RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2514
(71 letters)
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 50.5 bits (119), Expect = 4e-10
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGT 59
V+I+G+ VGK+S++ +Y F+ YK TIG +
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDR 49
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 49.6 bits (117), Expect = 1e-09
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
+IK V+VG+GAVGK+ ++ Y F +Y T+ ++
Sbjct: 3 TIK--CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG 47
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 48.0 bits (113), Expect = 3e-09
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
VV++G+G VGKS++ ++ GTF Y TI + T G
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 47.7 bits (112), Expect = 4e-09
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
I+ +VIVG+GA GK+ ++ + F Y T+
Sbjct: 1 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVD 46
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 47.3 bits (111), Expect = 6e-09
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKT 67
+IK V+VG+GAVGK+ ++ Y F +Y T+ S T
Sbjct: 5 AIK--CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 60
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 46.5 bits (109), Expect = 1e-08
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
V++VG+G VGKS++ ++ F DY+ T D T G
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 61
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 46.6 bits (109), Expect = 1e-08
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
+V+VG G VGKS++ ++ + F DY TI + I D T G
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 46.1 bits (108), Expect = 1e-08
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
+V+VG G VGKS++ + + F +Y TI T D T G
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 46.6 bits (109), Expect = 1e-08
Identities = 9/54 (16%), Positives = 22/54 (40%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDY 64
+K +V+VG+ GK++++ + + F +Y T+ +
Sbjct: 1 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 54
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 46.1 bits (108), Expect = 1e-08
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG 58
+V +G +VGK+S+I R+ +F Y+ TIG+ Y
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 46
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 46.1 bits (108), Expect = 2e-08
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
+V++G+G VGKS++ ++ +G F Y TI + T G
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 46.1 bits (108), Expect = 2e-08
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
V + G G VGKSS++ R+ +GTF Y T+ + + T T G
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 59
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 46.0 bits (108), Expect = 2e-08
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++GN VGKS ++ R+ T+T DY TIGV
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV 41
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 45.8 bits (107), Expect = 2e-08
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDY 64
V+I+G+ VGK+S++ RY +++ YK TIG + G
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 54
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 45.4 bits (106), Expect = 3e-08
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
+V+VG G VGKS++ ++ + F DY TI + D T G
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAG 62
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 45.3 bits (106), Expect = 3e-08
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
V+++G+G VGKSS++ RY F TIGV+ G F
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 45.0 bits (105), Expect = 4e-08
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFT 61
+ I G VGKS+++ R+ F +Y T+ +
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS 51
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 45.0 bits (105), Expect = 4e-08
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
+V+VG+G VGKS++ ++ + F DY TI D T G
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 61
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 44.6 bits (104), Expect = 6e-08
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDY 64
V+VG+GAVGK+ ++ Y F +Y T+ ++ +
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGL 61
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 44.7 bits (104), Expect = 7e-08
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
SIK +V++G AVGKSS++ R+ F + + TIG +
Sbjct: 3 SIK--LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI 47
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 44.0 bits (103), Expect = 8e-08
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGK+ ++ R+ F + TIG+
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGI 41
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 44.1 bits (103), Expect = 9e-08
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++ +G+ VGK++ + RY F + T+G+
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI 40
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 43.9 bits (102), Expect = 1e-07
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
++++G+ VGK+ + R+C G F + TIGV
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI 46
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 43.6 bits (101), Expect = 1e-07
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
+ I+G +VGKSS+ ++ G F Y TI + + + T G
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 43.2 bits (101), Expect = 2e-07
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
++++G+ VGKS ++ R+ F + TIG+
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI 37
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 43.3 bits (101), Expect = 2e-07
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTR 62
VV++G+ VGKS+++ R+ R F + K TIGV+ + G +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 54
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 43.1 bits (100), Expect = 2e-07
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
+ +VG GK++ + G F D T+G I +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN 46
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 43.2 bits (100), Expect = 2e-07
Identities = 32/60 (53%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
+IK +V+VGNGAVGKSSMIQRYC+G FT+DYKKTIGV Q R
Sbjct: 2 AIK--MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 59
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 43.3 bits (101), Expect = 2e-07
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIG 46
++I+G VGKSS++ R+ TF + TIG
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIG 41
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 43.1 bits (100), Expect = 2e-07
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 11 IKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
++ +V+VG+G GK++ ++R+ G F + Y T+
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 36
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 42.9 bits (100), Expect = 2e-07
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI-GVKSSMIQRYCRGTFTRDYKKTIG 69
+I+G+ VGKS ++ ++ F + TI + + T G
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 42.7 bits (99), Expect = 3e-07
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR 57
V ++G+ VGKSS++ R+ +F + TIG +
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ 49
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 42.5 bits (99), Expect = 4e-07
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGV 47
+V++GN VGK+ +++R+ +G F TIGV
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV 40
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 42.6 bits (99), Expect = 4e-07
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
++++G G GKS+ I++ T G+
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQS 44
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 42.2 bits (98), Expect = 4e-07
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDY 64
VV++G G VGK+S++ RYC F + T+G + G
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLA 55
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 41.9 bits (97), Expect = 5e-07
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCR 57
+V++G AVGKSS++ R+ +G F + TIG
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD 51
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 41.4 bits (96), Expect = 1e-06
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
++I+GN +VGK+S + RY +FT + T+G+ + Y
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR 49
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 41.0 bits (95), Expect = 1e-06
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRD 63
++++G G GKS+ +++ T G+ + D
Sbjct: 5 ILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVD 50
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 41.0 bits (95), Expect = 1e-06
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRG 58
+I+G+ VGKS ++ ++ F D TIGV+ G
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG 50
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 40.4 bits (93), Expect = 2e-06
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKT 44
+ ++G+ GKSS+I R+ G++ K
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGSYQVLEKTE 37
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 39.5 bits (91), Expect = 5e-06
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYK 42
+++GN GKS ++ ++ F D
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSN 35
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 39.4 bits (90), Expect = 5e-06
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
VV++G VGKS++ + + D + + + +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLM 47
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 39.2 bits (90), Expect = 8e-06
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
V+ VG GK+ + R G + D + +I S++ +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNN 43
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 38.7 bits (89), Expect = 8e-06
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRD-YKKTIGVKSSMIQRYCRG 58
V++VG+ VGK+ ++ R+ G F + T+G+ G
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG 53
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 38.6 bits (89), Expect = 1e-05
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQ 53
++++G G GKS+++++ T G+ + Q
Sbjct: 9 LLLLGAGESGKSTIVKQMRILHVV----LTSGIFETKFQ 43
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 37.6 bits (86), Expect = 2e-05
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYK 65
++++G G GKS+++++ G+ + D
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIHEA-----GTGIVETHFTFKDLHFKMFDVG 50
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 37.3 bits (85), Expect = 3e-05
Identities = 9/58 (15%), Positives = 20/58 (34%)
Query: 3 NLWVLRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTF 60
+W L + V+IVG GK++++ ++ ++ R
Sbjct: 6 RIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLM 63
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 37.0 bits (84), Expect = 4e-05
Identities = 5/36 (13%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 13 GTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVK 48
G ++ +G GK++++ + T
Sbjct: 1 GKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT 35
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 36.9 bits (84), Expect = 4e-05
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDY 41
+++VG A GK++++ + G
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTI 29
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 35.8 bits (81), Expect = 1e-04
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFT 38
++I+G GK++++ R G
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVV 31
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 35.5 bits (80), Expect = 1e-04
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
V+++G VGKS++ + + + + I
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDG 45
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 35.0 bits (79), Expect = 2e-04
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 10 SIKGTVVIVGNGAVGKSSMIQRYCRGTFT 38
S + +++I G GK+S++ +
Sbjct: 1 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR 29
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 34.7 bits (78), Expect = 3e-04
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDY 41
G +V +G GK++++ +
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHV 42
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 34.3 bits (77), Expect = 4e-04
Identities = 3/24 (12%), Positives = 14/24 (58%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFT 38
++++G GK+++++++
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVD 28
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 33.8 bits (76), Expect = 6e-04
Identities = 6/54 (11%), Positives = 22/54 (40%)
Query: 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTF 60
+ G+ + ++++G A GK++++ + G ++ + +
Sbjct: 7 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV 60
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 33.0 bits (74), Expect = 0.001
Identities = 3/30 (10%), Positives = 14/30 (46%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKT 44
++++G GK++++++ +
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQ 48
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 33.0 bits (74), Expect = 0.001
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQ 53
++I+G GK++++ R G K TIG +
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLS 57
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 32.4 bits (73), Expect = 0.002
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 28 MIQRYCRGTFTR-DYKKTIGVKSSM--IQRYCRGTFTR 62
Q CRG R +Y+ + + S+ IQ R
Sbjct: 740 ATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNV 777
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 30.5 bits (67), Expect = 0.010
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 13 GTVVIVGNGAVGKSSMIQRYCR 34
G V IVG VGKS+++
Sbjct: 6 GFVAIVGKPNVGKSTLLNNLLG 27
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 30.1 bits (66), Expect = 0.011
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 14 TVVIVGNGAVGKSSMIQRYCR 34
TV+IVG VGKS++ + +
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVK 22
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 29.7 bits (65), Expect = 0.018
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 13 GTVVIVGNGAVGKSSMIQR 31
T++ G VGKS++I R
Sbjct: 1 ATIIFAGRSNVGKSTLIYR 19
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 29.3 bits (64), Expect = 0.026
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 14 TVVIVGNGAVGKSSMIQRYCR 34
VVI G GKSS++
Sbjct: 3 KVVIAGRPNAGKSSLLNALAG 23
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 28.5 bits (62), Expect = 0.042
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 13 GTVVIVGNGAVGKSSMIQR 31
G + IVG VGKS+++ +
Sbjct: 6 GFIAIVGRPNVGKSTLLNK 24
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 28.2 bits (61), Expect = 0.053
Identities = 9/46 (19%), Positives = 11/46 (23%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTF 60
V G GKSS + KT G +
Sbjct: 19 VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK 64
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 28.5 bits (63), Expect = 0.054
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 27 SMIQRYCRGTFTR-DYKKTIGVKSSM--IQRYCRGTFT-RDYKK 66
SM Q + RG R YKK + + IQR R R+++
Sbjct: 735 SMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQW 778
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.7 bits (60), Expect = 0.090
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 5 WVLRGSIKGTVVIV-GNGAVGKSSMI 29
+VL + GTV + G GKS +
Sbjct: 21 YVLPNMVAGTVGALVSPGGAGKSMLA 46
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.8 bits (60), Expect = 0.10
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 7 LRGSIKGTVVIVGNGAVGKSSMIQRYCR 34
L+G +++G GKSS+I+
Sbjct: 24 LKGLRAPITLVLGLRRTGKSSIIKIGIN 51
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 27.3 bits (60), Expect = 0.13
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 6 VLRGSIKGTVVIVGNGAVGKSSMIQRYCR--------GTFTRDYKKTIGVKSSMIQRYCR 57
VL K ++VG VGK+++ + ++ + S + R
Sbjct: 33 VLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 92
Query: 58 GTFTRDYKKTI 68
G F + +K +
Sbjct: 93 GDFEKRFKALL 103
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.1 bits (59), Expect = 0.16
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 14 TVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTI 68
T++++G G VGKSS + + + +I S R + +R
Sbjct: 34 TILVMGKGGVGKSSTVN-----SIIGERVVSISPFQSEGPRPVMVSRSRAGFTLN 83
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 26.6 bits (57), Expect = 0.20
Identities = 9/56 (16%), Positives = 13/56 (23%)
Query: 14 TVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
+ + G VGKSS I G ++ G
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYG 80
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 26.6 bits (57), Expect = 0.22
Identities = 10/56 (17%), Positives = 15/56 (26%)
Query: 14 TVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKKTIG 69
V IVG VGKS++ + + + T G
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 65
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 26.2 bits (56), Expect = 0.32
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 15 VVIVGNGAVGKSSMIQRYCR 34
V +VG GKSS++ R
Sbjct: 4 VGLVGYPNAGKSSLLAAMTR 23
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.1 bits (56), Expect = 0.37
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 15 VVIVGNGAVGKSSMIQRYCR 34
+VIVG VGKS+++ R
Sbjct: 3 MVIVGKPNVGKSTLLNRLLN 22
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 26.0 bits (56), Expect = 0.39
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 14 TVVIVGNGAVGKSSMIQR 31
V +VG +VGKS+++
Sbjct: 3 DVGLVGFPSVGKSTLLSV 20
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 25.6 bits (55), Expect = 0.48
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 14 TVVIVGNGAVGKSSMIQRYCRGTFTRDYK---KTIGVKSSMIQRYCRGTFTR 62
V I G VGKS+ I +K + S+ G TR
Sbjct: 53 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 104
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 25.1 bits (53), Expect = 0.82
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
+G +I+G GKSS++ G + K I
Sbjct: 23 EGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGAR 67
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 24.8 bits (53), Expect = 0.91
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTF 37
+ +VG + GKSS+++ + F
Sbjct: 29 IAVVGGQSAGKSSVLENFVGRDF 51
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 24.7 bits (53), Expect = 1.2
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 15 VVIVGNGAVGKSSMIQR 31
V + G GKSS I
Sbjct: 59 VAVTGETGSGKSSFINT 75
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 24.4 bits (52), Expect = 1.3
Identities = 7/16 (43%), Positives = 14/16 (87%)
Query: 15 VVIVGNGAVGKSSMIQ 30
+V+VG+ + GKSS+++
Sbjct: 27 IVVVGSQSSGKSSVLE 42
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 24.0 bits (51), Expect = 2.1
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 14 TVVIVGNGAVGKSSMIQRYCR 34
+ + G GKS+ ++ +
Sbjct: 56 RLGVTGTPGAGKSTFLEAFGM 76
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 23.9 bits (51), Expect = 2.2
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 15 VVIVGNGAVGKSSMIQRYC 33
V G VGKSS++
Sbjct: 100 TVFAGQSGVGKSSLLNAIS 118
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 23.6 bits (50), Expect = 2.4
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 13 GTVVIVGNGAVGKSSMIQRYCR 34
+ + G GKS + +
Sbjct: 45 FFLFLHGRAGSGKSVIASQALS 66
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 23.6 bits (49), Expect = 2.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 12 KGTVVIVGNGAVGKSSMI 29
+G +I+G GKSS++
Sbjct: 23 EGINLIIGQNGSGKSSLL 40
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 23.5 bits (50), Expect = 2.8
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 1 MLNLWVLRGSIKGTVVIVGNGAVGKSSMIQRYC 33
L+G I + G VGKSS++
Sbjct: 87 EELKEYLKGKI---STMAGLSGVGKSSLLNAIN 116
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 23.4 bits (50), Expect = 3.0
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 14 TVVIVGNGAVGKSSMIQR 31
+ + G +GKS+ +
Sbjct: 8 RIYLDGVYGIGKSTTGRV 25
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 23.5 bits (49), Expect = 3.1
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 12 KGTVVIVGNGAVGKSSMIQ 30
+ + G GKS+ +
Sbjct: 24 ELVTTLSGGNGAGKSTTMA 42
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 23.1 bits (48), Expect = 3.5
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 15 VVIVGNGAVGKSSMIQR--YCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYK 65
+ I G+ GK+++ + T D + I +Y+
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR 60
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 23.0 bits (49), Expect = 3.6
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 15 VVIVGNGAVGKSSMIQR 31
+ + G +GK++ +
Sbjct: 8 IYLDGAYGIGKTTAAEE 24
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 23.3 bits (49), Expect = 3.9
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 15 VVIVGNGAVGKSSMIQRYCRGTFTRDYKKTI 45
++ GKSS+IQ + D + ++
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSV 35
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 23.0 bits (49), Expect = 3.9
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 15 VVIVGNGAVGKSSMIQR 31
V I G +GK++ Q
Sbjct: 7 VYIDGPHGMGKTTTTQL 23
>d1ecfa1 c.61.1.1 (A:250-492) Glutamine PRPP amidotransferase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 243
Score = 23.1 bits (49), Expect = 4.0
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 40 DYKKTIGVKSSMIQRYCRGTFTRDY 64
D + ++ IQ++ F Y
Sbjct: 192 DLIDAVRAENPDIQQFECSVFNGVY 216
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor
(AIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 22.7 bits (47), Expect = 4.8
Identities = 2/11 (18%), Positives = 5/11 (45%)
Query: 14 TVVIVGNGAVG 24
+++G G
Sbjct: 6 PFLLIGGGTAA 16
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha,
N-terminal (G) domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 224
Score = 22.9 bits (48), Expect = 5.4
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 15 VVIVGNGAVGKSSMIQR---YCRGTFTRDYKKTIGVKSSMIQRYCRGTFTRDYKK 66
++++G+ GKS+++ R + K+ + + + F D K
Sbjct: 6 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 60
>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin
reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 183
Score = 22.4 bits (46), Expect = 6.1
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 10 SIKGTVVIVGNGAVG 24
++K VV++G G
Sbjct: 1 ALKAPVVVLGAGLAS 15
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 22.5 bits (47), Expect = 6.4
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 14 TVVIVGNGAVGKSS 27
I G G +GKS+
Sbjct: 4 QCAIYGKGGIGKST 17
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 22.5 bits (47), Expect = 7.1
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 12 KGTVVIVGNGAVGKSSMIQRYCR 34
+ T+V++G VG+ +
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLIT 25
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 22.0 bits (45), Expect = 8.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 15 VVIVGNGAVG 24
VVIVG G G
Sbjct: 6 VVIVGTGLAG 15
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 22.2 bits (46), Expect = 8.7
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 15 VVIVGNGAVGKSSMIQRYCR 34
+VI G GKS+++++
Sbjct: 4 IVISGPSGTGKSTLLKKLFA 23
>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 195
Score = 22.1 bits (46), Expect = 9.0
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 6 VLRGSIK--GTVVIVGNGAVGKSSMIQRYCRGTFTRDYKKTIGVKSSMIQRYC 56
+ + TV + G G VG ++ G + + +
Sbjct: 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG 70
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 22.1 bits (47), Expect = 9.6
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 2 LNLWVLRGSIKGTVVIVGNGAVGKSSMIQRYCR 34
L ++ K +V G GKS +
Sbjct: 43 LKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH 75
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 22.2 bits (46), Expect = 9.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 14 TVVIVGNGAVGKSS 27
V I G G +GKS+
Sbjct: 3 QVAIYGKGGIGKST 16
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.419
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 264,599
Number of extensions: 9789
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 114
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.6 bits)