RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2517
(613 letters)
>gnl|CDD|241365 cd13211, PH-GRAM_MTMR9, Myotubularian (MTM) related 9 protein
(MTMR9) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR9 is a catalytically inactive phosphatase
that plays a role as an adapter for the phosphatase
myotubularin to regulate myotubularintracellular
location. It contains a Gly residue instead of a
conserved Cys residue in the dsPTPase catalytic loop
which renders it catalytically inactive as a
phosphatase. MTMR9 contains an N-terminal PH-GRAM
domain, a Rac-induced recruitment domain (RID) domain,
an inactive PTP domain, a SET interaction domain, and a
C-terminal coiled-coil region. Myotubularin-related
proteins are a subfamily of protein tyrosine
phosphatases (PTPs) that dephosphorylate
D3-phosphorylated inositol lipids. Mutations in this
family cause the human neuromuscular disorders
myotubular myopathy and type 4B Charcot-Marie-Tooth
syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain
naturally occurring substitutions of residues required
for catalysis by PTP family enzymes. Although these
proteins are predicted to be enzymatically inactive,
they are thought to function as antagonists of
endogenous phosphatase activity or interaction modules.
Most MTMRs contain a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, a PTP
domain (which may be active or inactive), a
SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 159
Score = 138 bits (350), Expect = 2e-38
Identities = 52/100 (52%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 75 MEFADLIPISKLDGVTLSGACYKTPVDGTLCMTGHHLFLSSRKQGVEELWLLHMAIDMVE 134
MEFA+LI ++D V L + V+GTLC+TGHHL LSSR+ EELWLLH ID +E
Sbjct: 1 MEFAELIKTPRVDNVVLHRP-PRPNVEGTLCLTGHHLILSSRQDNAEELWLLHSNIDSIE 59
Query: 135 RKLNKESPGGVIIIKCKDFRVIMLGIDNTDHFNCIAQSLE 174
+K +S GG II+KCKDFR+I L I + IA S+E
Sbjct: 60 KKFVGQSSGGTIILKCKDFRIIQLDIPGMEECLNIASSIE 99
Score = 121 bits (305), Expect = 4e-32
Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 377 LLHMAIDMVERKLNKESPGGVIIIKCKDFRVIMLGIDNTDHFNCIAQSLEDIVNMEVLKY 436
LLH ID +E+K +S GG II+KCKDFR+I L I + IA S+E + ++E +
Sbjct: 50 LLHSNIDSIEKKFVGQSSGGTIILKCKDFRIIQLDIPGMEECLNIASSIEALSSLESITL 109
Query: 437 KYAFYYRPLYPILEDGWKIFSPEDEIIKICPIPEPEWRVTHCNEKYEVCSS 487
Y F+YRP++ +LEDGW F PE E ++ +WR + N K+ VC S
Sbjct: 110 YYPFFYRPMFEVLEDGWTAFDPESEFARLL-AETDDWRRSSVNNKFSVCCS 159
>gnl|CDD|219103 pfam06602, Myotub-related, Myotubularin-related. This family
represents a region within eukaryotic
myotubularin-related proteins that is sometimes found
with pfam02893. Myotubularin is a dual-specific lipid
phosphatase that dephosphorylates phosphatidylinositol
3-phosphate and phosphatidylinositol (3,5)-bi-phosphate.
Mutations in gene encoding myotubularin-related proteins
have been associated with disease.
Length = 118
Score = 136 bits (344), Expect = 4e-38
Identities = 51/118 (43%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 482 YEVCSSYSRLLIVPNSITDDVIKESAKYRDLGRFPVLCYKYEAKSSILVRSSQPLPGPTA 541
YE+C +Y L+VP SI+DD +K+ AK+R GR PVL +++ +++VR SQPL G +
Sbjct: 1 YELCPTYPAKLVVPKSISDDELKKVAKFRSRGRLPVLSWRHPENGAVIVRCSQPLVGFSG 60
Query: 542 KRCKADEKLLNGYLKS---GKKGIIIDTRTQTLAQSAKNKGGGMELEMFYPQWRRVHK 596
KRCK DEKLL K+ +K I+D R + A + + KGGG E E YP V
Sbjct: 61 KRCKEDEKLLQAIRKANAQSRKLYIVDARPRVNALANRAKGGGYENEENYPNAELVFL 118
>gnl|CDD|206020 pfam13849, Y_phosphatase_m, Myotubularin Y_phosphatase-like. This
short region is highly conserved and seems to be common
to many myotubularin proteins with protein tyrosine
pyrophosphate activity. As the family has a number of
highly conserved residues such as histidine, cysteine,
glutamine and aspartate, it is possible that this
represents a catalytic core of the active enzymatic part
of the proteins.
Length = 55
Score = 91.4 bits (228), Expect = 7e-23
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 223 TTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYPFQLRHR 277
++VLVH S+G D T ++SL Q++L+P RTI G Q LIE+EWL G+PF R
Sbjct: 1 SSVLVHCSDGWDRTSQLSSLAQLLLDPYYRTIEGFQVLIEKEWLSFGHPFSDRCG 55
Score = 37.5 bits (88), Expect = 7e-04
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 27 LQSLIEREWLQAGYPFQLRHR 47
Q LIE+EWL G+PF R
Sbjct: 35 FQVLIEKEWLSFGHPFSDRCG 55
>gnl|CDD|241364 cd13210, PH-GRAM_MTMR6-like, Myotubularian (MTM) related (MTMR) 7
and 8 proteins Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR6, MTMR7, and MRMR8 are all member of the
myotubularin dual specificity protein phosphatase gene
family. They bind to phosphoinositide lipids through its
PH-GRAM domain. These proteins also interact with each
other as well as MTMR9. They contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, an active PTP domain, a SET-interaction domain,
and a C-terminal coiled-coil region.
Myotubularin-related proteins are a subfamily of protein
tyrosine phosphatases (PTPs) that dephosphorylate
D3-phosphorylated inositol lipids. Mutations in this
family cause the human neuromuscular disorders
myotubular myopathy and type 4B Charcot-Marie-Tooth
syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain
naturally occurring substitutions of residues required
for catalysis by PTP family enzymes. Although these
proteins are predicted to be enzymatically inactive,
they are thought to function as antagonists of
endogenous phosphatase activity or interaction modules.
Most MTMRs contain a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, a PTP
domain (which may be active or inactive), a
SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The
lipid-binding FYVE domain has been shown to bind
phosphotidylinositol-3-phosphate. The GRAM domain, found
in myotubularins, glucosyltransferases, and other
putative membrane-associated proteins, is part of a
larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 98
Score = 48.4 bits (116), Expect = 3e-07
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 97 KTPVDGTLCMTGHHLFL--SSRKQGVEELWLLHMAIDMVERKLNKESPGGVIIIKCKDFR 154
K GTL +T HL S K+ E W+LHM I VE KL + G ++I+CK F
Sbjct: 18 KKHSVGTLYLTATHLIFVDPSGKK---ETWILHMHIASVE-KLPLTTGGSPLVIRCKTFL 73
Query: 155 VIMLGI 160
V+ I
Sbjct: 74 VVTFVI 79
Score = 30.7 bits (70), Expect = 0.59
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 377 LLHMAIDMVERKLNKESPGGVIIIKCKDFRVIMLGI 412
+LHM I VE KL + G ++I+CK F V+ I
Sbjct: 45 ILHMHIASVE-KLPLTTGGSPLVIRCKTFLVVTFVI 79
>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. Myotubularin-related proteins are a subfamily
of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold.
Length = 94
Score = 45.7 bits (109), Expect = 3e-06
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 89 VTLSGACYKTPVDGTLCMTGHHL-FLSSRKQGVEELWLLHMAIDMVER---KLNKESPGG 144
VT + PV+GTL +T + L F S + EL + I VE+ + E+ G
Sbjct: 6 VTYICPFHVGPVEGTLYLTNYRLYFKSKERDSPTELDVPLGVISRVEKVGGSSSGENSYG 65
Query: 145 VIIIKCKDFRVIMLGIDNTDH 165
+ I CKD R + DH
Sbjct: 66 -LEITCKDMRNLRFAFKQEDH 85
Score = 28.8 bits (65), Expect = 2.1
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 392 ESPGGVIIIKCKDFRVIMLGIDNTDH 417
E+ G + I CKD R + DH
Sbjct: 61 ENSYG-LEITCKDMRNLRFAFKQEDH 85
>gnl|CDD|241499 cd13345, PH-GRAM_MTMR8, Myotubularian (MTM) related 8 protein
(MTMR8) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR8 is a member of the myotubularin dual
specificity protein phosphatase gene family. MTMR8 binds
to phosphoinositide lipids through its PH-GRAM domain.
MTMR8 can self associate and interacts with MTMR6, MTMR7
and MTMR9. MTMR8 contains a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, an active
PTP domain, a SET-interaction domain, and a C-terminal
coiled-coil region. Myotubularin-related proteins are a
subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 105
Score = 42.9 bits (101), Expect = 3e-05
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 97 KTPVDGTLCMTGHHL-FLSSRKQGVEELWLLHMAIDMVERKLNKESPGGVIIIKCKDFRV 155
K P +GTL +T HL ++ + + +E W+ H I VE KL S G ++++CK+FRV
Sbjct: 21 KKPANGTLYLTATHLIYVEASGEARKETWIAHHHIATVE-KLPLTSLGCPLLLRCKNFRV 79
>gnl|CDD|241497 cd13343, PH-GRAM_MTMR6, Myotubularian (MTM) related (MTMR) 6
protein Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR6 is a member of the myotubularin dual
specificity protein phosphatase gene family. MTMR6 binds
to phosphoinositide lipids through its PH-GRAM domain.
It acts as a negative regulator of KCNN4/KCa3.1 channel
activity in CD4+ T-cells possibly by decreasing
intracellular levels of phosphatidylinositol-3
phosphatase and negatively regulates proliferation of
reactivated CD4+ T-cells MTMR6 interacts with MTMR7,
MTMR8 and MTMR9. MTMR6 contains a N-terminal PH-GRAM
domain, a Rac-induced recruitment domain (RID) domain,
an active PTP domain, a SET-interaction domain, and a
C-terminal coiled-coil region. Myotubularin-related
proteins are a subfamily of protein tyrosine
phosphatases (PTPs) that dephosphorylate
D3-phosphorylated inositol lipids. Mutations in this
family cause the human neuromuscular disorders
myotubular myopathy and type 4B Charcot-Marie-Tooth
syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain
naturally occurring substitutions of residues required
for catalysis by PTP family enzymes. Although these
proteins are predicted to be enzymatically inactive,
they are thought to function as antagonists of
endogenous phosphatase activity or interaction modules.
Most MTMRs contain a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, a PTP
domain (which may be active or inactive), a
SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 104
Score = 41.8 bits (98), Expect = 7e-05
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 102 GTLCMTGHHL-FLSSRKQGVEELWLLHMAIDMVERKLNKESPGGVIIIKCKDFRVI 156
GTL +T HL F+ S ++ E W+LH I VE KL + G ++I+CK+FRV+
Sbjct: 27 GTLYLTATHLLFIDSLQK---ETWILHHHIAAVE-KLALTTSGCPLVIQCKNFRVV 78
Score = 27.5 bits (61), Expect = 8.6
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 377 LLHMAIDMVERKLNKESPGGVIIIKCKDFRVI 408
+LH I VE KL + G ++I+CK+FRV+
Sbjct: 48 ILHHHIAAVE-KLALTTSGCPLVIQCKNFRVV 78
>gnl|CDD|241498 cd13344, PH-GRAM_MTMR7, Myotubularian (MTM) related 7 protein
(MTMR7) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR7 is a member of the myotubularin dual
specificity protein phosphatase gene family. MTMR6 binds
to phosphoinositide lipids through its PH-GRAM domain
and can hydrolyze phosphatidylinositol(3)-phosphate and
phosphatidylinositol(3,5)-biphosphate. MTMR7 interacts
with MTMR6, MTMR8 and MTMR9. MTMR7 contains a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, an active PTP domain, a SET-interaction domain,
and a C-terminal coiled-coil region.
Myotubularin-related proteins are a subfamily of protein
tyrosine phosphatases (PTPs) that dephosphorylate
D3-phosphorylated inositol lipids. Mutations in this
family cause the human neuromuscular disorders
myotubular myopathy and type 4B Charcot-Marie-Tooth
syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain
naturally occurring substitutions of residues required
for catalysis by PTP family enzymes. Although these
proteins are predicted to be enzymatically inactive,
they are thought to function as antagonists of
endogenous phosphatase activity or interaction modules.
Most MTMRs contain a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, a PTP
domain (which may be active or inactive), a
SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 107
Score = 40.2 bits (94), Expect = 3e-04
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 102 GTLCMTGHH-LFLSSRKQGVEELWLLHMAIDMVERKLNKESPGGVIIIKCKDFRVIMLGI 160
GTL +T H +F+ + + +E W+LH I +E++ + G ++I+CK+F++I L I
Sbjct: 26 GTLYLTATHVIFVENGSETRKETWILHSQISSIEKQATTAT-GCPLLIRCKNFQIIQLII 84
>gnl|CDD|181637 PRK09071, PRK09071, hypothetical protein; Validated.
Length = 323
Score = 36.0 bits (84), Expect = 0.044
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 215 AQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLN-PECRTIRGLQSLIEREWLQAGYPFQ 273
A+ L Q G VL+HG G + + T + L P R+ W +A
Sbjct: 99 AKLLAQNGYRVLLHGGGGHTAGRLYTEQLLEALGIPIARS-----------WQEAEQ--A 145
Query: 274 LRHRYSCYSPL 284
L Y PL
Sbjct: 146 LEEHNIAYLPL 156
>gnl|CDD|153078 cd07931, eukaryotic_phosphagen_kinases, Phosphagen (guanidino)
kinases mostly found in eukaryotes. Phosphagen
(guanidino) kinases are enzymes that transphosphorylate
a high energy phosphoguanidino compound, like
phosphocreatine (PCr) in the case of creatine kinase
(CK) or phosphoarginine in the case of arginine kinase,
which is used as an energy-storage and -transport
metabolite, to ADP, thereby creating ATP. The substrate
binding site is located in the cleft between the N and
C-terminal domains, but most of the catalytic residues
are found in the larger C-terminal domain. In higher
eukaryotes, CK exists in tissue-specific (muscle,
brain), as well as compartment-specific (mitochondrial
and cytosolic) isoforms. They are either coupled to
glycolysis (cytosolic form) or oxidative phosphorylation
(mitochondrial form). Besides CK and AK, the most
studied members of this family are also other phosphagen
kinases with different substrate specificities, like
glycocyamine kinase (GK), lombricine kinase (LK),
taurocyamine kinase (TK) and hypotaurocyamine kinase
(HTK).
Length = 338
Score = 31.5 bits (72), Expect = 1.4
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 373 VNNNLL--HMAIDMVERKLNKESPGGVIIIKCKDFRVIMLGIDNTDHF-NCIAQSLEDIV 429
N +LL ++ ++ E+ N+++ G + I G+DN D A E
Sbjct: 3 SNKSLLAKYLTPEVYEKLKNRKTASGFTLADV-----IQSGVDNPDSGVGVYAGDEES-- 55
Query: 430 NMEVLKYK-YAFYYRPLYPILEDGWKIFSPED 460
Y +A P++ED + PED
Sbjct: 56 ------YDVFAPL---FDPVIEDYHGGYKPED 78
>gnl|CDD|214813 smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha
toxin). This domain conveys a zinc dependent
phospholipase C activity (EC 3.1.4.3). It is found in a
monomeric phospholipase C of Bacillus cereus as well as
in the alpha toxin of Clostridium perfringens and
Clostridium bifermentans, which is involved in
haemolysis and cell rupture. It is also found in a
lecithinase of Listeria monocytogenes, which is involved
in breaking the 2-membrane vacuoles that surround the
bacterium. Structure information: PDB 1ca1.
Length = 241
Score = 30.5 bits (69), Expect = 2.4
Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 123 LWLLHMAIDMVERKLNKESPGGVIIIKCKDFRVIMLGIDNTDH 165
L++++ A+++++ NK V I+K K+++ + LG D+
Sbjct: 41 LFIVNQALEILKNDNNKNEYKLVEILK-KNYKELKLGSTYADY 82
>gnl|CDD|185554 PTZ00323, PTZ00323, NAD+ synthase; Provisional.
Length = 294
Score = 30.1 bits (68), Expect = 3.6
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 160 IDNTDHFNCIAQSLEDIVNMASNDVTCSMDKWLSRLDGSSWMSNIKEILSCAHYVAQCLD 219
+D T+ ++ +E V + +R S+M A YVAQ L
Sbjct: 111 VDQTEIHTQLSSLVEKAVGIKGGA--------FARGQLRSYMRT-----PVAFYVAQLLS 157
Query: 220 QEGTTVLVHGSEGLD 234
QEGT +V G+ D
Sbjct: 158 QEGTPAVVMGTGNFD 172
>gnl|CDD|216266 pfam01051, Rep_3, Initiator Replication protein. This protein is
an initiator of plasmid replication. RepB possesses
nicking-closing (topoisomerase I) like activity. It is
also able to perform a strand transfer reaction on ssDNA
that contains its target. This family also includes RepA
which is an E.coli protein involved in plasmid
replication. The RepA protein binds to DNA repeats that
flank the repA gene.
Length = 218
Score = 29.5 bits (67), Expect = 3.8
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 17/109 (15%)
Query: 367 KNPLYQVNNNLLHMAIDM--VERKL--------NKESPGGVIIIKCKDFRVIMLGIDNTD 416
L +N+L+ + + +E KL + V D+ + + G+++
Sbjct: 1 SKELVVKSNDLIEASYKLTLLELKLFFLLLSKIKPDDKDFVEYESISDYALELFGVNSEG 60
Query: 417 HFNCIAQSLEDIVNMEVLKYKYAFYYRPLYPILEDGWKIFSPEDEIIKI 465
+ + ++LE + K F + I IIK
Sbjct: 61 AYKRLKEALERL-------MKKDFEIEDEEEKGGEIINIVLWVGYIIKE 102
>gnl|CDD|241512 cd13358, PH-GRAM_MTMR1, Myotubularian related 1 protein (MTMR1)
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase activators and Myotubularins (PH-GRAM) domain.
MTMR1 is a member of the myotubularin protein
phosphatase gene family. MTMR1 binds to phosphoinositide
lipids through its PH-GRAM domain, and can hydrolyze
phosphatidylinositol(3)-phosphate and
phosphatidylinositol(3,5)-biphosphate in vitro. MTMR1
contain a N-terminal PH-GRAM domain, a Rac-induced
recruitment domain (RID) domain, an active PTP domain, a
SET-interaction domain, a coiled-coil region, and a
C-terminal PDZ domain. Myotubularin-related proteins are
a subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 153
Score = 28.6 bits (64), Expect = 5.6
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 438 YAFYYRPLYPILEDGWKIFSPEDE 461
+AF Y+ +P DGWK++ P E
Sbjct: 130 FAFSYKEKFP--VDGWKVYDPVAE 151
>gnl|CDD|237271 PRK13016, PRK13016, dihydroxy-acid dehydratase; Provisional.
Length = 577
Score = 29.3 bits (66), Expect = 6.4
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 31 IEREWLQAG-YPFQLRHRYSCYSPLRGKSQS---PTFLLFLDCITSSAMEFADLIPISKL 86
++R LQAG +P +L P S++ PT +L+ + + AME +LI +
Sbjct: 68 VKRGVLQAGGFPLEL--------PALSLSENFVKPTTMLYRNLL---AMETEELIRSHPV 116
Query: 87 DGVTLSGACYKT 98
DG L G C KT
Sbjct: 117 DGAVLMGGCDKT 128
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 29.0 bits (66), Expect = 8.3
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 483 EVCSSYSRLLIVPNSITDDVIKE 505
+VC++ SR L+V SI D+ ++
Sbjct: 267 QVCTAGSR-LLVHESIYDEFVER 288
>gnl|CDD|153076 cd00716, creatine_kinase_like, Phosphagen (guanidino) kinases such
as creatine kinase and similar enzymes. Eukaryotic
creatine kinase-like phosphagen (guanidino) kinases are
enzymes that transphosphorylate a high energy
phosphoguanidino compound, like phosphocreatine (PCr) in
the case of creatine kinase (CK), which is used as an
energy-storage and -transport metabolite, to ADP,
thereby creating ATP. The substrate binding site is
located in the cleft between the N and C-terminal
domains, but most of the catalytic residues are found in
the larger C-terminal domain. In higher eukaryotes, CKs
are found as tissue-specific (muscle, brain), as well as
compartment-specific (mitochondrial, cytosolic, and
flagellar) isoforms. Mitochondrial and cytoplasmic CKs
are dimeric or octameric, while the flagellar isoforms
are trimers with three CD domains fused as a single
protein chain. CKs are either coupled to glycolysis
(cytosolic form) or oxidative phosphorylation
(mitochondrial form). Besides CK, one of the most
studied members of this family, this model also
represents other phosphagen kinases with different
substrate specificities, like glycocyamine kinase (GK),
lombricine kinase (LK), taurocyamine kinase (TK), and
echinoderm arginine kinase (AK).
Length = 357
Score = 28.8 bits (65), Expect = 9.1
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 369 PLYQVNNNLL--HMAIDMVERKLNKESPGGVIIIKCKDFRVIMLGIDNTDH 417
P +NN + + +M + +K +P GV + KC I G+DN H
Sbjct: 6 PDLSKHNNHMAKVLTPEMYAKLRDKVTPNGVTLDKC-----IQTGVDNPGH 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.421
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,194,548
Number of extensions: 3025308
Number of successful extensions: 2189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2179
Number of HSP's successfully gapped: 32
Length of query: 613
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 510
Effective length of database: 6,369,140
Effective search space: 3248261400
Effective search space used: 3248261400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.5 bits)