BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2514
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35288|RAB23_MOUSE Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2
Length = 237
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/33 (84%), Positives = 32/33 (96%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V+VGNGAVGKSSMIQRYC+G FT+DYKKTIGV
Sbjct: 12 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV 44
>sp|Q9ULC3|RAB23_HUMAN Ras-related protein Rab-23 OS=Homo sapiens GN=RAB23 PE=1 SV=1
Length = 237
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/33 (84%), Positives = 32/33 (96%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V+VGNGAVGKSSMIQRYC+G FT+DYKKTIGV
Sbjct: 12 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV 44
>sp|Q55E31|RB32B_DICDI Ras-related protein Rab-32B OS=Dictyostelium discoideum GN=rab32B
PE=3 SV=1
Length = 260
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSM 51
V+++G+ AVGKSS+I+RYC G F+ +YK TIGV S+
Sbjct: 62 VLLIGDYAVGKSSIIKRYCTGIFSPNYKLTIGVDFSV 98
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIG 69
KSS+I+RYC G F+ +YK TIG
Sbjct: 72 KSSIIKRYCTGIFSPNYKLTIG 93
>sp|O95755|RAB36_HUMAN Ras-related protein Rab-36 OS=Homo sapiens GN=RAB36 PE=2 SV=2
Length = 333
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
VV+VG+ VGK+S+I R+C+ F RDYK TIGV
Sbjct: 126 VVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGV 158
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 26 SSMIQRYCRGTFTRDYKKTIGV------KSSMIQRYCRGTFTRDYKKTIG 69
S+ QR GT K + V K+S+I R+C+ F RDYK TIG
Sbjct: 108 SAACQRRNTGTVGLKLSKVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIG 157
>sp|Q5U1Y1|RAB34_RAT Ras-related protein Rab-34 OS=Rattus norvegicus GN=Rab34 PE=2
SV=1
Length = 259
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSM 51
V++VG+ +VGK+ +I R+C+ TF ++YK TIGV M
Sbjct: 55 VIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEM 91
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIG 69
K+ +I R+C+ TF ++YK TIG
Sbjct: 65 KTCLINRFCKDTFDKNYKATIG 86
>sp|Q06AU4|RAB34_PIG Ras-related protein Rab-34 OS=Sus scrofa GN=RAB34 PE=2 SV=1
Length = 259
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSM 51
V++VG+ +VGK+ +I R+C+ TF ++YK TIGV M
Sbjct: 55 VIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEM 91
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIG 69
K+ +I R+C+ TF ++YK TIG
Sbjct: 65 KTCLINRFCKDTFDKNYKATIG 86
>sp|Q64008|RAB34_MOUSE Ras-related protein Rab-34 OS=Mus musculus GN=Rab34 PE=1 SV=2
Length = 259
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSM 51
V++VG+ +VGK+ +I R+C+ TF ++YK TIGV M
Sbjct: 55 VIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEM 91
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIG 69
K+ +I R+C+ TF ++YK TIG
Sbjct: 65 KTCLINRFCKDTFDKNYKATIG 86
>sp|Q9BZG1|RAB34_HUMAN Ras-related protein Rab-34 OS=Homo sapiens GN=RAB34 PE=1 SV=1
Length = 259
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSM 51
V++VG+ +VGK+ +I R+C+ TF ++YK TIGV M
Sbjct: 55 VIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEM 91
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIG 69
K+ +I R+C+ TF ++YK TIG
Sbjct: 65 KTCLINRFCKDTFDKNYKATIG 86
>sp|Q91YQ1|RAB7L_MOUSE Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1
Length = 204
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 28/33 (84%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V++VG+ AVGK+S++QRY + +F++ YK T+GV
Sbjct: 10 VLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGV 42
>sp|Q63481|RAB7L_RAT Ras-related protein Rab-7L1 OS=Rattus norvegicus GN=Rab7l1 PE=2
SV=1
Length = 204
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 28/33 (84%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V++VG+ AVGK+S++QRY + +F++ YK T+GV
Sbjct: 10 VLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGV 42
>sp|Q5R7A4|RAB7L_PONAB Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1
Length = 203
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 30/37 (81%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSM 51
V++VG+ AVGK+S++QRY + +F++ YK T+GV ++
Sbjct: 10 VLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFAL 46
>sp|O14966|RAB7L_HUMAN Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1
Length = 203
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 30/37 (81%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSM 51
V++VG+ AVGK+S++QRY + +F++ YK T+GV ++
Sbjct: 10 VLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFAL 46
>sp|Q8CAM5|RAB36_MOUSE Ras-related protein Rab-36 OS=Mus musculus GN=Rab36 PE=2 SV=1
Length = 267
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRY 55
VV+VG+ VGK+S+I R C+ F DYK TIGV I+R+
Sbjct: 60 VVVVGDLYVGKTSLIHRLCKNVFDHDYKATIGVDFE-IERF 99
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIG 69
K+S+I R C+ F DYK TIG
Sbjct: 70 KTSLIHRLCKNVFDHDYKATIG 91
>sp|Q8MXQ2|RB32C_DICDI Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C
PE=3 SV=2
Length = 224
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+I +++VG A GK+S+IQRYC F YK TIGV
Sbjct: 26 AISLKILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGV 63
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIG 69
K+S+IQRYC F YK TIG
Sbjct: 41 KTSIIQRYCHNNFQPKYKPTIG 62
>sp|P19892|RAA5E_ARATH Ras-related protein RABA5e OS=Arabidopsis thaliana GN=RABA5E PE=2
SV=1
Length = 218
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+V++G+ AVGKS+++ RY R F+ + K TIGV+
Sbjct: 15 IVVIGDSAVGKSNLLSRYARNEFSANSKATIGVE 48
>sp|P28187|RAA5C_ARATH Ras-related protein RABA5c OS=Arabidopsis thaliana GN=RABA5C PE=1
SV=1
Length = 214
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VI+G+ AVGKS+++ RY R F + K TIGV+
Sbjct: 15 IVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVE 48
>sp|Q9FJN8|RAA4A_ARATH Ras-related protein RABA4a OS=Arabidopsis thaliana GN=RABA4A PE=2
SV=1
Length = 226
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ AVGKS ++ RY R F+ D K TIGV+
Sbjct: 20 VVLIGDSAVGKSQILARYARDEFSLDSKATIGVE 53
>sp|Q550H6|RB11C_DICDI Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C
PE=1 SV=1
Length = 224
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+VI+G+ AVGKS+++ R+ R FT K TIGV
Sbjct: 13 IVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGV 45
>sp|Q9SIP0|RAA5D_ARATH Ras-related protein RABA5d OS=Arabidopsis thaliana GN=RABA5D PE=2
SV=1
Length = 219
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VI+G+ AVGKS+++ RY R F K TIGV+
Sbjct: 15 IVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVE 48
>sp|Q40522|RB11D_TOBAC Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2
SV=1
Length = 222
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ AVGKS ++ R+ R F+ D K TIGV+
Sbjct: 18 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVE 51
>sp|Q7ZYF1|DJ27A_XENLA DnaJ homolog subfamily C member 27-A OS=Xenopus laevis
GN=dnajc27-a PE=2 SV=1
Length = 273
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
R +++ V+ +GN VGKS +I+RYC F Y+ TIG+
Sbjct: 12 RKALRIKVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGI 51
>sp|P38543|RAN_GIAIN GTP-binding nuclear protein Ran OS=Giardia intestinalis PE=3 SV=1
Length = 226
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG 58
I V++VG+GA GK++ + R+ G F + Y TIGV+ + Y G
Sbjct: 5 ISFKVILVGDGATGKTTFVTRHITGEFRKQYISTIGVEIRQLPFYVAG 52
>sp|Q9SMQ6|RAA4B_ARATH Ras-related protein RABA4b OS=Arabidopsis thaliana GN=RABA4B PE=2
SV=1
Length = 224
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ AVGKS ++ R+ R F+ D K TIGV+
Sbjct: 20 VVLIGDSAVGKSQLLARFARDEFSMDSKATIGVE 53
>sp|Q6IMM1|DJC27_CHICK DnaJ homolog subfamily C member 27 OS=Gallus gallus GN=DNAJC27
PE=2 SV=1
Length = 273
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
R S++ V+ +GN VGKS +I+RYC F Y TIG+
Sbjct: 12 RKSLRIKVISMGNAEVGKSCIIKRYCEKRFVPKYLATIGI 51
>sp|Q9NZQ0|DJC27_HUMAN DnaJ homolog subfamily C member 27 OS=Homo sapiens GN=DNAJC27
PE=1 SV=1
Length = 273
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR 57
S++ V+ +GN VGKS +I+RYC F Y TIG+ + + + R
Sbjct: 14 SLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVR 61
>sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1
Length = 226
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ AVGKS ++ R+ R F+ D K TIGV+
Sbjct: 20 VVLIGDSAVGKSQILARFARNEFSLDSKSTIGVE 53
>sp|Q5RDE5|DJC27_PONAB DnaJ homolog subfamily C member 27 OS=Pongo abelii GN=DNAJC27
PE=2 SV=1
Length = 273
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR 57
S++ V+ +GN VGKS +I+RYC F Y TIG+ + + + R
Sbjct: 14 SLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVR 61
>sp|Q5M7D1|DJ27B_XENLA DnaJ homolog subfamily C member 27-B OS=Xenopus laevis
GN=dnajc27-b PE=2 SV=1
Length = 276
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
R ++ V+ +GN VGKS +I+RYC F Y+ TIG+
Sbjct: 12 RKPLRIKVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGI 51
>sp|Q9LH50|RAA4D_ARATH Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1
SV=1
Length = 222
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ AVGK+ ++ R+ R F+ D K TIGV+
Sbjct: 18 VVLIGDSAVGKTQLLARFARNEFSVDSKATIGVE 51
>sp|Q7F7I7|RAN1_ORYSJ GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica
GN=RAN1 PE=2 SV=1
Length = 221
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VIVG+G GK++ ++R+ G F + Y+ TIGV+
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49
>sp|A2WSI7|RAN1_ORYSI GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica
GN=RAN1 PE=2 SV=2
Length = 221
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VIVG+G GK++ ++R+ G F + Y+ TIGV+
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49
>sp|P38548|RAN_VICFA GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1
Length = 221
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VIVG+G GK++ ++R+ G F + Y+ TIGV+
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49
>sp|P41919|RANB1_TOBAC GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1
PE=2 SV=1
Length = 221
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VIVG+G GK++ ++R+ G F + Y+ TIGV+
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49
>sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1
PE=2 SV=1
Length = 221
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VIVG+G GK++ ++R+ G F + Y+ TIGV+
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49
>sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3
PE=1 SV=2
Length = 221
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VIVG+G GK++ ++R+ G F + Y+ TIGV+
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49
>sp|P38547|RAN2_SOLLC GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2
PE=2 SV=1
Length = 221
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VIVG+G GK++ ++R+ G F + Y+ TIGV+
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49
>sp|Q7GD79|RAN2_ORYSJ GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica
GN=RAN2 PE=2 SV=1
Length = 221
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VIVG+G GK++ ++R+ G F + Y+ TIGV+
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49
>sp|A2Y7R5|RAN2_ORYSI GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica
GN=RAN2 PE=2 SV=1
Length = 221
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VIVG+G GK++ ++R+ G F + Y+ TIGV+
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49
>sp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2
PE=1 SV=3
Length = 221
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VIVG+G GK++ ++R+ G F + Y+ TIGV+
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49
>sp|P38546|RAN1_SOLLC GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1
PE=2 SV=1
Length = 221
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VIVG+G GK++ ++R+ G F + Y+ TIGV+
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49
>sp|P41916|RAN1_ARATH GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1
PE=1 SV=1
Length = 221
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
+VIVG+G GK++ ++R+ G F + Y+ TIGV+
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49
>sp|Q8CFP6|DJC27_MOUSE DnaJ homolog subfamily C member 27 OS=Mus musculus GN=Dnajc27
PE=2 SV=1
Length = 273
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
S++ V+ +GN VGKS +I+RYC F Y TIG+
Sbjct: 14 SLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGI 51
>sp|Q40520|RB11C_TOBAC Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2
SV=1
Length = 222
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ AVGK+ ++ R+ R F+ D K TIGV+
Sbjct: 18 VVLIGDSAVGKTQILARFARNEFSLDSKATIGVE 51
>sp|Q6IML7|DJC27_RAT DnaJ homolog subfamily C member 27 OS=Rattus norvegicus
GN=Dnajc27 PE=2 SV=1
Length = 273
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
S++ V+ +GN VGKS +I+RYC F Y TIG+
Sbjct: 14 SLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGI 51
>sp|P25766|RLGP1_ORYSJ Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1
PE=2 SV=2
Length = 226
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ AVGKS ++ R+ R F D K TIGV+
Sbjct: 21 VVLIGDSAVGKSQLLARFARNEFNLDSKATIGVE 54
>sp|A5D7F5|DJC27_BOVIN DnaJ homolog subfamily C member 27 OS=Bos taurus GN=DNAJC27 PE=2
SV=1
Length = 273
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
S++ V+ +GN VGKS +I+RYC F Y TIG+
Sbjct: 14 SLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGI 51
>sp|Q9FE79|RAA4C_ARATH Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2
SV=1
Length = 223
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
VV++G+ AVGKS ++ R+ R F+ + K TIGV+
Sbjct: 18 VVLIGDSAVGKSQLLARFSRNEFSIESKATIGVE 51
>sp|Q00246|RHO4_YEAST GTP-binding protein RHO4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RHO4 PE=1 SV=2
Length = 291
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+V+VG+GAVGK+ ++ Y +GTF DY TI
Sbjct: 75 IVVVGDGAVGKTCLLISYVQGTFPTDYIPTI 105
>sp|Q6IMK3|DJC27_DANRE DnaJ homolog subfamily C member 27 OS=Danio rerio GN=dnajc27 PE=2
SV=1
Length = 273
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+ S++ V+ +GN VGKS +I+RYC F Y TIG+
Sbjct: 12 KKSLRVKVISLGNAEVGKSCIIKRYCEKRFVPKYLATIGI 51
>sp|Q9P8V0|RHO4_ASHGO GTP-binding protein RHO4 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RHO4 PE=3 SV=1
Length = 259
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+V+VG+GA GK+S++ Y +G F DY TI
Sbjct: 55 IVVVGDGATGKTSLLMSYTQGQFPEDYVPTI 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,491,065
Number of Sequences: 539616
Number of extensions: 689151
Number of successful extensions: 5259
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4405
Number of HSP's gapped (non-prelim): 856
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)