BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2518
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ULC3|RAB23_HUMAN Ras-related protein Rab-23 OS=Homo sapiens GN=RAB23 PE=1 SV=1
Length = 237
Score = 176 bits (447), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 98/121 (80%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP 131
E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA SW+ KV E G+IP
Sbjct: 56 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIP 115
Query: 132 TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQ 191
TVLVQNKIDLLD S + EEA+ L++ L R RTSVKED+NVN +F+YL K L +L+Q
Sbjct: 116 TVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQ 175
Query: 192 Q 192
Q
Sbjct: 176 Q 176
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/52 (82%), Positives = 47/52 (90%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA SW+ KV
Sbjct: 56 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKV 107
>sp|P35288|RAB23_MOUSE Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2
Length = 237
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 97/121 (80%)
Query: 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP 131
E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA SW+ KV E G+IP
Sbjct: 56 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP 115
Query: 132 TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQ 191
T LVQNKIDLLD S + EEA+ L++ L R RTSVKED+NV+ +F+YL K L +L+Q
Sbjct: 116 TALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQKLKQ 175
Query: 192 Q 192
Q
Sbjct: 176 Q 176
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/52 (82%), Positives = 47/52 (90%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA SW+ KV
Sbjct: 56 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV 107
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G +I F+ D+F + + + K + EG++++L +WDTAGQE F IT A
Sbjct: 20 GKTCLIIRFA---EDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTA 76
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEA 152
YYRGA ++ + D SFE +W + EN + +L+ NK D+ + V E+A
Sbjct: 77 YYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQA 136
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLPPYT 207
D L+R G R TS K +NV+ F L L + S NGN PP T
Sbjct: 137 DKLAREHGIRFFETSAKSSMNVDEAFSSLARDI---LLKSGGRRSGNGNK-PPST 187
>sp|Q5KTJ6|RAB13_MESAU Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2
SV=1
Length = 203
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G +I F+ D+F + + + K E EG+ ++L +WDTAGQE F IT A
Sbjct: 20 GKTCLIIRFA---EDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTA 76
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEA 152
YYRGA ++ + D SFE +W + EN + +L+ NK D+ + V E+A
Sbjct: 77 YYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQA 136
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186
D L+R G R TS K +NV+ F L L
Sbjct: 137 DKLAREHGIRFFETSAKSSMNVDEAFNSLARDIL 170
>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt2 PE=3 SV=1
Length = 200
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G ++ FS DSF + + + K E +G+ ++L +WDTAGQE F IT A
Sbjct: 21 GKSCLLLRFS---EDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 77
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEA 152
YYRGA ++ + D+ SF+ +W VE E + +L+ NK D DQ V+ E+
Sbjct: 78 YYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQG 137
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGL 203
L+ LG + + S K ++NV+ F L + + E E+S N +
Sbjct: 138 QALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNV 188
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G +I F+ D+F + + + + + EG++++L +WDTAGQE F IT A
Sbjct: 20 GKTCLIIRFA---EDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTA 76
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEA 152
YYRGA ++ + D SFE +W + EN + +L+ NK D+ + V E+A
Sbjct: 77 YYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQA 136
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLPPYT 207
D L+R G R TS K +NV+ F L L + + N PP T
Sbjct: 137 DKLAREHGIRFFETSAKSSMNVDEAFSSLARDIL----LKSGGRRLKNNNKPPST 187
>sp|Q5U316|RAB35_RAT Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1
Length = 201
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
++F ++ + V K E GE+V+L +WDTAGQE F IT YYRG ++ +
Sbjct: 31 NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 90
Query: 108 IDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS 167
+SF W ++ C ++ +LV NK D ++ VV E+A + +G +L TS
Sbjct: 91 TSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 150
Query: 168 VKEDINVNSIFRYLTTKCLSEL 189
KE++NV +F C++EL
Sbjct: 151 AKENVNVEEMF-----NCITEL 167
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
GE+V+L +WDTAGQE F IT YYRG ++ + +SF W
Sbjct: 54 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRW 102
>sp|Q6PHN9|RAB35_MOUSE Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1
Length = 201
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
++F ++ + V K E GE+V+L +WDTAGQE F IT YYRG ++ +
Sbjct: 31 NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 90
Query: 108 IDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS 167
+SF W ++ C ++ +LV NK D ++ VV E+A + +G +L TS
Sbjct: 91 TSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 150
Query: 168 VKEDINVNSIFRYLTTKCLSEL 189
KE++NV +F C++EL
Sbjct: 151 AKENVNVEEMF-----NCITEL 167
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
GE+V+L +WDTAGQE F IT YYRG ++ + +SF W
Sbjct: 54 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRW 102
>sp|Q15286|RAB35_HUMAN Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1
Length = 201
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
++F ++ + V K E GE+V+L +WDTAGQE F IT YYRG ++ +
Sbjct: 31 NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 90
Query: 108 IDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS 167
+SF W ++ C ++ +LV NK D ++ VV E+A + +G +L TS
Sbjct: 91 TSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 150
Query: 168 VKEDINVNSIFRYLTTKCLSEL 189
KE++NV +F C++EL
Sbjct: 151 AKENVNVEEMF-----NCITEL 167
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
GE+V+L +WDTAGQE F IT YYRG ++ + +SF W
Sbjct: 54 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRW 102
>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2
SV=1
Length = 202
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DS+ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA ++T+
Sbjct: 31 DSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVTYDV 90
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D +SF W +++ E + +LV NK DL Q VV+ E A + LG + T
Sbjct: 91 TDLESFNNVKQWLNEIDRYASENVNKLLVGNKNDLTSQKVVSTETAKAFADELGIPFLET 150
Query: 167 SVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLPP 205
S K NV F +T + + Q G PP
Sbjct: 151 SAKNATNVEEAFMAMTAAIKTRMASQPA-----GGAKPP 184
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++T+ D +SF W
Sbjct: 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQW 102
>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1
SV=1
Length = 202
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DS+ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA ++T+
Sbjct: 31 DSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVTYDV 90
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D +SF W +++ E + +LV NK DL Q VV+ E A + LG + T
Sbjct: 91 TDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTSQKVVSTETAKAFADELGIPFLET 150
Query: 167 SVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLPP 205
S K NV F +T + + Q G PP
Sbjct: 151 SAKNATNVEEAFMAMTAAIKTRMASQPA-----GGSKPP 184
>sp|P35286|RAB13_RAT Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2
Length = 203
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G +I F+ D+F + + + + K E EG+ ++L +WDTAGQE F IT A
Sbjct: 20 GKTCLIIRFA---EDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTA 76
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEA 152
YYRGA ++ + D SFE +W + EN + +L+ NK D+ + V E+A
Sbjct: 77 YYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQA 136
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186
+ L+R R TS K +NV+ F L L
Sbjct: 137 ERLAREHRIRFFETSAKSSVNVDEAFSSLARDIL 170
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
EG+ ++L +WDTAGQE F IT AYYRGA ++ + D SFE +W ++I
Sbjct: 53 EGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW------MKSI 106
Query: 67 KECEGEEV-RLMLWD 80
KE V RL+L +
Sbjct: 107 KENASAGVERLLLGN 121
>sp|Q9SRS5|RAA5B_ARATH Ras-related protein RABA5b OS=Arabidopsis thaliana GN=RABA5B PE=2
SV=1
Length = 217
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Query: 42 FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101
S RD F+ + V + + E EG+EV+ +WDTAGQE F A+T AYYRGA
Sbjct: 29 LSRFSRDEFDTNSKATIGVEFQTQLVEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAFGA 88
Query: 102 VITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG 160
+I + D+FE+ W ++ C + +LV NK DL D V+ EE L+ G
Sbjct: 89 LIVYDITRGDTFESVKRWLQELNTHCDTAVAQMLVGNKCDLEDIRAVSVEEGKALAEEEG 148
Query: 161 CRLMRTSVKEDINVNSIF 178
M TS + NV+ F
Sbjct: 149 LFFMETSALDATNVDKAF 166
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
EG+EV+ +WDTAGQE F A+T AYYRGA +I + D+FE+ W
Sbjct: 57 EGKEVKAQIWDTAGQERFRAVTSAYYRGAFGALIVYDITRGDTFESVKRW 106
>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1
Length = 217
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 8/176 (4%)
Query: 20 GQEEFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVR 75
G+ ++DA+ K G ++C++ T D F ++ + + K + +G+ V+
Sbjct: 6 GRPDYDALIKLLLVGDSGVGKSCLLLRFT--DDMFTSSFITTIGIDFKIKKVDVDGKLVK 63
Query: 76 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVL 134
L +WDTAGQE F IT AYYRGAQ ++ + D SF +W +E + + +L
Sbjct: 64 LQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKIL 123
Query: 135 VQNKIDLL-DQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189
V NK+DL D+ VV+ L+ G R TS K++++V F + L+ +
Sbjct: 124 VGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARM 179
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ V+L +WDTAGQE F IT AYYRGAQ ++ + D SF +W
Sbjct: 57 VDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNW 107
>sp|Q5F470|RAB8A_CHICK Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1
Length = 207
Score = 90.1 bits (222), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 48 DSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F A + + K RTI E +G+ ++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNATFISTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
Query: 107 TIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ SFE +W +E ++ +++ NK D D+ V+ E+ + L+ + G + M
Sbjct: 90 ITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFME 149
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGN 201
TS K +IN+ + F L +++ ++ E S G+
Sbjct: 150 TSAKANINIENAFFTLARDIKAKMDKKLEGNSPQGS 185
>sp|Q923S9|RAB30_MOUSE Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1
Length = 203
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
F + V E GE+V+L +WDTAGQE F +IT++YYR A A ++T+
Sbjct: 34 FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 93
Query: 110 RDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168
+SF W ++E ++ TVLV NKIDL ++ V+ + A+ S A + TS
Sbjct: 94 EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSA 153
Query: 169 KEDINVNSIFRYLTTKCLSELRQ 191
KE NV +F L + +SE RQ
Sbjct: 154 KESDNVEKLFLDLACRLISEARQ 176
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
GE+V+L +WDTAGQE F +IT++YYR A A ++T+ +SF W
Sbjct: 55 GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 103
>sp|Q15771|RAB30_HUMAN Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2
Length = 203
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
F + V E GE+V+L +WDTAGQE F +IT++YYR A A ++T+
Sbjct: 34 FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 93
Query: 110 RDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168
+SF W ++E ++ TVLV NKIDL ++ V+ + A+ S A + TS
Sbjct: 94 EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSA 153
Query: 169 KEDINVNSIFRYLTTKCLSELRQ 191
KE NV +F L + +SE RQ
Sbjct: 154 KESDNVEKLFLDLACRLISEARQ 176
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
GE+V+L +WDTAGQE F +IT++YYR A A ++T+ +SF W
Sbjct: 55 GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 103
>sp|Q17QB7|RAB30_BOVIN Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1
Length = 203
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
F + V E GE+V+L +WDTAGQE F +IT++YYR A A ++T+
Sbjct: 34 FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 93
Query: 110 RDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168
+SF W ++E ++ TVLV NKIDL ++ V+ + A+ S A + TS
Sbjct: 94 EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSA 153
Query: 169 KEDINVNSIFRYLTTKCLSELRQ 191
KE NV +F L + +SE RQ
Sbjct: 154 KESDNVEKLFLDLACRLISEARQ 176
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
GE+V+L +WDTAGQE F +IT++YYR A A ++T+ +SF W
Sbjct: 55 GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 103
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G +I F+ D+F + + + + K + EG+ ++L +WDTAGQE F IT A
Sbjct: 20 GKTCLIIRFA---EDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTA 76
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEA 152
YYRGA ++ + D SFE +W + EN + +L+ NK D+ + V E+A
Sbjct: 77 YYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQA 136
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186
+ L+R R TS K +NV+ F L L
Sbjct: 137 EKLAREHRIRFFETSAKSSVNVDEAFSSLARDIL 170
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
EG+ ++L +WDTAGQE F IT AYYRGA ++ + D SFE +W ++I
Sbjct: 53 EGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW------MKSI 106
Query: 67 KECEGEEV-RLMLWD 80
KE V RL+L +
Sbjct: 107 KENASAGVERLLLGN 121
>sp|O42819|SEC4_CANGA Ras-related protein SEC4 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC4 PE=3
SV=1
Length = 215
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 8/176 (4%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
+R + + + +D+I K G ++C++ D F + + + K
Sbjct: 4 LRTVSGSSGNGKSYDSIMKILLIGDSGVGKSCLLV--RFVEDKFNPSFITTIGIDFKIKT 61
Query: 67 KECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW-KMKVEN 125
+ G++V+L LWDTAGQE F IT AYYRGA ++ + D +F W K E+
Sbjct: 62 VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEH 121
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
E +LV NK D +D VV E+ + L++ LG + +S K D NVN IF L
Sbjct: 122 ANDEAQLLLVGNKSD-MDTRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTL 176
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
G++V+L LWDTAGQE F IT AYYRGA ++ + D +F W +T+
Sbjct: 65 NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQW------FKTV 118
Query: 67 KECEGEEVRLMLWDTAGQEEFDAITKAYYRG 97
E +E +L+L + + D Y +G
Sbjct: 119 NEHANDEAQLLL--VGNKSDMDTRVVTYEQG 147
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DS+ H + V K +G+ ++L +WDTAGQE F IT +YYRGAQ ++ +
Sbjct: 33 DSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDC 92
Query: 108 IDRDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D+DSF W +++ C + +LV NK DL+++ VV +A + + G + T
Sbjct: 93 TDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIET 152
Query: 167 SVKEDINVNSIF 178
S K NV F
Sbjct: 153 SAKNATNVEECF 164
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGAQ ++ + D+DSF W
Sbjct: 55 DGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQW 104
>sp|P25228|RAB3_DROME Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1
SV=1
Length = 220
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF +A + + K + V+L +WDTAGQE + IT AYYRGA ++ +
Sbjct: 44 DSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDV 103
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ DSF + W +++ + +LV NK D+ DQ V++ E L+ LG T
Sbjct: 104 TNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFET 163
Query: 167 SVKEDINVNSIFRYL 181
S KE++NV ++F L
Sbjct: 164 SAKENVNVKAVFERL 178
>sp|P70550|RAB8B_RAT Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1
Length = 207
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 48 DSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F + + K RTI E +G++++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNTTFISTIGIDFKIRTI-ELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
Query: 107 TIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + +
Sbjct: 90 ITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLE 149
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLP 204
TS K NV F L +++L ++ + + +G G P
Sbjct: 150 TSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGP 188
>sp|P61028|RAB8B_MOUSE Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1
Length = 207
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 48 DSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F + + K RTI E +G++++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNTTFISTIGIDFKIRTI-ELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
Query: 107 TIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + +
Sbjct: 90 ITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLE 149
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLP 204
TS K NV F L +++L ++ + + +G G P
Sbjct: 150 TSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGP 188
>sp|P34139|RAB1A_DICDI Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A
PE=2 SV=2
Length = 202
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
RTI E G+ ++L +WDTAGQE F IT +YYRGA ++ + D+ +FE W ++
Sbjct: 48 RTI-ELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEI 106
Query: 124 EN-ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ C + +LV NK DL+ + VV A + +L + TS K+ NV F +
Sbjct: 107 DRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMA 166
Query: 183 TKCLSELRQQEEEYSINGNGLPP 205
T+ + L + +++ N + P
Sbjct: 167 TEIKNRLTASQPTQTVDKNKVVP 189
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+ ++L +WDTAGQE F IT +YYRGA ++ + D+ +FE W
Sbjct: 53 NGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQW 102
>sp|Q63942|RAB3D_RAT GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2
Length = 219
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF A + + K + ++L +WDTAGQE + IT AYYRGA ++ +
Sbjct: 45 DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDI 104
Query: 108 IDRDSFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+++SF A W +++ +LV NK DL D+ VV+ E+ L+ LG
Sbjct: 105 ANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEA 164
Query: 167 SVKEDINVNSIFRYLTTKCLSELRQQEEEYSING-NGLPP 205
S KE+INV +F L ++ + E S G NG P
Sbjct: 165 SAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP 204
>sp|P11620|YPT1_SCHPO GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt1 PE=1 SV=2
Length = 203
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D++ ++ + V K E EG+ V+L +WDTAGQE F IT +YYRGA +I +
Sbjct: 31 DTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 90
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D+DSF W +++ E + +LV NK D++D+ VV A + +L + T
Sbjct: 91 TDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLET 150
Query: 167 SVKEDINVNSIF 178
S K+ NV F
Sbjct: 151 SAKDSTNVEQAF 162
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
EG+ V+L +WDTAGQE F IT +YYRGA +I + D+DSF W
Sbjct: 53 EGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQW 102
>sp|A4FV54|RAB8A_BOVIN Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1
Length = 207
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D+F + + + K E +G+ ++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDI 90
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + M T
Sbjct: 91 TNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMET 150
Query: 167 SVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGN 201
S K +INV + F L +++ ++ E S G+
Sbjct: 151 SAKANINVENAFYTLARDIKAKMDKKLEGNSPQGS 185
>sp|Q5ZIT5|RAB10_CHICK Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1
Length = 200
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 35 AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAY 94
+ CV+ F D D+F + + +K E +G++++L +WDTAGQE F IT +Y
Sbjct: 21 GKTCVL-FRFSD-DAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSY 78
Query: 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEAD 153
YRGA ++ + + SFE W ++ E + +L+ NK D+ D+ VV + +
Sbjct: 79 YRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGE 138
Query: 154 LLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQE 193
++R G R TS K +IN+ F L L + +E
Sbjct: 139 QIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKE 178
>sp|Q5REC9|RAB8B_PONAB Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1
Length = 207
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 48 DSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F + + K RTI E +G++++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNTTFISTIGIDFKIRTI-ELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
Query: 107 TIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + +
Sbjct: 90 ITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLE 149
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLP 204
TS K NV F L +++L ++ + + G G P
Sbjct: 150 TSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAGAGGP 188
>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2
Length = 207
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 48 DSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F + + + K RTI E +G+ ++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNSTFISTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
Query: 107 TIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + M
Sbjct: 90 ITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFME 149
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGN 201
TS K +INV + F L +++ ++ E S G+
Sbjct: 150 TSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGS 185
>sp|P55258|RAB8A_MOUSE Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2
Length = 207
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 48 DSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F + + + K RTI E +G+ ++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNSTFISTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
Query: 107 TIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + M
Sbjct: 90 ITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFME 149
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGN 201
TS K +INV + F L +++ ++ E S G+
Sbjct: 150 TSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGS 185
>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2
SV=1
Length = 207
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D+F + + + K E +G+ ++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDI 90
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + M T
Sbjct: 91 TNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMET 150
Query: 167 SVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGN 201
S K +INV + F L +++ ++ E S G+
Sbjct: 151 SAKANINVENAFFTLARDIKAKMDKKLEGNSPQGS 185
>sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1
Length = 207
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D+F + + + K E +G+ ++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDI 90
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + M T
Sbjct: 91 TNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMET 150
Query: 167 SVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGN 201
S K +INV + F L +++ ++ E S G+
Sbjct: 151 SAKANINVENAFFTLARDIKAKMDKKLEGNSPQGS 185
>sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1
Length = 207
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D+F + + + K E +G+ ++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDI 90
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + M T
Sbjct: 91 TNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMET 150
Query: 167 SVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGN 201
S K +INV + F L +++ ++ E S G+
Sbjct: 151 SAKANINVENAFFTLARDIKAKMDKKLEGNSPQGS 185
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2
Length = 207
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 48 DSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F + + K RTI E +G++++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNTTFISTIGIDFKIRTI-ELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
Query: 107 TIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + +
Sbjct: 90 ITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLE 149
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLP 204
TS K NV F L +++L ++ + + G G P
Sbjct: 150 TSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGP 188
>sp|Q2HJI8|RAB8B_BOVIN Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1
Length = 207
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 48 DSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F + + K RTI E +G++++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNTTFISTIGIDFKIRTI-ELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
Query: 107 TIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + +
Sbjct: 90 ITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLE 149
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLP 204
S K +NV F L +++L ++ + + +G G P
Sbjct: 150 ASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGP 188
>sp|Q5R4A3|RAB8A_PONAB Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1
Length = 207
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 48 DSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F + + + K RTI E +G+ ++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 31 DAFNSTFISTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
Query: 107 TIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ SF+ +W + E+ ++ +++ NK D+ D+ V+ E + L+ G + M
Sbjct: 90 ITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFME 149
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGN 201
TS K +INV + F L +++ ++ E S G+
Sbjct: 150 TSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGS 185
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT AYYRGA ++ + + SF+ +W
Sbjct: 52 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
>sp|P35276|RAB3D_MOUSE Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1
Length = 219
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DSF A + + K + ++L +WDTAGQE + IT AYYRGA ++ +
Sbjct: 45 DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDI 104
Query: 108 IDRDSFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
+++SF A W +++ +LV NK DL D+ VV E+ L+ LG
Sbjct: 105 ANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA 164
Query: 167 SVKEDINVNSIFRYLTTKCLSELRQQEEEYSING-NGLPP 205
S KE+INV +F L ++ + E S G NG P
Sbjct: 165 SAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP 204
>sp|Q5R5U1|RAB10_PONAB Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1
Length = 200
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
Query: 35 AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAY 94
+ CV+ F D D+F + + K E +G++++L +WDTAGQE F IT +Y
Sbjct: 21 GKTCVL-FRFSD-DAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSY 78
Query: 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEAD 153
YRGA ++ + + SFE W ++ E + +L+ NK D+ D+ VV + +
Sbjct: 79 YRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGE 138
Query: 154 LLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQE 193
++R G R TS K +IN+ F L L + +E
Sbjct: 139 QIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKE 178
>sp|P61027|RAB10_MOUSE Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1
Length = 200
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
Query: 35 AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAY 94
+ CV+ F D D+F + + K E +G++++L +WDTAGQE F IT +Y
Sbjct: 21 GKTCVL-FRFSD-DAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSY 78
Query: 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEAD 153
YRGA ++ + + SFE W ++ E + +L+ NK D+ D+ VV + +
Sbjct: 79 YRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGE 138
Query: 154 LLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQE 193
++R G R TS K +IN+ F L L + +E
Sbjct: 139 QIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKE 178
>sp|P61026|RAB10_HUMAN Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1
Length = 200
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
Query: 35 AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAY 94
+ CV+ F D D+F + + K E +G++++L +WDTAGQE F IT +Y
Sbjct: 21 GKTCVL-FRFSD-DAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSY 78
Query: 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEAD 153
YRGA ++ + + SFE W ++ E + +L+ NK D+ D+ VV + +
Sbjct: 79 YRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGE 138
Query: 154 LLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQE 193
++R G R TS K +IN+ F L L + +E
Sbjct: 139 QIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKE 178
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
DS+ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA +I +
Sbjct: 31 DSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 90
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D++SF W +++ + + +LV NK DL VVA E A + +G M T
Sbjct: 91 TDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMET 150
Query: 167 SVKEDINVNSIFRYLTTKCLSELRQQ 192
S K NV F + + Q
Sbjct: 151 SAKNATNVQQAFMAMAASIKDRMASQ 176
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA +I + D++SF W
Sbjct: 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQW 102
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1
PE=3 SV=1
Length = 201
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 48 DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
D++ ++ + V K E +G+ ++L +WDTAGQE F IT +YYRGA ++ +
Sbjct: 31 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 90
Query: 108 IDRDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D++SF W +++ C + +LV NK DL + VV+ + A + +LG + T
Sbjct: 91 TDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLET 150
Query: 167 SVKEDINVNSIFRYLTTK 184
S K NV F + +
Sbjct: 151 SAKNAANVEKAFMMMAAQ 168
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W
Sbjct: 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 102
>sp|P24409|RAB10_CANFA Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=1 SV=1
Length = 200
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
Query: 35 AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAY 94
+ CV+ F D D+F + + K E +G++++L +WDTAGQE F IT +Y
Sbjct: 21 GKTCVL-FRFSD-DAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSY 78
Query: 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEAD 153
YRGA ++ + + SFE W ++ E + +L+ NK D+ D+ VV + +
Sbjct: 79 YRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGE 138
Query: 154 LLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQE 193
++R G R TS K +IN+ F L L + +E
Sbjct: 139 QIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVKE 178
>sp|P07560|SEC4_YEAST Ras-related protein SEC4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC4 PE=1 SV=1
Length = 215
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 8/176 (4%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
+R + + + +D+I K G ++C++ D F + + + K
Sbjct: 4 LRTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLV--RFVEDKFNPSFITTIGIDFKIKT 61
Query: 67 KECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW-KMKVEN 125
+ G++V+L LWDTAGQE F IT AYYRGA ++ + D +F W K E+
Sbjct: 62 VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH 121
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
E +LV NK D ++ VV ++ + L++ LG + +S K D NVN IF L
Sbjct: 122 ANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIK 67
G++V+L LWDTAGQE F IT AYYRGA ++ + D +F W +T+
Sbjct: 66 GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW------FKTVN 119
Query: 68 ECEGEEVRLML 78
E +E +L+L
Sbjct: 120 EHANDEAQLLL 130
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 34 GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
G ++ FS DSF + + + K E EG+ ++L +WDTAGQE F IT A
Sbjct: 27 GKSCLLLRFS---EDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTA 83
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEA 152
YYRGA ++ + D SF +W +E + + +L+ NK D+ ++ VV
Sbjct: 84 YYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRG 143
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIF 178
L+ G + + TS K INV F
Sbjct: 144 KSLADEYGIKFLETSAKNSINVEEAF 169
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
EG+ ++L +WDTAGQE F IT AYYRGA ++ + D SF +W
Sbjct: 60 EGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNW 109
>sp|Q96DA2|RB39B_HUMAN Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1
Length = 213
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--KMKVENECG 128
G+ ++L +WDTAGQE F +IT+AYYR + ++ F +R SF+ H W + KV +
Sbjct: 55 GKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPY 114
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+I VLV +K DL Q V EA+ L+ A G + + TS ++ INV F LT
Sbjct: 115 QIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLT 168
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+ ++L +WDTAGQE F +IT+AYYR + ++ F +R SF+ H W
Sbjct: 55 GKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW 103
>sp|Q8BHC1|RB39B_MOUSE Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1
Length = 213
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--KMKVENECG 128
G+ ++L +WDTAGQE F +IT+AYYR + ++ F +R SF+ H W + KV +
Sbjct: 55 GKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPY 114
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+I VLV +K DL Q V EA+ L+ A G + + TS ++ INV F LT
Sbjct: 115 QIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLT 168
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+ ++L +WDTAGQE F +IT+AYYR + ++ F +R SF+ H W
Sbjct: 55 GKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW 103
>sp|Q17QU4|RB39B_BOVIN Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1
Length = 213
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--KMKVENECG 128
G+ ++L +WDTAGQE F +IT+AYYR + ++ F +R SF+ H W + KV +
Sbjct: 55 GKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPY 114
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+I VLV +K DL Q V EA+ L+ A G + + TS ++ INV F LT
Sbjct: 115 QIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLT 168
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+ ++L +WDTAGQE F +IT+AYYR + ++ F +R SF+ H W
Sbjct: 55 GKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEW 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,777,801
Number of Sequences: 539616
Number of extensions: 2626304
Number of successful extensions: 8809
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 6557
Number of HSP's gapped (non-prelim): 2031
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)