RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2517
(613 letters)
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8
c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 194 bits (493), Expect = 6e-55
Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 8/226 (3%)
Query: 151 KDFRVIMLGIDNTDHFNCIAQSLEDIVNMASNDVTCSMDKWLSRLDGSSWMSNIKEILSC 210
++ ++ L I N + + +SL + + + WLS L+ + W+ +IK IL+
Sbjct: 275 QNAELVFLDIHN---IHVMRESLRKLKEIVYPN--IEETHWLSNLESTHWLEHIKLILAG 329
Query: 211 AHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGY 270
A +A ++ T+V+VH S+G D T +TSL +ML+ RTIRG + L+E+EWL G+
Sbjct: 330 ALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGH 389
Query: 271 PFQLRHRYSCYSPLRGKSQSPTFLLFLDCLYQLQNQFVCSFEFSADFLILIFEHSYFSPY 330
FQLR + + +SP FL F+DC++Q+ QF +FEF+ FLI I +H Y +
Sbjct: 390 RFQLRVGHGDKNH-ADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLF 448
Query: 331 GTFLLNSEKERVDENLSTRTSSLWSYVNRPDLLAQLKNPLYQVNNN 376
GTFL NSE++R ENL RT SLWSY+N L NPLY +N
Sbjct: 449 GTFLCNSEQQRGKENLPKRTVSLWSYINSQ--LEDFTNPLYGSYSN 492
Score = 148 bits (373), Expect = 2e-38
Identities = 78/246 (31%), Positives = 114/246 (46%), Gaps = 11/246 (4%)
Query: 376 NLLHMAIDMVERKLNKESPGG---VIIIKCKDFRVIMLGIDNTDH-FNCIAQSLED-IVN 430
+ I+ VE+ S G + CKD R + I ++L
Sbjct: 57 DASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFP 116
Query: 431 MEVLKYKYAFYYRPLYPILEDGWKIFSPEDEIIKICPIPEPEWRVTHCNEKYEVCSSYSR 490
+ +AF Y+ ++P E+GWK++ P E + IP WR+T NE+YE+C +Y
Sbjct: 117 VSNNLPLFAFEYKEVFP--ENGWKLYDPLLEYRRQG-IPNESWRITKINERYELCDTYPA 173
Query: 491 LLIVPNSITDDVIKESAKYRDLGRFPVLCYKYEAKSSILVRSSQPLPGPTAKRCKADEKL 550
LL+VP +I D+ +K A +R GR PVL + + + + R SQP+ G + KR K DEK
Sbjct: 174 LLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKEDEKY 233
Query: 551 LNGYLKSG---KKGIIIDTRTQTLAQSAKNKGGGMELEMFYPQWRRVHKPVDKHTVLLDS 607
L + S K I D R A + K KGGG E E Y V + V+ +S
Sbjct: 234 LQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRES 293
Query: 608 LAKFVE 613
L K E
Sbjct: 294 LRKLKE 299
Score = 56.0 bits (134), Expect = 2e-08
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 73 SAMEFADLIP----ISKLDGVTLSGACYKTPVDGTLCMTGHHLFLSSRKQGVEE-LWLLH 127
++ME L+P VT + V GTL +T + L+ S ++ L
Sbjct: 2 ASMEEPPLLPGENIKDMAKDVTYICP-FTGAVRGTLTVTNYRLYFKSMERDPPFVLDASL 60
Query: 128 MAIDMVERKLNKESPGG---VIIIKCKDFRVIMLGIDNTDH 165
I+ VE+ S G + CKD R +
Sbjct: 61 GVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGR 101
Score = 47.9 bits (113), Expect = 7e-06
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 24 VKKLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCI 70
++ + L+E+EWL G+ FQLR + + +SP FL F+DC+
Sbjct: 373 IRGFEVLVEKEWLSFGHRFQLRVGHGDKNH-ADADRSPVFLQFIDCV 418
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 196 bits (498), Expect = 9e-55
Identities = 89/227 (39%), Positives = 129/227 (56%), Gaps = 8/227 (3%)
Query: 150 CKDFRVIMLGIDNTDHFNCIAQSLEDIVNMASNDVTCSMDKWLSRLDGSSWMSNIKEILS 209
++ ++ L I N + L++IV WLS L+ + W+ +IK IL+
Sbjct: 346 YQNAELVFLDIHNIHVMRESLRKLKEIVYP-----NIEETHWLSNLESTHWLEHIKLILA 400
Query: 210 CAHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAG 269
A +A ++ T+V+VH S+G D T +TSL +ML+ RTIRG + L+E+EWL G
Sbjct: 401 GALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFG 460
Query: 270 YPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLYQLQNQFVCSFEFSADFLILIFEHSYFSP 329
+ FQLR + + +SP FL F+DC++Q+ QF +FEF+ FLI I +H Y
Sbjct: 461 HRFQLRVGHGDKNH-ADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCL 519
Query: 330 YGTFLLNSEKERVDENLSTRTSSLWSYVNRPDLLAQLKNPLYQVNNN 376
+GTFL NSE++R ENL RT SLWSY+N L NPLY +N
Sbjct: 520 FGTFLCNSEQQRGKENLPKRTVSLWSYINSQ--LEDFTNPLYGSYSN 564
Score = 153 bits (387), Expect = 1e-39
Identities = 78/246 (31%), Positives = 114/246 (46%), Gaps = 11/246 (4%)
Query: 376 NLLHMAIDMVERKLNKESPGG---VIIIKCKDFRVIMLGIDNTDH-FNCIAQSLED-IVN 430
+ I+ VE+ S G + CKD R + I ++L
Sbjct: 129 DASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFP 188
Query: 431 MEVLKYKYAFYYRPLYPILEDGWKIFSPEDEIIKICPIPEPEWRVTHCNEKYEVCSSYSR 490
+ +AF Y+ ++P E+GWK++ P E + IP WR+T NE+YE+C +Y
Sbjct: 189 VSNNLPLFAFEYKEVFP--ENGWKLYDPLLEYRRQG-IPNESWRITKINERYELCDTYPA 245
Query: 491 LLIVPNSITDDVIKESAKYRDLGRFPVLCYKYEAKSSILVRSSQPLPGPTAKRCKADEKL 550
LL+VP +I D+ +K A +R GR PVL + + + + R SQP+ G + KR K DEK
Sbjct: 246 LLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKEDEKY 305
Query: 551 LNGYLKSG---KKGIIIDTRTQTLAQSAKNKGGGMELEMFYPQWRRVHKPVDKHTVLLDS 607
L + S K I D R A + K KGGG E E Y V + V+ +S
Sbjct: 306 LQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRES 365
Query: 608 LAKFVE 613
L K E
Sbjct: 366 LRKLKE 371
Score = 54.6 bits (130), Expect = 6e-08
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 83 ISKLDGVTLSGACYKTPVDGTLCMTGHHLFLSSRKQGVEE-LWLLHMAIDMVERKLNKES 141
VT + V GTL +T + L+ S ++ L I+ VE+ S
Sbjct: 88 KDMAKDVTYICP-FTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASS 146
Query: 142 PGG---VIIIKCKDFRVIMLGIDNTDH 165
G + CKD R +
Sbjct: 147 RGENSYGLETVCKDIRNLRFAHKPEGR 173
Score = 50.4 bits (119), Expect = 1e-06
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 24 VKKLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCITSSAMEFADLIPI 83
++ + L+E+EWL G+ FQLR + + +SP FL F+DC+ +F
Sbjct: 445 IRGFEVLVEKEWLSFGHRFQLRVGHGDKNH-ADADRSPVFLQFIDCVWQMTRQFPTAFEF 503
Query: 84 SKLDGVTLSGACYKTPVDGTLCMTGHHLFLSSRKQGVEELW 124
++ +T+ Y LC + + + LW
Sbjct: 504 NEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLW 544
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Length = 512
Score = 187 bits (475), Expect = 2e-52
Identities = 74/227 (32%), Positives = 117/227 (51%), Gaps = 9/227 (3%)
Query: 150 CKDFRVIMLGIDNTDHFNCIAQSLEDIVNMASNDVTCSMDKWLSRLDGSSWMSNIKEILS 209
+ R +GI+N Q L + + S++ + S L+ S W+ +IK ++
Sbjct: 261 YSNIRFQFVGIENIHVMRSSLQKLLE----VNGTKGLSVNDFYSGLESSGWLRHIKAVMD 316
Query: 210 CAHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAG 269
A ++A+ + E +VLVH S+G D T + SL ++L+ RTI+G LIE++W+ G
Sbjct: 317 AAVFLAKAITVENASVLVHCSDGWDRTSQVCSLGSLLLDSYYRTIKGFMVLIEKDWISFG 376
Query: 270 YPFQLRHRYSCYSPLRGKSQSPTFLLFLDCLYQLQNQFVCSFEFSADFLILIFEHSYFSP 329
+ F R P K SP F FL+C++ L QF +FEFS FL+ I EH +
Sbjct: 377 HKFSERCGQLDGDP---KEVSPVFTQFLECVWHLTEQFPQAFEFSEAFLLQIHEHIHSCQ 433
Query: 330 YGTFLLNSEKERVDENLSTRTSSLWSYVNRPDLLAQLKNPLYQVNNN 376
+G FL N +KER + L +T SLW ++ + NPLY ++
Sbjct: 434 FGNFLGNCQKEREELKLKEKTYSLWPFLLED--QKKYLNPLYSSESH 478
Score = 164 bits (416), Expect = 2e-44
Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 8/242 (3%)
Query: 377 LLHMAIDMVERKLNKESPGGVIIIKCKDFRVIMLGIDNTDHFNCIAQSLEDIVNMEVLKY 436
+LH I VE KL + G ++I+CK+FR + + + I SL + +
Sbjct: 48 ILHHHIASVE-KLALTTSGCPLVIQCKNFRTVHFIVPRERDCHDIYNSLLQLSKQAKYED 106
Query: 437 KYAFYYRPLYPILE--DGWKIFSPEDEIIKICPIPEPEWRVTHCNEKYEVCSSYSRLLIV 494
YAF Y P E GW++ +E ++ +P W+++ N Y++C +Y R L V
Sbjct: 107 LYAFSYNPKQNDSERLQGWQLIDLAEEYKRMG-VPNSHWQLSDANRDYKICETYPRELYV 165
Query: 495 PNSITDDVIKESAKYRDLGRFPVLCYKYEAKSSILVRSSQPLPGPTAKRCKADEKLLN-- 552
P + +I S+K+R GRFPVL Y ++ K + + R SQPL G + RC DE LL
Sbjct: 166 PRIASKPIIVGSSKFRSKGRFPVLSYYHQDKEAAICRCSQPLSGFS-ARCLEDEHLLQAI 224
Query: 553 -GYLKSGKKGIIIDTRTQTLAQSAKNKGGGMELEMFYPQWRRVHKPVDKHTVLLDSLAKF 611
+ ++DTR + A + + G G E E Y R ++ V+ SL K
Sbjct: 225 SKANPVNRYMYVMDTRPKLNAMANRAAGKGYENEDNYSNIRFQFVGIENIHVMRSSLQKL 284
Query: 612 VE 613
+E
Sbjct: 285 LE 286
Score = 83.4 bits (205), Expect = 5e-17
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 79 DLIPISKLDGVTLS--GACYKTPVDGTLCMTGHHLFLSSRKQGVEELWLLHMAIDMVERK 136
+ I +K++ V L + + GTL +T HL Q +E W+LH I VE K
Sbjct: 2 EHIRTTKVEQVKLLDRFSTSNKSLTGTLYLTATHLLFIDSHQ--KETWILHHHIASVE-K 58
Query: 137 LNKESPGGVIIIKCKDFRVIMLGIDNTDHFNCIAQSLEDIVNMASND 183
L + G ++I+CK+FR + + + I SL + A +
Sbjct: 59 LALTTSGCPLVIQCKNFRTVHFIVPRERDCHDIYNSLLQLSKQAKYE 105
Score = 43.7 bits (102), Expect = 1e-04
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 24 VKKLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCI 70
+K LIE++W+ G+ F R P K SP F FL+C+
Sbjct: 361 IKGFMVLIEKDWISFGHKFSERCGQLDGDP---KEVSPVFTQFLECV 404
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.1 bits (184), Expect = 4e-14
Identities = 77/454 (16%), Positives = 151/454 (33%), Gaps = 155/454 (34%)
Query: 28 QSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCITSSAMEFADLIPISKLD 87
Q + ++ + +LR Y Y L G D I SA ++LI
Sbjct: 163 QGNTD-DYFE-----ELRDLYQTYHVLVG-----------DLIKFSAETLSELI------ 199
Query: 88 GVTLSGACYKTPVDGT-LCMTGHHL--FLSSRKQGVEELWLLHMAIDMVERKLNKESPG- 143
+T +D + G ++ +L + ++ +LL + I P
Sbjct: 200 ---------RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC---------PLI 241
Query: 144 GVI-----IIKCKDFRVIMLGIDNTDHFNCIAQSL---EDIVNMASNDVTCSM-DKWLSR 194
GVI ++ K +LG + + + + + +V A V + D W
Sbjct: 242 GVIQLAHYVVTAK-----LLGFTPGELRSYLKGATGHSQGLV-TA---VAIAETDSW--- 289
Query: 195 LDGSSWMSNIKEILSCAHYV-AQCLDQEGTTVL--------VHGSEGLDST-LVITSLVQ 244
S+ ++++ ++ ++ +C + T L + +EG+ S L I++L Q
Sbjct: 290 ---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 245 VMLNPECRTIRGLQSLIEREWLQ------------AGYPFQLRHRYSCYSPLRGKSQSPT 292
+ L + ++ +G P L Y LR
Sbjct: 347 EQVQDYVNKTN--SHLPAGKQVEISLVNGAKNLVVSGPPQSL---YGLNLTLRKAKAPSG 401
Query: 293 FLLFLDCLYQLQNQFVCS---FEFSADFL-ILIFEHSYFSPYGTFLLNSEKERVDENLST 348
LD Q++ S +FS FL + SP+ + LL + ++++L
Sbjct: 402 ----LD-----QSRIPFSERKLKFSNRFLPV-------ASPFHSHLLVPASDLINKDLVK 445
Query: 349 RTSSLWSYVNRPDLLAQLKNPLY---------QVNNNLLHMAIDMVER------KLNKES 393
S + ++ P+Y ++ ++ +D + R +
Sbjct: 446 NNVSFNA--------KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 394 --------PGGV-----IIIKCKD---FRVIMLG 411
PGG + + KD RVI+ G
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Score = 32.3 bits (73), Expect = 0.62
Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 52/184 (28%)
Query: 48 YSCYSPLRGKSQSPTFLLF----------LDCITSSAMEFADLIPISKLDGVTLSGACYK 97
+ + L+ K P F L + + M L+ + G+T+ A
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASL-ADVMSIESLVEVVFYRGMTMQVAV-- 1797
Query: 98 TPVDGTLCMTGHHLF----LSSRKQGVEELWLLHMAIDMVERKLNKESPGGVIIIKCKDF 153
P D L + + + +E A+ V ++ K + G ++ I
Sbjct: 1798 -PRD-ELGRSNYGMIAINPGRVAASFSQE------ALQYVVERVGKRT-GWLVEI----- 1843
Query: 154 RVIMLGIDNTDHFNC------IA---QSLEDIVNMASNDVTCSMDKWLSRLDGSSWMSNI 204
V N +N A ++L+ + N+ + +D + L S + +
Sbjct: 1844 -V------N---YNVENQQYVAAGDLRALDTVTNVLNFIKLQKID--IIELQKSLSLEEV 1891
Query: 205 KEIL 208
+ L
Sbjct: 1892 EGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 3e-10
Identities = 63/416 (15%), Positives = 117/416 (28%), Gaps = 124/416 (29%)
Query: 231 EGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQS 290
+ D V ++ E I + +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG--------------------------- 63
Query: 291 PTFLLFLDCLYQLQNQFVCSF-----EFSADFLILIFEHSYFSPYG-TFLLNSEKERVDE 344
T LF L Q + V F + FL+ + P T + +++R
Sbjct: 64 -TLRLF-WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--- 118
Query: 345 NLSTRTSSLWSY-VNRPDLLAQLKNPLYQVNNN---LLH---------MAIDMV-ERKLN 390
L Y V+R +L+ L ++ L+ +A+D+ K+
Sbjct: 119 -LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 391 KESPGGVIIIKCKDFRVIMLGIDNTDHFNCIAQSLEDIVNMEVLKYKYAFYYRPLYPILE 450
+ + + L N+ + ++ L Y+ P +
Sbjct: 178 CKMDFKIFWLN--------LKNCNSPE--------TVLEMLQKLLYQ----IDPNWTSRS 217
Query: 451 DGWKIFSPEDEIIKICPIPEPEWRVTHCNEKYEVCSSYSRLLIVPNSITDDV-IKESAKY 509
D + + I I + E R ++ YE C LL++ +V ++
Sbjct: 218 DH--SSNIKLRIHSI----QAELRRLLKSKPYENC-----LLVL-----LNVQNAKAWNA 261
Query: 510 RDLGRFPVLCYKYEAKSSILV--RSSQ---PLPGPTAKRCKADEKLLNGYLKSGKKGI-- 562
+L C IL+ R Q L T D K +
Sbjct: 262 FNLS-----C-------KILLTTRFKQVTDFLSAATTTHISLDH-HSMTLTPDEVKSLLL 308
Query: 563 -IIDTRTQTLAQSAKNKGGGMELEMF----------YPQWRRVHKPVDKHTVLLDS 607
+D R Q L + L + + W+ V+ DK T +++S
Sbjct: 309 KYLDCRPQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNC--DKLTTIIES 361
Score = 56.0 bits (134), Expect = 3e-08
Identities = 45/259 (17%), Positives = 93/259 (35%), Gaps = 47/259 (18%)
Query: 19 ENWKKV--KKLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCITSSAME 76
+NWK V KL ++IE L P + R + S + PT LL + +
Sbjct: 345 DNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILL---SLIWFDVI 400
Query: 77 FADLIPISKLDGVTLSGACYKTPVDGTLCMTGHHLFLSSRKQGVEELWLLHMAIDMVER- 135
+D++ + ++ + K P + T+ + ++L + + +E + LH +I V+
Sbjct: 401 KSDVMVV--VNKLHKYSLVEKQPKESTISI--PSIYLELKVK-LENEYALHRSI--VDHY 453
Query: 136 KLNKESPGGVIIIKCKD---FRVI---MLGIDNTDHFNCIAQSLEDIVNMASNDVTCSMD 189
+ K +I D + I + I++ + D
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF------------- 500
Query: 190 KWLS---RLDGSSWM---SNIKEILSCAHYVAQCLDQEGT-----TVLVHGSEGLDSTLV 238
++L R D ++W S + + Y D + ++ ++ L+
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 239 I---TSLVQVMLNPECRTI 254
T L+++ L E I
Sbjct: 561 CSKYTDLLRIALMAEDEAI 579
Score = 54.9 bits (131), Expect = 7e-08
Identities = 98/621 (15%), Positives = 185/621 (29%), Gaps = 204/621 (32%)
Query: 13 LMSPEGEN------WKKVKKLQSLIER---EWLQAGYPFQLRHRYSCYSPLRGKSQSPT- 62
+MS + + W + K + ++++ E L+ Y F SP++ + + P+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-------LMSPIKTEQRQPSM 107
Query: 63 ----FLLFLDCITSSAMEFADLI-----PISKL----------DGVTLSGACYKTPVDGT 103
++ D + + FA P KL V + G
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG---------- 157
Query: 104 LCMTGHHLFLSSRKQGVEELWLLHMAIDMV-ERKLNKESPGGVIIIKCKDFRVIMLGIDN 162
+ G S K W+ A+D+ K+ + + + L N
Sbjct: 158 --VLG------SGKT-----WV---ALDVCLSYKVQCKMDFKIFWLN--------LKNCN 193
Query: 163 TDHFNCIAQSLEDIVNMASNDVTCSMDKWLSRLDGS--------SWMSNIKEILSCAHYV 214
+ E ++ M + W SR D S S + ++ +L Y
Sbjct: 194 SP---------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 215 AQCLDQEGTTVL--VHGSEGLDS------TLVITSLVQVM--LNPECRTIRGL----QSL 260
CL VL V ++ ++ L+ T QV L+ T L +L
Sbjct: 245 -NCLL-----VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 261 IERE-------WL---------QA--GYPFQL----------RHRYSCYSPLRGKSQSPT 292
E +L + P +L + + + +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 293 FLLFLDCL--YQLQNQFVCSFEFSADFLILIFEHSYFSPYGTFLL---NSEKERVDENLS 347
L+ L + + F F I P L + K V ++
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHI---------PTILLSLIWFDVIKSDVMVVVN 409
Query: 348 T-RTSSLWSYVNR---------PDLLAQLKNPLYQVNNNLLHMAIDMVER-KLNKESPGG 396
SL V + P + +LK L N LH +I V+ + K
Sbjct: 410 KLHKYSL---VEKQPKESTISIPSIYLELKVKL--ENEYALHRSI--VDHYNIPKTFDSD 462
Query: 397 VIIIKCKD--FRVIMLGIDNTDHFNCIAQSLEDIVNMEVLKYKYAFYYRPLYPILEDGWK 454
+I D F ++ I L++I + E + + R ++ L+ +
Sbjct: 463 DLIPPYLDQYF------------YSHIGHHLKNIEHPE----RMTLF-RMVF--LDFRF- 502
Query: 455 IFSPEDEIIKICPIPEPEWRVTHCNEKYEVCSSYSRLLIVPNSITDDVIKESAKYRDLGR 514
+ E +I T N + ++ +L I D+ K +
Sbjct: 503 L---EQKIRHDS---------TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 515 FPVLCYK--YEAKSSILVRSS 533
F + +K + L+R +
Sbjct: 551 FLPKIEENLICSKYTDLLRIA 571
Score = 53.3 bits (127), Expect = 2e-07
Identities = 74/553 (13%), Positives = 154/553 (27%), Gaps = 166/553 (30%)
Query: 127 HMAIDMVERKLNKESPGGVIIIKCKDFRVIMLGIDNTDHFNCIAQSLEDIV-NMASNDVT 185
HM + E + + KD I+ F + V N DV
Sbjct: 6 HMDFETGEHQY-----------QYKD---IL------SVF------EDAFVDNFDCKDVQ 39
Query: 186 CSMDKWLSRLDGSSWMSNIKEILSCAHYVAQ------CLDQEGTTVL---VHGSEGLDST 236
LS+ + I I+ V+ L + ++ V ++
Sbjct: 40 DMPKSILSKEE-------IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 237 LVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYPFQLRH--RYSCYSPLRGKSQSPTFL 294
+++ + P T +R + F + R Y LR
Sbjct: 93 FLMSPIKTEQRQPSMMTRM-YIEQRDRLY-NDNQVFAKYNVSRLQPYLKLR--------- 141
Query: 295 LFLDCLYQLQNQFVCSFEFSADFLILIFEHSYFSPYG------TFLLNS--EKERVDENL 346
L +L+ A +++ G T++ +V +
Sbjct: 142 ---QALLELR---------PAKNVLI---------DGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 347 STRTSSLW---SYVNRPD-LLAQLKNPLYQVNNNLLHMAIDMVERKLNKESPGGVI--II 400
+ W N P+ +L L+ LYQ++ N + KL S + ++
Sbjct: 181 DFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 401 KCKDFRVIMLGIDNT------DHFN--CIAQSL---EDIVNMEVLKYKYAFYYRPLYPIL 449
K K + +L + N + FN C + L + L + L
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHIS-----L 291
Query: 450 EDGWKIFSPED------------------EIIKICP-----IPE--PEWRVTHCNEKYEV 484
+ +P++ E++ P I E + T N K+
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 485 CSSYSRLL-IVPNSITDDVIKESAKYRDLGRFP--------VLCYKYEAKSSILVRSSQP 535
C + ++ N + ++ + L FP +L + V
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKM--FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-- 407
Query: 536 LPGPTAKRCKADEKLLNGYLKSGKK---GIIIDTRTQTLAQSAKNKGGGMELEMF----- 587
+ L+ K I ++ + + + A ++ ++ +
Sbjct: 408 -----VNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR---SIVDHYNIPKT 458
Query: 588 YPQWRRVHKPVDK 600
+ + +D+
Sbjct: 459 FDSDDLIPPYLDQ 471
Score = 41.4 bits (96), Expect = 9e-04
Identities = 69/451 (15%), Positives = 122/451 (27%), Gaps = 146/451 (32%)
Query: 1 MSKSACACTAFSLMSPEGENWKKVKK----------LQSLIEREWLQAGYPFQLRHRYSC 50
++ C W +K LQ L Q + R +S
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----LYQIDPNWTSRSDHSS 221
Query: 51 YSPLRGKSQSPTFLLFLDCITSSAMEFAD--LIPISKLDGV-------TLSGAC------ 95
LR S L + + + L+ L V + +C
Sbjct: 222 NIKLRIHSIQAELRRLL-----KSKPYENCLLV----LLNVQNAKAWNAFNLSCKILLTT 272
Query: 96 -YKTPVDGTLCMTGHHLFLSSRKQGVEE---LWLLHMAIDMVERKLNKE----SPGGVII 147
+K D T H+ L + LL +D + L +E +P + I
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 148 I--KCKDFRVIMLGIDNTDHFNC------IAQSLEDI---------VNMA--SNDVTCSM 188
I +D DN H NC I SL + ++
Sbjct: 333 IAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 189 DKWLSRLDGSSWMSNIKE----ILSCAHYVAQCL---DQEGTTVLVHGSEGLDSTLVITS 241
LS + W IK +++ L + +T+ +
Sbjct: 390 -ILLSLI----WFDVIKSDVMVVVN--KLHKYSLVEKQPKESTISIPS------------ 430
Query: 242 LVQVMLNPECRTIRGL-QSLIEREWLQAGYP---FQLRH--RYSC----YSPLRGKSQSP 291
+ + L + L +S+++ + + + +Y + L+
Sbjct: 431 -IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPE 488
Query: 292 TFLLF---------------------------LDCLYQLQN--QFVC--SFEFSA----- 315
LF L+ L QL+ ++C ++
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 316 -DFLILIFEHSYFSPYGTFL---LNSEKERV 342
DFL I E+ S Y L L +E E +
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.6
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 27/55 (49%)
Query: 22 KKVKKLQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCITSSAME 76
+ +KKLQ+ L+ Y+ +P + + ME
Sbjct: 20 QALKKLQA-------------SLK----LYAD----DSAPALAI------KATME 47
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein,
structural genomics, NPPSFA, project on protein
structural and functional analyses; 1.67A {Homo sapiens}
Length = 151
Score = 28.3 bits (64), Expect = 4.6
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 199 SWMSNIKEIL-SCAHYVAQCLDQEGTTVLVHGSEGLD--STLVI 239
S ++ + A ++ + L Q G +LVH + G+ +TLV+
Sbjct: 61 SPAFDMSIHFQTAADFIHRALSQPGGKILVHCAVGVSRSATLVL 104
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 27.6 bits (62), Expect = 9.3
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 199 SWMSNIKEIL-SCAHYVAQCLDQEGTTVLVHGSEGLDS---TLVI 239
+ N+ A ++ Q L Q+ VLVH EG S TLVI
Sbjct: 91 TQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGY-SRSPTLVI 134
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.421
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,499,503
Number of extensions: 569399
Number of successful extensions: 1055
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1028
Number of HSP's successfully gapped: 25
Length of query: 613
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 514
Effective length of database: 3,937,614
Effective search space: 2023933596
Effective search space used: 2023933596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)