BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2518
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 93/117 (79%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP 131
E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA SW+ KV E G+IP
Sbjct: 52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP 111
Query: 132 TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
T LVQNKIDLLD S + EEA+ L++ L R RTSVKED+NV+ +F+YL K L +
Sbjct: 112 TALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/52 (82%), Positives = 47/52 (90%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA SW+ KV
Sbjct: 52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV 103
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 8/156 (5%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G + ++ F+ ++F ++ + V K E GE+V+L +WDTAGQE F IT
Sbjct: 21 GKSSLLLRFAD---NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITST 77
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153
YYRG ++ + +SF W ++ C ++ +LV NK D ++ VV E+A
Sbjct: 78 YYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAY 137
Query: 154 LLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189
+ +G +L TS KE++NV +F C++EL
Sbjct: 138 KFAGQMGIQLFETSAKENVNVEEMF-----NCITEL 168
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVS 61
GE+V+L +WDTAGQE F IT YYRG ++ + +SF W +++
Sbjct: 55 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN 108
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
F + V E GE+V+L +WDTAGQE F +IT++YYR A A ++T+
Sbjct: 51 FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 110
Query: 110 RDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168
+SF W ++E ++ TVLV NKIDL ++ V+ + A+ S A + TS
Sbjct: 111 EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSA 170
Query: 169 KEDINVNSIFRYLTTKCLSELRQ 191
KE NV +F L + +SE RQ
Sbjct: 171 KESDNVEKLFLDLACRLISEARQ 193
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
GE+V+L +WDTAGQE F +IT++YYR A A ++T+ +SF W
Sbjct: 72 GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 120
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D++ ++ + V K E + V+L +WDTAGQE F IT +YYRGA +I +
Sbjct: 32 DTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 91
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
DRDSF+ W +++ E + +LV NK DL+ + VV +E L+ + G + + T
Sbjct: 92 TDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIET 151
Query: 167 SVKEDINVNSIFR 179
S K NV F
Sbjct: 152 SAKNAYNVEQAFH 164
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 8/176 (4%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
+R + + + +D+I K G ++C++ D F + + + K
Sbjct: 4 LRTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLV--RFVEDKFNPSFITTIGIDFKIKT 61
Query: 67 KECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV-EN 125
+ G++V+L LWDTAGQE F IT AYYRGA ++ + D +F W V E+
Sbjct: 62 VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH 121
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
E +LV NK D ++ VV ++ + L++ LG + +S K D NVN IF L
Sbjct: 122 ANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
G++V+L LWDTAGQE F IT AYYRGA ++ + D +F W +T
Sbjct: 64 INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW------FKT 117
Query: 66 IKECEGEEVRLML 78
+ E +E +L+L
Sbjct: 118 VNEHANDEAQLLL 130
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D F + + + K + G++V+L LWDTAGQE F IT AYYRGA ++ +
Sbjct: 30 DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDV 89
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D +F W V E+ E +LV NK D ++ VV ++ + L++ LG + +
Sbjct: 90 TDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIES 148
Query: 167 SVKEDINVNSIFRYL 181
S K D NVN IF L
Sbjct: 149 SAKNDDNVNEIFFTL 163
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
G++V+L LWDTAGQE F IT AYYRGA ++ + D +F W +T
Sbjct: 51 INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW------FKT 104
Query: 66 IKECEGEEVRLML 78
+ E +E +L+L
Sbjct: 105 VNEHANDEAQLLL 117
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D+F + + + K E +G+ ++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 29 DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDI 88
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + M T
Sbjct: 89 TNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMET 148
Query: 167 SVKEDINVNSIF 178
S K +INV + F
Sbjct: 149 SAKANINVENAF 160
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D+F + + + K E +G+ ++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDI 90
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + M T
Sbjct: 91 TNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMET 150
Query: 167 SVKEDINVNSIF 178
S K +INV + F
Sbjct: 151 SAKANINVENAF 162
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF A + + K + ++L +WDTAGQE + IT AYYRGA ++ +
Sbjct: 45 DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDI 104
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+++SF A W +++ + +LV NK DL D+ VV E+ L+ LG
Sbjct: 105 ANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA 164
Query: 167 SVKEDINVNSIFRYLT 182
S KE+INV +F L
Sbjct: 165 SAKENINVKQVFERLV 180
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 7/164 (4%)
Query: 20 GQEEFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVR 75
G E+D + K G ++C++ D++ ++ + V K E +G+ ++
Sbjct: 18 GSPEYDYLFKLLLIGDSGVGKSCLLL--RFADDTYTESYISTIGVDFKIRTIELDGKTIK 75
Query: 76 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVL 134
L +WDTAGQE F IT +YYRGA ++ + D++SF W +++ E + +L
Sbjct: 76 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 135
Query: 135 VQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
V NK DL + VV A + +LG + TS K NV F
Sbjct: 136 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 179
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W
Sbjct: 70 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 119
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D F + + + K + G++V+L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 26 DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDI 85
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D +F W V E+ E +LV NK D ++ VV ++ + L++ LG + +
Sbjct: 86 TDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIES 144
Query: 167 SVKEDINVNSIFRYL 181
S K D NVN IF L
Sbjct: 145 SAKNDDNVNEIFFTL 159
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
G++V+L +WDTAGQE F IT AYYRGA ++ + D +F W +T
Sbjct: 47 INGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW------FKT 100
Query: 66 IKECEGEEVRLML 78
+ E +E +L+L
Sbjct: 101 VNEHANDEAQLLL 113
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D F + + + K + G++V+L LWDTAGQE F IT AYYRGA ++ +
Sbjct: 26 DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDV 85
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D +F W V E+ E +LV NK D + VV ++ + L++ LG + +
Sbjct: 86 TDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIES 144
Query: 167 SVKEDINVNSIFRYL 181
S K D NVN IF L
Sbjct: 145 SAKNDDNVNEIFFTL 159
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
G++V+L LWDTAGQE F IT AYYRGA ++ + D +F W +T
Sbjct: 47 INGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQW------FKT 100
Query: 66 IKECEGEEVRLML 78
+ E +E +L+L
Sbjct: 101 VNEHANDEAQLLL 113
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 23 EFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLML 78
E+DA+ K G ++C++ D++ ++ + V K E +G+ ++L +
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLL--RFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 59
Query: 79 WDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVLVQN 137
WDTAGQE F IT +YYRGA ++ + D++SF W +++ E + +LV N
Sbjct: 60 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 119
Query: 138 KIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
K DL + VV A + +LG + TS K NV F
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W
Sbjct: 51 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 100
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D++ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA ++ +
Sbjct: 56 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 115
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D++SF W +++ E + +LV NK DL + VV A + +LG + T
Sbjct: 116 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 175
Query: 167 SVKEDINVNSIF 178
S K NV F
Sbjct: 176 SAKNATNVEQSF 187
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W
Sbjct: 78 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 127
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D++ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA ++ +
Sbjct: 39 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 98
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D++SF W +++ E + +LV NK DL + VV A + +LG + T
Sbjct: 99 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 158
Query: 167 SVKEDINVNSIF 178
S K NV F
Sbjct: 159 SAKNATNVEQSF 170
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W
Sbjct: 61 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 110
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D++ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA ++ +
Sbjct: 29 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 88
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D++SF W +++ E + +LV NK DL + VV A + +LG + T
Sbjct: 89 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 148
Query: 167 SVKEDINVNSIF 178
S K NV F
Sbjct: 149 SAKNATNVEQSF 160
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W
Sbjct: 51 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 100
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D++ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA ++ +
Sbjct: 22 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 81
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D++SF W +++ E + +LV NK DL + VV A + +LG + T
Sbjct: 82 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 141
Query: 167 SVKEDINVNSIF 178
S K NV F
Sbjct: 142 SAKNATNVEQSF 153
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W
Sbjct: 44 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 93
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D++ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA ++ +
Sbjct: 39 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 98
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D++SF W +++ E + +LV NK DL + VV A + +LG + T
Sbjct: 99 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 158
Query: 167 SVKEDINVNSIF 178
S K NV F
Sbjct: 159 SAKNATNVEQSF 170
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W
Sbjct: 61 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 110
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D F + + + K + G++V+L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 26 DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDI 85
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D +F W V E+ E +LV NK D + VV ++ + L++ LG + +
Sbjct: 86 TDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIES 144
Query: 167 SVKEDINVNSIFRYL 181
S K D NVN IF L
Sbjct: 145 SAKNDDNVNEIFFTL 159
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
G++V+L +WDTAGQE F IT AYYRGA ++ + D +F W +T
Sbjct: 47 INGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQW------FKT 100
Query: 66 IKECEGEEVRLML 78
+ E +E +L+L
Sbjct: 101 VNEHANDEAQLLL 113
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D++ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA ++ +
Sbjct: 32 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 91
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D++S+ W +++ E + +LV NK DL + VV A + +LG + T
Sbjct: 92 TDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLET 151
Query: 167 SVKEDINVNSIF 178
S K NV F
Sbjct: 152 SAKNATNVEQAF 163
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++S+ W
Sbjct: 53 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQW 103
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D++ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA ++ +
Sbjct: 32 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 91
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D++S+ W +++ E + +LV NK DL + VV A + +LG + T
Sbjct: 92 TDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLET 151
Query: 167 SVKEDINVNSIF 178
S K NV F
Sbjct: 152 SAKNATNVEQAF 163
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++S+ W
Sbjct: 53 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQW 103
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF A + + K + ++L +WDTAGQE + IT AYYRGA ++ +
Sbjct: 28 DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI 87
Query: 108 IDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ +SF A W +++ + V LV NK D+ D+ VV+ E L+ LG
Sbjct: 88 TNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEA 147
Query: 167 SVKEDINVNSIFRYL 181
S K++INV F L
Sbjct: 148 SAKDNINVKQTFERL 162
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 48 DSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F A + + K +T+ E + V+L +WDTAGQE + IT AYYRGA ++ +
Sbjct: 46 DTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 104
Query: 107 TIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ +SF A W +++ + +LV NK D+ ++ VV E+ LL+ LG
Sbjct: 105 ITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFE 164
Query: 166 TSVKEDINVNSIFRYL 181
S KE+I+V F L
Sbjct: 165 ASAKENISVRQAFERL 180
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
+ + + + +G +V+L +WDTAGQE F ++T AYYR A A ++ + ++ SF+ +W
Sbjct: 46 IDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW 105
Query: 120 KMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
++ E ++ +L+ NK+D + VV E+ + L++ G M TS K +NV+ F
Sbjct: 106 LTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165
Query: 179 RYLTTKCLSELRQQ 192
T EL+++
Sbjct: 166 ----TAIAKELKRR 175
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
+G +V+L +WDTAGQE F ++T AYYR A A ++ + ++ SF+ +W +
Sbjct: 55 VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE------ 108
Query: 66 IKECEGEEVRLML 78
I E +V LML
Sbjct: 109 IHEYAQHDVALML 121
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 35 AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAY 94
++C++ T R F+ H + V + +G++++L +WDTAGQE F +IT++Y
Sbjct: 22 GKSCLLLQFTDKR--FQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSY 79
Query: 95 YRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153
YRGA ++ + RD+F +W ++ + +L+ NK DL + V EE +
Sbjct: 80 YRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGE 139
Query: 154 LLSRALGCRLMRTSVKEDINVNSIF 178
+R G M TS K NV F
Sbjct: 140 AFAREHGLIFMETSAKTASNVEEAF 164
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G++++L +WDTAGQE F +IT++YYRGA ++ + RD+F +W
Sbjct: 54 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 104
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 35 AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAY 94
++C++ T R F+ H + V + +G++++L +WDTAGQE F +IT++Y
Sbjct: 33 GKSCLLLQFTDKR--FQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90
Query: 95 YRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153
YRGA ++ + R++F SW ++ + +L+ NK DL + V EE +
Sbjct: 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGE 150
Query: 154 LLSRALGCRLMRTSVKEDINVNSIF 178
+R G M TS K NV F
Sbjct: 151 AFAREHGLIFMETSAKTACNVEEAF 175
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
M+N +G++++L +WDTAGQE F +IT++YYRGA ++ + R++F SW
Sbjct: 62 MVN--IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSW 115
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D++ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA ++ +
Sbjct: 31 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 90
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D++SF W +++ E + +LV K DL + VV A + +LG + T
Sbjct: 91 TDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLET 150
Query: 167 SVKEDINVNSIF 178
S K NV F
Sbjct: 151 SAKNATNVEQSF 162
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W
Sbjct: 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 102
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF+ + + + E +RL LWDTAGQE F ++ +Y R + A V+ +
Sbjct: 29 DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDI 88
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ +SF+ W V E G ++ +LV NK DL D+ V+ EE + ++ L + T
Sbjct: 89 TNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIET 148
Query: 167 SVKEDINVNSIFR 179
S K NV +FR
Sbjct: 149 SAKAGYNVKQLFR 161
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
E +RL LWDTAGQE F ++ +Y R + A V+ + + +SF+ W V +R
Sbjct: 50 LEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER- 108
Query: 66 IKECEGEEVRLML 78
G +V +ML
Sbjct: 109 -----GSDVIIML 116
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G ++ FS D++ + + V K E +G+ V+L +WDTAGQE F IT +
Sbjct: 20 GKSCLLLRFSD---DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS 76
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEA 152
YYRG+ +I + D++SF W +++ + +LV NK DL D+ VV + A
Sbjct: 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVA 136
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ 192
+ A + TS + NV F + + + QQ
Sbjct: 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ V+L +WDTAGQE F IT +YYRG+ +I + D++SF W
Sbjct: 53 DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 102
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 1/140 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF+ + + + E VRL LWDTAGQE F ++ +Y R + V+ +
Sbjct: 25 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 84
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ +SF+ W V E G ++ +LV NK DL D+ + EE + ++ L + T
Sbjct: 85 TNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIET 144
Query: 167 SVKEDINVNSIFRYLTTKCL 186
S K NV +FR + + L
Sbjct: 145 SAKTGYNVKQLFRRVASALL 164
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
E VRL LWDTAGQE F ++ +Y R + V+ + + +SF+ W V +R
Sbjct: 46 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTER- 104
Query: 66 IKECEGEEVRLML 78
G +V +ML
Sbjct: 105 -----GSDVIIML 112
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G ++ FS D++ + + V K E +G+ V+L +WDTAGQE F IT +
Sbjct: 20 GKSCLLLRFSD---DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS 76
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEA 152
YYRG+ +I + D++SF W +++ + +LV NK DL D+ VV + A
Sbjct: 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVA 136
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ 192
+ A + TS + NV F + + + QQ
Sbjct: 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ V+L +WDTAGQE F IT +YYRG+ +I + D++SF W
Sbjct: 53 DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 102
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 35 AQACVITFSTIDR---DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT 91
+ CV S + R + F H ++ S G+ V L +WDTAGQE F A+
Sbjct: 27 GEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 86
Query: 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPE 150
YYR + ++ + D DSF+ +W ++ G EI +V NKIDL + V+ +
Sbjct: 87 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 146
Query: 151 EADLLSRALGCRLMRTSVKEDINVNSIF 178
EA+ + ++G + TS K++ + +F
Sbjct: 147 EAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF+ + + + E VRL LWDTAGQE F ++ +Y R + V+ +
Sbjct: 37 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 96
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ +SF W V E G ++ +LV NK DL D+ V+ EE + ++ L + T
Sbjct: 97 TNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 156
Query: 167 SVKEDINVNSIFR 179
S K NV +FR
Sbjct: 157 SAKAGYNVKQLFR 169
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 25/120 (20%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--------- 56
E VRL LWDTAGQE F ++ +Y R + V+ + + +SF W
Sbjct: 58 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG 117
Query: 57 ----------KMKVSIKRTIKECEGE----EVRLMLWDTAGQEEFDAITKAYYRGAQACV 102
K +S KR + EGE E+ +M +T+ + ++ K +R A +
Sbjct: 118 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV--KQLFRRVAAAL 175
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF A + + K + ++L +WDTAG E + IT AYYRGA ++ +
Sbjct: 31 DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDI 90
Query: 108 IDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ +SF A W +++ + V LV NK D D+ VV+ E L+ LG
Sbjct: 91 TNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEA 150
Query: 167 SVKEDINVNSIFRYL 181
S K++INV F L
Sbjct: 151 SAKDNINVKQTFERL 165
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 35 AQACVITFSTIDR---DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT 91
+ CV S + R + F H ++ S G+ V L +WDTAGQE F A+
Sbjct: 13 GEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPE 150
YYR + ++ + D DSF+ +W ++ G EI +V NKIDL + V+ +
Sbjct: 73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 132
Query: 151 EADLLSRALGCRLMRTSVKEDINVNSIF 178
EA+ + ++G + TS K++ + +F
Sbjct: 133 EAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF+ + + + E VRL LWDTAGQE F ++ +Y R + V+ +
Sbjct: 24 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 83
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ +SF+ W V E G ++ +LV NK DL D+ V+ EE + ++ L + T
Sbjct: 84 TNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIET 143
Query: 167 SVKEDINVNSIFR 179
S K NV +FR
Sbjct: 144 SAKAGYNVKQLFR 156
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
E VRL LWDTAGQE F ++ +Y R + V+ + + +SF+ W V +R
Sbjct: 45 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTER- 103
Query: 66 IKECEGEEVRLML 78
G +V +ML
Sbjct: 104 -----GSDVIIML 111
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G ++ FS D++ + + V K E +G+ V+L +WDTAGQE F IT +
Sbjct: 33 GKSCLLLRFSD---DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS 89
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEA 152
YYRG+ +I + D++SF W +++ + +LV NK DL D+ VV + A
Sbjct: 90 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVA 149
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIF 178
+ A + TS + NV F
Sbjct: 150 KEFADANKMPFLETSALDSTNVEDAF 175
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ V+L +WDTAGQE F IT +YYRG+ +I + D++SF W
Sbjct: 66 DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 115
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 35 AQACVITFSTIDR---DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT 91
+ CV S + R + F H + S G+ V L +WDTAGQE F A+
Sbjct: 13 GEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPE 150
YYR + ++ + D DSF+ +W ++ G EI +V NKIDL + V+ +
Sbjct: 73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 132
Query: 151 EADLLSRALGCRLMRTSVKEDINVNSIF 178
EA+ + ++G + TS K++ + +F
Sbjct: 133 EAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAGQE + ++ YYRGA A +I F ++ SFE A W +++ + +
Sbjct: 61 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVM 120
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
L NK DLLD V E+A ++ G M TS K NV IF
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGA A +I F ++ SFE A W
Sbjct: 61 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKW 106
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 2/144 (1%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D+F A + V K E G+++RL +WDTAGQE F++IT AYYR A+ ++ +
Sbjct: 49 DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDI 108
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDL-LDQSVVAPEEADLLSRALGCRLMR 165
+++F+ W ++ E +LV NK+D D+ + + + G R
Sbjct: 109 TKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCE 168
Query: 166 TSVKEDINVNSIFRYLTTKCLSEL 189
S K++ NV+ IF L L ++
Sbjct: 169 ASAKDNFNVDEIFLKLVDDILKKM 192
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+++RL +WDTAGQE F++IT AYYR A+ ++ + +++F+ W
Sbjct: 72 GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKW 120
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF+ + + + E +RL LWDTAG E F ++ +Y R + A V+ +
Sbjct: 36 DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDI 95
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ +SF+ W V E G ++ +LV NK DL D+ V+ EE + ++ L + T
Sbjct: 96 TNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIET 155
Query: 167 SVKEDINVNSIFR 179
S K NV +FR
Sbjct: 156 SAKAGYNVKQLFR 168
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 24/128 (18%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--------- 56
E +RL LWDTAG E F ++ +Y R + A V+ + + +SF+ W
Sbjct: 57 LEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 116
Query: 57 ----------KMKVSIKRTIKECEGE----EVRLMLWDTAGQEEFDAITKAYYRGAQACV 102
K ++ KR + EGE E+ +M +T+ + ++ + + + R A A
Sbjct: 117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN-VKQLFRRVAAALP 175
Query: 103 ITFSTIDR 110
ST DR
Sbjct: 176 GMESTQDR 183
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAGQE + ++ YYRGAQA ++ + ++++F A +W +++ + I
Sbjct: 57 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI 116
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL ++ +V EEA + M TS K +NVN +F + K
Sbjct: 117 ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK 168
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGAQA ++ + ++++F A +W
Sbjct: 57 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTW 102
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF+ + + + E VRL LWDTAG E F ++ +Y R + V+ +
Sbjct: 29 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDI 88
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ +SF+ W V E G ++ +LV NK DL D+ V+ EE + ++ L + T
Sbjct: 89 TNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIET 148
Query: 167 SVKEDINVNSIFR 179
S K NV +FR
Sbjct: 149 SAKAGYNVKQLFR 161
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
E VRL LWDTAG E F ++ +Y R + V+ + + +SF+ W V +R
Sbjct: 50 LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTER- 108
Query: 66 IKECEGEEVRLML 78
G +V +ML
Sbjct: 109 -----GSDVIIML 116
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF+ + + + E VRL LWDTAG E F ++ +Y R + V+ +
Sbjct: 39 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDI 98
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ +SF+ W V E G ++ +LV NK DL D+ V+ EE + ++ L + T
Sbjct: 99 TNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIET 158
Query: 167 SVKEDINVNSIFR 179
S K NV +FR
Sbjct: 159 SAKAGYNVKQLFR 171
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 24/128 (18%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--------- 56
E VRL LWDTAG E F ++ +Y R + V+ + + +SF+ W
Sbjct: 60 LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 119
Query: 57 ----------KMKVSIKRTIKECEGE----EVRLMLWDTAGQEEFDAITKAYYRGAQACV 102
K ++ KR + EGE E+ +M +T+ + ++ + + + R A A
Sbjct: 120 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN-VKQLFRRVAAALP 178
Query: 103 ITFSTIDR 110
ST DR
Sbjct: 179 GMESTQDR 186
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAGQE + ++ YYRGAQA ++ + + D+F A +W +++ + I
Sbjct: 54 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 113
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL + V +EA + M TS K +NVN IF + K
Sbjct: 114 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 165
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGAQA ++ + + D+F A +W
Sbjct: 54 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 99
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---- 123
E +G V L +WDTAGQE F ++ +YRGA C++TFS DR SFE +W+ +
Sbjct: 50 EVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYA 109
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ P V++ NK+D D+ V E + TS K+D NV F
Sbjct: 110 DVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAV 169
Query: 183 TKCLSELRQQE 193
+ L+ Q E
Sbjct: 170 RQVLAVEEQLE 180
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 1 MINRICE--GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
+NR E G V L +WDTAGQE F ++ +YRGA C++TFS DR SFE +W+
Sbjct: 44 FLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQK 103
Query: 59 KVSIKRTIKECE 70
+ +K+ E
Sbjct: 104 EFIYYADVKDPE 115
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAGQE + ++ YYRGAQA ++ + + D+F A +W +++ + I
Sbjct: 52 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 111
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL + V +EA + M TS K +NVN IF + K
Sbjct: 112 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 163
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGAQA ++ + + D+F A +W
Sbjct: 52 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 97
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W +++ + I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL ++ V +EA + M TS K +NVN IF + K
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 100
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W +++ + I
Sbjct: 56 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 115
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL ++ V +EA + M TS K +NVN IF + K
Sbjct: 116 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 167
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W
Sbjct: 56 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 101
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W +++ + I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL ++ V +EA + M TS K +NVN IF + K
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 100
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W +++ + I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL ++ V +EA + M TS K +NVN IF + K
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 100
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W +++ + I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL ++ V +EA + M TS K +NVN IF + K
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 100
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W +++ + I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL ++ V +EA + M TS K +NVN IF + K
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 100
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 67 KEC--EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV- 123
K+C + RL + DTAGQEEF A+ + Y R + ++ FS DR SFE + ++ ++
Sbjct: 44 KQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQIL 103
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
+ E P +L+ NK DL Q V EE L+R L M S K +NV+ F L
Sbjct: 104 RVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL 162
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W +++ + I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL ++ V +EA + M TS K +NVN IF + K
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 100
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 58 MKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH 117
+ V I E G++++L +WDTAGQE F A+T++YYRGA ++ + R ++
Sbjct: 48 IGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS 107
Query: 118 SWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176
SW N +L+ NK DL Q V EEA + G + S K NV
Sbjct: 108 SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 167
Query: 177 IF 178
F
Sbjct: 168 AF 169
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 4 RICE--GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
RI E G++++L +WDTAGQE F A+T++YYRGA ++ + R ++ SW
Sbjct: 55 RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 109
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
+D F+ S + S C E + ++WDTAGQE F ++ YYRG+ A VI +
Sbjct: 45 QDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYD 104
Query: 107 TIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+DSF W +++ E I + NK DL D V ++A + ++G ++
Sbjct: 105 ITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVE 164
Query: 166 TSVKEDINVNSIFRYLT 182
TS K IN+ +F+ ++
Sbjct: 165 TSAKNAINIEELFQGIS 181
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
C E + ++WDTAGQE F ++ YYRG+ A VI + +DSF W
Sbjct: 67 CGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKW 117
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 69 CEGEEVRLM-LWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---- 123
+G++V M +WDTAGQE F ++ A+YRGA CV+ + + SFE SW+ +
Sbjct: 52 VDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA 111
Query: 124 -ENECGEIPTVLVQNKIDLLD-QSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFRY 180
N P V++ NKID + + +V+ + A L+++LG L TS K INV++ F
Sbjct: 112 NVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEE 171
Query: 181 LTTKCLSE 188
+ L +
Sbjct: 172 IARSALQQ 179
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 6 CEGEEVRLM-LWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 57
+G++V M +WDTAGQE F ++ A+YRGA CV+ + + SFE SW+
Sbjct: 52 VDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWR 104
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 29 KAYYRGAQACVITFSTIDR---DSFEAAHSWKMKVS-IKRTIKECEGEEVRLMLWDTAGQ 84
K + G QA T S I R D+F+ + + + + +T+ EG VRL LWDTAGQ
Sbjct: 3 KLVFLGEQAVGKT-SIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGP-VRLQLWDTAGQ 60
Query: 85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLD 143
E F ++ +Y R + A ++ + +R SFE W + NE G ++ LV NK DL D
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 120
Query: 144 QSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
V EE ++ TS K N+ +F+ +K
Sbjct: 121 LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
VRL LWDTAGQE F ++ +Y R + A ++ + +R SFE W
Sbjct: 50 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 95
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 14/143 (9%)
Query: 53 AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
A S++ KV + +GEEV++ + DTAG E++ AI Y+R + ++ FS + +S
Sbjct: 41 ADSYRKKVVL-------DGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHES 93
Query: 113 FEAAHSWK---MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
F A ++ ++V+ E +IP ++V NK DL ++ V EEA + G + + TS K
Sbjct: 94 FTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAK 153
Query: 170 EDINVNSIF----RYLTTKCLSE 188
NV+ +F R + TK +SE
Sbjct: 154 TRANVDKVFFDLMREIRTKKMSE 176
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GEEV++ + DTAG E++ AI Y+R + ++ FS + +SF A ++ ++
Sbjct: 49 VLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQI 104
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 14/143 (9%)
Query: 53 AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
A S++ KV + +GEEV++ + DTAG E++ AI Y+R + ++ FS + +S
Sbjct: 37 ADSYRKKVVL-------DGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHES 89
Query: 113 FEAAHSWK---MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
F A ++ ++V+ E +IP ++V NK DL ++ V EEA + G + + TS K
Sbjct: 90 FTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAK 149
Query: 170 EDINVNSIF----RYLTTKCLSE 188
NV+ +F R + TK +SE
Sbjct: 150 TRANVDKVFFDLMREIRTKKMSE 172
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GEEV++ + DTAG E++ AI Y+R + ++ FS + +SF A ++ ++
Sbjct: 45 VLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQI 100
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G + ++ F+ D+F+ + + V K +G + +L +WDTAGQE F +T +
Sbjct: 27 GKSSLLLRFTD---DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPS 83
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKID 140
YYRGAQ ++ + RD+F +W ++E C +I LV NKID
Sbjct: 84 YYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G + +L +WDTAGQE F +T +YYRGAQ ++ + RD+F +W
Sbjct: 59 VDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNW 109
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN 125
I E G++++L +WDTAGQ F A+T++YYRGA ++ + R ++ SW N
Sbjct: 71 IIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 130
Query: 126 ECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
+L+ NK DL Q V EEA + G + S K NV F
Sbjct: 131 LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 184
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 4 RICE--GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
RI E G++++L +WDTAGQ F A+T++YYRGA ++ + R ++ SW
Sbjct: 70 RIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 124
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPT 132
V+ +WDTAGQE F ++ YYR AQA ++ + SF A W ++ E +I
Sbjct: 52 VKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIII 111
Query: 133 VLVQNKIDLLDQS---VVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
LV NKID L + VA EE + L+ G TS K NVN +F
Sbjct: 112 ALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE F ++ YYR AQA ++ + SF A W
Sbjct: 52 VKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHW 97
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAG E + ++ YYRGAQA ++ + + D+F A +W +++ + I
Sbjct: 54 VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 113
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL + V +EA + M TS K +NVN IF + K
Sbjct: 114 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 165
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAG E + ++ YYRGAQA ++ + + D+F A +W
Sbjct: 54 VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 99
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W +++ + I
Sbjct: 56 VKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 115
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL ++ V +EA + TS K NVN IF + K
Sbjct: 116 ALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKK 167
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W
Sbjct: 56 VKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNW 101
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
V+ +WDTAG E + ++ YYRGAQA ++ + + +SF A +W +++ + I
Sbjct: 54 VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 113
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
L NK DL ++ V +EA + M TS K +NVN IF + K
Sbjct: 114 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 165
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAG E + ++ YYRGAQA ++ + + +SF A +W
Sbjct: 54 VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 99
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D++ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA ++ +
Sbjct: 21 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 80
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDL 141
D++SF W +++ E + +LV NK DL
Sbjct: 81 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W ++
Sbjct: 43 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 96
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---- 123
E +G V + +WDTAGQE F ++ +YRG+ C++TFS D SF+ +WK +
Sbjct: 52 EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYA 111
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFRYL 181
E P V++ NKID+ ++ V+ EEA R G TS K+ NV + F
Sbjct: 112 DVKEPESFPFVILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 170
Query: 182 TTKCLS 187
+ L+
Sbjct: 171 VRRVLA 176
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
+G V + +WDTAGQE F ++ +YRG+ C++TFS D SF+ +WK + +
Sbjct: 54 DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV 113
Query: 67 KECE 70
KE E
Sbjct: 114 KEPE 117
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---- 123
E +G V + +WDTAGQE F ++ +YRG+ C++TFS D SF+ +WK +
Sbjct: 50 EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYA 109
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFRYL 181
E P V++ NKID+ ++ V+ EEA R G TS K+ NV + F
Sbjct: 110 DVKEPESFPFVILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168
Query: 182 TTKCLS 187
+ L+
Sbjct: 169 VRRVLA 174
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
+G V + +WDTAGQE F ++ +YRG+ C++TFS D SF+ +WK + +
Sbjct: 52 DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV 111
Query: 67 KECE 70
KE E
Sbjct: 112 KEPE 115
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
RT+ E EG+ ++ +WDTAGQE + AIT AYYRGA +I + S+E + W ++
Sbjct: 53 RTL-EIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSEL 111
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
EN + L+ NK DL V EE+ ++ TS NV+ F L
Sbjct: 112 RENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171
Query: 183 TKCLSELRQQE---EEYSINGN 201
++ + + + S NGN
Sbjct: 172 NTIYQKVSKHQMDLGDSSANGN 193
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
EG+ ++ +WDTAGQE + AIT AYYRGA +I + S+E + W
Sbjct: 58 EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW 107
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAGQE+F + YY AQ +I F
Sbjct: 35 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 95 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE+F + YY AQ +I F R +++ +W
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAGQE+F + YY AQ +I F
Sbjct: 35 FEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 95 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE+F + YY AQ +I F R +++ +W
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAGQE+F + YY AQ +I F
Sbjct: 28 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 87
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 88 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 145
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 146 SNYNFEKPFLWLARKLIGD 164
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE+F + YY AQ +I F R +++ +W
Sbjct: 52 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 97
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAGQE+F + YY AQ +I F
Sbjct: 35 FEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 95 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE+F + YY AQ +I F R +++ +W
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
+ +G+ ++ +WDTAGQE + AIT AYYRGA ++ + ++E W ++ +
Sbjct: 63 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 122
Query: 128 -GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
I +LV NK DL V +EA + G + TS + NV + F+ + T+
Sbjct: 123 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++ +WDTAGQE + AIT AYYRGA ++ + ++E W
Sbjct: 64 VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 114
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAGQE+F + YY AQ +I F
Sbjct: 35 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 95 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE+F + YY AQ +I F R +++ +W
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNW 104
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAGQE+F + YY AQ +I F
Sbjct: 35 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 95 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE+F + YY AQ +I F R +++ +W
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
+ +G+ ++ +WDTAGQE + AIT AYYRGA ++ + ++E W ++ +
Sbjct: 72 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 131
Query: 128 -GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
I +LV NK DL V +EA + G + TS + NV + F+ + T+
Sbjct: 132 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++ +WDTAGQE + AIT AYYRGA ++ + ++E W
Sbjct: 73 VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 123
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAGQE+F + YY AQ +I F
Sbjct: 40 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 99
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 100 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 157
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 158 SNYNFEKPFLWLARKLIGD 176
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE+F + YY AQ +I F R +++ +W
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 109
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAGQE+F + YY AQ +I F
Sbjct: 35 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 95 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE+F + YY AQ +I F R +++ +W
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAGQE+F + YY AQ +I F
Sbjct: 35 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 95 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE+F + YY AQ +I F R +++ +W
Sbjct: 59 IKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 22 EEFDAITKAYYRG----AQACVIT-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRL 76
E++D + K G + CV+ F T +F + V E +G+ V+L
Sbjct: 24 EQYDFLFKLVLVGDASVGKTCVVQRFKT---GAFSERQGSTIGVDFTMKTLEIQGKRVKL 80
Query: 77 MLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLV 135
+WDTAGQE F IT++YYR A ++ + R SF + W V G I +L+
Sbjct: 81 QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI 140
Query: 136 QNKIDLLDQSVVAPEEADLLSRALGCR-LMRTSVKEDINVNSIFRYLTTKCL 186
NK DL + V+ EA L+ + TS K+ NV F + T+ +
Sbjct: 141 GNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ V+L +WDTAGQE F IT++YYR A ++ + R SF + W
Sbjct: 74 QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHW 123
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 3/169 (1%)
Query: 20 GQEEFDAITKAYYRGAQACVIT--FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLM 77
G +E+D + K G + S R+ F + V + +G+ ++
Sbjct: 1 GSDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 60
Query: 78 LWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC-GEIPTVLVQ 136
+WDTAG E + AIT AYYRGA ++ + ++E W ++ + I +LV
Sbjct: 61 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 120
Query: 137 NKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
NK DL V +EA + G + TS + NV + F+ + T+
Sbjct: 121 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++ +WDTAG E + AIT AYYRGA ++ + ++E W
Sbjct: 52 VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 102
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAGQE++ + YY AQ +I F
Sbjct: 35 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 95 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE++ + YY AQ +I F R +++ +W
Sbjct: 59 IKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 49 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 108
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 109 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 168
Query: 174 VNSIFRYLTTKCLSELRQQEEEYS 197
V +F T L R +++ S
Sbjct: 169 VREVFEMATRAALQARRGKKKSGS 192
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 51 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 3/155 (1%)
Query: 42 FSTIDRDSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100
S RD F + V ++I+ + ++ +WDTAGQE + AIT AYYRGA
Sbjct: 24 LSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVG 83
Query: 101 CVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL 159
++ + ++SFE W ++ +N I +LV NK DL V+ +A ++
Sbjct: 84 ALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVINDNDATQYAKKE 143
Query: 160 GCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEE 194
+ TS E NV F L + + +RQ+++
Sbjct: 144 KLAFIETSALEATNVELAFHQLLNEIYN-VRQKKQ 177
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE + AIT AYYRGA ++ + ++SFE W
Sbjct: 57 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKW 102
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---- 123
E +G V + +WDTAGQE F ++ +YRG+ C++TFS D SF+ +WK +
Sbjct: 54 EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYA 113
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIF 178
E P V++ NK D+ ++ V+ EEA + G TS K+ NV + F
Sbjct: 114 DVKEPESFPFVILGNKTDIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
+G V + +WDTAGQE F ++ +YRG+ C++TFS D SF+ +WK + +
Sbjct: 56 DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV 115
Query: 67 KECE 70
KE E
Sbjct: 116 KEPE 119
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 49 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 108
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 109 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 168
Query: 174 VNSIFRYLTTKCLSELRQQEE 194
V +F T L R +++
Sbjct: 169 VREVFEMATRAALQARRGKKK 189
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 51 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA-AHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 106
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 174 VNSIFRYLTTKCLSELRQQEE 194
V +F T L R +++
Sbjct: 167 VREVFEMATRAALQARRGKKK 187
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 49 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 50 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 109
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 110 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 169
Query: 174 VNSIFRYLTTKCLSELRQQEE 194
V +F T L R +++
Sbjct: 170 VREVFEMATRAALQARRGKKK 190
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 52 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 96
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 58 MKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH 117
+ V + + ++ +WDTAGQE+F + YY AQ +I F R +++
Sbjct: 48 LGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 107
Query: 118 SWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
+W + C IP VL NK+D+ D+ V A ++ + R + S K + N
Sbjct: 108 NWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKP 165
Query: 178 FRYLTTKCLSE 188
F +L K + +
Sbjct: 166 FLWLARKLIGD 176
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE+F + YY AQ +I F R +++ +W
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 109
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 106
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 174 VNSIFRYLTTKCLSELRQQEE 194
V +F T L R +++
Sbjct: 167 VREVFEMATRAALQARRGKKK 187
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 49 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF+ + + S + + E + ++WDTAGQE F A+ YYRG+ A +I +
Sbjct: 28 DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDI 87
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
++F +W ++ ++ I + NK DL D V +A + ++ + T
Sbjct: 88 TKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 147
Query: 167 SVKEDINVNSIF 178
S K IN+N +F
Sbjct: 148 SAKNAININELF 159
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+ E + ++WDTAGQE F A+ YYRG+ A +I + ++F +W
Sbjct: 50 QNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 99
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 106
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 174 VNSIFRYLTTKCLSELRQQEE 194
V +F T L R +++
Sbjct: 167 VREVFEMATRAALQARRGKKK 187
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 49 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAG E+F + YY AQ +I F
Sbjct: 31 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTS 90
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 91 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 148
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 149 SNYNFEKPFLWLARKLIGD 167
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAG E+F + YY AQ +I F R +++ +W
Sbjct: 55 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 100
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAG E+F + YY AQ +I F
Sbjct: 37 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTS 96
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 97 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 154
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 155 SNYNFEKPFLWLARKLIGD 173
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAG E+F + YY AQ +I F R +++ +W
Sbjct: 61 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 106
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
FE + + V + + ++ +WDTAG E+F + YY AQ +I F
Sbjct: 35 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
R +++ +W + C IP VL NK+D+ D+ V A ++ + R + S K
Sbjct: 95 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ N F +L K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAG E+F + YY AQ +I F R +++ +W
Sbjct: 59 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Query: 42 FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101
S R+ F + V + +G+ ++ +WDTAG E + AIT AYYRGA
Sbjct: 46 LSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105
Query: 102 VITFSTIDRDSFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG 160
++ + ++E W ++ + I +LV NK DL V +EA + G
Sbjct: 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNG 165
Query: 161 CRLMRTSVKEDINVNSIFRYLTTKC 185
+ TS + NV + F+ + T+
Sbjct: 166 LSFIETSALDSTNVEAAFQTILTEI 190
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++ +WDTAG E + AIT AYYRGA ++ + ++E W
Sbjct: 73 VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 123
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK-----MKVENECG 128
V + +WDTAGQE F ++ A+YRGA CV+ F ++F+ SW+ +
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
P V++ NKIDL ++ V TS KE INV F+ + L +
Sbjct: 117 NFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECE 70
V + +WDTAGQE F ++ A+YRGA CV+ F ++F+ SW+ + I+ + ++ E
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 71 G 71
Sbjct: 117 N 117
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 53 AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
A S++ KV + +GEEV++ + DTAGQE++ AI Y+R + + FS + +S
Sbjct: 52 ADSYRKKVVL-------DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES 104
Query: 113 FEAAHSWKMKV--ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170
F A ++ ++ E +P +LV NK DL D+ V+ EEA + + TS K
Sbjct: 105 FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 164
Query: 171 DINVNSIF 178
NV+ +F
Sbjct: 165 RANVDKVF 172
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GEEV++ + DTAGQE++ AI Y+R + + FS + +SF A ++ ++
Sbjct: 60 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 115
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 53 AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
A S++ KV + +GEEV++ + DTAGQE++ AI Y+R + + FS + +S
Sbjct: 40 ADSYRKKVVL-------DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES 92
Query: 113 FEAAHSWKMKV--ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170
F A ++ ++ E +P +LV NK DL D+ V+ EEA + + TS K
Sbjct: 93 FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 152
Query: 171 DINVNSIF 178
NV+ +F
Sbjct: 153 RANVDKVF 160
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GEEV++ + DTAGQE++ AI Y+R + + FS + +SF A ++ ++
Sbjct: 48 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 103
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 53 AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
A S++ KV + +GEEV++ + DTAGQE++ AI Y+R + + FS + +S
Sbjct: 48 ADSYRKKVVL-------DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES 100
Query: 113 FEAAHSWKMKV--ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170
F A ++ ++ E +P +LV NK DL D+ V+ EEA + + TS K
Sbjct: 101 FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 160
Query: 171 DINVNSIF 178
NV+ +F
Sbjct: 161 RANVDKVF 168
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GEEV++ + DTAGQE++ AI Y+R + + FS + +SF A ++ ++
Sbjct: 56 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 111
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK-----MKVENECG 128
V + +WDTAGQE F ++ A+YRGA CV+ F ++F+ SW+ +
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
P V++ NKIDL ++ V TS KE INV F+ + L +
Sbjct: 117 NFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECE 70
V + +WDTAGQE F ++ A+YRGA CV+ F ++F+ SW+ + I+ + ++ E
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 71 G 71
Sbjct: 117 N 117
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 51 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 110
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 111 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 170
Query: 174 VNSIFRYLTTKCL 186
V +F T L
Sbjct: 171 VREVFEMATRAAL 183
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 53 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 97
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH-SWKMKVENECG 128
+G V L LWDTAGQE+++ + YRGA ++ FS I + S+E H W ++++
Sbjct: 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAP 109
Query: 129 EIPTVLVQNKIDLLDQ----------SVVAPEEADLLSRALGC-RLMRTSVKEDINVNSI 177
IP VLV K+DL D + + + + L + +G R + S K NV ++
Sbjct: 110 GIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAV 169
Query: 178 F 178
F
Sbjct: 170 F 170
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH 54
N + +G V L LWDTAGQE+++ + YRGA ++ FS I + S+E H
Sbjct: 46 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIH 97
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 49 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 108
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 109 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 168
Query: 174 VNSIFRYLTTKCL 186
V +F T L
Sbjct: 169 VREVFEMATRAAL 181
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 51 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 48 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 107
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 108 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 167
Query: 174 VNSIFRYLTTKCL 186
V +F T L
Sbjct: 168 VREVFEMATRAAL 180
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 50 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
RTI E E ++++ +WDTAG E + AIT AYYRGA +I + S+E + W ++
Sbjct: 50 RTI-EVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTEL 108
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
EN + L+ NK DL V +EA + TS NV+ FR L
Sbjct: 109 RENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELI 168
Query: 183 TKCLSELRQQEEEYS 197
+ + + + S
Sbjct: 169 VAIFQMVSKHQVDLS 183
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
E ++++ +WDTAG E + AIT AYYRGA +I + S+E + W
Sbjct: 54 VENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW 104
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 45 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 104
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 105 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 164
Query: 174 VNSIFRYLTTKCL 186
V +F T L
Sbjct: 165 VREVFEMATRAAL 177
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 47 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 91
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 106
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 174 VNSIFRYLTTKCL 186
V +F T L
Sbjct: 167 VREVFEMATRAAL 179
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 49 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 45 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 104
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 105 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 164
Query: 174 VNSIFRYLTTKCL 186
V +F T L
Sbjct: 165 VREVFEMATRAAL 177
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 47 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 91
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 48 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 107
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 108 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 167
Query: 174 VNSIFRYLTTKCL 186
V +F T L
Sbjct: 168 VREVFEMATRAAL 180
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 50 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
+ +G+ ++ +WDTAG E + AIT AYYRGA ++ + ++E W ++ +
Sbjct: 48 QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 107
Query: 128 -GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
I LV NK DL V +EA + G + TS + NV + F+ + T+
Sbjct: 108 DSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++ +WDTAG E + AIT AYYRGA ++ + ++E W
Sbjct: 49 VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 99
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 53 AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
A S++ KV + +GEEV++ + DTAGQE++ AI Y+R + + FS + +S
Sbjct: 38 ADSYRKKVVL-------DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES 90
Query: 113 FEAAHSWKMKV--ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170
F A ++ ++ E +P +LV NK DL D+ V+ EEA + + TS K
Sbjct: 91 FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKT 150
Query: 171 DINVNSIF 178
NV+ +F
Sbjct: 151 RANVDKVF 158
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKR 64
+ +GEEV++ + DTAGQE++ AI Y+R + + FS + +SF A ++ ++
Sbjct: 46 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---- 101
Query: 65 TIKECEGEEVRLML 78
++ E E V +L
Sbjct: 102 -LRVKEDENVPFLL 114
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
+ +G+ ++ +WDTAG E + AIT AYYRGA ++ + ++E W ++ +
Sbjct: 54 QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 113
Query: 128 -GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
I LV NK DL V +EA + G + TS + NV + F+ + T+
Sbjct: 114 DSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++ +WDTAG E + AIT AYYRGA ++ + ++E W
Sbjct: 55 VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 105
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
+ +G+ ++ +WDTAGQE + IT AYYRGA ++ + ++E W ++ +
Sbjct: 48 QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 107
Query: 128 -GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186
I +LV NK DL V +EA + + TS + NV F+ + T+
Sbjct: 108 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 167
Query: 187 SELRQQE 193
+ Q++
Sbjct: 168 RIVSQKQ 174
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++ +WDTAGQE + IT AYYRGA ++ + ++E W
Sbjct: 49 VDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERW 99
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK-----MKVENECG 128
V + +WDTAGQE F ++ A+YRGA CV+ F ++F+ SW+ +
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
P V++ NKID ++ V TS KE INV F+ + L +
Sbjct: 117 NFPFVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECE 70
V + +WDTAGQE F ++ A+YRGA CV+ F ++F+ SW+ + I+ + ++ E
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 71 G 71
Sbjct: 117 N 117
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 9/179 (5%)
Query: 20 GQEEFDAITKAYYRGAQACVIT--FSTIDRDSFEAAHSWKMKVSIK---RTIKECEGEEV 74
G E+++ + K G T S R+ F +H + + ++ RT+ V
Sbjct: 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEF--SHDSRTTIGVEFSTRTVM-LGTAAV 74
Query: 75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC-GEIPTV 133
+ +WDTAG E + AIT AYYRGA ++ F ++ W ++ + I +
Sbjct: 75 KAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM 134
Query: 134 LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ 192
LV NK DL V EEA + + G + TS + NV F + + +++ +Q
Sbjct: 135 LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAG E + AIT AYYRGA ++ F ++ W
Sbjct: 74 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERW 119
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC-GEIPT 132
V+ +WDTAG E + AIT AYYRGA ++ F ++ W ++ + I
Sbjct: 59 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 118
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ 192
+LV NK DL V EEA + + G + TS + NV F + + +++ +Q
Sbjct: 119 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAG E + AIT AYYRGA ++ F ++ W
Sbjct: 59 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERW 104
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Query: 63 KRTIKECEGE--------EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 114
KR + +G +V L LWDTAGQE F ++T A++R A ++ F + SF
Sbjct: 65 KRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFL 124
Query: 115 AAHSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
+W +++ C VL+ NK DL DQ V +A L+ G TS
Sbjct: 125 NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ 184
Query: 173 NVNSIFRYLTTKCLSELRQQEEEYSI 198
NV L + + Q E+ I
Sbjct: 185 NVEKAVETLLDLIMKRMEQCVEKTQI 210
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKEC 69
+V L LWDTAGQE F ++T A++R A ++ F + SF +W ++ C
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYC 139
Query: 70 EGEEVRLM 77
E ++ L+
Sbjct: 140 ENPDIVLI 147
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF+ + + S + + E + ++WDTAG E F A+ YYRG+ A +I +
Sbjct: 29 DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDI 88
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
++F +W ++ ++ I + NK DL D V +A + ++ + T
Sbjct: 89 TKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 148
Query: 167 SVKEDINVNSIF 178
S K IN+N +F
Sbjct: 149 SAKNAININELF 160
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+ E + ++WDTAG E F A+ YYRG+ A +I + ++F +W
Sbjct: 51 QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 100
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW----KMKVENE 126
G+ + L LWDTAG E F ++T A++R A ++ F + SF +W +M +E
Sbjct: 67 GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 127 CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN 175
+I VL NK DL DQ V EEA L+ G TS N++
Sbjct: 127 NPDI--VLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNIS 173
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+ G+ + L LWDTAG E F ++T A++R A ++ F + SF +W
Sbjct: 64 VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNW 115
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV--EN 125
E + ++ L + DTAG E+F A+ Y + Q + +S + +F + ++
Sbjct: 45 EVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNSIF 178
+ ++P +LV NK DL D+ VV E+ L+R C + +S K INVN IF
Sbjct: 105 DTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ ++ L + DTAG E+F A+ Y + Q + +S + +F + ++
Sbjct: 47 DAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI 100
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV--EN 125
E + ++ L + DTAG E+F A+ Y + Q + +S + +F + ++
Sbjct: 47 EVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 106
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNSIF 178
+ ++P +LV NK DL D+ VV E+ L+R C + +S K INVN IF
Sbjct: 107 DTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ ++ L + DTAG E+F A+ Y + Q + +S + +F + ++
Sbjct: 49 DAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI 102
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK-----MKVENECG 128
V + +WDTAG E F ++ A+YRGA CV+ F ++F+ SW+ +
Sbjct: 57 VTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
P V++ NKIDL ++ V TS KE INV F+ + L +
Sbjct: 117 NFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECE 70
V + +WDTAG E F ++ A+YRGA CV+ F ++F+ SW+ + I+ + ++ E
Sbjct: 57 VTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 71 G 71
Sbjct: 117 N 117
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 53 AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
A S++ KV + +GEEV++ + DTAG E++ AI Y+R + + FS + +S
Sbjct: 40 ADSYRKKVVL-------DGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMES 92
Query: 113 FEAAHSWKMKV--ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170
F A ++ ++ E +P +LV NK DL D+ V+ EEA + + TS K
Sbjct: 93 FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 152
Query: 171 DINVNSIF 178
NV+ +F
Sbjct: 153 RANVDKVF 160
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GEEV++ + DTAG E++ AI Y+R + + FS + +SF A ++ ++
Sbjct: 48 VLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 103
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAG E++D + Y ++ FS DS E W +V++
Sbjct: 50 EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 109
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V PEE D+ +R M S K
Sbjct: 110 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 169
Query: 174 VNSIFRYLTTKCL 186
V +F T L
Sbjct: 170 VREVFEMATRAAL 182
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAG E++D + Y ++ FS DS E
Sbjct: 52 DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 96
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 18/167 (10%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G +I FS +D F A + + + I E +G++V L LWDTAGQE++D
Sbjct: 17 GKTCLLIVFS---KDQFPAVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRARPL 72
Query: 94 YYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGEIPTVLVQNKIDL----------- 141
Y ++ FS DS E W +V++ C +P +LV NK DL
Sbjct: 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELA 132
Query: 142 -LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186
+ Q V P E D+ +R M S K V +F T L
Sbjct: 133 KMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D Y ++ FS DS E
Sbjct: 49 DGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLE 93
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 48 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS 107
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + D L+R+ G + TS K V+ F L +
Sbjct: 108 EDVPMVLVGNKSDLPSRTVDTKQAQD-LARSYGIPFIETSAKTRQGVDDAFYTL----VR 162
Query: 188 ELRQQEEE 195
E+R+ +E+
Sbjct: 163 EIRKHKEK 170
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKR 64
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ + IKR
Sbjct: 46 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQ--IKR 103
Query: 65 TIKECE 70
+K+ E
Sbjct: 104 -VKDSE 108
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-- 129
+E L L DTAGQ+E+ + ++ G V+ +S SF+ S K+ G+
Sbjct: 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR 129
Query: 130 IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189
+P VLV NK DL + V E L+ + G M +S +E+ IF TK + E+
Sbjct: 130 VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF----TKVIQEI 185
Query: 190 RQQEEEYS 197
+ E Y
Sbjct: 186 ARVENSYG 193
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+E L L DTAGQ+E+ + ++ G V+ +S SF+ S K+
Sbjct: 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL 121
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 48 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS 107
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + D L+R+ G + TS K V+ F L +
Sbjct: 108 EDVPMVLVGNKCDLPSRTVDTKQAQD-LARSYGIPFIETSAKTRQGVDDAFYTL----VR 162
Query: 188 ELRQQEE 194
E+R+ +E
Sbjct: 163 EIRKHKE 169
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 46 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI 101
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 48 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS 107
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + D L+R+ G + TS K V+ F L +
Sbjct: 108 EDVPMVLVGNKSDLPSRTVDTKQAQD-LARSYGIPFIETSAKTRQGVDDAFYTL----VR 162
Query: 188 ELRQQEEE 195
E+R+ +E+
Sbjct: 163 EIRKHKEK 170
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKR 64
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ + IKR
Sbjct: 46 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQ--IKR 103
Query: 65 TIKECE 70
+K+ E
Sbjct: 104 -VKDSE 108
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 48 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS 107
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + D L+R+ G + TS K V+ F L +
Sbjct: 108 EDVPMVLVGNKSDLPSRTVDTKQAQD-LARSYGIPFIETSAKTRQGVDDAFYTL----VR 162
Query: 188 ELRQQEEE 195
E+R+ +E+
Sbjct: 163 EIRKHKEK 170
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKR 64
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ + IKR
Sbjct: 46 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQ--IKR 103
Query: 65 TIKECE 70
+K+ E
Sbjct: 104 -VKDSE 108
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
+G+ V L LWDTAGQE++ + YRGA V+ FS I + S+E W ++
Sbjct: 53 DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP 112
Query: 129 EIPTVLVQNKIDLLDQ--------SVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFR 179
+P VLV K+DL D +V+ + + L + +G + S K NV ++F
Sbjct: 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFD 172
Query: 180 YLTTKCLSELRQQE 193
L R++E
Sbjct: 173 TAIKVVLQPPRRKE 186
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N +G+ V L LWDTAGQE++ + YRGA V+ FS I + S+E
Sbjct: 49 NVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYE 97
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
+G V L LWDTAGQE+++ + YRGA ++ FS I + S+E A W ++ +
Sbjct: 50 DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP 109
Query: 129 EIPTVLVQNKIDLLD 143
+P +LV K+DL D
Sbjct: 110 GVPIILVGTKLDLRD 124
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSW 56
N + +G V L LWDTAGQE+++ + YRGA ++ FS I + S+E A W
Sbjct: 46 NVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 100
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 68 ECEGEEVRLMLWDTAGQEEF-DAITKAYYRGAQACVITFSTIDRDSFEAAHSW--KMKVE 124
+ +GE +++ LWDTAGQE F ++ + YYR A V + + SF + +W + K
Sbjct: 63 DIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH 122
Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK---EDINVNSIFRYL 181
+IP +LV NK DL V + A + L TS K ++ +V +IF L
Sbjct: 123 LLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182
Query: 182 TTKCLSE 188
K S
Sbjct: 183 AHKLKSH 189
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 7 EGEEVRLMLWDTAGQEEF-DAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+GE +++ LWDTAGQE F ++ + YYR A V + + SF + +W
Sbjct: 65 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAW 115
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 58 MKVSIKRTIKECEGEEVRLMLWDTAGQEEF-DAITKAYYRGAQACVITFSTIDRDSFEAA 116
+ V + + +GE +++ LWDTAGQE F ++ + YYR A V + + SF +
Sbjct: 62 IGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSL 121
Query: 117 HSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK---ED 171
+W + K +IP +LV NK DL V + A + L TS K ++
Sbjct: 122 PAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDN 181
Query: 172 INVNSIFRYLTTKCLSE 188
+V +IF L K S
Sbjct: 182 DHVEAIFXTLAHKLKSH 198
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 7 EGEEVRLMLWDTAGQEEF-DAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+GE +++ LWDTAGQE F ++ + YYR A V + + SF + +W
Sbjct: 74 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAW 124
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV--EN 125
E + ++ L + DTAG E+F A+ Y + Q + +S + +F + ++
Sbjct: 45 EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDINVNSIF 178
+ ++P +LV NK DL D+ VV E+ L+R C + +S K INVN IF
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV--EN 125
E + ++ L + DTAG E+F A+ Y + Q + +S + +F + ++
Sbjct: 45 EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDINVNSIF 178
+ ++P +LV NK DL D+ VV E+ L+R C + +S K INVN IF
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 63 KRTIKECEGEE--------VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 114
KR + + +G + V L LWDTAG E F ++T A++R A ++ F + SF
Sbjct: 51 KRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFL 110
Query: 115 AAHSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
+W +++ C VL+ NK DL DQ V +A L+ G TS
Sbjct: 111 NVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQ 170
Query: 173 NV 174
NV
Sbjct: 171 NV 172
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKEC 69
+V L LWDTAG E F ++T A++R A ++ F + SF +W ++ C
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQAN---AYC 125
Query: 70 EGEEVRLM 77
E ++ L+
Sbjct: 126 ENPDIVLI 133
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 63 KRTIKECEGEE--------VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 114
KR + + +G + V L LWDTAG E F ++T A++R A ++ F + SF
Sbjct: 51 KRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFL 110
Query: 115 AAHSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
+W +++ C VL+ NK DL DQ V +A L+ G TS
Sbjct: 111 NVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQ 170
Query: 173 NV 174
NV
Sbjct: 171 NV 172
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKEC 69
+V L LWDTAG E F ++T A++R A ++ F + SF +W ++ C
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQAN---AYC 125
Query: 70 EGEEVRLM 77
E ++ L+
Sbjct: 126 ENPDIVLI 133
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAGRTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQE 193
E+RQ +
Sbjct: 162 EIRQHK 167
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 65 DGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS 124
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + D L+R+ G + TS K V+ F L +
Sbjct: 125 EDVPMVLVGNKCDLPSRTVDTKQAQD-LARSYGIPFIETSAKTRQGVDDAFYTL----VR 179
Query: 188 ELRQQEEE 195
E+R+ +E+
Sbjct: 180 EIRKHKEK 187
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKR 64
+ +GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ + IKR
Sbjct: 63 VIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQ--IKR 120
Query: 65 TIKECE 70
+K+ E
Sbjct: 121 -VKDSE 125
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE 129
+GE L LWDTAGQE F +I K+Y+R A ++ + SF W +E+ E
Sbjct: 73 DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE 132
Query: 130 -IPTVLVQNKIDLLD------QSVVAPEEADLLSRALGCRLMRTSVKEDINV 174
+P +LV NK D+ D Q V + L+ G TS K+ N+
Sbjct: 133 TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 1 MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
M I +GE L LWDTAGQE F +I K+Y+R A ++ + SF W
Sbjct: 67 MKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW 122
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 63 KRTIKECEGEE--------VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 114
KR + + +G + V L LWDTAG E F ++T A++R A ++ F + SF
Sbjct: 51 KRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFL 110
Query: 115 AAHSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
+W +++ C VL+ NK DL DQ V +A L+ G TS
Sbjct: 111 NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQ 170
Query: 173 NV 174
NV
Sbjct: 171 NV 172
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKEC 69
+V L LWDTAG E F ++T A++R A ++ F + SF +W ++ C
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYC 125
Query: 70 EGEEVRLM 77
E ++ L+
Sbjct: 126 ENPDIVLI 133
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 54 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 113
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 114 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 168
Query: 188 ELRQQ 192
E+RQ
Sbjct: 169 EIRQH 173
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 52 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 107
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT 132
E++ +WDTAG E+F + YY AQ +I F R +++ +W + C IP
Sbjct: 52 EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 111
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
VL NK+D+ ++ V A + R + S K + N F +L K
Sbjct: 112 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK 161
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
E++ +WDTAG E+F + YY AQ +I F R +++ +W
Sbjct: 52 EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW 98
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT 132
E++ +WDTAG E+F + YY AQ +I F R +++ +W + C IP
Sbjct: 53 EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 112
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
VL NK+D+ ++ V A + R + S K + N F +L K
Sbjct: 113 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK 162
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
E++ +WDTAG E+F + YY AQ +I F R +++ +W
Sbjct: 53 EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW 99
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQE 193
E+RQ +
Sbjct: 162 EIRQHK 167
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
G V L LWDTAGQE+++ + YRGA ++ FS I + S+E + W ++++
Sbjct: 52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP 111
Query: 129 EIPTVLVQNKIDLLD 143
+P VLV K+DL D
Sbjct: 112 GVPIVLVGTKLDLRD 126
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + G V L LWDTAGQE+++ + YRGA ++ FS I + S+E
Sbjct: 48 NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 96
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 53 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 112
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 113 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 167
Query: 188 ELRQQ 192
E+RQ
Sbjct: 168 EIRQH 172
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 51 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 106
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQE 193
E+RQ +
Sbjct: 162 EIRQHK 167
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQE 193
E+RQ +
Sbjct: 162 EIRQHK 167
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 52 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 111
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 112 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 166
Query: 188 ELRQQ 192
E+RQ
Sbjct: 167 EIRQH 171
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 50 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 105
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 52 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 111
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 112 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 166
Query: 188 ELRQQ 192
E+RQ
Sbjct: 167 EIRQH 171
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 50 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 105
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 63 KRTIKECEGEE--------VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 114
KR + + +G + V L LWDTAG E F ++T A++R A ++ F + SF
Sbjct: 51 KRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFL 110
Query: 115 AAHSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
+W +++ C VL+ NK DL DQ V +A L+ G TS
Sbjct: 111 NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQ 170
Query: 173 NV 174
NV
Sbjct: 171 NV 172
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+V L LWDTAG E F ++T A++R A ++ F + SF +W
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW 115
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKSDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKSDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT 132
E++ +WDTAG E+F + YY AQ +I F R +++ +W + C IP
Sbjct: 60 EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 119
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
VL NK+D+ ++ V A + R + S K + N F +L K
Sbjct: 120 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK 169
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
E++ +WDTAG E+F + YY AQ +I F R +++ +W
Sbjct: 60 EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW 106
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
F+ + + V I G+ V+L +WDTAGQE F ++T++YYRGA ++ +
Sbjct: 35 FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 94
Query: 110 RDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168
R+++ A +W + I +L NK DL V EA ++ + TS
Sbjct: 95 RETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 154
Query: 169 KEDINVNSIFRYLTTKCLSELRQQE 193
NV F K L+++ E
Sbjct: 155 LTGENVEEAFVQCARKILNKIESGE 179
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+ V+L +WDTAGQE F ++T++YYRGA ++ + R+++ A +W
Sbjct: 56 GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 104
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E RQ
Sbjct: 162 EFRQH 166
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 47 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE 91
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 47 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE 91
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 51 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 110
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 111 NTPIILVGTKLDLRD 125
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 47 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE 95
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 49 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 108
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 109 NTPIILVGTKLDLRD 123
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 45 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE 93
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 47 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV N+ DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNRCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 47 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 126
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V EE D+ +R + S K
Sbjct: 127 CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 186
Query: 174 VNSIFRYLTTKCL 186
V +F T L
Sbjct: 187 VREVFEMATRAGL 199
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 47 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 47 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DT GQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DT GQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 74 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 133
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 134 NTPIILVGTKLDLRD 148
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 70 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 118
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 47 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 47 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 74 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 133
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 134 NTPIILVGTKLDLRD 148
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 70 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 118
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
+ F+ + + V + G+ V+L +WDTAGQE F ++T++YYRGA ++ +
Sbjct: 48 NKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDI 107
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
R+++ + +W I +L NK DL + V EA ++ + T
Sbjct: 108 TSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 167
Query: 167 SVKEDINVNSIF 178
S NV F
Sbjct: 168 SALTGENVEEAF 179
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+ V+L +WDTAGQE F ++T++YYRGA ++ + R+++ + +W
Sbjct: 71 GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAW 119
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 54 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 113
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 114 NTPIILVGTKLDLRD 128
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 50 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 98
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 66 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 125
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 126 NTPIILVGTKLDLRD 140
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 62 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 110
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 106
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
C +P +LV NK DL + Q V EE D+ +R + S K
Sbjct: 107 CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 166
Query: 174 VNSIFRYLT 182
V +F T
Sbjct: 167 VREVFEMAT 175
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 49 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 57 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 116
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 117 NTPIILVGTKLDLRD 131
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 53 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 101
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF 126
Query: 127 CGEIPTVLVQNKIDL 141
C +P +LV NK DL
Sbjct: 127 CPNVPIILVANKKDL 141
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLE 113
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 69 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA---HSWKMKVEN 125
+G RL + DTAGQEEF A+ + Y R ++ F+ DR SF + ++V++
Sbjct: 52 VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 111
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
+ P VLV NK DL Q V EA + S K +NV+ F L +
Sbjct: 112 R-DDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL-VRA 169
Query: 186 LSELRQQEEEYSINGNGLPP 205
+ + ++QE LPP
Sbjct: 170 VRKYQEQE---------LPP 180
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 4 RIC--EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF 50
+IC +G RL + DTAGQEEF A+ + Y R ++ F+ DR SF
Sbjct: 48 KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSF 96
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 48 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 107
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 108 HTPILLVGTKLDLRD 122
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 44 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 92
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAG+EE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAG+EE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 47 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 107 HTPILLVGTKLDLRD 121
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DT GQEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DT GQEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +V + C
Sbjct: 48 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 107
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 108 HTPILLVGTKLDLRD 122
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAGQE++D + Y +I FS + SFE
Sbjct: 44 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 92
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTA QEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKXDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQE 193
E+RQ +
Sbjct: 162 EIRQHK 167
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTA QEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTA QEE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKXDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTA QEE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 20 GQEEFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVR 75
G E +D + K G ++C++ F+ + + V I G+ V+
Sbjct: 4 GSETYDFLFKFLVIGNAGTGKSCLL--HQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 61
Query: 76 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVL 134
L +WDTAGQE F ++T++YYRGA ++ + R+++ A +W + I +L
Sbjct: 62 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 121
Query: 135 VQNKIDL 141
NK DL
Sbjct: 122 CGNKKDL 128
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+ V+L +WDTAGQE F ++T++YYRGA ++ + R+++ A +W
Sbjct: 57 GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 105
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 52 DGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 111
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 112 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 166
Query: 188 ELRQQ 192
E+RQ
Sbjct: 167 EIRQH 171
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 50 VIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 105
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 69 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG 128
G+E L L DTAGQ+E+ + Y ++ +S SFE K+ + G
Sbjct: 49 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108
Query: 129 --EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
+IP +LV NK DL + V++ EE L+ + + +S KE+ +FR
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 69 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG 128
G+E L L DTAGQ+E+ + Y ++ +S SFE K+ + G
Sbjct: 44 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 103
Query: 129 --EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
+IP +LV NK DL + V++ EE L+ + + +S KE+ +FR
Sbjct: 104 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 156
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ +++ +
Sbjct: 47 DGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++V + + D L+R+ G + TS K V F L +
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
E+RQ
Sbjct: 162 EIRQH 166
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAG EE+ A+ Y R + + F+ + SFE H ++ ++
Sbjct: 45 VIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 69 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG 128
G+E L L DTAGQ+E+ + Y ++ +S SFE K+ + G
Sbjct: 49 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108
Query: 129 --EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
+IP +LV NK DL + V++ EE L+ + + +S KE+ +FR
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 69 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG 128
G+E L L DTAGQ+E+ + Y ++ +S SFE K+ + G
Sbjct: 47 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 106
Query: 129 --EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
+IP +LV NK DL + V++ EE L+ + + +S KE+ +FR
Sbjct: 107 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 159
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAG E++D + Y +I FS + SFE + W +V + C
Sbjct: 47 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAG E++D + Y +I FS + SFE
Sbjct: 43 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAG E++D + Y +I FS + SFE + W +V + C
Sbjct: 47 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAG E++D + Y +I FS + SFE
Sbjct: 43 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAG E++D + Y +I FS + SFE + W +V + C
Sbjct: 50 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 109
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 110 NTPIILVGTKLDLRD 124
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAG E++D + Y +I FS + SFE
Sbjct: 46 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFE 94
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 55 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 114
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 115 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 156
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 55 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 98
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 51 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 110
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 111 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 152
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 51 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 94
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 50 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 109
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 110 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 151
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 50 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 93
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 49 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 108
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 109 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 150
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 49 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 92
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAG E++D + Y +I FS + SFE + W +V + C
Sbjct: 74 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 133
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 134 NTPIILVGTKLDLRD 148
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAG E++D + Y +I FS + SFE
Sbjct: 70 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFE 118
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 51 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 110
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 111 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 152
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 51 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 94
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 55 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 114
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 115 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 156
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 55 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 98
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 58 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 117
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 118 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 159
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 58 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 101
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+ EE L LWDTAGQEE+D + Y + ++ F+ +R SF+ + W+ ++++
Sbjct: 66 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID 125
Query: 129 EIPTVLVQNKIDLLDQSV--VAPEEADLLSRALGC-RLMRTSVKEDINVNSIF 178
TVLV K+DL V +E D L + LGC + S I +N +F
Sbjct: 126 TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+ EE L LWDTAGQEE+D + Y + ++ F+ +R SF+
Sbjct: 66 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 110
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 50 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 109
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 110 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 151
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 50 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 93
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 52 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 111
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 112 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 153
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAGQE++D + Y ++ FS + SFE
Sbjct: 52 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 95
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+ EE L LWDTAGQEE+D + Y + ++ F+ +R SF+ + W+ ++++
Sbjct: 67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID 126
Query: 129 EIPTVLVQNKIDLLDQSV--VAPEEADLLSRALGC-RLMRTSVKEDINVNSIF 178
TVLV K+DL V +E D L + LGC + S I +N +F
Sbjct: 127 TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+ EE L LWDTAGQEE+D + Y + ++ F+ +R SF+
Sbjct: 67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 111
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA---HSWK 120
R E + + L + DTAGQEEF A+ + Y R +I +S D+ SFE H
Sbjct: 56 RKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 121 MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE-DINVNSIFR 179
++V++ P +LV NK+DL+ V ++ ++ + TS K+ +NV+ F
Sbjct: 116 LRVKDRES-FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 180 YLTTKCLSELRQQ 192
L + +RQQ
Sbjct: 175 DL----VRVIRQQ 183
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 13 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
L + DTAGQEEF A+ + Y R +I +S D+ SFE
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE 106
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT 132
++ +WDTAGQE + +I YYRGA ++ F + ++ + A +W +++ I
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-I 150
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
+LV NKID ++ V E ++ ++TS K N+ +IF L
Sbjct: 151 ILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYML 198
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--KMKVS 61
++ +WDTAGQE + +I YYRGA ++ F + ++ + A +W ++K+S
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS 145
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA---HSWKMKVE 124
E + + L + DTAGQEEF A+ + Y R +I +S D+ SFE H ++V+
Sbjct: 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE-DINVNSIFRYLTT 183
+ P +LV NK+DL+ V ++ ++ + TS K+ +NV+ F L
Sbjct: 120 DRES-FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL-- 176
Query: 184 KCLSELRQQ 192
+ +RQQ
Sbjct: 177 --VRVIRQQ 183
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 13 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
L + DTAGQEEF A+ + Y R +I +S D+ SFE
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE 106
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA---HSWKMKVE 124
E + + L + DTAGQEEF A+ + Y R +I +S D+ SFE H ++V+
Sbjct: 55 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 114
Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE-DINVNSIFRYLTT 183
+ P +LV NK+DL+ V ++ ++ + TS K+ +NV+ F L
Sbjct: 115 DRES-FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL-- 171
Query: 184 KCLSELRQQ 192
+ +RQQ
Sbjct: 172 --VRVIRQQ 178
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 13 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
L + DTAGQEEF A+ + Y R +I +S D+ SFE
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE 101
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA---HSWKMKVE 124
E + + L + DTAGQEEF A+ + Y R +I +S D+ SFE H ++V+
Sbjct: 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE-DINVNSIFRYLTT 183
+ P +LV NK+DL+ V ++ ++ + TS K+ +NV+ F L
Sbjct: 120 DRES-FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL-- 176
Query: 184 KCLSELRQQ 192
+ +RQQ
Sbjct: 177 --VRVIRQQ 183
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 13 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
L + DTAGQEEF A+ + Y R +I +S D+ SFE
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE 106
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 126
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
+P +LV NK DL + Q V EE D+ +R + S K
Sbjct: 127 XPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 186
Query: 174 VNSIFRYLTTKCL 186
V +F T L
Sbjct: 187 VREVFEMATRAGL 199
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 20 GQEEFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVR 75
G E +D + K G ++C++ F+ + + V I G+ V+
Sbjct: 1 GSETYDFLFKFLVIGNAGTGKSCLL--HQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 58
Query: 76 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVL 134
L +WDTAG E F ++T++YYRGA ++ + R+++ A +W + I +L
Sbjct: 59 LQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 118
Query: 135 VQNKIDL 141
NK DL
Sbjct: 119 CGNKKDL 125
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+ V+L +WDTAG E F ++T++YYRGA ++ + R+++ A +W
Sbjct: 54 GKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 102
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+ + V L LWDTAGQE++D + Y +I FS + S+E + W +V + C
Sbjct: 47 DSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 107 STPIILVGTKLDLRD 121
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + + + V L LWDTAGQE++D + Y +I FS + S+E
Sbjct: 43 NVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 91
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+ + V L LWDTAGQE++D + Y +I FS + S+E + W +V + C
Sbjct: 53 DSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP 112
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 113 STPIILVGTKLDLRD 127
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + + + V L LWDTAGQE++D + Y +I FS + S+E
Sbjct: 49 NVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 97
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAG E++D + Y +I FS + SF + W +V + C
Sbjct: 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP 258
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 259 NTPIILVGTKLDLRD 273
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAG E++D + Y +I FS + SF
Sbjct: 195 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAG E++D + Y +I FS + SF + W +V + C
Sbjct: 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP 258
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 259 NTPIILVGTKLDLRD 273
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAG E++D + Y +I FS + SF
Sbjct: 195 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+G+ V L LWDTAG E++D + Y +I FS + SF + W +V + C
Sbjct: 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP 258
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 259 NTPIILVGTKLDLRD 273
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + +G+ V L LWDTAG E++D + Y +I FS + SF
Sbjct: 195 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
+ + V L LWDTAGQE++D + Y +I FS + S+E + W +V + C
Sbjct: 54 DSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP 113
Query: 129 EIPTVLVQNKIDLLD 143
P +LV K+DL D
Sbjct: 114 STPIILVGTKLDLRD 128
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
N + + + V L LWDTAGQE++D + Y +I FS + S+E
Sbjct: 50 NVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 98
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L DTAGQE++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L DTAGQE++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH-SWKMKVENE 126
E +G V L LWDTAGQE++D + Y + +I FS DS E W +V +
Sbjct: 52 EVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHF 111
Query: 127 CGEIPTVLVQNKIDL 141
C +P +LV K+DL
Sbjct: 112 CQGVPIILVGCKVDL 126
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH-SWKMKVSIKRT 65
+G V L LWDTAGQE++D + Y + +I FS DS E W I
Sbjct: 54 DGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKW-----IAEV 108
Query: 66 IKECEGEEVRLM 77
+ C+G + L+
Sbjct: 109 LHFCQGVPIILV 120
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENE 126
+ +G+ V L +WDTAGQ+++D + +Y A ++ F +SF+ + W +V +
Sbjct: 76 QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF 135
Query: 127 CGEIPTVLVQNKIDLL-DQSVV 147
C ++P ++V K DL D+S+V
Sbjct: 136 CKKVPIIVVGCKTDLRKDKSLV 157
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 1 MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
M+N +G+ V L +WDTAGQ+++D + +Y A ++ F +SF+
Sbjct: 72 MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD 122
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAG E++D + Y ++ FS + SFE W ++ + C +
Sbjct: 48 GEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAG E++D + Y ++ FS + SFE
Sbjct: 48 GEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV--EN 125
E + L + DTAG E+F ++ Y + Q ++ +S +++ SF+ + ++
Sbjct: 45 EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK 104
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
++P +LV NK+DL + V+ E L+ GC M TS K V+ +F
Sbjct: 105 RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 13 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
L + DTAG E+F ++ Y + Q ++ +S +++ SF+
Sbjct: 53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQ 91
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
GE L L+DTAG E++D + Y ++ FS + SFE W ++ + C +
Sbjct: 52 GEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 111
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
P +LV +IDL D Q + PE A+ L+R L
Sbjct: 112 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 153
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
GE L L+DTAG E++D + Y ++ FS + SFE
Sbjct: 52 GEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 95
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE---AAHSWK 120
R + C+ L + DT G +F A+ + A ++ +S R S E +
Sbjct: 41 RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQI 100
Query: 121 MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180
+++ + IP +LV NK D V EA+ L+R C M TS K + NV +F+
Sbjct: 101 CEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160
Query: 181 L 181
L
Sbjct: 161 L 161
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
+GE L + DTAGQEE+ A+ Y R + + F+ + SF + ++ +++ +
Sbjct: 65 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS 124
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
++P VLV NK DL ++ V ++A L+++ G + TS K V F L +
Sbjct: 125 DDVPMVLVGNKCDLPTRT-VDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL----VR 179
Query: 188 ELRQ 191
E+RQ
Sbjct: 180 EIRQ 183
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+ +GE L + DTAGQEE+ A+ Y R + + F+ + SF + ++ ++
Sbjct: 63 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQI 118
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE---AAHSWK 120
R + C+ L + DT G +F A+ + A ++ FS + S E +
Sbjct: 46 RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLI 105
Query: 121 MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180
++++ +IP +LV NK D Q V EA +++ C M TS K + NV +F+
Sbjct: 106 VQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164
Query: 181 LTT 183
L T
Sbjct: 165 LLT 167
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
+G VRL L DTAGQ+EFD + Y ++ FS + SF+ + W ++ C
Sbjct: 64 DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP 123
Query: 129 EIPTVLVQNKIDL 141
+ P +LV + DL
Sbjct: 124 KAPIILVGTQSDL 136
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G VRL L DTAGQ+EFD + Y ++ FS + SF+
Sbjct: 64 DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQ 108
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 20/94 (21%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYY--------------RG-----AQACVITFSTIDR 110
+G+ V L LWDTAGQE++D + Y RG A +I FS +
Sbjct: 49 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSP 108
Query: 111 DSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLD 143
SFE + W +V + C P +LV K+DL D
Sbjct: 109 ASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 142
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 70 EGEEVRLMLWDTAGQEEFDAI--TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--N 125
+GE+ L++ DT E+ D ++ +G A VI +S DR SFE+A ++++ +
Sbjct: 48 DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH 107
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
+ +P +LV NK DL V+ EE + C+ + TS NV +F
Sbjct: 108 QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 52 AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 111
A H++ + + +GEE LM++D Q+ + A VI +S D+
Sbjct: 34 AGHTYDRSIVV-------DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG 86
Query: 112 SFEAAHSWKMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
SFE A ++++ + ++P +LV NK DL+ V+ +E + C+ + TS
Sbjct: 87 SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA 146
Query: 170 EDINVNSIF 178
NV ++F
Sbjct: 147 LHHNVQALF 155
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 52 AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 111
A H++ + + +GEE LM++D Q+ + A VI +S D+
Sbjct: 39 AGHTYDRSIVV-------DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG 91
Query: 112 SFEAAHSWKMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
SFE A ++++ + ++P +LV NK DL+ V+ +E + C+ + TS
Sbjct: 92 SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA 151
Query: 170 EDINVNSIF 178
NV ++F
Sbjct: 152 LHHNVQALF 160
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 52 AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 111
A H++ + + +GEE LM++D Q+ + A VI +S D+
Sbjct: 39 AGHTYDRSIVV-------DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG 91
Query: 112 SFEAAHSWKMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
SFE A ++++ + ++P +LV NK DL+ V+ +E + C+ + TS
Sbjct: 92 SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA 151
Query: 170 EDINVNSIF 178
NV ++F
Sbjct: 152 LHHNVQALF 160
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE 124
T + +G ++ +WDTAGQE+ + YY GA ++ F R + + W + +
Sbjct: 52 TFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ 111
Query: 125 NECG-EIPTVLVQNKIDLLDQSVVA 148
G E P V+ NKID+ ++ ++
Sbjct: 112 AVVGNEAPIVVCANKIDIKNRQKIS 136
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G ++ +WDTAGQE+ + YY GA ++ F R + + W
Sbjct: 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARW 106
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 76 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGEIPTV 133
L +W+ G+ E+ + + A +I +S DR SFE A ++++ + +IP +
Sbjct: 61 LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 134 LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
LV NK DL+ V+ E + C+ + TS NV +F
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
G++ L L+DTAGQE++D + Y +I FS ++ SF+ W +++
Sbjct: 63 GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN 122
Query: 130 IPTVLVQNKIDLLD 143
+P +L+ +IDL D
Sbjct: 123 VPFLLIGTQIDLRD 136
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
G++ L L+DTAGQE++D + Y +I FS ++ SF+
Sbjct: 63 GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ 106
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM---KVENECGEI 130
V L +WD GQ + Y GAQ ++ + + SFE W KV E
Sbjct: 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115
Query: 131 PTV-LVQNKIDLLDQSVVAPEE 151
P V LV NKIDL + PE+
Sbjct: 116 PLVALVGNKIDLEHMRTIKPEK 137
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V L +WD GQ + Y GAQ ++ + + SFE W
Sbjct: 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDW 101
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGEIP 131
+ L +W+ G+ E+ + + A +I +S DR SFE A ++++ + +IP
Sbjct: 59 ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 116
Query: 132 TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
+LV NK DL+ V+ E + C+ + TS NV +F
Sbjct: 117 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKVENE 126
E E + V L LWDT+G +D + Y + A ++ F ++ ++A W+ ++ +
Sbjct: 69 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY 128
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEADLLSRALGCR--LMRTSVKEDI 172
C +L+ K DL Q+ ++ E+ +++ LG L ++ +
Sbjct: 129 CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEK 188
Query: 173 NVNSIFRYLTTKCLSE 188
+++SIFR + CL++
Sbjct: 189 SIHSIFRTASMLCLNK 204
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKV 60
E + V L LWDT+G +D + Y + A ++ F ++ ++A W+ ++
Sbjct: 71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 125
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGEIP 131
+ L +W+ G+ E+ + + A +I +S DR SFE A ++++ + +IP
Sbjct: 90 ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 147
Query: 132 TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
+LV NK DL+ V+ E + C+ + TS NV +F
Sbjct: 148 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAY-YRGAQACVITFSTIDRDSFEAAHS--WKMKVENECG 128
EEV L+++D Q + + + + A +I FS DR SF +++
Sbjct: 70 EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 129
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
++P +LV NK DL V+ EE L+ L C+ + TS N +F
Sbjct: 130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKVENE 126
E E + V L LWDT+G +D + Y + A ++ F ++ ++A W+ ++ +
Sbjct: 52 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY 111
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEADLLSRALGCR--LMRTSVKEDI 172
C +L+ K DL Q+ ++ E+ +++ LG L ++ +
Sbjct: 112 CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEK 171
Query: 173 NVNSIFRYLTTKCLSE 188
+++SIFR + CL++
Sbjct: 172 SIHSIFRTASMLCLNK 187
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKV 60
E + V L LWDT+G +D + Y + A ++ F ++ ++A W+ ++
Sbjct: 54 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 108
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKVENE 126
E E + V L LWDT+G +D + Y + A ++ F ++ ++A W+ ++ +
Sbjct: 53 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY 112
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEADLLSRALGCR--LMRTSVKEDI 172
C +L+ K DL Q+ ++ E+ +++ LG L ++ +
Sbjct: 113 CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEK 172
Query: 173 NVNSIFRYLTTKCLSE 188
+++SIFR + CL++
Sbjct: 173 SIHSIFRTASMLCLNK 188
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKV 60
E + V L LWDT+G +D + Y + A ++ F ++ ++A W+ ++
Sbjct: 55 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 109
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAY-YRGAQACVITFSTIDRDSFEAAHS--WKMKVENECG 128
EEV L+++D Q + + + + A +I FS DR SF +++
Sbjct: 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 108
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
++P +LV NK DL V+ EE L+ L C+ + TS N +F
Sbjct: 109 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAY-YRGAQACVITFSTIDRDSFEAAHS--WKMKVENECG 128
EEV L+++D Q + + + + A +I FS DR SF +++
Sbjct: 59 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 118
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
++P +LV NK DL V+ EE L+ L C+ + TS N +F
Sbjct: 119 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKE- 68
EV+L ++ AG G A V+ F T W+ +++ T +
Sbjct: 28 EVKLAIFGRAGV------------GKSALVVRFLT-------KRFIWEYDPTLESTYRHQ 68
Query: 69 --CEGEEVRLMLWDTAGQEEFDAITK-AYYRGAQACVITFSTIDRDSFEAAHSWKMKVE- 124
+ E V + + DTAGQE D I + + R + V+ + DR SFE K ++
Sbjct: 69 ATIDDEVVSMEILDTAGQE--DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDE 126
Query: 125 -NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV-KEDINVNSIF 178
+ + +LV NK DL V+ EE + L+ L C S + N+ IF
Sbjct: 127 IKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 76 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGEIPTV 133
L +W+ G+ E+ + + A +I +S DR SFE A ++++ + +IP +
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 134 LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
LV NK DL+ V+ E + + + TS NV +F
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 120
+I ++ E + + +WD GQ++ + + YY+ QA + + DRD A
Sbjct: 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREEL 107
Query: 121 MKVENE 126
MK+ NE
Sbjct: 108 MKMLNE 113
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
E + + +WD GQ++ + + YY+ QA + + DRD A MK+
Sbjct: 56 VEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKM 110
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGEIP 131
V + +WD GQ F ++ + Y RG A V DR+ EA+ + + + + IP
Sbjct: 67 VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP 126
Query: 132 TVLVQNKIDL 141
+++ NK DL
Sbjct: 127 VLVLGNKRDL 136
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS 55
V + +WD GQ F ++ + Y RG A V DR+ EA+ +
Sbjct: 67 VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRN 111
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGE 129
+ V+ +WD GQ++ + + YY G Q + DRD + A ++ N E +
Sbjct: 54 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 113
Query: 130 IPTVLVQNKIDLLDQSVVAPEE 151
++ NK DL D + P E
Sbjct: 114 AIILIFANKQDLPD--AMKPHE 133
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ V+ +WD GQ++ + + YY G Q + DRD + A
Sbjct: 54 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA 98
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGE 129
+ V+ +WD GQ++ + + YY G Q + DRD + A ++ N E +
Sbjct: 55 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 130 IPTVLVQNKIDLLDQSVVAPEE 151
++ NK DL D + P E
Sbjct: 115 AIILIFANKQDLPD--AMKPHE 134
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ V+ +WD GQ++ + + YY G Q + DRD + A
Sbjct: 55 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA 99
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGE 129
+ V+ +WD GQ++ + + YY G Q + DRD + A ++ N E +
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 130 IPTVLVQNKIDLLDQSVVAPEE 151
++ NK DL D + P E
Sbjct: 102 AIILIFANKQDLPD--AMKPHE 121
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ V+ +WD GQ++ + + YY G Q + DRD + A
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA 86
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGE 129
+ V+ +WD GQ++ + + YY G Q + DRD + A ++ N E +
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 130 IPTVLVQNKIDLLDQSVVAPEE 151
++ NK DL D + P E
Sbjct: 102 AIILIFANKQDLPD--AMKPHE 121
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ V+ +WD GQ++ + + YY G Q + DRD + A
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA 86
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGE 129
+ V+ +WD GQ++ + + YY G Q + DRD + A ++ N E +
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRD 101
Query: 130 IPTVLVQNKIDLLD 143
++ NK DL D
Sbjct: 102 AIILIFANKQDLPD 115
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ V+ +WD GQ++ + + YY G Q + DRD + A
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA 86
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKVENE 126
E + + + L LWDT+G +D + Y + A +I F ++ ++ WK +++
Sbjct: 65 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF 124
Query: 127 CGEIPTVLVQNKIDL 141
C +LV K DL
Sbjct: 125 CPNTKMLLVGCKSDL 139
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKV 60
+ + + L LWDT+G +D + Y + A +I F ++ ++ WK ++
Sbjct: 67 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 121
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGE 129
+ V+ +WD GQ++ + + YY G Q + DRD + A ++ N E +
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 423
Query: 130 IPTVLVQNKIDLLDQSVVAPEE 151
++ NK DL D + P E
Sbjct: 424 AIILIFANKQDLPD--AMKPHE 443
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ V+ +WD GQ++ + + YY G Q + DRD + A
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA 408
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKVENE 126
E + + + L LWDT+G +D + Y + A +I F ++ ++ WK +++
Sbjct: 70 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF 129
Query: 127 CGEIPTVLVQNKIDL 141
C +LV K DL
Sbjct: 130 CPNTKMLLVGCKSDL 144
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKV 60
+ + L LWDT+G +D + Y + A +I F ++ ++ WK ++
Sbjct: 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 126
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Query: 57 KMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 116
K +IK + E +E WD GQE A + + + ++ +D +
Sbjct: 81 KQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLL---LDSRTDSNK 137
Query: 117 HSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176
H W +E G+ P ++V NKID + ++ + A+ R R S K V S
Sbjct: 138 HYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVES 197
Query: 177 IFRYLTTKCL 186
I + L + L
Sbjct: 198 IAKSLKSAVL 207
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKVENE 126
E + + + L LWDT+G +D + Y + A +I F ++ ++ WK +++
Sbjct: 49 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF 108
Query: 127 CGEIPTVLVQNKIDL 141
C +LV K DL
Sbjct: 109 CPNTKMLLVGCKSDL 123
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKV 60
+ + + L LWDT+G +D + Y + A +I F ++ ++ WK ++
Sbjct: 51 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 105
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGEIP 131
V + LWD GQ F ++ + Y RG A V D++ EA+ + + + + IP
Sbjct: 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 126
Query: 132 TVLVQNKIDL 141
+++ NK DL
Sbjct: 127 VLVLGNKRDL 136
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 2 INRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS 55
+ +I +G V + LWD GQ F ++ + Y RG A V D++ EA+ +
Sbjct: 59 MRKITKGN-VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 111
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN-----ECG 128
V + LWD GQ F ++ + Y RG A V D++ EA+ K ++ N +
Sbjct: 76 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEAS---KNELHNLLDKPQLQ 132
Query: 129 EIPTVLVQNKIDL 141
IP +++ NK DL
Sbjct: 133 GIPVLVLGNKRDL 145
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 2 INRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS 55
+ +I +G V + LWD GQ F ++ + Y RG A V D++ EA+ +
Sbjct: 68 MRKITKGN-VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 120
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--KMKVENECGEIP 131
V L L DTAG + + Y+ G ++ F +SFE+ +W +K E P
Sbjct: 73 VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132
Query: 132 --TVLVQNKIDLLDQ 144
VLV NK DL Q
Sbjct: 133 LRAVLVANKTDLPPQ 147
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V L L DTAG + + Y+ G ++ F +SFE+ +W
Sbjct: 73 VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAW 118
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGE 129
+ V+ +WD G ++ + + YY G Q + DRD + A ++ N E +
Sbjct: 55 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 130 IPTVLVQNKIDLLDQSVVAPEE 151
++ NK DL D + P E
Sbjct: 115 AIILIFANKQDLPD--AMKPHE 134
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ V+ +WD G ++ + + YY G Q + DRD + A
Sbjct: 55 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA 99
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGE 129
+ V+ +WD G ++ + + YY G Q + DRD + A ++ N E +
Sbjct: 44 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 103
Query: 130 IPTVLVQNKIDLLDQSVVAPEE 151
++ NK DL D + P E
Sbjct: 104 AIILIFANKQDLPD--AMKPHE 123
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ V+ +WD G ++ + + YY G Q + DRD + A
Sbjct: 44 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA 88
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGE 129
+ V+ +WD G ++ + + YY G Q + DRD + A ++ N E +
Sbjct: 45 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 104
Query: 130 IPTVLVQNKIDLLDQSVVAPEE 151
++ NK DL D + P E
Sbjct: 105 AIILIFANKQDLPD--AMKPHE 124
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ V+ +WD G ++ + + YY G Q + DRD + A
Sbjct: 45 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA 89
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++ E + + +WD GQ++ + + Y++ Q + + DR+ A
Sbjct: 31 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 90
Query: 119 WKMKVENECGEIPTVLVQNKIDL 141
+M E+E + ++ NK DL
Sbjct: 91 MRMLAEDELRDAVLLVFANKQDL 113
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
E + + +WD GQ++ + + Y++ Q + + DR+ A M++
Sbjct: 39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 93
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++ E + + +WD GQ++ + + Y++ Q + + DR+ A
Sbjct: 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 107
Query: 119 WKMKVENECGEIPTVLVQNKIDL 141
+M E+E + ++ NK DL
Sbjct: 108 MRMLAEDELRDAVLLVFANKQDL 130
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
E + + +WD GQ++ + + Y++ Q + + DR+ A M++
Sbjct: 56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 110
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++ E + + +WD GQ++ + + Y++ Q + + DR+ A
Sbjct: 47 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 106
Query: 119 WKMKVENECGEIPTVLVQNKIDL 141
+M E+E + ++ NK DL
Sbjct: 107 MRMLAEDELRDAVLLVFANKQDL 129
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
E + + +WD GQ++ + + Y++ Q + + DR+ A M++
Sbjct: 55 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 109
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++ E + + +WD GQ++ + + Y++ Q + + DRD A
Sbjct: 51 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 110
Query: 119 WKMKVENECGEIPTVLVQNKIDL 141
+M E+E + ++ NK DL
Sbjct: 111 HRMLNEDELRDAVLLVFANKQDL 133
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 48
E + + +WD GQ++ + + Y++ Q + + DRD
Sbjct: 59 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 101
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++ E + + +WD GQ++ + + Y++ Q + + DR+ A
Sbjct: 196 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 255
Query: 119 WKMKVENECGEIPTVLVQNKIDL 141
+M E+E + ++ NK DL
Sbjct: 256 MRMLAEDELRDAVLLVFANKQDL 278
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
E + + +WD GQ++ + + Y++ Q + + DR+ A M++
Sbjct: 205 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 258
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE--AAHS 118
+I ++ E + + +WD GQ+ + K Y++ Q + + DR+ + A
Sbjct: 48 TIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADEL 107
Query: 119 WKMKVENECGEIPTVLVQNKIDL 141
KM + +E + +L NK DL
Sbjct: 108 QKMLLVDELRDAVLLLFANKQDL 130
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 15 LWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+WD GQ+ + K Y++ Q + + DR+ +
Sbjct: 65 VWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQ 101
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE 124
IK + + +L +WD GQ + ++Y+ + + DR FE ++
Sbjct: 51 NIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELL 110
Query: 125 NECGE--IPTVLVQNKIDLL 142
E +P ++ NK DLL
Sbjct: 111 EEEKLSCVPVLIFANKQDLL 130
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+ + +L +WD GQ + ++Y+ + + DR FE
Sbjct: 56 QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE 124
IK + + +L +WD GQ + ++Y+ + + DR FE ++
Sbjct: 52 NIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELL 111
Query: 125 NECGE--IPTVLVQNKIDLL 142
E +P ++ NK DLL
Sbjct: 112 EEEKLSCVPVLIFANKQDLL 131
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+ + +L +WD GQ + ++Y+ + + DR FE
Sbjct: 57 QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++E R ++WD GQE + YY + ++ + DR+
Sbjct: 47 TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREEL 106
Query: 119 WKMKVENECGEIPTVLVQNKIDLLDQSVVA 148
+KM + + ++ NK D+ + VA
Sbjct: 107 YKMLAHEDLRKAGLLIFANKQDVKECMTVA 136
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 12 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 48
R ++WD GQE + YY + ++ + DR+
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++E R ++WD GQE + YY + ++ + DR+
Sbjct: 47 TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREEL 106
Query: 119 WKMKVENECGEIPTVLVQNKIDLLDQSVVA 148
+KM + + ++ NK D+ + VA
Sbjct: 107 YKMLAHEDLRKAGLLIFANKQDVKECMTVA 136
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 12 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 48
R ++WD GQE + YY + ++ + DR+
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE 124
IK + + +L +WD GQ + ++Y+ + + DR FE ++
Sbjct: 39 NIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELL 98
Query: 125 NECGE--IPTVLVQNKIDLL 142
E +P ++ NK DLL
Sbjct: 99 EEEKLSCVPVLIFANKQDLL 118
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+ + +L +WD GQ + ++Y+ + + DR FE
Sbjct: 44 QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 26/145 (17%)
Query: 1 MINRICEGEEVRLML--WDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
+ NR+ + ++VR+++ D AG+ T Y+ V+T TI F
Sbjct: 8 LFNRLFQKKDVRILMVGLDAAGK------TTILYKVKLGEVVT--TIPTIGF-------- 51
Query: 59 KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS 118
++ E + +WD GQ++ + + YY + + DR+ + A
Sbjct: 52 ------NVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDARE 105
Query: 119 --WKMKVENECGEIPTVLVQNKIDL 141
+M E E + ++ NK DL
Sbjct: 106 ELHRMINEEELKDAIILVFANKQDL 130
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++E R ++WD GQE + YY + ++ + DR+
Sbjct: 52 TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREEL 111
Query: 119 WKMKVENECGEIPTVLVQNKIDLLDQSVVA 148
+KM + + ++ NK D+ + VA
Sbjct: 112 YKMLAHEDLRKAGLLIFANKQDVKECMTVA 141
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 12 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 48
R ++WD GQE + YY + ++ + DR+
Sbjct: 66 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 102
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 33.5 bits (75), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++E R ++WD GQE + YY + ++ + DR+
Sbjct: 53 TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREEL 112
Query: 119 WKMKVENECGEIPTVLVQNKIDLLDQSVVA 148
+KM + + ++ NK D+ + VA
Sbjct: 113 YKMLAHEDLRKAGLLIFANKQDVKECMTVA 142
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 12 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 48
R ++WD GQE + YY + ++ + DR+
Sbjct: 67 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 103
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE--AAHS 118
+I ++ E + + +WD GQ++ + + Y++ Q + + DR+ + A
Sbjct: 60 TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADEL 119
Query: 119 WKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
KM E+E + ++ NK D+ + V+ L+ LG + +R+
Sbjct: 120 QKMLQEDELRDAVLLVFANKQDMPNAMPVSE-----LTDKLGLQHLRS 162
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 15 LWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+WD GQ++ + + Y++ Q + + DR+ +
Sbjct: 77 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQ 113
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE--AAHSWKMKV 123
I++ ++ L +WD AG+EEF + T ++ +A + + + E A W +
Sbjct: 46 IRDKRKRDLVLNVWDFAGREEFYS-THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNI 104
Query: 124 ENECGEIPTVLVQNKIDLLDQ 144
+ P +LV +D+ D+
Sbjct: 105 KARASSSPVILVGTHLDVSDE 125
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE--AAHSWKMKV 123
I++ ++ L +WD AG+EEF + T ++ +A + + + E A W +
Sbjct: 48 IRDKRKRDLVLNVWDFAGREEFYS-THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNI 106
Query: 124 ENECGEIPTVLVQNKIDLLDQ 144
+ P +LV +D+ D+
Sbjct: 107 KARASSSPVILVGTHLDVSDE 127
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++ + + + +WD GQ+ ++ + YYR + + + DR A
Sbjct: 48 TIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVM 107
Query: 119 WKMKVENECGEIPTVLVQNKIDL 141
+M E+E ++ NK DL
Sbjct: 108 QRMLNEDELRNAAWLVFANKQDL 130
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR 47
+ + +WD GQ+ ++ + YYR + + + DR
Sbjct: 59 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 97
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++ + + + +WD GQ+ ++ + YYR + + + DR A
Sbjct: 31 TIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVM 90
Query: 119 WKMKVENECGEIPTVLVQNKIDL 141
+M E+E ++ NK DL
Sbjct: 91 QRMLNEDELRNAAWLVFANKQDL 113
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR 47
+ + +WD GQ+ ++ + YYR + + + DR
Sbjct: 42 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 80
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++ + + + +WD GQ+ ++ + YYR + + + DR A
Sbjct: 48 TIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVM 107
Query: 119 WKMKVENECGEIPTVLVQNKIDL 141
+M E+E ++ NK DL
Sbjct: 108 QRMLNEDELRNAVWLVFANKQDL 130
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR 47
+ + +WD GQ+ ++ + YYR + + + DR
Sbjct: 59 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDR 97
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++E + ++WD GQE + YY + ++ +IDR+
Sbjct: 47 TIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEEL 106
Query: 119 WKMKVENECGEIPTVLVQNKIDL 141
++M + + ++ NK D+
Sbjct: 107 YRMLAHEDLRKAAVLIFANKQDM 129
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 48
+ ++WD GQE + YY + ++ +IDR+
Sbjct: 58 KNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRE 97
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
+I ++ E + + +WD G ++ + + Y++ Q + + DR+ A
Sbjct: 33 TIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 92
Query: 119 WKMKVENECGEIPTVLVQNKIDL 141
+M E+E + ++ NK DL
Sbjct: 93 MRMLAEDELRDAVLLVFANKQDL 115
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
E + + +WD G ++ + + Y++ Q + + DR+ A M++
Sbjct: 41 VEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 95
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 53 AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
A S + +I +I++ + + ++D +GQ + + + YY+ QA + + DR
Sbjct: 46 AQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR 105
Query: 113 FEAAHSWKMKVENECG----EIPTVLVQNKIDLLD 143
A + N IP + NK+DL D
Sbjct: 106 MVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 98 AQACVITFSTIDRDSFEAAHSWKMKVENECGE------IPTVLVQNKIDLLDQSVVAPEE 151
A A + FS D +SF+A ++ + GE + V Q++I VV
Sbjct: 73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV---- 128
Query: 152 ADLLSRALGCRLMRTSVKE-----DINVNSIFRYLTTKCLSELRQQE 193
D +RAL + R S E +NV+ +F+ + K ++ +QQ+
Sbjct: 129 GDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQ 175
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGE 129
+ ++ +WD GQ + YY A + + DRD + S M E E +
Sbjct: 44 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRK 103
Query: 130 IPTVLVQNKIDLLDQSVVAPEEADLLS 156
V+ NK D ++Q++ E A+ L
Sbjct: 104 AILVVFANKQD-MEQAMTPSEMANALG 129
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS 55
+ ++ +WD GQ + YY A + + DRD + S
Sbjct: 44 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 90
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE 124
IK + + +L +WD G + ++Y+ + + DR FE ++
Sbjct: 39 NIKSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELL 98
Query: 125 NECGE--IPTVLVQNKIDLL 142
E +P ++ NK DLL
Sbjct: 99 EEEKLSCVPVLIFANKQDLL 118
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 84 QEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE------IPTVLVQN 137
+EE A + A A + FS D +SF+A ++ + GE + V Q+
Sbjct: 59 REEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 138 KIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE-----DINVNSIFRYLTTKCLSELRQQ 192
+I VV D +RAL + R S E +NV+ +F+ + K ++ +QQ
Sbjct: 119 RISASSPRVV----GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ 174
Query: 193 E 193
+
Sbjct: 175 Q 175
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 128 GEIPTVLVQNKIDLLDQSVVAP---------EEADLLSRA--LGCRLMRTSVKEDINVNS 176
G++ ++ NKI+ LD +++ P E DL ++ LG + ++ ED+N+ +
Sbjct: 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLET 379
Query: 177 IFRYLTTK 184
+ +TTK
Sbjct: 380 L---VTTK 384
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 59 KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 116
K +I ++ + ++L +WD GQ + YY A + + D+D A
Sbjct: 47 KPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA 104
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ ++L +WD GQ + YY A + + D+D A
Sbjct: 60 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA 104
>pdb|3ZQ6|A Chain A, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|B Chain B, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|C Chain C, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|D Chain D, Adp-Alf4 Complex Of M. Therm. Trc40
Length = 324
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 112 SFEAAHSWKMKVENECGEIPTVLVQN----KID-----------LLDQSVVAPEEA-DLL 155
S + AHS +E E G PT + +N +ID L +Q+ + P D+L
Sbjct: 49 STDPAHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQAKLQEQAAMNPGMGLDML 108
Query: 156 SRALGCRLMRTSVKEDINVNSIFRYLTT 183
+ M + E + RY+TT
Sbjct: 109 QDQMDMASMSPGIDEAAAFDQFLRYMTT 136
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMK 122
IK E +L +WD GQ+ + + Y+ + + DR + +
Sbjct: 51 NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 110
Query: 123 VENECGEIPTVLVQNKIDL 141
VE ++ NK DL
Sbjct: 111 VEERLAGATLLIFANKQDL 129
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGE 129
+ ++ +WD G + YY A + + DRD + S M E E +
Sbjct: 46 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRK 105
Query: 130 IPTVLVQNKIDLLDQSVVAPEEADLLS 156
V+ NK D ++Q++ + E A+ L
Sbjct: 106 AILVVFANKQD-MEQAMTSSEMANSLG 131
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMK 122
IK E +L +WD GQ+ + + Y+ + + DR + +
Sbjct: 53 NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 112
Query: 123 VENECGEIPTVLVQNKIDL 141
VE ++ NK DL
Sbjct: 113 VEERLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMK 122
IK E +L +WD GQ+ + + Y+ + + DR + +
Sbjct: 53 NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 112
Query: 123 VENECGEIPTVLVQNKIDL 141
VE ++ NK DL
Sbjct: 113 VEERLAGATLLIFANKQDL 131
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR 110
IK E +L +WD GQ+ + + Y+ + + DR
Sbjct: 53 NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADR 98
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGEIP 131
+ +WD GQ+ ++ + YY + + + DR A +M E+E
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAA 120
Query: 132 TVLVQNKIDL 141
++ NK DL
Sbjct: 121 WLVFANKQDL 130
>pdb|2FJK|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|B Chain B, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|C Chain C, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|D Chain D, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
Length = 305
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 87 FDAITKAYYRGAQACVIT-----FSTIDRDS---FEAAHSWKMKVENECGEIPTVLVQNK 138
++++ KA G + I F T R++ EAAH+ + VE E G + +
Sbjct: 85 YESVLKALREGFTSVXIDKSHEDFETNVRETKRVVEAAHAVGVTVEAELGRLAGIEEHVA 144
Query: 139 IDLLDQSVVAPEEADLLSRALGCRLMRTSV 168
+D D + PEEA + G + ++
Sbjct: 145 VDEKDALLTNPEEARIFXERTGADYLAVAI 174
>pdb|1RV8|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RV8|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RV8|C Chain C, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RV8|D Chain D, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RVG|A Chain A, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
pdb|1RVG|B Chain B, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
pdb|1RVG|C Chain C, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
pdb|1RVG|D Chain D, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
Length = 305
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168
R EAAH+ + VE E G + + +D D + PEEA + G + ++
Sbjct: 116 RRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAI 174
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 78 LWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGEIPTVLV 135
+WD GQ + Y+ A + + DRD A + + E+E + ++
Sbjct: 70 VWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIF 129
Query: 136 QNKIDLLDQS 145
NK DL D +
Sbjct: 130 ANKQDLPDAA 139
>pdb|3BSF|A Chain A, Crystal Structure Of The MtaSAH NUCLEOSIDASE
pdb|3BSF|B Chain B, Crystal Structure Of The MtaSAH NUCLEOSIDASE
Length = 254
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
++PT+L++ D++D + P + L L + K D ++ + +++ KCLS+
Sbjct: 201 KVPTILIKGVTDIVDGN--RPTSEEFLE-----NLAAVTAKLDESLTKVIDFISGKCLSD 253
Query: 189 L 189
L
Sbjct: 254 L 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,847,007
Number of Sequences: 62578
Number of extensions: 204812
Number of successful extensions: 1217
Number of sequences better than 100.0: 352
Number of HSP's better than 100.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 677
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)