Query psy2514
Match_columns 71
No_of_seqs 145 out of 1155
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 18:08:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 1E-21 3.5E-26 114.7 7.7 62 9-70 10-72 (216)
2 2iwr_A Centaurin gamma 1; ANK 99.7 1.5E-17 5.3E-22 92.8 7.8 62 7-70 2-64 (178)
3 2ew1_A RAS-related protein RAB 99.7 8.1E-17 2.8E-21 92.5 9.8 64 7-70 21-85 (201)
4 3c5c_A RAS-like protein 12; GD 99.7 4.7E-17 1.6E-21 92.1 8.5 64 7-70 16-79 (187)
5 2j0v_A RAC-like GTP-binding pr 99.7 1E-16 3.4E-21 91.9 8.9 64 7-70 4-67 (212)
6 2y8e_A RAB-protein 6, GH09086P 99.7 1.7E-16 5.8E-21 88.2 9.4 64 7-70 9-73 (179)
7 2oil_A CATX-8, RAS-related pro 99.7 2E-16 7E-21 89.4 9.5 67 4-70 17-84 (193)
8 2hup_A RAS-related protein RAB 99.7 1.5E-16 5.1E-21 91.0 8.8 64 7-70 24-88 (201)
9 3q3j_B RHO-related GTP-binding 99.7 1.2E-16 4.1E-21 92.3 8.2 63 8-70 23-85 (214)
10 1gwn_A RHO-related GTP-binding 99.7 1.2E-16 4E-21 92.0 8.1 63 7-70 23-86 (205)
11 1m7b_A RND3/RHOE small GTP-bin 99.7 1.9E-16 6.4E-21 89.2 8.4 62 9-70 4-65 (184)
12 2bcg_Y Protein YP2, GTP-bindin 99.7 3.9E-16 1.3E-20 89.1 9.8 62 9-70 5-67 (206)
13 1z08_A RAS-related protein RAB 99.7 3.3E-16 1.1E-20 86.5 9.1 62 9-70 3-65 (170)
14 2bme_A RAB4A, RAS-related prot 99.7 4.3E-16 1.5E-20 87.3 9.7 64 7-70 5-69 (186)
15 2fn4_A P23, RAS-related protei 99.7 3.3E-16 1.1E-20 87.1 9.0 62 8-70 5-67 (181)
16 3t5g_A GTP-binding protein RHE 99.7 2.9E-16 9.8E-21 87.8 8.8 62 8-70 2-64 (181)
17 2hxs_A RAB-26, RAS-related pro 99.7 9.3E-17 3.2E-21 89.4 6.6 62 9-70 3-66 (178)
18 3reg_A RHO-like small GTPase; 99.7 2.4E-16 8.2E-21 89.2 8.3 63 8-70 19-81 (194)
19 3ihw_A Centg3; RAS, centaurin, 99.7 3.1E-16 1.1E-20 88.7 8.7 62 7-70 15-77 (184)
20 1z2a_A RAS-related protein RAB 99.7 4.6E-16 1.6E-20 85.7 9.1 61 10-70 3-64 (168)
21 3kkq_A RAS-related protein M-R 99.7 3.8E-16 1.3E-20 87.5 8.8 63 7-70 13-76 (183)
22 3tw8_B RAS-related protein RAB 99.7 4E-16 1.4E-20 86.8 8.5 64 7-70 4-68 (181)
23 2o52_A RAS-related protein RAB 99.7 3.2E-16 1.1E-20 89.5 8.1 64 7-70 20-84 (200)
24 3clv_A RAB5 protein, putative; 99.7 4.7E-16 1.6E-20 87.6 8.7 52 7-58 2-53 (208)
25 2fu5_C RAS-related protein RAB 99.7 7.6E-17 2.6E-21 90.3 5.3 62 9-70 5-67 (183)
26 3tkl_A RAS-related protein RAB 99.7 7.7E-16 2.6E-20 86.9 9.5 64 7-70 11-75 (196)
27 1wms_A RAB-9, RAB9, RAS-relate 99.7 7E-16 2.4E-20 85.8 9.2 62 9-70 4-66 (177)
28 2atx_A Small GTP binding prote 99.7 4.3E-16 1.5E-20 88.1 8.4 62 8-70 14-76 (194)
29 1r2q_A RAS-related protein RAB 99.7 7E-16 2.4E-20 85.0 9.1 62 9-70 3-65 (170)
30 1vg8_A RAS-related protein RAB 99.7 4.9E-16 1.7E-20 88.4 8.6 63 8-70 4-67 (207)
31 2a5j_A RAS-related protein RAB 99.7 8.2E-16 2.8E-20 87.0 9.3 64 7-70 16-80 (191)
32 2atv_A RERG, RAS-like estrogen 99.7 5.3E-16 1.8E-20 88.0 8.5 62 9-70 25-86 (196)
33 1z0f_A RAB14, member RAS oncog 99.7 1.1E-15 3.8E-20 84.9 9.6 64 7-70 10-74 (179)
34 1mh1_A RAC1; GTP-binding, GTPa 99.7 7.7E-16 2.6E-20 86.0 8.8 61 10-70 3-63 (186)
35 1z06_A RAS-related protein RAB 99.7 9.7E-16 3.3E-20 86.4 9.2 61 10-70 18-79 (189)
36 2j1l_A RHO-related GTP-binding 99.7 3.4E-16 1.1E-20 90.2 7.4 61 10-70 32-92 (214)
37 1x3s_A RAS-related protein RAB 99.7 9.1E-16 3.1E-20 86.4 9.0 62 9-70 12-74 (195)
38 3cpj_B GTP-binding protein YPT 99.7 7.2E-16 2.4E-20 89.2 8.7 64 7-70 8-72 (223)
39 1ek0_A Protein (GTP-binding pr 99.7 1.2E-15 4.1E-20 84.0 9.2 60 11-70 2-62 (170)
40 1zbd_A Rabphilin-3A; G protein 99.7 1.4E-15 4.8E-20 86.5 9.6 62 9-70 5-67 (203)
41 2efe_B Small GTP-binding prote 99.7 1.6E-15 5.3E-20 84.6 9.4 63 8-70 8-71 (181)
42 1g16_A RAS-related protein SEC 99.7 8.5E-16 2.9E-20 84.7 8.2 60 11-70 2-62 (170)
43 2gf9_A RAS-related protein RAB 99.7 2E-15 6.7E-20 85.2 9.8 62 9-70 19-81 (189)
44 1z0j_A RAB-22, RAS-related pro 99.7 1.6E-15 5.6E-20 83.6 9.3 61 10-70 4-65 (170)
45 2p5s_A RAS and EF-hand domain 99.7 6.7E-16 2.3E-20 87.9 7.9 64 7-70 23-87 (199)
46 2q3h_A RAS homolog gene family 99.7 5E-16 1.7E-20 88.2 7.3 62 8-70 16-78 (201)
47 2fg5_A RAB-22B, RAS-related pr 99.7 1.5E-15 5.1E-20 86.0 9.2 62 9-70 20-82 (192)
48 1c1y_A RAS-related protein RAP 99.6 8.2E-16 2.8E-20 84.6 7.8 59 12-70 3-61 (167)
49 3oes_A GTPase rhebl1; small GT 99.6 6.3E-16 2.2E-20 88.1 7.5 64 7-70 19-82 (201)
50 1ky3_A GTP-binding protein YPT 99.6 5.6E-16 1.9E-20 86.3 7.1 63 8-70 4-68 (182)
51 2gco_A H9, RHO-related GTP-bin 99.6 1.1E-15 3.9E-20 87.1 8.5 62 9-70 22-83 (201)
52 2il1_A RAB12; G-protein, GDP, 99.6 9.4E-16 3.2E-20 87.0 8.0 63 8-70 22-85 (192)
53 1oix_A RAS-related protein RAB 99.6 2.7E-15 9.4E-20 85.2 9.8 62 9-70 26-88 (191)
54 3cbq_A GTP-binding protein REM 99.6 5.9E-16 2E-20 88.3 6.7 64 7-70 18-82 (195)
55 2bov_A RAla, RAS-related prote 99.6 1.8E-15 6.1E-20 85.9 8.6 63 8-70 10-72 (206)
56 3bwd_D RAC-like GTP-binding pr 99.6 1E-16 3.5E-21 89.5 3.3 64 7-70 3-66 (182)
57 2g6b_A RAS-related protein RAB 99.6 3.9E-15 1.3E-19 82.9 9.8 62 9-70 7-70 (180)
58 2fv8_A H6, RHO-related GTP-bin 99.6 1.4E-15 4.9E-20 87.1 8.1 61 9-70 22-83 (207)
59 3bc1_A RAS-related protein RAB 99.6 3.2E-15 1.1E-19 83.8 9.3 63 8-70 7-80 (195)
60 1kao_A RAP2A; GTP-binding prot 99.6 2.4E-15 8.3E-20 82.5 8.5 58 12-70 3-61 (167)
61 1u8z_A RAS-related protein RAL 99.6 2.7E-15 9.1E-20 82.4 8.6 60 11-70 3-62 (168)
62 4dsu_A GTPase KRAS, isoform 2B 99.6 2.7E-15 9.3E-20 84.0 8.7 61 10-70 2-62 (189)
63 2f9l_A RAB11B, member RAS onco 99.6 3.7E-15 1.3E-19 84.9 9.2 61 10-70 3-64 (199)
64 2erx_A GTP-binding protein DI- 99.6 2.9E-15 9.8E-20 82.6 8.4 60 11-70 2-61 (172)
65 3cph_A RAS-related protein SEC 99.6 3.4E-15 1.2E-19 85.2 9.0 62 9-70 17-79 (213)
66 2a9k_A RAS-related protein RAL 99.6 3E-15 1E-19 83.6 8.4 62 9-70 15-76 (187)
67 4gzl_A RAS-related C3 botulinu 99.6 2.4E-15 8.2E-20 86.1 8.1 62 9-70 27-88 (204)
68 3gj0_A GTP-binding nuclear pro 99.6 6.4E-16 2.2E-20 89.1 5.5 64 7-70 10-74 (221)
69 2gf0_A GTP-binding protein DI- 99.6 4.1E-15 1.4E-19 84.0 8.3 61 10-70 6-66 (199)
70 3dz8_A RAS-related protein RAB 99.6 4.2E-16 1.5E-20 88.1 3.9 63 7-69 18-81 (191)
71 3con_A GTPase NRAS; structural 99.6 6E-15 2E-19 83.1 8.6 62 9-70 18-79 (190)
72 2f7s_A C25KG, RAS-related prot 99.6 1.9E-15 6.5E-20 86.8 6.6 63 8-70 21-94 (217)
73 2yc2_C IFT27, small RAB-relate 99.6 4.5E-16 1.5E-20 88.4 3.8 62 9-70 17-83 (208)
74 2zej_A Dardarin, leucine-rich 99.6 1.1E-15 3.7E-20 86.2 5.0 59 12-70 2-66 (184)
75 2ce2_X GTPase HRAS; signaling 99.6 9.3E-15 3.2E-19 79.9 8.6 59 12-70 3-61 (166)
76 3t1o_A Gliding protein MGLA; G 99.6 6.4E-16 2.2E-20 87.0 3.7 63 7-70 9-84 (198)
77 2nzj_A GTP-binding protein REM 99.6 1.3E-14 4.5E-19 80.3 8.2 59 11-70 3-62 (175)
78 2g3y_A GTP-binding protein GEM 99.6 1.3E-14 4.5E-19 84.3 8.4 62 8-70 33-97 (211)
79 1zd9_A ADP-ribosylation factor 99.6 1.2E-14 4.2E-19 82.0 7.6 59 9-70 19-77 (188)
80 3q85_A GTP-binding protein REM 99.6 1.7E-14 5.7E-19 79.6 8.0 59 12-70 2-61 (169)
81 4bas_A ADP-ribosylation factor 99.6 2.5E-14 8.4E-19 80.8 7.8 60 8-70 13-73 (199)
82 3l0i_B RAS-related protein RAB 99.5 9E-16 3.1E-20 87.4 1.6 63 8-70 29-92 (199)
83 2cjw_A GTP-binding protein GEM 99.5 3.3E-14 1.1E-18 80.9 8.1 60 10-70 4-66 (192)
84 2wji_A Ferrous iron transport 99.5 3.9E-14 1.3E-18 78.6 7.8 58 12-70 3-60 (165)
85 2fh5_B SR-beta, signal recogni 99.5 1.8E-14 6.2E-19 82.5 6.1 59 9-70 4-64 (214)
86 2lkc_A Translation initiation 99.5 2.5E-14 8.7E-19 79.5 6.4 60 10-70 6-65 (178)
87 2wkq_A NPH1-1, RAS-related C3 99.5 4.6E-14 1.6E-18 85.0 8.0 61 10-70 153-213 (332)
88 2wjg_A FEOB, ferrous iron tran 99.5 6E-14 2.1E-18 78.7 7.8 59 11-70 6-64 (188)
89 4djt_A GTP-binding nuclear pro 99.5 1.8E-14 6.3E-19 82.7 5.4 63 8-70 7-71 (218)
90 1zj6_A ADP-ribosylation factor 99.5 3.9E-14 1.3E-18 79.7 6.3 58 9-70 13-70 (187)
91 3r7w_B Gtpase2, GTP-binding pr 99.5 8.8E-15 3E-19 90.1 3.9 53 14-70 1-56 (331)
92 2h57_A ADP-ribosylation factor 99.5 4.5E-14 1.5E-18 79.6 6.3 59 9-70 18-77 (190)
93 3th5_A RAS-related C3 botulinu 99.3 1.3E-15 4.6E-20 86.8 0.0 61 10-70 28-88 (204)
94 1ksh_A ARF-like protein 2; sma 99.5 9.2E-14 3.1E-18 77.9 7.5 57 10-70 16-72 (186)
95 1r8s_A ADP-ribosylation factor 99.5 5.9E-14 2E-18 77.1 6.4 54 13-70 1-54 (164)
96 3q72_A GTP-binding protein RAD 99.5 6.7E-14 2.3E-18 77.0 6.3 58 12-70 2-59 (166)
97 1m2o_B GTP-binding protein SAR 99.5 2.2E-13 7.5E-18 77.2 8.5 57 10-70 21-77 (190)
98 1fzq_A ADP-ribosylation factor 99.5 3.6E-14 1.2E-18 79.8 4.9 58 9-70 13-70 (181)
99 2b6h_A ADP-ribosylation factor 99.5 9.5E-14 3.2E-18 78.8 6.5 58 9-70 26-83 (192)
100 1upt_A ARL1, ADP-ribosylation 99.5 2.4E-13 8.1E-18 75.0 7.8 56 11-70 6-61 (171)
101 2h17_A ADP-ribosylation factor 99.5 6.4E-14 2.2E-18 78.6 5.3 59 8-70 17-75 (181)
102 1f6b_A SAR1; gtpases, N-termin 99.5 1E-13 3.4E-18 79.1 5.9 57 10-70 23-79 (198)
103 3r7w_A Gtpase1, GTP-binding pr 99.5 2.5E-13 8.4E-18 82.4 7.4 58 11-70 2-62 (307)
104 1svi_A GTP-binding protein YSX 99.4 2.4E-13 8.1E-18 76.6 6.4 60 8-69 19-78 (195)
105 1moz_A ARL1, ADP-ribosylation 99.4 1E-13 3.5E-18 77.4 4.8 57 10-70 16-72 (183)
106 2x77_A ADP-ribosylation factor 99.4 2.2E-13 7.7E-18 76.6 5.5 57 10-70 20-76 (189)
107 3t5d_A Septin-7; GTP-binding p 99.4 2.8E-13 9.6E-18 80.9 5.8 63 8-70 4-75 (274)
108 3llu_A RAS-related GTP-binding 99.4 1.5E-13 5.3E-18 78.0 3.7 60 8-70 16-79 (196)
109 2gj8_A MNME, tRNA modification 99.4 3.1E-12 1.1E-16 71.5 8.7 59 11-70 3-62 (172)
110 2dyk_A GTP-binding protein; GT 99.4 1.5E-12 5E-17 71.2 7.0 57 13-70 2-59 (161)
111 2cxx_A Probable GTP-binding pr 99.4 5.5E-13 1.9E-17 74.7 5.4 52 13-69 2-53 (190)
112 3lxx_A GTPase IMAP family memb 99.4 2.4E-12 8.1E-17 75.3 8.1 60 9-69 26-87 (239)
113 3dpu_A RAB family protein; roc 99.4 1.7E-13 5.8E-18 88.1 3.5 63 8-70 37-108 (535)
114 2qu8_A Putative nucleolar GTP- 99.4 1.4E-12 4.9E-17 75.6 6.8 60 10-70 27-86 (228)
115 3a1s_A Iron(II) transport prot 99.4 2.4E-12 8.2E-17 76.6 7.8 60 10-70 3-62 (258)
116 1nrj_B SR-beta, signal recogni 99.3 5.1E-13 1.7E-17 76.6 3.1 54 9-70 9-65 (218)
117 3k53_A Ferrous iron transport 99.3 6.8E-12 2.3E-16 74.7 7.4 58 12-70 3-60 (271)
118 2xtp_A GTPase IMAP family memb 99.3 1.3E-11 4.5E-16 72.8 8.3 60 10-70 20-81 (260)
119 3o47_A ADP-ribosylation factor 99.3 2.2E-12 7.5E-17 79.0 4.8 56 11-70 164-219 (329)
120 3iby_A Ferrous iron transport 99.3 1E-11 3.4E-16 73.9 7.1 57 13-70 2-58 (256)
121 3pqc_A Probable GTP-binding pr 99.3 1.3E-11 4.4E-16 69.2 7.2 58 9-69 20-77 (195)
122 2ged_A SR-beta, signal recogni 99.3 8.7E-13 3E-17 74.3 2.2 53 10-70 46-101 (193)
123 3lvq_E ARF-GAP with SH3 domain 99.3 8.5E-12 2.9E-16 79.4 6.6 57 10-70 320-376 (497)
124 3i8s_A Ferrous iron transport 99.3 1.1E-11 3.7E-16 74.2 6.5 58 12-70 3-60 (274)
125 3c5h_A Glucocorticoid receptor 99.3 5.2E-13 1.8E-17 79.1 0.4 59 8-66 15-101 (255)
126 3def_A T7I23.11 protein; chlor 99.3 6.1E-11 2.1E-15 70.3 9.0 59 10-70 34-94 (262)
127 3b1v_A Ferrous iron uptake tra 99.2 7.7E-12 2.6E-16 75.0 4.0 57 12-70 3-59 (272)
128 3lxw_A GTPase IMAP family memb 99.2 6.4E-11 2.2E-15 69.9 7.7 61 9-70 18-80 (247)
129 4dhe_A Probable GTP-binding pr 99.2 1.7E-11 5.8E-16 70.4 5.0 61 9-69 26-88 (223)
130 2qag_A Septin-2, protein NEDD5 99.2 2.1E-11 7.2E-16 75.5 5.1 62 9-70 34-105 (361)
131 1h65_A Chloroplast outer envel 99.2 1.1E-10 3.8E-15 69.4 7.7 59 10-70 37-97 (270)
132 1mky_A Probable GTP-binding pr 99.2 5E-11 1.7E-15 75.2 6.4 57 13-70 2-59 (439)
133 2hjg_A GTP-binding protein ENG 99.2 2E-11 6.8E-16 77.0 3.7 59 11-70 174-233 (436)
134 1wf3_A GTP-binding protein; GT 99.2 3.1E-10 1E-14 68.9 8.7 59 11-70 6-65 (301)
135 1pui_A ENGB, probable GTP-bind 99.2 2.6E-11 8.8E-16 69.0 3.8 60 9-70 23-82 (210)
136 3iev_A GTP-binding protein ERA 99.1 4.7E-10 1.6E-14 68.1 8.4 64 7-70 5-69 (308)
137 4dcu_A GTP-binding protein ENG 99.1 6.4E-11 2.2E-15 75.0 4.0 59 10-69 193-252 (456)
138 3gee_A MNME, tRNA modification 99.1 1.2E-10 4.3E-15 74.4 4.9 59 11-70 232-291 (476)
139 2qnr_A Septin-2, protein NEDD5 99.1 1.3E-10 4.3E-15 70.6 4.7 62 9-70 15-86 (301)
140 1mky_A Probable GTP-binding pr 99.1 4.1E-10 1.4E-14 71.0 6.3 58 11-70 179-238 (439)
141 3geh_A MNME, tRNA modification 99.0 1E-10 3.6E-15 74.6 3.5 58 11-69 223-281 (462)
142 1xzp_A Probable tRNA modificat 99.0 1.5E-10 5.2E-15 74.1 2.9 57 12-70 243-301 (482)
143 2qag_C Septin-7; cell cycle, c 99.0 1.1E-09 3.8E-14 69.2 6.3 62 9-70 28-98 (418)
144 2qtf_A Protein HFLX, GTP-bindi 99.0 1.2E-09 4.1E-14 67.9 6.2 58 12-70 178-236 (364)
145 2e87_A Hypothetical protein PH 99.0 2.4E-09 8.1E-14 66.0 7.1 60 10-70 165-224 (357)
146 2aka_B Dynamin-1; fusion prote 99.0 2E-09 6.8E-14 64.2 6.6 29 10-38 24-52 (299)
147 3qq5_A Small GTP-binding prote 99.0 1.4E-10 4.8E-15 73.4 1.6 62 9-70 31-93 (423)
148 1jal_A YCHF protein; nucleotid 98.9 8.1E-10 2.8E-14 68.8 4.4 57 12-70 2-76 (363)
149 1ega_A Protein (GTP-binding pr 98.9 2.7E-09 9.2E-14 64.6 6.5 59 10-70 6-66 (301)
150 2ohf_A Protein OLA1, GTP-bindi 98.9 2E-09 6.9E-14 67.7 5.6 61 10-70 20-96 (396)
151 3izy_P Translation initiation 98.9 3.7E-11 1.3E-15 77.9 -2.6 60 11-70 3-62 (537)
152 1s0u_A EIF-2-gamma, translatio 98.9 8.5E-09 2.9E-13 64.5 8.0 61 9-69 5-90 (408)
153 4dcu_A GTP-binding protein ENG 98.9 5E-10 1.7E-14 70.9 2.5 58 11-69 22-80 (456)
154 3j2k_7 ERF3, eukaryotic polype 98.9 7E-09 2.4E-13 65.6 7.6 61 9-70 14-105 (439)
155 2hjg_A GTP-binding protein ENG 98.9 4.5E-10 1.5E-14 70.8 1.7 57 12-70 3-61 (436)
156 1wxq_A GTP-binding protein; st 98.9 4.9E-09 1.7E-13 65.8 5.9 25 13-37 1-25 (397)
157 1kk1_A EIF2gamma; initiation o 98.9 2.2E-08 7.6E-13 62.7 8.8 61 9-69 7-92 (410)
158 3cnl_A YLQF, putative uncharac 98.8 3E-09 1E-13 63.5 3.4 55 13-70 100-154 (262)
159 1wb1_A Translation elongation 98.8 1.4E-08 4.8E-13 65.0 6.4 61 8-69 15-82 (482)
160 3p26_A Elongation factor 1 alp 98.8 9.8E-09 3.4E-13 65.5 5.4 27 9-35 30-56 (483)
161 2hf9_A Probable hydrogenase ni 98.8 9E-10 3.1E-14 63.4 0.4 40 11-50 37-76 (226)
162 1lnz_A SPO0B-associated GTP-bi 98.8 2.1E-09 7.1E-14 66.4 1.8 55 13-69 159-215 (342)
163 2x2e_A Dynamin-1; nitration, h 98.7 1.3E-08 4.5E-13 62.6 5.0 28 11-38 30-57 (353)
164 3t34_A Dynamin-related protein 98.7 2.3E-08 7.9E-13 61.6 5.9 27 12-38 34-60 (360)
165 1jny_A EF-1-alpha, elongation 98.7 1E-08 3.6E-13 64.7 3.9 26 10-35 4-29 (435)
166 1jwy_B Dynamin A GTPase domain 98.7 4.3E-08 1.5E-12 58.9 6.4 28 10-37 22-49 (315)
167 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 6.1E-08 2.1E-12 60.9 7.2 61 9-69 17-94 (392)
168 1dar_A EF-G, elongation factor 98.7 5.8E-08 2E-12 64.4 6.7 67 1-70 1-87 (691)
169 2dby_A GTP-binding protein; GD 98.7 2.8E-08 9.5E-13 62.0 4.8 24 13-36 2-25 (368)
170 3izq_1 HBS1P, elongation facto 98.7 4.6E-08 1.6E-12 64.2 5.6 27 9-35 164-190 (611)
171 3mca_A HBS1, elongation factor 98.6 1.3E-08 4.3E-13 66.6 2.8 25 9-33 174-198 (592)
172 2j69_A Bacterial dynamin-like 98.6 7.3E-08 2.5E-12 64.0 5.5 36 10-45 67-103 (695)
173 1zun_B Sulfate adenylate trans 98.6 1.6E-07 5.4E-12 59.3 6.6 26 10-35 22-47 (434)
174 2c78_A Elongation factor TU-A; 98.6 3.9E-08 1.3E-12 61.4 3.7 63 8-70 7-85 (405)
175 1n0u_A EF-2, elongation factor 98.6 1.6E-07 5.4E-12 63.5 6.8 27 9-35 16-42 (842)
176 1puj_A YLQF, conserved hypothe 98.6 1E-07 3.5E-12 57.4 5.2 56 11-70 119-175 (282)
177 1f60_A Elongation factor EEF1A 98.6 4.4E-08 1.5E-12 62.3 3.8 26 10-35 5-30 (458)
178 1zo1_I IF2, translation initia 98.6 5.8E-09 2E-13 67.2 -0.4 59 11-70 3-61 (501)
179 3tr5_A RF-3, peptide chain rel 98.6 4.1E-08 1.4E-12 63.5 3.5 23 11-33 12-34 (528)
180 3sjy_A Translation initiation 98.6 3.4E-07 1.2E-11 57.2 7.4 29 8-36 4-32 (403)
181 2dy1_A Elongation factor G; tr 98.5 1.5E-07 5.3E-12 62.2 5.9 61 10-70 7-84 (665)
182 4a9a_A Ribosome-interacting GT 98.5 2.8E-07 9.5E-12 57.7 6.5 58 10-69 70-128 (376)
183 2h5e_A Peptide chain release f 98.5 2.2E-07 7.4E-12 60.2 5.7 25 10-34 11-35 (529)
184 1d2e_A Elongation factor TU (E 98.5 3.1E-07 1E-11 57.4 6.0 24 12-35 3-26 (397)
185 2qpt_A EH domain-containing pr 98.5 1.8E-07 6E-12 60.8 4.8 29 10-38 63-91 (550)
186 1r5b_A Eukaryotic peptide chai 98.5 2.3E-07 7.8E-12 59.1 5.0 26 9-34 40-65 (467)
187 3avx_A Elongation factor TS, e 98.4 2.2E-07 7.6E-12 65.0 4.0 63 8-70 292-369 (1289)
188 2elf_A Protein translation elo 98.4 1.9E-07 6.5E-12 58.1 3.1 48 14-70 23-70 (370)
189 2ywe_A GTP-binding protein LEP 98.4 1.3E-06 4.6E-11 57.4 7.1 25 10-34 4-28 (600)
190 2xex_A Elongation factor G; GT 98.4 1.2E-06 4.2E-11 58.2 6.9 26 9-34 7-32 (693)
191 2rdo_7 EF-G, elongation factor 98.4 1.2E-06 4.1E-11 58.4 6.9 26 9-34 7-32 (704)
192 3cb4_D GTP-binding protein LEP 98.4 4.6E-07 1.6E-11 59.5 4.8 60 11-70 3-81 (599)
193 1g7s_A Translation initiation 98.3 3E-07 1E-11 60.3 3.4 60 11-70 4-80 (594)
194 1udx_A The GTP-binding protein 98.3 7E-07 2.4E-11 56.5 4.5 57 13-70 158-215 (416)
195 1f5n_A Interferon-induced guan 98.2 2.5E-06 8.5E-11 56.1 5.7 59 10-70 36-101 (592)
196 3sop_A Neuronal-specific septi 98.1 5.3E-06 1.8E-10 49.7 4.4 24 12-35 2-25 (270)
197 3h2y_A GTPase family protein; 98.0 9.4E-06 3.2E-10 50.5 4.3 23 13-35 161-183 (368)
198 3ec1_A YQEH GTPase; atnos1, at 97.9 6.9E-06 2.4E-10 51.0 3.3 53 13-69 163-221 (369)
199 2wsm_A Hydrogenase expression/ 97.8 1.2E-05 4E-10 45.9 2.8 26 11-36 29-54 (221)
200 2qag_B Septin-6, protein NEDD5 97.8 8.5E-05 2.9E-09 47.3 6.5 28 10-37 40-67 (427)
201 3zvr_A Dynamin-1; hydrolase, D 97.7 0.00029 9.9E-09 47.7 8.0 27 11-37 50-76 (772)
202 1kgd_A CASK, peripheral plasma 97.6 5.2E-05 1.8E-09 42.4 3.3 22 13-34 6-27 (180)
203 1ye8_A Protein THEP1, hypothet 97.6 7.2E-05 2.5E-09 42.2 3.5 21 14-34 2-22 (178)
204 1knq_A Gluconate kinase; ALFA/ 97.5 0.0001 3.4E-09 40.7 3.8 24 11-34 7-30 (175)
205 3ney_A 55 kDa erythrocyte memb 97.5 0.0001 3.4E-09 42.5 3.7 24 11-34 18-41 (197)
206 1lvg_A Guanylate kinase, GMP k 97.5 8.3E-05 2.8E-09 42.3 3.3 22 13-34 5-26 (198)
207 1ex7_A Guanylate kinase; subst 97.5 9.1E-05 3.1E-09 42.3 3.3 20 15-34 4-23 (186)
208 3asz_A Uridine kinase; cytidin 97.5 0.00014 4.9E-09 41.2 3.8 24 11-34 5-28 (211)
209 1y63_A LMAJ004144AAA protein; 97.4 0.00016 5.4E-09 40.5 3.7 29 7-35 5-33 (184)
210 1zp6_A Hypothetical protein AT 97.4 0.00013 4.5E-09 40.6 3.3 23 13-35 10-32 (191)
211 3tr0_A Guanylate kinase, GMP k 97.4 0.00013 4.4E-09 41.1 3.2 21 14-34 9-29 (205)
212 3a00_A Guanylate kinase, GMP k 97.4 0.00012 4.2E-09 41.0 3.1 20 15-34 4-23 (186)
213 1s96_A Guanylate kinase, GMP k 97.4 0.00014 4.8E-09 42.3 3.2 22 13-34 17-38 (219)
214 3vqt_A RF-3, peptide chain rel 97.4 0.00034 1.1E-08 45.6 5.3 24 10-33 29-52 (548)
215 3tau_A Guanylate kinase, GMP k 97.4 0.00014 4.9E-09 41.5 3.2 23 13-35 9-31 (208)
216 3vaa_A Shikimate kinase, SK; s 97.4 0.00017 6E-09 40.7 3.5 23 12-34 25-47 (199)
217 1znw_A Guanylate kinase, GMP k 97.4 0.00016 5.3E-09 41.2 3.2 22 13-34 21-42 (207)
218 1z6g_A Guanylate kinase; struc 97.4 0.00016 5.3E-09 41.7 3.2 23 12-34 23-45 (218)
219 3kb2_A SPBC2 prophage-derived 97.3 0.00019 6.6E-09 39.1 3.2 21 14-34 3-23 (173)
220 2www_A Methylmalonic aciduria 97.3 0.00024 8.1E-09 43.8 3.7 24 11-34 73-96 (349)
221 2qor_A Guanylate kinase; phosp 97.3 0.0002 7E-09 40.6 3.2 22 13-34 13-34 (204)
222 4eun_A Thermoresistant glucoki 97.3 0.00025 8.6E-09 40.1 3.5 24 11-34 28-51 (200)
223 4gp7_A Metallophosphoesterase; 97.3 0.00017 5.8E-09 40.1 2.7 19 13-31 10-28 (171)
224 1jbk_A CLPB protein; beta barr 97.3 0.00024 8.2E-09 38.9 3.2 23 13-35 44-66 (195)
225 1qf9_A UMP/CMP kinase, protein 97.3 0.00039 1.3E-08 38.5 4.1 22 13-34 7-28 (194)
226 2j41_A Guanylate kinase; GMP, 97.2 0.0003 1E-08 39.5 3.5 23 13-35 7-29 (207)
227 1kag_A SKI, shikimate kinase I 97.2 0.00028 9.5E-09 38.7 3.2 22 13-34 5-26 (173)
228 3c8u_A Fructokinase; YP_612366 97.2 0.00028 9.7E-09 40.2 3.3 24 10-33 20-43 (208)
229 2wwf_A Thymidilate kinase, put 97.2 0.00042 1.4E-08 39.1 4.0 23 12-34 10-32 (212)
230 1ly1_A Polynucleotide kinase; 97.2 0.0003 1E-08 38.6 3.3 22 13-34 3-24 (181)
231 3fb4_A Adenylate kinase; psych 97.2 0.00032 1.1E-08 39.9 3.4 21 14-34 2-22 (216)
232 3dl0_A Adenylate kinase; phosp 97.2 0.00033 1.1E-08 39.9 3.4 21 14-34 2-22 (216)
233 1qhx_A CPT, protein (chloramph 97.2 0.00032 1.1E-08 38.7 3.3 22 13-34 4-25 (178)
234 1htw_A HI0065; nucleotide-bind 97.2 0.00031 1.1E-08 38.9 3.2 24 13-36 34-57 (158)
235 3lw7_A Adenylate kinase relate 97.2 0.00032 1.1E-08 38.1 3.2 20 13-32 2-21 (179)
236 1nks_A Adenylate kinase; therm 97.2 0.00043 1.5E-08 38.3 3.7 21 14-34 3-23 (194)
237 2bdt_A BH3686; alpha-beta prot 97.2 0.00033 1.1E-08 39.1 3.2 21 14-34 4-24 (189)
238 3t61_A Gluconokinase; PSI-biol 97.2 0.00032 1.1E-08 39.6 3.2 22 13-34 19-40 (202)
239 1uf9_A TT1252 protein; P-loop, 97.2 0.00049 1.7E-08 38.5 3.9 25 11-35 7-31 (203)
240 2bbw_A Adenylate kinase 4, AK4 97.2 0.00036 1.2E-08 40.6 3.4 21 13-33 28-48 (246)
241 4a74_A DNA repair and recombin 97.2 0.00036 1.2E-08 39.7 3.3 22 13-34 26-47 (231)
242 2ehv_A Hypothetical protein PH 97.2 0.00034 1.2E-08 40.3 3.2 21 13-33 31-51 (251)
243 2jaq_A Deoxyguanosine kinase; 97.2 0.00042 1.4E-08 38.7 3.4 21 14-34 2-22 (205)
244 3ec2_A DNA replication protein 97.1 0.00029 9.9E-09 39.1 2.6 23 12-34 38-60 (180)
245 2rhm_A Putative kinase; P-loop 97.1 0.0006 2E-08 37.9 3.9 22 13-34 6-27 (193)
246 3uie_A Adenylyl-sulfate kinase 97.1 0.00048 1.6E-08 38.9 3.5 24 11-34 24-47 (200)
247 2if2_A Dephospho-COA kinase; a 97.1 0.00052 1.8E-08 38.6 3.6 22 13-34 2-23 (204)
248 3tif_A Uncharacterized ABC tra 97.1 0.00036 1.2E-08 40.9 2.9 22 13-34 32-53 (235)
249 3trf_A Shikimate kinase, SK; a 97.1 0.00051 1.7E-08 38.1 3.4 22 13-34 6-27 (185)
250 3ohm_A Guanine nucleotide-bind 97.1 0.0015 5.2E-08 40.2 5.6 27 41-70 151-177 (327)
251 1kht_A Adenylate kinase; phosp 97.1 0.00056 1.9E-08 37.8 3.4 22 13-34 4-25 (192)
252 2cdn_A Adenylate kinase; phosp 97.1 0.00066 2.3E-08 38.2 3.8 25 10-34 18-42 (201)
253 3p32_A Probable GTPase RV1496/ 97.1 0.00059 2E-08 42.0 3.8 25 10-34 77-101 (355)
254 3lnc_A Guanylate kinase, GMP k 97.1 0.00023 7.9E-09 41.1 1.9 21 13-33 28-48 (231)
255 2p65_A Hypothetical protein PF 97.1 0.00032 1.1E-08 38.4 2.4 24 12-35 43-66 (187)
256 3cm0_A Adenylate kinase; ATP-b 97.1 0.00072 2.5E-08 37.4 3.8 23 12-34 4-26 (186)
257 2i3b_A HCR-ntpase, human cance 97.1 0.00049 1.7E-08 39.2 3.1 21 14-34 3-23 (189)
258 2pcj_A ABC transporter, lipopr 97.1 0.00047 1.6E-08 40.1 3.1 21 14-34 32-52 (224)
259 1cke_A CK, MSSA, protein (cyti 97.0 0.00062 2.1E-08 38.8 3.5 22 13-34 6-27 (227)
260 1e4v_A Adenylate kinase; trans 97.0 0.00066 2.2E-08 38.7 3.6 21 14-34 2-22 (214)
261 2jeo_A Uridine-cytidine kinase 97.0 0.00072 2.5E-08 39.4 3.7 25 10-34 23-47 (245)
262 3bos_A Putative DNA replicatio 97.0 0.00057 2E-08 38.9 3.2 23 12-34 52-74 (242)
263 1lw7_A Transcriptional regulat 97.0 0.00044 1.5E-08 42.6 2.9 23 12-34 170-192 (365)
264 1ukz_A Uridylate kinase; trans 97.0 0.0009 3.1E-08 37.6 3.9 24 11-34 14-37 (203)
265 3tlx_A Adenylate kinase 2; str 97.0 0.00084 2.9E-08 39.3 3.8 24 11-34 28-51 (243)
266 3sr0_A Adenylate kinase; phosp 97.0 0.00071 2.4E-08 39.0 3.4 21 14-34 2-22 (206)
267 1b0u_A Histidine permease; ABC 97.0 0.00054 1.8E-08 40.7 3.0 21 14-34 34-54 (262)
268 2onk_A Molybdate/tungstate ABC 97.0 0.00062 2.1E-08 40.1 3.2 21 14-34 26-46 (240)
269 3be4_A Adenylate kinase; malar 97.0 0.00081 2.8E-08 38.5 3.6 23 12-34 5-27 (217)
270 2qt1_A Nicotinamide riboside k 97.0 0.0011 3.7E-08 37.5 4.1 25 10-34 19-43 (207)
271 1np6_A Molybdopterin-guanine d 97.0 0.00069 2.3E-08 38.2 3.2 22 13-34 7-28 (174)
272 2plr_A DTMP kinase, probable t 97.0 0.00085 2.9E-08 37.7 3.6 22 13-34 5-26 (213)
273 1njg_A DNA polymerase III subu 97.0 0.00067 2.3E-08 38.2 3.2 21 14-34 47-67 (250)
274 2chg_A Replication factor C sm 97.0 0.00069 2.4E-08 37.8 3.2 21 14-34 40-60 (226)
275 1via_A Shikimate kinase; struc 97.0 0.00069 2.4E-08 37.4 3.2 21 14-34 6-26 (175)
276 1ixz_A ATP-dependent metallopr 97.0 0.00069 2.3E-08 39.5 3.3 20 15-34 52-71 (254)
277 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00067 2.3E-08 38.5 3.1 21 14-34 25-45 (235)
278 2ff7_A Alpha-hemolysin translo 97.0 0.00065 2.2E-08 40.1 3.1 21 14-34 37-57 (247)
279 1zcb_A G alpha I/13; GTP-bindi 97.0 0.00074 2.5E-08 42.0 3.5 23 10-32 31-53 (362)
280 1zd8_A GTP:AMP phosphotransfer 97.0 0.00087 3E-08 38.5 3.6 22 13-34 8-29 (227)
281 1nn5_A Similar to deoxythymidy 97.0 0.00094 3.2E-08 37.7 3.7 23 12-34 9-31 (215)
282 2cbz_A Multidrug resistance-as 97.0 0.00066 2.3E-08 39.8 3.1 21 14-34 33-53 (237)
283 2rcn_A Probable GTPase ENGC; Y 96.9 0.00065 2.2E-08 42.3 3.2 23 14-36 217-239 (358)
284 2yv5_A YJEQ protein; hydrolase 96.9 0.00065 2.2E-08 41.1 3.1 21 13-33 166-186 (302)
285 4fid_A G protein alpha subunit 96.9 0.00075 2.5E-08 41.8 3.4 19 10-28 3-21 (340)
286 3gfo_A Cobalt import ATP-bindi 96.9 0.00062 2.1E-08 40.9 3.0 21 14-34 36-56 (275)
287 1mv5_A LMRA, multidrug resista 96.9 0.00073 2.5E-08 39.7 3.2 22 13-34 29-50 (243)
288 1aky_A Adenylate kinase; ATP:A 96.9 0.00092 3.1E-08 38.2 3.5 22 13-34 5-26 (220)
289 2eyu_A Twitching motility prot 96.9 0.00076 2.6E-08 40.1 3.2 23 12-34 25-47 (261)
290 1tev_A UMP-CMP kinase; ploop, 96.9 0.0011 3.6E-08 36.8 3.6 22 13-34 4-25 (196)
291 1zak_A Adenylate kinase; ATP:A 96.9 0.00088 3E-08 38.3 3.4 22 13-34 6-27 (222)
292 2pt5_A Shikimate kinase, SK; a 96.9 0.00097 3.3E-08 36.3 3.4 21 14-34 2-22 (168)
293 1jjv_A Dephospho-COA kinase; P 96.9 0.00097 3.3E-08 37.6 3.5 22 13-34 3-24 (206)
294 2v9p_A Replication protein E1; 96.9 0.00084 2.9E-08 41.0 3.4 24 10-33 124-147 (305)
295 1bif_A 6-phosphofructo-2-kinas 96.9 0.00092 3.2E-08 42.5 3.7 25 11-35 38-62 (469)
296 3iij_A Coilin-interacting nucl 96.9 0.00087 3E-08 37.1 3.2 23 12-34 11-33 (180)
297 2qm8_A GTPase/ATPase; G protei 96.9 0.00084 2.9E-08 41.2 3.4 24 10-33 53-76 (337)
298 1g6h_A High-affinity branched- 96.9 0.00069 2.4E-08 40.1 2.9 21 14-34 35-55 (257)
299 2zu0_C Probable ATP-dependent 96.9 0.00081 2.8E-08 40.1 3.2 22 14-35 48-69 (267)
300 2d2e_A SUFC protein; ABC-ATPas 96.9 0.0008 2.7E-08 39.7 3.1 22 14-35 31-52 (250)
301 1odf_A YGR205W, hypothetical 3 96.9 0.0012 4.1E-08 39.9 3.9 24 10-33 29-52 (290)
302 2v54_A DTMP kinase, thymidylat 96.9 0.0012 4.1E-08 37.0 3.7 23 13-35 5-27 (204)
303 1u0l_A Probable GTPase ENGC; p 96.9 0.00089 3E-08 40.4 3.3 24 13-36 170-193 (301)
304 2pze_A Cystic fibrosis transme 96.9 0.00086 2.9E-08 39.1 3.2 21 14-34 36-56 (229)
305 2c95_A Adenylate kinase 1; tra 96.9 0.0011 3.8E-08 36.8 3.6 22 13-34 10-31 (196)
306 2yvu_A Probable adenylyl-sulfa 96.9 0.0014 4.9E-08 36.4 4.0 24 11-34 12-35 (186)
307 2olj_A Amino acid ABC transpor 96.9 0.00076 2.6E-08 40.2 3.0 21 14-34 52-72 (263)
308 1sgw_A Putative ABC transporte 96.9 0.00079 2.7E-08 39.0 3.0 21 14-34 37-57 (214)
309 2vp4_A Deoxynucleoside kinase; 96.9 0.00082 2.8E-08 38.9 3.0 25 10-34 18-42 (230)
310 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00085 2.9E-08 41.8 3.3 21 14-34 32-52 (359)
311 4g1u_C Hemin import ATP-bindin 96.9 0.00075 2.5E-08 40.3 2.9 21 14-34 39-59 (266)
312 1gvn_B Zeta; postsegregational 96.9 0.00099 3.4E-08 40.0 3.5 23 12-34 33-55 (287)
313 2f1r_A Molybdopterin-guanine d 96.9 0.00041 1.4E-08 39.0 1.7 21 14-34 4-24 (171)
314 1ji0_A ABC transporter; ATP bi 96.9 0.00077 2.6E-08 39.5 2.9 21 14-34 34-54 (240)
315 1tq4_A IIGP1, interferon-induc 96.9 0.002 7E-08 40.8 5.0 24 12-35 69-92 (413)
316 2w58_A DNAI, primosome compone 96.9 0.00096 3.3E-08 37.5 3.2 22 13-34 55-76 (202)
317 1lv7_A FTSH; alpha/beta domain 96.9 0.00094 3.2E-08 38.9 3.2 22 13-34 46-67 (257)
318 2bwj_A Adenylate kinase 5; pho 96.9 0.0012 4.2E-08 36.7 3.6 22 13-34 13-34 (199)
319 2ghi_A Transport protein; mult 96.9 0.00088 3E-08 39.8 3.1 22 13-34 47-68 (260)
320 3aez_A Pantothenate kinase; tr 96.9 0.00091 3.1E-08 40.8 3.2 25 10-34 88-112 (312)
321 2ixe_A Antigen peptide transpo 96.8 0.0009 3.1E-08 40.0 3.1 21 14-34 47-67 (271)
322 2qi9_C Vitamin B12 import ATP- 96.8 0.00085 2.9E-08 39.7 3.0 21 14-34 28-48 (249)
323 2cvh_A DNA repair and recombin 96.8 0.00096 3.3E-08 37.7 3.1 22 13-34 21-42 (220)
324 2ihy_A ABC transporter, ATP-bi 96.8 0.00095 3.2E-08 40.1 3.2 21 14-34 49-69 (279)
325 1n0w_A DNA repair protein RAD5 96.8 0.001 3.5E-08 38.1 3.2 23 13-35 25-47 (243)
326 2xb4_A Adenylate kinase; ATP-b 96.8 0.0012 4E-08 38.0 3.4 21 14-34 2-22 (223)
327 1vpl_A ABC transporter, ATP-bi 96.8 0.00091 3.1E-08 39.7 3.0 21 14-34 43-63 (256)
328 1iy2_A ATP-dependent metallopr 96.8 0.0011 3.6E-08 39.3 3.3 20 15-34 76-95 (278)
329 1rj9_A FTSY, signal recognitio 96.8 0.001 3.4E-08 40.5 3.2 22 12-33 102-123 (304)
330 2ze6_A Isopentenyl transferase 96.8 0.0011 3.7E-08 39.1 3.3 21 14-34 3-23 (253)
331 3syl_A Protein CBBX; photosynt 96.8 0.0016 5.5E-08 38.7 4.0 23 11-33 66-88 (309)
332 2z0h_A DTMP kinase, thymidylat 96.8 0.0013 4.5E-08 36.6 3.4 21 14-34 2-22 (197)
333 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0011 3.8E-08 38.4 3.2 22 13-34 40-61 (262)
334 2x8a_A Nuclear valosin-contain 96.8 0.0011 3.6E-08 39.6 3.1 20 15-34 47-66 (274)
335 1cr0_A DNA primase/helicase; R 96.8 0.0011 3.8E-08 39.4 3.3 21 14-34 37-57 (296)
336 2pbr_A DTMP kinase, thymidylat 96.8 0.0013 4.6E-08 36.4 3.4 21 14-34 2-22 (195)
337 1in4_A RUVB, holliday junction 96.8 0.0011 3.6E-08 40.4 3.2 22 13-34 52-73 (334)
338 1rz3_A Hypothetical protein rb 96.8 0.0019 6.5E-08 36.6 4.0 24 11-34 21-44 (201)
339 2yz2_A Putative ABC transporte 96.8 0.00098 3.3E-08 39.7 2.9 21 14-34 35-55 (266)
340 3h4m_A Proteasome-activating n 96.8 0.0011 3.8E-08 39.0 3.1 23 12-34 51-73 (285)
341 2nq2_C Hypothetical ABC transp 96.8 0.001 3.4E-08 39.4 2.9 21 14-34 33-53 (253)
342 2qby_A CDC6 homolog 1, cell di 96.8 0.0012 4.2E-08 39.9 3.4 23 12-34 45-67 (386)
343 1ak2_A Adenylate kinase isoenz 96.8 0.0015 5.1E-08 37.7 3.6 23 12-34 16-38 (233)
344 3b85_A Phosphate starvation-in 96.8 0.00072 2.5E-08 39.0 2.2 22 14-35 24-45 (208)
345 3rlf_A Maltose/maltodextrin im 96.8 0.0011 3.8E-08 41.6 3.2 21 14-34 31-51 (381)
346 2pjz_A Hypothetical protein ST 96.8 0.0012 4.1E-08 39.4 3.2 22 14-35 32-53 (263)
347 2qen_A Walker-type ATPase; unk 96.8 0.0012 4.2E-08 39.5 3.3 23 13-35 32-54 (350)
348 3t15_A Ribulose bisphosphate c 96.8 0.0013 4.5E-08 39.4 3.4 22 13-34 37-58 (293)
349 1z47_A CYSA, putative ABC-tran 96.8 0.0011 3.9E-08 41.2 3.1 21 14-34 43-63 (355)
350 1e6c_A Shikimate kinase; phosp 96.8 0.0014 4.7E-08 35.8 3.2 21 14-34 4-24 (173)
351 2it1_A 362AA long hypothetical 96.7 0.0012 4E-08 41.2 3.2 21 14-34 31-51 (362)
352 2yyz_A Sugar ABC transporter, 96.7 0.0011 3.9E-08 41.2 3.1 21 14-34 31-51 (359)
353 2fna_A Conserved hypothetical 96.7 0.0013 4.5E-08 39.4 3.4 21 14-34 32-52 (357)
354 3q5d_A Atlastin-1; G protein, 96.7 0.0026 9E-08 40.7 4.8 26 9-34 64-89 (447)
355 1g29_1 MALK, maltose transport 96.7 0.0012 4.1E-08 41.3 3.1 21 14-34 31-51 (372)
356 1gtv_A TMK, thymidylate kinase 96.7 0.00044 1.5E-08 39.1 1.1 21 14-34 2-22 (214)
357 1ofh_A ATP-dependent HSL prote 96.7 0.0014 4.7E-08 38.8 3.3 23 12-34 50-72 (310)
358 3n70_A Transport activator; si 96.7 0.0015 5.1E-08 35.2 3.2 24 12-35 24-47 (145)
359 3b9p_A CG5977-PA, isoform A; A 96.7 0.0013 4.3E-08 39.1 3.1 23 12-34 54-76 (297)
360 2dr3_A UPF0273 protein PH0284; 96.7 0.0015 5.1E-08 37.5 3.3 21 14-34 25-45 (247)
361 1v43_A Sugar-binding transport 96.7 0.0013 4.4E-08 41.2 3.2 21 14-34 39-59 (372)
362 2xtz_A Guanine nucleotide-bind 96.7 0.0019 6.5E-08 40.1 3.9 25 8-32 5-29 (354)
363 3e70_C DPA, signal recognition 96.7 0.0014 4.7E-08 40.3 3.3 24 11-34 128-151 (328)
364 2vli_A Antibiotic resistance p 96.7 0.00083 2.9E-08 37.0 2.2 22 13-34 6-27 (183)
365 2bbs_A Cystic fibrosis transme 96.7 0.0014 4.8E-08 39.6 3.3 22 13-34 65-86 (290)
366 1uj2_A Uridine-cytidine kinase 96.7 0.0018 6E-08 37.9 3.6 24 11-34 21-44 (252)
367 2iyv_A Shikimate kinase, SK; t 96.7 0.0016 5.3E-08 36.1 3.2 21 14-34 4-24 (184)
368 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0015 5.1E-08 38.5 3.3 22 13-34 5-26 (260)
369 3kta_A Chromosome segregation 96.7 0.0016 5.6E-08 35.9 3.3 20 14-33 28-47 (182)
370 3gd7_A Fusion complex of cysti 96.7 0.0014 4.8E-08 41.2 3.3 22 13-34 48-69 (390)
371 1l8q_A Chromosomal replication 96.7 0.0014 4.7E-08 39.5 3.2 22 13-34 38-59 (324)
372 4fid_A G protein alpha subunit 96.7 0.0017 5.9E-08 40.2 3.6 27 41-70 145-171 (340)
373 2kjq_A DNAA-related protein; s 96.7 0.00076 2.6E-08 36.9 1.8 22 13-34 37-58 (149)
374 4e22_A Cytidylate kinase; P-lo 96.7 0.0017 5.8E-08 38.1 3.4 22 12-33 27-48 (252)
375 3tqc_A Pantothenate kinase; bi 96.7 0.0022 7.7E-08 39.3 4.0 23 11-33 91-113 (321)
376 1yrb_A ATP(GTP)binding protein 96.7 0.0022 7.6E-08 37.2 3.8 24 10-33 12-35 (262)
377 1sq5_A Pantothenate kinase; P- 96.6 0.0024 8.4E-08 38.5 4.0 24 11-34 79-102 (308)
378 3tui_C Methionine import ATP-b 96.6 0.0016 5.4E-08 40.8 3.2 21 14-34 56-76 (366)
379 1d2n_A N-ethylmaleimide-sensit 96.6 0.0026 9E-08 37.4 4.0 25 10-34 62-86 (272)
380 1xjc_A MOBB protein homolog; s 96.6 0.0019 6.5E-08 36.3 3.3 22 13-34 5-26 (169)
381 3b9q_A Chloroplast SRP recepto 96.6 0.0029 9.9E-08 38.4 4.3 23 12-34 100-122 (302)
382 2pez_A Bifunctional 3'-phospho 96.6 0.0024 8.4E-08 35.2 3.7 23 12-34 5-27 (179)
383 1t9h_A YLOQ, probable GTPase E 96.6 0.00042 1.4E-08 42.3 0.4 23 13-35 174-196 (307)
384 3uk6_A RUVB-like 2; hexameric 96.6 0.0019 6.5E-08 39.3 3.4 22 13-34 71-92 (368)
385 2p5t_B PEZT; postsegregational 96.6 0.0013 4.5E-08 38.5 2.5 24 11-34 31-54 (253)
386 1fnn_A CDC6P, cell division co 96.6 0.0019 6.4E-08 39.3 3.3 22 14-35 46-67 (389)
387 3nh6_A ATP-binding cassette SU 96.6 0.00093 3.2E-08 40.7 1.9 22 13-34 81-102 (306)
388 3umf_A Adenylate kinase; rossm 96.6 0.002 7E-08 37.5 3.2 20 15-34 32-51 (217)
389 1nlf_A Regulatory protein REPA 96.6 0.0021 7.2E-08 38.1 3.3 21 14-34 32-52 (279)
390 3d31_A Sulfate/molybdate ABC t 96.5 0.0011 3.6E-08 41.2 2.0 21 14-34 28-48 (348)
391 2gza_A Type IV secretion syste 96.5 0.002 6.7E-08 39.9 3.2 22 13-34 176-197 (361)
392 2p67_A LAO/AO transport system 96.5 0.0032 1.1E-07 38.6 4.1 24 10-33 54-77 (341)
393 1cip_A Protein (guanine nucleo 96.5 0.0024 8.2E-08 39.6 3.5 24 9-32 29-52 (353)
394 3cf0_A Transitional endoplasmi 96.5 0.002 7E-08 38.6 3.2 22 13-34 50-71 (301)
395 3ohm_A Guanine nucleotide-bind 96.5 0.0026 8.9E-08 39.2 3.6 25 9-33 4-28 (327)
396 3jvv_A Twitching mobility prot 96.5 0.002 7E-08 40.0 3.2 21 14-34 125-145 (356)
397 1m7g_A Adenylylsulfate kinase; 96.5 0.0023 8E-08 36.4 3.2 23 12-34 25-47 (211)
398 3nwj_A ATSK2; P loop, shikimat 96.5 0.0021 7.3E-08 38.1 3.1 23 12-34 48-70 (250)
399 1vht_A Dephospho-COA kinase; s 96.5 0.0031 1.1E-07 35.8 3.8 22 13-34 5-26 (218)
400 1ltq_A Polynucleotide kinase; 96.5 0.0023 7.8E-08 38.0 3.3 22 13-34 3-24 (301)
401 2obl_A ESCN; ATPase, hydrolase 96.5 0.0026 9E-08 39.3 3.6 24 12-35 71-94 (347)
402 4fcw_A Chaperone protein CLPB; 96.5 0.0031 1.1E-07 37.4 3.8 22 13-34 48-69 (311)
403 3pfi_A Holliday junction ATP-d 96.5 0.0022 7.6E-08 38.6 3.2 22 13-34 56-77 (338)
404 2f6r_A COA synthase, bifunctio 96.5 0.0031 1E-07 37.7 3.8 23 11-33 74-96 (281)
405 2v1u_A Cell division control p 96.5 0.0018 6E-08 39.3 2.8 23 12-34 44-66 (387)
406 2qby_B CDC6 homolog 3, cell di 96.5 0.0025 8.5E-08 38.8 3.4 22 13-34 46-67 (384)
407 2ewv_A Twitching motility prot 96.5 0.0022 7.5E-08 39.9 3.2 22 13-34 137-158 (372)
408 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0023 7.9E-08 41.0 3.3 23 12-34 138-160 (460)
409 2og2_A Putative signal recogni 96.5 0.0024 8.2E-08 39.8 3.2 23 12-34 157-179 (359)
410 2dpy_A FLII, flagellum-specifi 96.5 0.0028 9.6E-08 40.3 3.6 24 12-35 157-180 (438)
411 1sxj_C Activator 1 40 kDa subu 96.4 0.0024 8.3E-08 38.7 3.2 21 15-35 49-69 (340)
412 4eaq_A DTMP kinase, thymidylat 96.4 0.004 1.4E-07 36.2 4.0 24 11-34 25-48 (229)
413 1zuh_A Shikimate kinase; alpha 96.4 0.0033 1.1E-07 34.3 3.4 22 13-34 8-29 (168)
414 2xtz_A Guanine nucleotide-bind 96.4 0.00023 8E-09 44.1 -1.4 34 37-70 146-193 (354)
415 3szr_A Interferon-induced GTP- 96.4 0.0014 4.9E-08 43.1 2.1 25 14-38 47-71 (608)
416 1sxj_D Activator 1 41 kDa subu 96.4 0.0027 9.1E-08 38.2 3.2 20 15-34 61-80 (353)
417 1sxj_E Activator 1 40 kDa subu 96.4 0.002 7E-08 38.9 2.7 20 15-34 39-58 (354)
418 2bjv_A PSP operon transcriptio 96.4 0.0028 9.7E-08 37.0 3.2 24 13-36 30-53 (265)
419 3r20_A Cytidylate kinase; stru 96.4 0.0033 1.1E-07 37.0 3.5 22 12-33 9-30 (233)
420 1um8_A ATP-dependent CLP prote 96.4 0.0028 9.5E-08 39.0 3.3 23 12-34 72-94 (376)
421 3eie_A Vacuolar protein sortin 96.4 0.0027 9.2E-08 38.4 3.1 23 12-34 51-73 (322)
422 2yhs_A FTSY, cell division pro 96.4 0.004 1.4E-07 40.5 4.0 22 12-33 293-314 (503)
423 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0028 9.4E-08 38.5 3.1 22 13-34 46-67 (322)
424 1oxx_K GLCV, glucose, ABC tran 96.4 0.0011 3.6E-08 41.2 1.2 21 14-34 33-53 (353)
425 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0025 8.7E-08 39.0 2.9 22 13-34 172-193 (330)
426 1azs_C GS-alpha; complex (lyas 96.4 0.004 1.4E-07 39.4 3.8 25 9-33 37-61 (402)
427 2zts_A Putative uncharacterize 96.3 0.0034 1.2E-07 36.0 3.2 21 14-34 32-52 (251)
428 3pxg_A Negative regulator of g 96.3 0.0026 8.9E-08 40.5 2.9 24 12-35 201-224 (468)
429 2qmh_A HPR kinase/phosphorylas 96.3 0.0029 9.9E-08 36.8 2.8 23 13-35 35-57 (205)
430 3zvl_A Bifunctional polynucleo 96.3 0.0031 1.1E-07 39.7 3.0 23 12-34 258-280 (416)
431 3hws_A ATP-dependent CLP prote 96.3 0.0037 1.3E-07 38.3 3.3 23 12-34 51-73 (363)
432 1nij_A Hypothetical protein YJ 96.3 0.0027 9.1E-08 38.6 2.5 22 14-35 6-27 (318)
433 1pzn_A RAD51, DNA repair and r 96.3 0.0038 1.3E-07 38.5 3.3 23 13-35 132-154 (349)
434 3b60_A Lipid A export ATP-bind 96.2 0.0038 1.3E-07 40.8 3.3 22 13-34 370-391 (582)
435 3a8t_A Adenylate isopentenyltr 96.2 0.004 1.4E-07 38.6 3.3 22 13-34 41-62 (339)
436 3d8b_A Fidgetin-like protein 1 96.2 0.0038 1.3E-07 38.4 3.2 23 12-34 117-139 (357)
437 2qp9_X Vacuolar protein sortin 96.2 0.0038 1.3E-07 38.4 3.2 22 13-34 85-106 (355)
438 3crm_A TRNA delta(2)-isopenten 96.2 0.0053 1.8E-07 37.8 3.8 22 13-34 6-27 (323)
439 2qgz_A Helicase loader, putati 96.2 0.0045 1.5E-07 37.5 3.4 23 12-34 152-174 (308)
440 2r8r_A Sensor protein; KDPD, P 96.2 0.0059 2E-07 36.0 3.8 24 10-33 4-27 (228)
441 2r62_A Cell division protease 96.2 0.0013 4.4E-08 38.5 1.0 21 14-34 46-66 (268)
442 3exa_A TRNA delta(2)-isopenten 96.2 0.0045 1.5E-07 38.2 3.4 22 14-35 5-26 (322)
443 3co5_A Putative two-component 96.2 0.0017 5.8E-08 35.0 1.4 22 13-34 28-49 (143)
444 1q3t_A Cytidylate kinase; nucl 96.2 0.0054 1.8E-07 35.4 3.6 24 11-34 15-38 (236)
445 2px0_A Flagellar biosynthesis 96.2 0.0044 1.5E-07 37.5 3.3 22 12-33 105-126 (296)
446 3lda_A DNA repair protein RAD5 96.2 0.0042 1.4E-07 39.1 3.3 20 14-33 180-199 (400)
447 1hqc_A RUVB; extended AAA-ATPa 96.2 0.0022 7.6E-08 38.3 1.9 22 13-34 39-60 (324)
448 1p9r_A General secretion pathw 96.2 0.0042 1.4E-07 39.4 3.2 22 13-34 168-189 (418)
449 3tqf_A HPR(Ser) kinase; transf 96.2 0.0064 2.2E-07 34.7 3.6 23 13-35 17-39 (181)
450 1jr3_A DNA polymerase III subu 96.2 0.0045 1.5E-07 37.5 3.2 21 14-34 40-60 (373)
451 1tf7_A KAIC; homohexamer, hexa 96.2 0.0043 1.5E-07 40.0 3.3 19 14-32 41-59 (525)
452 3pvs_A Replication-associated 96.2 0.0043 1.5E-07 39.5 3.2 22 13-34 51-72 (447)
453 2r44_A Uncharacterized protein 96.1 0.0025 8.7E-08 38.4 2.1 22 13-34 47-68 (331)
454 3vfd_A Spastin; ATPase, microt 96.1 0.0044 1.5E-07 38.4 3.1 23 12-34 148-170 (389)
455 2z4s_A Chromosomal replication 96.1 0.0044 1.5E-07 39.2 3.2 22 13-34 131-152 (440)
456 3m6a_A ATP-dependent protease 96.1 0.0042 1.4E-07 40.4 3.1 22 13-34 109-130 (543)
457 1svm_A Large T antigen; AAA+ f 96.1 0.0048 1.6E-07 38.6 3.2 24 11-34 168-191 (377)
458 1vma_A Cell division protein F 96.1 0.0051 1.8E-07 37.4 3.3 21 13-33 105-125 (306)
459 3d3q_A TRNA delta(2)-isopenten 96.1 0.005 1.7E-07 38.2 3.2 22 13-34 8-29 (340)
460 2oap_1 GSPE-2, type II secreti 96.1 0.005 1.7E-07 39.9 3.3 22 13-34 261-282 (511)
461 1iqp_A RFCS; clamp loader, ext 96.1 0.0052 1.8E-07 36.5 3.2 22 14-35 48-69 (327)
462 3euj_A Chromosome partition pr 96.1 0.005 1.7E-07 39.8 3.3 21 13-33 30-50 (483)
463 3ake_A Cytidylate kinase; CMP 96.1 0.0058 2E-07 34.2 3.2 21 14-34 4-24 (208)
464 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0075 2.6E-07 39.2 4.1 23 13-35 48-70 (538)
465 4b4t_K 26S protease regulatory 96.1 0.005 1.7E-07 39.2 3.2 22 13-34 207-228 (428)
466 1c9k_A COBU, adenosylcobinamid 96.0 0.0065 2.2E-07 34.5 3.3 21 15-35 2-22 (180)
467 2chq_A Replication factor C sm 96.0 0.0056 1.9E-07 36.2 3.1 22 14-35 40-61 (319)
468 1sxj_B Activator 1 37 kDa subu 96.0 0.0059 2E-07 36.2 3.2 21 15-35 45-65 (323)
469 2grj_A Dephospho-COA kinase; T 96.0 0.0092 3.1E-07 33.9 3.9 26 10-35 10-35 (192)
470 1g8p_A Magnesium-chelatase 38 96.0 0.0022 7.7E-08 38.6 1.4 21 14-34 47-67 (350)
471 4fn5_A EF-G 1, elongation fact 96.0 0.027 9.1E-07 37.7 6.5 23 11-33 12-34 (709)
472 1sxj_A Activator 1 95 kDa subu 96.0 0.0057 1.9E-07 39.4 3.2 22 13-34 78-99 (516)
473 3b5x_A Lipid A export ATP-bind 96.0 0.0074 2.5E-07 39.4 3.7 23 12-34 369-391 (582)
474 2j37_W Signal recognition part 96.0 0.0078 2.7E-07 39.1 3.7 23 11-33 100-122 (504)
475 3foz_A TRNA delta(2)-isopenten 95.9 0.0092 3.2E-07 36.7 3.9 22 13-34 11-32 (316)
476 1z6t_A APAF-1, apoptotic prote 95.9 0.006 2.1E-07 39.3 3.2 22 13-34 148-169 (591)
477 2zan_A Vacuolar protein sortin 95.9 0.0063 2.2E-07 38.5 3.2 23 13-35 168-190 (444)
478 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.0068 2.3E-07 33.0 2.9 19 15-33 26-44 (149)
479 4b4t_M 26S protease regulatory 95.9 0.0068 2.3E-07 38.7 3.2 23 12-34 215-237 (434)
480 1ko7_A HPR kinase/phosphatase; 95.9 0.0083 2.8E-07 36.8 3.5 23 13-35 145-167 (314)
481 1w5s_A Origin recognition comp 95.9 0.0041 1.4E-07 38.1 2.1 21 14-34 52-74 (412)
482 1azs_C GS-alpha; complex (lyas 95.9 0.02 6.7E-07 36.2 5.2 24 44-70 204-227 (402)
483 4b4t_L 26S protease subunit RP 95.9 0.0071 2.4E-07 38.6 3.2 23 12-34 215-237 (437)
484 3bh0_A DNAB-like replicative h 95.8 0.0075 2.6E-07 36.5 3.2 21 14-34 70-90 (315)
485 1tf7_A KAIC; homohexamer, hexa 95.8 0.0083 2.8E-07 38.7 3.4 22 14-35 283-304 (525)
486 1r6b_X CLPA protein; AAA+, N-t 95.8 0.0083 2.8E-07 40.1 3.5 24 11-34 206-229 (758)
487 2ce7_A Cell division protein F 95.8 0.0079 2.7E-07 38.7 3.3 21 14-34 51-71 (476)
488 1tue_A Replication protein E1; 95.8 0.0061 2.1E-07 35.6 2.5 22 12-33 58-79 (212)
489 2a5y_B CED-4; apoptosis; HET: 95.8 0.011 3.9E-07 38.1 4.0 22 13-34 153-174 (549)
490 2yl4_A ATP-binding cassette SU 95.8 0.0041 1.4E-07 40.7 2.0 22 13-34 371-392 (595)
491 1ojl_A Transcriptional regulat 95.8 0.0083 2.8E-07 36.2 3.2 23 12-34 25-47 (304)
492 3pxi_A Negative regulator of g 95.8 0.0063 2.1E-07 40.7 2.9 25 11-35 200-224 (758)
493 3qf4_B Uncharacterized ABC tra 95.8 0.0048 1.6E-07 40.5 2.3 23 12-34 381-403 (598)
494 2ga8_A Hypothetical 39.9 kDa p 95.8 0.012 4.2E-07 36.8 4.0 23 11-33 23-45 (359)
495 3hr8_A Protein RECA; alpha and 95.8 0.0086 2.9E-07 37.3 3.3 21 14-34 63-83 (356)
496 3j16_B RLI1P; ribosome recycli 95.8 0.011 3.7E-07 39.2 3.9 22 13-34 104-125 (608)
497 3eph_A TRNA isopentenyltransfe 95.8 0.0089 3.1E-07 38.0 3.3 21 14-34 4-24 (409)
498 2dhr_A FTSH; AAA+ protein, hex 95.7 0.008 2.7E-07 38.9 3.2 21 14-34 66-86 (499)
499 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.0068 2.3E-07 39.2 2.8 22 13-34 42-63 (500)
500 3k1j_A LON protease, ATP-depen 95.7 0.0085 2.9E-07 39.3 3.3 23 13-35 61-83 (604)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.86 E-value=1e-21 Score=114.72 Aligned_cols=62 Identities=29% Similarity=0.408 Sum_probs=45.6
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
+...+||+++|+++||||||+.||+.+.|...|.||++.+|..+....++ .+.++||||||+
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGq 72 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGL 72 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCT
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCc
Confidence 44679999999999999999999999999999999999999888887765 899999999995
No 2
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.73 E-value=1.5e-17 Score=92.81 Aligned_cols=62 Identities=24% Similarity=0.355 Sum_probs=51.8
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
|+....+|++++|+++||||||+.++..+.|.. +.||++..+. +.+..++ .+.+++|||+|.
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~ 64 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYK-KEMLVDGQTHLVLIREEAGA 64 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEE-EEEEETTEEEEEEEEECSSS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEE-EEEEECCEEEEEEEEECCCC
Confidence 344567999999999999999999999999986 8899997664 4455554 789999999995
No 3
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=8.1e-17 Score=92.51 Aligned_cols=64 Identities=25% Similarity=0.366 Sum_probs=56.8
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
...+..+||+++|+++||||||++++..+.|...+.||++.++....+..++ .+.+++|||+|.
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 3456679999999999999999999999999988999999999888887776 689999999984
No 4
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.72 E-value=4.7e-17 Score=92.12 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=51.5
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.++...+||+++|+++||||||+.++..+.|...+.||++.++.......+..+.+++|||+|.
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 79 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADL 79 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCC
Confidence 3456679999999999999999999999999999999999887544333344789999999985
No 5
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.71 E-value=1e-16 Score=91.86 Aligned_cols=64 Identities=28% Similarity=0.244 Sum_probs=53.8
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
|.....+|++++|++++|||||+.++..+.|...+.||++..+.......+..+.+++|||+|.
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 67 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ 67 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCC
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCc
Confidence 4456779999999999999999999999999999999999877544333345799999999985
No 6
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.70 E-value=1.7e-16 Score=88.19 Aligned_cols=64 Identities=28% Similarity=0.375 Sum_probs=55.2
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.++...+||+++|++++|||||+.++..+.+...+.|+++.++....+..++ .+.+.+|||+|.
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 73 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 73 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCc
Confidence 3445679999999999999999999999999999999999998888887776 689999999984
No 7
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=89.38 Aligned_cols=67 Identities=25% Similarity=0.325 Sum_probs=56.7
Q ss_pred cccccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 4 LWVLRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 4 ~~~~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
....+....+||+++|++++|||||+.++..+.+...+.++++.++.......++ .+.+.+|||+|.
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 84 (193)
T 2oil_A 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84 (193)
T ss_dssp ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCC
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCc
Confidence 3334556789999999999999999999999999988999999998877777665 789999999984
No 8
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=90.98 Aligned_cols=64 Identities=28% Similarity=0.397 Sum_probs=46.7
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
...+..+||+++|+++||||||+.++..+.|...+.||++.++....+..++ .+.+++|||+|.
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTC
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc
Confidence 4456679999999999999999999999999888999999999888777776 689999999985
No 9
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.69 E-value=1.2e-16 Score=92.31 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=51.1
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.....+||+++|+++||||||+.++..+.|...|.||++.++.......+..+.++||||+|.
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 85 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGS 85 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCS
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCC
Confidence 345679999999999999999999999999999999999888654444455899999999984
No 10
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.69 E-value=1.2e-16 Score=92.01 Aligned_cols=63 Identities=17% Similarity=0.304 Sum_probs=51.6
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeC-CEEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR-GTFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~ 70 (71)
......+||+++|+++||||||++++..+.|...|.||++.++... +..+ ..+.+++|||+|.
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~ 86 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTSGS 86 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EESSSSEEEEEEEEECCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEE-EEECCEEEEEEEEeCCCc
Confidence 3456789999999999999999999999999999999999887543 4444 4899999999984
No 11
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.69 E-value=1.9e-16 Score=89.17 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=51.8
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
+...+|++++|+++||||||++++..+.|...|.||++.++.......+..+.+.+|||+|.
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 65 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 65 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCC
Confidence 45679999999999999999999999999988999999887544333345899999999985
No 12
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.69 E-value=3.9e-16 Score=89.07 Aligned_cols=62 Identities=31% Similarity=0.432 Sum_probs=56.0
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+..+||+++|++++|||||+.++..+.+...+.|+++.++....+..++ .+.+.+|||+|.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCCh
Confidence 45679999999999999999999999999999999999999888777776 689999999984
No 13
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.69 E-value=3.3e-16 Score=86.52 Aligned_cols=62 Identities=27% Similarity=0.427 Sum_probs=54.8
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+..+|++++|++++|||||++++..+.+...+.|+++.++....+..++ .+.+.+|||+|.
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 65 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCc
Confidence 35679999999999999999999999999988999999998877776664 889999999984
No 14
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.69 E-value=4.3e-16 Score=87.29 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=56.5
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+.+..+||+++|++++|||||+.++..+.+...+.|+++.++....+..++ .+.+++|||+|.
T Consensus 5 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 69 (186)
T 2bme_A 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69 (186)
T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc
Confidence 3446789999999999999999999999999988999999988888777776 679999999984
No 15
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.68 E-value=3.3e-16 Score=87.11 Aligned_cols=62 Identities=29% Similarity=0.376 Sum_probs=53.5
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+...+|++++|++++|||||++++..+.+...+.+|++.++. .....++ .+.+++|||+|.
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~ 67 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQ 67 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCc
Confidence 4456799999999999999999999999999999999998877 4455555 689999999984
No 16
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.68 E-value=2.9e-16 Score=87.82 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=53.2
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.....+||+++|++++|||||++++..+.+...+.||++..+ ......++ .+.+++|||+|.
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~ 64 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQ 64 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCC
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCc
Confidence 345679999999999999999999999999999999999888 44555554 789999999984
No 17
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.68 E-value=9.3e-17 Score=89.41 Aligned_cols=62 Identities=27% Similarity=0.407 Sum_probs=55.0
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC--EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG--TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~--~~~l~i~Dt~G~ 70 (71)
....+|++++|++++|||||+.++..+.|...+.||++.++....+..++ .+.+++|||+|.
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 66 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC
Confidence 34579999999999999999999999999888899999888888777765 689999999985
No 18
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.68 E-value=2.4e-16 Score=89.25 Aligned_cols=63 Identities=27% Similarity=0.456 Sum_probs=53.3
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
+....+|++++|+++||||||++++..+.+...+.||++.++.......+..+.+++|||+|.
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 81 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCc
Confidence 345679999999999999999999999999999999999888765444445889999999984
No 19
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.68 E-value=3.1e-16 Score=88.70 Aligned_cols=62 Identities=23% Similarity=0.263 Sum_probs=51.2
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
..+...+||+++|+++||||||+.+++.+.|...+.||. .++. +.+..++ .+.+++|||+|.
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~-~~~~~~~~~~~l~i~Dt~G~ 77 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFK-KEIVVDGQSYLLLIRDEGGP 77 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEE-EEEEETTEEEEEEEEECSSS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEE-EEEEECCEEEEEEEEECCCC
Confidence 345668999999999999999999999999998888884 4565 5555555 789999999995
No 20
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.68 E-value=4.6e-16 Score=85.66 Aligned_cols=61 Identities=51% Similarity=0.701 Sum_probs=54.7
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
+..+|++++|++++|||||+.++..+.+...+.||++.++....+..++ .+.+.+|||+|.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 64 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTG
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCc
Confidence 4579999999999999999999999999989999999999888887776 789999999984
No 21
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.68 E-value=3.8e-16 Score=87.46 Aligned_cols=63 Identities=25% Similarity=0.292 Sum_probs=53.2
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
......+||+++|++++|||||++++..+.+...+.|+++..+. .....++ .+.+++|||+|.
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~ 76 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQ 76 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCSC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeE-EEEEeCCcEEEEEEEECCCc
Confidence 34556899999999999999999999999999999999998884 4444444 788999999984
No 22
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.67 E-value=4e-16 Score=86.77 Aligned_cols=64 Identities=28% Similarity=0.377 Sum_probs=53.4
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
...+..+||+++|++++|||||++++..+.+...+.|+++.++....+..++ .+.+.+|||+|.
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 68 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTG
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCc
Confidence 3456789999999999999999999999999988999999999888887776 689999999983
No 23
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=89.48 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=44.6
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+.+..+||+++|+++||||||+.++..+.+...+.|+++.++....+..++ .+.+++|||+|.
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTH
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCc
Confidence 3456789999999999999999999999999888999999988888777776 689999999983
No 24
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.67 E-value=4.7e-16 Score=87.62 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=45.7
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG 58 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~ 58 (71)
|..+..+||+++|++++|||||+.+++.+.+...+.||++.++....+..++
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~ 53 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLND 53 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecC
Confidence 3456679999999999999999999999999999999999998887776654
No 25
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.67 E-value=7.6e-17 Score=90.32 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=37.8
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+..+||+++|++++|||||+.++..+.|...+.||++.++....+..++ .+.+++|||+|.
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCC
Confidence 45679999999999999999999999999888999999999887777766 689999999984
No 26
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.67 E-value=7.7e-16 Score=86.85 Aligned_cols=64 Identities=27% Similarity=0.382 Sum_probs=57.1
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
...+..+||+++|++++|||||++++..+.+...+.|+++.++....+..++ .+.+.+|||+|.
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 75 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 3445679999999999999999999999999999999999999888887776 689999999984
No 27
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.67 E-value=7e-16 Score=85.75 Aligned_cols=62 Identities=32% Similarity=0.406 Sum_probs=51.8
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
....+||+++|++++|||||++++..+.+...+.|+++.++....+..++ .+.+.+|||+|.
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 45679999999999999999999999999988999999998877777776 689999999984
No 28
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=4.3e-16 Score=88.11 Aligned_cols=62 Identities=24% Similarity=0.405 Sum_probs=52.6
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeC-CEEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR-GTFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~ 70 (71)
.+...+||+++|+++||||||+.++..+.|...+.||++..+... +..+ ..+.+++|||+|.
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~D~~G~ 76 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS-VTVGGKQYLLGLYDTAGQ 76 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEE-EESSSCEEEEEEECCCCS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEE-EEECCEEEEEEEEECCCC
Confidence 345679999999999999999999999999999999999877543 4444 4799999999985
No 29
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.67 E-value=7e-16 Score=84.95 Aligned_cols=62 Identities=27% Similarity=0.343 Sum_probs=55.3
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
+...+|++++|++++|||||+.++..+.+...+.++++.++.......++ .+.+++|||+|.
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 65 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc
Confidence 35679999999999999999999999999988999999988877777765 789999999984
No 30
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.67 E-value=4.9e-16 Score=88.39 Aligned_cols=63 Identities=29% Similarity=0.448 Sum_probs=54.6
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
+....+||+++|++++|||||+.++..+.+...+.++++.++....+..++ .+.+.+|||+|.
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 456779999999999999999999999999989999999998887777665 789999999984
No 31
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.67 E-value=8.2e-16 Score=86.96 Aligned_cols=64 Identities=27% Similarity=0.320 Sum_probs=52.1
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
......+||+++|++++|||||+.++..+.+...+.++++.++....+..++ .+.+++|||+|.
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 80 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc
Confidence 3456789999999999999999999999999888899999998888787776 689999999984
No 32
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=5.3e-16 Score=88.03 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=51.4
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
+...+||+++|+++||||||+.++..+.|...+.||++.++.......+..+.+++|||+|.
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 86 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ 86 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCC
Confidence 45679999999999999999999999999999999999877544333344789999999984
No 33
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.66 E-value=1.1e-15 Score=84.86 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=56.1
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+.+..+|++++|++++|||||++++..+.+...+.++.+.++....+..++ .+.+.+|||+|.
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 74 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC
Confidence 3456689999999999999999999999999988999999988887777766 789999999984
No 34
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.66 E-value=7.7e-16 Score=86.05 Aligned_cols=61 Identities=25% Similarity=0.280 Sum_probs=51.7
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+|++++|++++|||||+.++..+.|...+.||++..+.......+..+.+++|||+|.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 63 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCC
Confidence 3569999999999999999999999999999999998777544443344889999999985
No 35
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.66 E-value=9.7e-16 Score=86.44 Aligned_cols=61 Identities=26% Similarity=0.416 Sum_probs=54.7
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
...+||+++|++++|||||+.++..+.+...+.++++.++....+..++ .+.+.+|||+|.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc
Confidence 4569999999999999999999999999988999999998888887776 689999999984
No 36
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=90.24 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=42.7
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+||+++|+++||||||+.++..+.|...+.||++..+.......+..+.+++|||+|.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~ 92 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCc
Confidence 4569999999999999999999999999888999998777544433344789999999984
No 37
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=9.1e-16 Score=86.39 Aligned_cols=62 Identities=27% Similarity=0.362 Sum_probs=55.4
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
....+||+++|++++|||||+.++..+.|...+.|+++.++....+..++ .+.+.+|||+|.
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 74 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCc
Confidence 34579999999999999999999999999989999999998887777765 789999999984
No 38
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.2e-16 Score=89.23 Aligned_cols=64 Identities=27% Similarity=0.417 Sum_probs=50.5
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
+..+..+||+++|+++||||||+.++..+.|...+.||++.++....+..++ .+.+++|||+|.
T Consensus 8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 72 (223)
T 3cpj_B 8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72 (223)
T ss_dssp --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTT
T ss_pred CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc
Confidence 3456789999999999999999999999999988999999999888777776 689999999984
No 39
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=1.2e-15 Score=84.02 Aligned_cols=60 Identities=27% Similarity=0.355 Sum_probs=53.7
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
..+|++++|++++|||||+.++..+.+...+.|+++.++.......++ .+.+.+|||+|.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 62 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCC
Confidence 358999999999999999999999999988999999988877777765 789999999984
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.66 E-value=1.4e-15 Score=86.50 Aligned_cols=62 Identities=26% Similarity=0.410 Sum_probs=55.4
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+..+||+++|++++|||||+.++..+.|...+.|+++.++....+..++ .+.+++|||+|.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL 67 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCc
Confidence 35679999999999999999999999999888999999988877777765 789999999984
No 41
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.65 E-value=1.6e-15 Score=84.59 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=55.1
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
++...+|++++|++++|||||+.++..+.+...+.++++.++....+..++ .+.+++|||+|.
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 71 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCS
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCC
Confidence 345679999999999999999999999999988899999988887777765 789999999984
No 42
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.65 E-value=8.5e-16 Score=84.73 Aligned_cols=60 Identities=22% Similarity=0.402 Sum_probs=47.3
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
..+|++++|++++|||||+.++..+.+...+.|+++.++....+..++ .+.+.+|||+|.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 62 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTG
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCC
Confidence 468999999999999999999999999888999999988877777665 789999999984
No 43
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.65 E-value=2e-15 Score=85.18 Aligned_cols=62 Identities=24% Similarity=0.435 Sum_probs=55.2
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+..+||+++|++++|||||+.++..+.|...+.++++.++....+..++ .+.+.+|||+|.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 81 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSC
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCc
Confidence 45679999999999999999999999999888999999988877777665 789999999984
No 44
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.65 E-value=1.6e-15 Score=83.57 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=54.6
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
...+|++++|++++|||||++++..+.+...+.|+.+.++.......++ .+.+.+|||+|.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 65 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCc
Confidence 4569999999999999999999999999988999999988877777765 789999999984
No 45
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.65 E-value=6.7e-16 Score=87.89 Aligned_cols=64 Identities=28% Similarity=0.448 Sum_probs=44.6
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
......+||+++|++++|||||+.++..+.|...+.++++.++....+..++ .+.+++|||+|.
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 87 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTC
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCC
Confidence 3455679999999999999999999999999888999999988877777766 688999999984
No 46
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.65 E-value=5e-16 Score=88.23 Aligned_cols=62 Identities=26% Similarity=0.341 Sum_probs=43.0
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.....+||+++|+++||||||+.++..+.|...+.||++..+... +..++ .+.+++|||+|.
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~ 78 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAV-VSVDGRPVRLQLCDTAGQ 78 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEE-EEETTEEEEEEEEECCCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEE-EEECCEEEEEEEEECCCC
Confidence 345679999999999999999999999999989999999777544 44444 789999999985
No 47
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.5e-15 Score=86.04 Aligned_cols=62 Identities=24% Similarity=0.307 Sum_probs=54.6
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeC-CEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR-GTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~ 70 (71)
....+||+++|++++|||||+.++..+.|...+.|+++.++....+..+ ..+.+.+|||+|.
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 82 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ 82 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCS
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCc
Confidence 3567999999999999999999999999988899999998887777665 4889999999984
No 48
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.65 E-value=8.2e-16 Score=84.58 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=50.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.+|++++|++++|||||++++..+.+...+.||++..+.......+..+.+++|||+|.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~ 61 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCCh
Confidence 58999999999999999999999999989999999877644333345899999999984
No 49
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=6.3e-16 Score=88.11 Aligned_cols=64 Identities=27% Similarity=0.392 Sum_probs=49.9
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
+.....+||+++|+++||||||++++..+.+...+.||++..+.......+..+.+.+|||+|.
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 82 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQ 82 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCc
Confidence 4456689999999999999999999999999999999999887443333345789999999984
No 50
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.65 E-value=5.6e-16 Score=86.25 Aligned_cols=63 Identities=29% Similarity=0.422 Sum_probs=49.6
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeC-C-EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR-G-TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~-~~~l~i~Dt~G~ 70 (71)
+....+||+++|++++|||||+.++..+.+...+.|+++.++....+..+ + .+.+.+|||+|.
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence 45567999999999999999999999999998999999988887777665 3 688999999984
No 51
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.65 E-value=1.1e-15 Score=87.15 Aligned_cols=62 Identities=23% Similarity=0.296 Sum_probs=52.8
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
....+||+++|++++|||||+.++..+.+...+.||++.++.......+..+.+.+|||+|.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 83 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQ 83 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCc
Confidence 45679999999999999999999999999999999999888755433334789999999984
No 52
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.65 E-value=9.4e-16 Score=86.96 Aligned_cols=63 Identities=30% Similarity=0.468 Sum_probs=49.0
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
..+..+||+++|++++|||||+.++..+.+...+.|+++.++....+..++ .+.+.+|||+|.
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCc
Confidence 345679999999999999999999999999888999999999888887776 789999999984
No 53
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.64 E-value=2.7e-15 Score=85.22 Aligned_cols=62 Identities=31% Similarity=0.428 Sum_probs=55.3
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+..++++++|++|||||||++++....+...+.||++.++....+..++ .+.+++|||+|.
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~ 88 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCC
Confidence 34579999999999999999999999999988999999999888887776 678999999884
No 54
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.64 E-value=5.9e-16 Score=88.33 Aligned_cols=64 Identities=13% Similarity=-0.046 Sum_probs=49.0
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+....+||+++|+++||||||+.++....+...+.|+++.++....+..++ .+.+.+|||+|.
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~ 82 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCC
Confidence 3455679999999999999999999975555444567777777777666665 789999999985
No 55
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=85.90 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=52.2
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
++...+||+++|++++|||||+.++..+.+...+.+|++..+.......+..+.+.+|||+|.
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 72 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCT
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCCh
Confidence 345679999999999999999999999999999999999877544433344789999999984
No 56
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.64 E-value=1e-16 Score=89.50 Aligned_cols=64 Identities=30% Similarity=0.304 Sum_probs=37.4
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
+.....+|++++|++++|||||+.++..+.|...+.||++..+.......+..+.+++|||+|.
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 66 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCC
Confidence 3445679999999999999999999999999989999998776544333345788999999984
No 57
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=3.9e-15 Score=82.91 Aligned_cols=62 Identities=23% Similarity=0.366 Sum_probs=54.2
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCC-CCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFT-RDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+..+|++++|++++|||||+.++..+.+. ..+.||++.++.......++ .+.+++|||+|.
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 70 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc
Confidence 456799999999999999999999999885 47889999998877766666 689999999984
No 58
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=1.4e-15 Score=87.06 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=46.1
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
....+||+++|+++||||||+.++..+.+...+.||++.++... +..++ .+.+.+|||+|.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~ 83 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQ 83 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTC
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCc
Confidence 45679999999999999999999999999988999999887655 44454 789999999985
No 59
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.63 E-value=3.2e-15 Score=83.79 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=54.2
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeE-EEEEEeCC----------EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSS-MIQRYCRG----------TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~----------~~~l~i~Dt~G~ 70 (71)
+.+..+||+++|++++|||||++++..+.+...+.||++.++. .+....++ .+.+.+|||+|.
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 80 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc
Confidence 3466799999999999999999999999998889999999887 55555543 589999999984
No 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.63 E-value=2.4e-15 Score=82.45 Aligned_cols=58 Identities=28% Similarity=0.390 Sum_probs=49.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+|++++|++++|||||+.++..+.+...+.|+++..+. .....++ .+.+++|||+|.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~D~~G~ 61 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR-KEIEVDSSPSVLEILDTAGT 61 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEE-EEEEECCEEEEEEEEECCCc
Confidence 589999999999999999999999999889999986654 4444454 788999999984
No 61
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.63 E-value=2.7e-15 Score=82.36 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=50.3
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..+|++++|++++|||||+.++..+.+...+.||.+..+.......+..+.+.+|||+|.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~ 62 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCc
Confidence 358999999999999999999999999988999999877544433344789999999984
No 62
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.63 E-value=2.7e-15 Score=83.97 Aligned_cols=61 Identities=26% Similarity=0.277 Sum_probs=50.8
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+|++++|++++|||||++++..+.+...+.+|.+..+.......+..+.+++|||+|.
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 62 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 62 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCc
Confidence 3579999999999999999999999999988999997655544444344788999999984
No 63
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.63 E-value=3.7e-15 Score=84.89 Aligned_cols=61 Identities=31% Similarity=0.463 Sum_probs=51.9
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
+..+|++++|++|+|||||+++++...|...+.||++.++....+..++ .+.+.+|||+|.
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~ 64 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 4579999999999999999999999999888999999888887777776 688999999984
No 64
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=2.9e-15 Score=82.61 Aligned_cols=60 Identities=28% Similarity=0.437 Sum_probs=50.2
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..+||+++|++++|||||++++..+.+...+.|+++..+.......+..+.+.+|||+|.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~ 61 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCc
Confidence 358999999999999999999999999888999998776544333334789999999984
No 65
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=3.4e-15 Score=85.19 Aligned_cols=62 Identities=21% Similarity=0.374 Sum_probs=53.9
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+..+||+++|++++|||||+.++..+.+...+.|+++.++....+..++ .+.+.+|||+|.
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 34569999999999999999999999999888999999999888877776 689999999984
No 66
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.62 E-value=3e-15 Score=83.59 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=51.2
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
....+||+++|++++|||||++++..+.+...+.+|.+..+.......+..+.+.+|||+|.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCC
Confidence 34579999999999999999999999999989999999877544443344789999999984
No 67
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.62 E-value=2.4e-15 Score=86.11 Aligned_cols=62 Identities=24% Similarity=0.265 Sum_probs=49.6
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
....+||+++|+++||||||+.++..+.+...+.+|++..+.......+..+.+++|||+|.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCS
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCc
Confidence 34579999999999999999999999999999999998766554444455899999999984
No 68
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.62 E-value=6.4e-16 Score=89.14 Aligned_cols=64 Identities=23% Similarity=0.393 Sum_probs=56.0
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
......+||+++|+++||||||+++++.+.|...+.++.+.++.......++ .+.+.+|||+|.
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 74 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh
Confidence 4456779999999999999999999999999888999999888877777665 789999999984
No 69
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=4.1e-15 Score=84.01 Aligned_cols=61 Identities=33% Similarity=0.462 Sum_probs=51.1
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+||+++|++++|||||+.++..+.+...+.||++..+.......+..+.+.+|||+|.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 66 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGS 66 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGG
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCCh
Confidence 4569999999999999999999999999988999999776544333334789999999984
No 70
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=4.2e-16 Score=88.14 Aligned_cols=63 Identities=27% Similarity=0.381 Sum_probs=55.8
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIG 69 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G 69 (71)
.+.+..+||+++|+++||||||+.++..+.|...+.++.+.++....+..++ .+.+.+|||+|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 81 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG 81 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHH
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Confidence 4456789999999999999999999999999989999999888887777654 78999999987
No 71
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.61 E-value=6e-15 Score=83.05 Aligned_cols=62 Identities=27% Similarity=0.323 Sum_probs=50.4
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
....+||+++|+++||||||+.++..+.+...+.+|.+..+.......+..+.+.+|||+|.
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 79 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCCh
Confidence 34569999999999999999999999999888899998766544333334789999999984
No 72
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.61 E-value=1.9e-15 Score=86.79 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=54.1
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-----------EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-----------TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-----------~~~l~i~Dt~G~ 70 (71)
+.+..+||+++|+++||||||+.++..+.|...+.||++.++..+.+..++ .+.+++|||+|.
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 94 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence 346679999999999999999999999999888999999988776665543 688999999883
No 73
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.60 E-value=4.5e-16 Score=88.39 Aligned_cols=62 Identities=26% Similarity=0.409 Sum_probs=24.9
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhC--cCCCCccCCcceeeEEEEEEeCC---EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRG--TFTRDYKKTIGVKSSMIQRYCRG---TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~--~f~~~~~~t~~~~~~~~~~~~~~---~~~l~i~Dt~G~ 70 (71)
....+||+++|++++|||||+.++..+ .|...+.||++.++....+..++ .+.+.+|||+|.
T Consensus 17 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 83 (208)
T 2yc2_C 17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS 83 (208)
T ss_dssp EEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc
Confidence 356799999999999999999999988 88888999999888877777765 789999999984
No 74
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.60 E-value=1.1e-15 Score=86.23 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=39.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhC--cCCCCccCCcceeeEEEEEEe----CCEEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRG--TFTRDYKKTIGVKSSMIQRYC----RGTFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~--~f~~~~~~t~~~~~~~~~~~~----~~~~~l~i~Dt~G~ 70 (71)
.+|++++|+++||||||+++++.. .|...+.||++.++....+.. +..+.+++|||+|.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR 66 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC
Confidence 479999999999999999999974 677778999999887665543 24678999999983
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.60 E-value=9.3e-15 Score=79.91 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=49.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.+|++++|++++|||||+.++..+.+...+.++.+..+.......+..+.+.+|||+|.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 61 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCc
Confidence 48999999999999999999999999888889998766444333344789999999984
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.59 E-value=6.4e-16 Score=86.96 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=48.4
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCc-----------cCCcceeeEEEEE-EeC-CEEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDY-----------KKTIGVKSSMIQR-YCR-GTFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~-----------~~t~~~~~~~~~~-~~~-~~~~l~i~Dt~G~ 70 (71)
.+....+||+++|+++||||||+ +++.+.|...+ .||++.++....+ ..+ ..+.+++|||+|.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 84 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ 84 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC
T ss_pred hccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCCh
Confidence 34567899999999999999999 67777777664 4577777665444 333 4789999999994
No 77
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=80.31 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=44.7
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
..+|++++|+++||||||++++..+.+... .++.+.++..+.+..++ .+.+.+|||+|.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 62 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC--
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCC
Confidence 468999999999999999999998888754 46677777777777766 689999999984
No 78
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=1.3e-14 Score=84.25 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=46.7
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHh--CcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCR--GTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~--~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.....+||+++|+++||||||+.+|.. ..|...+ ++++.++..+.+..++ .+.+.+|||+|.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~ 97 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWEN 97 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTT
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCC
Confidence 345679999999999999999999985 3445444 5678787777776666 788999999985
No 79
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.57 E-value=1.2e-14 Score=82.04 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=50.0
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
....+||+++|++++|||||+.++..+.+...+.||++.++.. +. .+.+.+++|||+|.
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~-~~~~~~~l~Dt~G~ 77 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT-KGNVTIKLWDIGGQ 77 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE-ETTEEEEEEEECCS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE-eCCEEEEEEECCCC
Confidence 3457999999999999999999999999988899999987643 33 34588999999984
No 80
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.57 E-value=1.7e-14 Score=79.63 Aligned_cols=59 Identities=14% Similarity=0.003 Sum_probs=41.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
.+|++++|+++||||||+.++....+...+.++.+.++....+..++ .+.+.+|||+|.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 61 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCc
Confidence 48999999999999999999998877776667777777777777766 789999999985
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.55 E-value=2.5e-14 Score=80.81 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=45.8
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCC-CccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTR-DYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.+....||+++|+++||||||++++..+.|.. .|.||++..+ ..+. ...+.+++|||+|.
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~~i~Dt~G~ 73 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFE-KGRVAFTVFDMGGA 73 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEE-ETTEEEEEEEECCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEE-eCCEEEEEEECCCC
Confidence 45567999999999999999999999999988 8899999433 3333 44689999999985
No 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.55 E-value=9e-16 Score=87.35 Aligned_cols=63 Identities=27% Similarity=0.400 Sum_probs=56.0
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
..+..+||+++|+++||||||++++..+.+...+.|+++.++....+..++ .+.+.+|||+|.
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 92 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 345679999999999999999999999999888899999999888887776 689999999984
No 83
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.55 E-value=3.3e-14 Score=80.85 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=45.7
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHh--CcCCCCccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCR--GTFTRDYKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~--~~f~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
...+||+++|+++||||||+++|+. ..|...+ ++++.++..+.+..++ .+.+.+|||+|.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~ 66 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWEN 66 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccC
Confidence 3469999999999999999999995 4455544 5577777777776666 788999999874
No 84
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.54 E-value=3.9e-14 Score=78.64 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=43.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.++++++|+++||||||++++....+...+.|++..++....+..++ ..+++|||+|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~i~Dt~G~ 60 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGV 60 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT-EEEEEEECCCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC-cEEEEEECCCc
Confidence 48999999999999999999998877666667776666666565555 68999999995
No 85
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.53 E-value=1.8e-14 Score=82.52 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=44.8
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeC-C-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR-G-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~-~~~l~i~Dt~G~ 70 (71)
....+|++++|++++|||||+.++..+.|...+.++ ..++.. +..+ . .+.+++|||+|.
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~ 64 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGH 64 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCC
Confidence 455799999999999999999999999998887544 445543 3333 2 689999999995
No 86
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.53 E-value=2.5e-14 Score=79.45 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=50.6
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...++|+++|++++|||||+.++..+.+...+.|++..++....+..++ ..+.+|||+|.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~ 65 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND-KKITFLDTPGH 65 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT-EEEEESCCCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC-ceEEEEECCCC
Confidence 4568999999999999999999999999888888887777666666665 46789999984
No 87
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.53 E-value=4.6e-14 Score=85.01 Aligned_cols=61 Identities=25% Similarity=0.259 Sum_probs=51.3
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+|++++|++++|||||+.++..+.|...+.+|++..+.......+..+.+++|||+|.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 213 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCc
Confidence 3458999999999999999999999999999999998777544433344889999999984
No 88
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.53 E-value=6e-14 Score=78.69 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=49.1
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..++++++|+++||||||+.+++...+...+.|++..++....+..++ ..+++|||+|.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~ 64 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGV 64 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-EEEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC-cEEEEEECCCc
Confidence 568999999999999999999998777666678777777666666655 78999999985
No 89
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.52 E-value=1.8e-14 Score=82.69 Aligned_cols=63 Identities=24% Similarity=0.451 Sum_probs=52.4
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC--EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG--TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~--~~~l~i~Dt~G~ 70 (71)
.....+||+++|+++||||||+++++.+.+...+.+|++..+........+ .+.+.+|||+|.
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCc
Confidence 345679999999999999999999999999988899999887766666543 489999999984
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=3.9e-14 Score=79.72 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=47.3
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
....+||+++|+++||||||++++..+.+. .+.||++... ..+..++ +.+++|||+|.
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~-~~~~i~Dt~G~ 70 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN-TRFLMWDIGGQ 70 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT-EEEEEEECCC-
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC-EEEEEEECCCC
Confidence 355799999999999999999999998887 6789988543 4444454 88999999984
No 91
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.51 E-value=8.8e-15 Score=90.13 Aligned_cols=53 Identities=15% Similarity=0.061 Sum_probs=43.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCcCCC---CccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRGTFTR---DYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~~f~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
|++++|+++||||||+.++..+.++. .+.||+|.++.. + +..++++||||||+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~~~v~LqIWDTAGQ 56 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--STLIDLAVMELPGQ 56 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--CSSSCEEEEECCSC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--ccEEEEEEEECCCc
Confidence 78999999999999999887654443 367999988863 2 45689999999996
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.51 E-value=4.5e-14 Score=79.61 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=47.1
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCc-CCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGT-FTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
....+||+++|++++|||||++++..+. +...+.||++ +....+..++ +.+.+|||+|.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~l~Dt~G~ 77 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS-LSFTVFDMSGQ 77 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS-CEEEEEEECCS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC-EEEEEEECCCC
Confidence 4467999999999999999999999887 6777889998 4445555554 78999999984
No 93
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.26 E-value=1.3e-15 Score=86.82 Aligned_cols=61 Identities=25% Similarity=0.280 Sum_probs=51.6
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+||+++|++++|||||+.++..+.|...+.||++..+.......+..+.+++|||+|.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88 (204)
Confidence 5679999999999999999999999999988999998777544444445788999999984
No 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.50 E-value=9.2e-14 Score=77.93 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=46.7
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+|++++|++++|||||++++..+. ...+.||++.. ...+..+ .+.+++|||+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~-~~~~~~~Dt~G~ 72 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR-GFKLNIWDVGGQ 72 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET-TEEEEEEEECCS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC-CEEEEEEECCCC
Confidence 567999999999999999999999888 66788999844 3444444 488999999985
No 95
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.50 E-value=5.9e-14 Score=77.09 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=43.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
+|++++|+++||||||+.++..+.|.. +.||++. ....+.. +.+.+++|||+|.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~-~~~~~~i~Dt~G~ 54 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY-KNISFTVWDVGGQ 54 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC-SSCEEEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE-CCEEEEEEEcCCC
Confidence 589999999999999999999888874 6789884 3333433 4588999999985
No 96
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.49 E-value=6.7e-14 Score=76.99 Aligned_cols=58 Identities=12% Similarity=-0.027 Sum_probs=37.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.+|++++|+++||||||++++....+. .+.++.+..+.......+..+.+.+|||+|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 59 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 59 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC--
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCC
Confidence 589999999999999999999866654 4457777666433333344889999999984
No 97
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.49 E-value=2.2e-13 Score=77.18 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=45.8
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+|++++|+++||||||++++..+.+. .+.||++.. ...+..++ +.+++|||+|.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~-~~~~i~Dt~G~ 77 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN-IKFTTFDLGGH 77 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT-EEEEEEECCCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC-EEEEEEECCCC
Confidence 34589999999999999999999998886 578898864 34555566 88999999985
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.49 E-value=3.6e-14 Score=79.84 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=46.6
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
+...+|++++|+++||||||+.++..+.+. .+.||+|. ....+..+ .+.+++|||+|.
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~-~~~l~i~Dt~G~ 70 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQ-GFKLNVWDIGGQ 70 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEET-TEEEEEEECSSC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEEC-CEEEEEEECCCC
Confidence 356799999999999999999999987654 57889884 34445555 488999999985
No 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.48 E-value=9.5e-14 Score=78.81 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=45.4
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
....+||+++|+++||||||+.++..+.|. .+.||++. ....+..+ .+.+++|||+|.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~--~~~~~~~~-~~~~~i~Dt~G~ 83 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYK-NICFTVWDVGGQ 83 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE--EEEEEEET-TEEEEEEECC--
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce--eEEEEEEC-CEEEEEEECCCC
Confidence 456799999999999999999999988887 46788883 33444444 488999999984
No 100
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.48 E-value=2.4e-13 Score=74.99 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=45.9
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..+|++++|++++|||||+.++..+.+. .+.||++.. ...+..+ .+.+.+|||+|.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~-~~~~~~~Dt~G~ 61 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTYK-NLKFQVWDLGGL 61 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEET-TEEEEEEEECCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEEC-CEEEEEEECCCC
Confidence 4689999999999999999999999886 467888843 3444445 588999999984
No 101
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.48 E-value=6.4e-14 Score=78.58 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=46.3
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.....+||+++|++++|||||++++..+.| ..+.||++..+ ..+..++ +.+.+|||+|.
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~-~~~~i~Dt~G~ 75 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN-TRFLMWDIGGQ 75 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT-EEEEEEEESSS
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC-EEEEEEECCCC
Confidence 345679999999999999999999999988 56789998654 3444454 88999999985
No 102
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.47 E-value=1e-13 Score=79.11 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=42.1
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+|++++|+++||||||++++..+.+. .+.||++... ..+..++ +.+++|||+|.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~-~~l~i~Dt~G~ 79 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG-MTFTTFDLGGH 79 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT-EEEEEEEECC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC-EEEEEEECCCc
Confidence 34589999999999999999999988875 5788988653 4455566 88999999984
No 103
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.46 E-value=2.5e-13 Score=82.43 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=46.4
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhC--cCC-CCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRG--TFT-RDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~--~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..+|++++|+++||||||++++..+ .+. ..+.+|++.++.. ...++.+.+++|||+|.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~~~~l~i~Dt~G~ 62 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLGNMTLNLWDCGGQ 62 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETTTEEEEEEEECCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCCceEEEEEECCCc
Confidence 4689999999999999999999876 443 2577899877754 33345789999999995
No 104
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.45 E-value=2.4e-13 Score=76.63 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=38.0
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G 69 (71)
.....++++++|++++|||||++++..+.|...+.++.+..........++ .+.+|||+|
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~l~Dt~G 78 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND--ELHFVDVPG 78 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT--TEEEEECCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC--cEEEEECCC
Confidence 345679999999999999999999999887777777777555444444444 589999998
No 105
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.45 E-value=1e-13 Score=77.38 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=45.7
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
+..+|++++|++++|||||+.++..+.+ ..+.||++.. ...+..++ +.+.+|||+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~-~~~~i~Dt~G~ 72 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN-LKLNVWDLGGQ 72 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT-EEEEEEEEC--
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC-EEEEEEECCCC
Confidence 5679999999999999999999998888 5678999843 34444444 88999999984
No 106
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.43 E-value=2.2e-13 Score=76.59 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=46.4
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
+..+|++++|++++|||||++++..+.+.. +.||++. ....+..+ .+.+++|||+|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~-~~~~~~~Dt~G~ 76 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYK-NISFEVWDLGGQ 76 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEET-TEEEEEEEECCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEEC-CEEEEEEECCCC
Confidence 467999999999999999999999888864 6789884 33444444 488999999984
No 107
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.42 E-value=2.8e-13 Score=80.87 Aligned_cols=63 Identities=25% Similarity=0.378 Sum_probs=41.8
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHH-hCcCCCCc-------cCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYC-RGTFTRDY-------KKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~-~~~f~~~~-------~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
+....++|+++|.+|+|||||++++. .+.+...+ .+|++.++....+..++ .+.+.+|||+|-
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGF 75 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCC
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCc
Confidence 34567999999999999999999965 55666666 78888877766665444 679999999984
No 108
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.41 E-value=1.5e-13 Score=77.98 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=41.6
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEE--e--CCEEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRY--C--RGTFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~--~--~~~~~l~i~Dt~G~ 70 (71)
.+...+|++++|+++||||||++++. +.|... ++++.++...... . +..+.+++|||+|.
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 79 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVF-HKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 79 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHH-SCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHH-hcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCC
Confidence 35568999999999999999998655 455443 5666655543332 2 45789999999985
No 109
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.40 E-value=3.1e-12 Score=71.54 Aligned_cols=59 Identities=19% Similarity=0.077 Sum_probs=44.2
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCC-CCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFT-RDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...|++++|+++||||||++++....+. ....|++..++....+..++ ..+.+|||+|.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~ 62 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-MPLHIIDTAGL 62 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-EEEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC-eEEEEEECCCc
Confidence 4589999999999999999999977643 12234555566666676666 45899999984
No 110
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.39 E-value=1.5e-12 Score=71.18 Aligned_cols=57 Identities=23% Similarity=0.046 Sum_probs=39.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCcCC-CCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGTFT-RDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.|++++|++++|||||+.++..+.+. ....++...++.......++ ..+.+|||+|.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~ 59 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-GRFLLVDTGGL 59 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-EEEEEEECGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-ceEEEEECCCC
Confidence 68999999999999999999988754 23335555556556665555 47899999985
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.39 E-value=5.5e-13 Score=74.67 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=42.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G 69 (71)
+|++++|++++|||||++++..+.|...+.|++..+.. ....+ .+.+|||+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~---~~~l~Dt~G 53 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK---NHKIIDMPG 53 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET---TEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC---CEEEEECCC
Confidence 68999999999999999999999998888787664432 23333 689999998
No 112
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.39 E-value=2.4e-12 Score=75.26 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=43.1
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccC--CcceeeEEEEEEeCCEEEEEEEcCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKK--TIGVKSSMIQRYCRGTFTRDYKKTIG 69 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G 69 (71)
....++|+++|.+|+|||||+++++...+.....+ ++..++.......++ ..+.||||+|
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDTpG 87 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-TELVVVDTPG 87 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT-EEEEEEECCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC-ceEEEEECCC
Confidence 34569999999999999999999998888666555 444455555555555 5789999999
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.39 E-value=1.7e-13 Score=88.07 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=42.0
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEE------EEeC---CEEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQ------RYCR---GTFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~------~~~~---~~~~l~i~Dt~G~ 70 (71)
.....+||+++|+++||||||++++..+.|...+.||++.++..+. +..+ ..+.+.+|||+|.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~ 108 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQ 108 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSC
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcH
Confidence 3456799999999999999999999999999899999998887553 1112 2688999999994
No 114
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.38 E-value=1.4e-12 Score=75.57 Aligned_cols=60 Identities=18% Similarity=0.083 Sum_probs=41.6
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+||+++|+++||||||+.+++.+.|.....+....++.......++ +.+.+|||+|.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~ 86 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL-NKYQIIDTPGL 86 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT-EEEEEEECTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC-CeEEEEECCCC
Confidence 4579999999999999999999998887533333333333333333333 78999999995
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.38 E-value=2.4e-12 Score=76.58 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=46.6
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...++++++|+++||||||+++++...+.....|.+..+.....+..++ ..+.+|||+|.
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~-~~~~l~DtpG~ 62 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG-YTINLIDLPGT 62 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-EEEEEEECCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC-eEEEEEECCCc
Confidence 4568999999999999999999998777555556666555554444444 78999999995
No 116
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.34 E-value=5.1e-13 Score=76.64 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=43.8
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCC---CccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTR---DYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
....++++++|++++|||||+.++..+.+.. .+.|+++.++ ..+.+.+|||+|.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~ 65 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGH 65 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCc
Confidence 4567999999999999999999999988765 4667776555 3467899999984
No 117
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.32 E-value=6.8e-12 Score=74.72 Aligned_cols=58 Identities=19% Similarity=0.038 Sum_probs=48.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.++++++|++|+|||||++++....+...+.|++..+........++ ..+.+|||+|.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~ 60 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGI 60 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT-EEEEEEECCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC-ceEEEEeCCCc
Confidence 58999999999999999999998877666778888777776666666 45999999984
No 118
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.31 E-value=1.3e-11 Score=72.77 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=45.0
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCc-CCCCccCC-cceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGT-FTRDYKKT-IGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~-f~~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...++|+++|.+++|||||+.+++... |...+.|+ +..+........++ ..+.||||+|.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~iiDTpG~ 81 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN-REIVIIDTPDM 81 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT-EEEEEEECCGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC-CEEEEEECcCC
Confidence 356899999999999999999999776 66556565 44445545555454 67999999983
No 119
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.31 E-value=2.2e-12 Score=78.98 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=43.9
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..+||+++|+++||||||+.++..+.|... .||++..+. .+.. ..+.++||||+|.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~-~~~~l~i~Dt~G~ 219 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY-KNISFTVWDVGGQ 219 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEE-TTEEEEEEECC--
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEec-CcEEEEEEECCCC
Confidence 457999999999999999999999888765 488886653 3333 3488999999984
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.30 E-value=1e-11 Score=73.90 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=47.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.+++++|+++||||||++++....+...+.|++..+.....+..++. .+.+|||+|.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~-~~~lvDtpG~ 58 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH-LIEITDLPGV 58 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE-EEEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe-EEEEEeCCCc
Confidence 48999999999999999999987765556677777777777766664 8999999995
No 121
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.29 E-value=1.3e-11 Score=69.17 Aligned_cols=58 Identities=26% Similarity=0.303 Sum_probs=43.2
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G 69 (71)
....+|++++|++++|||||++++..+.+. .+.++.+..........+. .+.+|||+|
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~--~~~i~Dt~G 77 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS--KYYFVDLPG 77 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT--TEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC--cEEEEECCC
Confidence 455689999999999999999999988743 4556666554444443343 467999998
No 122
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.29 E-value=8.7e-13 Score=74.28 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=37.3
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCC---CccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTR---DYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...++++++|++++|||||+.++..+.+.. .+.|+++.++ ..+.+.+|||+|.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~ 101 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGH 101 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC--------CCTTCSEEEETTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCC
Confidence 456899999999999999999999888754 3445555433 3467899999984
No 123
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.28 E-value=8.5e-12 Score=79.36 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=46.2
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+|++++|+++||||||+.++..+.+.. +.||++..+. .+.. +.+.+.+|||+|.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~~-~~~~~~l~Dt~G~ 376 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY-KNVKFNVWDVGGQ 376 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEES-SSCEEEEEEECCC
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEEe-CCEEEEEEECCCc
Confidence 456999999999999999999999988764 5689986553 3333 4578999999994
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.27 E-value=1.1e-11 Score=74.21 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=46.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.++++++|.+++|||||++++....+...+.|++..+.....+..++ ..+.+|||+|.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~-~~~~liDtpG~ 60 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPGT 60 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS-CEEEEEECCCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC-CceEEEECcCC
Confidence 58999999999999999999998877655667777666666665544 56788999994
No 125
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.27 E-value=5.2e-13 Score=79.07 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=43.0
Q ss_pred cCceeeeEEEEeCC---------CCCHHHHHHHHHh---CcCCCCccCCc-ceeeEEEEE---------------EeCCE
Q psy2514 8 RGSIKGTVVIVGNG---------AVGKSSMIQRYCR---GTFTRDYKKTI-GVKSSMIQR---------------YCRGT 59 (71)
Q Consensus 8 ~~~~~~ki~v~G~~---------~vGKtsl~~~~~~---~~f~~~~~~t~-~~~~~~~~~---------------~~~~~ 59 (71)
.....+||+++|++ +||||||+++++. +.|...+.||+ +.+|..+.+ ..+..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34567999999999 9999999999998 67777788886 666543322 12347
Q ss_pred EEEEEEc
Q psy2514 60 FTRDYKK 66 (71)
Q Consensus 60 ~~l~i~D 66 (71)
+.++|||
T Consensus 95 ~~l~i~D 101 (255)
T 3c5h_A 95 CKMHIVE 101 (255)
T ss_dssp -CEEEEE
T ss_pred EEEEEEE
Confidence 8899999
No 126
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.26 E-value=6.1e-11 Score=70.34 Aligned_cols=59 Identities=27% Similarity=0.358 Sum_probs=42.2
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcC--CCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTF--TRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...++|+++|.+++|||||++++....+ ...+.++.. .........++ ..+.+|||+|.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~-~~~~~~~~~~~-~~l~liDTpG~ 94 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGL-RPVMVSRTMGG-FTINIIDTPGL 94 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CC-CCEEEEEEETT-EEEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcce-eeEEEEEEECC-eeEEEEECCCC
Confidence 4579999999999999999999998774 333433332 33333444444 58999999994
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.23 E-value=7.7e-12 Score=75.04 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=39.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.++++++|+++||||||+++++...+.....|.+..+... ...+....+++|||+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~--~~~~~~~~l~l~DtpG~ 59 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKS--GLVKKNKDLEIQDLPGI 59 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEE--EECTTCTTEEEEECCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEE--EEEecCCeEEEEECCCc
Confidence 5799999999999999999999765433333544433322 22222457999999995
No 128
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.22 E-value=6.4e-11 Score=69.90 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=38.8
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcce--eeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV--KSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~--~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
....++|+++|.+++|||||+++++...+.....++.+. .........++ ..+.+|||+|-
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-~~i~liDTPG~ 80 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK-CHVEVVDTPDI 80 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT-EEEEEEECCSC
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC-cEEEEEECCCC
Confidence 345799999999999999999999987765433332221 23333334444 67899999983
No 129
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.22 E-value=1.7e-11 Score=70.37 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=40.5
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEe--CCEEEEEEEcCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC--RGTFTRDYKKTIG 69 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~--~~~~~l~i~Dt~G 69 (71)
....++|+++|++++|||||+++++.+.+.....++.+.......... .+...+.+|||+|
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 88 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPG 88 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCC
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCC
Confidence 445789999999999999999999987632222222222222222222 3357799999999
No 130
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=2.1e-11 Score=75.53 Aligned_cols=62 Identities=21% Similarity=0.343 Sum_probs=37.2
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHH-hCcCCCCcc--------CCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYC-RGTFTRDYK--------KTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~-~~~f~~~~~--------~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
....++|+++|++|+|||||+.++. .+.|...+. +|++.++....+..++ .+.+.+|||+|.
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC----
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccc
Confidence 4557999999999999999999965 455554442 6777665544444444 578999999984
No 131
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.19 E-value=1.1e-10 Score=69.43 Aligned_cols=59 Identities=25% Similarity=0.363 Sum_probs=40.8
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCC--CCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFT--RDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...++|+++|++++|||||+++++...+. ..+.++.. +....... .+...+.+|||+|.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~-~~~~~~~~-~~~~~l~iiDTpG~ 97 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGP-RPVMVSRS-RAGFTLNIIDTPGL 97 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCS-SCEEEEEE-ETTEEEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcce-eeEEEEEe-eCCeEEEEEECCCC
Confidence 45799999999999999999999987753 22323322 22222222 23578999999984
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.18 E-value=5e-11 Score=75.18 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=36.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCcCC-CCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGTFT-RDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.+++++|.++||||||+++++.+.+. ....|.+..++.......++ ..+.+|||+|.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~-~~~~l~DT~G~ 59 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-KTFKLVDTCGV 59 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT-EEEEEEECTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC-eEEEEEECCCc
Confidence 47999999999999999999977642 22345555566666666666 35789999994
No 133
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.16 E-value=2e-11 Score=76.97 Aligned_cols=59 Identities=14% Similarity=-0.015 Sum_probs=39.6
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCC-CCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFT-RDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..+|++++|.++||||||+++++...+. .+..|++..+.....+..++ ..+.+|||+|.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~l~DT~G~ 233 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-QEFVIVDTAGM 233 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT-EEEEETTHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC-eEEEEEECCCc
Confidence 4589999999999999999999987763 23345444455555555565 35899999983
No 134
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.16 E-value=3.1e-10 Score=68.88 Aligned_cols=59 Identities=22% Similarity=0.188 Sum_probs=40.9
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCC-CccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTR-DYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+++++|.++||||||+++++...+.. ...|....+.... +...+...+.+|||+|.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~-i~~~~~~~l~l~DTpG~ 65 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRG-ILTEGRRQIVFVDTPGL 65 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEE-EEEETTEEEEEEECCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEE-EEEeCCcEEEEecCccc
Confidence 45689999999999999999999887752 2333222222222 22334578999999994
No 135
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.16 E-value=2.6e-11 Score=69.05 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=35.8
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.....+++++|++|+|||||+++++...+...+.|+.|..+.......++ .+.+|||+|.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~--~~~l~Dt~G~ 82 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD--GKRLVDLPGY 82 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET--TEEEEECCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC--CEEEEECcCC
Confidence 34568999999999999999999987776555667777655433333333 4779999984
No 136
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.12 E-value=4.7e-10 Score=68.09 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=44.3
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhCcCCC-CccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTR-DYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..++..-.++++|.++||||||+++++...+.. ...|....+........+....+.+|||+|.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~ 69 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 69 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCC
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCC
Confidence 345677899999999999999999999887752 2223222233333344443688999999994
No 137
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.10 E-value=6.4e-11 Score=75.01 Aligned_cols=59 Identities=14% Similarity=0.020 Sum_probs=40.7
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCc-CCCCccCCcceeeEEEEEEeCCEEEEEEEcCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGT-FTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G 69 (71)
...+|++++|++++|||||+.++.... +.....|++..+.....+..++. .+.||||+|
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~-~~~l~DT~G 252 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ-EFVIVDTAG 252 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE-EEEETTGGG
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc-eEEEEECCC
Confidence 456899999999999999999999654 22233455555555555555664 799999999
No 138
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.08 E-value=1.2e-10 Score=74.43 Aligned_cols=59 Identities=14% Similarity=-0.033 Sum_probs=32.7
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcC-CCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTF-TRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..++++++|.+++|||||++++...+. .....|++..++....+..++ +.+.+|||+|.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g-~~l~liDT~G~ 291 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK-TMFRLTDTAGL 291 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT-EEEEEEC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-eEEEEEECCCC
Confidence 358899999999999999999997653 223345555566656666666 67999999983
No 139
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.08 E-value=1.3e-10 Score=70.55 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=31.9
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhC-cCCCCc--------cCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRG-TFTRDY--------KKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~-~f~~~~--------~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
....++++++|++|+|||||+.++... .++.++ .++++..........++ ...+.+|||+|.
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence 456799999999999999999997653 565543 23333322222222233 578999999884
No 140
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.05 E-value=4.1e-10 Score=71.05 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=39.6
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcC--CCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTF--TRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..+|++++|++|||||||+++++...+ ..++ |++..+.....+..++. .+.+|||+|.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~-~gtT~d~~~~~i~~~g~-~~~l~Dt~G~ 238 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPI-PGTTRDPVDDEVFIDGR-KYVFVDTAGL 238 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCC-C------CCEEEEETTE-EEEESSCSCC
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCC-CCCcCCceEEEEEECCE-EEEEEECCCC
Confidence 358999999999999999999997764 2333 44434444445555663 6789999984
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.05 E-value=1e-10 Score=74.56 Aligned_cols=58 Identities=22% Similarity=0.173 Sum_probs=40.5
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCC-CCccCCcceeeEEEEEEeCCEEEEEEEcCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFT-RDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G 69 (71)
..++++++|.+++|||||++++....+. ....|++..++....+..++ ..+.+|||+|
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-~~v~liDT~G 281 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG-IPVQVLDTAG 281 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT-EEEEECC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC-EEEEEEECCc
Confidence 3578999999999999999999976542 23345555556555555565 6789999998
No 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.00 E-value=1.5e-10 Score=74.14 Aligned_cols=57 Identities=25% Similarity=0.224 Sum_probs=43.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcC--CCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTF--TRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.++++++|.++||||||++++...++ ..++ |.+..++....+..++ ..+.+|||+|.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~-~gTT~d~~~~~i~~~g-~~~~l~DTaG~ 301 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDI-PGTTRDVISEEIVIRG-ILFRIVDTAGV 301 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCS-SCCSSCSCCEEEEETT-EEEEEEESSCC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCC-CCeeeeeEEEEEecCC-eEEEEEECCCc
Confidence 38999999999999999999997654 3444 4444456656666665 57899999994
No 143
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.99 E-value=1.1e-09 Score=69.18 Aligned_cols=62 Identities=24% Similarity=0.277 Sum_probs=38.3
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCCCC--------ccCCcceeeEEEEEEeCC-EEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRD--------YKKTIGVKSSMIQRYCRG-TFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~--------~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~G~ 70 (71)
....++++++|++|+|||||+.+++...+... ..++++.++........+ ...+.+|||+|.
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~ 98 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGF 98 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC--
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhh
Confidence 45678999999999999999999998776321 124444333333333333 457999999873
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.98 E-value=1.2e-09 Score=67.88 Aligned_cols=58 Identities=19% Similarity=0.061 Sum_probs=37.4
Q ss_pred eee-EEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 12 KGT-VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~k-i~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
.++ ++++|.+++|||||++++....+.....+....+.....+..++ ..+.+|||+|-
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~DT~G~ 236 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGF 236 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT-EEEEEEECCCB
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC-EEEEEEeCCCc
Confidence 355 99999999999999999998766432222222345556666666 56899999984
No 145
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.97 E-value=2.4e-09 Score=66.02 Aligned_cols=60 Identities=22% Similarity=0.067 Sum_probs=40.6
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...++++++|.+|||||||++++....+.....|....+........+ ...+.+|||+|.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~ 224 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG-YFRYQIIDTPGL 224 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET-TEEEEEEECTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec-CceEEEEeCCCc
Confidence 346899999999999999999999776532222222222333333333 467999999995
No 146
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.97 E-value=2e-09 Score=64.21 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=25.8
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFT 38 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~ 38 (71)
....+|+++|++++|||||+++++...+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 34679999999999999999999988874
No 147
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.97 E-value=1.4e-10 Score=73.36 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=40.4
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcCC-CCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFT-RDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
....++++++|..++|||||+.++....+. .+..+.+..+.....+...+...+.+|||+|.
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~ 93 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL 93 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSST
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCC
Confidence 345799999999999999999999987763 23334444455556666665558999999984
No 148
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.94 E-value=8.1e-10 Score=68.83 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=37.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcCCC-Ccc-CCcceeeEEEEEEeCC----------------EEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTR-DYK-KTIGVKSSMIQRYCRG----------------TFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f~~-~~~-~t~~~~~~~~~~~~~~----------------~~~l~i~Dt~G~ 70 (71)
.++++++|.++||||||++++....+.. +|. +|+..+.. .+..++ +..+++|||+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGL 76 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCC
Confidence 3789999999999999999999876532 221 24443332 122232 257999999984
No 149
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.94 E-value=2.7e-09 Score=64.63 Aligned_cols=59 Identities=25% Similarity=0.328 Sum_probs=39.8
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCC-CccC-CcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTR-DYKK-TIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~-~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
....+++++|.+++|||||+++++...+.. ...| +.. +...... ..+...+.+|||+|.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr-~~~~gi~-~~~~~~i~~iDTpG~ 66 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-HRIVGIH-TEGAYQAIYVDTPGL 66 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-SCEEEEE-EETTEEEEEESSSSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcce-eeEEEEE-EECCeeEEEEECcCC
Confidence 445689999999999999999999876632 2223 222 1222222 234578999999984
No 150
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.92 E-value=2e-09 Score=67.70 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=35.6
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCC----------------EEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG----------------TFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~----------------~~~l~i~Dt~G~ 70 (71)
....++.++|.++||||||++++....+.....|....+.....+...+ +..+++|||+|-
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 4468999999999999999999997766443344443333333343332 235999999984
No 151
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.91 E-value=3.7e-11 Score=77.87 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=47.0
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+++++|.+++|||||+.++....+...+.+++..++....+..++...+.+|||+|.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh 62 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH 62 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCCh
Confidence 357899999999999999999998888776777777666555444433457899999984
No 152
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.90 E-value=8.5e-09 Score=64.54 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=40.8
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHH---hCcCCCCccC--CcceeeEEEEEEe-------------C--C-----EEEEE
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYC---RGTFTRDYKK--TIGVKSSMIQRYC-------------R--G-----TFTRD 63 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~---~~~f~~~~~~--t~~~~~~~~~~~~-------------~--~-----~~~l~ 63 (71)
....++++++|..++|||||+.++. .+.+..++.+ |+...|....+.. + + ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3456999999999999999999998 3445555556 7766666544432 1 1 27899
Q ss_pred EEcCCC
Q psy2514 64 YKKTIG 69 (71)
Q Consensus 64 i~Dt~G 69 (71)
+|||+|
T Consensus 85 iiDtPG 90 (408)
T 1s0u_A 85 FVDSPG 90 (408)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 999998
No 153
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.90 E-value=5e-10 Score=70.95 Aligned_cols=58 Identities=28% Similarity=0.290 Sum_probs=35.9
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeC-CEEEEEEEcCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR-GTFTRDYKKTIG 69 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G 69 (71)
...+|+++|.++||||||+++++...+.. ..++.|........... ....+.+|||+|
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G 80 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGG 80 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCC
Confidence 35799999999999999999999876642 23334433322222222 245799999999
No 154
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.90 E-value=7e-09 Score=65.64 Aligned_cols=61 Identities=16% Similarity=0.008 Sum_probs=42.1
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhC-------------------------------cCCCCccCCcceeeEEEEEEeC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRG-------------------------------TFTRDYKKTIGVKSSMIQRYCR 57 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~-------------------------------~f~~~~~~t~~~~~~~~~~~~~ 57 (71)
....++++++|..++|||||+.+++.. .+..+..+.+..+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 345689999999999999999999532 2222233455555554444444
Q ss_pred CEEEEEEEcCCCC
Q psy2514 58 GTFTRDYKKTIGA 70 (71)
Q Consensus 58 ~~~~l~i~Dt~G~ 70 (71)
+ ..+.||||+|.
T Consensus 94 ~-~~~~iiDTPGh 105 (439)
T 3j2k_7 94 K-KHFTILDAPGH 105 (439)
T ss_pred C-eEEEEEECCCh
Confidence 4 58999999984
No 155
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.88 E-value=4.5e-10 Score=70.81 Aligned_cols=57 Identities=26% Similarity=0.286 Sum_probs=32.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcce--eeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV--KSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~--~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..+|+++|.++||||||+++++...+.. ..++.|. +........+ ...+.+|||+|.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~-~~~~~l~DT~G~ 61 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWL-NYDFNLIDTGGI 61 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTC-SSCCEEEC----
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEEC-CceEEEEECCCC
Confidence 3689999999999999999999776532 2333333 2222222222 357899999994
No 156
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.86 E-value=4.9e-09 Score=65.79 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=20.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCcC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGTF 37 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~f 37 (71)
++++++|.++||||||+++++....
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~ 25 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV 25 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 5899999999999999999997653
No 157
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.86 E-value=2.2e-08 Score=62.65 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=43.7
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHH---hCcCCCCccC--CcceeeEEEEEEe----------------CC----EEEEE
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYC---RGTFTRDYKK--TIGVKSSMIQRYC----------------RG----TFTRD 63 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~---~~~f~~~~~~--t~~~~~~~~~~~~----------------~~----~~~l~ 63 (71)
....++++++|..++|||||+.++. .+.+.+++.+ |+...|....... +. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998 3445555556 7766665544432 11 27899
Q ss_pred EEcCCC
Q psy2514 64 YKKTIG 69 (71)
Q Consensus 64 i~Dt~G 69 (71)
+|||+|
T Consensus 87 iiDtPG 92 (410)
T 1kk1_A 87 FIDAPG 92 (410)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 999998
No 158
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.81 E-value=3e-09 Score=63.53 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=33.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
++++++|.++||||||++++....... ..++.|.......+..+ ..+.+|||+|-
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~--~~~~l~DtpG~ 154 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE--NGVKILDTPGI 154 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT--TSCEEESSCEE
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC--CCEEEEECCCc
Confidence 699999999999999999998765532 23333332222222222 25789999984
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.80 E-value=1.4e-08 Score=64.99 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=37.2
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCc-------CCCCccCCcceeeEEEEEEeCCEEEEEEEcCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGT-------FTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~-------f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G 69 (71)
.....++++++|..++|||||+.++.... +..+..+.+..+.....+..++ ..+.+|||+|
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~i~iiDtPG 82 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-YRITLVDAPG 82 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-EEEEECCCSS
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC-EEEEEEECCC
Confidence 34457999999999999999999998765 3333333332222222233344 7899999998
No 160
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.78 E-value=9.8e-09 Score=65.52 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.5
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
....+|++++|.+++|||||+.+++..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345699999999999999999999754
No 161
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.77 E-value=9e-10 Score=63.37 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=34.4
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeE
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSS 50 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~ 50 (71)
...+++++|++|||||||+.+++...|...+.++++.++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 4689999999999999999999988777767788887764
No 162
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.76 E-value=2.1e-09 Score=66.39 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=37.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCcCC-CCcc-CCcceeeEEEEEEeCCEEEEEEEcCCC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGTFT-RDYK-KTIGVKSSMIQRYCRGTFTRDYKKTIG 69 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~l~i~Dt~G 69 (71)
.+|+++|.++||||||++++....+. .+|. .|....+ ..+..++...+.+|||+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~~~~~~~l~DtPG 215 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDDGRSFVMADLPG 215 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSSSCEEEEEEHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeCCCceEEEecCCC
Confidence 46889999999999999999866532 2332 3333222 334444446789999987
No 163
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.75 E-value=1.3e-08 Score=62.61 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=25.1
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFT 38 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~ 38 (71)
...+|+++|++++|||||+++++...|.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4579999999999999999999988774
No 164
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.74 E-value=2.3e-08 Score=61.57 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=24.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhCcCC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRGTFT 38 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~~f~ 38 (71)
...|+++|++++|||||++++....|.
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~l 60 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFL 60 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcC
Confidence 359999999999999999999988773
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.71 E-value=1e-08 Score=64.67 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=23.2
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
...++++++|..++|||||+.+++.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999864
No 166
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.71 E-value=4.3e-08 Score=58.93 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=25.0
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTF 37 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f 37 (71)
....+|+++|.+++|||||+++++...+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 4457999999999999999999998776
No 167
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.71 E-value=6.1e-08 Score=60.91 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=41.9
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhCcC-CCCccCCcceeeEEEEEEeCC----------------EEEEEEEcCCC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTF-TRDYKKTIGVKSSMIQRYCRG----------------TFTRDYKKTIG 69 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~----------------~~~l~i~Dt~G 69 (71)
.....++.++|.+|+|||||++.++.... .....|....+...-.+...+ ...+++||++|
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 34467999999999999999999998665 333445443333333343333 14689999988
No 168
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.68 E-value=5.8e-08 Score=64.44 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=40.5
Q ss_pred CcccccccCceeeeEEEEeCCCCCHHHHHHHHHh--CcCCC------------------CccCCcceeeEEEEEEeCCEE
Q psy2514 1 MLNLWVLRGSIKGTVVIVGNGAVGKSSMIQRYCR--GTFTR------------------DYKKTIGVKSSMIQRYCRGTF 60 (71)
Q Consensus 1 m~~~~~~~~~~~~ki~v~G~~~vGKtsl~~~~~~--~~f~~------------------~~~~t~~~~~~~~~~~~~~~~ 60 (71)
|...+........+++++|..++|||||+.+++. +.+.. .+.+|+.... ..+..+ .+
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~--~~~~~~-~~ 77 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV--TTCFWK-DH 77 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCE--EEEEET-TE
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccce--EEEEEC-Ce
Confidence 3444444456779999999999999999999984 22210 2234444322 222223 47
Q ss_pred EEEEEcCCCC
Q psy2514 61 TRDYKKTIGA 70 (71)
Q Consensus 61 ~l~i~Dt~G~ 70 (71)
.+++|||+|.
T Consensus 78 ~i~liDTPG~ 87 (691)
T 1dar_A 78 RINIIDTPGH 87 (691)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEECcCc
Confidence 8999999985
No 169
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.67 E-value=2.8e-08 Score=61.98 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCc
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGT 36 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~ 36 (71)
+++.++|.+++|||||++++....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998654
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.65 E-value=4.6e-08 Score=64.21 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.7
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
....++++++|.+++|||||+.+++..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHh
Confidence 345689999999999999999999855
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.65 E-value=1.3e-08 Score=66.64 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.2
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
....++++++|.+++|||||+.+++
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll 198 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIM 198 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHH
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHH
Confidence 3456899999999999999999996
No 172
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.60 E-value=7.3e-08 Score=64.02 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=28.1
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcC-CCCccCCc
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTF-TRDYKKTI 45 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f-~~~~~~t~ 45 (71)
...++|+++|.+++|||||+++++...+ +....|++
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 3468999999999999999999997664 33344554
No 173
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.59 E-value=1.6e-07 Score=59.27 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=23.2
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
...++++++|..++|||||+.+++.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhh
Confidence 45689999999999999999999854
No 174
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.58 E-value=3.9e-08 Score=61.44 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=38.6
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhC--------cCCCC-------ccCCcceeeEEEEEE-eCCEEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRG--------TFTRD-------YKKTIGVKSSMIQRY-CRGTFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~--------~f~~~-------~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~ 70 (71)
+....++++++|..++|||||+.++... .|... ...+.|..+...... ......+.+|||+|.
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 4456799999999999999999999862 22210 001222222222222 233577899999984
No 175
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.58 E-value=1.6e-07 Score=63.55 Aligned_cols=27 Identities=11% Similarity=0.163 Sum_probs=23.5
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.....+++++|..++|||||+.+++..
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHh
Confidence 445689999999999999999999853
No 176
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.57 E-value=1e-07 Score=57.42 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=33.3
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCC-CCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFT-RDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..++++++|.++||||||++++...... ....|.+-.+. ..+..+. .+.+|||+|=
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~--~~~l~DtpG~ 175 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK--ELELLDTPGI 175 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT--TEEEEECCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC--CEEEEECcCc
Confidence 4589999999999999999999865422 11122111111 1122222 4789999984
No 177
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.57 E-value=4.4e-08 Score=62.31 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=23.1
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
...++++++|..++|||||+.+++..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45699999999999999999999853
No 178
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.56 E-value=5.8e-09 Score=67.23 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=40.8
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
...+++++|..++|||||+.++....+.....+.+..+.....+..++ ..+.+|||+|.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~-~~i~~iDTPGh 61 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN-GMITFLDTPGH 61 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS-SCCCEECCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC-EEEEEEECCCc
Confidence 457899999999999999999998776654444443333222222233 46889999984
No 179
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.56 E-value=4.1e-08 Score=63.54 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=21.3
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
...+++++|.+++|||||+.+++
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHH
Confidence 46899999999999999999996
No 180
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.56 E-value=3.4e-07 Score=57.25 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=24.8
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhCc
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRGT 36 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~~ 36 (71)
.....++++++|.+++|||||++++....
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 34567999999999999999999998643
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.54 E-value=1.5e-07 Score=62.19 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=38.5
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCccCC----------------cceeeEEEEEE-eCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKT----------------IGVKSSMIQRY-CRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t----------------~~~~~~~~~~~-~~~~~~l~i~Dt~G~ 70 (71)
....+++++|..++|||||+.+++..........+ .++.+...... ..+.+.++||||+|.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 45679999999999999999999843332111111 12222222222 234588999999984
No 182
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.53 E-value=2.8e-07 Score=57.70 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=39.8
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcC-CCCccCCcceeeEEEEEEeCCEEEEEEEcCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTF-TRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G 69 (71)
.-...|.++|.++||||||++++....- ..+|.-|+ .+-..-.+..++ ..+++.||+|
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT-~~~~~g~~~~~~-~~i~l~D~pG 128 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTT-LVTVPGVIRYKG-AKIQMLDLPG 128 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSC-CCEEEEEEEETT-EEEEEEECGG
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCce-eeeeeEEEEeCC-cEEEEEeCCC
Confidence 3346899999999999999999986432 23443332 233444455555 5688999988
No 183
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.51 E-value=2.2e-07 Score=60.22 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=22.8
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....+++++|.+++|||||+.+++.
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHHHHHh
Confidence 4568999999999999999999985
No 184
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.50 E-value=3.1e-07 Score=57.39 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.++++++|..++|||||+.++...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 589999999999999999999863
No 185
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.48 E-value=1.8e-07 Score=60.83 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=25.7
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFT 38 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~ 38 (71)
....+++++|.+++|||||+++++...+.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 34689999999999999999999988773
No 186
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.46 E-value=2.3e-07 Score=59.14 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.9
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....++++++|..++|||||+.+++.
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHH
Confidence 45578999999999999999999874
No 187
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.40 E-value=2.2e-07 Score=65.02 Aligned_cols=63 Identities=14% Similarity=0.024 Sum_probs=36.4
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHHHhC-------cCCC-------CccCCcceeeEEEEEE-eCCEEEEEEEcCCCC
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRYCRG-------TFTR-------DYKKTIGVKSSMIQRY-CRGTFTRDYKKTIGA 70 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~~~~-------~f~~-------~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~ 70 (71)
+....++++++|..++|||||+.++... .|.. ....+.|..+...... ......+.||||+|.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH 369 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH 369 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh
Confidence 3455699999999999999999999863 1110 1123334332221122 234578999999983
No 188
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.39 E-value=1.9e-07 Score=58.10 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=35.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCcCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
+++++|..++|||||+.++. ++..|+...+. .+.. ....+.+|||+|.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~--~~~~-~~~~i~iiDtPGh 70 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMY--NNDK-EGRNMVFVDAHSY 70 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEE--EECS-SSSEEEEEECTTT
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEE--EEec-CCeEEEEEECCCh
Confidence 99999999999999999998 33455554332 2222 2356999999984
No 189
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.38 E-value=1.3e-06 Score=57.40 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.3
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....+++++|..++|||||+.+++.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~ 28 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLE 28 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHh
Confidence 3467999999999999999999985
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.38 E-value=1.2e-06 Score=58.22 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=23.1
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.....+++++|.+++|||||+.+++.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999984
No 191
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.37 E-value=1.2e-06 Score=58.37 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=22.9
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.....+++++|..++|||||+.+++.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999974
No 192
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.37 E-value=4.6e-07 Score=59.51 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=30.5
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhC--cCCC-----Cc------cCCcceeeEEEEEEe-----C-CEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRG--TFTR-----DY------KKTIGVKSSMIQRYC-----R-GTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~--~f~~-----~~------~~t~~~~~~~~~~~~-----~-~~~~l~i~Dt~G~ 70 (71)
...+++++|..++|||||+.+++.. .+.. .+ ....|..+....... + ..+.+++|||+|.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 3578999999999999999999852 2211 11 122333333222211 2 3689999999984
No 193
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.34 E-value=3e-07 Score=60.34 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=38.9
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcCCCC----ccCCcceeeEEEEEE------e-C------CEEEEEEEcCCCC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRD----YKKTIGVKSSMIQRY------C-R------GTFTRDYKKTIGA 70 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~----~~~t~~~~~~~~~~~------~-~------~~~~l~i~Dt~G~ 70 (71)
...+++++|..++|||||+.++....+... ..++++..+...... . + ....+++|||+|.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh 80 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence 357999999999999999999987655432 234555433321100 0 0 1125999999985
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.31 E-value=7e-07 Score=56.47 Aligned_cols=57 Identities=19% Similarity=0.101 Sum_probs=35.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCcC-CCCccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGTF-TRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
..+.++|.+++|||||+++++.... ...|..+.- ......+..++...+.+||+.|-
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl-~p~~G~V~~~~~~~~~l~DtpGl 215 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTL-SPNLGVVEVSEEERFTLADIPGI 215 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSS-CCEEEEEECSSSCEEEEEECCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCccccee-cceeeEEEecCcceEEEEecccc
Confidence 4588999999999999999986532 122221111 11222233343456889999874
No 195
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.23 E-value=2.5e-06 Score=56.10 Aligned_cols=59 Identities=20% Similarity=0.054 Sum_probs=37.4
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcCCCCcc-----CCcceeeEEEEEE--eCCEEEEEEEcCCCC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYK-----KTIGVKSSMIQRY--CRGTFTRDYKKTIGA 70 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f~~~~~-----~t~~~~~~~~~~~--~~~~~~l~i~Dt~G~ 70 (71)
.....|+++|.+++|||+|++++......-... .|.+.- .+... ......+.++||.|-
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~--~~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIW--MWCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEE--EEEEECSSSTTCEEEEEEECCB
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEE--EeecccccCCCceEEEecCCCc
Confidence 445889999999999999999998765211221 223321 11111 123456889999984
No 196
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.06 E-value=5.3e-06 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=21.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.++++++|++|+|||||++.++.-
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999988753
No 197
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.96 E-value=9.4e-06 Score=50.45 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.+++++|.+++|||||++++...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhh
Confidence 57999999999999999999864
No 198
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.93 E-value=6.9e-06 Score=51.04 Aligned_cols=53 Identities=30% Similarity=0.370 Sum_probs=33.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC------cCCCCccCCcceeeEEEEEEeCCEEEEEEEcCCC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG------TFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~------~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G 69 (71)
.+++++|.+++|||||++.+... .......|.+-.+ ......+.. +.++||.|
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~--~~liDtPG 221 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG--ATLYDTPG 221 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT--CEEEECCS
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC--eEEEeCCC
Confidence 57999999999999999999864 2221222222211 122222322 78999988
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.83 E-value=1.2e-05 Score=45.90 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.7
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCc
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGT 36 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~ 36 (71)
...+++++|.+|+|||||+.+++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998653
No 200
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.79 E-value=8.5e-05 Score=47.28 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=23.0
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhCcC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTF 37 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~~f 37 (71)
...++++++|.+|+|||||++.++.-.+
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 3346799999999999999999876544
No 201
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.67 E-value=0.00029 Score=47.74 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=24.4
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhCcC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRGTF 37 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~~f 37 (71)
...+|+++|..++||||+++.++...|
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 457999999999999999999998776
No 202
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.61 E-value=5.2e-05 Score=42.41 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.++++|++|+|||||+..+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3688999999999999998875
No 203
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.56 E-value=7.2e-05 Score=42.17 Aligned_cols=21 Identities=24% Similarity=0.678 Sum_probs=18.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
+++++|++|+|||+|+..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999987764
No 204
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.54 E-value=0.0001 Score=40.72 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.0
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....++++|.+|+|||+++..+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999987763
No 205
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.51 E-value=0.0001 Score=42.50 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.3
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..--++++|++|+|||+|+..+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 345688999999999999999874
No 206
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.51 E-value=8.3e-05 Score=42.29 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.++++|++|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998764
No 207
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.49 E-value=9.1e-05 Score=42.27 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy2514 15 VVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 15 i~v~G~~~vGKtsl~~~~~~ 34 (71)
|+++|++|+||+||+.+++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 208
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.45 E-value=0.00014 Score=41.21 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.2
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....+.++|.+|+||||++..+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999987764
No 209
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.42 E-value=0.00016 Score=40.50 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=22.9
Q ss_pred ccCceeeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 7 ~~~~~~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
+.......++++|.+|+|||++...+...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44445568999999999999999888754
No 210
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.42 E-value=0.00013 Score=40.65 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
-.++++|.+|+||||+++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46889999999999999988754
No 211
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.41 E-value=0.00013 Score=41.06 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-++++|++|+||||++..+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999998875
No 212
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.41 E-value=0.00012 Score=41.01 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=18.0
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy2514 15 VVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 15 i~v~G~~~vGKtsl~~~~~~ 34 (71)
++++|++|+||||+++.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999998874
No 213
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.39 E-value=0.00014 Score=42.28 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--++++|++|+|||||+..+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578899999999999998875
No 214
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.39 E-value=0.00034 Score=45.62 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.2
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
...-++.++|-.+.|||||..+++
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHH
T ss_pred cccceEEEEeCCCCCHHHHHHHHH
Confidence 356789999999999999999985
No 215
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.38 E-value=0.00014 Score=41.49 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
--++++|++|+|||+++..+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45788999999999999998754
No 216
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=0.00017 Score=40.75 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=19.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-.++++|.+|+|||++...+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999998764
No 217
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.36 E-value=0.00016 Score=41.24 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=18.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--++++|++|+|||+|++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3578899999999999998764
No 218
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.35 E-value=0.00016 Score=41.75 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-.++++|++|+|||+|+..+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999998875
No 219
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.32 E-value=0.00019 Score=39.13 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.|++.|.+|+||||+...+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 220
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.30 E-value=0.00024 Score=43.83 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....+.++|.+|+|||||+++++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 368899999999999999999985
No 221
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.30 E-value=0.0002 Score=40.61 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-++++|.+|+|||+++..+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998875
No 222
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.29 E-value=0.00025 Score=40.11 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.1
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....++++|.+|+||||++..+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999998764
No 223
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.28 E-value=0.00017 Score=40.08 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=16.6
Q ss_pred eeEEEEeCCCCCHHHHHHH
Q psy2514 13 GTVVIVGNGAVGKSSMIQR 31 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~ 31 (71)
--++++|++|+|||+|++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3578899999999999994
No 224
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.28 E-value=0.00024 Score=38.87 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
-.+++.|++|+|||+++..+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999887643
No 225
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.27 E-value=0.00039 Score=38.48 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||++...+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988764
No 226
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.25 E-value=0.0003 Score=39.50 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
..++++|.+|+|||+++..+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999988754
No 227
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.24 E-value=0.00028 Score=38.72 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..++++|.+|+|||++.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 228
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.23 E-value=0.00028 Score=40.17 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.3
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
.....+.++|.+|+|||||++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345788999999999999998765
No 229
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.23 E-value=0.00042 Score=39.10 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...|++.|.+|+|||+++..+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998764
No 230
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.22 E-value=0.0003 Score=38.61 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||++...+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4588999999999999998876
No 231
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.22 E-value=0.00032 Score=39.87 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
+|++.|.+|+|||+++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 232
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.21 E-value=0.00033 Score=39.87 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
+|++.|.+|+|||+++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 233
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.21 E-value=0.00032 Score=38.66 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-|++.|.+|+||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998875
No 234
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.20 E-value=0.00031 Score=38.95 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCc
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGT 36 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~ 36 (71)
-.+.++|+.|+|||+|++.++...
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999887543
No 235
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.20 E-value=0.00032 Score=38.07 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=18.0
Q ss_pred eeEEEEeCCCCCHHHHHHHH
Q psy2514 13 GTVVIVGNGAVGKSSMIQRY 32 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~ 32 (71)
.-|++.|.+|+|||++...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999988
No 236
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.20 E-value=0.00043 Score=38.33 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.|++.|.+|+||||++..+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 237
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.19 E-value=0.00033 Score=39.11 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-++++|.+|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478899999999999998874
No 238
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.18 E-value=0.00032 Score=39.55 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|+++|.+|+|||+++..+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998764
No 239
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.18 E-value=0.00049 Score=38.52 Aligned_cols=25 Identities=24% Similarity=0.093 Sum_probs=21.4
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
....|++.|.+|+|||++...+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3467999999999999999988764
No 240
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.17 E-value=0.00036 Score=40.62 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~ 33 (71)
..++++|.+|+||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999887
No 241
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.16 E-value=0.00036 Score=39.69 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--+.++|++|+|||+|+..++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999875
No 242
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.16 E-value=0.00034 Score=40.27 Aligned_cols=21 Identities=24% Similarity=0.552 Sum_probs=18.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~ 33 (71)
--++++|++|+|||+|+..++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 357889999999999999776
No 243
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.15 E-value=0.00042 Score=38.75 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.|++.|.+|+||||++..+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998774
No 244
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.13 E-value=0.00029 Score=39.10 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-.++++|++|+|||+|+..++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999987764
No 245
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.12 E-value=0.0006 Score=37.88 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||++...+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999988764
No 246
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.11 E-value=0.00048 Score=38.94 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=19.9
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...-++++|.+|+|||++...+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999887664
No 247
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.11 E-value=0.00052 Score=38.64 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+++++|.+|+|||+++..+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999998765
No 248
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.10 E-value=0.00036 Score=40.86 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
=.+.++|++|+|||||++.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999987764
No 249
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.10 E-value=0.00051 Score=38.08 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|+++|.+|+|||++...+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 250
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.08 E-value=0.0015 Score=40.22 Aligned_cols=27 Identities=11% Similarity=-0.065 Sum_probs=18.7
Q ss_pred ccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 41 YKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 41 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
+.||+|.. ...+..+ .+.+++|||+|+
T Consensus 151 r~~TiGi~--~~~~~~~-~v~l~iwDtgGQ 177 (327)
T 3ohm_A 151 RVPTTGII--EYPFDLQ-SVIFRMVDVGGQ 177 (327)
T ss_dssp CCCCCSEE--EEEEEET-TEEEEEEEECCS
T ss_pred cCceeeEE--EEEEEee-ceeeEEEEcCCc
Confidence 56778843 3344444 489999999996
No 251
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.08 E-value=0.00056 Score=37.84 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||+++..+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 252
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.07 E-value=0.00066 Score=38.24 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.0
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.....|++.|.+|+|||++...+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999988764
No 253
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.07 E-value=0.00059 Score=41.99 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.7
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.....++++|.+|+||||++.++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 254
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.07 E-value=0.00023 Score=41.05 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=14.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~ 33 (71)
--++++|++|+||||++..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999887
No 255
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.07 E-value=0.00032 Score=38.37 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=20.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.-.+++.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999887753
No 256
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.06 E-value=0.00072 Score=37.44 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...+++.|.+|+|||++...+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998763
No 257
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.06 E-value=0.00049 Score=39.17 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|.+|+|||+++..++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999997764
No 258
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.05 E-value=0.00047 Score=40.05 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.+..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999987764
No 259
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.04 E-value=0.00062 Score=38.82 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..+.++|.+|+||||++..+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987764
No 260
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.04 E-value=0.00066 Score=38.70 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
+|++.|.+|+|||+++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988764
No 261
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.02 E-value=0.00072 Score=39.41 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=20.8
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.....+.++|.+|+||||++..+..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999999998764
No 262
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.02 E-value=0.00057 Score=38.85 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=19.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-.+++.|++|+|||+++..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988764
No 263
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.02 E-value=0.00044 Score=42.61 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-+++++|.+|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998764
No 264
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.00 E-value=0.0009 Score=37.63 Aligned_cols=24 Identities=13% Similarity=0.385 Sum_probs=20.2
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....|++.|.+|+|||++...+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999988763
No 265
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.99 E-value=0.00084 Score=39.26 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=20.9
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....|++.|.+|+|||+++.++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 266
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.99 E-value=0.00071 Score=38.99 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.|+++|++|+||++.+.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988774
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.99 E-value=0.00054 Score=40.74 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.++.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999997764
No 268
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.99 E-value=0.00062 Score=40.07 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.+..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998764
No 269
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.98 E-value=0.00081 Score=38.48 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=19.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...|++.|.+|+|||++...+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999988764
No 270
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.98 E-value=0.0011 Score=37.48 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.1
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.....+.++|.+|+|||+++..+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998865
No 271
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.98 E-value=0.00069 Score=38.17 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=19.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-++++|.+|+|||+++.++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4578999999999999998874
No 272
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.98 E-value=0.00085 Score=37.67 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=19.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||+++..+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 273
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.97 E-value=0.00067 Score=38.22 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-+++.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998764
No 274
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.97 E-value=0.00069 Score=37.81 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999988764
No 275
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.97 E-value=0.00069 Score=37.37 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
+++++|.+|+|||++...+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999988764
No 276
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.96 E-value=0.00069 Score=39.46 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=18.4
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy2514 15 VVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 15 i~v~G~~~vGKtsl~~~~~~ 34 (71)
++++|++|+|||++++.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998774
No 277
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.96 E-value=0.00067 Score=38.47 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-++++|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 477889999999999998873
No 278
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.96 E-value=0.00065 Score=40.06 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.++.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998764
No 279
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.96 E-value=0.00074 Score=42.01 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.0
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHH
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRY 32 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~ 32 (71)
....|++++|.+++|||+++.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45689999999999999998864
No 280
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.96 E-value=0.00087 Score=38.51 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||+++..+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 281
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.96 E-value=0.00094 Score=37.66 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...|++.|.+|+|||+++..+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998774
No 282
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.95 E-value=0.00066 Score=39.76 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999997764
No 283
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.95 E-value=0.00065 Score=42.34 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCc
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRGT 36 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~~ 36 (71)
.++++|.+|+|||||++.+....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58899999999999999888543
No 284
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.94 E-value=0.00065 Score=41.07 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~ 33 (71)
-.++++|.+|+|||||++.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999999988
No 285
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.94 E-value=0.00075 Score=41.81 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=14.2
Q ss_pred ceeeeEEEEeCCCCCHHHH
Q psy2514 10 SIKGTVVIVGNGAVGKSSM 28 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl 28 (71)
...+|++++|..++|||++
T Consensus 3 ~~~~klLLLG~geSGKSTi 21 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTI 21 (340)
T ss_dssp -CCEEEEEEECTTSSHHHH
T ss_pred CCcceEEEECCCCCcHHHH
Confidence 4467888888888888874
No 286
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.94 E-value=0.00062 Score=40.87 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999987764
No 287
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.93 E-value=0.00073 Score=39.66 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.+.++|++|+|||||++.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999998764
No 288
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.93 E-value=0.00092 Score=38.19 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||++...+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999988764
No 289
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.91 E-value=0.00076 Score=40.10 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-.++++|++|+||||+++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 34688999999999999997764
No 290
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.91 E-value=0.0011 Score=36.76 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||++...+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999987753
No 291
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.91 E-value=0.00088 Score=38.32 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|+++|.+|+|||++...+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998764
No 292
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.91 E-value=0.00097 Score=36.33 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
+|++.|.+|+|||++...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988764
No 293
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.91 E-value=0.00097 Score=37.63 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
+.+.++|.+|+||||+...+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.90 E-value=0.00084 Score=40.99 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.0
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
+..-.++++|++|+|||+|+..+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 344578999999999999998766
No 295
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.90 E-value=0.00092 Score=42.54 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.9
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
...+|+++|.+|+|||++..++...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998754
No 296
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.90 E-value=0.00087 Score=37.07 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=19.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...|++.|.+|+|||++...+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35689999999999999998763
No 297
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.90 E-value=0.00084 Score=41.23 Aligned_cols=24 Identities=33% Similarity=0.264 Sum_probs=20.9
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
.....+.++|.+|+|||||++.+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999987
No 298
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.90 E-value=0.00069 Score=40.09 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999997764
No 299
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.89 E-value=0.00081 Score=40.07 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.+.++|++|+|||||++.++.-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999987753
No 300
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.89 E-value=0.0008 Score=39.67 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.+.++|++|+|||||++.++.-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999987753
No 301
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.89 E-value=0.0012 Score=39.87 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=20.1
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
.....+.++|.+|+|||+++..+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999988665
No 302
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.88 E-value=0.0012 Score=36.97 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
..|++.|.+|+||||++..+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999999988764
No 303
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.88 E-value=0.00089 Score=40.40 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCc
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGT 36 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~ 36 (71)
-.++++|.+|+|||||++.+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 357889999999999999887543
No 304
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.88 E-value=0.00086 Score=39.07 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.++.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999997764
No 305
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.88 E-value=0.0011 Score=36.83 Aligned_cols=22 Identities=18% Similarity=0.444 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||++...+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988764
No 306
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.88 E-value=0.0014 Score=36.42 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.0
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....++++|.+|+|||+++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346789999999999999987753
No 307
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.88 E-value=0.00076 Score=40.24 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.+..
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 578999999999999997764
No 308
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.88 E-value=0.00079 Score=39.05 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=18.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||+|++.++.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478899999999999998764
No 309
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.88 E-value=0.00082 Score=38.88 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=20.9
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....-+++.|..|+||||++..+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3456789999999999999987764
No 310
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.88 E-value=0.00085 Score=41.83 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-++++|++|+|||||++.+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 468899999999999998765
No 311
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.87 E-value=0.00075 Score=40.27 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478899999999999997764
No 312
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.87 E-value=0.00099 Score=40.02 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..-+++.|.+|+||||++..+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998874
No 313
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.87 E-value=0.00041 Score=38.97 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|.+|+|||+|+..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999987763
No 314
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.87 E-value=0.00077 Score=39.51 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999987764
No 315
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.86 E-value=0.002 Score=40.77 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
...+.++|.+|+|||||++.+..-
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 347899999999999999988763
No 316
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.86 E-value=0.00096 Score=37.49 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..+++.|++|+|||+++..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999987764
No 317
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.86 E-value=0.00094 Score=38.94 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..+++.|++|+|||++++.+..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999998764
No 318
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.86 E-value=0.0012 Score=36.74 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||++...+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988764
No 319
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.86 E-value=0.00088 Score=39.77 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=18.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.+.++|++|+|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999998764
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.85 E-value=0.00091 Score=40.76 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.8
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....-+.++|.+|+|||||+..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456788999999999999987764
No 321
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.85 E-value=0.0009 Score=39.98 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.++++|++|+|||||++.++.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999987764
No 322
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.84 E-value=0.00085 Score=39.70 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999997764
No 323
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.84 E-value=0.00096 Score=37.68 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--++++|++|+|||+|+..++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999876
No 324
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.84 E-value=0.00095 Score=40.10 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.++++|++|+|||||++.++.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999997764
No 325
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.83 E-value=0.001 Score=38.12 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=19.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
--+.++|++|+|||+|+..++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35788999999999999998863
No 326
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.83 E-value=0.0012 Score=38.03 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.|++.|.+|+|||+++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 327
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.82 E-value=0.00091 Score=39.72 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.++.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999997764
No 328
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.82 E-value=0.0011 Score=39.28 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=18.3
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy2514 15 VVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 15 i~v~G~~~vGKtsl~~~~~~ 34 (71)
++++|++|+|||++++.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999998774
No 329
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.81 E-value=0.001 Score=40.46 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHH
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
.-.++++|.+|+||||++..+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3478889999999999999876
No 330
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.81 E-value=0.0011 Score=39.06 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-++++|.+|+|||++...++.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478899999999999998763
No 331
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.80 E-value=0.0016 Score=38.69 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.2
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
....+++.|++|+|||++++.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998554
No 332
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.80 E-value=0.0013 Score=36.56 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.|++.|.+|+||||++..+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998775
No 333
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.79 E-value=0.0011 Score=38.40 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998764
No 334
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.79 E-value=0.0011 Score=39.61 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=18.4
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy2514 15 VVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 15 i~v~G~~~vGKtsl~~~~~~ 34 (71)
++++|++|+|||+|++.++.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999998774
No 335
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.79 E-value=0.0011 Score=39.45 Aligned_cols=21 Identities=14% Similarity=0.460 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-++++|.+|+|||+|+..++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478899999999999998774
No 336
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.79 E-value=0.0013 Score=36.35 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.|++.|.+|+|||++...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988765
No 337
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.78 E-value=0.0011 Score=40.44 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.++++|++|+|||++++.++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999998774
No 338
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.78 E-value=0.0019 Score=36.56 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=20.1
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....+.++|.+|+|||+++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999987763
No 339
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.78 E-value=0.00098 Score=39.66 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.+..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999997764
No 340
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.77 E-value=0.0011 Score=39.04 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=19.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...+++.|++|+|||++++.+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999998874
No 341
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.77 E-value=0.001 Score=39.42 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999997764
No 342
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.77 E-value=0.0012 Score=39.87 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=19.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.--+++.|++|+|||+++..+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998775
No 343
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.77 E-value=0.0015 Score=37.73 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...|++.|.+|+|||++...+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988764
No 344
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.77 E-value=0.00072 Score=38.99 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.+.++|++|+|||+|+..++.-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999987753
No 345
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.76 E-value=0.0011 Score=41.62 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-+.++|++|+|||+|++.+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 468899999999999998764
No 346
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.76 E-value=0.0012 Score=39.38 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.+.++|++|+|||||++.++.-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999987653
No 347
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.76 E-value=0.0012 Score=39.46 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=19.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
--+++.|++|+|||+|+..+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 35788999999999999998753
No 348
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.75 E-value=0.0013 Score=39.42 Aligned_cols=22 Identities=27% Similarity=0.142 Sum_probs=18.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-+++.|++|+|||++++.++.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4567779999999999998764
No 349
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.75 E-value=0.0011 Score=41.19 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-+.++|++|+|||||++.++.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478899999999999998764
No 350
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.75 E-value=0.0014 Score=35.82 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=18.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.|++.|.+|+|||++...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 351
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.0012 Score=41.21 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.++.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 468899999999999998764
No 352
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.75 E-value=0.0011 Score=41.20 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.++.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHC
Confidence 468899999999999998764
No 353
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.75 E-value=0.0013 Score=39.36 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-+++.|++|+|||+|+..+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999998875
No 354
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.74 E-value=0.0026 Score=40.70 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=22.2
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.....-|.|+|..++|||+|++++..
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 34567788999999999999999974
No 355
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.73 E-value=0.0012 Score=41.27 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-+.++|++|+|||||++.++.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHc
Confidence 468899999999999998764
No 356
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.72 E-value=0.00044 Score=39.05 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-|++.|.+|+||||++..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998764
No 357
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.72 E-value=0.0014 Score=38.81 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=19.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988764
No 358
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.72 E-value=0.0015 Score=35.21 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=20.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
...+++.|++|+|||.+++.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999887654
No 359
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.72 E-value=0.0013 Score=39.05 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=20.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 35789999999999999998874
No 360
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.0015 Score=37.45 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-+++.|++|+|||+|+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468889999999999887764
No 361
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.71 E-value=0.0013 Score=41.17 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.++++|++|+|||||++.+..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 468899999999999998764
No 362
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.71 E-value=0.0019 Score=40.09 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=21.3
Q ss_pred cCceeeeEEEEeCCCCCHHHHHHHH
Q psy2514 8 RGSIKGTVVIVGNGAVGKSSMIQRY 32 (71)
Q Consensus 8 ~~~~~~ki~v~G~~~vGKtsl~~~~ 32 (71)
+.....|++++|.+++|||+++.++
T Consensus 5 ~~~~~~k~lllG~~~sGKsT~~kq~ 29 (354)
T 2xtz_A 5 SGIHIRKLLLLGAGESGKSTIFKQI 29 (354)
T ss_dssp CCCEEEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCceeEEEECCCCCcHHHHHHHH
Confidence 4556789999999999999998854
No 363
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.71 E-value=0.0014 Score=40.32 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.3
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..--++++|++|+||||++..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999998763
No 364
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.71 E-value=0.00083 Score=37.03 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=15.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||++...+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998763
No 365
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.71 E-value=0.0014 Score=39.60 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=18.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.+.++|++|+|||+|++.+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999987764
No 366
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.70 E-value=0.0018 Score=37.89 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.7
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..+.|.+.|.+|+|||++...+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999988764
No 367
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.70 E-value=0.0016 Score=36.10 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.|++.|.+|+|||++...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987764
No 368
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.70 E-value=0.0015 Score=38.51 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||++...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998764
No 369
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.70 E-value=0.0016 Score=35.94 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=17.2
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy2514 14 TVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~ 33 (71)
-.+++|+.|+|||+++..+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 45788999999999998765
No 370
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.69 E-value=0.0014 Score=41.20 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=18.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
=.+.++|++|+|||+|++.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 3578999999999999987764
No 371
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.69 E-value=0.0014 Score=39.47 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--+++.|++|+|||++++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4588999999999999998775
No 372
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.68 E-value=0.0017 Score=40.19 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=18.0
Q ss_pred ccCCcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 41 YKKTIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 41 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
+.||+|... ..+.. +.+.++||||+|+
T Consensus 145 ~~~TiGi~~--~~~~~-~~v~l~iwDtaGQ 171 (340)
T 4fid_A 145 RTKTTGIHE--YDFVV-KDIPFHLIDVGGQ 171 (340)
T ss_dssp CCCCCSCEE--EEEES-SSCEEEEEECCSC
T ss_pred ccceeeeEE--EEEEe-eeeeeccccCCCc
Confidence 456677543 33333 4588999999996
No 373
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.68 E-value=0.00076 Score=36.88 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=18.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.++++|++|+|||+|+..+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999998765
No 374
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.67 E-value=0.0017 Score=38.13 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=19.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHH
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
...+.++|.+|+|||++++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999877
No 375
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.66 E-value=0.0022 Score=39.34 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=19.6
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
..+-+.++|.+|+||||++..+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999998775
No 376
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.66 E-value=0.0022 Score=37.23 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.2
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
.....+++.|.+||||||++.+++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 345788999999999999999997
No 377
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.64 E-value=0.0024 Score=38.54 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=20.3
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....+.++|.+|+||||++..+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999987764
No 378
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.63 E-value=0.0016 Score=40.77 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=18.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-+.++|++|+|||||++.+..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 468899999999999987764
No 379
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.63 E-value=0.0026 Score=37.36 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.1
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.....+++.|++|+|||+++..+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3446789999999999999998875
No 380
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.63 E-value=0.0019 Score=36.35 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=18.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-+.++|.+|+|||+++.+++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998774
No 381
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.63 E-value=0.0029 Score=38.38 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=19.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.--++++|.+|+||||++..++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35688999999999999997763
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.62 E-value=0.0024 Score=35.24 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...+++.|.+|+|||++...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999887764
No 383
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.60 E-value=0.00042 Score=42.34 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
-.++++|.+|+|||||++.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999988743
No 384
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.60 E-value=0.0019 Score=39.27 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998874
No 385
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.59 E-value=0.0013 Score=38.53 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=20.4
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....++++|.+|+|||++...+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998764
No 386
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.58 E-value=0.0019 Score=39.29 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.+++.|++|+|||+++..+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 387
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.58 E-value=0.00093 Score=40.75 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.+.++|++|+|||||++-+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4688999999999999986653
No 388
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.57 E-value=0.002 Score=37.47 Aligned_cols=20 Identities=15% Similarity=0.476 Sum_probs=17.1
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy2514 15 VVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 15 i~v~G~~~vGKtsl~~~~~~ 34 (71)
|+++|.+|+||++.+.+++.
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988764
No 389
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.55 E-value=0.0021 Score=38.05 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-++++|++|+|||+|+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578889999999999998874
No 390
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.55 E-value=0.0011 Score=41.18 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.++++|++|+|||||++.++.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCccHHHHHHHHHc
Confidence 578899999999999998764
No 391
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.55 E-value=0.002 Score=39.90 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=19.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.++++|.+|+||||+++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999998875
No 392
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.54 E-value=0.0032 Score=38.56 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.9
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
.....+.++|.+|+||||++..++
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHH
Confidence 445788999999999999999986
No 393
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.53 E-value=0.0024 Score=39.59 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=19.7
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHH
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRY 32 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~ 32 (71)
....+|++++|..++|||+++.++
T Consensus 29 ~~~~~klLlLG~geSGKST~~KQm 52 (353)
T 1cip_A 29 AAREVKLLLLGAGESGKSTIVKQM 52 (353)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHH
T ss_pred hcccceEEEEcCCCCCchhHHHHH
Confidence 345799999999999999998754
No 394
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.53 E-value=0.002 Score=38.61 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.+++.|++|+|||++++.+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 4589999999999999998774
No 395
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.53 E-value=0.0026 Score=39.17 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.0
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
....+|++++|..++|||+++.+..
T Consensus 4 ~~~~~klLlLG~geSGKSTi~KQmk 28 (327)
T 3ohm_A 4 ARRELKLLLLGTGESGKSTFIKQMR 28 (327)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred hcccceEEEEcCCCccHHHHHHHHH
Confidence 3457999999999999999998654
No 396
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.53 E-value=0.002 Score=39.95 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.++++|++|+||||+++.++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999997763
No 397
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.52 E-value=0.0023 Score=36.35 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..-++++|.+|+|||+++..+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999987653
No 398
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0021 Score=38.06 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-.++++|.+|+|||++.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999988764
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.52 E-value=0.0031 Score=35.84 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
+.|++.|.+|+|||++...+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998865
No 400
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.51 E-value=0.0023 Score=38.05 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..|++.|.+|+|||++..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998876
No 401
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.51 E-value=0.0026 Score=39.30 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=20.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.-++.++|++|+|||+|+..++..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999888764
No 402
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.51 E-value=0.0031 Score=37.42 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999987764
No 403
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.50 E-value=0.0022 Score=38.62 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..+++.|++|+|||++++.+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.50 E-value=0.0031 Score=37.69 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=20.2
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
..+.|++.|.+|+|||++...+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999998876
No 405
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.50 E-value=0.0018 Score=39.27 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=19.9
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-.+++.|++|+|||+++..+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998774
No 406
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.49 E-value=0.0025 Score=38.79 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--+++.|++|+|||+++..+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988875
No 407
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.48 E-value=0.0022 Score=39.89 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.++++|++|+||||++..++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999997764
No 408
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0023 Score=40.96 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=19.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-.++++|.+|+|||||++-++.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34688999999999999997764
No 409
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.47 E-value=0.0024 Score=39.77 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=19.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.--++++|.+|+||||++..++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 35688999999999999997663
No 410
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.47 E-value=0.0028 Score=40.32 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.3
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.-++.++|++|+|||+|+..++..
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347889999999999999887754
No 411
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.45 E-value=0.0024 Score=38.73 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy2514 15 VVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 15 i~v~G~~~vGKtsl~~~~~~~ 35 (71)
+++.|++|+|||+++..++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999987753
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.44 E-value=0.004 Score=36.17 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=20.5
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...-+++.|.+|+|||+++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346789999999999999998764
No 413
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.44 E-value=0.0033 Score=34.31 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.+++.|.+|+|||++...+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999988764
No 414
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.44 E-value=0.00023 Score=44.14 Aligned_cols=34 Identities=9% Similarity=-0.284 Sum_probs=20.1
Q ss_pred CCCCccCCcceeeEEEE---------EEeC-----CEEEEEEEcCCCC
Q psy2514 37 FTRDYKKTIGVKSSMIQ---------RYCR-----GTFTRDYKKTIGA 70 (71)
Q Consensus 37 f~~~~~~t~~~~~~~~~---------~~~~-----~~~~l~i~Dt~G~ 70 (71)
+.++|.||+++.+..+. +..+ +.+.++||||+|+
T Consensus 146 ~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQ 193 (354)
T 2xtz_A 146 SDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQ 193 (354)
T ss_dssp HSTTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEECCS
T ss_pred hcCCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECCCc
Confidence 45568888776543221 1122 4689999999996
No 415
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.43 E-value=0.0014 Score=43.11 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCcCC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRGTFT 38 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~~f~ 38 (71)
.++++|++|+|||||++.+..-.++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4899999999999999988765434
No 416
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.42 E-value=0.0027 Score=38.24 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=18.1
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy2514 15 VVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 15 i~v~G~~~vGKtsl~~~~~~ 34 (71)
+++.|++|+|||++++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999987764
No 417
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.42 E-value=0.002 Score=38.93 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=18.4
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy2514 15 VVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 15 i~v~G~~~vGKtsl~~~~~~ 34 (71)
+++.|++|+|||++++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998765
No 418
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.42 E-value=0.0028 Score=37.04 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCc
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRGT 36 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~~ 36 (71)
..+++.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 568999999999999999887543
No 419
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.41 E-value=0.0033 Score=36.99 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHH
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
.+.+++.|.+|+|||++...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999998776
No 420
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.41 E-value=0.0028 Score=38.97 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...+++.|++|+|||++++.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998774
No 421
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.40 E-value=0.0027 Score=38.39 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...+++.|++|+|||++++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999999998874
No 422
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.39 E-value=0.004 Score=40.51 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHH
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
.--++++|.+|+||||++..+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHH
Confidence 4568899999999999998766
No 423
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.38 E-value=0.0028 Score=38.54 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.+++.|++|+|||++++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 5689999999999999998875
No 424
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.37 E-value=0.0011 Score=41.19 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.++|++|+|||||++.++.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478899999999999998764
No 425
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.36 E-value=0.0025 Score=39.02 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.++++|.+|+|||+|++.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999987764
No 426
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.36 E-value=0.004 Score=39.37 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=21.3
Q ss_pred CceeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 9 GSIKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 9 ~~~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
....+|++++|...+|||+++.+..
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHHH
Confidence 3457999999999999999998643
No 427
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.33 E-value=0.0034 Score=35.97 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=17.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-+++.|++|+|||+|+.+++.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 467889999999999988763
No 428
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.32 E-value=0.0026 Score=40.53 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=20.1
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.-.++++|++|+|||+++..+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999877643
No 429
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.31 E-value=0.0029 Score=36.78 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
..++++|++|+|||+++..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999998754
No 430
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.29 E-value=0.0031 Score=39.66 Aligned_cols=23 Identities=39% Similarity=0.393 Sum_probs=19.7
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..-|+++|.+|+|||++.+++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35688899999999999999874
No 431
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.26 E-value=0.0037 Score=38.26 Aligned_cols=23 Identities=22% Similarity=0.536 Sum_probs=20.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...+++.|++|+|||++++.+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 432
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.25 E-value=0.0027 Score=38.59 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
-++++|..|+||||+++.+...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678899999999999998864
No 433
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.25 E-value=0.0038 Score=38.46 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=19.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
--+.++|++|+|||+|+..++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35778899999999999998853
No 434
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.24 E-value=0.0038 Score=40.76 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.+.++|++|+|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4689999999999999997754
No 435
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.23 E-value=0.004 Score=38.62 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-++++|++|+|||+|...++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998875
No 436
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.23 E-value=0.0038 Score=38.35 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...+++.|++|+|||++++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998874
No 437
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.23 E-value=0.0038 Score=38.37 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..+++.|++|+|||++++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999998774
No 438
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.23 E-value=0.0053 Score=37.83 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..++++|.+|+|||++...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988774
No 439
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.22 E-value=0.0045 Score=37.49 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=19.6
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...+++.|++|+|||.|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999887664
No 440
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.22 E-value=0.0059 Score=36.00 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=20.1
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
+-++++++.|.+|||||+++.+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 346899999999999999976654
No 441
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.22 E-value=0.0013 Score=38.48 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+++.|++|+|||+++..+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478899999999999998774
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.21 E-value=0.0045 Score=38.22 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
-++++|++|+|||+|...++..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4788999999999999998753
No 443
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.20 E-value=0.0017 Score=34.96 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=18.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..+++.|++|+|||++++.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4689999999999998876654
No 444
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.20 E-value=0.0054 Score=35.44 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.4
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....+.++|.+|+|||++...+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999887764
No 445
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.19 E-value=0.0044 Score=37.45 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=18.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHH
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
.-.++++|.+|+|||+++..++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468889999999999998765
No 446
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.19 E-value=0.0042 Score=39.14 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=17.9
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy2514 14 TVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~ 33 (71)
-+.++|++|+|||+|+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47788999999999999876
No 447
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.17 E-value=0.0022 Score=38.27 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..+++.|++|+|||+++..+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998764
No 448
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.17 E-value=0.0042 Score=39.35 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--++++|++|+||||+++.++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999998774
No 449
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.16 E-value=0.0064 Score=34.73 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.-+++.|++|+|||+++..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999988763
No 450
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.16 E-value=0.0045 Score=37.53 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 451
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.16 E-value=0.0043 Score=40.01 Aligned_cols=19 Identities=16% Similarity=0.476 Sum_probs=17.3
Q ss_pred eEEEEeCCCCCHHHHHHHH
Q psy2514 14 TVVIVGNGAVGKSSMIQRY 32 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~ 32 (71)
-++++|++|+|||+|+..+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5788999999999999996
No 452
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.15 E-value=0.0043 Score=39.49 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..+++.|++|+|||++++.+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998774
No 453
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.14 E-value=0.0025 Score=38.37 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.+++.|++|+|||++++.+..
T Consensus 47 ~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999999998775
No 454
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.14 E-value=0.0044 Score=38.36 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=20.2
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...+++.|++|+|||++++.++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 455
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.13 E-value=0.0044 Score=39.24 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--+++.|++|+|||+|++.+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999987764
No 456
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.13 E-value=0.0042 Score=40.35 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=18.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--++++|++|+|||++++.+..
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999987763
No 457
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.11 E-value=0.0048 Score=38.64 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=19.8
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..-.++++|++|+|||+++..+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345788999999999999987763
No 458
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.10 E-value=0.0051 Score=37.42 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~ 33 (71)
--++++|.+|+|||+++..++
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 468899999999999998776
No 459
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.10 E-value=0.005 Score=38.19 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-+++.|.+|+|||++...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4688999999999999988774
No 460
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.09 E-value=0.005 Score=39.91 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..++++|.+|+||||+++.++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3489999999999999998764
No 461
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.09 E-value=0.0052 Score=36.49 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.+++.|++|+|||+++..+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3899999999999999887753
No 462
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.08 E-value=0.005 Score=39.80 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~ 33 (71)
-.+.++|++|+|||||+..+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHh
Confidence 357889999999999998766
No 463
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.08 E-value=0.0058 Score=34.19 Aligned_cols=21 Identities=43% Similarity=0.499 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+.+.|.+|+|||++...+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999987764
No 464
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.07 E-value=0.0075 Score=39.23 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
=.+.++|++|+|||||++-+..-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999987653
No 465
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.005 Score=39.20 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--+++.|++|+|||+++..++.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998874
No 466
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.04 E-value=0.0065 Score=34.52 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.0
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy2514 15 VVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 15 i~v~G~~~vGKtsl~~~~~~~ 35 (71)
++++|.+++|||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
No 467
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.02 E-value=0.0056 Score=36.22 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 3899999999999999887643
No 468
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.02 E-value=0.0059 Score=36.18 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=18.6
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy2514 15 VVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 15 i~v~G~~~vGKtsl~~~~~~~ 35 (71)
+++.|++|+|||+++..+...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999887643
No 469
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.01 E-value=0.0092 Score=33.93 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=21.5
Q ss_pred ceeeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 10 SIKGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 10 ~~~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
...+.|.+.|.+|+|||++...+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578899999999999999887653
No 470
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.01 E-value=0.0022 Score=38.59 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.+++.|++|+|||++++.+..
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 499999999999999998875
No 471
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.99 E-value=0.027 Score=37.74 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.6
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
..-+++++|..+.|||||..+++
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL 34 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVL 34 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHH
T ss_pred HCeEEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999999876
No 472
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.99 E-value=0.0057 Score=39.36 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--+++.|++|+|||++++.+..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998874
No 473
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.96 E-value=0.0074 Score=39.39 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=19.5
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-.+.++|++|+|||||++-+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999987764
No 474
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.95 E-value=0.0078 Score=39.05 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=19.5
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
....|+++|.+|+||||++.+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999987
No 475
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.95 E-value=0.0092 Score=36.74 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-++++|++|+|||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3578899999999999998874
No 476
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.94 E-value=0.006 Score=39.33 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--+++.|.+|+|||+|+..+..
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEcCCCCCHHHHHHHHHh
Confidence 3578999999999999998864
No 477
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.94 E-value=0.0063 Score=38.53 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
..+++.|++|+|||+++..+...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999988753
No 478
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.91 E-value=0.0068 Score=33.01 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=16.2
Q ss_pred EEEEeCCCCCHHHHHHHHH
Q psy2514 15 VVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 15 i~v~G~~~vGKtsl~~~~~ 33 (71)
.+++|+.|+|||+++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4678999999999988754
No 479
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0068 Score=38.69 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=20.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-.+++.|++|+|||.++..++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 35789999999999999998774
No 480
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.88 E-value=0.0083 Score=36.84 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
.-+++.|++|+|||+++..+...
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 56899999999999999998864
No 481
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.88 E-value=0.0041 Score=38.11 Aligned_cols=21 Identities=14% Similarity=0.456 Sum_probs=17.4
Q ss_pred eEEE--EeCCCCCHHHHHHHHHh
Q psy2514 14 TVVI--VGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v--~G~~~vGKtsl~~~~~~ 34 (71)
-+++ .|++|+|||+++..+..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHH
Confidence 4555 69999999999998874
No 482
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.88 E-value=0.02 Score=36.24 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=15.6
Q ss_pred CcceeeEEEEEEeCCEEEEEEEcCCCC
Q psy2514 44 TIGVKSSMIQRYCRGTFTRDYKKTIGA 70 (71)
Q Consensus 44 t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 70 (71)
|+|+++ ..+..++ +.++||||+|+
T Consensus 204 TiGi~~--~~~~~~~-v~l~iwDtaGQ 227 (402)
T 1azs_C 204 TSGIFE--TKFQVDK-VNFHMFDVGGQ 227 (402)
T ss_dssp CCSEEE--EEEEETT-EEEEEEEECCS
T ss_pred eeeeEE--EEeecCC-ccceecccchh
Confidence 444433 2344444 89999999996
No 483
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0071 Score=38.63 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.0
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.--+++.|++|+|||.++..++.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35789999999999999998774
No 484
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.85 E-value=0.0075 Score=36.55 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-+++.|.+|+|||+|+.+++.
T Consensus 70 l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 477889999999999998874
No 485
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.81 E-value=0.0083 Score=38.68 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
-++++|++|+|||+|+..++..
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5788899999999999998753
No 486
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.80 E-value=0.0083 Score=40.06 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.2
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
....++++|++|+|||++++.+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHH
Confidence 345689999999999999987764
No 487
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.80 E-value=0.0079 Score=38.74 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-++++|++|+|||++++.+..
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998774
No 488
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.80 E-value=0.0061 Score=35.60 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=17.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHH
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
+-.+++.|++|+|||+++..++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 3458999999999998876655
No 489
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.79 E-value=0.011 Score=38.13 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
--+.++|.+|+|||+|+..+.+
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4578899999999999999885
No 490
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.79 E-value=0.0041 Score=40.70 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-.+.++|++|+|||||++-+..
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999987754
No 491
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.79 E-value=0.0083 Score=36.19 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.8
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
...+++.|++|+|||.+++.+..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHH
Confidence 35689999999999999988765
No 492
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.79 E-value=0.0063 Score=40.75 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=20.5
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
..-.+++.|++|+|||++++.+...
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999877643
No 493
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.78 E-value=0.0048 Score=40.46 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.4
Q ss_pred eeeEEEEeCCCCCHHHHHHHHHh
Q psy2514 12 KGTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 12 ~~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
.-.+.++|++|+|||||++-+..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35789999999999999987653
No 494
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.78 E-value=0.012 Score=36.76 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=19.2
Q ss_pred eeeeEEEEeCCCCCHHHHHHHHH
Q psy2514 11 IKGTVVIVGNGAVGKSSMIQRYC 33 (71)
Q Consensus 11 ~~~ki~v~G~~~vGKtsl~~~~~ 33 (71)
....++++|.+|+|||++...+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34679999999999999987554
No 495
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.77 E-value=0.0086 Score=37.28 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-+.+.|++|+|||+|+.+++.
T Consensus 63 i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999998774
No 496
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.011 Score=39.17 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
=.+.++|++|+|||||++-+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3578999999999999998765
No 497
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.76 E-value=0.0089 Score=37.97 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-+++.|++|+|||+|...+..
T Consensus 4 ~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHH
Confidence 478899999999999988874
No 498
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.75 E-value=0.008 Score=38.92 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy2514 14 TVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 14 ki~v~G~~~vGKtsl~~~~~~ 34 (71)
-++++|++|+|||+|++.+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998764
No 499
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.73 E-value=0.0068 Score=39.25 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCR 34 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~ 34 (71)
..+++.|++|+|||.+++.+..
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 4789999999999999998765
No 500
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.73 E-value=0.0085 Score=39.29 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy2514 13 GTVVIVGNGAVGKSSMIQRYCRG 35 (71)
Q Consensus 13 ~ki~v~G~~~vGKtsl~~~~~~~ 35 (71)
-.++++|++|+|||++++.+..-
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc
Confidence 36899999999999999988764
Done!