BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2517
(613 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2
Complexed With Phosphate
pdb|1M7R|A Chain A, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
pdb|1M7R|B Chain B, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
Length = 657
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 121/195 (62%), Gaps = 4/195 (2%)
Query: 191 WLSRLDGSSWMSNIKEILSCAHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLNPE 250
WLS L+ + W+ +IK IL+ A +A ++ T+V+VH S+G D T +TSL +ML+
Sbjct: 382 WLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGY 441
Query: 251 CRTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLYQLQNQFVCS 310
RTIRG + L+E+EWL G+ FQLR + + +SP FL F+DC++Q+ QF +
Sbjct: 442 YRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADA-DRSPVFLQFIDCVWQMTRQFPTA 500
Query: 311 FEFSADFLILIFEHSYFSPYGTFLLNSEKERVDENLSTRTSSLWSYVNRPDLLAQLKNPL 370
FEF+ FLI I +H Y +GTFL NSE++R ENL RT SLWSY+N L NPL
Sbjct: 501 FEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYIN--SQLEDFTNPL 558
Query: 371 Y-QVNNNLLHMAIDM 384
Y +N++L+ M
Sbjct: 559 YGSYSNHVLYPVASM 573
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 6/179 (3%)
Query: 438 YAFYYRPLYPILEDGWKIFSXXXXXXXXXXXXXXXWRVTHCNEKYEVCSSYSRLLIVPNS 497
+AF Y+ ++P E+GWK++ WR+T NE+YE+C +Y LL+VP +
Sbjct: 196 FAFEYKEVFP--ENGWKLYDPLLEYRRQGIPNES-WRITKINERYELCDTYPALLVVPAN 252
Query: 498 ITDDVIKESAKYRDLGRFPVLCYKYEAKSSILVRSSQPLPGPTAKRCKADEKLLNGYLKS 557
I D+ +K A +R GR PVL + + + + R SQP+ G + KR K DEK L + S
Sbjct: 253 IPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDS 312
Query: 558 GKKG---IIIDTRTQTLAQSAKNKGGGMELEMFYPQWRRVHKPVDKHTVLLDSLAKFVE 613
+ I D R A + K KGGG E E Y V + V+ +SL K E
Sbjct: 313 NAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKE 371
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 21 WKKVKKLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCITSSAMEFADL 80
++ ++ + L+E+EWL G+ FQLR + + +SP FL F+DC+ +F
Sbjct: 442 YRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADA-DRSPVFLQFIDCVWQMTRQFPTA 500
Query: 81 IPISKLDGVTLSGACYKTPVDGTLCMTGHHLFLSSRKQGVEEL 123
++ +T+ Y C+ G L S +++G E L
Sbjct: 501 FEFNEYFLITILDHLYS-------CLFGTFLCNSEQQRGKENL 536
>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3-Phosphate
pdb|1ZVR|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3,5-Bisphosphate
Length = 528
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 121/195 (62%), Gaps = 4/195 (2%)
Query: 191 WLSRLDGSSWMSNIKEILSCAHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLNPE 250
WLS L+ + W+ +IK IL+ A +A ++ T+V+VH S+G D T +TSL +ML+
Sbjct: 310 WLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGY 369
Query: 251 CRTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLYQLQNQFVCS 310
RTIRG + L+E+EWL G+ FQLR + + +SP FL F+DC++Q+ QF +
Sbjct: 370 YRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADA-DRSPVFLQFIDCVWQMTRQFPTA 428
Query: 311 FEFSADFLILIFEHSYFSPYGTFLLNSEKERVDENLSTRTSSLWSYVNRPDLLAQLKNPL 370
FEF+ FLI I +H Y +GTFL NSE++R ENL RT SLWSY+N L NPL
Sbjct: 429 FEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYIN--SQLEDFTNPL 486
Query: 371 Y-QVNNNLLHMAIDM 384
Y +N++L+ M
Sbjct: 487 YGSYSNHVLYPVASM 501
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 6/179 (3%)
Query: 438 YAFYYRPLYPILEDGWKIFSXXXXXXXXXXXXXXXWRVTHCNEKYEVCSSYSRLLIVPNS 497
+AF Y+ ++P E+GWK++ WR+T NE+YE+C +Y LL+VP +
Sbjct: 124 FAFEYKEVFP--ENGWKLYDPLLEYRRQGIPNES-WRITKINERYELCDTYPALLVVPAN 180
Query: 498 ITDDVIKESAKYRDLGRFPVLCYKYEAKSSILVRSSQPLPGPTAKRCKADEKLLNGYLKS 557
I D+ +K A +R GR PVL + + + + R SQP+ G + KR K DEK L + S
Sbjct: 181 IPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDS 240
Query: 558 GKKG---IIIDTRTQTLAQSAKNKGGGMELEMFYPQWRRVHKPVDKHTVLLDSLAKFVE 613
+ I D R A + K KGGG E E Y V + V+ +SL K E
Sbjct: 241 NAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKE 299
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 21 WKKVKKLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCITSSAMEFADL 80
++ ++ + L+E+EWL G+ FQLR + + +SP FL F+DC+ +F
Sbjct: 370 YRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADA-DRSPVFLQFIDCVWQMTRQFPTA 428
Query: 81 IPISKLDGVTLSGACYKTPVDGTLCMTGHHLFLSSRKQGVEEL 123
++ +T+ Y C+ G L S +++G E L
Sbjct: 429 FEFNEYFLITILDHLYS-------CLFGTFLCNSEQQRGKENL 464
>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6)
Length = 512
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 19/225 (8%)
Query: 152 DFRVIMLGIDNTDHFNCIAQSLEDIVNMASNDVTCSMDKWLSRLDGSSWMSNIKEILSCA 211
+ R +GI+N + + SL+ ++ + S++ + S L+ S W+ +IK ++ A
Sbjct: 263 NIRFQFVGIEN---IHVMRSSLQKLLEVNGTK-GLSVNDFYSGLESSGWLRHIKAVMDAA 318
Query: 212 HYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYP 271
++A+ + E +VLVH S+G D T + SL ++L+ RTI+G LIE++W+ G+
Sbjct: 319 VFLAKAITVENASVLVHCSDGWDRTSQVCSLGSLLLDSYYRTIKGFMVLIEKDWISFGHK 378
Query: 272 FQLRHRYSCYSPLRG--KSQSPTFLLFLDCLYQLQNQFVCSFEFSADFLILIFEHSYFSP 329
F R C L G K SP F FL+C++ L QF +FEFS FL+ I EH +
Sbjct: 379 FSER----C-GQLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFSEAFLLQIHEHIHSCQ 433
Query: 330 YGTFLLNSEKERVDENLSTRTSSLWSYVNRPDLLAQLK---NPLY 371
+G FL N +KER + L +T SLW P LL K NPLY
Sbjct: 434 FGNFLGNCQKEREELKLKEKTYSLW-----PFLLEDQKKYLNPLY 473
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 115/248 (46%), Gaps = 8/248 (3%)
Query: 371 YQVNNNLLHMAIDMVERKLNKESPGGVIIIKCKDFRVIMLGIDNTDHFNCIAQSLEDIVN 430
+Q +LH I VE KL + G ++I+CK+FR + + + I SL +
Sbjct: 42 HQKETWILHHHIASVE-KLALTTSGCPLVIQCKNFRTVHFIVPRERDCHDIYNSLLQLSK 100
Query: 431 MEVLKYKYAFYYRPLYPILE--DGWKIFSXXXXXXXXXXXXXXXWRVTHCNEKYEVCSSY 488
+ YAF Y P E GW++ W+++ N Y++C +Y
Sbjct: 101 QAKYEDLYAFSYNPKQNDSERLQGWQLIDLAEEYKRMGVPNSH-WQLSDANRDYKICETY 159
Query: 489 SRLLIVPNSITDDVIKESAKYRDLGRFPVLCYKYEAKSSILVRSSQPLPGPTAKRCKADE 548
R L VP + +I S+K+R GRFPVL Y ++ K + + R SQPL G +A RC DE
Sbjct: 160 PRELYVPRIASKPIIVGSSKFRSKGRFPVLSYYHQDKEAAICRCSQPLSGFSA-RCLEDE 218
Query: 549 KLLNGYLKS---GKKGIIIDTRTQTLAQSAKNKGGGMELEMFYPQWRRVHKPVDKHTVLL 605
LL K+ + ++DTR + A + + G G E E Y R ++ V+
Sbjct: 219 HLLQAISKANPVNRYMYVMDTRPKLNAMANRAAGKGYENEDNYSNIRFQFVGIENIHVMR 278
Query: 606 DSLAKFVE 613
SL K +E
Sbjct: 279 SSLQKLLE 286
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 102 GTLCMTGHHLFLSSRKQGVEELWLLHMAIDMVERKLNKESPGGVIIIKCKDFRVIMLGI- 160
GTL +T HL Q +E W+LH I VE KL + G ++I+CK+FR + +
Sbjct: 27 GTLYLTATHLLFIDSHQ--KETWILHHHIASVE-KLALTTSGCPLVIQCKNFRTVHFIVP 83
Query: 161 ---DNTDHFNCIAQ 171
D D +N + Q
Sbjct: 84 RERDCHDIYNSLLQ 97
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 21 WKKVKKLQSLIEREWLQAGYPFQLRHRYSCYSPLRG--KSQSPTFLLFLDCITSSAMEFA 78
++ +K LIE++W+ G+ F R C L G K SP F FL+C+ +F
Sbjct: 358 YRTIKGFMVLIEKDWISFGHKFSER----C-GQLDGDPKEVSPVFTQFLECVWHLTEQFP 412
Query: 79 DLIPISK 85
S+
Sbjct: 413 QAFEFSE 419
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,268,132
Number of Sequences: 62578
Number of extensions: 735947
Number of successful extensions: 1378
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1359
Number of HSP's gapped (non-prelim): 14
length of query: 613
length of database: 14,973,337
effective HSP length: 105
effective length of query: 508
effective length of database: 8,402,647
effective search space: 4268544676
effective search space used: 4268544676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)