RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2517
         (613 letters)



>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 387

 Score =  229 bits (585), Expect = 5e-70
 Identities = 88/225 (39%), Positives = 130/225 (57%), Gaps = 8/225 (3%)

Query: 154 RVIMLGIDNTDHFNCIAQSLEDIVNMASNDVTCSMDKWLSRLDGSSWMSNIKEILSCAHY 213
            ++ L I N    + + +SL  +  +   +       WLS L+ + W+ +IK IL+ A  
Sbjct: 149 ELVFLDIHN---IHVMRESLRKLKEIVYPN--IEETHWLSNLESTHWLEHIKLILAGALR 203

Query: 214 VAQCLDQEGTTVLVHGSEGLDSTLVITSLVQVMLNPECRTIRGLQSLIEREWLQAGYPFQ 273
           +A  ++   T+V+VH S+G D T  +TSL  +ML+   RTIRG + L+E+EWL  G+ FQ
Sbjct: 204 IADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQ 263

Query: 274 LRHRYSCYSPLRGKSQSPTFLLFLDCLYQLQNQFVCSFEFSADFLILIFEHSYFSPYGTF 333
           LR  +   +      +SP FL F+DC++Q+  QF  +FEF+  FLI I +H Y   +GTF
Sbjct: 264 LRVGHGDKNH-ADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTF 322

Query: 334 LLNSEKERVDENLSTRTSSLWSYVNRPDLLAQLKNPLYQVNNNLL 378
           L NSE++R  ENL  RT SLWSY+N    L    NPLY   +N +
Sbjct: 323 LCNSEQQRGKENLPKRTVSLWSYINSQ--LEDFTNPLYGSYSNHV 365



 Score =  166 bits (421), Expect = 2e-46
 Identities = 63/167 (37%), Positives = 87/167 (52%), Gaps = 4/167 (2%)

Query: 450 EDGWKIFSPEDEIIKICPIPEPEWRVTHCNEKYEVCSSYSRLLIVPNSITDDVIKESAKY 509
           E+GWK++ P  E  +   IP   WR+T  NE+YE+C +Y  LL+VP +I D+ +K  A +
Sbjct: 5   ENGWKLYDPLLEYRRQG-IPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASF 63

Query: 510 RDLGRFPVLCYKYEAKSSILVRSSQPLPGPTAKRCKADEKLLNGYLKSG---KKGIIIDT 566
           R  GR PVL + +    + + R SQP+ G + KR K DEK L   + S     K  I D 
Sbjct: 64  RSRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDA 123

Query: 567 RTQTLAQSAKNKGGGMELEMFYPQWRRVHKPVDKHTVLLDSLAKFVE 613
           R    A + K KGGG E E  Y     V   +    V+ +SL K  E
Sbjct: 124 RPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKE 170



 Score = 56.1 bits (135), Expect = 5e-09
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 27  LQSLIEREWLQAGYPFQLRHRYSCYSPLRGKSQSPTFLLFLDCI 70
            + L+E+EWL  G+ FQLR  +   +      +SP FL F+DC+
Sbjct: 247 FEVLVEKEWLSFGHRFQLRVGHGDKNH-ADADRSPVFLQFIDCV 289


>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2,
           N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 125

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 96  YKTPVDGTLCMTGHHLFLSSRKQGVE-ELWLLHMAIDMVER----KLNKESPGGVIIIKC 150
           +   V GTL +T + L+  S ++     L      I+ VE+        E+  G +   C
Sbjct: 24  FTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYG-LETVC 82

Query: 151 KDFRVIMLGIDNTDH 165
           KD R +         
Sbjct: 83  KDIRNLRFAHKPEGR 97



 Score = 30.6 bits (69), Expect = 0.18
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 13/81 (16%)

Query: 372 QVNNNLLHMAIDMVER----KLNKESPGGVIIIKCKDFRVIMLGIDNTDH-----FNCIA 422
               +     I+ VE+        E+  G +   CKD R +              F  + 
Sbjct: 49  PFVLDASLGVINRVEKIGGASSRGENSYG-LETVCKDIRNLRFAHKPEGRTRRSIFENLM 107

Query: 423 QSLEDIVNMEVLKYKYAFYYR 443
           +    + N   L   +AF Y+
Sbjct: 108 KYAFPVSNNLPL---FAFEYK 125


>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 156

 Score = 30.2 bits (67), Expect = 0.36
 Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 5/130 (3%)

Query: 126 LHMAIDMVERKLNK-ESPGGVIIIKCKDFRVIMLGIDNTDHFNCIAQSLEDIVNMASNDV 184
           + +A +       +   P G  +I  KD  V+  G  N       A    +I  + +   
Sbjct: 13  MDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGH-NMRFQKGSATLHGEISTLENCGR 71

Query: 185 TCSMDKWLSRLDGSSWMSNIKEILSCAHYVAQCLDQEGTTVLVHGSEGLDSTLVITSLVQ 244
                   + L  +    ++       + + +C+  E       G + L +       V 
Sbjct: 72  LEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSKGEKYLQTRGHE---VV 128

Query: 245 VMLNPECRTI 254
           V+ +  C+ I
Sbjct: 129 VVDDERCKKI 138



 Score = 26.3 bits (57), Expect = 7.3
 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 378 LHMAIDMVERKLNK-ESPGGVIIIKCKDFRVIMLGIDNTDHFNC 420
           + +A +       +   P G  +I  KD  V+  G +       
Sbjct: 13  MDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGS 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,374,751
Number of extensions: 113803
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 11
Length of query: 613
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 522
Effective length of database: 1,158,166
Effective search space: 604562652
Effective search space used: 604562652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.0 bits)