BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2514
(71 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/33 (84%), Positives = 32/33 (96%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V+VGNGAVGKSSMIQRYC+G FT+DYKKTIGV
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV 40
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSS 50
VV++G VGK++++ R+ R F+ D + TIGV+ S
Sbjct: 13 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFS 48
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSS 50
VV++G VGK++++ R+ R F+ D + TIGV+ S
Sbjct: 28 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFS 63
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+V++G+ VGKS+++ R+ + F D K TIGV+
Sbjct: 16 IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVE 49
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ VGKS+++ R+ R F + K TIGV+
Sbjct: 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 41
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
Length = 167
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ VGKS+++ R+ R F + K TIGV+
Sbjct: 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 41
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ VGKS+++ R+ R F + K TIGV+
Sbjct: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 47
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ VGKS+++ R+ R F + K TIGV+
Sbjct: 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 65
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
Length = 172
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ VGKS+++ R+ R F + K TIGV+
Sbjct: 11 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 44
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ VGKS+++ R+ R F + K TIGV+
Sbjct: 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 65
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ VGKS+++ R+ R F + K TIGV+
Sbjct: 23 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 56
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 6 VLRGSIKG-------TVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSM 51
V RGS K +V+ G+ AVGKSS + R C+ F + T+GV M
Sbjct: 15 VPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM 67
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRY 55
+V+VG+G GK++ ++R+ G F + Y TIGV+ + Y
Sbjct: 15 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFY 55
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+V++G+ VGKS+++ R+ R F + K TIGV+
Sbjct: 10 IVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVE 43
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++++GN VGKS ++ R+ T+T DY TIGV
Sbjct: 24 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVD 57
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++GN VGKS ++ R+ T+T DY TIGV
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV 43
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++GN VGKS ++ R+ T+T DY TIGV
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV 43
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V+I+G+ VGK+S++ RY +++ YK TIG
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA 43
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIGA 70
K+S++ RY +++ YK TIGA
Sbjct: 21 KTSLMHRYVNDKYSQQYKATIGA 43
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRY 55
+V+VG+G GK++ ++R+ G F + Y TIGV+ + Y
Sbjct: 8 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFY 48
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRY 55
+V+VG+G GK++ ++R+ G F + Y TIGV+ + Y
Sbjct: 7 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFY 47
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
Length = 216
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 51
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVE 46
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6
Complexed With Gdp
Length = 162
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V +G AVGK+S+I R+ TF +Y+ TIG+
Sbjct: 4 LVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGI 36
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++I+GN +VGK+S + RY TFT + T+G+
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGI 58
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
VV++G G VGK+S++ RYC F + T+G
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGA 41
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G+GA GK+S+ + + TF + YK+TIG+
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGL 41
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 6 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVE 46
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIG 46
V+I+G+ VGK+S++ +Y F+ YK TIG
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIG 42
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIGA 70
K+S++ +Y F+ YK TIGA
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGA 43
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V+I+G+ VGK+S++ +Y F+ YK TIG
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA 43
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIGA 70
K+S++ +Y F+ YK TIGA
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGA 43
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V+I+G+ VGK+S++ +Y F+ YK TIG
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA 43
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIGA 70
K+S++ +Y F+ YK TIGA
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGA 43
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++I+GN +VGK+S + RY +FT + T+G+
Sbjct: 11 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGID 44
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V+I+G+ VGK+S++ +Y F+ YK TIG
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA 43
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIGA 70
K+S++ +Y F+ YK TIGA
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGA 43
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++I+GN +VGK+S + RY +FT + T+G+
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGID 41
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 1 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 39
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 8 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 48
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
Length = 176
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 2 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 42
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
+V++G AVGKSS++ R+ +G F + TIG + + Q C
Sbjct: 11 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA-AFLTQSVC 51
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With
Its Cargo (Kap60p) And Rangtp
Length = 176
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G F + Y T+GV+
Sbjct: 6 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
Length = 168
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G AVGKSS++ R+ +G F + TIG
Sbjct: 8 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 40
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIG 46
R + + ++G+G VGK++ I R G F ++Y T+G
Sbjct: 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVG 45
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
+V++G AVGKSS++ R+ +G F + TIG + + Q C
Sbjct: 8 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA-AFLTQTVC 48
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G AVGKSS++ R+ +G F + TIG
Sbjct: 10 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 42
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
Length = 177
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
V+++G+G VGKSS++ RY F TIGV+
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE 43
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G AVGKSS++ R+ +G F + TIG
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 41
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
V+++G+G VGKSS++ RY F TIGV+
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVE 43
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
Length = 177
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
V+++G+G VGKSS++ RY F TIGV+
Sbjct: 12 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE 45
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
+V++G AVGKSS++ R+ +G F + TIG + + Q C
Sbjct: 6 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA-AFLTQTVC 46
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSM 51
+V+VG+ +VGK+ ++QR+ G F+ TIGV +M
Sbjct: 32 LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTM 68
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
+V++G AVGKSS++ R+ +G F + TIG + + Q C
Sbjct: 10 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA-AFLTQTVC 50
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++I+G+ VGKSS++ R+ TF+ Y TIGV
Sbjct: 12 LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGV 44
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V VG+GAVGK+ M+ Y TF DY T+
Sbjct: 10 VTVGDGAVGKTCMLISYTSNTFPTDYVPTV 39
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++++G+G VGKSS++ RY F TIGV+
Sbjct: 14 IILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVE 47
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
G++ V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 51
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 6 VLRGS-----IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V RGS K V+I+G+ VGK+S+++R+ TF K T+GV
Sbjct: 15 VPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV 61
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+V++G+ VGKS+++ R+ F + K TIGV+
Sbjct: 13 IVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVE 46
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V + G G VGKSS++ R+ +GTF Y T+
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTV 36
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++I+G VGKSS++ R+ TF + TIGV
Sbjct: 18 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGV 50
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp
Analogue
Length = 201
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 6 VLRGSIKG-----TVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V RGS++ +V++GN VGK+ +++R+ +G F TIGV
Sbjct: 15 VPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV 61
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIG 46
+V++G AVGKSS++ R+ F + + TIG
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++++GN +VGK+S + RY +FT + T+G+
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID 58
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
VV++G G VGK+S++ RYC F + T+
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTL 39
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
VV++G G VGK+S++ RYC F + T+
Sbjct: 23 VVLLGEGCVGKTSLVLRYCENKFNDKHITTL 53
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
+V++G AVGKSS++ R+ +G F +Y+++ + + Q C
Sbjct: 8 LVLLGESAVGKSSLVLRFVKGQF-HEYQESTIQAAFLTQTVC 48
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
Length = 181
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV 44
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 9 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV 41
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
Length = 180
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V VG+GAVGK+ M+ Y TF DY T+
Sbjct: 10 VTVGDGAVGKTCMLISYTGNTFPTDYVPTV 39
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 9 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV 41
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
Length = 175
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV 44
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
K +V +G +VGK+S+I R+ +F Y+ TIG+
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI 37
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV 43
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD 34
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 28 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV 60
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 2 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV 34
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 19 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV 51
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V VG+GAVGK+ ++ Y TF DY T+
Sbjct: 12 VTVGDGAVGKTCLLISYTSNTFPTDYVPTV 41
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTF 60
+V+VG+GAVGK+ ++ + +G Y T+ S + +Y F
Sbjct: 26 IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEF 71
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
K +V +G +VGK+S+I R+ +F Y+ TIG+
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI 36
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
K +V +G +VGK+S+I R+ +F Y+ TIG+
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI 41
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gtp
Length = 170
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G VGKSS++ R+ +G F + TIG
Sbjct: 9 LVLLGESPVGKSSLVLRFVKGQFHEFQESTIGA 41
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTF 60
+V+VG+GAVGK+ ++ + +G Y T+ S + +Y F
Sbjct: 25 IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEF 70
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
K +V +G +VGK+S+I R+ +F Y+ TIG+
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI 41
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 36 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV 68
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 32.3 bits (72), Expect = 0.061, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
++ +V+VG+G GK++ ++R+ G + Y T+GV+
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVE 51
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
Length = 179
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
K +V +G +VGK+S+I R+ +F Y+ TIG+
Sbjct: 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI 49
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex
With Gppnhp
Length = 170
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G VGKSS++ R+ +G F + TIG
Sbjct: 9 LVLLGESEVGKSSLVLRFVKGQFHEFQESTIGA 41
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
K +V +G +VGK+S+I R+ +F Y+ TIG+
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI 48
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
K +V +G +VGK+S+I R+ +F Y+ TIG+
Sbjct: 16 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI 51
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex
With Gppnhp
Length = 170
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G VGKSS++ R+ +G F + TIG
Sbjct: 9 LVLLGESKVGKSSLVLRFVKGQFHEFQESTIGA 41
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With
Rab33 Gtpase Bound To Gdp And Alf3
Length = 198
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGK+ + R+C G F + TIGV
Sbjct: 32 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV 64
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex
With Gppnhp
Length = 170
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G VGKSS++ R+ +G F + TIG
Sbjct: 9 LVLLGESLVGKSSLVLRFVKGQFHEFQESTIGA 41
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTDSYISTIGV 44
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGK+ + R+C G F + TIGV
Sbjct: 23 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV 55
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 1 MLNLWVLRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
M NL+ +IK V+VG+GAVGK+ ++ Y F+ +Y T+
Sbjct: 4 MENLYFQGQAIK--CVVVGDGAVGKTCLLISYTTNAFSGEYIPTV 46
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGK+ ++ R+ T+T Y TIGV
Sbjct: 19 LLLIGDSGVGKNCLLLRFADDTYTESYISTIGV 51
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+V++G+G VGKS++ ++ +G F +Y TI
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVDEYDPTI 36
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex
With Gppnhp
Length = 170
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G VGKSS++ R+ +G F + TIG
Sbjct: 9 LVLLGESRVGKSSLVLRFVKGQFHEFQESTIGA 41
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 1 MLNLWVLRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
M NL+ +IK V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 21 MENLYFQGQAIK--CVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 63
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding
Protein Rhod
Length = 214
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
VV+VG+G GK+S++ + G F Y T+
Sbjct: 37 VVLVGDGGCGKTSLLMVFADGAFPESYTPTV 67
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 1 MLNLWVLRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
M NL+ +IK V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 21 MENLYFQGQAIK--CVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 63
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKT 44
V++VG+G VGKS++ ++ F DY+ T
Sbjct: 10 VIMVGSGGVGKSALTLQFMYDEFVEDYEPT 39
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKT 44
V++VG+G VGKS++ ++ F DY+ T
Sbjct: 6 VIMVGSGGVGKSALTLQFMYDEFVEDYEPT 35
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKT 44
V++VG+G VGKS++ ++ F DY+ T
Sbjct: 9 VIMVGSGGVGKSALTLQFMYDEFVEDYEPT 38
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals
A Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKT 44
V++VG+G VGKS++ ++ F DY+ T
Sbjct: 21 VIMVGSGGVGKSALTLQFMYDEFVEDYEPT 50
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
Length = 168
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKT 44
V++VG+G VGKS++ ++ F DY+ T
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPT 36
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKT 44
V++VG+G VGKS++ ++ F DY+ T
Sbjct: 9 VIMVGSGGVGKSALTLQFMYDEFVEDYEPT 38
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+V++G+G VGKS++ ++ +G F Y TI
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTI 36
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
SI +V++G+ GKSS++ R+ + F + TIG
Sbjct: 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA 47
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+V++G+G VGKS++ ++ +G F Y TI
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTI 36
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKT 44
V++VG+G VGKS++ ++ F DY+ T
Sbjct: 17 VIMVGSGGVGKSALTLQFMYDEFVEDYEPT 46
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+++GN GKS ++ ++ F D TIGV+
Sbjct: 14 LVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVE 46
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 6 VLRGSIKGTVV----IVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
V RGSI + ++G+ GKS ++ ++ F +D TIGV+
Sbjct: 15 VPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVE 61
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+++GN GKS ++ ++ F D TIGV+
Sbjct: 15 LVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVE 47
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+++GN GKS ++ ++ F D TIGV+
Sbjct: 12 LVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVE 44
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
Length = 177
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal
Domain Sopb In Complex With Cdc42
Length = 193
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 17 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 46
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 11 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 40
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 8 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 37
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
Length = 180
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 9 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 38
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 11 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 40
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 10 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 39
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 9 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 38
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 14 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 43
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTIG 46
V++G +VGKSS++ R + TF + TIG
Sbjct: 11 VLLGESSVGKSSIVLRLTKDTFHENTNTTIG 41
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 10 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV 39
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In
Complex With Cdc42 (T17n Mutant)
Length = 195
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 14 VVVGDGAVGKNCLLISYTTNKFPSEYVPTV 43
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V VG+GAVGK+ M+ Y F DY T+
Sbjct: 13 VTVGDGAVGKTCMLICYTSNKFPTDYIPTV 42
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 10 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 39
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 26 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 55
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
VVI+G VGK+S+ ++ G F+ Y T+
Sbjct: 27 VVILGYRCVGKTSLAHQFVEGEFSEGYDPTV 57
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+I+G+ VGKS ++ ++ F D TIGV+
Sbjct: 19 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE 51
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+I+G+ VGKS ++ ++ F D TIGV+
Sbjct: 34 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE 66
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 11 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 40
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIG 46
V ++G+ VGKSS++ R+ +F + TIG
Sbjct: 8 VCLLGDTGVGKSSIVWRFVEDSFDPNINPTIG 39
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of
The Vav1 Exchange Factor
Length = 184
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C
Beta 2
Length = 178
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 188
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 188
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 188
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
++K +V+VG+ GK++++ + + F +Y T+
Sbjct: 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 61
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 9 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 38
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 8 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 37
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 8 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 37
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex
With Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
++K +V+VG+ GK++++ + + F +Y T+
Sbjct: 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 40
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
Length = 200
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
++K +V+VG+ GK++++ + + F +Y T+
Sbjct: 21 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 56
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 9 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 38
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
Length = 184
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 14 VVVGDGAVGKNCLLISYTTNAFPGEYIPTV 43
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 3 NLWVLRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRD 40
NL+ +K V IVGN + GKS+++ RY GT+ ++
Sbjct: 13 NLYFQGPELK--VGIVGNLSSGKSALVHRYLTGTYVQE 48
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From
Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From
Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From
Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From
Chlamydomonas
Length = 208
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 7 LRGSIKGTVVIVGNGAVGKSSMIQRY-CRGT-FTRDYKKTIGVK 48
+ +++ V +VG VGKS++I + +G+ F +DY T GV+
Sbjct: 15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVE 58
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 1 MLNLWVLRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
M NL+ +IK V+VG+GAVGK+ ++ Y +Y T+
Sbjct: 21 MENLYFQGQAIK--CVVVGDGAVGKTCLLISYTTNALPGEYIPTV 63
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIG 46
V ++G+ VGKSS++ R+ +F + TIG
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG 40
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 6 VLRGSI--KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V RGS + V ++G+ VGKSS++ R+ + F + TIG
Sbjct: 15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA 58
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 6 VLRGS----IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V RGS I+ +VIVG+GA GK+ ++ + + F Y T+
Sbjct: 15 VPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 58
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
SI+ +VIVG+GA GK+ ++ +G F Y T+
Sbjct: 8 SIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV 43
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 6 VLRGS----IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V RGS I+ +VIVG+GA GK+ ++ + + F Y T+
Sbjct: 15 VPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 58
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+I+ +VIVG+GA GK+ ++ + + F Y T+
Sbjct: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 38
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+I+ +VIVG+GA GK+ ++ + + F Y T+
Sbjct: 3 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 39
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ F + TIG+
Sbjct: 10 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI 42
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y F +Y +
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPAV 36
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+I+ +VIVG+GA GK+ ++ + + F Y T+
Sbjct: 4 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 40
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp
(Complex C)
Length = 185
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+I+ +VIVG+GA GK+ ++ + + F Y T+
Sbjct: 6 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 42
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+I+ +VIVG+GA GK+ ++ + + F Y T+
Sbjct: 5 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 41
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+I+ +VIVG+GA GK+ ++ + + F Y T+
Sbjct: 4 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 40
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKT 44
V+VG+GAVGK+S++ Y + +Y T
Sbjct: 24 VLVGDGAVGKTSLVVSYTTNGYPTEYIPT 52
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ F + TIG+
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI 38
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ F + TIG+
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI 38
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ F + TIG+
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI 38
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+I+ +VIVG+GA GK+ ++ + + F Y T+
Sbjct: 4 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 40
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ F + TIG+
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI 55
>pdb|3AI7|A Chain A, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|B Chain B, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|C Chain C, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|D Chain D, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|E Chain E, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|F Chain F, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|G Chain G, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|H Chain H, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
Length = 831
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR 57
+ TV+I+G G G + Q Y GT+T + K I + +Q++ R
Sbjct: 87 QNTVIIMGPGHGGPAGTSQSYLDGTYTETFPK-ITKDEAGLQKFFR 131
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 3 NLWVLRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
NL+ + I+ +V+VG+GA GK+ ++ + + F Y T+
Sbjct: 17 NLY-FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV 58
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+GAVGK+ ++ Y +Y T+
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKLPSEYVPTV 36
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+ I+G +VGKSS+ ++ G F Y TI
Sbjct: 9 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTI 39
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To
Gdp
Length = 169
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+ I+G +VGKSS+ ++ G F Y TI
Sbjct: 4 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTI 34
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 6 VLRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
V RGS +I+G+ VGKS ++ ++ F + TIGV+
Sbjct: 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 57
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+ I+G +VGKSS+ ++ G F Y TI
Sbjct: 9 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTI 39
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
GS + +V+VG VGKS++ + + F +Y TI
Sbjct: 1 GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 37
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+V++G+ VGKS++ ++ +G F Y TI
Sbjct: 8 LVVLGSVGVGKSALTVQFVQGIFVEKYDPTI 38
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+ AVGK+ ++ Y F +Y T+
Sbjct: 7 VVVGDVAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|3AHJ|A Chain A, H553a Mutant Of Phosphoketolase From Bifidobacterium Breve
Length = 845
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR 57
+ TV I+G G G + Q Y GT+T +Y I + +Q++ R
Sbjct: 107 QNTVFIMGPGHGGPAGTSQSYVDGTYT-EYYPNITKDEAGLQKFFR 151
>pdb|3AHI|A Chain A, H320a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR 57
+ TV I+G G G + Q Y GT+T +Y I + +Q++ R
Sbjct: 107 QNTVFIMGPGHGGPAGTSQSYVDGTYT-EYYPNITKDEAGLQKFFR 151
>pdb|3AHH|A Chain A, H142a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR 57
+ TV I+G G G + Q Y GT+T +Y I + +Q++ R
Sbjct: 107 QNTVFIMGPGHGGPAGTSQSYVDGTYT-EYYPNITKDEAGLQKFFR 151
>pdb|3AHG|A Chain A, H64a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With A Tricyclic Ring Form Of Thiamine
Diphosphate
Length = 845
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR 57
+ TV I+G G G + Q Y GT+T +Y I + +Q++ R
Sbjct: 107 QNTVFIMGPGHGGPAGTSQSYVDGTYT-EYYPNITKDEAGLQKFFR 151
>pdb|3AHC|A Chain A, Resting Form Of Phosphoketolase From Bifidobacterium Breve
pdb|3AHD|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
2-Acetyl- Thiamine Diphosphate
pdb|3AHE|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Dihydroxyethyl Thiamine Diphosphate
pdb|3AHF|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Inorganic Phosphate
Length = 845
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR 57
+ TV I+G G G + Q Y GT+T +Y I + +Q++ R
Sbjct: 107 QNTVFIMGPGHGGPAGTSQSYVDGTYT-EYYPNITKDEAGLQKFFR 151
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+ +G+ VGK+S++ +Y G F + T+G+
Sbjct: 15 LALGDSGVGKTSVLYQYTDGKFNSKFITTVGID 47
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+ AVGK+ ++ Y F +Y T+
Sbjct: 14 VVVGDVAVGKTCLLISYTTNAFPGEYIPTV 43
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 16 VIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
V+VG+ AVGK+ ++ Y F +Y T+
Sbjct: 13 VVVGDVAVGKTCLLISYTTNAFPGEYIPTV 42
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGK+ ++ R+ F + TIG+
Sbjct: 11 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGI 43
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGK+ ++ R+ F + TIG+
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGI 41
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++ +G+ VGK++ + RY F + T+G+
Sbjct: 14 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI 46
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++ +G+ VGK++ + RY F + T+G+
Sbjct: 28 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI 60
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++ +G+ VGK++ + RY F + T+G+
Sbjct: 14 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI 46
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++ +G+ VGK++ + RY F + T+G+
Sbjct: 14 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI 46
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++ +G+ VGK++ + RY F + T+G+
Sbjct: 14 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,920,031
Number of Sequences: 62578
Number of extensions: 57208
Number of successful extensions: 596
Number of sequences better than 100.0: 257
Number of HSP's better than 100.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 330
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)