Query psy2517
Match_columns 613
No_of_seqs 375 out of 929
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 18:12:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1089|consensus 100.0 2.3E-88 4.9E-93 738.3 19.9 310 75-386 1-506 (573)
2 KOG4471|consensus 100.0 2.2E-86 4.7E-91 712.9 19.6 349 31-390 172-540 (717)
3 PF06602 Myotub-related: Myotu 100.0 7.3E-72 1.6E-76 594.2 18.0 308 30-343 25-352 (353)
4 KOG4471|consensus 100.0 6.1E-59 1.3E-63 501.0 17.5 232 381-613 85-332 (717)
5 KOG1089|consensus 100.0 2.1E-58 4.5E-63 503.6 15.7 233 380-613 59-301 (573)
6 KOG1090|consensus 100.0 1.4E-46 2.9E-51 418.4 10.2 204 166-380 1217-1439(1732)
7 PF06602 Myotub-related: Myotu 100.0 9E-46 2E-50 394.3 13.0 177 436-613 1-187 (353)
8 KOG1090|consensus 99.3 1.1E-13 2.3E-18 157.2 -1.5 56 18-83 1302-1363(1732)
9 smart00012 PTPc_DSPc Protein t 96.4 0.013 2.7E-07 50.5 7.2 62 222-322 39-100 (105)
10 smart00404 PTPc_motif Protein 96.4 0.013 2.7E-07 50.5 7.2 62 222-322 39-100 (105)
11 PF13350 Y_phosphatase3: Tyros 93.9 0.08 1.7E-06 50.8 4.7 26 223-248 125-150 (164)
12 smart00195 DSPc Dual specifici 92.3 0.23 4.9E-06 45.7 5.1 31 211-241 67-97 (138)
13 cd00127 DSPc Dual specificity 91.7 0.36 7.8E-06 44.1 5.6 23 219-241 78-100 (139)
14 PF00782 DSPc: Dual specificit 90.0 0.42 9E-06 43.5 4.4 23 219-241 70-92 (133)
15 PF03162 Y_phosphatase2: Tyros 89.6 0.36 7.8E-06 46.9 3.8 60 200-269 71-131 (164)
16 COG2365 Protein tyrosine/serin 88.0 0.97 2.1E-05 46.8 5.9 42 221-269 135-176 (249)
17 PF02893 GRAM: GRAM domain; I 81.8 0.51 1.1E-05 38.6 0.3 60 76-135 2-67 (69)
18 smart00194 PTPc Protein tyrosi 80.8 2.5 5.4E-05 43.3 5.1 63 222-324 193-255 (258)
19 PTZ00242 protein tyrosine phos 80.1 3.7 8.1E-05 39.8 5.8 24 220-243 96-119 (166)
20 cd00047 PTPc Protein tyrosine 79.9 3 6.5E-05 41.8 5.2 64 221-324 165-228 (231)
21 PTZ00393 protein tyrosine phos 79.5 3.2 7E-05 42.9 5.3 93 145-243 84-191 (241)
22 PF00102 Y_phosphatase: Protei 77.9 3.4 7.3E-05 40.8 4.9 27 219-245 167-193 (235)
23 PHA02742 protein tyrosine phos 77.4 2.9 6.2E-05 44.5 4.4 61 223-323 230-290 (303)
24 PF05706 CDKN3: Cyclin-depende 73.2 7.2 0.00016 38.3 5.5 37 212-249 124-160 (168)
25 PHA02740 protein tyrosine phos 72.7 6.7 0.00014 41.7 5.7 23 222-244 221-243 (298)
26 PHA02746 protein tyrosine phos 71.3 7.1 0.00015 41.9 5.6 62 223-324 248-309 (323)
27 TIGR01244 conserved hypothetic 70.2 6.5 0.00014 36.7 4.4 30 218-248 82-111 (135)
28 COG5599 PTP2 Protein tyrosine 69.2 2.6 5.7E-05 44.1 1.7 38 213-250 206-246 (302)
29 KOG0793|consensus 68.2 4.4 9.5E-05 47.4 3.3 45 202-246 907-951 (1004)
30 PHA02738 hypothetical protein; 68.1 8 0.00017 41.5 5.1 63 223-325 228-290 (320)
31 PHA02747 protein tyrosine phos 65.8 11 0.00025 40.2 5.7 24 223-246 230-253 (312)
32 COG2453 CDC14 Predicted protei 65.4 10 0.00023 37.1 5.0 36 205-241 89-124 (180)
33 PF11605 Vps36_ESCRT-II: Vacuo 61.2 7.1 0.00015 34.3 2.6 60 75-135 10-72 (89)
34 smart00568 GRAM domain in gluc 57.4 5.3 0.00012 31.7 1.1 37 99-135 21-59 (61)
35 PRK12361 hypothetical protein; 56.1 14 0.0003 42.4 4.6 31 211-241 164-194 (547)
36 PF04273 DUF442: Putative phos 55.2 15 0.00032 33.5 3.7 32 214-246 78-109 (110)
37 KOG2283|consensus 54.8 17 0.00036 40.9 4.8 99 142-240 9-125 (434)
38 PF15581 Imm35: Immunity prote 51.2 11 0.00023 33.2 2.0 19 18-36 26-44 (93)
39 KOG2836|consensus 47.9 94 0.002 29.8 7.8 27 219-245 94-120 (173)
40 PF09954 DUF2188: Uncharacteri 42.7 21 0.00046 28.8 2.4 47 187-233 7-55 (62)
41 PF15581 Imm35: Immunity prote 39.7 14 0.0003 32.5 0.9 23 246-268 24-46 (93)
42 KOG2433|consensus 39.7 15 0.00032 40.7 1.4 58 209-269 489-555 (577)
43 KOG0789|consensus 39.6 36 0.00078 37.0 4.4 23 221-243 298-320 (415)
44 PF13062 DUF3924: Protein of u 36.2 26 0.00056 28.0 1.8 16 27-42 37-52 (62)
45 KOG0792|consensus 35.2 49 0.0011 40.9 4.8 36 204-240 1045-1081(1144)
46 KOG1716|consensus 33.5 75 0.0016 33.5 5.4 21 219-239 152-172 (285)
47 KOG1572|consensus 32.6 39 0.00084 35.1 3.0 40 200-241 128-167 (249)
48 KOG1719|consensus 31.5 63 0.0014 31.7 4.0 34 211-244 98-133 (183)
49 PF14566 PTPlike_phytase: Inos 31.4 56 0.0012 31.0 3.7 26 221-246 123-148 (149)
50 cd01201 Neurobeachin Neurobeac 28.6 1.3E+02 0.0028 27.6 5.3 69 100-171 18-103 (108)
51 KOG0791|consensus 28.3 70 0.0015 35.2 4.2 57 190-246 250-311 (374)
52 KOG3294|consensus 26.2 44 0.00096 34.7 2.1 27 189-215 110-136 (261)
53 PLN02727 NAD kinase 23.2 88 0.0019 38.5 4.1 30 213-242 331-361 (986)
54 PF04179 Init_tRNA_PT: Initiat 23.1 1.4E+02 0.003 33.9 5.5 49 202-250 354-405 (451)
55 PF14470 bPH_3: Bacterial PH d 22.0 1.6E+02 0.0034 24.9 4.6 71 99-172 21-93 (96)
56 PRK15375 pathogenicity island 21.8 63 0.0014 37.1 2.5 20 225-244 469-488 (535)
No 1
>KOG1089|consensus
Probab=100.00 E-value=2.3e-88 Score=738.33 Aligned_cols=310 Identities=43% Similarity=0.713 Sum_probs=291.1
Q ss_pred hhhccccccccccceeecCCCcc--CCCCCccccccceeEEE---ecccCcceeeeeechhhHHHhhcc---CCCCCcee
Q psy2517 75 MEFADLIPISKLDGVTLSGACYK--TPVDGTLCMTGHHLFLS---SRKQGVEELWLLHMAIDMVERKLN---KESPGGVI 146 (613)
Q Consensus 75 ~eF~e~~~~~~~d~v~l~~~~~~--~~~~GtlcitghhLi~s---~r~~~~~elwll~~~Id~v~kk~~---~~~~gg~l 146 (613)
|||+|.|+++||++|.++.+..+ .+..||+|+|+||+||+ .++++.+|+|++|.+||+|+|... +...||.+
T Consensus 1 ~~~~e~i~~~kv~~v~l~~~~~~~~~~~~Gtl~lt~~hli~~~~~~~~~~~~e~w~l~~~i~~v~k~~~~~~~~~~g~~i 80 (573)
T KOG1089|consen 1 MEFAEYIKVPKVHNVELHDRENPVTLALVGTLLLTTHHLIFKILQCRQANSKELWLLHDNIDSVEKDPSTFKNSTSGGPI 80 (573)
T ss_pred CcchhcCccceecceeEecCCCCccccccceEEEeeceeeeeecccccccchhhccccchHhhhccCcceeeccccCCch
Confidence 79999999999999999865533 25889999999999999 667889999999999999999722 22379999
Q ss_pred EEeecCceEEEecccCchhHHHHHHHHHHH--------------------------------------------------
Q psy2517 147 IIKCKDFRVIMLGIDNTDHFNCIAQSLEDI-------------------------------------------------- 176 (613)
Q Consensus 147 ~~kckn~~i~~l~i~~i~~~~~v~~S~~~L-------------------------------------------------- 176 (613)
+++|||++++.+.|+...++++++.++++|
T Consensus 81 ~l~CK~~~~~~~~i~~~~e~~~v~~s~~~ls~~~~~~~ly~f~y~~~~~~~~~~~gw~~fd~~~ef~r~~~~~~~~~w~~ 160 (573)
T KOG1089|consen 81 TLKCKDFRVISFLIPDDLECRDVYSSIENLSNIDSILQLYAFFYAPNFQNLEDPSGWKMFDPESEFDRMGIRKGNSHWRI 160 (573)
T ss_pred hhhhhcceEEEEeccchHHHHHHHHHHHHhcccCccccccccccCCcccccccccCceecchHhHHHHHhccCCCCCceE
Confidence 999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy2517 177 -------------------------------------------------------------------------------- 176 (613)
Q Consensus 177 -------------------------------------------------------------------------------- 176 (613)
T Consensus 161 ssvNe~y~vC~tyP~~l~VPksitd~~l~~~~~fRs~gR~Pvl~y~h~~n~aal~R~SqPL~g~~~~Rc~~DE~il~ai~ 240 (573)
T KOG1089|consen 161 SSVNENYEVCPTYPEKLIVPKSITDEDLKKSAKFRSGGRFPVLSYSHKENGAALMRSSQPLSGFIAKRCREDEKILEAIL 240 (573)
T ss_pred EecCCCeeeccCCCceeEecCCCchHhhhccchhccCCccceEEEEeccCCcceeeecCCCcccccccchHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------------HHhhcCCCCCChhhhccccCCC
Q psy2517 177 ----------------------------------------------------------VNMASNDVTCSMDKWLSRLDGS 198 (613)
Q Consensus 177 ----------------------------------------------------------l~~~c~~~~~~~~~wl~~le~s 198 (613)
|.++|++..+++++|++.||+|
T Consensus 241 k~~~~~~~~yivDtRp~~nA~an~A~g~g~En~~~Y~~~~~~f~~i~nIh~v~~s~~kl~e~c~~~~~~~~~~ls~LE~S 320 (573)
T KOG1089|consen 241 KANPNSKRGYIVDTRPRTNAMANRAKGGGYENEDNYSQWKFLFLGIENIHVVRSSLQKLLEVCNNFLPTMDKWLSLLESS 320 (573)
T ss_pred hhCcCccceeEEeccchhhHHHHHhhcCCCcchhhHHHHHHHhcCcchHHHHHHHHHHHHHHHhccCccHHHHHHHhhhc
Confidence 1189998888999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhhhCCceEEEEcCCCCCcchhHHHHHHHhhCccchhhhhhhhhhhhhhhhcCCCccccccC
Q psy2517 199 SWMSNIKEILSCAHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYPFQLRHRY 278 (613)
Q Consensus 199 ~Wl~~v~~~L~~a~~ia~~l~~~~~sVlvh~sdGwD~t~qvsSLaql~lDPyyRTi~GF~~LIeKEWi~~GH~F~~R~~~ 278 (613)
+||+||+++|++|+.||++|..+|.|||||||||||||+|||||||||||||||||+|||+|||||||+|||||.+||||
T Consensus 321 gWL~~i~~~L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllLDP~yRTi~GFqsLIeKeWi~~GH~F~~Rc~h 400 (573)
T KOG1089|consen 321 GWLKHIRAILKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLLDPYYRTIKGFQSLIEKEWISFGHKFLDRCGH 400 (573)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHcCCcHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHhhhCCCCCCCCHHHHHHHHHhhcccCcCcccCCCHHHHHHhccCccccccccccc
Q psy2517 279 SCYSPLRGKSQSPTFLLFLDCLYQLQNQFVCSFEFSADFLILIFEHSYFSPYGTFLLNSEKERVDENLSTRTSSLWSYVN 358 (613)
Q Consensus 279 ~~~~~~~~~~~sPiFl~FLDcv~Ql~~qfP~~FEFne~~L~~l~~h~ys~~fgtFl~nse~eR~~~~~~~~t~SlW~~i~ 358 (613)
..+....++++||||+|||||||||++|||++|||||+||+.|++|+|+|+|||||+|||+||.++++.++|.|||+|+.
T Consensus 401 l~~~~~~~ke~SPvF~qFLDcvwQl~~QfP~~FEFne~fLi~L~~h~ys~qfGtFl~NsekeR~e~~~~~kt~slW~~~~ 480 (573)
T KOG1089|consen 401 LAYNDGDSKEESPVFLQFLDCVWQLLEQFPCAFEFNERFLIKLHEHAYSSQFGTFLGNSEKERRELNLSEKTTSLWDYLL 480 (573)
T ss_pred cccccCCCcccCcHHHHHHHHHHHHHhhCCcceehhHHHHHHHHHhhHHhhhccccccCHHHHHHhcccccceehHHhHh
Confidence 98766678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCcccccccchhhhhhhhhh
Q psy2517 359 RPDLLAQLKNPLYQVNNNLLHMAIDMVE 386 (613)
Q Consensus 359 ~~~~~~~f~Np~Y~~~~~vlwpsV~~VE 386 (613)
++ ++.|+||+|+|+.+++||.++..+
T Consensus 481 ~~--~~~f~Nply~~~~~~~~~~l~P~~ 506 (573)
T KOG1089|consen 481 PR--KEEFVNPLYDPRYLVIWPILAPQT 506 (573)
T ss_pred hh--hhhhcCccccccccceeeccCccc
Confidence 85 899999999999999999777766
No 2
>KOG4471|consensus
Probab=100.00 E-value=2.2e-86 Score=712.89 Aligned_cols=349 Identities=30% Similarity=0.477 Sum_probs=314.4
Q ss_pred HHHHHHHhcCccccccccccCCCCC-CCCCCCeEEEeeccccc----chhhhccccccccc------cceee-cCCCccC
Q psy2517 31 IEREWLQAGYPFQLRHRYSCYSPLR-GKSQSPTFLLFLDCITS----SAMEFADLIPISKL------DGVTL-SGACYKT 98 (613)
Q Consensus 31 ~~~ew~~~gh~f~~r~~~~~~~~~~-~~~~~P~fL~~~d~~~~----~~~eF~e~~~~~~~------d~v~l-~~~~~~~ 98 (613)
-..|.-++|.|- +=|+.+..|..+ .|++||.-|+++-|+.- .+..|+...++|.+ -+.+| +|+++.+
T Consensus 172 ~~~E~~r~g~~n-~~WRIs~iNs~Y~LC~SYP~~l~VP~~isD~eL~~VasFRsr~RlPvlsw~Hp~sgAvIaRcSQPlV 250 (717)
T KOG4471|consen 172 FKNEYRRQGLPN-ESWRISKINSNYKLCDSYPAKLVVPKSISDEELLRVASFRSRCRLPVLSWRHPESGAVIARCSQPLV 250 (717)
T ss_pred hHhHHHhcCCCh-hheeeecccccccccccCccceEeccccCHHHHHHHhhhhhcCccceEEEEcCCCCceEEecCCccc
Confidence 456899999998 599999999877 99999999999999986 88899999999988 33444 6677768
Q ss_pred CCCCccccccceeEEEecccCc-----ceeeeee--chhhHHHhhccCCCCCceeEEeecCceEEEecccCchhHHHHHH
Q psy2517 99 PVDGTLCMTGHHLFLSSRKQGV-----EELWLLH--MAIDMVERKLNKESPGGVIIIKCKDFRVIMLGIDNTDHFNCIAQ 171 (613)
Q Consensus 99 ~~~GtlcitghhLi~s~r~~~~-----~elwll~--~~Id~v~kk~~~~~~gg~l~~kckn~~i~~l~i~~i~~~~~v~~ 171 (613)
+..|.++..|++|+.++.++++ +.|.|++ +...+|..|..| +|++-...|+|.+|++|+|.||| .||.
T Consensus 251 G~~g~Rn~~DEkll~~i~~a~A~~~e~~KL~I~DARp~~nAvANkAkG--GG~Es~~~Y~naEi~Fl~i~NIH---~mR~ 325 (717)
T KOG4471|consen 251 GWSGKRNKDDEKLLQAIADANAQDGERRKLLIVDARPYTNAVANKAKG--GGYESEEAYPNAEIVFLGIHNIH---VMRE 325 (717)
T ss_pred chhcccccchHHHHHHHHHhcccccccceEEEEecccchhhhhccccC--CCccChhccccceEEEeecchhH---HHHH
Confidence 8999999999999999876654 3678876 677778877777 88899999999999999987776 6789
Q ss_pred HHHHHHHhhcCCCCCChhhhccccCCCchHHHHHHHHHHHHHHHHHhhhCCceEEEEcCCCCCcchhHHHHHHHhhCccc
Q psy2517 172 SLEDIVNMASNDVTCSMDKWLSRLDGSSWMSNIKEILSCAHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLNPEC 251 (613)
Q Consensus 172 S~~~Ll~~~c~~~~~~~~~wl~~le~s~Wl~~v~~~L~~a~~ia~~l~~~~~sVlvh~sdGwD~t~qvsSLaql~lDPyy 251 (613)
|+.++ ++.|.+ ++++++|++.||+|+||+||+.+|.+|..||+.++.+++|||||||||||||+||+|||||||||||
T Consensus 326 s~~~~-k~~~~~-~~d~s~wlS~Le~T~WL~Hi~~lLaga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlLDpYY 403 (717)
T KOG4471|consen 326 SLRKL-KEICYP-SPDESNWLSALESTHWLEHISSLLAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLLDPYY 403 (717)
T ss_pred HHHhH-HHhhcC-CCCchhHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHhchhh
Confidence 99996 689976 4578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhcCCCccccccCCCCCCCCCCCCCchhhHHHHHHHHHhhhCCCCCCCCHHHHHHHHHhhcccCcC
Q psy2517 252 RTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLYQLQNQFVCSFEFSADFLILIFEHSYFSPYG 331 (613)
Q Consensus 252 RTi~GF~~LIeKEWi~~GH~F~~R~~~~~~~~~~~~~~sPiFl~FLDcv~Ql~~qfP~~FEFne~~L~~l~~h~ys~~fg 331 (613)
|||+|||+||||||++|||||++|+||+..+++ ..++||||||||||||||++|||++|||||.||+.|++|+|||+||
T Consensus 404 RTieGFqvLVEkeWLsFGHkFadRvGhg~ns~~-~ndrsPVFLQwlDcV~Ql~rqfP~aFEFne~fLi~i~dh~ySClFG 482 (717)
T KOG4471|consen 404 RTIEGFQVLVEKEWLSFGHKFADRVGHGNNSHG-DNDRSPVFLQWLDCVWQLMRQFPCAFEFNEAFLIKIVDHLYSCLFG 482 (717)
T ss_pred hhhhhhHHHHHHHHHhcCChhhhhcCCCCCccc-ccccCchhHHHHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999976653 7899999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHhccCcccccccccccCccccccccCcccccc-cchhhhhhhhhhhccC
Q psy2517 332 TFLLNSEKERVDENLSTRTSSLWSYVNRPDLLAQLKNPLYQVN-NNLLHMAIDMVERKLN 390 (613)
Q Consensus 332 tFl~nse~eR~~~~~~~~t~SlW~~i~~~~~~~~f~Np~Y~~~-~~vlwpsV~~VErKL~ 390 (613)
|||||||+||.+.++.++|.|||+||+.. ++.|.||+|+|. .+||+|--++.-..+|
T Consensus 483 TFLcN~ekeR~~~~i~~~t~slWs~l~s~--~~~f~Np~y~~~s~~vL~Pvas~r~l~LW 540 (717)
T KOG4471|consen 483 TFLCNSEKEREKEDITERTGSLWSYLNSS--LSNFCNPFYDPSSNGVLYPVASVRALELW 540 (717)
T ss_pred hhhcCCHHHHhhcCcccchhhHHHHHhhc--chhhcCcccCchhcccccchHhhhchhhc
Confidence 99999999999999999999999999876 778999999986 5899986665543344
No 3
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=100.00 E-value=7.3e-72 Score=594.24 Aligned_cols=308 Identities=31% Similarity=0.493 Sum_probs=230.2
Q ss_pred HHHHHHHHhcCccccccccccCCCCC-CCCCCCeEEEeeccccc----chhhhccccccccc------cce-eecCCCcc
Q psy2517 30 LIEREWLQAGYPFQLRHRYSCYSPLR-GKSQSPTFLLFLDCITS----SAMEFADLIPISKL------DGV-TLSGACYK 97 (613)
Q Consensus 30 l~~~ew~~~gh~f~~r~~~~~~~~~~-~~~~~P~fL~~~d~~~~----~~~eF~e~~~~~~~------d~v-~l~~~~~~ 97 (613)
=.++||-++|-+-...|+.+..|..+ .|++||..|.++..+.. .+..|...-+.|.+ .+. +++.++..
T Consensus 25 d~~~E~~R~g~~~~~~Wri~~~N~~y~~c~tYP~~lvVP~~i~D~~l~~~a~~r~~~R~Pv~~W~~~~~~a~L~Rssqp~ 104 (353)
T PF06602_consen 25 DWEREFERLGLPSDSSWRISDINSNYELCPTYPSLLVVPSSISDEELKKSAKFRSKGRFPVLSWRHPENGAVLLRSSQPL 104 (353)
T ss_dssp -HHHHHHHTT-SCSS-EEEEGCCTTSSS-TTS-SSEEEETTS-HHHHHHHHHHBGGG---EEEEE-TTT--EEEEEE-B-
T ss_pred CHHHHHHHhCCCCCCCeeEEEEcCCCCccccccceEEEEEEecHHHHHHhhhhccCCccceEEEeecCCCeEEEEecccc
Confidence 37899999999997779999999876 89999999999999875 88899999999977 444 45544443
Q ss_pred CCCCCccccccceeEEE-e----cccCcceeeeee--chhhHHHhhccCCCCCceeEEeecCceEEEecccCchhHHHHH
Q psy2517 98 TPVDGTLCMTGHHLFLS-S----RKQGVEELWLLH--MAIDMVERKLNKESPGGVIIIKCKDFRVIMLGIDNTDHFNCIA 170 (613)
Q Consensus 98 ~~~~GtlcitghhLi~s-~----r~~~~~elwll~--~~Id~v~kk~~~~~~gg~l~~kckn~~i~~l~i~~i~~~~~v~ 170 (613)
....+..|.++++|+.+ + .....+.+.+.+ +.+.+...+..| +|.+..-.|+++++++++|+||| .|+
T Consensus 105 ~g~~~~r~~~De~ll~~~i~~~~~~~~~~~~~i~D~R~~~~a~~n~~~G--~G~E~~~~Y~~~~i~fl~i~nih---~vr 179 (353)
T PF06602_consen 105 VGLSNSRSKEDEKLLQAAISSSKSNPSKSKLVIVDARPKLNALANRAKG--GGYENESNYPNCEIIFLNIPNIH---SVR 179 (353)
T ss_dssp -TTTT---HHHHHHH-HHH--HHHSTT-SSEEEEE-SSCHHHHHHHHTT---S---TTTSTTEEEEE-----HH---HHH
T ss_pred ccccccCchhhHHHHHHHHhhcccccccCceEEEcchhhhhhhhhhhhc--cCCccccccccceEEeeecCcHH---HHH
Confidence 34567899999999954 3 123345566654 344444444434 34344556899999999988876 477
Q ss_pred HHHHHHHHhhc-CCCCCChhhhccccCCCchHHHHHHHHHHHHHHHHHhhhCCceEEEEcCCCCCcchhHHHHHHHhhCc
Q psy2517 171 QSLEDIVNMAS-NDVTCSMDKWLSRLDGSSWMSNIKEILSCAHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLNP 249 (613)
Q Consensus 171 ~S~~~Ll~~~c-~~~~~~~~~wl~~le~s~Wl~~v~~~L~~a~~ia~~l~~~~~sVlvh~sdGwD~t~qvsSLaql~lDP 249 (613)
.|+.+|. ++| .....+.++|++.||+|+||+||+.+|++|..||++|+.+|.+|||||+||||||+||||||||||||
T Consensus 180 ~s~~kl~-~~~~~~~~~~~~~~~~~le~s~Wl~~v~~~L~~a~~i~~~l~~~~~~Vlvh~~dGwDrt~q~~sL~ql~lDp 258 (353)
T PF06602_consen 180 DSFQKLR-ELCSNTNSDNDDSWLSSLESSNWLDHVRSILSGASRIADLLHDEGSSVLVHCSDGWDRTSQLSSLAQLLLDP 258 (353)
T ss_dssp HHHHHHH-HHH-SSSS--HHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTT--EEEEECTTSSSHHHHHHHHHHHHH-C
T ss_pred HHHHHHH-HHhcccccCCchhhhhccccCChHHHHHHHHHHHHHHHHHhhccCceEEEEcCCCCcccHHHHHHHHHHHHh
Confidence 8999986 588 55566789999999999999999999999999999999899999999999999999999999999999
Q ss_pred cchhhhhhhhhhhhhhhhcCCCccccccCCCCCCCCCCCCCchhhHHHHHHHHHhhhCCCCCCCCHHHHHHHHHhhcccC
Q psy2517 250 ECRTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLYQLQNQFVCSFEFSADFLILIFEHSYFSP 329 (613)
Q Consensus 250 yyRTi~GF~~LIeKEWi~~GH~F~~R~~~~~~~~~~~~~~sPiFl~FLDcv~Ql~~qfP~~FEFne~~L~~l~~h~ys~~ 329 (613)
|||||+||++||||||++|||||.+|+||+.......++.||||+|||||||||++|||++|||||.||++|++|+|||+
T Consensus 259 yyRTi~GF~~LIeKeW~~fGH~F~~R~~~~~~~~~~~~~~sPvFl~FLDcV~ql~~q~P~~FEFne~~L~~l~~~~~s~~ 338 (353)
T PF06602_consen 259 YYRTIEGFQVLIEKEWISFGHPFADRCGHGSSSSSSSSERSPVFLQFLDCVWQLLRQFPTAFEFNESLLIFLADHSYSGR 338 (353)
T ss_dssp GGGSHHHHHHHHHHHTTTTT--HHHHHTTT--SSTTGCC---HHHHHHHHHHHHHHHSTTT-SB-HHHHHHHHHHHCCTS
T ss_pred hhhhHHHHHHHHHHHHHhcCcchhhhcCCcccccccccccccchhHHHHHHHHHHHhCCCceecCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999855555678999999999999999999999999999999999999999999
Q ss_pred cCcccCCCHHHHHH
Q psy2517 330 YGTFLLNSEKERVD 343 (613)
Q Consensus 330 fgtFl~nse~eR~~ 343 (613)
|||||+|||+||.+
T Consensus 339 fgtFl~n~e~eR~~ 352 (353)
T PF06602_consen 339 FGTFLFNSEKEREE 352 (353)
T ss_dssp STTT-SSSHHHHHH
T ss_pred CCccccCCHHHhcc
Confidence 99999999999986
No 4
>KOG4471|consensus
Probab=100.00 E-value=6.1e-59 Score=500.97 Aligned_cols=232 Identities=31% Similarity=0.527 Sum_probs=211.8
Q ss_pred hhhhhhhccCCCC--CCceEEeeecCceEEEEeecCCchhh-HHHHHHHHHhccc-ccccccccccCCCcccc----CCC
Q psy2517 381 AIDMVERKLNKES--PGGVIIIKCKDFRVIMLGIDNTDHFN-CIAQSLEDIVNME-VLKYKYAFYYRPLYPIL----EDG 452 (613)
Q Consensus 381 sV~~VErKL~k~s--~g~~l~I~CKDfR~l~f~f~~~~~~~-~v~~sL~~ls~p~-~~~~lfAF~y~p~~~~~----~~g 452 (613)
.|+.||++-.+.+ +...|+|.|||+|++++.|+++++|+ ++++.|.+.++|. ....||||.|...+... .++
T Consensus 85 ~Ie~vek~~~~~~g~ns~~L~i~CKDmr~lR~~fk~~~q~r~~~~e~L~~~~~p~~~~~~LFaF~~~~~~~~ng~e~~~~ 164 (717)
T KOG4471|consen 85 VIERVEKRGGATSGENSFGLEITCKDMRNLRCAFKQEEQCRRDWFERLNRAAFPPAKSEDLFAFAYHAWFPVNGSENGQH 164 (717)
T ss_pred hhhhhhhcCccccCCcceeEEEEeccccceeeecCcccccHHHHHHHHHHhcCCcccchhhhhcccHhhcCCCCcccccc
Confidence 4677887654333 34569999999999999999999987 9999999999875 56789999999877641 245
Q ss_pred ccccCc--HHHHHHHCCCCCCCcEEEeccCCCccccCCCcceeeccccchhHHhhhhhhccCCCcceEEeeecCCCcEEE
Q psy2517 453 WKIFSP--EDEIIKICPIPEPEWRVTHCNEKYEVCSSYSRLLIVPNSITDDVIKESAKYRDLGRFPVLCYKYEAKSSILV 530 (613)
Q Consensus 453 W~lyd~--~~Ef~R~~~~~~~~WRis~iN~~y~~C~tYP~~lvVP~~i~D~~L~~~a~fRs~~R~Pvlsw~h~~~ga~L~ 530 (613)
|++|+| ..|++|| |+|++.||||.+|++|++|+|||..++||++|+|++|..+|.||+++|+||++|+|+.+||+|.
T Consensus 165 ~~l~~P~~~~E~~r~-g~~n~~WRIs~iNs~Y~LC~SYP~~l~VP~~isD~eL~~VasFRsr~RlPvlsw~Hp~sgAvIa 243 (717)
T KOG4471|consen 165 WKLYDPMFKNEYRRQ-GLPNESWRISKINSNYKLCDSYPAKLVVPKSISDEELLRVASFRSRCRLPVLSWRHPESGAVIA 243 (717)
T ss_pred ccccChhhHhHHHhc-CCChhheeeecccccccccccCccceEeccccCHHHHHHHhhhhhcCccceEEEEcCCCCceEE
Confidence 999999 9999986 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHHhC------CCCeEEEecCchHHHHHHhhcCCCccCCCCccCcceeecCcCChhHH
Q psy2517 531 RSSQPLPGPTAKRCKADEKLLNGYLKS------GKKGIIIDTRTQTLAQSAKNKGGGMELEMFYPQWRRVHKPVDKHTVL 604 (613)
Q Consensus 531 R~SQPl~G~~~~r~~~De~ll~~i~~~------~~~~~IiD~R~~~nA~an~a~GgG~E~~~~Y~~~~~~f~~I~nihvm 604 (613)
|||||+||..++|+.+||+||.+|.+. .+|++|+||||+.||+||+|||||||++++|||++.+|++|+|||||
T Consensus 244 RcSQPlVG~~g~Rn~~DEkll~~i~~a~A~~~e~~KL~I~DARp~~nAvANkAkGGG~Es~~~Y~naEi~Fl~i~NIH~m 323 (717)
T KOG4471|consen 244 RCSQPLVGWSGKRNKDDEKLLQAIADANAQDGERRKLLIVDARPYTNAVANKAKGGGYESEEAYPNAEIVFLGIHNIHVM 323 (717)
T ss_pred ecCCcccchhcccccchHHHHHHHHHhcccccccceEEEEecccchhhhhccccCCCccChhccccceEEEeecchhHHH
Confidence 999999999999999999999999763 34899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q psy2517 605 LDSLAKFVE 613 (613)
Q Consensus 605 r~Sl~Kl~e 613 (613)
|+||+|+.|
T Consensus 324 R~s~~~~k~ 332 (717)
T KOG4471|consen 324 RESLRKLKE 332 (717)
T ss_pred HHHHHhHHH
Confidence 999999864
No 5
>KOG1089|consensus
Probab=100.00 E-value=2.1e-58 Score=503.57 Aligned_cols=233 Identities=44% Similarity=0.768 Sum_probs=219.3
Q ss_pred hhhhhhhhccC---CCCCCceEEeeecCceEEEEeecCCchhhHHHHHHHHHhcccccccccccccCCCccccCC--Ccc
Q psy2517 380 MAIDMVERKLN---KESPGGVIIIKCKDFRVIMLGIDNTDHFNCIAQSLEDIVNMEVLKYKYAFYYRPLYPILED--GWK 454 (613)
Q Consensus 380 psV~~VErKL~---k~s~g~~l~I~CKDfR~l~f~f~~~~~~~~v~~sL~~ls~p~~~~~lfAF~y~p~~~~~~~--gW~ 454 (613)
..++.+++... ....|+.+.|+|||||+++|.++...+|++|+.+++.++++.++..+|||.|.|.....++ ||+
T Consensus 59 ~~i~~v~k~~~~~~~~~~g~~i~l~CK~~~~~~~~i~~~~e~~~v~~s~~~ls~~~~~~~ly~f~y~~~~~~~~~~~gw~ 138 (573)
T KOG1089|consen 59 DNIDSVEKDPSTFKNSTSGGPITLKCKDFRVISFLIPDDLECRDVYSSIENLSNIDSILQLYAFFYAPNFQNLEDPSGWK 138 (573)
T ss_pred chHhhhccCcceeeccccCCchhhhhhcceEEEEeccchHHHHHHHHHHHHhcccCccccccccccCCcccccccccCce
Confidence 35667776422 1256889999999999999999999999999999999999999999999999999887766 999
Q ss_pred ccCcHHHHHHHCCC--CCCCcEEEeccCCCccccCCCcceeeccccchhHHhhhhhhccCCCcceEEeeecCCCcEEEcc
Q psy2517 455 IFSPEDEIIKICPI--PEPEWRVTHCNEKYEVCSSYSRLLIVPNSITDDVIKESAKYRDLGRFPVLCYKYEAKSSILVRS 532 (613)
Q Consensus 455 lyd~~~Ef~R~~~~--~~~~WRis~iN~~y~~C~tYP~~lvVP~~i~D~~L~~~a~fRs~~R~Pvlsw~h~~~ga~L~R~ 532 (613)
+|++++||+|+ |+ ++..||+|+||++|++|+|||..++||++++|+.|+++|+||++|||||++|.|+.||++|+||
T Consensus 139 ~fd~~~ef~r~-~~~~~~~~w~~ssvNe~y~vC~tyP~~l~VPksitd~~l~~~~~fRs~gR~Pvl~y~h~~n~aal~R~ 217 (573)
T KOG1089|consen 139 MFDPESEFDRM-GIRKGNSHWRISSVNENYEVCPTYPEKLIVPKSITDEDLKKSAKFRSGGRFPVLSYSHKENGAALMRS 217 (573)
T ss_pred ecchHhHHHHH-hccCCCCCceEEecCCCeeeccCCCceeEecCCCchHhhhccchhccCCccceEEEEeccCCcceeee
Confidence 99999999997 67 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHhCCC---CeEEEecCchHHHHHHhhcCCCccCCCCccCcceeecCcCChhHHHHHHH
Q psy2517 533 SQPLPGPTAKRCKADEKLLNGYLKSGK---KGIIIDTRTQTLAQSAKNKGGGMELEMFYPQWRRVHKPVDKHTVLLDSLA 609 (613)
Q Consensus 533 SQPl~G~~~~r~~~De~ll~~i~~~~~---~~~IiD~R~~~nA~an~a~GgG~E~~~~Y~~~~~~f~~I~nihvmr~Sl~ 609 (613)
|||++|+..+||.+||+|++++.+.+. +.+|+||||++|||||+|+||||||+++|+||+++|++||||||||+||+
T Consensus 218 SqPL~g~~~~Rc~~DE~il~ai~k~~~~~~~~yivDtRp~~nA~an~A~g~g~En~~~Y~~~~~~f~~i~nIh~v~~s~~ 297 (573)
T KOG1089|consen 218 SQPLSGFIAKRCREDEKILEAILKANPNSKRGYIVDTRPRTNAMANRAKGGGYENEDNYSQWKFLFLGIENIHVVRSSLQ 297 (573)
T ss_pred cCCCcccccccchHHHHHHHHHHhhCcCccceeEEeccchhhHHHHHhhcCCCcchhhHHHHHHHhcCcchHHHHHHHHH
Confidence 999999999999999999999999875 79999999999999999999999999999999999999999999999999
Q ss_pred HhhC
Q psy2517 610 KFVE 613 (613)
Q Consensus 610 Kl~e 613 (613)
||+|
T Consensus 298 kl~e 301 (573)
T KOG1089|consen 298 KLLE 301 (573)
T ss_pred HHHH
Confidence 9986
No 6
>KOG1090|consensus
Probab=100.00 E-value=1.4e-46 Score=418.40 Aligned_cols=204 Identities=33% Similarity=0.571 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHhhcCC----CCCChhhhccccCCCchHHHHHHHHHHHHHHHHHhhhCCceEEEEcCCCCCcchhHHH
Q psy2517 166 FNCIAQSLEDIVNMASND----VTCSMDKWLSRLDGSSWMSNIKEILSCAHYVAQCLDQEGTTVLVHGSEGLDSTLVITS 241 (613)
Q Consensus 166 ~~~v~~S~~~Ll~~~c~~----~~~~~~~wl~~le~s~Wl~~v~~~L~~a~~ia~~l~~~~~sVlvh~sdGwD~t~qvsS 241 (613)
.+.++.|++||++ +|.+ +.++...|+..+|.|.||..|+.+|+.+..|++.|+-.++||+|--+||||-|+|++|
T Consensus 1217 ~rq~r~sfkkl~k-aC~p~~~~~e~~~~SFl~s~e~S~WlqqIskllqlS~~VV~Lldl~~SSV~v~LEdG~dITtqlsS 1295 (1732)
T KOG1090|consen 1217 ERQVRASFKKLLK-ACVPGCPAAEPSPASFLESLEDSEWLQQISKLLQLSVLVVELLDLSNSSVLVGLEDGWDITTQLSS 1295 (1732)
T ss_pred HHHHHHHHHHHHH-HhCCCCccCCCCHHHHHHHHhhcchHHHHHHHHhhhhhhhhhhhccCCeEEEEeccCchhhhhhhh
Confidence 3678999999985 8855 3446689999999999999999999999999999998999999999999999999999
Q ss_pred HHHHhhCccchhhhhhhhhhhhhhhhcCCCccccccCCCCCCCCCCCCCchhhHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q psy2517 242 LVQVMLNPECRTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLYQLQNQFVCSFEFSADFLILI 321 (613)
Q Consensus 242 Laql~lDPyyRTi~GF~~LIeKEWi~~GH~F~~R~~~~~~~~~~~~~~sPiFl~FLDcv~Ql~~qfP~~FEFne~~L~~l 321 (613)
|+||++||||||++||++|+||||++|||.| .|- ....+|+|+||||||+|+.+|||.+||||..||.+|
T Consensus 1296 l~QLlsDPyYRtldGFrvLVEKEWLaFGHrF-Hr~---------~~~fsPsFlqFLDcVhQi~~QfPmaFEFs~FYl~FL 1365 (1732)
T KOG1090|consen 1296 LSQLLSDPYYRTLDGFRVLVEKEWLAFGHRF-HRD---------TETFSPSFLQFLDCVHQISQQFPMAFEFSYFYLSFL 1365 (1732)
T ss_pred hhhhcCChhhhcccchhhhhhhhhhhhcchh-ccc---------ccccCchHHHHHHHHHHHHHhccchhhhHHHHHHHH
Confidence 9999999999999999999999999999999 562 256899999999999999999999999999999999
Q ss_pred HHhhcccCcCcccCCCHHHHHHhccC-------------cccccccccccC-ccccccccCccccccc-chhhh
Q psy2517 322 FEHSYFSPYGTFLLNSEKERVDENLS-------------TRTSSLWSYVNR-PDLLAQLKNPLYQVNN-NLLHM 380 (613)
Q Consensus 322 ~~h~ys~~fgtFl~nse~eR~~~~~~-------------~~t~SlW~~i~~-~~~~~~f~Np~Y~~~~-~vlwp 380 (613)
++|.-||+|-|||.|||.||.+.++. ..|.|+|+||.. +...+-|.|.+|.|.. .++.|
T Consensus 1366 aYHsvs~rFRTFl~Dce~eR~esg~~~~ek~er~~~p~nr~~~svweyI~r~~k~Tp~FyN~lYa~~~s~ilrP 1439 (1732)
T KOG1090|consen 1366 AYHSVSGRFRTFLLDCEEERIESGLLYEEKGERRGQPLNRATISVWEYIDRLSKRTPAFYNYLYAPEDSEILRP 1439 (1732)
T ss_pred hhhccchhhhhhhccccHHhhhhhhhHHhhccccCCCcccccchHHHHHHHhcccChhHHHHhhCcCCcccccc
Confidence 99999999999999999999987652 247899999964 3345799999999987 45555
No 7
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=100.00 E-value=9e-46 Score=394.30 Aligned_cols=177 Identities=40% Similarity=0.697 Sum_probs=131.8
Q ss_pred cccccccCCCcccc---CCCccccCcHHHHHHHCCCCCCC-cEEEeccCCCccccCCCcceeeccccchhHHhhhhhhcc
Q psy2517 436 YKYAFYYRPLYPIL---EDGWKIFSPEDEIIKICPIPEPE-WRVTHCNEKYEVCSSYSRLLIVPNSITDDVIKESAKYRD 511 (613)
Q Consensus 436 ~lfAF~y~p~~~~~---~~gW~lyd~~~Ef~R~~~~~~~~-WRis~iN~~y~~C~tYP~~lvVP~~i~D~~L~~~a~fRs 511 (613)
+||||.|+|..... .+||++||++.||+|+ |++.+. |||+.+|++|++|+|||..+|||++++|+.|.++|+||+
T Consensus 1 ~LFAF~y~~~~~~~~~~~~~~~~~d~~~E~~R~-g~~~~~~Wri~~~N~~y~~c~tYP~~lvVP~~i~D~~l~~~a~~r~ 79 (353)
T PF06602_consen 1 DLFAFSYQPPKSELKSKSNGWKIYDWEREFERL-GLPSDSSWRISDINSNYELCPTYPSLLVVPSSISDEELKKSAKFRS 79 (353)
T ss_dssp TSGGGT---S-SSHHHHH-HHCT--HHHHHHHT-T-SCSS-EEEEGCCTTSSS-TTS-SSEEEETTS-HHHHHHHHHHBG
T ss_pred CcccccCCCCCCcccccCCCccccCHHHHHHHh-CCCCCCCeeEEEEcCCCCccccccceEEEEEEecHHHHHHhhhhcc
Confidence 58999999987644 2799999999999997 666654 999999999999999999999999999999999999999
Q ss_pred CCCcceEEeeecCCCcEEEcccCCCCCCCCCCcHHHHHHHHHHH------hCCCCeEEEecCchHHHHHHhhcCCCccCC
Q psy2517 512 LGRFPVLCYKYEAKSSILVRSSQPLPGPTAKRCKADEKLLNGYL------KSGKKGIIIDTRTQTLAQSAKNKGGGMELE 585 (613)
Q Consensus 512 ~~R~Pvlsw~h~~~ga~L~R~SQPl~G~~~~r~~~De~ll~~i~------~~~~~~~IiD~R~~~nA~an~a~GgG~E~~ 585 (613)
++||||++|+|+.||++|+|||||++|+..+||.+||+||.++. .++++++|+|+||++||++|+++|||+|++
T Consensus 80 ~~R~Pv~~W~~~~~~a~L~Rssqp~~g~~~~r~~~De~ll~~~i~~~~~~~~~~~~~i~D~R~~~~a~~n~~~G~G~E~~ 159 (353)
T PF06602_consen 80 KGRFPVLSWRHPENGAVLLRSSQPLVGLSNSRSKEDEKLLQAAISSSKSNPSKSKLVIVDARPKLNALANRAKGGGYENE 159 (353)
T ss_dssp GG---EEEEE-TTT--EEEEEE-B--TTTT---HHHHHHH-HHH--HHHSTT-SSEEEEE-SSCHHHHHHHHTT-S---T
T ss_pred CCccceEEEeecCCCeEEEEeccccccccccCchhhHHHHHHHHhhcccccccCceEEEcchhhhhhhhhhhhccCCccc
Confidence 99999999999999999999999999999999999999996544 345779999999999999999999999999
Q ss_pred CCccCcceeecCcCChhHHHHHHHHhhC
Q psy2517 586 MFYPQWRRVHKPVDKHTVLLDSLAKFVE 613 (613)
Q Consensus 586 ~~Y~~~~~~f~~I~nihvmr~Sl~Kl~e 613 (613)
++|++|+++|++|+|||+||+|+.||.+
T Consensus 160 ~~Y~~~~i~fl~i~nih~vr~s~~kl~~ 187 (353)
T PF06602_consen 160 SNYPNCEIIFLNIPNIHSVRDSFQKLRE 187 (353)
T ss_dssp TTSTTEEEEE-----HHHHHHHHHHHHH
T ss_pred cccccceEEeeecCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999963
No 8
>KOG1090|consensus
Probab=99.33 E-value=1.1e-13 Score=157.20 Aligned_cols=56 Identities=34% Similarity=0.683 Sum_probs=50.0
Q ss_pred CCchhhHhhHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCeEEEeeccccc------chhhhcccccc
Q psy2517 18 GENWKKVKKLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCITS------SAMEFADLIPI 83 (613)
Q Consensus 18 ~~~~r~~~g~~~l~~~ew~~~gh~f~~r~~~~~~~~~~~~~~~P~fL~~~d~~~~------~~~eF~e~~~~ 83 (613)
||||||.+|||.||||||+++||.| .|-+ ...+|+||+|||||+| .+|||+..|+.
T Consensus 1302 DPyYRtldGFrvLVEKEWLaFGHrF-Hr~~---------~~fsPsFlqFLDcVhQi~~QfPmaFEFs~FYl~ 1363 (1732)
T KOG1090|consen 1302 DPYYRTLDGFRVLVEKEWLAFGHRF-HRDT---------ETFSPSFLQFLDCVHQISQQFPMAFEFSYFYLS 1363 (1732)
T ss_pred Chhhhcccchhhhhhhhhhhhcchh-cccc---------cccCchHHHHHHHHHHHHHhccchhhhHHHHHH
Confidence 6799999999999999999999999 4432 4588999999999998 89999998873
No 9
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=96.36 E-value=0.013 Score=50.48 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=47.5
Q ss_pred CceEEEEcCCCCCcchhHHHHHHHhhCccchhhhhhhhhhhhhhhhcCCCccccccCCCCCCCCCCCCCchhhHHHHHHH
Q psy2517 222 GTTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLY 301 (613)
Q Consensus 222 ~~sVlvh~sdGwD~t~qvsSLaql~lDPyyRTi~GF~~LIeKEWi~~GH~F~~R~~~~~~~~~~~~~~sPiFl~FLDcv~ 301 (613)
+.+|+|||+.|.+||..++++..++..+...+ ....+++++.
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~ 80 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTFVALDILLQQLESET--------------------------------------GEVDIFQTVK 80 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHHHhcC--------------------------------------CCCCHHHHHH
Confidence 67999999999999999998887776555432 2346789999
Q ss_pred HHhhhCCCCCCCCHHHHHHHH
Q psy2517 302 QLQNQFVCSFEFSADFLILIF 322 (613)
Q Consensus 302 Ql~~qfP~~FEFne~~L~~l~ 322 (613)
++.+|-|.+++-.+. ..++.
T Consensus 81 ~ir~~r~~~~~~~~q-~~~~~ 100 (105)
T smart00012 81 ELRKQRPGMVQTFEQ-YLFLY 100 (105)
T ss_pred HHHhhhhhhCCcHHH-HHHHH
Confidence 999999999994444 44443
No 10
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=96.36 E-value=0.013 Score=50.48 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=47.5
Q ss_pred CceEEEEcCCCCCcchhHHHHHHHhhCccchhhhhhhhhhhhhhhhcCCCccccccCCCCCCCCCCCCCchhhHHHHHHH
Q psy2517 222 GTTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLY 301 (613)
Q Consensus 222 ~~sVlvh~sdGwD~t~qvsSLaql~lDPyyRTi~GF~~LIeKEWi~~GH~F~~R~~~~~~~~~~~~~~sPiFl~FLDcv~ 301 (613)
+.+|+|||+.|.+||..++++..++..+...+ ....+++++.
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~ 80 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTFVALDILLQQLESET--------------------------------------GEVDIFQTVK 80 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHHHhcC--------------------------------------CCCCHHHHHH
Confidence 67999999999999999998887776555432 2346789999
Q ss_pred HHhhhCCCCCCCCHHHHHHHH
Q psy2517 302 QLQNQFVCSFEFSADFLILIF 322 (613)
Q Consensus 302 Ql~~qfP~~FEFne~~L~~l~ 322 (613)
++.+|-|.+++-.+. ..++.
T Consensus 81 ~ir~~r~~~~~~~~q-~~~~~ 100 (105)
T smart00404 81 ELRKQRPGMVQTFEQ-YLFLY 100 (105)
T ss_pred HHHhhhhhhCCcHHH-HHHHH
Confidence 999999999994444 44443
No 11
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=93.87 E-value=0.08 Score=50.75 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCcchhHHHHHHHhhC
Q psy2517 223 TTVLVHGSEGLDSTLVITSLVQVMLN 248 (613)
Q Consensus 223 ~sVlvh~sdGwD~t~qvsSLaql~lD 248 (613)
.+||+||+-|-|||..+++|.+.++.
T Consensus 125 ~p~l~HC~aGKDRTG~~~alll~~lG 150 (164)
T PF13350_consen 125 GPVLFHCTAGKDRTGVVAALLLSLLG 150 (164)
T ss_dssp --EEEE-SSSSSHHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCccHHHHHHHHHHHcC
Confidence 59999999999999999999988874
No 12
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=92.34 E-value=0.23 Score=45.75 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=23.4
Q ss_pred HHHHHHHhhhCCceEEEEcCCCCCcchhHHH
Q psy2517 211 AHYVAQCLDQEGTTVLVHGSEGLDSTLVITS 241 (613)
Q Consensus 211 a~~ia~~l~~~~~sVlvh~sdGwD~t~qvsS 241 (613)
+...++....+|.+|||||..|.+||+.+++
T Consensus 67 ~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 97 (138)
T smart00195 67 AVEFIEDAEKKGGKVLVHCQAGVSRSATLII 97 (138)
T ss_pred HHHHHHHHhcCCCeEEEECCCCCchHHHHHH
Confidence 3333333446889999999999999998775
No 13
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=91.68 E-value=0.36 Score=44.07 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.7
Q ss_pred hhCCceEEEEcCCCCCcchhHHH
Q psy2517 219 DQEGTTVLVHGSEGLDSTLVITS 241 (613)
Q Consensus 219 ~~~~~sVlvh~sdGwD~t~qvsS 241 (613)
..+|.+|+|||.+|.+||..+++
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~ 100 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVI 100 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHH
Confidence 34688999999999999987765
No 14
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=89.98 E-value=0.42 Score=43.53 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.9
Q ss_pred hhCCceEEEEcCCCCCcchhHHH
Q psy2517 219 DQEGTTVLVHGSEGLDSTLVITS 241 (613)
Q Consensus 219 ~~~~~sVlvh~sdGwD~t~qvsS 241 (613)
..+|..|||||..|-+||+.+++
T Consensus 70 ~~~~~~VlVHC~~G~~RS~~v~~ 92 (133)
T PF00782_consen 70 ISEGGKVLVHCKAGLSRSGAVAA 92 (133)
T ss_dssp HHTTSEEEEEESSSSSHHHHHHH
T ss_pred hcccceeEEEeCCCcccchHHHH
Confidence 45889999999999999987764
No 15
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=89.57 E-value=0.36 Score=46.90 Aligned_cols=60 Identities=25% Similarity=0.352 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCceEEEEcCCCCCcchhHHHHHHHhhCccchhhhhhhh-hhhhhhhhcC
Q psy2517 200 WMSNIKEILSCAHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQS-LIEREWLQAG 269 (613)
Q Consensus 200 Wl~~v~~~L~~a~~ia~~l~~~~~sVlvh~sdGwD~t~qvsSLaql~lDPyyRTi~GF~~-LIeKEWi~~G 269 (613)
|...-...+..|..+. ++....+|||||.+|-|||..|++. ||-+.|.-. =|-.|+..|+
T Consensus 71 ~~~~~~~~v~~aL~~i--ld~~n~PvLiHC~~G~~rTG~vvg~--------lRk~Q~W~~~~i~~Ey~~f~ 131 (164)
T PF03162_consen 71 WVPISEEQVAEALEII--LDPRNYPVLIHCNHGKDRTGLVVGC--------LRKLQGWSLSSIFDEYRRFA 131 (164)
T ss_dssp G----HHHHHHHHHHH--H-GGG-SEEEE-SSSSSHHHHHHHH--------HHHHTTB-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHH--hCCCCCCEEEEeCCCCcchhhHHHH--------HHHHcCCCHHHHHHHHHHhc
Confidence 5555555555555442 4556789999999999999998875 566666543 4556777765
No 16
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=88.03 E-value=0.97 Score=46.76 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=34.9
Q ss_pred CCceEEEEcCCCCCcchhHHHHHHHhhCccchhhhhhhhhhhhhhhhcC
Q psy2517 221 EGTTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAG 269 (613)
Q Consensus 221 ~~~sVlvh~sdGwD~t~qvsSLaql~lDPyyRTi~GF~~LIeKEWi~~G 269 (613)
++.+||+||+.|-|||..+++|.=.++++..++ |-.|.+.++
T Consensus 135 e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~-------v~~dyl~~~ 176 (249)
T COG2365 135 ENGPVLIHCTAGKDRTGLVAALYRKLVGGSDET-------VAADYLLTN 176 (249)
T ss_pred ccCCEEEecCCCCcchHHHHHHHHHHhCCchhH-------HHHHHHHcC
Confidence 458999999999999999999998888888886 455666554
No 17
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=81.77 E-value=0.51 Score=38.64 Aligned_cols=60 Identities=25% Similarity=0.392 Sum_probs=30.0
Q ss_pred hhccccccccccceeec--CCCc--cCCCCCccccccceeEEEecccCcc--eeeeeechhhHHHh
Q psy2517 76 EFADLIPISKLDGVTLS--GACY--KTPVDGTLCMTGHHLFLSSRKQGVE--ELWLLHMAIDMVER 135 (613)
Q Consensus 76 eF~e~~~~~~~d~v~l~--~~~~--~~~~~GtlcitghhLi~s~r~~~~~--elwll~~~Id~v~k 135 (613)
+|...+.+|.=|.++-. |... ..+..|+|+||.+||.|.+...+.. .+-|+..-|..|+|
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k 67 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEK 67 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEE
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEE
Confidence 56777777766665432 2211 2368899999999999998655443 35555566666654
No 18
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=80.77 E-value=2.5 Score=43.26 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=43.1
Q ss_pred CceEEEEcCCCCCcchhHHHHHHHhhCccchhhhhhhhhhhhhhhhcCCCccccccCCCCCCCCCCCCCchhhHHHHHHH
Q psy2517 222 GTTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLY 301 (613)
Q Consensus 222 ~~sVlvh~sdGwD~t~qvsSLaql~lDPyyRTi~GF~~LIeKEWi~~GH~F~~R~~~~~~~~~~~~~~sPiFl~FLDcv~ 301 (613)
+.+|+|||++|-.||..++++.-++. . +.-+. . .-+.+.|-
T Consensus 193 ~~pivVHC~~G~gRsg~f~a~~~~~~------------~-----l~~~~-----------------~-----v~v~~~v~ 233 (258)
T smart00194 193 TGPIVVHCSAGVGRTGTFIAIDILLQ------------Q-----LEAGK-----------------E-----VDIFEIVK 233 (258)
T ss_pred CCCEEEEeCCCCCccchhhHHHHHHH------------H-----HHHcC-----------------C-----CCHHHHHH
Confidence 67999999999999999998765542 0 00000 0 23577888
Q ss_pred HHhhhCCCCCCCCHHHHHHHHHh
Q psy2517 302 QLQNQFVCSFEFSADFLILIFEH 324 (613)
Q Consensus 302 Ql~~qfP~~FEFne~~L~~l~~h 324 (613)
+|.+|-|.+++ +..-+.++..-
T Consensus 234 ~lR~~R~~~v~-~~~Qy~f~~~~ 255 (258)
T smart00194 234 ELRSQRPGMVQ-TEEQYIFLYRA 255 (258)
T ss_pred HHHhccccccC-CHHHHHHHHHH
Confidence 88888888886 66666666543
No 19
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=80.07 E-value=3.7 Score=39.84 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.8
Q ss_pred hCCceEEEEcCCCCCcchhHHHHH
Q psy2517 220 QEGTTVLVHGSEGLDSTLVITSLV 243 (613)
Q Consensus 220 ~~~~sVlvh~sdGwD~t~qvsSLa 243 (613)
..|..|+|||..|-.||+-+++..
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~y 119 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALA 119 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999888663
No 20
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=79.94 E-value=3 Score=41.82 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=42.4
Q ss_pred CCceEEEEcCCCCCcchhHHHHHHHhhCccchhhhhhhhhhhhhhhhcCCCccccccCCCCCCCCCCCCCchhhHHHHHH
Q psy2517 221 EGTTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCL 300 (613)
Q Consensus 221 ~~~sVlvh~sdGwD~t~qvsSLaql~lDPyyRTi~GF~~LIeKEWi~~GH~F~~R~~~~~~~~~~~~~~sPiFl~FLDcv 300 (613)
.+.+|+|||++|-.||..++++.-++.- ++++ | -.-+.+++
T Consensus 165 ~~~pivVHC~~G~gRsg~~~a~~~~~~~------------~~~~----~-----------------------~~~~~~~v 205 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTFIAIDILLQR------------LEAE----G-----------------------VVDIFQTV 205 (231)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHH------------HHhc----C-----------------------CCCHHHHH
Confidence 3679999999999999999876544321 0110 0 01256788
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHh
Q psy2517 301 YQLQNQFVCSFEFSADFLILIFEH 324 (613)
Q Consensus 301 ~Ql~~qfP~~FEFne~~L~~l~~h 324 (613)
-+|.+|-|.+++ +..-..++.+-
T Consensus 206 ~~iR~~R~~~v~-~~~Qy~f~~~~ 228 (231)
T cd00047 206 KELRSQRPGMVQ-TEEQYIFLYRA 228 (231)
T ss_pred HHHHhccccccC-CHHHHHHHHHH
Confidence 888888888776 66555555543
No 21
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=79.50 E-value=3.2 Score=42.93 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=49.7
Q ss_pred eeEEeecCceEEEecccCchhHHHHHHHHHHH-----HHhhcCCCCCChhhhcc-cc--------CC-CchHHHHHHHHH
Q psy2517 145 VIIIKCKDFRVIMLGIDNTDHFNCIAQSLEDI-----VNMASNDVTCSMDKWLS-RL--------DG-SSWMSNIKEILS 209 (613)
Q Consensus 145 ~l~~kckn~~i~~l~i~~i~~~~~v~~S~~~L-----l~~~c~~~~~~~~~wl~-~l--------e~-s~Wl~~v~~~L~ 209 (613)
+..+..++++++-+|-|.-..+..-..-+++. + .+|.... ..+.|.. .+ +. .-=.+.|...+
T Consensus 84 ~~~ie~~~~rfLi~~~P~~~~~~~yl~eLk~~gV~~lV-rlcE~~Y-d~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l- 160 (241)
T PTZ00393 84 PTKIEHGKIKILILDAPTNDLLPLYIKEMKNYNVTDLV-RTCERTY-NDGEITSAGINVHELIFPDGDAPTVDIVSNWL- 160 (241)
T ss_pred chhhccCceeEEEeCCCCHHHHHHHHHHHHHcCCCEEE-ECCCCCC-CHHHHHHcCCeEEEeecCCCCCCCHHHHHHHH-
Confidence 55667789999999999876543222222222 2 3443321 1112111 01 00 00012222222
Q ss_pred HHHHHHHHhhhCCceEEEEcCCCCCcchhHHHHH
Q psy2517 210 CAHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLV 243 (613)
Q Consensus 210 ~a~~ia~~l~~~~~sVlvh~sdGwD~t~qvsSLa 243 (613)
.+++.....|..|+|||..|-.||..+++..
T Consensus 161 ---~~i~~~l~~g~~VaVHC~AGlGRTGtl~Aay 191 (241)
T PTZ00393 161 ---TIVNNVIKNNRAVAVHCVAGLGRAPVLASIV 191 (241)
T ss_pred ---HHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 2223333578899999999999999887654
No 22
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=77.93 E-value=3.4 Score=40.78 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=22.5
Q ss_pred hhCCceEEEEcCCCCCcchhHHHHHHH
Q psy2517 219 DQEGTTVLVHGSEGLDSTLVITSLVQV 245 (613)
Q Consensus 219 ~~~~~sVlvh~sdGwD~t~qvsSLaql 245 (613)
.....+++|||++|-.||..++++.-+
T Consensus 167 ~~~~~pivVhc~~G~gRsg~f~~~~~~ 193 (235)
T PF00102_consen 167 DDPNGPIVVHCSDGVGRSGTFCAIDIL 193 (235)
T ss_dssp STTSSEEEEESSSSSHHHHHHHHHHHH
T ss_pred cCCccceEeecccccccccccccchhh
Confidence 446789999999999999999876544
No 23
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=77.35 E-value=2.9 Score=44.48 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=40.7
Q ss_pred ceEEEEcCCCCCcchhHHHHHHHhhCccchhhhhhhhhhhhhhhhcCCCccccccCCCCCCCCCCCCCchhhHHHHHHHH
Q psy2517 223 TTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLYQ 302 (613)
Q Consensus 223 ~sVlvh~sdGwD~t~qvsSLaql~lDPyyRTi~GF~~LIeKEWi~~GH~F~~R~~~~~~~~~~~~~~sPiFl~FLDcv~Q 302 (613)
.+|+||||+|-.||..++++--+|. .+++ ...-+ ..+.|-+
T Consensus 230 ~PIvVHCsaGvGRTGtF~aid~~i~------------~~~~-----------------------~~~v~----v~~~V~~ 270 (303)
T PHA02742 230 PPILVHCSAGLDRAGAFCAIDICIS------------KYNE-----------------------RAIIP----LLSIVRD 270 (303)
T ss_pred CCeEEECCCCCchhHHHHHHHHHHH------------HHHh-----------------------cCCCC----HHHHHHH
Confidence 6999999999999999998754332 1111 01112 3588999
Q ss_pred HhhhCCCCCCCCHHHHHHHHH
Q psy2517 303 LQNQFVCSFEFSADFLILIFE 323 (613)
Q Consensus 303 l~~qfP~~FEFne~~L~~l~~ 323 (613)
|.+|-|...+ +..-..++.+
T Consensus 271 lR~qR~~~Vq-t~~QY~F~y~ 290 (303)
T PHA02742 271 LRKQRHNCLS-LPQQYIFCYF 290 (303)
T ss_pred HHhhcccccC-CHHHHHHHHH
Confidence 9999999888 4443344443
No 24
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=73.20 E-value=7.2 Score=38.32 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=25.5
Q ss_pred HHHHHHhhhCCceEEEEcCCCCCcchhHHHHHHHhhCc
Q psy2517 212 HYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLNP 249 (613)
Q Consensus 212 ~~ia~~l~~~~~sVlvh~sdGwD~t~qvsSLaql~lDP 249 (613)
-.+...|. .|..|+|||--|-.||..|.+---+.|.+
T Consensus 124 ~eL~~~L~-~g~~V~vHC~GGlGRtGlvAAcLLl~L~~ 160 (168)
T PF05706_consen 124 EELAARLE-NGRKVLVHCRGGLGRTGLVAACLLLELGD 160 (168)
T ss_dssp HHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHH-S
T ss_pred HHHHHHHH-cCCEEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 35666675 78999999999999999988766555543
No 25
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=72.70 E-value=6.7 Score=41.74 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCCcchhHHHHHH
Q psy2517 222 GTTVLVHGSEGLDSTLVITSLVQ 244 (613)
Q Consensus 222 ~~sVlvh~sdGwD~t~qvsSLaq 244 (613)
..+++||||+|-.||..++++--
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi 243 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDI 243 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHH
Confidence 46999999999999999997653
No 26
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=71.25 E-value=7.1 Score=41.95 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=41.3
Q ss_pred ceEEEEcCCCCCcchhHHHHHHHhhCccchhhhhhhhhhhhhhhhcCCCccccccCCCCCCCCCCCCCchhhHHHHHHHH
Q psy2517 223 TTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLYQ 302 (613)
Q Consensus 223 ~sVlvh~sdGwD~t~qvsSLaql~lDPyyRTi~GF~~LIeKEWi~~GH~F~~R~~~~~~~~~~~~~~sPiFl~FLDcv~Q 302 (613)
.+++||||+|-.||..+++|--++- .++++ + . +-..++|.+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~------------~l~~~-----~--------~--------------vdv~~~V~~ 288 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALE------------QLEKE-----K--------E--------------VCLGEIVLK 288 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHH------------HHHhc-----C--------C--------------CCHHHHHHH
Confidence 5999999999999999987654432 11110 0 0 124689999
Q ss_pred HhhhCCCCCCCCHHHHHHHHHh
Q psy2517 303 LQNQFVCSFEFSADFLILIFEH 324 (613)
Q Consensus 303 l~~qfP~~FEFne~~L~~l~~h 324 (613)
|.+|-|...+ +..-..++.+-
T Consensus 289 lR~qR~~~Vq-t~~QY~F~y~~ 309 (323)
T PHA02746 289 IRKQRHSSVF-LPEQYAFCYKA 309 (323)
T ss_pred HHhcccccCC-CHHHHHHHHHH
Confidence 9999999888 44444444433
No 27
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=70.21 E-value=6.5 Score=36.73 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=23.9
Q ss_pred hhhCCceEEEEcCCCCCcchhHHHHHHHhhC
Q psy2517 218 LDQEGTTVLVHGSEGLDSTLVITSLVQVMLN 248 (613)
Q Consensus 218 l~~~~~sVlvh~sdGwD~t~qvsSLaql~lD 248 (613)
++....+||+||..|- ||..+.+|.+..+.
T Consensus 82 ~~~~~~pvL~HC~sG~-Rt~~l~al~~~~~g 111 (135)
T TIGR01244 82 IGAAEGPVLAYCRSGT-RSSLLWGFRQAAEG 111 (135)
T ss_pred HHhCCCCEEEEcCCCh-HHHHHHHHHHHHcC
Confidence 3334578999999999 99999988876643
No 28
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=69.22 E-value=2.6 Score=44.14 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=31.1
Q ss_pred HHHHHhh---hCCceEEEEcCCCCCcchhHHHHHHHhhCcc
Q psy2517 213 YVAQCLD---QEGTTVLVHGSEGLDSTLVITSLVQVMLNPE 250 (613)
Q Consensus 213 ~ia~~l~---~~~~sVlvh~sdGwD~t~qvsSLaql~lDPy 250 (613)
.+..++. .++.+++||||-|-.||.-..+|-+||.+|-
T Consensus 206 ~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~ 246 (302)
T COG5599 206 EVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPN 246 (302)
T ss_pred HHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccc
Confidence 3444554 2568999999999999999999999998885
No 29
>KOG0793|consensus
Probab=68.22 E-value=4.4 Score=47.37 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCceEEEEcCCCCCcchhHHHHHHHh
Q psy2517 202 SNIKEILSCAHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVM 246 (613)
Q Consensus 202 ~~v~~~L~~a~~ia~~l~~~~~sVlvh~sdGwD~t~qvsSLaql~ 246 (613)
..-+++|+.-..|-+|-.-..++|+||||||-.||...+.+-+++
T Consensus 907 asarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl 951 (1004)
T KOG0793|consen 907 ASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVL 951 (1004)
T ss_pred cchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHH
Confidence 457899999999988887677899999999999999888666554
No 30
>PHA02738 hypothetical protein; Provisional
Probab=68.09 E-value=8 Score=41.49 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=41.4
Q ss_pred ceEEEEcCCCCCcchhHHHHHHHhhCccchhhhhhhhhhhhhhhhcCCCccccccCCCCCCCCCCCCCchhhHHHHHHHH
Q psy2517 223 TTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLYQ 302 (613)
Q Consensus 223 ~sVlvh~sdGwD~t~qvsSLaql~lDPyyRTi~GF~~LIeKEWi~~GH~F~~R~~~~~~~~~~~~~~sPiFl~FLDcv~Q 302 (613)
.+++||||+|-.||..+++|.-+|. - +.-++ .- -..+.|.+
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi~i~-~----------------~~~~~------------------~v----dv~~~V~~ 268 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDISIS-R----------------FDACA------------------TV----SIPSIVSS 268 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHHHHH-H----------------HHhcC------------------Cc----CHHHHHHH
Confidence 5899999999999999987764432 0 00010 01 12478889
Q ss_pred HhhhCCCCCCCCHHHHHHHHHhh
Q psy2517 303 LQNQFVCSFEFSADFLILIFEHS 325 (613)
Q Consensus 303 l~~qfP~~FEFne~~L~~l~~h~ 325 (613)
|.+|-|...+ +..-..++.+-+
T Consensus 269 lR~qR~~~vq-t~~QY~F~y~~l 290 (320)
T PHA02738 269 IRNQRYYSLF-IPFQYFFCYRAV 290 (320)
T ss_pred HHhhhhhccC-CHHHHHHHHHHH
Confidence 9999998888 454444555544
No 31
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=65.76 E-value=11 Score=40.17 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCcchhHHHHHHHh
Q psy2517 223 TTVLVHGSEGLDSTLVITSLVQVM 246 (613)
Q Consensus 223 ~sVlvh~sdGwD~t~qvsSLaql~ 246 (613)
.+++||||+|-.||..++++--++
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i 253 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICL 253 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHH
Confidence 589999999999999999875443
No 32
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=65.41 E-value=10 Score=37.07 Aligned_cols=36 Identities=17% Similarity=0.437 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhhCCceEEEEcCCCCCcchhHHH
Q psy2517 205 KEILSCAHYVAQCLDQEGTTVLVHGSEGLDSTLVITS 241 (613)
Q Consensus 205 ~~~L~~a~~ia~~l~~~~~sVlvh~sdGwD~t~qvsS 241 (613)
+.+-+.+-.|...+. +|..|+|||.-|-.||.-|.+
T Consensus 89 ~~l~~~v~~i~~~~~-~g~kVvVHC~~GigRSgtvia 124 (180)
T COG2453 89 EDLDKIVDFIEEALS-KGKKVVVHCQGGIGRSGTVIA 124 (180)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEEEcCCCCchHHHHHH
Confidence 344444455666654 778999999999999976654
No 33
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=61.23 E-value=7.1 Score=34.32 Aligned_cols=60 Identities=25% Similarity=0.257 Sum_probs=37.9
Q ss_pred hhhccccccccccceeecCCCcc--CCCCCccccccceeEEEecccCcc-eeeeeechhhHHHh
Q psy2517 75 MEFADLIPISKLDGVTLSGACYK--TPVDGTLCMTGHHLFLSSRKQGVE-ELWLLHMAIDMVER 135 (613)
Q Consensus 75 ~eF~e~~~~~~~d~v~l~~~~~~--~~~~GtlcitghhLi~s~r~~~~~-elwll~~~Id~v~k 135 (613)
++-+|.+. -.-|+|-|+..... ....|++.+|.|+||+....+... .+-|.+..|..+|.
T Consensus 10 L~~~E~~~-~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~ 72 (89)
T PF11605_consen 10 LEPNETIV-YQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEY 72 (89)
T ss_dssp --TT--EE-EEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEE
T ss_pred cCCCceEE-EEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEE
Confidence 34444443 23488888754432 467999999999999996654443 57777777777763
No 34
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=57.43 E-value=5.3 Score=31.73 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=25.8
Q ss_pred CCCCccccccceeEEEecccCcc--eeeeeechhhHHHh
Q psy2517 99 PVDGTLCMTGHHLFLSSRKQGVE--ELWLLHMAIDMVER 135 (613)
Q Consensus 99 ~~~GtlcitghhLi~s~r~~~~~--elwll~~~Id~v~k 135 (613)
+..|+++||.+||.|.+...+.. .+-+....|..|||
T Consensus 21 ~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k 59 (61)
T smart00568 21 PVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEK 59 (61)
T ss_pred cccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEE
Confidence 58899999999999998554432 34445555555554
No 35
>PRK12361 hypothetical protein; Provisional
Probab=56.09 E-value=14 Score=42.44 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=22.4
Q ss_pred HHHHHHHhhhCCceEEEEcCCCCCcchhHHH
Q psy2517 211 AHYVAQCLDQEGTTVLVHGSEGLDSTLVITS 241 (613)
Q Consensus 211 a~~ia~~l~~~~~sVlvh~sdGwD~t~qvsS 241 (613)
|+...+...++|.+|+|||.-|..|++-+++
T Consensus 164 a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ 194 (547)
T PRK12361 164 AINWIHRQVRANKSVVVHCALGRGRSVLVLA 194 (547)
T ss_pred HHHHHHHHHHCCCeEEEECCCCCCcHHHHHH
Confidence 3333333345788999999999999987663
No 36
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=55.21 E-value=15 Score=33.52 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=23.0
Q ss_pred HHHHhhhCCceEEEEcCCCCCcchhHHHHHHHh
Q psy2517 214 VAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVM 246 (613)
Q Consensus 214 ia~~l~~~~~sVlvh~sdGwD~t~qvsSLaql~ 246 (613)
.++.|.....+||+||..|. |.+.+-+|+|-+
T Consensus 78 f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~l~~~~ 109 (110)
T PF04273_consen 78 FADALESLPKPVLAHCRSGT-RASALWALAQAK 109 (110)
T ss_dssp HHHHHHTTTTSEEEE-SCSH-HHHHHHHHHHH-
T ss_pred HHHHHHhCCCCEEEECCCCh-hHHHHHHHHhhh
Confidence 34456655579999999999 778888888753
No 37
>KOG2283|consensus
Probab=54.77 E-value=17 Score=40.94 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=64.6
Q ss_pred CCceeEEeecCceEEEecccCchhHHHHHHHHHHHHH-------------hhcCCCCCChhhhccccCCCchHHHHHHHH
Q psy2517 142 PGGVIIIKCKDFRVIMLGIDNTDHFNCIAQSLEDIVN-------------MASNDVTCSMDKWLSRLDGSSWMSNIKEIL 208 (613)
Q Consensus 142 ~gg~l~~kckn~~i~~l~i~~i~~~~~v~~S~~~Ll~-------------~~c~~~~~~~~~wl~~le~s~Wl~~v~~~L 208 (613)
.|+-|-+-|=.-+||.|.+|.-..=..-|++++.+.+ .+|.+.....+++..++..-+|.+|=-=-|
T Consensus 9 ~~~DLDltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L 88 (434)
T KOG2283|consen 9 GGFDLDLTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPL 88 (434)
T ss_pred ccccccceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcH
Confidence 5666777777778999888653322234556666522 566555555678999999999998854444
Q ss_pred HHHHHHHHHh----hhC-CceEEEEcCCCCCcchhHH
Q psy2517 209 SCAHYVAQCL----DQE-GTTVLVHGSEGLDSTLVIT 240 (613)
Q Consensus 209 ~~a~~ia~~l----~~~-~~sVlvh~sdGwD~t~qvs 240 (613)
...+.+++.| ... ...|+|||..|..||..+.
T Consensus 89 ~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~i 125 (434)
T KOG2283|consen 89 ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMI 125 (434)
T ss_pred HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEE
Confidence 4444444433 233 4566699999999987543
No 38
>PF15581 Imm35: Immunity protein 35
Probab=51.21 E-value=11 Score=33.17 Aligned_cols=19 Identities=37% Similarity=0.748 Sum_probs=16.1
Q ss_pred CCchhhHhhHHHHHHHHHH
Q psy2517 18 GENWKKVKKLQSLIEREWL 36 (613)
Q Consensus 18 ~~~~r~~~g~~~l~~~ew~ 36 (613)
+.==+||+|.++|||.||-
T Consensus 26 esa~~~i~~l~~lIe~eWR 44 (93)
T PF15581_consen 26 ESARRTIRNLESLIEHEWR 44 (93)
T ss_pred hHHHHHHHHHHHHHHHHHc
Confidence 3445799999999999996
No 39
>KOG2836|consensus
Probab=47.89 E-value=94 Score=29.83 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=24.1
Q ss_pred hhCCceEEEEcCCCCCcchhHHHHHHH
Q psy2517 219 DQEGTTVLVHGSEGLDSTLVITSLVQV 245 (613)
Q Consensus 219 ~~~~~sVlvh~sdGwD~t~qvsSLaql 245 (613)
+.-|.+|-|||--|-.|.+++.+||-|
T Consensus 94 e~p~~cvavhcvaglgrapvlvalali 120 (173)
T KOG2836|consen 94 EEPGCCVAVHCVAGLGRAPVLVALALI 120 (173)
T ss_pred hCCCCeEEEEeecccCcchHHHHHHHH
Confidence 457899999999999999999999854
No 40
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=42.73 E-value=21 Score=28.76 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=35.3
Q ss_pred ChhhhccccCCCchHHHHHHHHHHHHHHHHHhhhC--CceEEEEcCCCC
Q psy2517 187 SMDKWLSRLDGSSWMSNIKEILSCAHYVAQCLDQE--GTTVLVHGSEGL 233 (613)
Q Consensus 187 ~~~~wl~~le~s~Wl~~v~~~L~~a~~ia~~l~~~--~~sVlvh~sdGw 233 (613)
..+.|.-+.++..+-...-..-+.|...|+.+..+ +..|+||..||.
T Consensus 7 ~~~~W~v~~eg~~ra~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~dG~ 55 (62)
T PF09954_consen 7 EDGGWAVKKEGAKRASKTFDTKAEAIEAARELAKNQGGGELIIHGRDGK 55 (62)
T ss_pred CCCCceEEeCCCcccccccCcHHHHHHHHHHHHHhCCCcEEEEECCCCe
Confidence 34579888888877776666666677666666554 789999999997
No 41
>PF15581 Imm35: Immunity protein 35
Probab=39.69 E-value=14 Score=32.51 Aligned_cols=23 Identities=48% Similarity=0.618 Sum_probs=18.6
Q ss_pred hhCccchhhhhhhhhhhhhhhhc
Q psy2517 246 MLNPECRTIRGLQSLIEREWLQA 268 (613)
Q Consensus 246 ~lDPyyRTi~GF~~LIeKEWi~~ 268 (613)
=.|.--+|++|.+.|||.||-..
T Consensus 24 ~~esa~~~i~~l~~lIe~eWRGl 46 (93)
T PF15581_consen 24 GEESARRTIRNLESLIEHEWRGL 46 (93)
T ss_pred chhHHHHHHHHHHHHHHHHHcCC
Confidence 34556689999999999999753
No 42
>KOG2433|consensus
Probab=39.66 E-value=15 Score=40.65 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhCCceEEE------EcCCCC---CcchhHHHHHHHhhCccchhhhhhhhhhhhhhhhcC
Q psy2517 209 SCAHYVAQCLDQEGTTVLV------HGSEGL---DSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAG 269 (613)
Q Consensus 209 ~~a~~ia~~l~~~~~sVlv------h~sdGw---D~t~qvsSLaql~lDPyyRTi~GF~~LIeKEWi~~G 269 (613)
..+..+|.....+|++|+| |--=|- |-|.|+- =|+|||+|---+..++.-+|-|+..-
T Consensus 489 ~~~rELA~HFqt~GTPVMIGGgvLAHTIlGVd~n~~TGq~K---FLILDPHYTGaeDl~tI~~KGWCgWK 555 (577)
T KOG2433|consen 489 ERVRELARHFQTSGTPVMIGGGVLAHTILGVDFNDTTGQTK---FLILDPHYTGAEDLKTITSKGWCGWK 555 (577)
T ss_pred HHHHHHHHHhhccCCcEEEccceeeeeEeeeeeecccCceE---EEEeCCCcCChhhHHHHhhccccccc
Confidence 3455667777788888876 544444 4566654 46899999999999999999999863
No 43
>KOG0789|consensus
Probab=39.59 E-value=36 Score=37.00 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=19.0
Q ss_pred CCceEEEEcCCCCCcchhHHHHH
Q psy2517 221 EGTTVLVHGSEGLDSTLVITSLV 243 (613)
Q Consensus 221 ~~~sVlvh~sdGwD~t~qvsSLa 243 (613)
...+++||||.|-+||.-++++-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHH
Confidence 45799999999999998777544
No 44
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=36.15 E-value=26 Score=27.96 Aligned_cols=16 Identities=56% Similarity=0.852 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCcc
Q psy2517 27 LQSLIEREWLQAGYPF 42 (613)
Q Consensus 27 ~~~l~~~ew~~~gh~f 42 (613)
-|+||.||||+.=-||
T Consensus 37 vq~liskefiq~itpf 52 (62)
T PF13062_consen 37 VQSLISKEFIQAITPF 52 (62)
T ss_pred HHHHHHHHHHHhcCcc
Confidence 5999999999999999
No 45
>KOG0792|consensus
Probab=35.24 E-value=49 Score=40.88 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhhC-CceEEEEcCCCCCcchhHH
Q psy2517 204 IKEILSCAHYVAQCLDQE-GTTVLVHGSEGLDSTLVIT 240 (613)
Q Consensus 204 v~~~L~~a~~ia~~l~~~-~~sVlvh~sdGwD~t~qvs 240 (613)
++..|+....| +.+++. +-+||||||.|-.||.++-
T Consensus 1045 ~~~FL~Fleev-rsvR~~t~pPilvHCSAGiGRTGVlI 1081 (1144)
T KOG0792|consen 1045 PNDFLDFLEEV-RSVRRGTNPPILVHCSAGIGRTGVLI 1081 (1144)
T ss_pred hHHHHHHHHHH-HHHhccCCCCeEEEccCCCCcceehH
Confidence 45555554443 445554 6799999999999997654
No 46
>KOG1716|consensus
Probab=33.49 E-value=75 Score=33.46 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=17.3
Q ss_pred hhCCceEEEEcCCCCCcchhH
Q psy2517 219 DQEGTTVLVHGSEGLDSTLVI 239 (613)
Q Consensus 219 ~~~~~sVlvh~sdGwD~t~qv 239 (613)
...|.-|||||..|--|++-+
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~ 172 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATL 172 (285)
T ss_pred HhCCCeEEEEcCCccchhHHH
Confidence 446899999999999997643
No 47
>KOG1572|consensus
Probab=32.56 E-value=39 Score=35.11 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCceEEEEcCCCCCcchhHHH
Q psy2517 200 WMSNIKEILSCAHYVAQCLDQEGTTVLVHGSEGLDSTLVITS 241 (613)
Q Consensus 200 Wl~~v~~~L~~a~~ia~~l~~~~~sVlvh~sdGwD~t~qvsS 241 (613)
|-......+..|..+ .|++.+.++||||..|--||..|..
T Consensus 128 ~~~~~~~~i~~~l~~--lld~~N~P~Lihc~rGkhRtg~lVg 167 (249)
T KOG1572|consen 128 FVNIPDHSIRKALKV--LLDKRNYPILIHCKRGKHRTGCLVG 167 (249)
T ss_pred CCCChHHHHHHHHHH--HhcccCCceEEecCCCCcchhhhHH
Confidence 444455555555555 5778999999999999999987653
No 48
>KOG1719|consensus
Probab=31.48 E-value=63 Score=31.73 Aligned_cols=34 Identities=29% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHhhhCCceEEEEcCCCCCcch--hHHHHHH
Q psy2517 211 AHYVAQCLDQEGTTVLVHGSEGLDSTL--VITSLVQ 244 (613)
Q Consensus 211 a~~ia~~l~~~~~sVlvh~sdGwD~t~--qvsSLaq 244 (613)
|+.-+.....-|.+|-|||.-|..|++ ..|=|.|
T Consensus 98 aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq 133 (183)
T KOG1719|consen 98 AVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQ 133 (183)
T ss_pred HHHHHHhccccCCeEEEEecCCCccchhhhhhhhhh
Confidence 333334444578999999999999854 4444443
No 49
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=31.43 E-value=56 Score=31.05 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCCcchhHHHHHHHh
Q psy2517 221 EGTTVLVHGSEGLDSTLVITSLVQVM 246 (613)
Q Consensus 221 ~~~sVlvh~sdGwD~t~qvsSLaql~ 246 (613)
++..+++||..|-.||.-..+++.||
T Consensus 123 ~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 123 KDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999888877776
No 50
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=28.62 E-value=1.3e+02 Score=27.62 Aligned_cols=69 Identities=14% Similarity=0.271 Sum_probs=41.2
Q ss_pred CCCccccccceeEEEecccCc------ce----------eeeeechhhHHHh-hccCCCCCceeEEeecCceEEEecccC
Q psy2517 100 VDGTLCMTGHHLFLSSRKQGV------EE----------LWLLHMAIDMVER-KLNKESPGGVIIIKCKDFRVIMLGIDN 162 (613)
Q Consensus 100 ~~GtlcitghhLi~s~r~~~~------~e----------lwll~~~Id~v~k-k~~~~~~gg~l~~kckn~~i~~l~i~~ 162 (613)
+.|+|+||..|+.|-...+.+ ++ -|-+. .|..|=+ |..= ..-.+-+-|.|-.-+++++.+
T Consensus 18 vpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls-~Ir~v~~RRylL--r~~alEiF~~d~~~~f~~F~~ 94 (108)
T cd01201 18 VKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFS-EIRAIFSRRYLL--QNTALELFLASRTSIFFAFPD 94 (108)
T ss_pred eccEEEEecCEEEEEECCccccccccCccceeccccccceeeHH-HHHHHHHHhhhc--ccceEEEEEeCCceEEEEeCc
Confidence 779999999999999632111 11 45543 3334443 3222 123456667776778888887
Q ss_pred chhHHHHHH
Q psy2517 163 TDHFNCIAQ 171 (613)
Q Consensus 163 i~~~~~v~~ 171 (613)
.+.+.++..
T Consensus 95 ~~~~k~vv~ 103 (108)
T cd01201 95 QNAVKKVVY 103 (108)
T ss_pred HHHHHHHHh
Confidence 765555443
No 51
>KOG0791|consensus
Probab=28.27 E-value=70 Score=35.20 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=43.5
Q ss_pred hhccccCCCchHHH-----HHHHHHHHHHHHHHhhhCCceEEEEcCCCCCcchhHHHHHHHh
Q psy2517 190 KWLSRLDGSSWMSN-----IKEILSCAHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVM 246 (613)
Q Consensus 190 ~wl~~le~s~Wl~~-----v~~~L~~a~~ia~~l~~~~~sVlvh~sdGwD~t~qvsSLaql~ 246 (613)
+..-.+.-..|.+| -..++.-...+-+++..+..+++||||-|-.||.-.-+|=+|+
T Consensus 250 r~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LL 311 (374)
T KOG0791|consen 250 RKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLL 311 (374)
T ss_pred ceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHH
Confidence 44444556677776 4567777777888888888999999999999998777766665
No 52
>KOG3294|consensus
Probab=26.16 E-value=44 Score=34.68 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=20.3
Q ss_pred hhhccccCCCchHHHHHHHHHHHHHHH
Q psy2517 189 DKWLSRLDGSSWMSNIKEILSCAHYVA 215 (613)
Q Consensus 189 ~~wl~~le~s~Wl~~v~~~L~~a~~ia 215 (613)
..|.-...+-|=.+.+..+|+.+..++
T Consensus 110 as~Kl~F~~GG~ieFgq~~l~~~s~a~ 136 (261)
T KOG3294|consen 110 ASFKLTFNEGGCIEFGQLLLQAASRAS 136 (261)
T ss_pred eEEEEEecCCCchhHHHHHHHHHHHHH
Confidence 356555667788888999998887765
No 53
>PLN02727 NAD kinase
Probab=23.20 E-value=88 Score=38.49 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=23.0
Q ss_pred HHHHHh-hhCCceEEEEcCCCCCcchhHHHH
Q psy2517 213 YVAQCL-DQEGTTVLVHGSEGLDSTLVITSL 242 (613)
Q Consensus 213 ~ia~~l-~~~~~sVlvh~sdGwD~t~qvsSL 242 (613)
..++.+ +.-..+||+||..|-|||..++|.
T Consensus 331 ~fa~~l~~slpkPVLvHCKSGarRAGamvA~ 361 (986)
T PLN02727 331 KFASLVSDSSKKPIYLHSKEGVWRTSAMVSR 361 (986)
T ss_pred HHHHHHHhhcCCCEEEECCCCCchHHHHHHH
Confidence 444555 334689999999999999877765
No 54
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=23.11 E-value=1.4e+02 Score=33.91 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhhC--CceEEEEcCCCCCcc-hhHHHHHHHhhCcc
Q psy2517 202 SNIKEILSCAHYVAQCLDQE--GTTVLVHGSEGLDST-LVITSLVQVMLNPE 250 (613)
Q Consensus 202 ~~v~~~L~~a~~ia~~l~~~--~~sVlvh~sdGwD~t-~qvsSLaql~lDPy 250 (613)
..++..|-.++.-+..--.. +.+|||+|.+|.|.. +++-+|-..+-|..
T Consensus 354 ~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~ 405 (451)
T PF04179_consen 354 RDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDD 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcc
Confidence 45777777777555443334 899999999999974 33333334444443
No 55
>PF14470 bPH_3: Bacterial PH domain
Probab=22.02 E-value=1.6e+02 Score=24.90 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=43.1
Q ss_pred CCCCccccccceeEEEeccc--CcceeeeeechhhHHHhhccCCCCCceeEEeecCceEEEecccCchhHHHHHHH
Q psy2517 99 PVDGTLCMTGHHLFLSSRKQ--GVEELWLLHMAIDMVERKLNKESPGGVIIIKCKDFRVIMLGIDNTDHFNCIAQS 172 (613)
Q Consensus 99 ~~~GtlcitghhLi~s~r~~--~~~elwll~~~Id~v~kk~~~~~~gg~l~~kckn~~i~~l~i~~i~~~~~v~~S 172 (613)
...|.+.+|+.++||..... +...-=+....|.+|+-+-. ..++.+.+.+.+ +.+.++--+-.++..+.+.
T Consensus 21 ~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g--~~~~~i~i~~~~-~~~~i~~i~k~~~~~~~~~ 93 (96)
T PF14470_consen 21 SFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKG--ILGGKITIETNG-EKIKIDNIQKGDVKEFYEY 93 (96)
T ss_pred CceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcc--ccccEEEEEECC-EEEEEEEcCHHHHHHHHHH
Confidence 45599999999999997752 22223355677888775411 146789999844 4444442244444444433
No 56
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=21.80 E-value=63 Score=37.13 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=17.7
Q ss_pred EEEEcCCCCCcchhHHHHHH
Q psy2517 225 VLVHGSEGLDSTLVITSLVQ 244 (613)
Q Consensus 225 Vlvh~sdGwD~t~qvsSLaq 244 (613)
.+||||.|-.||..+++.-.
T Consensus 469 PVVHCSAGVGRTGTFIAi~l 488 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALV 488 (535)
T ss_pred ceEEcCCCCchHHHHHHHHH
Confidence 47999999999999998854
Done!