RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2514
(71 letters)
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 55.2 bits (134), Expect = 1e-11
Identities = 28/33 (84%), Positives = 32/33 (96%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V+VGNGAVGKSSMIQRYC+G FT+DYKKTIGV
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV 40
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 54.6 bits (132), Expect = 4e-11
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V+VG+G GK++ ++R+ G F + Y T+GV
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGV 50
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 53.0 bits (128), Expect = 1e-10
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V+I+G+ VGK+S++ RY +++ YK TIG
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA 43
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 53.0 bits (128), Expect = 1e-10
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V+I+G+ VGK+S++ +Y F+ YK TIG
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA 43
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V+++G+G VGKSS++ RY F TIGV
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV 42
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 52.5 bits (127), Expect = 2e-10
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G+GA GK+S+ + + TF + YK+TIG+
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGL 41
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 53.1 bits (128), Expect = 2e-10
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+ ++G+G VGK++ I R G F ++Y T+G
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA 46
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 51.3 bits (124), Expect = 4e-10
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
VV++G G VGK+S++ RYC F + T+G
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGA 41
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 51.9 bits (125), Expect = 4e-10
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V+ G+ AVGKSS + R C+ F + T+GV
Sbjct: 31 IVLAGDAAVGKSSFLMRLCKNEFRENISATLGV 63
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 50.7 bits (122), Expect = 9e-10
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V ++G+ VGKSS++ R+ + F + TIG
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA 58
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 50.2 bits (121), Expect = 9e-10
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V ++G+ VGKSS++ R+ +F + TIG
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGA 41
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 50.2 bits (121), Expect = 1e-09
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G+ GKSS++ R+ + F + TIG
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA 47
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 49.8 bits (120), Expect = 1e-09
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G AVGKSS++ R+ +G F + TIG
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 41
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 49.9 bits (120), Expect = 1e-09
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++I+G+ VGKSS++ R+ TF+ Y TIGV
Sbjct: 12 LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGV 44
Score = 34.8 bits (81), Expect = 6e-04
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 46 GV-KSSMIQRYCRGTFTRDYKKTIG 69
GV KSS++ R+ TF+ Y TIG
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIG 43
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 49.9 bits (120), Expect = 2e-09
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++I+GN +VGK+S + RY TFT + T+G+
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGI 58
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 49.8 bits (119), Expect = 2e-09
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G AVGKSS++ R+ F + + TIG
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGA 38
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 50.0 bits (120), Expect = 2e-09
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++I+GN +VGK+S + RY +FT + T+G+
Sbjct: 11 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGI 43
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 49.9 bits (120), Expect = 2e-09
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGK+ + R+C G F + TIGV
Sbjct: 23 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV 55
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 50.0 bits (120), Expect = 2e-09
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
VV++G+ VGKS+++ R+ R F + K TIGV
Sbjct: 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV 40
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 50.0 bits (120), Expect = 2e-09
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V +G +VGK+S+I R+ +F Y+ TIG+
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI 51
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 49.9 bits (120), Expect = 2e-09
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
VV++G+ VGKS+++ R+ R F + K TIGV
Sbjct: 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV 64
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 49.5 bits (119), Expect = 2e-09
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ F + TIG+
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI 38
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 49.5 bits (119), Expect = 2e-09
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+++GN GKS ++ ++ F D TIGV
Sbjct: 13 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGV 45
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 49.6 bits (119), Expect = 2e-09
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++GN VGK+ +++R+ +G F TIGV
Sbjct: 29 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV 61
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 49.6 bits (119), Expect = 2e-09
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 19 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV 51
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 49.6 bits (119), Expect = 2e-09
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V+VG+ +VGK+ ++QR+ G F+ TIGV
Sbjct: 32 LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGV 64
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 49.5 bits (119), Expect = 2e-09
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++GN +VGK+S + RY +FT + T+G+
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI 57
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 49.6 bits (119), Expect = 2e-09
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+++G+ GKS ++ ++ F +D TIGV
Sbjct: 28 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV 60
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 49.5 bits (119), Expect = 2e-09
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+I+G+ VGKS ++ ++ F D TIGV
Sbjct: 18 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGV 50
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 49.6 bits (119), Expect = 3e-09
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++GN VGKS ++ R+ T+T DY TIGV
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV 43
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 49.1 bits (118), Expect = 3e-09
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V +G +VGK+S+I R+ +F Y+ TIG+
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI 49
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 49.6 bits (119), Expect = 3e-09
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++ +G+ VGK++ + RY F + T+G+
Sbjct: 28 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI 60
Score = 34.6 bits (80), Expect = 8e-04
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 46 GV-KSSMIQRYCRGTFTRDYKKTIG 69
GV K++ + RY F + T+G
Sbjct: 35 GVGKTTFLYRYTDNKFNPKFITTVG 59
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 49.6 bits (119), Expect = 3e-09
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ T+T Y TIGV
Sbjct: 36 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV 68
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 49.7 bits (119), Expect = 3e-09
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++G+ VGKS+++ R+ + F D K TIGV
Sbjct: 16 IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV 48
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 49.5 bits (119), Expect = 3e-09
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V+I+G+ VGK+S+++R+ TF K T+GV
Sbjct: 29 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV 61
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 49.5 bits (119), Expect = 3e-09
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
VV++G VGK++++ R+ R F+ D + TIGV
Sbjct: 28 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV 60
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 49.6 bits (119), Expect = 3e-09
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ F + TIG+
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI 55
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 49.2 bits (118), Expect = 3e-09
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+ +G+ VGK+S++ +Y G F + T+G+
Sbjct: 14 FLALGDSGVGKTSVLYQYTDGKFNSKFITTVGI 46
Score = 34.1 bits (79), Expect = 0.001
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 46 GV-KSSMIQRYCRGTFTRDYKKTIG 69
GV K+S++ +Y G F + T+G
Sbjct: 21 GVGKTSVLYQYTDGKFNSKFITTVG 45
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 49.2 bits (118), Expect = 3e-09
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++I+G VGKSS++ R+ TF + TIGV
Sbjct: 18 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGV 50
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 48.7 bits (117), Expect = 4e-09
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGK+ ++ R+ F + TIG+
Sbjct: 11 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGI 43
Score = 33.7 bits (78), Expect = 0.001
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 46 GV-KSSMIQRYCRGTFTRDYKKTIG 69
GV K+ ++ R+ F + TIG
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIG 42
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 48.7 bits (117), Expect = 6e-09
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+I+G+ VGKS ++ ++ F + TIGV
Sbjct: 24 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 56
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 47.7 bits (114), Expect = 1e-08
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 15 VVIVGNGAVGKSSMIQRYCR--GTFTRDYKKTIGV 47
V +VG VGKS++I + F +DY T GV
Sbjct: 23 VAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGV 57
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 46.8 bits (112), Expect = 2e-08
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
V++VG+G VGKS++ ++ F DY+ T Y+K +
Sbjct: 21 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---------------SYRKKV 59
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 46.9 bits (112), Expect = 3e-08
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIG 46
++K +V+VG+GAVGK+ ++ + +G Y T+
Sbjct: 23 ALK--IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF 57
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 46.6 bits (111), Expect = 3e-08
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFT--RDYKKTIGV 47
++IVGN GK++++Q+ + + T+G+
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGI 39
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 46.3 bits (111), Expect = 3e-08
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
V++VG+G VGKS++ ++ F DY+ T Y+K +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---------------SYRKKV 45
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 46.1 bits (110), Expect = 4e-08
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 16/54 (29%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
+ ++G+ GKSS+I R+ G++ +KT YKK +
Sbjct: 10 LGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESE---------------QYKKEM 47
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 46.5 bits (111), Expect = 4e-08
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
V++VG+G VGKS++ ++ F DY+ T Y+K +
Sbjct: 17 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---------------SYRKKV 55
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 45.9 bits (110), Expect = 4e-08
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
+V+VG G VGKS++ + + F + TI Y+K +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDECDPTIED---------------SYRKQV 44
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 46.5 bits (111), Expect = 4e-08
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
VV+ G G VGKSS++ R+ +GTF Y TI Y++ I
Sbjct: 11 VVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIED---------------TYRQVI 49
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 46.0 bits (110), Expect = 5e-08
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
V + G G VGKSS++ R+ +GTF Y T+ Y++ I
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED---------------TYRQVI 44
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 46.1 bits (110), Expect = 5e-08
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
+V+VG G VGKS++ + + F +Y TI Y+K +
Sbjct: 24 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED---------------SYRKQV 62
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 45.9 bits (109), Expect = 5e-08
Identities = 9/46 (19%), Positives = 23/46 (50%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRY 55
++K +V+VG+ GK++++ + + F +Y T+ +
Sbjct: 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEI 50
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 45.7 bits (109), Expect = 6e-08
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
+V+VG VGKS++ + + F +Y TI Y+K +
Sbjct: 7 LVVVGADGVGKSALTIQLIQNHFVDEYDPTIED---------------SYRKQV 45
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 45.6 bits (109), Expect = 6e-08
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
+ I+G +VGKSS+ ++ G F Y TI + K I
Sbjct: 9 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN---------------TFTKLI 47
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 45.7 bits (109), Expect = 7e-08
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
VVI+G VGK+S+ ++ G F+ Y T+ Y K +
Sbjct: 27 VVILGYRCVGKTSLAHQFVEGEFSEGYDPTVEN---------------TYSKIV 65
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 45.2 bits (108), Expect = 7e-08
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
+V++G+G VGKS++ ++ +G F Y TI Y+K +
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED---------------SYRKQV 44
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 45.3 bits (108), Expect = 8e-08
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKS 49
V++VG VGKS++ + ++ +
Sbjct: 26 VMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDT 60
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 45.1 bits (107), Expect = 1e-07
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+K V+VG+GAVGK+S++ Y + +Y T
Sbjct: 20 GVK--CVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA 53
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 44.9 bits (107), Expect = 1e-07
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRD-YKKTIGV 47
V++VG+ VGK+ ++ R+ G F + T+G+
Sbjct: 13 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGI 46
Score = 29.8 bits (68), Expect = 0.038
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 46 GV-KSSMIQRYCRGTFTRD-YKKTIG 69
GV K+ ++ R+ G F + T+G
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVG 45
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding,
methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A
{Homo sapiens}
Length = 214
Score = 45.1 bits (107), Expect = 1e-07
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
S+K VV+VG+G GK+S++ + G F Y T+
Sbjct: 34 SVK--VVLVGDGGCGKTSLLMVFADGAFPESYTPTV 67
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 44.8 bits (107), Expect = 1e-07
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKS 49
V++VG VGKS++ + ++ +
Sbjct: 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDT 39
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 44.8 bits (106), Expect = 2e-07
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+IK V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 30 AIK--CVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 63
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 44.7 bits (106), Expect = 2e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 9 GSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+I+ +VIVG+GA GK+ ++ + + F Y T+
Sbjct: 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 58
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 44.9 bits (106), Expect = 2e-07
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
K +V+VG+ GK++M+Q + + Y T+
Sbjct: 27 RCK--LVLVGDVQCGKTAMLQVLAKDCYPETYVPTV 60
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 44.7 bits (106), Expect = 2e-07
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
K +V+VG+GA GK+ ++ + + F Y T+
Sbjct: 25 RKK--LVVVGDGACGKTCLLIVFSKDEFPEVYVPTV 58
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 44.5 bits (106), Expect = 2e-07
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 16/54 (29%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
V IVGN + GKS+++ RY GT+ ++ G +KK I
Sbjct: 23 VGIVGNLSSGKSALVHRYLTGTYVQEESPEGG----------------RFKKEI 60
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein;
HET: GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 44.4 bits (105), Expect = 2e-07
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V++G +VGKSS++ R + TF + TIG
Sbjct: 10 TVLLGESSVGKSSIVLRLTKDTFHENTNTTIGA 42
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 44.0 bits (105), Expect = 2e-07
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIG 46
VV++G+G VGKS++ ++ GTF Y TI
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE 37
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 44.3 bits (105), Expect = 2e-07
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIG 46
IK V VG+GAVGK+ ++ Y TF DY T+
Sbjct: 8 FIK--CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF 42
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 44.4 bits (105), Expect = 2e-07
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
+K V+VG+GAVGK+ ++ Y F +Y T+
Sbjct: 18 MLK--CVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 51
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 44.4 bits (105), Expect = 2e-07
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
++K +V+VG+ GK++++ + + F +Y T+
Sbjct: 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 61
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 44.1 bits (105), Expect = 3e-07
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
+ I G VGKS+++ R+ F +Y T+ Y+
Sbjct: 31 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES---------------TYRHQA 69
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 43.7 bits (104), Expect = 3e-07
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIG 46
+V+VG+G VGKS++ ++ + F DY TI
Sbjct: 21 LVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE 52
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 43.7 bits (104), Expect = 3e-07
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 15/54 (27%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
+ I+G GKS++ ++ F +Y + Y
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLED---------------TYSSEE 62
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 43.9 bits (104), Expect = 4e-07
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
IK V VG+GAVGK+ M+ Y F DY T+
Sbjct: 9 FIK--CVTVGDGAVGKTCMLICYTSNKFPTDYIPTV 42
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 42.9 bits (102), Expect = 6e-07
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V+VG G VGKS++ ++ + F DY TI
Sbjct: 12 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIED 44
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 42.1 bits (99), Expect = 1e-06
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDY 41
+IK V+VG+GAVGK+ ++ Y F +Y
Sbjct: 5 AIK--CVVVGDGAVGKTCLLISYTTNAFPGEY 34
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 42.3 bits (99), Expect = 2e-06
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
V ++G+G GK+S++++ TF +T G+
Sbjct: 44 VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGL 76
Score = 28.8 bits (64), Expect = 0.098
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 48 KSSMIQRYCRGTFTRDYKKTIGA 70
K+S++++ TF +T G
Sbjct: 54 KTSLLKQLIGETFDPKESQTHGL 76
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 38.7 bits (91), Expect = 2e-05
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
VV++G+ VGK+S+ + +++
Sbjct: 7 VVLLGDPGVGKTSLASLFAGKQERDLHEQLG 37
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 38.2 bits (90), Expect = 3e-05
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 16/54 (29%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
V+++G VGKS++ + + G + G Y ++I
Sbjct: 5 VLLLGAPGVGKSALARIFG-GVEDGPEAEAAGH---------------TYDRSI 42
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 35.7 bits (83), Expect = 3e-04
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKK-TIGVKS 49
VV++G VGKS++ + + D +G +
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDT 44
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 34.6 bits (80), Expect = 0.001
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 15 VVIVGNGAVGKSSMIQRYCR--GTFTRDYKKTI 45
VV++G VGKS++ + + D +
Sbjct: 40 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG 72
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.5 bits (74), Expect = 0.005
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 27 SMIQRYCRGTFTR-DYKKTIGVKSSM--IQRYCRGTFTR 62
Q CRG R + K S+ IQ R
Sbjct: 796 IAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNV 834
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 31.5 bits (72), Expect = 0.013
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 27 SMIQRYCRGTFTR-DYKKTIGVKSS--MIQRYCRGTFTR 62
SM Q + RG R YKK + +IQR R
Sbjct: 783 SMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVL 821
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.2 bits (71), Expect = 0.014
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 28 MIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTR 62
IQ+ RG R + + IQRY RG R
Sbjct: 773 RIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQAR 807
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.060
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 27/76 (35%)
Query: 4 LWVLRGSIK-----GTVVIVGNGAVGKSSMIQRYCRGTFTRDYKK-----------TIGV 47
LR ++ V+I G GK+ + C YK +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-----LSYKVQCKMDFKIFWLNLKN 191
Query: 48 KSS------MIQRYCR 57
+S M+Q+
Sbjct: 192 CNSPETVLEMLQKLLY 207
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 29.2 bits (65), Expect = 0.069
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 3 NLWVLRGSIKGTVVIVGNGAVGKS 26
N + K VI+G G VG++
Sbjct: 4 NHNTKKILFKNRFVILGFGCVGQA 27
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.5 bits (63), Expect = 0.12
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 5 WVLRGSIKGTV-VIVGNGAVGKSSM 28
+VL + GTV +V G GKS +
Sbjct: 22 YVLPNMVAGTVGALVSPGGAGKSML 46
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 28.6 bits (63), Expect = 0.15
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFT 38
K V++ G + GK+S IQ
Sbjct: 65 KPMVLVAGQYSTGKTSFIQYLLEQEVP 91
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 28.0 bits (62), Expect = 0.18
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 13 GTVVIVGNGAVGKSSMIQRYCRGT---FTRDYKKTIG 46
GT G +GKS + R+ R + F D+ +
Sbjct: 29 GTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLS 65
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 27.7 bits (61), Expect = 0.29
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRY---CRGTFTRDYKKTIGVKSSMIQ 53
+ ++++G GKSSM TR TI V+ S ++
Sbjct: 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR 47
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 27.2 bits (60), Expect = 0.33
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIG 46
G V +VG VGKS+ I R + T
Sbjct: 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS 196
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL
conjugation, Ca2+ regulation, myosin, calcium, IQ
motif, acetylation; 2.5A {Mus musculus}
Length = 58
Score = 26.0 bits (58), Expect = 0.42
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 28 MIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTR 62
IQ+ RG R + + +QRY RG R
Sbjct: 10 RIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQAR 44
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 26.5 bits (59), Expect = 0.64
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 7 LRGSIKG-TVVIVGNGAVGKSSMIQR 31
L ++ G + G VGKSS++
Sbjct: 209 LEEALTGRISIFAGQSGVGKSSLLNA 234
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 26.4 bits (59), Expect = 0.73
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 7 LRGSIKG-TVVIVGNGAVGKSSMIQR 31
L ++G ++ G VGKSS++ R
Sbjct: 159 LVDYLEGFICILAGPSGVGKSSILSR 184
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 26.4 bits (59), Expect = 0.81
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 7 LRGSIKG-TVVIVGNGAVGKSSMIQR 31
+ + T V G VGKSS++
Sbjct: 167 IIPHFQDKTTVFAGQSGVGKSSLLNA 192
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 26.2 bits (58), Expect = 0.93
Identities = 3/45 (6%), Positives = 7/45 (15%), Gaps = 9/45 (20%)
Query: 27 SMIQRYCRGTFTRDYKKT---------IGVKSSMIQRYCRGTFTR 62
+ R + G +Q +
Sbjct: 767 TKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEY 811
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 25.9 bits (56), Expect = 1.0
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 14 TVVIVGNGAVGKSSMIQRYCRGTF----TRDYKKTIGVKSSMIQ 53
++ VG +GKS+++ F + + ++S+
Sbjct: 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYD 87
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 26.0 bits (58), Expect = 1.0
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 7 LRGSIKG-TVVIVGNGAVGKSSMIQR 31
L+ +KG + G VGKSS++
Sbjct: 163 LKEYLKGKISTMAGLSGVGKSSLLNA 188
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 25.8 bits (57), Expect = 1.2
Identities = 2/37 (5%), Positives = 9/37 (24%), Gaps = 3/37 (8%)
Query: 29 IQRYCRGTFTR-DYKKTIGVKSSM--IQRYCRGTFTR 62
+ + ++ S+ +Q +
Sbjct: 767 ANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEY 803
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 25.2 bits (56), Expect = 2.1
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 6 VLRGSIK--GTVVIVGNGAVG 24
+IK TV ++G G VG
Sbjct: 159 AELANIKLGDTVCVIGIGPVG 179
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 25.1 bits (54), Expect = 2.1
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 14 TVVIVGNGAVGKSSMIQRYCRGTFTRD 40
+ + G +GKS+ +
Sbjct: 9 RIYLDGVYGIGKSTTGRVMASAASGGS 35
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 25.0 bits (54), Expect = 2.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 15 VVIVGNGAVGKSSMI 29
V + G GKSS I
Sbjct: 72 VAVTGETGSGKSSFI 86
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 24.8 bits (55), Expect = 2.4
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 12 KGTVVIVGNGAVG 24
VVIVGNG G
Sbjct: 8 GSKVVIVGNGPGG 20
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 24.6 bits (54), Expect = 2.7
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 2 LNLWVLRGSIKGTVVIVGNGAVGKSSMIQ 30
+N + RG + + + G+ GK+S++
Sbjct: 57 INFKIERGQL---LAVAGSTGAGKTSLLM 82
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding;
3.50A {Homo sapiens} PDB: 3zys_B
Length = 608
Score = 24.6 bits (53), Expect = 2.9
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 14 TVVIVGNGAVGKSSMIQRYCRGTFTRD 40
+ ++G+ + GKSS+++ R
Sbjct: 47 AIAVIGDQSSGKSSVLEALSGVALPRG 73
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 24.4 bits (54), Expect = 3.0
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 2 LNLWVLRGSIKGTVVIVGNGAVGKSSMIQ 30
+ + G++ V +VG GKSS++
Sbjct: 24 ITFSIPEGAL---VAVVGQVGCGKSSLLS 49
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 24.4 bits (54), Expect = 3.0
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 10 SIKGTVVIVGNGAVG 24
S + +VI+G G G
Sbjct: 2 SERAPLVIIGTGLAG 16
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 24.5 bits (54), Expect = 3.4
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 12 KGTVVIVGNGAVG 24
++I+G G G
Sbjct: 9 STKILILGAGPAG 21
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 24.5 bits (54), Expect = 3.6
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 6 VLRGSIKG-TVVIVGNGAVG 24
VL G I G +V+I G G +G
Sbjct: 161 VLAGPISGKSVLITGAGPLG 180
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 24.3 bits (52), Expect = 3.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 9 GSIKGTVVIVGNGAVGKSSMIQR 31
G+ TV+I GN GK++ +
Sbjct: 17 GTQPFTVLIEGNIGSGKTTYLNH 39
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 24.5 bits (53), Expect = 3.7
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 14 TVVIVGNGAVGKSSMI 29
T++++G G VGKSS +
Sbjct: 41 TILVMGKGGVGKSSTV 56
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA
maturation, GTP-binding domain, maturation enzyme,
oxidoreductase; 2.99A {Thermotoga neapolitana}
Length = 423
Score = 24.2 bits (53), Expect = 3.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 10 SIKGTVVIVGNGAVGKSSMI 29
+ +V+ G VGKSS +
Sbjct: 32 GFRRYIVVAGRRNVGKSSFM 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 24.2 bits (53), Expect = 4.0
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 14 TVVIVGNGAVGKSSMI------QRYCRGTFTRDYKKTIGVKSSMIQRYCRGT 59
+ I+G +GK++ G+ T + K+ + K I GT
Sbjct: 296 IIGILGPNGIGKTTFARILVGEITADEGSVTPE-KQILSYKPQRIFPNYDGT 346
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 24.2 bits (52), Expect = 4.5
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 15 VVIVGNGAVGKSSMIQRY---CRGTFTRDYKKTIGVKSSMIQ 53
++++G GKSS+ + T + T + I
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDIS 64
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 24.0 bits (52), Expect = 4.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 14 TVVIVGNGAVGKSSMI 29
TV+++G G VGKSS +
Sbjct: 38 TVLVLGKGGVGKSSTV 53
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 24.0 bits (52), Expect = 4.7
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 14 TVVIVGNGAVGKSSMIQR 31
T+++ G VGKSS +
Sbjct: 31 TIILSGAPNVGKSSFMNI 48
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 24.2 bits (53), Expect = 4.7
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 13 GTVVIVGNGAVG 24
V I G G VG
Sbjct: 187 SHVYIAGAGPVG 198
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 23.8 bits (52), Expect = 5.2
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 14 TVVIVGNGAVG 24
TV + G G VG
Sbjct: 188 TVYVAGAGPVG 198
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 23.8 bits (52), Expect = 5.3
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 6 VLRGSIK--GTVVIVGNGAVG 24
VLR V I+G G +G
Sbjct: 486 VLRDKAPVGNKVAIIGCGGIG 506
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 23.7 bits (52), Expect = 5.5
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 2 LNLWVLRGSIKGTVVIVGNGAVGKSSMIQ 30
+N + RG + + + G+ GK+S++
Sbjct: 27 INFKIERGQL---LAVAGSTGAGKTSLLM 52
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 63
Score = 23.1 bits (50), Expect = 5.6
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 27 SMIQRYCRGTFTR-DYKKTIGVKSSM--IQRYCR 57
++Q RG R +++ S IQ R
Sbjct: 8 KVVQAAARGWVERKHFRQAREKSVSARIIQDNIR 41
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 23.8 bits (51), Expect = 5.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 12 KGTVVIVGNGAVGKSSMI 29
+G +I+G GKSS++
Sbjct: 23 EGINLIIGQNGSGKSSLL 40
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 23.4 bits (51), Expect = 6.9
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 4/18 (22%)
Query: 14 TVVIVG--NGAVGKSSMI 29
T++ G N VGKS++I
Sbjct: 3 TIIFAGRSN--VGKSTLI 18
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A
3tuy_A* 1scm_A
Length = 64
Score = 22.4 bits (48), Expect = 9.1
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 27 SMIQRYCRGTFTR-DYKKTIGVKSSM--IQRYCRG 58
SM Q + RG R YKK + + IQR R
Sbjct: 10 SMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRK 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.419
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,070,815
Number of extensions: 50009
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 136
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)