RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2512
         (115 letters)



>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density
          lipoprotein receptor {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 44

 Score = 36.7 bits (85), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPN 76
           +++F C  G   IP  +  D   DC D SDE   + C N
Sbjct: 6  SSTQFKCNSGR-CIPEHWTCDGDNDCGDYSDETHAN-CTN 43


>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density
          lipoprotein receptor {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 42

 Score = 35.6 bits (82), Expect = 6e-05
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPN 76
             EF C    L IP  +  D   DC DSSDE     C  
Sbjct: 5  HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS---CEG 41


>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density
          lipoprotein receptor {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 45

 Score = 35.5 bits (82), Expect = 7e-05
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEP 69
             EF C +    I   +  D   DC D+SDE 
Sbjct: 7  QPGEFACANSR-CIQERWKCDGDNDCLDNSDEA 38


>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 35.2 bits (81), Expect = 1e-04
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDEPGTSACPN 76
             E +C   S   IP S+  D   DC    DE     C N
Sbjct: 2  RIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN---CGN 39


>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density
          lipoprotein receptor {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 39

 Score = 34.7 bits (80), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACP 75
            +EF C DG   I   +V D   DC D SDE     CP
Sbjct: 4  SQAEFRCHDGK-CISRQFVCDSDRDCLDGSDEAS---CP 38


>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
          earthworm (Lumbricus terrestris) [TaxId: 6398]}
          Length = 42

 Score = 34.5 bits (79), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 1/34 (2%)

Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDEP 69
             E  C       I      D   DC+D SDE 
Sbjct: 4  DEHESECRGDVPECIHDLLFCDGEKDCRDGSDED 37


>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
          lipoprotein receptor {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 44

 Score = 34.8 bits (80), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 36 QPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEP 69
          +  ++F C  G   I    V +   DC+D SDEP
Sbjct: 7  EGPNKFKCHSGE-CITLDKVCNMARDCRDWSDEP 39


>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density
          lipoprotein receptor {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 39

 Score = 34.0 bits (78), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEP 69
            + F C   +  IP  +  D+  DC+D SDE 
Sbjct: 4  GPASFQCNSST-CIPQLWACDNDPDCEDGSDEW 35


>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density
          lipoprotein receptor {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 37

 Score = 33.9 bits (78), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTS 72
           A EF C  G   I  S+  D   DC+D SDE   +
Sbjct: 3  SAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDEENCA 37


>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
          subunit {Common earthworm (Lumbricus terrestris)
          [TaxId: 6398]}
          Length = 41

 Score = 34.1 bits (78), Expect = 2e-04
 Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)

Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDE 68
              F C       I    V D + DC ++ DE
Sbjct: 3  EKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE 35


>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density
          lipoprotein receptor {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 39

 Score = 33.5 bits (77), Expect = 4e-04
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPN 76
             EF C DG+  I  S   D   DC+D SDE G   C N
Sbjct: 4  RPDEFQCSDGN-CIHGSRQCDREYDCKDMSDEVG---CVN 39


>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
          lipoprotein receptor {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 41

 Score = 33.2 bits (76), Expect = 5e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDE 68
           + +F+C       IP  +  D   DC + SDE
Sbjct: 6  KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38


>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
          lipoprotein receptor {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 44

 Score = 33.2 bits (76), Expect = 6e-04
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
            +EF C DG   I + +V D   +CQD SDE
Sbjct: 9  ERNEFQCQDGK-CISYKWVCDGSAECQDGSDE 39


>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail
          (Coturnix coturnix) [TaxId: 9091]}
          Length = 42

 Score = 31.0 bits (70), Expect = 0.003
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 37 PASEFTCFDGSLT----IPFSYVNDDYCDCQDSSDE 68
          P  +F C +         P  ++ D + DC D  DE
Sbjct: 3  PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38


>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
          subunit {Common earthworm (Lumbricus terrestris)
          [TaxId: 6398]}
          Length = 41

 Score = 30.9 bits (70), Expect = 0.004
 Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDE 68
             E  C       I   +V D + DC++  DE
Sbjct: 4  DEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36


>d1quba5 g.18.1.1 (A:244-326) beta2-glycoprotein I {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 76

 Score = 23.6 bits (51), Expect = 3.2
 Identities = 4/13 (30%), Positives = 8/13 (61%)

Query: 42 TCFDGSLTIPFSY 54
           C DG++ +P  +
Sbjct: 52 QCIDGTIEVPKCF 64


>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus
           thermophilus [TaxId: 274]}
          Length = 344

 Score = 23.5 bits (50), Expect = 9.3
 Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 3/33 (9%)

Query: 66  SDEPGTSACPNGTFHSHLLTRRFLIQISAKTWN 98
           +  PG+ A P    H    T   L ++      
Sbjct: 173 ARRPGSVAAPTAGLH---FTPELLERLREMGVE 202


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.421 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 427,391
Number of extensions: 16999
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 22
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)