Query psy2518
Match_columns 208
No_of_seqs 165 out of 1836
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 18:14:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.8E-47 4E-52 279.0 16.3 175 21-195 3-181 (205)
2 KOG0078|consensus 100.0 5.2E-45 1.1E-49 269.7 17.5 170 22-191 7-179 (207)
3 KOG0098|consensus 100.0 2.2E-44 4.8E-49 260.1 13.1 171 24-194 3-176 (216)
4 KOG0094|consensus 100.0 5.9E-43 1.3E-47 254.6 12.9 166 24-189 19-188 (221)
5 KOG0092|consensus 100.0 1.9E-42 4.1E-47 251.8 14.5 166 26-191 4-172 (200)
6 KOG0087|consensus 100.0 5.3E-42 1.2E-46 252.7 14.6 173 21-193 8-183 (222)
7 KOG0080|consensus 100.0 2.3E-42 4.9E-47 244.0 11.4 170 22-191 6-179 (209)
8 KOG0079|consensus 100.0 1.6E-42 3.4E-47 241.7 9.5 168 22-189 3-172 (198)
9 KOG0093|consensus 100.0 2.7E-41 5.9E-46 235.2 13.5 170 23-192 17-189 (193)
10 KOG0095|consensus 100.0 5.2E-40 1.1E-44 229.6 13.7 173 21-193 1-176 (213)
11 KOG0086|consensus 100.0 2.9E-40 6.2E-45 231.7 10.7 174 20-193 2-178 (214)
12 cd04121 Rab40 Rab40 subfamily. 100.0 3.5E-39 7.6E-44 243.7 17.3 168 23-190 2-171 (189)
13 KOG0394|consensus 100.0 5.1E-40 1.1E-44 237.1 11.9 166 25-190 7-182 (210)
14 KOG0081|consensus 100.0 4.7E-39 1E-43 226.9 13.3 177 20-196 2-191 (219)
15 KOG0091|consensus 100.0 3.5E-39 7.5E-44 228.5 10.8 169 24-192 5-179 (213)
16 cd04120 Rab12 Rab12 subfamily. 100.0 5.3E-38 1.1E-42 239.4 15.9 162 28-189 1-166 (202)
17 KOG0083|consensus 100.0 2.9E-38 6.2E-43 217.0 11.1 158 31-188 1-162 (192)
18 KOG0088|consensus 100.0 7.8E-39 1.7E-43 225.7 7.9 169 25-193 11-182 (218)
19 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.5E-37 3.2E-42 233.7 15.0 161 25-186 3-180 (182)
20 cd04133 Rop_like Rop subfamily 100.0 1.3E-37 2.9E-42 232.6 14.4 158 28-186 2-173 (176)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.3E-36 2.8E-41 235.7 16.8 163 25-188 11-190 (232)
22 cd04131 Rnd Rnd subfamily. Th 100.0 9E-37 2E-41 228.8 14.8 159 27-186 1-176 (178)
23 cd01875 RhoG RhoG subfamily. 100.0 2E-36 4.4E-41 229.4 15.5 162 26-188 2-179 (191)
24 KOG0097|consensus 100.0 1.2E-35 2.5E-40 206.2 12.7 171 21-191 5-178 (215)
25 cd04122 Rab14 Rab14 subfamily. 100.0 4.4E-35 9.6E-40 217.1 16.4 161 27-187 2-165 (166)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.1E-35 8.9E-40 218.7 15.8 160 27-187 2-165 (172)
27 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.2E-35 6.9E-40 219.9 14.5 158 27-185 1-174 (175)
28 cd04127 Rab27A Rab27a subfamil 100.0 2E-34 4.4E-39 216.1 16.2 163 25-187 2-178 (180)
29 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.3E-34 2.8E-39 217.9 14.8 159 28-187 1-167 (182)
30 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.1E-34 6.8E-39 219.1 16.9 164 28-191 1-173 (201)
31 cd04117 Rab15 Rab15 subfamily. 100.0 1.7E-34 3.7E-39 213.1 14.8 157 28-184 1-160 (161)
32 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.5E-34 5.4E-39 221.8 16.0 162 28-190 2-180 (222)
33 PF00071 Ras: Ras family; Int 100.0 1.1E-34 2.4E-39 213.8 13.4 158 29-186 1-161 (162)
34 cd01867 Rab8_Rab10_Rab13_like 100.0 5.6E-34 1.2E-38 211.5 16.3 162 26-187 2-166 (167)
35 cd04110 Rab35 Rab35 subfamily. 100.0 7.9E-34 1.7E-38 216.5 17.2 169 24-192 3-173 (199)
36 cd01873 RhoBTB RhoBTB subfamil 100.0 3.1E-34 6.8E-39 217.8 14.6 156 27-184 2-194 (195)
37 PLN03110 Rab GTPase; Provision 100.0 1.4E-33 2.9E-38 217.8 17.3 169 23-191 8-179 (216)
38 cd01865 Rab3 Rab3 subfamily. 100.0 1.3E-33 2.7E-38 209.2 16.3 161 27-187 1-164 (165)
39 cd01871 Rac1_like Rac1-like su 100.0 5.9E-34 1.3E-38 212.9 14.5 156 28-184 2-173 (174)
40 PLN03071 GTP-binding nuclear p 100.0 5.3E-34 1.1E-38 220.4 14.5 162 25-188 11-174 (219)
41 KOG0393|consensus 100.0 9.3E-34 2E-38 210.6 15.1 165 25-190 2-183 (198)
42 PTZ00369 Ras-like protein; Pro 100.0 2.1E-33 4.7E-38 212.5 16.2 166 26-192 4-173 (189)
43 cd04109 Rab28 Rab28 subfamily. 100.0 2E-33 4.3E-38 216.8 15.8 161 28-188 1-168 (215)
44 KOG0395|consensus 100.0 9.2E-33 2E-37 209.0 19.1 161 26-187 2-166 (196)
45 cd04125 RabA_like RabA-like su 100.0 3.4E-33 7.3E-38 211.2 16.6 165 28-192 1-168 (188)
46 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.9E-33 6.2E-38 207.3 15.9 160 27-186 2-164 (166)
47 cd04111 Rab39 Rab39 subfamily. 100.0 2.8E-33 6.1E-38 215.3 16.3 165 27-191 2-171 (211)
48 smart00176 RAN Ran (Ras-relate 100.0 2E-33 4.2E-38 214.0 14.8 154 33-188 1-156 (200)
49 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.8E-33 8.2E-38 207.8 15.8 159 29-187 2-166 (170)
50 cd04134 Rho3 Rho3 subfamily. 100.0 2.1E-33 4.5E-38 212.6 14.2 161 28-189 1-177 (189)
51 cd04136 Rap_like Rap-like subf 100.0 3.6E-33 7.9E-38 205.8 14.3 157 28-185 2-162 (163)
52 cd04144 Ras2 Ras2 subfamily. 100.0 5.3E-33 1.2E-37 210.5 15.1 162 29-191 1-168 (190)
53 PLN03108 Rab family protein; P 100.0 1.5E-32 3.3E-37 211.1 17.6 167 24-190 3-172 (210)
54 cd04119 RJL RJL (RabJ-Like) su 100.0 7.1E-33 1.5E-37 204.8 15.0 159 28-186 1-167 (168)
55 cd04126 Rab20 Rab20 subfamily. 100.0 1E-32 2.2E-37 212.7 15.9 160 28-192 1-196 (220)
56 cd04175 Rap1 Rap1 subgroup. T 100.0 1E-32 2.2E-37 204.0 15.0 157 28-185 2-162 (164)
57 cd01866 Rab2 Rab2 subfamily. 100.0 2E-32 4.3E-37 203.4 16.4 164 24-187 1-167 (168)
58 cd01868 Rab11_like Rab11-like. 100.0 1.8E-32 3.9E-37 202.7 15.9 160 26-185 2-164 (165)
59 cd04106 Rab23_lke Rab23-like s 100.0 1.2E-32 2.7E-37 202.8 15.0 157 28-184 1-161 (162)
60 PTZ00099 rab6; Provisional 100.0 9.2E-32 2E-36 201.1 18.6 143 47-189 2-145 (176)
61 cd00877 Ran Ran (Ras-related n 100.0 1.9E-32 4.1E-37 203.2 14.8 158 28-187 1-160 (166)
62 cd01864 Rab19 Rab19 subfamily. 100.0 2.9E-32 6.2E-37 201.8 15.6 159 26-184 2-164 (165)
63 cd04176 Rap2 Rap2 subgroup. T 100.0 2.1E-32 4.6E-37 201.9 14.6 157 28-185 2-162 (163)
64 cd04112 Rab26 Rab26 subfamily. 100.0 3.9E-32 8.4E-37 205.9 15.9 162 28-189 1-166 (191)
65 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.4E-32 9.4E-37 201.9 15.3 159 27-185 2-168 (170)
66 cd04132 Rho4_like Rho4-like su 100.0 6.2E-32 1.4E-36 203.9 15.6 163 28-191 1-172 (187)
67 cd04116 Rab9 Rab9 subfamily. 100.0 7.9E-32 1.7E-36 200.3 15.5 159 25-184 3-169 (170)
68 cd04103 Centaurin_gamma Centau 100.0 3.2E-32 7E-37 200.4 13.1 150 28-184 1-157 (158)
69 cd04140 ARHI_like ARHI subfami 100.0 1.1E-31 2.3E-36 198.8 14.8 155 28-183 2-162 (165)
70 cd04124 RabL2 RabL2 subfamily. 100.0 1.3E-31 2.8E-36 197.7 15.1 158 28-188 1-160 (161)
71 smart00174 RHO Rho (Ras homolo 100.0 5E-32 1.1E-36 202.0 13.0 156 30-186 1-172 (174)
72 cd04113 Rab4 Rab4 subfamily. 100.0 1.5E-31 3.2E-36 197.1 14.9 157 28-184 1-160 (161)
73 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.8E-31 3.8E-36 197.1 15.1 158 28-185 1-163 (164)
74 smart00173 RAS Ras subfamily o 100.0 1.7E-31 3.7E-36 197.2 14.7 158 28-186 1-162 (164)
75 cd04118 Rab24 Rab24 subfamily. 100.0 3.3E-31 7.1E-36 201.0 16.3 164 28-191 1-171 (193)
76 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.6E-31 3.4E-36 199.4 14.1 155 28-183 1-171 (173)
77 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.1E-31 6.6E-36 194.9 15.1 156 28-185 2-161 (162)
78 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.8E-31 8.2E-36 195.2 15.1 158 27-185 2-163 (164)
79 cd04142 RRP22 RRP22 subfamily. 100.0 1.8E-31 3.9E-36 203.2 13.7 163 28-190 1-178 (198)
80 cd01892 Miro2 Miro2 subfamily. 100.0 1.8E-31 3.8E-36 198.6 13.0 161 25-186 2-166 (169)
81 cd04143 Rhes_like Rhes_like su 100.0 4.4E-31 9.6E-36 207.1 15.1 157 28-185 1-170 (247)
82 KOG4252|consensus 100.0 3.5E-33 7.6E-38 200.9 2.1 172 21-192 14-187 (246)
83 PLN03118 Rab family protein; P 100.0 2.8E-30 6E-35 198.7 16.6 168 21-189 8-180 (211)
84 cd01861 Rab6 Rab6 subfamily. 100.0 1.8E-30 3.9E-35 191.1 14.9 157 28-184 1-160 (161)
85 smart00175 RAB Rab subfamily o 100.0 3E-30 6.5E-35 190.3 15.7 160 28-187 1-163 (164)
86 cd04148 RGK RGK subfamily. Th 100.0 3E-30 6.4E-35 199.8 16.0 161 28-190 1-167 (221)
87 cd04146 RERG_RasL11_like RERG/ 100.0 1.5E-30 3.3E-35 192.5 13.5 157 29-186 1-164 (165)
88 cd01860 Rab5_related Rab5-rela 100.0 5E-30 1.1E-34 189.1 15.9 159 27-185 1-162 (163)
89 cd04177 RSR1 RSR1 subgroup. R 100.0 5.2E-30 1.1E-34 190.3 15.2 158 28-186 2-164 (168)
90 cd04135 Tc10 TC10 subfamily. 100.0 3.4E-30 7.4E-35 192.1 14.2 157 28-185 1-173 (174)
91 cd01862 Rab7 Rab7 subfamily. 100.0 3E-29 6.5E-34 186.4 15.9 161 28-188 1-169 (172)
92 cd04114 Rab30 Rab30 subfamily. 100.0 3.6E-29 7.9E-34 185.6 15.8 163 23-185 3-168 (169)
93 cd04123 Rab21 Rab21 subfamily. 100.0 3.4E-29 7.4E-34 184.0 15.3 158 28-185 1-161 (162)
94 cd01863 Rab18 Rab18 subfamily. 100.0 3.3E-29 7E-34 184.4 15.1 156 28-184 1-160 (161)
95 cd01870 RhoA_like RhoA-like su 100.0 2.3E-29 5E-34 187.8 14.4 157 28-185 2-174 (175)
96 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.3E-29 7.2E-34 190.7 13.2 145 28-172 1-176 (202)
97 cd04129 Rho2 Rho2 subfamily. 100.0 8.1E-29 1.8E-33 187.1 14.6 162 28-190 2-177 (187)
98 cd04139 RalA_RalB RalA/RalB su 100.0 2.7E-28 5.9E-33 179.7 15.5 158 28-186 1-162 (164)
99 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.4E-29 5.3E-34 186.2 8.0 151 29-183 1-163 (164)
100 PTZ00132 GTP-binding nuclear p 100.0 7.6E-28 1.7E-32 185.6 15.7 165 23-189 5-171 (215)
101 cd04149 Arf6 Arf6 subfamily. 100.0 1.6E-28 3.5E-33 182.5 10.9 151 26-183 8-167 (168)
102 cd04147 Ras_dva Ras-dva subfam 100.0 1.2E-27 2.7E-32 182.2 14.6 157 29-186 1-163 (198)
103 PLN00223 ADP-ribosylation fact 100.0 6.9E-28 1.5E-32 181.2 12.7 152 26-187 16-179 (181)
104 cd00876 Ras Ras family. The R 100.0 2.2E-27 4.7E-32 174.1 14.2 155 29-184 1-159 (160)
105 cd00154 Rab Rab family. Rab G 100.0 2.5E-27 5.4E-32 172.9 14.4 155 28-182 1-158 (159)
106 cd04158 ARD1 ARD1 subfamily. 100.0 8E-28 1.7E-32 178.8 11.7 152 29-187 1-162 (169)
107 cd00157 Rho Rho (Ras homology) 100.0 2.1E-27 4.6E-32 176.2 13.8 155 28-183 1-170 (171)
108 cd01893 Miro1 Miro1 subfamily. 100.0 1.5E-27 3.2E-32 176.8 12.5 158 28-187 1-165 (166)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.5E-27 7.7E-32 177.6 14.6 162 27-191 3-175 (183)
110 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.1E-27 2.4E-32 176.5 11.5 149 28-183 1-158 (159)
111 smart00177 ARF ARF-like small 100.0 4.6E-28 1E-32 181.2 9.3 153 26-185 12-173 (175)
112 PLN00023 GTP-binding protein; 99.9 1.3E-27 2.8E-32 190.9 12.2 138 24-161 18-189 (334)
113 cd04137 RheB Rheb (Ras Homolog 99.9 7.8E-27 1.7E-31 175.0 15.7 162 28-190 2-167 (180)
114 PTZ00133 ADP-ribosylation fact 99.9 5.7E-27 1.2E-31 176.3 13.7 157 26-189 16-181 (182)
115 cd04154 Arl2 Arl2 subfamily. 99.9 1.8E-26 3.9E-31 172.1 11.3 154 23-183 10-172 (173)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.1E-25 2.3E-30 168.2 9.8 151 26-183 14-173 (174)
117 cd04157 Arl6 Arl6 subfamily. 99.9 1.9E-25 4.1E-30 164.3 10.9 149 29-183 1-161 (162)
118 cd04161 Arl2l1_Arl13_like Arl2 99.9 6E-26 1.3E-30 168.5 7.6 148 29-183 1-166 (167)
119 cd04156 ARLTS1 ARLTS1 subfamil 99.9 4.9E-25 1.1E-29 162.0 10.3 149 29-183 1-159 (160)
120 cd04151 Arl1 Arl1 subfamily. 99.9 2.2E-25 4.8E-30 163.7 8.1 148 29-183 1-157 (158)
121 cd00879 Sar1 Sar1 subfamily. 99.9 1.4E-24 3.1E-29 164.1 12.4 154 24-184 16-189 (190)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.2E-24 2.6E-29 159.6 9.2 148 29-183 1-157 (158)
123 KOG0096|consensus 99.9 6.9E-25 1.5E-29 159.5 6.8 164 25-190 8-173 (216)
124 cd04160 Arfrp1 Arfrp1 subfamil 99.9 4.8E-24 1E-28 157.8 11.1 149 29-183 1-166 (167)
125 COG1100 GTPase SAR1 and relate 99.9 6.8E-23 1.5E-27 158.2 15.2 165 26-190 4-189 (219)
126 smart00178 SAR Sar1p-like memb 99.9 2E-23 4.3E-28 157.3 11.7 154 24-184 14-183 (184)
127 KOG1673|consensus 99.9 2.9E-23 6.4E-28 146.4 11.4 170 19-188 12-188 (205)
128 cd01890 LepA LepA subfamily. 99.9 4.5E-23 9.7E-28 154.3 11.7 152 29-185 2-176 (179)
129 cd04159 Arl10_like Arl10-like 99.9 3.7E-23 8E-28 150.9 10.2 149 29-183 1-158 (159)
130 PF00025 Arf: ADP-ribosylation 99.9 9.7E-23 2.1E-27 152.4 10.6 155 24-185 11-175 (175)
131 KOG4423|consensus 99.9 4.3E-25 9.3E-30 160.1 -3.6 166 24-189 22-197 (229)
132 TIGR02528 EutP ethanolamine ut 99.9 1.3E-22 2.8E-27 146.4 7.5 132 29-182 2-141 (142)
133 KOG0073|consensus 99.9 2.8E-21 6.1E-26 137.5 13.7 157 25-187 14-179 (185)
134 cd04155 Arl3 Arl3 subfamily. 99.9 9.9E-22 2.1E-26 146.2 10.7 149 25-183 12-172 (173)
135 cd01897 NOG NOG1 is a nucleola 99.9 1.1E-21 2.5E-26 145.1 10.8 151 29-185 2-167 (168)
136 TIGR00231 small_GTP small GTP- 99.9 2.7E-21 5.8E-26 140.5 12.1 154 27-181 1-159 (161)
137 KOG0070|consensus 99.9 1E-20 2.2E-25 137.8 12.5 156 25-187 15-179 (181)
138 cd04171 SelB SelB subfamily. 99.9 4.4E-21 9.5E-26 141.1 10.5 149 29-183 2-163 (164)
139 cd01898 Obg Obg subfamily. Th 99.8 8.4E-21 1.8E-25 140.7 10.2 152 29-184 2-169 (170)
140 cd01891 TypA_BipA TypA (tyrosi 99.8 1.3E-20 2.8E-25 143.1 8.7 147 27-176 2-172 (194)
141 KOG3883|consensus 99.8 5.7E-20 1.2E-24 129.5 10.7 167 25-192 7-181 (198)
142 cd01878 HflX HflX subfamily. 99.8 2.5E-20 5.5E-25 142.5 9.7 151 25-184 39-203 (204)
143 cd01879 FeoB Ferrous iron tran 99.8 8E-20 1.7E-24 133.7 11.1 145 32-184 1-155 (158)
144 PRK04213 GTP-binding protein; 99.8 8.6E-21 1.9E-25 144.7 6.0 149 25-187 7-193 (201)
145 cd00882 Ras_like_GTPase Ras-li 99.8 3.6E-19 7.9E-24 127.9 12.6 150 32-182 1-156 (157)
146 TIGR01393 lepA GTP-binding pro 99.8 5.1E-19 1.1E-23 154.0 12.9 157 26-187 2-181 (595)
147 KOG0075|consensus 99.8 5.4E-19 1.2E-23 123.8 10.4 152 25-185 18-181 (186)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 5.3E-19 1.1E-23 130.6 10.5 154 29-185 2-165 (168)
149 PRK03003 GTP-binding protein D 99.8 4.3E-19 9.4E-24 151.5 11.4 157 26-187 210-383 (472)
150 PRK12299 obgE GTPase CgtA; Rev 99.8 1E-18 2.2E-23 142.5 12.7 161 24-187 155-329 (335)
151 TIGR00450 mnmE_trmE_thdF tRNA 99.8 9.5E-19 2.1E-23 147.5 12.6 154 22-189 198-363 (442)
152 PF08477 Miro: Miro-like prote 99.8 2.2E-19 4.8E-24 125.6 6.8 112 29-140 1-119 (119)
153 TIGR03156 GTP_HflX GTP-binding 99.8 2.4E-18 5.3E-23 141.3 12.6 149 26-184 188-350 (351)
154 KOG0071|consensus 99.8 7.9E-18 1.7E-22 117.1 11.8 154 26-185 16-177 (180)
155 PRK15494 era GTPase Era; Provi 99.8 4E-18 8.6E-23 139.7 11.6 151 25-186 50-216 (339)
156 PRK15467 ethanolamine utilizat 99.8 1.2E-18 2.6E-23 128.1 7.5 138 29-188 3-149 (158)
157 PRK03003 GTP-binding protein D 99.8 3.6E-18 7.9E-23 145.8 11.5 153 25-187 36-200 (472)
158 TIGR02729 Obg_CgtA Obg family 99.8 8.6E-18 1.9E-22 136.9 12.4 158 24-185 154-328 (329)
159 PRK05291 trmE tRNA modificatio 99.8 3.2E-18 6.9E-23 145.0 10.2 148 24-187 212-371 (449)
160 cd01881 Obg_like The Obg-like 99.8 2.8E-18 6.1E-23 127.6 8.3 150 32-184 1-175 (176)
161 cd01889 SelB_euk SelB subfamil 99.7 6.9E-18 1.5E-22 127.9 8.9 156 28-186 1-186 (192)
162 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.3E-17 2.7E-22 121.6 10.0 144 28-185 2-156 (157)
163 cd01894 EngA1 EngA1 subfamily. 99.7 1.8E-17 3.8E-22 120.9 9.4 143 31-184 1-156 (157)
164 TIGR00487 IF-2 translation ini 99.7 5.3E-17 1.1E-21 140.9 12.5 152 25-183 85-247 (587)
165 TIGR00436 era GTP-binding prot 99.7 4.9E-17 1.1E-21 129.6 11.3 150 29-186 2-164 (270)
166 KOG0076|consensus 99.7 1.2E-17 2.5E-22 120.3 6.5 155 27-187 17-188 (197)
167 PRK00454 engB GTP-binding prot 99.7 6.9E-17 1.5E-21 122.5 11.2 154 24-185 21-193 (196)
168 PRK11058 GTPase HflX; Provisio 99.7 9.7E-17 2.1E-21 134.7 12.9 154 28-187 198-363 (426)
169 TIGR03594 GTPase_EngA ribosome 99.7 9.5E-17 2.1E-21 135.8 12.7 157 25-187 170-345 (429)
170 cd00881 GTP_translation_factor 99.7 5E-17 1.1E-21 122.1 9.9 152 29-185 1-186 (189)
171 TIGR00475 selB selenocysteine- 99.7 7.3E-17 1.6E-21 140.5 11.2 150 29-186 2-166 (581)
172 cd01895 EngA2 EngA2 subfamily. 99.7 2.7E-16 5.8E-21 116.3 12.5 153 27-184 2-173 (174)
173 TIGR00437 feoB ferrous iron tr 99.7 8.4E-17 1.8E-21 140.2 10.6 144 34-185 1-154 (591)
174 TIGR03598 GTPase_YsxC ribosome 99.7 6.9E-17 1.5E-21 121.1 8.7 147 23-175 14-179 (179)
175 KOG0072|consensus 99.7 1.2E-16 2.7E-21 111.7 9.1 156 26-187 17-180 (182)
176 PRK00093 GTP-binding protein D 99.7 1.9E-16 4.1E-21 134.3 11.7 145 28-184 2-160 (435)
177 KOG1707|consensus 99.7 1.5E-17 3.2E-22 139.5 4.7 162 25-188 7-177 (625)
178 cd04105 SR_beta Signal recogni 99.7 2.8E-16 6.1E-21 120.1 11.3 114 29-143 2-123 (203)
179 PRK05433 GTP-binding protein L 99.7 2.7E-16 5.9E-21 137.2 12.5 159 25-188 5-186 (600)
180 CHL00189 infB translation init 99.7 5.3E-16 1.2E-20 136.9 13.1 152 25-185 242-409 (742)
181 KOG0074|consensus 99.7 1.5E-16 3.3E-21 110.9 7.5 158 23-184 13-177 (185)
182 cd04163 Era Era subfamily. Er 99.7 5.4E-16 1.2E-20 113.7 10.6 154 27-184 3-167 (168)
183 PRK12297 obgE GTPase CgtA; Rev 99.7 1.4E-15 3E-20 127.3 13.7 159 24-189 155-330 (424)
184 PRK05306 infB translation init 99.7 1.4E-15 2.9E-20 135.4 12.5 150 24-184 287-450 (787)
185 cd01888 eIF2_gamma eIF2-gamma 99.6 5.4E-16 1.2E-20 118.6 8.3 107 74-185 83-198 (203)
186 PRK09518 bifunctional cytidyla 99.6 2.4E-15 5.3E-20 134.1 13.7 154 26-187 449-622 (712)
187 TIGR03594 GTPase_EngA ribosome 99.6 1.6E-15 3.5E-20 128.4 11.1 147 29-187 1-161 (429)
188 PRK12296 obgE GTPase CgtA; Rev 99.6 3.2E-15 7E-20 126.7 12.3 161 24-189 156-343 (500)
189 cd00880 Era_like Era (E. coli 99.6 1.8E-15 3.8E-20 109.8 8.1 149 32-184 1-162 (163)
190 PRK09518 bifunctional cytidyla 99.6 3.6E-15 7.7E-20 133.1 11.5 153 25-187 273-437 (712)
191 PRK00089 era GTPase Era; Revie 99.6 5.3E-15 1.2E-19 119.1 11.3 154 27-186 5-171 (292)
192 PRK00093 GTP-binding protein D 99.6 5.9E-15 1.3E-19 125.1 11.7 156 25-186 171-344 (435)
193 cd01876 YihA_EngB The YihA (En 99.6 5E-15 1.1E-19 108.8 9.6 148 29-184 1-169 (170)
194 TIGR00491 aIF-2 translation in 99.6 8E-15 1.7E-19 127.3 11.7 151 29-185 6-215 (590)
195 PF02421 FeoB_N: Ferrous iron 99.6 1.7E-15 3.7E-20 110.1 6.1 146 28-181 1-156 (156)
196 PRK09554 feoB ferrous iron tra 99.6 1.3E-14 2.8E-19 129.5 12.6 152 26-185 2-167 (772)
197 COG2229 Predicted GTPase [Gene 99.6 5.6E-14 1.2E-18 102.6 12.6 153 25-184 8-176 (187)
198 PRK10218 GTP-binding protein; 99.6 2.4E-14 5.1E-19 124.8 12.6 159 26-187 4-196 (607)
199 TIGR00157 ribosome small subun 99.6 9.3E-15 2E-19 114.7 8.9 96 85-183 24-120 (245)
200 TIGR00483 EF-1_alpha translati 99.6 8.5E-15 1.8E-19 123.8 9.1 153 25-179 5-200 (426)
201 cd01896 DRG The developmentall 99.6 3.3E-14 7.1E-19 110.9 11.7 147 29-185 2-225 (233)
202 PRK12298 obgE GTPase CgtA; Rev 99.6 4.4E-14 9.6E-19 117.5 12.3 160 24-187 156-334 (390)
203 TIGR01394 TypA_BipA GTP-bindin 99.6 1.4E-14 2.9E-19 126.3 9.6 157 28-187 2-192 (594)
204 PRK04000 translation initiatio 99.5 2.9E-14 6.3E-19 119.7 9.7 159 23-186 5-201 (411)
205 PF00009 GTP_EFTU: Elongation 99.5 2.2E-14 4.7E-19 108.4 7.4 158 26-186 2-187 (188)
206 PRK10512 selenocysteinyl-tRNA- 99.5 1E-13 2.2E-18 121.4 11.1 149 29-185 2-165 (614)
207 TIGR03680 eif2g_arch translati 99.5 4.2E-14 9.1E-19 118.7 8.4 113 73-186 79-196 (406)
208 cd04167 Snu114p Snu114p subfam 99.5 7.1E-14 1.5E-18 107.6 7.2 111 29-142 2-136 (213)
209 PRK12317 elongation factor 1-a 99.5 8.8E-14 1.9E-18 117.6 8.2 112 68-179 78-198 (425)
210 PF10662 PduV-EutP: Ethanolami 99.5 1.1E-13 2.4E-18 98.6 7.0 135 28-182 2-142 (143)
211 PRK04004 translation initiatio 99.5 5.1E-13 1.1E-17 116.5 11.7 151 28-184 7-216 (586)
212 cd01850 CDC_Septin CDC/Septin. 99.5 1.2E-13 2.6E-18 110.2 6.8 140 27-170 4-186 (276)
213 cd04168 TetM_like Tet(M)-like 99.5 8.1E-13 1.8E-17 103.2 10.9 111 29-142 1-129 (237)
214 cd04166 CysN_ATPS CysN_ATPS su 99.5 1.7E-13 3.8E-18 105.1 6.9 103 73-177 76-185 (208)
215 smart00010 small_GTPase Small 99.4 4.1E-13 8.8E-18 94.1 5.5 111 28-175 1-115 (124)
216 COG1159 Era GTPase [General fu 99.4 4.4E-12 9.5E-17 99.7 9.9 158 26-187 5-173 (298)
217 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 1.4E-12 3.1E-17 100.9 5.8 154 29-186 1-176 (232)
218 cd01883 EF1_alpha Eukaryotic e 99.3 3.7E-12 8.1E-17 98.5 7.0 102 71-175 74-194 (219)
219 cd04165 GTPBP1_like GTPBP1-lik 99.3 1.1E-11 2.3E-16 96.1 9.0 105 74-182 84-219 (224)
220 COG1160 Predicted GTPases [Gen 99.3 2.5E-11 5.5E-16 100.4 10.8 147 28-186 4-165 (444)
221 PRK13351 elongation factor G; 99.3 3.5E-11 7.7E-16 107.4 11.8 112 25-143 6-139 (687)
222 cd04104 p47_IIGP_like p47 (47- 99.3 2E-11 4.3E-16 92.9 8.6 157 28-191 2-189 (197)
223 COG0486 ThdF Predicted GTPase 99.3 4.2E-11 9.1E-16 99.4 11.0 156 22-188 212-378 (454)
224 COG1160 Predicted GTPases [Gen 99.3 9.1E-11 2E-15 97.2 12.6 156 26-186 177-351 (444)
225 cd04169 RF3 RF3 subfamily. Pe 99.3 3.9E-11 8.5E-16 95.3 10.1 80 61-143 58-137 (267)
226 cd01885 EF2 EF2 (for archaea a 99.3 1.9E-11 4.2E-16 94.4 7.9 79 71-152 70-149 (222)
227 cd01884 EF_Tu EF-Tu subfamily. 99.3 7.1E-11 1.5E-15 89.7 10.8 144 27-175 2-172 (195)
228 PRK00741 prfC peptide chain re 99.3 6.5E-11 1.4E-15 102.2 11.8 116 24-142 7-144 (526)
229 KOG0462|consensus 99.3 8E-11 1.7E-15 98.9 11.6 112 70-187 121-236 (650)
230 PRK12736 elongation factor Tu; 99.2 6.8E-11 1.5E-15 99.1 11.0 156 25-185 10-200 (394)
231 COG0481 LepA Membrane GTPase L 99.2 1.7E-10 3.6E-15 95.7 12.7 115 70-189 72-189 (603)
232 TIGR00485 EF-Tu translation el 99.2 6E-11 1.3E-15 99.4 10.3 143 25-172 10-179 (394)
233 KOG0077|consensus 99.2 2.3E-11 5.1E-16 87.4 6.4 154 24-183 17-190 (193)
234 cd01899 Ygr210 Ygr210 subfamil 99.2 3.8E-11 8.3E-16 97.4 7.4 79 30-108 1-110 (318)
235 PRK12735 elongation factor Tu; 99.2 1.2E-10 2.6E-15 97.6 10.7 155 25-184 10-201 (396)
236 PRK14845 translation initiatio 99.2 5.9E-10 1.3E-14 102.0 15.6 103 76-184 528-671 (1049)
237 TIGR02034 CysN sulfate adenyly 99.2 2.6E-10 5.6E-15 95.9 11.0 104 72-177 78-188 (406)
238 cd04170 EF-G_bact Elongation f 99.2 2.3E-10 4.9E-15 91.2 9.6 97 72-173 62-160 (268)
239 COG4917 EutP Ethanolamine util 99.1 1.2E-10 2.5E-15 80.1 6.0 137 29-184 3-144 (148)
240 cd00066 G-alpha G protein alph 99.1 6.2E-10 1.3E-14 90.7 11.2 140 48-188 128-313 (317)
241 KOG1707|consensus 99.1 2.9E-10 6.4E-15 96.2 9.2 169 16-188 414-585 (625)
242 KOG0090|consensus 99.1 4.6E-09 9.9E-14 78.8 14.2 150 29-184 40-237 (238)
243 cd01855 YqeH YqeH. YqeH is an 99.1 8.6E-10 1.9E-14 83.4 10.0 94 87-186 24-125 (190)
244 PRK05124 cysN sulfate adenylyl 99.1 4.1E-10 8.9E-15 96.3 8.8 107 70-178 103-217 (474)
245 COG0532 InfB Translation initi 99.1 4.1E-09 8.9E-14 88.8 13.5 148 30-186 8-170 (509)
246 COG2262 HflX GTPases [General 99.0 4.1E-09 8.8E-14 86.3 11.9 155 25-188 190-358 (411)
247 PRK00098 GTPase RsgA; Reviewed 99.0 4E-09 8.6E-14 85.2 11.8 87 94-183 77-164 (298)
248 KOG0705|consensus 99.0 3.5E-09 7.5E-14 89.2 11.4 168 14-191 20-194 (749)
249 COG0370 FeoB Fe2+ transport sy 99.0 1.7E-09 3.7E-14 93.6 9.9 154 26-187 2-165 (653)
250 PLN00043 elongation factor 1-a 99.0 1.1E-09 2.4E-14 93.0 8.3 106 67-176 78-203 (447)
251 PRK05506 bifunctional sulfate 99.0 1.3E-09 2.8E-14 96.5 9.1 103 72-176 102-211 (632)
252 smart00275 G_alpha G protein a 99.0 7.8E-09 1.7E-13 85.0 12.8 117 73-189 183-337 (342)
253 PLN03126 Elongation factor Tu; 99.0 1.7E-09 3.7E-14 92.4 9.1 146 24-174 78-250 (478)
254 PRK12289 GTPase RsgA; Reviewed 99.0 3.1E-09 6.7E-14 87.4 10.3 91 88-185 80-174 (352)
255 TIGR00503 prfC peptide chain r 99.0 1.7E-09 3.7E-14 93.5 8.9 117 24-143 8-146 (527)
256 TIGR00490 aEF-2 translation el 99.0 4.7E-10 1E-14 100.5 5.1 117 23-142 15-151 (720)
257 CHL00071 tufA elongation facto 99.0 3.5E-09 7.7E-14 89.2 10.1 145 25-174 10-181 (409)
258 PRK12740 elongation factor G; 99.0 4.5E-09 9.8E-14 93.8 11.2 74 64-142 52-125 (668)
259 cd01854 YjeQ_engC YjeQ/EngC. 99.0 2.8E-09 6E-14 85.7 8.9 87 93-183 74-161 (287)
260 TIGR03597 GTPase_YqeH ribosome 99.0 3.4E-09 7.4E-14 87.8 9.6 96 83-184 49-151 (360)
261 KOG1423|consensus 99.0 1E-08 2.2E-13 81.0 11.6 160 24-186 69-271 (379)
262 cd01886 EF-G Elongation factor 99.0 1.3E-09 2.9E-14 86.7 6.6 69 72-143 62-130 (270)
263 PF09439 SRPRB: Signal recogni 99.0 2.1E-10 4.6E-15 85.3 1.8 111 29-143 5-126 (181)
264 COG0218 Predicted GTPase [Gene 99.0 1.3E-08 2.7E-13 76.2 11.2 157 21-186 18-197 (200)
265 cd01859 MJ1464 MJ1464. This f 98.9 2.9E-09 6.4E-14 77.9 7.4 94 88-186 3-96 (156)
266 PRK00049 elongation factor Tu; 98.9 9.1E-09 2E-13 86.3 11.0 143 25-172 10-179 (396)
267 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 2.4E-08 5.2E-13 75.9 11.5 153 28-186 1-184 (196)
268 PRK12288 GTPase RsgA; Reviewed 98.9 1E-08 2.2E-13 84.3 10.0 88 95-184 118-206 (347)
269 PRK12739 elongation factor G; 98.9 2.4E-08 5.2E-13 89.4 13.0 113 25-142 6-138 (691)
270 TIGR00484 EF-G translation elo 98.9 8.4E-09 1.8E-13 92.3 9.8 140 25-171 8-171 (689)
271 PTZ00327 eukaryotic translatio 98.9 2.9E-08 6.2E-13 84.5 11.9 111 74-186 117-233 (460)
272 KOG3886|consensus 98.9 3.5E-09 7.6E-14 80.4 4.9 141 27-170 4-163 (295)
273 COG3596 Predicted GTPase [Gene 98.8 3.7E-09 8E-14 82.4 4.9 162 26-190 38-226 (296)
274 PLN03127 Elongation factor Tu; 98.8 2.7E-08 5.9E-13 84.5 10.5 157 24-185 58-251 (447)
275 PRK09866 hypothetical protein; 98.8 7.1E-08 1.5E-12 83.7 12.8 110 74-184 230-351 (741)
276 PTZ00141 elongation factor 1- 98.8 2.3E-08 4.9E-13 85.0 9.8 107 68-176 79-203 (446)
277 PRK13768 GTPase; Provisional 98.8 3.8E-08 8.2E-13 77.7 10.4 109 75-185 98-246 (253)
278 KOG3905|consensus 98.8 6.3E-08 1.4E-12 77.2 11.2 168 18-187 43-291 (473)
279 PRK09602 translation-associate 98.8 3E-08 6.6E-13 82.9 9.6 81 28-108 2-113 (396)
280 KOG1191|consensus 98.8 1.3E-08 2.8E-13 84.9 5.9 167 21-190 262-454 (531)
281 KOG1145|consensus 98.8 1.7E-07 3.7E-12 79.4 12.2 147 30-185 156-315 (683)
282 KOG1489|consensus 98.7 1.5E-07 3.2E-12 74.8 9.4 148 26-183 195-364 (366)
283 PF01926 MMR_HSR1: 50S ribosom 98.7 8.9E-08 1.9E-12 66.4 7.1 103 29-138 1-116 (116)
284 COG1084 Predicted GTPase [Gene 98.6 3.2E-07 6.9E-12 73.4 10.3 154 26-188 167-338 (346)
285 PF05783 DLIC: Dynein light in 98.6 5.2E-07 1.1E-11 76.8 11.2 164 23-189 21-267 (472)
286 COG1163 DRG Predicted GTPase [ 98.6 8.3E-07 1.8E-11 70.9 10.9 150 26-185 62-288 (365)
287 PRK00007 elongation factor G; 98.6 6.5E-07 1.4E-11 80.3 11.0 140 25-171 8-171 (693)
288 COG0536 Obg Predicted GTPase [ 98.5 5.5E-07 1.2E-11 72.4 9.1 155 28-189 160-336 (369)
289 cd01858 NGP_1 NGP-1. Autoanti 98.5 3.7E-07 8.1E-12 66.8 7.6 85 93-185 4-94 (157)
290 TIGR00991 3a0901s02IAP34 GTP-b 98.5 3.6E-07 7.7E-12 73.5 7.9 115 25-143 36-167 (313)
291 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 4.2E-07 9.1E-12 65.4 6.9 78 91-173 5-84 (141)
292 cd01856 YlqF YlqF. Proteins o 98.5 5.1E-07 1.1E-11 67.1 7.4 95 85-186 7-101 (171)
293 PRK13796 GTPase YqeH; Provisio 98.5 1.5E-06 3.3E-11 72.2 10.2 93 85-184 57-157 (365)
294 TIGR00101 ureG urease accessor 98.5 1.5E-06 3.3E-11 66.1 9.1 82 98-186 113-196 (199)
295 cd01849 YlqF_related_GTPase Yl 98.4 1.7E-06 3.8E-11 63.1 8.9 81 99-186 1-85 (155)
296 KOG0094|consensus 98.4 9.1E-08 2E-12 70.9 1.9 56 4-59 64-119 (221)
297 KOG1490|consensus 98.4 2.4E-06 5.1E-11 71.9 10.1 163 27-195 168-350 (620)
298 PRK07560 elongation factor EF- 98.4 9.8E-07 2.1E-11 79.6 8.2 116 24-142 17-152 (731)
299 cd01853 Toc34_like Toc34-like 98.4 1E-06 2.2E-11 69.4 6.9 119 19-142 23-162 (249)
300 COG1217 TypA Predicted membran 98.4 3.8E-06 8.2E-11 70.2 10.2 128 59-189 53-198 (603)
301 COG2895 CysN GTPases - Sulfate 98.4 2.6E-06 5.7E-11 68.8 9.0 123 47-175 61-192 (431)
302 TIGR03596 GTPase_YlqF ribosome 98.4 3E-06 6.6E-11 67.8 9.1 89 89-187 13-104 (276)
303 COG5256 TEF1 Translation elong 98.3 4.1E-06 9E-11 69.0 9.7 114 63-177 74-202 (428)
304 KOG1144|consensus 98.3 4.1E-06 9E-11 73.4 9.8 111 76-192 542-693 (1064)
305 PTZ00416 elongation factor 2; 98.3 8.7E-07 1.9E-11 80.9 6.1 67 73-142 91-157 (836)
306 PLN00116 translation elongatio 98.3 9.7E-07 2.1E-11 80.7 6.4 68 72-142 96-163 (843)
307 KOG4273|consensus 98.3 2.4E-06 5.2E-11 66.1 6.5 154 30-184 7-220 (418)
308 COG3276 SelB Selenocysteine-sp 98.3 9.6E-06 2.1E-10 67.4 10.3 146 33-186 11-162 (447)
309 TIGR00073 hypB hydrogenase acc 98.2 1.1E-05 2.3E-10 61.9 9.2 56 129-184 148-205 (207)
310 KOG0082|consensus 98.2 2.7E-05 6E-10 63.6 11.7 118 72-189 193-347 (354)
311 PRK01889 GTPase RsgA; Reviewed 98.2 6.9E-06 1.5E-10 68.1 8.3 83 95-182 110-193 (356)
312 PRK09563 rbgA GTPase YlqF; Rev 98.2 8.5E-06 1.8E-10 65.6 8.3 90 89-188 16-108 (287)
313 cd01882 BMS1 Bms1. Bms1 is an 98.2 8.4E-06 1.8E-10 63.3 7.9 136 26-172 38-182 (225)
314 PF04548 AIG1: AIG1 family; I 98.2 3.6E-06 7.8E-11 64.8 5.3 156 28-187 1-187 (212)
315 TIGR02836 spore_IV_A stage IV 98.1 2.6E-05 5.6E-10 65.0 10.1 157 23-183 13-234 (492)
316 KOG0084|consensus 98.1 7.2E-07 1.6E-11 66.3 0.5 60 2-61 49-108 (205)
317 PTZ00258 GTP-binding protein; 98.1 2.4E-05 5.3E-10 65.2 9.5 85 23-108 17-126 (390)
318 COG5257 GCD11 Translation init 98.1 2.5E-05 5.3E-10 62.6 9.0 110 75-189 87-205 (415)
319 PF03029 ATP_bind_1: Conserved 98.0 9.3E-06 2E-10 63.5 5.0 111 75-185 92-236 (238)
320 KOG0086|consensus 98.0 1.2E-06 2.5E-11 62.6 -0.2 54 5-58 52-105 (214)
321 TIGR00993 3a0901s04IAP86 chlor 98.0 3.7E-05 7.9E-10 67.5 8.4 122 18-143 109-250 (763)
322 PF00503 G-alpha: G-protein al 98.0 6.7E-05 1.5E-09 63.0 9.7 113 72-184 234-388 (389)
323 COG1162 Predicted GTPases [Gen 98.0 6.9E-05 1.5E-09 59.9 9.1 97 88-186 70-167 (301)
324 COG4108 PrfC Peptide chain rel 97.9 0.00015 3.2E-09 60.5 9.8 99 58-161 65-163 (528)
325 KOG0468|consensus 97.9 4.8E-05 1E-09 66.2 7.2 69 70-141 193-261 (971)
326 KOG0088|consensus 97.8 1.1E-05 2.5E-10 57.9 2.2 56 4-59 55-110 (218)
327 PF00735 Septin: Septin; Inte 97.8 8.6E-05 1.9E-09 59.5 7.4 112 27-141 4-154 (281)
328 PRK09435 membrane ATPase/prote 97.8 0.00025 5.5E-09 58.0 9.9 104 73-186 148-260 (332)
329 KOG0092|consensus 97.8 2.6E-05 5.6E-10 57.9 3.4 54 5-58 48-101 (200)
330 KOG0458|consensus 97.7 7.8E-05 1.7E-09 63.9 6.6 117 59-177 240-373 (603)
331 KOG0461|consensus 97.7 0.00041 8.8E-09 56.4 10.0 162 25-190 5-197 (522)
332 KOG0091|consensus 97.7 7E-06 1.5E-10 59.4 -0.2 54 6-59 53-106 (213)
333 TIGR00750 lao LAO/AO transport 97.7 0.00015 3.2E-09 58.8 7.3 103 73-185 126-237 (300)
334 smart00053 DYNc Dynamin, GTPas 97.7 0.00015 3.3E-09 56.7 6.9 68 74-143 125-206 (240)
335 KOG3887|consensus 97.6 0.00028 6.1E-09 54.6 7.6 117 71-189 72-205 (347)
336 PF05049 IIGP: Interferon-indu 97.6 8.5E-05 1.9E-09 61.5 5.0 160 25-191 33-223 (376)
337 KOG0080|consensus 97.6 2E-05 4.4E-10 56.9 1.0 60 4-63 53-112 (209)
338 KOG0079|consensus 97.6 2E-05 4.4E-10 56.1 0.8 54 5-58 51-104 (198)
339 PRK09601 GTP-binding protein Y 97.6 0.001 2.2E-08 55.1 10.7 79 28-108 3-107 (364)
340 COG5019 CDC3 Septin family pro 97.6 0.00022 4.8E-09 58.2 6.3 114 25-141 21-174 (373)
341 KOG0394|consensus 97.6 5.9E-05 1.3E-09 55.7 2.7 49 4-52 51-99 (210)
342 COG0480 FusA Translation elong 97.5 0.00026 5.7E-09 63.2 6.8 115 24-141 7-140 (697)
343 KOG0087|consensus 97.5 5.5E-05 1.2E-09 57.0 1.5 54 4-57 56-109 (222)
344 PF06858 NOG1: Nucleolar GTP-b 97.4 0.00064 1.4E-08 40.5 5.7 45 96-140 12-58 (58)
345 KOG1532|consensus 97.4 0.0016 3.4E-08 51.5 9.5 113 73-186 115-264 (366)
346 KOG0093|consensus 97.4 7.1E-05 1.5E-09 53.3 1.8 53 6-58 65-117 (193)
347 KOG0098|consensus 97.4 5.2E-05 1.1E-09 56.1 0.5 56 4-59 48-103 (216)
348 KOG1547|consensus 97.4 0.00081 1.8E-08 52.0 6.9 141 27-171 46-228 (336)
349 cd01900 YchF YchF subfamily. 97.3 0.0017 3.6E-08 51.9 8.8 79 30-108 1-103 (274)
350 KOG0095|consensus 97.3 9.3E-05 2E-09 52.8 1.1 55 5-59 50-104 (213)
351 KOG0078|consensus 97.3 5.6E-05 1.2E-09 56.9 -0.3 54 5-58 55-108 (207)
352 KOG2655|consensus 97.2 0.00089 1.9E-08 55.0 6.2 142 27-171 21-202 (366)
353 KOG0099|consensus 97.1 0.0038 8.3E-08 49.0 8.1 117 72-188 200-371 (379)
354 KOG1486|consensus 97.0 0.011 2.4E-07 46.2 9.9 151 26-186 61-288 (364)
355 KOG0081|consensus 97.0 9.1E-05 2E-09 53.4 -1.5 52 7-58 63-114 (219)
356 KOG0097|consensus 96.9 0.00024 5.3E-09 50.2 0.2 51 6-56 55-105 (215)
357 cd03110 Fer4_NifH_child This p 96.9 0.015 3.2E-07 43.2 9.6 85 72-164 91-175 (179)
358 KOG0083|consensus 96.9 0.0006 1.3E-08 47.8 1.8 51 6-56 42-92 (192)
359 cd01857 HSR1_MMR1 HSR1/MMR1. 96.8 0.00052 1.1E-08 49.2 1.2 52 29-84 85-138 (141)
360 cd01859 MJ1464 MJ1464. This f 96.7 0.00048 1E-08 50.1 0.7 54 26-83 100-155 (156)
361 KOG0467|consensus 96.7 0.004 8.8E-08 55.3 6.3 79 55-140 53-135 (887)
362 COG0378 HypB Ni2+-binding GTPa 96.7 0.0047 1E-07 46.4 5.4 54 132-185 145-200 (202)
363 KOG0410|consensus 96.6 0.00079 1.7E-08 54.3 1.3 142 29-188 180-343 (410)
364 COG5258 GTPBP1 GTPase [General 96.6 0.027 5.9E-07 46.7 10.0 106 76-185 203-337 (527)
365 KOG1143|consensus 96.6 0.067 1.5E-06 44.3 12.2 100 75-177 250-379 (591)
366 PF00350 Dynamin_N: Dynamin fa 96.6 0.007 1.5E-07 44.3 6.2 63 75-139 102-168 (168)
367 KOG0466|consensus 96.6 0.0019 4.2E-08 51.7 3.2 111 75-190 126-245 (466)
368 PRK10463 hydrogenase nickel in 96.6 0.0053 1.1E-07 49.3 5.6 56 129-184 230-287 (290)
369 COG0050 TufB GTPases - transla 96.6 0.014 2.9E-07 46.8 7.5 110 59-170 60-177 (394)
370 KOG0393|consensus 96.5 0.0019 4E-08 48.8 2.7 49 3-51 44-93 (198)
371 KOG0465|consensus 96.5 0.029 6.4E-07 49.0 9.8 66 73-141 103-168 (721)
372 cd01856 YlqF YlqF. Proteins o 96.3 0.0015 3.2E-08 48.4 0.8 55 26-84 114-170 (171)
373 TIGR03348 VI_IcmF type VI secr 96.3 0.022 4.7E-07 54.5 8.6 116 23-142 106-256 (1169)
374 cd04178 Nucleostemin_like Nucl 96.1 0.019 4E-07 42.7 6.0 43 99-142 1-43 (172)
375 cd04133 Rop_like Rop subfamily 96.1 0.0046 1E-07 46.1 2.6 49 5-53 43-91 (176)
376 KOG0464|consensus 95.9 0.0028 6.2E-08 52.8 1.0 80 59-141 87-166 (753)
377 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 95.8 0.005 1.1E-07 46.2 1.8 48 5-52 47-94 (182)
378 COG1161 Predicted GTPases [Gen 95.8 0.032 6.9E-07 45.7 6.5 92 82-179 18-110 (322)
379 KOG4252|consensus 95.8 0.00029 6.3E-09 51.9 -4.9 46 8-53 66-111 (246)
380 PF11111 CENP-M: Centromere pr 95.8 0.18 3.9E-06 37.3 9.6 88 97-184 64-151 (176)
381 cd04131 Rnd Rnd subfamily. Th 95.6 0.0088 1.9E-07 44.6 2.5 48 5-52 43-90 (178)
382 KOG0085|consensus 95.5 0.025 5.5E-07 43.8 4.6 124 66-189 191-352 (359)
383 cd01875 RhoG RhoG subfamily. 95.5 0.0065 1.4E-07 45.7 1.5 48 6-53 46-93 (191)
384 COG0012 Predicted GTPase, prob 95.5 0.11 2.3E-06 43.1 8.5 82 27-108 2-108 (372)
385 cd04120 Rab12 Rab12 subfamily. 95.4 0.0054 1.2E-07 46.8 0.6 48 5-52 43-90 (202)
386 KOG1424|consensus 95.3 0.084 1.8E-06 45.3 7.4 69 94-170 171-244 (562)
387 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 95.0 0.011 2.3E-07 46.2 1.2 48 5-52 55-102 (232)
388 KOG2486|consensus 94.9 0.014 3E-07 46.3 1.6 151 25-183 134-313 (320)
389 PTZ00099 rab6; Provisional 94.8 0.015 3.2E-07 43.4 1.5 49 5-53 23-71 (176)
390 COG5192 BMS1 GTP-binding prote 94.7 0.12 2.6E-06 45.1 6.8 136 26-171 68-211 (1077)
391 cd02038 FleN-like FleN is a me 94.6 0.15 3.4E-06 36.2 6.4 65 74-141 45-109 (139)
392 cd04121 Rab40 Rab40 subfamily. 94.6 0.013 2.8E-07 44.2 0.7 49 5-53 49-97 (189)
393 COG1703 ArgK Putative periplas 94.5 0.26 5.6E-06 39.7 7.9 105 74-188 144-256 (323)
394 KOG1954|consensus 94.5 0.11 2.5E-06 43.0 5.9 66 75-142 148-224 (532)
395 cd01871 Rac1_like Rac1-like su 94.4 0.027 5.8E-07 41.7 2.0 48 5-52 43-90 (174)
396 COG3640 CooC CO dehydrogenase 94.3 0.42 9.2E-06 37.2 8.3 76 75-161 135-211 (255)
397 KOG3859|consensus 94.3 0.095 2.1E-06 41.8 4.9 57 27-83 42-104 (406)
398 PF03308 ArgK: ArgK protein; 94.3 0.043 9.2E-07 43.3 2.9 83 95-185 140-229 (266)
399 KOG0469|consensus 94.2 0.067 1.5E-06 46.0 4.2 69 70-141 94-162 (842)
400 cd01874 Cdc42 Cdc42 subfamily. 94.1 0.037 8.1E-07 41.0 2.3 47 6-52 44-90 (175)
401 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 93.8 0.027 5.8E-07 43.7 1.1 48 5-52 43-90 (222)
402 cd04102 RabL3 RabL3 (Rab-like3 93.7 0.019 4.1E-07 43.8 0.1 49 8-56 51-99 (202)
403 smart00176 RAN Ran (Ras-relate 93.6 0.029 6.2E-07 42.8 0.9 47 5-51 38-84 (200)
404 COG1149 MinD superfamily P-loo 93.4 1.1 2.5E-05 35.6 9.4 80 74-164 164-243 (284)
405 KOG2484|consensus 93.3 0.3 6.6E-06 40.8 6.3 75 77-159 126-202 (435)
406 KOG0460|consensus 93.2 0.53 1.2E-05 38.7 7.5 109 59-169 102-218 (449)
407 PF09547 Spore_IV_A: Stage IV 93.0 2.5 5.5E-05 36.0 11.3 69 110-182 162-233 (492)
408 TIGR03596 GTPase_YlqF ribosome 92.9 0.046 1E-06 43.8 1.1 55 26-84 117-173 (276)
409 cd01851 GBP Guanylate-binding 92.8 0.11 2.3E-06 40.4 3.0 85 27-112 7-106 (224)
410 cd01858 NGP_1 NGP-1. Autoanti 92.7 0.058 1.3E-06 39.2 1.3 54 26-83 101-156 (157)
411 PHA02518 ParA-like protein; Pr 92.7 0.91 2E-05 34.3 8.0 67 72-141 75-145 (211)
412 cd04128 Spg1 Spg1p. Spg1p (se 92.7 0.058 1.3E-06 40.3 1.3 47 6-52 44-90 (182)
413 cd01855 YqeH YqeH. YqeH is an 92.6 0.032 6.9E-07 41.9 -0.2 53 28-83 128-189 (190)
414 KOG0448|consensus 92.6 0.9 2E-05 40.6 8.6 92 76-170 208-310 (749)
415 cd04178 Nucleostemin_like Nucl 92.6 0.049 1.1E-06 40.5 0.8 55 25-83 115-171 (172)
416 cd04134 Rho3 Rho3 subfamily. 92.5 0.12 2.7E-06 38.6 2.9 46 6-51 43-88 (189)
417 PLN00023 GTP-binding protein; 92.5 0.062 1.4E-06 44.0 1.3 44 8-51 80-123 (334)
418 cd04130 Wrch_1 Wrch-1 subfamil 92.3 0.12 2.7E-06 37.9 2.7 46 5-50 42-87 (173)
419 KOG1673|consensus 92.3 0.18 3.9E-06 36.7 3.3 111 6-118 64-179 (205)
420 PRK09563 rbgA GTPase YlqF; Rev 92.2 0.068 1.5E-06 43.1 1.3 56 26-85 120-177 (287)
421 cd01873 RhoBTB RhoBTB subfamil 92.2 0.13 2.8E-06 38.9 2.7 46 5-52 60-105 (195)
422 cd02036 MinD Bacterial cell di 92.2 2.4 5.2E-05 31.0 9.5 84 75-164 64-147 (179)
423 cd02042 ParA ParA and ParB of 92.1 0.12 2.6E-06 34.5 2.2 45 74-121 40-84 (104)
424 cd04136 Rap_like Rap-like subf 91.8 0.075 1.6E-06 38.3 1.0 38 6-43 44-81 (163)
425 PLN03071 GTP-binding nuclear p 91.5 0.11 2.4E-06 40.0 1.7 46 6-51 57-102 (219)
426 PF09419 PGP_phosphatase: Mito 91.4 4.3 9.3E-05 30.0 9.9 85 95-181 36-127 (168)
427 cd04141 Rit_Rin_Ric Rit/Rin/Ri 91.4 0.097 2.1E-06 38.6 1.2 48 5-52 44-91 (172)
428 cd04176 Rap2 Rap2 subgroup. T 91.3 0.083 1.8E-06 38.2 0.8 39 6-44 44-82 (163)
429 cd04175 Rap1 Rap1 subgroup. T 91.3 0.062 1.4E-06 38.9 0.1 38 6-43 44-81 (164)
430 smart00174 RHO Rho (Ras homolo 91.2 0.16 3.5E-06 37.1 2.3 39 6-44 41-79 (174)
431 cd04117 Rab15 Rab15 subfamily. 90.9 0.1 2.2E-06 37.9 1.0 46 6-51 44-89 (161)
432 PRK13695 putative NTPase; Prov 90.8 1.5 3.4E-05 32.2 7.3 47 129-185 126-172 (174)
433 PTZ00369 Ras-like protein; Pro 90.7 0.1 2.2E-06 39.0 0.8 45 6-50 48-92 (189)
434 cd04122 Rab14 Rab14 subfamily. 90.6 0.089 1.9E-06 38.3 0.4 40 5-44 45-84 (166)
435 cd04132 Rho4_like Rho4-like su 90.6 0.12 2.7E-06 38.3 1.1 43 8-50 46-88 (187)
436 cd04107 Rab32_Rab38 Rab38/Rab3 90.5 0.11 2.3E-06 39.3 0.8 45 8-52 47-91 (201)
437 cd04144 Ras2 Ras2 subfamily. 90.5 0.082 1.8E-06 39.6 0.1 39 6-44 42-80 (190)
438 cd04116 Rab9 Rab9 subfamily. 90.5 0.13 2.7E-06 37.6 1.1 38 6-43 49-86 (170)
439 PF14331 ImcF-related_N: ImcF- 90.1 3.8 8.2E-05 32.7 9.3 93 96-191 24-136 (266)
440 KOG4423|consensus 89.7 0.074 1.6E-06 39.8 -0.6 51 8-58 72-122 (229)
441 PRK13505 formate--tetrahydrofo 89.7 2.7 5.9E-05 36.9 8.6 71 112-186 357-429 (557)
442 KOG2423|consensus 89.7 1.6 3.5E-05 36.8 6.9 83 95-179 211-293 (572)
443 TIGR00064 ftsY signal recognit 89.6 4 8.8E-05 32.6 9.1 97 73-180 154-262 (272)
444 cd04124 RabL2 RabL2 subfamily. 89.6 0.18 3.8E-06 36.6 1.3 37 6-42 44-80 (161)
445 KOG0459|consensus 89.5 0.95 2E-05 38.1 5.5 106 74-179 157-279 (501)
446 cd04135 Tc10 TC10 subfamily. 89.3 0.36 7.7E-06 35.2 2.8 38 5-42 42-79 (174)
447 cd04127 Rab27A Rab27a subfamil 89.2 0.14 3E-06 37.7 0.4 36 8-43 60-95 (180)
448 cd00877 Ran Ran (Ras-related n 89.0 0.26 5.6E-06 36.0 1.8 39 6-44 44-82 (166)
449 PLN03110 Rab GTPase; Provision 88.9 0.13 2.7E-06 39.6 0.1 45 6-50 56-100 (216)
450 cd04108 Rab36_Rab34 Rab34/Rab3 88.6 0.16 3.4E-06 37.4 0.4 38 6-43 44-81 (170)
451 cd04143 Rhes_like Rhes_like su 88.5 0.2 4.3E-06 39.5 0.9 47 5-51 42-88 (247)
452 cd04138 H_N_K_Ras_like H-Ras/N 88.4 0.4 8.6E-06 34.2 2.4 38 6-43 44-81 (162)
453 cd01870 RhoA_like RhoA-like su 88.3 0.44 9.4E-06 34.8 2.6 35 6-40 44-78 (175)
454 cd04118 Rab24 Rab24 subfamily. 88.3 0.31 6.8E-06 36.3 1.9 39 5-43 44-82 (193)
455 KOG3929|consensus 88.1 0.45 9.8E-06 37.6 2.6 85 25-113 43-135 (363)
456 COG1618 Predicted nucleotide k 87.9 9.1 0.0002 28.3 10.0 144 26-185 4-175 (179)
457 TIGR03371 cellulose_yhjQ cellu 87.7 6.1 0.00013 30.6 8.9 64 75-141 116-180 (246)
458 cd04112 Rab26 Rab26 subfamily. 87.7 0.24 5.3E-06 37.0 0.9 38 6-43 45-82 (191)
459 cd04125 RabA_like RabA-like su 87.6 0.24 5.3E-06 36.8 0.9 47 5-51 43-89 (188)
460 cd04106 Rab23_lke Rab23-like s 87.2 0.21 4.5E-06 35.9 0.3 35 8-42 48-82 (162)
461 cd01865 Rab3 Rab3 subfamily. 87.1 0.24 5.2E-06 36.0 0.6 37 7-43 46-82 (165)
462 cd04119 RJL RJL (RabJ-Like) su 87.1 0.18 3.9E-06 36.3 -0.1 38 6-43 44-81 (168)
463 cd02117 NifH_like This family 87.0 7.5 0.00016 29.6 8.9 88 72-164 115-206 (212)
464 cd04145 M_R_Ras_like M-Ras/R-R 86.9 0.23 5E-06 35.7 0.4 38 6-43 45-82 (164)
465 COG1100 GTPase SAR1 and relate 86.8 0.28 6E-06 37.4 0.8 34 10-43 53-86 (219)
466 cd03111 CpaE_like This protein 86.5 5.1 0.00011 26.9 6.9 61 75-138 44-106 (106)
467 PRK10416 signal recognition pa 86.5 6.7 0.00014 32.2 8.7 97 72-179 195-303 (318)
468 KOG0447|consensus 86.1 7.5 0.00016 34.4 9.0 80 75-157 413-507 (980)
469 cd04177 RSR1 RSR1 subgroup. R 85.9 0.65 1.4E-05 33.7 2.4 35 6-40 44-78 (168)
470 cd01849 YlqF_related_GTPase Yl 85.8 0.32 7E-06 35.2 0.7 54 25-83 98-154 (155)
471 COG4963 CpaE Flp pilus assembl 85.7 9.3 0.0002 31.9 9.1 66 73-141 217-283 (366)
472 COG3523 IcmF Type VI protein s 85.6 4.9 0.00011 38.7 8.3 109 30-143 128-270 (1188)
473 cd04111 Rab39 Rab39 subfamily. 85.2 0.35 7.6E-06 37.0 0.7 45 7-51 48-92 (211)
474 cd04140 ARHI_like ARHI subfami 85.1 0.38 8.3E-06 34.9 0.8 36 7-42 45-80 (165)
475 cd04110 Rab35 Rab35 subfamily. 84.7 0.4 8.6E-06 36.2 0.8 37 7-43 51-87 (199)
476 smart00173 RAS Ras subfamily o 84.7 0.31 6.8E-06 35.1 0.2 38 6-43 43-80 (164)
477 PRK14974 cell division protein 84.6 7.8 0.00017 32.1 8.3 96 74-180 223-324 (336)
478 TIGR00092 GTP-binding protein 84.5 1.1 2.3E-05 37.5 3.2 80 28-108 3-108 (368)
479 TIGR01968 minD_bact septum sit 84.5 6.6 0.00014 30.6 7.7 65 73-141 111-175 (261)
480 cd04150 Arf1_5_like Arf1-Arf5- 84.4 0.24 5.1E-06 35.9 -0.6 36 8-43 41-76 (159)
481 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 84.3 0.37 8E-06 34.9 0.4 38 6-43 46-83 (166)
482 cd04126 Rab20 Rab20 subfamily. 84.2 0.39 8.6E-06 37.1 0.6 44 9-52 42-85 (220)
483 COG4615 PvdE ABC-type sideroph 84.1 0.22 4.8E-06 41.9 -0.9 82 29-125 351-433 (546)
484 PRK13185 chlL protochlorophyll 84.1 12 0.00025 29.6 9.0 83 73-164 117-202 (270)
485 PLN03118 Rab family protein; P 83.8 0.37 8E-06 36.7 0.2 38 6-43 57-94 (211)
486 CHL00175 minD septum-site dete 83.7 7.8 0.00017 30.9 7.9 65 73-141 126-190 (281)
487 cd01861 Rab6 Rab6 subfamily. 83.6 1.1 2.4E-05 32.0 2.7 32 7-38 45-76 (161)
488 cd01860 Rab5_related Rab5-rela 83.6 0.39 8.5E-06 34.5 0.3 37 5-41 44-80 (163)
489 KOG0096|consensus 83.4 1.7 3.7E-05 32.7 3.6 35 9-43 57-91 (216)
490 cd02037 MRP-like MRP (Multiple 83.0 13 0.00029 27.0 8.3 88 72-163 66-161 (169)
491 cd01868 Rab11_like Rab11-like. 82.5 0.43 9.3E-06 34.5 0.1 35 5-39 46-80 (165)
492 cd01867 Rab8_Rab10_Rab13_like 82.4 0.47 1E-05 34.5 0.3 38 6-43 47-84 (167)
493 cd01983 Fer4_NifH The Fer4_Nif 82.2 1.6 3.4E-05 28.0 2.8 73 30-116 2-76 (99)
494 CHL00072 chlL photochlorophyll 82.1 23 0.0005 28.5 10.0 113 73-188 115-246 (290)
495 cd04109 Rab28 Rab28 subfamily. 82.1 0.52 1.1E-05 36.0 0.5 43 9-51 48-90 (215)
496 cd01864 Rab19 Rab19 subfamily. 82.0 0.54 1.2E-05 34.0 0.5 37 6-42 47-83 (165)
497 cd04149 Arf6 Arf6 subfamily. 81.9 0.46 9.9E-06 34.8 0.1 35 9-43 51-85 (168)
498 PLN00223 ADP-ribosylation fact 81.9 0.35 7.6E-06 36.0 -0.5 36 9-44 59-94 (181)
499 cd04152 Arl4_Arl7 Arl4/Arl7 su 81.8 0.73 1.6E-05 34.2 1.2 37 7-43 48-84 (183)
500 cd01866 Rab2 Rab2 subfamily. 81.7 0.53 1.1E-05 34.3 0.4 35 6-40 48-82 (168)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.8e-47 Score=278.96 Aligned_cols=175 Identities=29% Similarity=0.488 Sum_probs=166.3
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
.+.|+++|||+++|++|||| ++.||..+.|.+.|..|+|+|+..+.+.++|+.++++||||+||++|+++...||++|
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 35689999999999999999 5799999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe-EEEEecCCCCCHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCR-LMRTSVKEDINVNS 176 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~ 176 (208)
|++|+|||+++.+||+++..|+.++.++.. +.|.++||||+|+.++++++.++++.++.+++++ ++|+|||++.||++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 999999999999999999999999999998 7899999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q psy2518 177 IFRYLTTKCLSELRQQEEE 195 (208)
Q Consensus 177 ~f~~i~~~~~~~~~~~~~~ 195 (208)
.|..++..+..+.......
T Consensus 163 ~F~~la~~lk~~~~~~~~~ 181 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLHVKW 181 (205)
T ss_pred HHHHHHHHHHHhcccCCCC
Confidence 9999999998876654443
No 2
>KOG0078|consensus
Probab=100.00 E-value=5.2e-45 Score=269.69 Aligned_cols=170 Identities=29% Similarity=0.545 Sum_probs=164.5
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
+.|++++|++++|+++||| ++.+|..+.|...+..|+|+||..+++.++|..+.+++|||+||++|+.+.+.||++|+
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 4799999999999999999 57899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518 100 ACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 178 (208)
++++|||+++..||+++..|+..+.++.+ ..|+++||||+|+.++|+|+.+.++++|.++|+.|+|+|||+|.||++.|
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence 99999999999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy2518 179 RYLTTKCLSELRQ 191 (208)
Q Consensus 179 ~~i~~~~~~~~~~ 191 (208)
..+++.++.+...
T Consensus 167 ~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 167 LSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHhhcch
Confidence 9999999976544
No 3
>KOG0098|consensus
Probab=100.00 E-value=2.2e-44 Score=260.12 Aligned_cols=171 Identities=25% Similarity=0.444 Sum_probs=164.0
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
|...+|++++|+.|||| +++||..+.|.+.+..|+|+++..+.+++++++++++||||+|++.|++..+.||++|.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 67899999999999999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhc-CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
|+|||+++++||+.+..|+.++.++. ++..++++|||+||...|.|+.+|+++||+++|+.++|+||++++||+|+|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999996 49999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhh
Q psy2518 181 LTTKCLSELRQQEE 194 (208)
Q Consensus 181 i~~~~~~~~~~~~~ 194 (208)
....+....+....
T Consensus 163 ta~~Iy~~~q~g~~ 176 (216)
T KOG0098|consen 163 TAKEIYRKIQDGVF 176 (216)
T ss_pred HHHHHHHHHHhccc
Confidence 99999988766544
No 4
>KOG0094|consensus
Probab=100.00 E-value=5.9e-43 Score=254.64 Aligned_cols=166 Identities=30% Similarity=0.423 Sum_probs=157.6
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
..+.+|++++|+.+||| ++.||+.+.|...|.+|||+||..+++.+.+.++.|++|||+|||+|+++.+.|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 34569999999999999 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
++|||+++..||++..+|++.+.+..+ +.-+++||||.||.++|+++.++++..|++++..|+|+||+.|.||.++|.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 999999999999999999999998887 477789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q psy2518 180 YLTTKCLSEL 189 (208)
Q Consensus 180 ~i~~~~~~~~ 189 (208)
.|+..++...
T Consensus 179 rIaa~l~~~~ 188 (221)
T KOG0094|consen 179 RIAAALPGME 188 (221)
T ss_pred HHHHhccCcc
Confidence 9988887653
No 5
>KOG0092|consensus
Probab=100.00 E-value=1.9e-42 Score=251.81 Aligned_cols=166 Identities=28% Similarity=0.435 Sum_probs=158.1
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+|++++|++++|| +..||..+.|.+...||+|..|..+++.+++..++++||||+|+|+|.++.+.||++|+++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 579999999999999 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
|||+++.+||..++.|+.++.+..+ ++-+.+||||+||.+.|+|..++++.+|...|..|||+|||+|.||+++|..|+
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia 163 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA 163 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence 9999999999999999999998887 677788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh
Q psy2518 183 TKCLSELRQ 191 (208)
Q Consensus 183 ~~~~~~~~~ 191 (208)
+.++....+
T Consensus 164 ~~lp~~~~~ 172 (200)
T KOG0092|consen 164 EKLPCSDPQ 172 (200)
T ss_pred HhccCcccc
Confidence 999876544
No 6
>KOG0087|consensus
Probab=100.00 E-value=5.3e-42 Score=252.75 Aligned_cols=173 Identities=28% Similarity=0.463 Sum_probs=165.9
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
.++|+++|||+++|+++||| ++.||..+.|..+..+|+|+++..+.+.++++.++.+||||+||++|+.....||++|
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 46899999999999999999 6889999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
.++++|||++.+.+|+++..|+.++..+.+ ++++++||||+||.+.|.|+.++++.+|+..+..++|+||.++.||++.
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 999999999999999999999999999997 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy2518 178 FRYLTTKCLSELRQQE 193 (208)
Q Consensus 178 f~~i~~~~~~~~~~~~ 193 (208)
|..++..+.....++.
T Consensus 168 F~~~l~~I~~~vs~k~ 183 (222)
T KOG0087|consen 168 FERVLTEIYKIVSKKQ 183 (222)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988765543
No 7
>KOG0080|consensus
Probab=100.00 E-value=2.3e-42 Score=244.00 Aligned_cols=170 Identities=28% Similarity=0.467 Sum_probs=161.7
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
+.|..++||+++|++|+|| ++++|..+.|++..+.|+|+||..+.+.++|..+++-||||+|||+|+.+.+.||++|.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 5688899999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 100 ACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
++|+|||++.+++|.++..|+.++..++. ++-.++||||.|.+.+|.|+.+++..+|+++++-|+|||||+..||+..
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 99999999999999999999999998887 6777999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy2518 178 FRYLTTKCLSELRQ 191 (208)
Q Consensus 178 f~~i~~~~~~~~~~ 191 (208)
|++++.++++.+.-
T Consensus 166 FeelveKIi~tp~l 179 (209)
T KOG0080|consen 166 FEELVEKIIETPSL 179 (209)
T ss_pred HHHHHHHHhcCcch
Confidence 99999999876543
No 8
>KOG0079|consensus
Probab=100.00 E-value=1.6e-42 Score=241.69 Aligned_cols=168 Identities=30% Similarity=0.558 Sum_probs=161.9
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
..|++++|.+++|++|+|| ++.+|-.+.|...|..|+|+|+..+++.++|..++++||||+|+|+|+.+...||++.+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 3588999999999999999 57888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 100 ACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
++++|||+++.+||.++++|++++.+.++..|-++||||.|..+.+.|..++++.+|..+|+++||+|||++.|++..|.
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q psy2518 180 YLTTKCLSEL 189 (208)
Q Consensus 180 ~i~~~~~~~~ 189 (208)
-|.++++...
T Consensus 163 cit~qvl~~k 172 (198)
T KOG0079|consen 163 CITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHH
Confidence 9999887665
No 9
>KOG0093|consensus
Probab=100.00 E-value=2.7e-41 Score=235.20 Aligned_cols=170 Identities=28% Similarity=0.473 Sum_probs=162.6
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.|+.++|+.++|++++|| ++.++..++|...+..|+|+++..|++--..+.++++||||+|+|+|+.+...+|++|++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg 96 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG 96 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence 589999999999999999 578899999999999999999999988778899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
+|+|||++|.+||+.+..|..+++.++- ++|+|++|||||+.++|.++.+.++.++.++|+.|||+|||.+.||+++|+
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFE 176 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHH
Confidence 9999999999999999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy2518 180 YLTTKCLSELRQQ 192 (208)
Q Consensus 180 ~i~~~~~~~~~~~ 192 (208)
.++..+++++.+.
T Consensus 177 ~lv~~Ic~kmses 189 (193)
T KOG0093|consen 177 RLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999877654
No 10
>KOG0095|consensus
Probab=100.00 E-value=5.2e-40 Score=229.59 Aligned_cols=173 Identities=29% Similarity=0.472 Sum_probs=163.2
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
+|+|..+|||+++|..|+|| +.++|.++-|++-...|+|++|..+++.++|++++++||||+|+++|+++...||+.|
T Consensus 1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence 57899999999999999999 5689999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
+++++|||++-..||+.+.+|+.++.++.. ..-.|+||||.|+.+.|+++...++++++...+-|.|+||++..||+.+
T Consensus 81 halilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 81 HALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred ceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence 999999999999999999999999999988 5667999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy2518 178 FRYLTTKCLSELRQQE 193 (208)
Q Consensus 178 f~~i~~~~~~~~~~~~ 193 (208)
|..++-.+....+...
T Consensus 161 f~~~a~rli~~ar~~d 176 (213)
T KOG0095|consen 161 FLDLACRLISEARQND 176 (213)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999998887765543
No 11
>KOG0086|consensus
Probab=100.00 E-value=2.9e-40 Score=231.68 Aligned_cols=174 Identities=27% Similarity=0.408 Sum_probs=165.0
Q ss_pred CccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518 20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG 97 (208)
Q Consensus 20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 97 (208)
-+|.|++++|++++|++|.|| ++.+|..++|.+....|+|++|..+.+.+.++.++++||||+||++|++..+.||++
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 368899999999999999999 578899999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 98 AQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
|.+.++|||+++++||+.+..|+.......+ ++-++++|||.||.++|+|+..++-.+|.+..+-+.|+||++|+||+|
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 9999999999999999999999999988877 888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy2518 177 IFRYLTTKCLSELRQQE 193 (208)
Q Consensus 177 ~f~~i~~~~~~~~~~~~ 193 (208)
.|-..++.++.+.+..+
T Consensus 162 aFl~c~~tIl~kIE~GE 178 (214)
T KOG0086|consen 162 AFLKCARTILNKIESGE 178 (214)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999998765443
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.5e-39 Score=243.70 Aligned_cols=168 Identities=26% Similarity=0.429 Sum_probs=157.3
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.|...+||+++|+.++|| ++.++..+.|.+++.+|++.++..+.+.+++..+.+++|||+|+++|..++..+++++|+
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 367789999999999999 578888899999999999999988889999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
+++|||++++.||+++..|+.++.+..++.|++|||||+||.+.+.++.++++.+++..+++|+||||++|.||+++|++
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999999887779999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy2518 181 LTTKCLSELR 190 (208)
Q Consensus 181 i~~~~~~~~~ 190 (208)
+++.+..+..
T Consensus 162 l~~~i~~~~~ 171 (189)
T cd04121 162 LARIVLMRHG 171 (189)
T ss_pred HHHHHHHhcC
Confidence 9998876544
No 13
>KOG0394|consensus
Probab=100.00 E-value=5.1e-40 Score=237.10 Aligned_cols=166 Identities=25% Similarity=0.430 Sum_probs=155.8
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
+..+||+++|++|+|| +.+++..+.|...|..|||.||..|.+.+++..+.++||||+|+++|.++.-.+|++||+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 5689999999999999 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-----CCCEEEEEeCCCCCC--CCCCCHHHHHHHHHHhC-CeEEEEecCCCCCH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG-----EIPTVLVQNKIDLLD--QSVVAPEEADLLSRALG-CRLMRTSVKEDINV 174 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~piivvgnK~Dl~~--~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i 174 (208)
+|||++++.||+++..|..++..... ..|+||+|||.|+.+ +|+|+.+.+++||+..| ++|||+|||.+.||
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 99999999999999999999877664 689999999999965 38999999999999986 59999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy2518 175 NSIFRYLTTKCLSELR 190 (208)
Q Consensus 175 ~~~f~~i~~~~~~~~~ 190 (208)
.+.|..+++.++....
T Consensus 167 ~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 167 DEAFEEIARRALANED 182 (210)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999887654
No 14
>KOG0081|consensus
Probab=100.00 E-value=4.7e-39 Score=226.91 Aligned_cols=177 Identities=25% Similarity=0.386 Sum_probs=163.4
Q ss_pred CccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC---------CeEEEEEEEeCCChhhhc
Q psy2518 20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE---------GEEVRLMLWDTAGQEEFD 88 (208)
Q Consensus 20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~---------~~~~~l~i~Dt~g~~~~~ 88 (208)
|..+|++++|.+.+|+||+|| ++.++..+.|......|+|+||..|.+-++ +..+.+++|||+|+|+|+
T Consensus 2 ~~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFR 81 (219)
T KOG0081|consen 2 GDGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFR 81 (219)
T ss_pred CCccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHH
Confidence 567899999999999999999 578899999999999999999999988773 367999999999999999
Q ss_pred chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518 89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166 (208)
Q Consensus 89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 166 (208)
++...++++|-+++++||+++..||-++..|+.++..+.- ++-++++|||+||++.|+|+++++.++|.++++||||+
T Consensus 82 SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 82 SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred HHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence 9999999999999999999999999999999999877654 88899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhhhhhhhh
Q psy2518 167 SVKEDINVNSIFRYLTTKCLSELRQQEEEY 196 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~ 196 (208)
||-+|.||++..+.++..+.++.++-..++
T Consensus 162 SA~tg~Nv~kave~LldlvM~Rie~~v~~s 191 (219)
T KOG0081|consen 162 SACTGTNVEKAVELLLDLVMKRIEQCVEKS 191 (219)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988876655443
No 15
>KOG0091|consensus
Probab=100.00 E-value=3.5e-39 Score=228.47 Aligned_cols=169 Identities=28% Similarity=0.437 Sum_probs=156.7
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
|-+.++.+++|++.+|| ++..|..++|.+-.+||+|+|++.+.+.+ +|..+++++|||+||++|+++.+.||+++-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 56788999999999999 56778899999999999999999998888 6899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
+++|||++|++||+.+..|+.+...+.. .+-+.+||+|+||..+|+|+.++++.+|+.+|+.|+|+||++|.||++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999988776654 4556889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q psy2518 178 FRYLTTKCLSELRQQ 192 (208)
Q Consensus 178 f~~i~~~~~~~~~~~ 192 (208)
|..+.+.++....+.
T Consensus 165 F~mlaqeIf~~i~qG 179 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQG 179 (213)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887663
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=5.3e-38 Score=239.42 Aligned_cols=162 Identities=26% Similarity=0.498 Sum_probs=150.5
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+.|+++|++|+|| ++.++..+.|.+.|.+|+|.++..+.+.+++..+.++||||+|+++|+.+++.++++||++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3689999999999 47888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|+++++||+++..|+..+.+... +.|+++||||+|+.+.+.++.+++++++++. ++.|+||||++|.||+++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999998877654 7999999999999888899999999999885 789999999999999999999999
Q ss_pred HHHHHh
Q psy2518 184 KCLSEL 189 (208)
Q Consensus 184 ~~~~~~ 189 (208)
.+.+..
T Consensus 161 ~~~~~~ 166 (202)
T cd04120 161 DILKKM 166 (202)
T ss_pred HHHHhC
Confidence 887653
No 17
>KOG0083|consensus
Probab=100.00 E-value=2.9e-38 Score=217.00 Aligned_cols=158 Identities=25% Similarity=0.453 Sum_probs=149.3
Q ss_pred EEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeC
Q psy2518 31 YYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107 (208)
Q Consensus 31 ~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~ 107 (208)
+++|+|++|| ++.||..+.|.. +..+|+|+|+..+.+..++.+++++||||+||++|++....||++||+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 3689999999 578888888875 5789999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 108 ~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
.++.||++++.|+.++..+.. ...++++|||+|+.++|.|+.++++.+++.++++|.|+|||+|.||+-.|-.+++.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 999999999999999998887 7888999999999999999999999999999999999999999999999999999886
Q ss_pred HH
Q psy2518 187 SE 188 (208)
Q Consensus 187 ~~ 188 (208)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 54
No 18
>KOG0088|consensus
Probab=100.00 E-value=7.8e-39 Score=225.66 Aligned_cols=169 Identities=28% Similarity=0.493 Sum_probs=160.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...||++++|..++|| +.+|++.+.|+..+-+|+...|..+.+.+++....+.||||+|+++|..+.+.||+++++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 5689999999999999 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
+|||++|++||+.++.|..++.+..+ .+.+++||||.||+++|+|+.++++++|+.-|..|+++||+++.||.++|+.+
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L 170 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL 170 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence 99999999999999999999998887 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy2518 182 TTKCLSELRQQE 193 (208)
Q Consensus 182 ~~~~~~~~~~~~ 193 (208)
...+++.....+
T Consensus 171 t~~MiE~~s~~q 182 (218)
T KOG0088|consen 171 TAKMIEHSSQRQ 182 (218)
T ss_pred HHHHHHHhhhcc
Confidence 999887664433
No 19
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.5e-37 Score=233.65 Aligned_cols=161 Identities=22% Similarity=0.388 Sum_probs=147.6
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|++++|| ++.++..+.|.+.|.||++.++ .+.+.+++..+.++||||+|+++|..+++.+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4578999999999999 5788889999999999998554 577889999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEec
Q psy2518 103 ITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSV 168 (208)
Q Consensus 103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~Sa 168 (208)
+|||++++.||+++ ..|+..+.+..++.|+++||||+||.+ ++.++.++++++|+++++ +|+||||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999997 899999988888899999999999964 356999999999999996 9999999
Q ss_pred CCCCC-HHHHHHHHHHHHH
Q psy2518 169 KEDIN-VNSIFRYLTTKCL 186 (208)
Q Consensus 169 ~~~~~-i~~~f~~i~~~~~ 186 (208)
++|.| |+++|..+++.++
T Consensus 162 k~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 162 LQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 99998 9999999998654
No 20
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.3e-37 Score=232.63 Aligned_cols=158 Identities=27% Similarity=0.434 Sum_probs=145.2
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+|++++|+.++|| ++.++..+.|.++|.||++..+ .+.+.+++..++++||||+|+++|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999 5788999999999999998654 567788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCCC----------CCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2518 106 STIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQS----------VVAPEEADLLSRALGC-RLMRTSVKEDIN 173 (208)
Q Consensus 106 d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 173 (208)
|+++++||+++ ..|+..+.+..++.|+++||||+||.+++ .++.++++++++..++ .|+||||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999998 78999998877789999999999996543 5899999999999998 699999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKCL 186 (208)
Q Consensus 174 i~~~f~~i~~~~~ 186 (208)
|+++|+.+++.++
T Consensus 161 V~~~F~~~~~~~~ 173 (176)
T cd04133 161 VKAVFDAAIKVVL 173 (176)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.3e-36 Score=235.73 Aligned_cols=163 Identities=23% Similarity=0.382 Sum_probs=149.1
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|+++||| ++.++..+.|.++|.||++.++ .+.+.+++..+.++||||+|+++|..+++.++++||+++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 4578999999999999 5678889999999999999665 556888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEec
Q psy2518 103 ITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSV 168 (208)
Q Consensus 103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~Sa 168 (208)
+|||+++++||+++ ..|+..+.+..++.|+++||||+||.+ .+.++.++++++|+++++ .|+||||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 99999999999985 899999998877899999999999964 367999999999999999 7999999
Q ss_pred CCCC-CHHHHHHHHHHHHHHH
Q psy2518 169 KEDI-NVNSIFRYLTTKCLSE 188 (208)
Q Consensus 169 ~~~~-~i~~~f~~i~~~~~~~ 188 (208)
++|. ||+++|..++..+++.
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHh
Confidence 9998 8999999999988765
No 22
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9e-37 Score=228.79 Aligned_cols=159 Identities=22% Similarity=0.379 Sum_probs=145.2
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
.+||+++|++++|| ++.++..+.|.+.|.||++.++ .+.+.+++..+.+++|||+|+++|..+.+.+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999 5788889999999999998654 57788999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEecCC
Q psy2518 105 FSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKE 170 (208)
Q Consensus 105 ~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~Sa~~ 170 (208)
||+++++||+++ ..|+..+.+..++.|+++||||+||.+ ++.++.++++++++++++ .|+||||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999996 899999998888999999999999954 356999999999999997 899999999
Q ss_pred CCC-HHHHHHHHHHHHH
Q psy2518 171 DIN-VNSIFRYLTTKCL 186 (208)
Q Consensus 171 ~~~-i~~~f~~i~~~~~ 186 (208)
|.| |+++|..+++..+
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998654
No 23
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2e-36 Score=229.40 Aligned_cols=162 Identities=23% Similarity=0.385 Sum_probs=145.5
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|++++|| ++.++..+.|.+.|.||++.. +.+.+.+++..+.++||||+|+++|+.+++.+++++|++++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDN-YSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 358999999999999 578888999999999999854 45667789999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecC
Q psy2518 104 TFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSVK 169 (208)
Q Consensus 104 v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~ 169 (208)
|||+++++||+++. .|...+.+..++.|+++||||+||.+. +.++.++++++++.++. +|+||||+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999996 698888776668999999999999654 34788899999999984 99999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy2518 170 EDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 170 ~~~~i~~~f~~i~~~~~~~ 188 (208)
+|.||+++|+.+++.+...
T Consensus 161 ~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988654
No 24
>KOG0097|consensus
Probab=100.00 E-value=1.2e-35 Score=206.24 Aligned_cols=171 Identities=27% Similarity=0.422 Sum_probs=160.5
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
--.|.+.||.+++|+-|+|| ++.+|..++|...-+.|+|++|..+.+.+.|++++++||||+|+++|+...+.||+++
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga 84 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 84 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34688999999999999999 5678889999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
.+.+.|||++.+.+++.+..|+.......+ +..++++|||.||+.+|.|+.+++.+++.+.|+-|+|+|||+|.||++.
T Consensus 85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 999999999999999999999999887766 7788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy2518 178 FRYLTTKCLSELRQ 191 (208)
Q Consensus 178 f~~i~~~~~~~~~~ 191 (208)
|-+.++++......
T Consensus 165 fle~akkiyqniqd 178 (215)
T KOG0097|consen 165 FLETAKKIYQNIQD 178 (215)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999998876543
No 25
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=4.4e-35 Score=217.12 Aligned_cols=161 Identities=29% Similarity=0.428 Sum_probs=149.7
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
.+||+++|+.++|| ++.++..+.|.+.+++|++.++..+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999 4688889999999999999999888889999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
||+++++||+.+..|+..+..... +.|+++||||+|+.+++.++.+++.++++..++++++|||++|.|++++|..+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998877654 7899999999999888889999999999999999999999999999999999998
Q ss_pred HHHH
Q psy2518 184 KCLS 187 (208)
Q Consensus 184 ~~~~ 187 (208)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8754
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4.1e-35 Score=218.74 Aligned_cols=160 Identities=29% Similarity=0.360 Sum_probs=146.0
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
.+||+++|+.++|| ++.++..+.|.+.+.||++. .+.+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIED-AYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccc-eEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999 46788899999999999984 4456678899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
||++++.||+.+..|...+.+.. ++.|+++||||+|+.+.++++.++++++++.++++|+||||++|.||+++|++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999988877653 3799999999999988788999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy2518 183 TKCLS 187 (208)
Q Consensus 183 ~~~~~ 187 (208)
+.+..
T Consensus 161 ~~~~~ 165 (172)
T cd04141 161 REIRR 165 (172)
T ss_pred HHHHH
Confidence 98775
No 27
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=3.2e-35 Score=219.90 Aligned_cols=158 Identities=23% Similarity=0.366 Sum_probs=142.2
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
++|++++|+.++|| ++.++..+.|.+.|.||++.++ .+.+.+++..+.++||||+|+++|..++..+++++|++++|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 47999999999999 5788889999999999998555 45677889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEEecCC
Q psy2518 105 FSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALG-CRLMRTSVKE 170 (208)
Q Consensus 105 ~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~ 170 (208)
||+++++||+++. .|+..+.+..++.|+++||||+|+.+. +.++.+++++++++.+ +.|+||||++
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 9999999999996 699888877678999999999998543 6788999999999888 5999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy2518 171 DINVNSIFRYLTTKC 185 (208)
Q Consensus 171 ~~~i~~~f~~i~~~~ 185 (208)
|.|++++|+.++..+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998864
No 28
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2e-34 Score=216.14 Aligned_cols=163 Identities=25% Similarity=0.389 Sum_probs=149.2
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC----------CeEEEEEEEeCCChhhhcchhH
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE----------GEEVRLMLWDTAGQEEFDAITK 92 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~----------~~~~~l~i~Dt~g~~~~~~~~~ 92 (208)
.+.+||+++|++++|| +++++..+.|.+.+.+|++.++..+.+.+. +..+.++||||+|++++..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 4679999999999999 568888999999999999999888777764 4678999999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 170 (208)
.+++++|++++|||+++++||.++..|+..+.... ++.|+++||||+|+.+.+.++.+++.+++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999987764 3789999999999988788999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy2518 171 DINVNSIFRYLTTKCLS 187 (208)
Q Consensus 171 ~~~i~~~f~~i~~~~~~ 187 (208)
|.|++++|+.+++.+++
T Consensus 162 ~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 162 GTNVEKAVERLLDLVMK 178 (180)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988765
No 29
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.3e-34 Score=217.85 Aligned_cols=159 Identities=21% Similarity=0.317 Sum_probs=141.9
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+|++++|++++|| ++.++..+.|.++|.||+|.++..+.+.+++..+.++||||+|+++|..++..++++||++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999 46788899999999999999998899999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCC-----CCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLD-----QSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~-----~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
|+++++||+++..|+..+.+..+ ..| ++||||+|+.. ++....++++++++..++++++|||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999987665 455 68899999842 122234677889998999999999999999999999
Q ss_pred HHHHHHHH
Q psy2518 180 YLTTKCLS 187 (208)
Q Consensus 180 ~i~~~~~~ 187 (208)
.+++.++.
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99998875
No 30
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.1e-34 Score=219.09 Aligned_cols=164 Identities=29% Similarity=0.471 Sum_probs=149.6
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
+||+++|+.++|| +++++..+.|.+.+.||+|.++..+.+.++ +..+.+++|||+|++++..+++.+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5999999999999 468888999999999999999988888888 8899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCHHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENEC-----GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f 178 (208)
||+++++||+.+..|+..+.... .+.|+++||||+|+.+.+.+..+++.++++..+ ..|++|||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998886532 378999999999997667889999999999999 599999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy2518 179 RYLTTKCLSELRQ 191 (208)
Q Consensus 179 ~~i~~~~~~~~~~ 191 (208)
+.+++.+.+..+.
T Consensus 161 ~~l~~~l~~~~~~ 173 (201)
T cd04107 161 RFLVKNILANDKN 173 (201)
T ss_pred HHHHHHHHHhchh
Confidence 9999998876543
No 31
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.7e-34 Score=213.14 Aligned_cols=157 Identities=26% Similarity=0.443 Sum_probs=146.8
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|+.++|| ++.++..+.|.+.+.||+|.++..+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999 46788899999999999999988889999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
|+++++||+.+..|+..+.+..+ +.|+++||||+|+.+++.+..+++..+++..+++|+||||++|.||+++|.++++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887765 79999999999998888899999999999999999999999999999999999864
No 32
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.5e-34 Score=221.80 Aligned_cols=162 Identities=19% Similarity=0.359 Sum_probs=145.0
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|+.++|| ++.++..+.|.+.|.||++.++ ...+.+++..+.++||||+|++.|..+++.+|+++|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 7999999999999 5788889999999999998655 567888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2518 106 STIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSVKED 171 (208)
Q Consensus 106 d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~ 171 (208)
|+++++||+++ ..|...+....++.|++|||||+||.+. ..++.++++.++++.++ .|+||||+++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 99999999999 6788888777778999999999999542 24888999999999996 9999999999
Q ss_pred CC-HHHHHHHHHHHHHHHhh
Q psy2518 172 IN-VNSIFRYLTTKCLSELR 190 (208)
Q Consensus 172 ~~-i~~~f~~i~~~~~~~~~ 190 (208)
.+ |+++|..++...+.+..
T Consensus 161 ~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 161 ERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CcCHHHHHHHHHHHHHhccC
Confidence 85 99999999998776543
No 33
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.1e-34 Score=213.82 Aligned_cols=158 Identities=30% Similarity=0.472 Sum_probs=151.5
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
||+++|+.++|| ++.++..+.|.+.+.||+|.+...+.+.+++..+.+++||++|++++..+...+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999 467888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 107 TIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
+++++||+++..|+..+....+ +.|++++|||+|+.+.+.++.+++++++++++++|+||||+++.||.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999988 799999999999988899999999999999999999999999999999999999987
Q ss_pred H
Q psy2518 186 L 186 (208)
Q Consensus 186 ~ 186 (208)
+
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 34
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=5.6e-34 Score=211.48 Aligned_cols=162 Identities=31% Similarity=0.534 Sum_probs=150.6
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|+.++|| ++.++..+.|.+.+.||++.++..+.+.+++..+.+++|||+|++++..++..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 579999999999999 578888999999999999999888888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
|||++++++|+.+..|+..+.+... +.|+++||||+|+.+.+.+..+++..++..++++++++||++|.|++++|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999987654 789999999999987788888999999999999999999999999999999999
Q ss_pred HHHHH
Q psy2518 183 TKCLS 187 (208)
Q Consensus 183 ~~~~~ 187 (208)
+.+..
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 98764
No 35
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=7.9e-34 Score=216.54 Aligned_cols=169 Identities=31% Similarity=0.535 Sum_probs=155.6
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
++..+||+++|+.++|| ++.++..+.|...+.||++.++....+.+++..+.+.||||+|++.+..++..++++++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 56689999999999999 4678888999999999999999888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
++|||+++++||+.+..|+..+....+..|+++||||+|+.+.+.+..+++..++...+++|+++||++|.||+++|+.+
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999999999998877789999999999998777888899999999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q psy2518 182 TTKCLSELRQQ 192 (208)
Q Consensus 182 ~~~~~~~~~~~ 192 (208)
++.++.....+
T Consensus 163 ~~~~~~~~~~~ 173 (199)
T cd04110 163 TELVLRAKKDN 173 (199)
T ss_pred HHHHHHhhhcc
Confidence 99988765443
No 36
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.1e-34 Score=217.79 Aligned_cols=156 Identities=22% Similarity=0.346 Sum_probs=132.0
Q ss_pred eeeEEEecCceEEE-EEE--eee-----cCcccccccccccc-ceeeEE--------EEECCeEEEEEEEeCCChhhhcc
Q psy2518 27 ITKAYYRGAQACVI-TFS--TID-----RDSFEAAHSWKMKV-SIKRTI--------KECEGEEVRLMLWDTAGQEEFDA 89 (208)
Q Consensus 27 ~~ki~~vG~s~~gk-~~~--~~~-----~~~f~~~~~~t~~~-~~~~~~--------~~~~~~~~~l~i~Dt~g~~~~~~ 89 (208)
.+||+++|++++|| .+. ++. .+.|.++|.||++. +.+... ..+++..+.++||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 47999999999999 332 333 34567889999973 433332 25789999999999999986 3
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCC-------------------CCCCCH
Q psy2518 90 ITKAYYRGAQACVITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLD-------------------QSVVAP 149 (208)
Q Consensus 90 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~-------------------~~~v~~ 149 (208)
+.+.+++++|++++|||++++.||+++. .|+..+.+..++.|+++||||+||.+ .+.++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4567899999999999999999999996 69999887777899999999999964 478999
Q ss_pred HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 150 EEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 150 ~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
++++++|++++++|+||||++|.||+++|+.+++.
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999998864
No 37
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.4e-33 Score=217.78 Aligned_cols=169 Identities=27% Similarity=0.457 Sum_probs=155.9
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
++.+.+||+++|++++|| ++.++..+.|...+.+|+|.++..+.+.+++..+.++||||+|++++..++..+++++++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 356789999999999999 466888899988999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
+++|||++++.+|+++..|+..+.+..+ +.|+++||||+|+.+.+.++.+++..++...+++++++||++|.|++++|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999888765 799999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy2518 180 YLTTKCLSELRQ 191 (208)
Q Consensus 180 ~i~~~~~~~~~~ 191 (208)
.+++.+.+....
T Consensus 168 ~l~~~i~~~~~~ 179 (216)
T PLN03110 168 TILLEIYHIISK 179 (216)
T ss_pred HHHHHHHHHhhc
Confidence 999998775443
No 38
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.3e-33 Score=209.19 Aligned_cols=161 Identities=30% Similarity=0.483 Sum_probs=148.6
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
++||+++|+.++|| ++.++..+.|...+.||+|.++..+.+..++..+.+++|||+|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v 80 (165)
T cd01865 1 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 80 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence 37999999999999 5788889999999999999888888888888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
||++++++|+.+..|+..+.+... ..|+++||||+|+.+.+.+..+++.+++..++++++++||++|.|++++|+.+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 81 YDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999987765 7899999999999877788888999999999999999999999999999999998
Q ss_pred HHHH
Q psy2518 184 KCLS 187 (208)
Q Consensus 184 ~~~~ 187 (208)
.+.+
T Consensus 161 ~~~~ 164 (165)
T cd01865 161 IICD 164 (165)
T ss_pred HHHh
Confidence 8764
No 39
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=5.9e-34 Score=212.86 Aligned_cols=156 Identities=23% Similarity=0.385 Sum_probs=140.7
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+|++++|+.++|| ++.++..+.|.++|.||++ +.+.+.+.+++..+.++||||+|++.+..+++.+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 6999999999999 4677888999999999997 566677788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2518 106 STIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSVKED 171 (208)
Q Consensus 106 d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~ 171 (208)
|+++++||+++. .|+..+....++.|+++||||+|+.+. +.++.+++++++++++. +|+||||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 999999999995 698888777668999999999999542 36889999999999995 9999999999
Q ss_pred CCHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTK 184 (208)
Q Consensus 172 ~~i~~~f~~i~~~ 184 (208)
.|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998864
No 40
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=5.3e-34 Score=220.42 Aligned_cols=162 Identities=23% Similarity=0.350 Sum_probs=147.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|++|+|| ++.++..+.|...+.||+|.++....+..++..+.+++|||+|+++|..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 5679999999999999 46778899999999999999998888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
+|||+++++||+++..|+..+.+..++.|+++||||+|+.. +.+..+++ .+++..+++|++|||++|.||+++|.+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHH
Confidence 99999999999999999999988777899999999999954 45556655 67888889999999999999999999999
Q ss_pred HHHHHH
Q psy2518 183 TKCLSE 188 (208)
Q Consensus 183 ~~~~~~ 188 (208)
+.+...
T Consensus 169 ~~~~~~ 174 (219)
T PLN03071 169 RKLAGD 174 (219)
T ss_pred HHHHcC
Confidence 988654
No 41
>KOG0393|consensus
Probab=100.00 E-value=9.3e-34 Score=210.62 Aligned_cols=165 Identities=24% Similarity=0.382 Sum_probs=152.9
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
...+|+++||+.++|| ++..+..+.|.++|.||+- |-+...+.++ |+.+.+.+|||+||+.|..+++..|..+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999 5788889999999999997 8888889995 9999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEe
Q psy2518 102 VITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTS 167 (208)
Q Consensus 102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~S 167 (208)
++||++++++||+++ .+|+.++.+++++.|+|+||+|.||..+ ..++.++++.+|++.|+ .|+|||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 999999999999998 8999999999999999999999999742 47899999999999996 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhh
Q psy2518 168 VKEDINVNSIFRYLTTKCLSELR 190 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~~~~~~~ 190 (208)
|++..|+.++|+..+..++....
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999999999887653
No 42
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=212.49 Aligned_cols=166 Identities=26% Similarity=0.327 Sum_probs=149.8
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|++++|| ++.++..+.|...+.||++..+ .+.+.+++..+.++||||+|+++|..++..+++++|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 458999999999999 4678889999999999998544 6788899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
|||++++++|+.+..|+..+.+... +.|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.||+++|..+
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999998877654 78999999999997778888888999999889999999999999999999999
Q ss_pred HHHHHHHhhhh
Q psy2518 182 TTKCLSELRQQ 192 (208)
Q Consensus 182 ~~~~~~~~~~~ 192 (208)
++.+.+..++.
T Consensus 163 ~~~l~~~~~~~ 173 (189)
T PTZ00369 163 VREIRKYLKED 173 (189)
T ss_pred HHHHHHHhhcc
Confidence 99988765543
No 43
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2e-33 Score=216.78 Aligned_cols=161 Identities=23% Similarity=0.282 Sum_probs=148.5
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECC-eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEG-EEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
+||+++|++++|| +++++.++.|...|.||++.+++.+.+.+++ ..+.++||||+|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999 5788889999999999999999999888865 689999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC----CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECG----EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~----~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
||+++++||+++..|+..+.+... ++|+++||||+|+.+.+.++.+++..+++.++++++++||++|.||+++|+.
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999987653 4689999999999877889999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy2518 181 LTTKCLSE 188 (208)
Q Consensus 181 i~~~~~~~ 188 (208)
+++.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99998754
No 44
>KOG0395|consensus
Probab=100.00 E-value=9.2e-33 Score=208.98 Aligned_cols=161 Identities=30% Similarity=0.395 Sum_probs=152.6
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+|++++|..|+|| +..+|.++.|.+.|.||++ +.+.+.+.++++.+.+.|+||+|++.|..+...+++++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999 6799999999999999998 8899999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
||+++++.||+.+..+..++.+... ..|+++||||+|+...|+|+.+++++++..++++|+|+||+.+.+++++|..+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999966554 78999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy2518 182 TTKCLS 187 (208)
Q Consensus 182 ~~~~~~ 187 (208)
++.+-.
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 998765
No 45
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.4e-33 Score=211.17 Aligned_cols=165 Identities=27% Similarity=0.456 Sum_probs=152.0
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|++++|| +++++..+.|...+.+|+|.++..+.+.+++..+.+++|||+|++.+..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999 57888899999889999998888888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
|++++++|+++..|+..+.+... ..|++++|||+|+.+.+.+..+++..++...+++++++||++|.|++++|..+++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999987765 68999999999998778889999999999989999999999999999999999999
Q ss_pred HHHHhhhh
Q psy2518 185 CLSELRQQ 192 (208)
Q Consensus 185 ~~~~~~~~ 192 (208)
+..+....
T Consensus 161 ~~~~~~~~ 168 (188)
T cd04125 161 IIKRLEEQ 168 (188)
T ss_pred HHHHhhcC
Confidence 88765443
No 46
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.9e-33 Score=207.26 Aligned_cols=160 Identities=29% Similarity=0.500 Sum_probs=149.1
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
.+|++++|.+++|| ++.++..+.|...+.+|++.++..+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999 5788888999999999999999889999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
||+++++||.++..|+..+.+... +.|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|..+++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 999999999999999999987763 7899999999999877888899999999999999999999999999999999998
Q ss_pred HHH
Q psy2518 184 KCL 186 (208)
Q Consensus 184 ~~~ 186 (208)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 875
No 47
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.8e-33 Score=215.26 Aligned_cols=165 Identities=28% Similarity=0.467 Sum_probs=151.1
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
.+||+++|++++|| +++++..+.|...+.||+|.++..+.+.+ ++..+.+++|||+|++++..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999 57888889999999999999999888887 5778999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
|||+++++||+++..|+..+.+... ..|+++||||+|+.+.+.++.+++.++++.++++|+++||++|.|++++|+.+
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887654 57789999999998878899999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy2518 182 TTKCLSELRQ 191 (208)
Q Consensus 182 ~~~~~~~~~~ 191 (208)
++.+.+..+.
T Consensus 162 ~~~~~~~~~~ 171 (211)
T cd04111 162 TQEIYERIKR 171 (211)
T ss_pred HHHHHHHhhc
Confidence 9998876543
No 48
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2e-33 Score=213.98 Aligned_cols=154 Identities=24% Similarity=0.405 Sum_probs=140.8
Q ss_pred ecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh
Q psy2518 33 RGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR 110 (208)
Q Consensus 33 vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 110 (208)
+|+.++|| ++.++..+.|.+.|.||+|.++..+.+.+++..+.++||||+|+++|..++..+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999 5788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518 111 DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 111 ~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
.||+++..|+..+.+..++.|+++||||+|+.. +.+..+. ..+++..++.|+||||++|.||+++|.++++.+...
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999998877899999999999864 5566554 467888899999999999999999999999988754
No 49
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3.8e-33 Score=207.76 Aligned_cols=159 Identities=27% Similarity=0.353 Sum_probs=143.4
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
||+++|+.++|| +++++..+.|.++|.||++.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999 578889999999999999999988889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-C-CCCEEEEEeCCCCCCCCC--CCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 107 TIDRDSFEAAHSWKMKVENEC-G-EIPTVLVQNKIDLLDQSV--VAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~-~-~~piivvgnK~Dl~~~~~--v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
++++++|+.+..|+..+.+.. + +.|+++||||+|+.+.+. +.++++..++++++++|+++||++|.|++++|+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999886553 3 578999999999965433 456778888888899999999999999999999999
Q ss_pred HHHHH
Q psy2518 183 TKCLS 187 (208)
Q Consensus 183 ~~~~~ 187 (208)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88754
No 50
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.1e-33 Score=212.58 Aligned_cols=161 Identities=26% Similarity=0.359 Sum_probs=142.4
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
.||+++|+.++|| ++.++..+.|.+.+.||++..+ .+.+.+++..+.++||||+|++.|..+++.+++++|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3899999999999 5688889999999999998654 456777888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhC-CeEEEEecCCC
Q psy2518 106 STIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQS------------VVAPEEADLLSRALG-CRLMRTSVKED 171 (208)
Q Consensus 106 d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~------------~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 171 (208)
|+++++||+.+. .|+..+....++.|+++||||+|+.+.+ .++.+++..+++..+ ++|+||||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999999999985 6999998777789999999999996543 467788888988887 59999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q psy2518 172 INVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 172 ~~i~~~f~~i~~~~~~~~ 189 (208)
.||+++|.++++.++...
T Consensus 160 ~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 160 RGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999999887544
No 51
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=3.6e-33 Score=205.75 Aligned_cols=157 Identities=29% Similarity=0.411 Sum_probs=143.4
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|+.++|| ++.++..+.|.+.+.||++ +.+.+.+.+++..+.++||||+|+++|..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999 4688889999999999997 667788889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|++++++|+.+..|+..+.+... +.|+++|+||+|+.+.+.+..+++..+++.++.+++++||++|.|++++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999998877643 7999999999999777788888888899888899999999999999999999987
Q ss_pred HH
Q psy2518 184 KC 185 (208)
Q Consensus 184 ~~ 185 (208)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 64
No 52
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=5.3e-33 Score=210.50 Aligned_cols=162 Identities=24% Similarity=0.373 Sum_probs=144.9
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
||+++|+.++|| +++++..+.|.+.+.||++.. +.+.+.+++..+.++||||+|+++|..++..+++++|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999 467788899999999999854 45667788999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 107 TIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
+++++||+.+..|+..+.... ++.|+++||||+|+.+.+.++.+++..++..++++|+++||++|.|++++|+.++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999998887654 3689999999999987788898889999999999999999999999999999999
Q ss_pred HHHHHHhhh
Q psy2518 183 TKCLSELRQ 191 (208)
Q Consensus 183 ~~~~~~~~~ 191 (208)
+.+..+...
T Consensus 160 ~~l~~~~~~ 168 (190)
T cd04144 160 RALRQQRQG 168 (190)
T ss_pred HHHHHhhcc
Confidence 987655443
No 53
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=211.06 Aligned_cols=167 Identities=25% Similarity=0.464 Sum_probs=153.9
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
+.+.+||+++|+.++|| +++++..+.|...+.+|++.++..+.+.+++..+.+++|||+|++.+..++..+++++|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45689999999999999 5688888889999999999999889999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
++|||++++.+|+.+..|+..+.+... +.|+++|+||+|+.+.+.++.++++++++.++++++++||+++.||+++|.+
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999988876654 7999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy2518 181 LTTKCLSELR 190 (208)
Q Consensus 181 i~~~~~~~~~ 190 (208)
+++.+.+...
T Consensus 163 l~~~~~~~~~ 172 (210)
T PLN03108 163 TAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHHhh
Confidence 9999887644
No 54
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=7.1e-33 Score=204.83 Aligned_cols=159 Identities=24% Similarity=0.385 Sum_probs=147.4
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|.+++|| +++++.++.|.+.+.||++.++..+.+.+++..+.+++|||+|++.+..+++.+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999 57888899999999999999998899999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC------CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG------EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~------~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
|++++.+|+.+..|+..+.+... +.|+++|+||+|+.+++.+..++++.++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999887653 589999999999976677889999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy2518 180 YLTTKCL 186 (208)
Q Consensus 180 ~i~~~~~ 186 (208)
.+++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 55
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1e-32 Score=212.70 Aligned_cols=160 Identities=23% Similarity=0.324 Sum_probs=139.9
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|..++|| ++.++..+.|.. +.||+|.++..+.. ..+.+.||||+|++.|..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 5899999999999 578888999975 68899877655433 5688999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHhC-----
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLD-------------------QSVVAPEEADLLSRALG----- 160 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~-------------------~~~v~~~~~~~~~~~~~----- 160 (208)
|+++++||+++..|+..+.+... +.|+++||||+||.+ .++++.++++.++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 99999999999888877776544 789999999999965 68899999999999876
Q ss_pred ---------CeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Q psy2518 161 ---------CRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ 192 (208)
Q Consensus 161 ---------~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~ 192 (208)
++|+||||++|.||+++|..+++.++...-+.
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~ 196 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQ 196 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999887655443
No 56
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1e-32 Score=203.96 Aligned_cols=157 Identities=29% Similarity=0.410 Sum_probs=142.6
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|+.++|| ++.++..+.|.+.+.||++.. +.+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6999999999999 467888899999999999844 4677888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|++++.+|+.+.+|+..+.+.. .+.|+++||||+|+.+++.++.+++.++++.++++++++||++|.|++++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999999987654 37999999999999877778888888899989999999999999999999999987
Q ss_pred HH
Q psy2518 184 KC 185 (208)
Q Consensus 184 ~~ 185 (208)
.+
T Consensus 161 ~l 162 (164)
T cd04175 161 QI 162 (164)
T ss_pred Hh
Confidence 65
No 57
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=2e-32 Score=203.36 Aligned_cols=164 Identities=26% Similarity=0.467 Sum_probs=151.1
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
|..++||+++|.+++|| ++.++..+.+...+.+|.|.++..+.+.+++..+.+.+|||+|++++..+...+++++|++
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 56789999999999999 5677888899999999999998888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhc-CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
++|||++++.||+.+..|+..+.+.. ++.|+++|+||.|+.+++.++.+++..++...+++++|+||+++.|++++|..
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998765 37999999999999877788999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy2518 181 LTTKCLS 187 (208)
Q Consensus 181 i~~~~~~ 187 (208)
+++.+++
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9988754
No 58
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.8e-32 Score=202.72 Aligned_cols=160 Identities=28% Similarity=0.470 Sum_probs=148.8
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|.+++|| +++++..+.|...+.||++.++..+.+..++..+.+++||++|++++..++..++++++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 468999999999999 578888899999999999999989999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
|||++++.+|+++.+|+..+.+..+ +.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999988776 699999999999987788889999999998889999999999999999999998
Q ss_pred HHH
Q psy2518 183 TKC 185 (208)
Q Consensus 183 ~~~ 185 (208)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.2e-32 Score=202.80 Aligned_cols=157 Identities=53% Similarity=0.789 Sum_probs=145.6
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC--CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE--GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
+||+++|++++|| +++++..+.|.+.+.||++.++..+.+.+. +..+.+++|||+|++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999 578888899999999999999888888887 888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|||++++++|+.+..|+..+.+..++.|+++|+||+|+..++.+..+++..+++..+++++++||++|.|++++|+.+.+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999877778999999999999877888889999999999999999999999999999999875
Q ss_pred H
Q psy2518 184 K 184 (208)
Q Consensus 184 ~ 184 (208)
.
T Consensus 161 ~ 161 (162)
T cd04106 161 K 161 (162)
T ss_pred h
Confidence 4
No 60
>PTZ00099 rab6; Provisional
Probab=100.00 E-value=9.2e-32 Score=201.09 Aligned_cols=143 Identities=29% Similarity=0.431 Sum_probs=132.7
Q ss_pred cCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy2518 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE 126 (208)
Q Consensus 47 ~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 126 (208)
.+.|.+.|.||+|.++..+.+.+++..+++.||||+|++++..++..++++||++|+|||+++++||+.+..|+..+.+.
T Consensus 2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 81 (176)
T ss_pred CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 127 CG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 127 ~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
.. +.|+++||||+||.+.+.++.+++..++..+++.|+||||++|.||+++|+++++.+.+..
T Consensus 82 ~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 54 7899999999999877788999999999999999999999999999999999999987644
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.9e-32 Score=203.22 Aligned_cols=158 Identities=26% Similarity=0.414 Sum_probs=142.0
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|++++|| ++.++..+.|...+.||++.++....+..++..+.+++|||+|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5999999999999 46777789999999999999988888888899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
|+++++||+.+..|+..+.+..++.|+++||||+|+.+ +.+.. +..++++..+++++|+||++|.|++++|+++++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 99999999999999999988877899999999999963 44443 44567777778999999999999999999999988
Q ss_pred HH
Q psy2518 186 LS 187 (208)
Q Consensus 186 ~~ 187 (208)
.+
T Consensus 159 ~~ 160 (166)
T cd00877 159 LG 160 (166)
T ss_pred Hh
Confidence 65
No 62
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.9e-32 Score=201.77 Aligned_cols=159 Identities=32% Similarity=0.476 Sum_probs=146.2
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
+.+||+++|.+++|| ++.++..+.|.+++.+|.+.++..+.+.+++..+.+++|||+|++.+..++..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 579999999999999 467778899999999999988888889999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~i 181 (208)
|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..+++..+. .++++||++|.|++++|+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999987654 799999999999987778888899999998887 78999999999999999999
Q ss_pred HHH
Q psy2518 182 TTK 184 (208)
Q Consensus 182 ~~~ 184 (208)
++.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 865
No 63
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.1e-32 Score=201.93 Aligned_cols=157 Identities=22% Similarity=0.358 Sum_probs=143.0
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|..++|| ++.++..+.|.+.+.||++ +++.+.+.+++..+.++||||+|+++|..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999 4568889999999999987 677788889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|++++.||+++..|+..+.+.. .+.|+++||||+|+.+++.+..+++..+++..++++++|||++|.|++++|..+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998888764 37999999999999777778888888899888899999999999999999999987
Q ss_pred HH
Q psy2518 184 KC 185 (208)
Q Consensus 184 ~~ 185 (208)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 64
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.9e-32 Score=205.93 Aligned_cols=162 Identities=25% Similarity=0.460 Sum_probs=148.4
Q ss_pred eeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
+||+++|+.++|| ++.++..+.|.. .+.+|++.++..+.+.+++..+.++||||+|++++..++..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 5899999999999 467777888864 7889999898888889999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
||++++++|+++..|+..+.+..+ ..|+++||||+|+..++.+..+++..+++.++++|+++||++|.|++++|..+++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999988765 7899999999999777888888999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy2518 184 KCLSEL 189 (208)
Q Consensus 184 ~~~~~~ 189 (208)
.+....
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 987764
No 65
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=4.4e-32 Score=201.91 Aligned_cols=159 Identities=30% Similarity=0.446 Sum_probs=146.3
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc-chhHhhhcCCcEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD-AITKAYYRGAQACVI 103 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-~~~~~~~~~~d~ii~ 103 (208)
.+||+++|++++|| ++.++..+.|...+.+|++.++..+.+.+++..+.+++|||+|++++. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999 567888899999999999999999999999999999999999999887 578889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC---CCCHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE---DINVNSIF 178 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~---~~~i~~~f 178 (208)
|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.++.+++.++++..+++|+||||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 9999999999999999999887653 799999999999988888999999999999999999999999 89999999
Q ss_pred HHHHHHH
Q psy2518 179 RYLTTKC 185 (208)
Q Consensus 179 ~~i~~~~ 185 (208)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 66
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6.2e-32 Score=203.92 Aligned_cols=163 Identities=23% Similarity=0.356 Sum_probs=143.9
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
+||+++|+.++|| ++.++..+.|.+.+.||++.++.. .+... +..+.++||||+|++++..+++.+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999 468888999999999999866644 45554 8889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC----CCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHH
Q psy2518 105 FSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ----SVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIF 178 (208)
Q Consensus 105 ~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~----~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f 178 (208)
||+++++||+++. .|+..+....++.|+++||||+|+.++ +.+..+++++++..+++ ++++|||++|.||+++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence 9999999999995 698888776668999999999999543 36778899999999998 99999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy2518 179 RYLTTKCLSELRQ 191 (208)
Q Consensus 179 ~~i~~~~~~~~~~ 191 (208)
..+++.+......
T Consensus 160 ~~l~~~~~~~~~~ 172 (187)
T cd04132 160 DTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHhhhhh
Confidence 9999998876544
No 67
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=7.9e-32 Score=200.29 Aligned_cols=159 Identities=28% Similarity=0.449 Sum_probs=144.9
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|+.++|| ++.++..+.|.+.+.+|+|.++..+.+.+++..+.++||||+|++++..++..+++++|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 3579999999999999 46778889999999999999888888999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-----CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG-----EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNS 176 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~ 176 (208)
+|||+++++||+.+..|...+.+... +.|+++||||+|+. ++.+..+++++++++++. +++++||++|.|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 99999999999999999988876542 58999999999996 567888999999999885 899999999999999
Q ss_pred HHHHHHHH
Q psy2518 177 IFRYLTTK 184 (208)
Q Consensus 177 ~f~~i~~~ 184 (208)
+|+.+++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99999875
No 68
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=3.2e-32 Score=200.41 Aligned_cols=150 Identities=18% Similarity=0.220 Sum_probs=130.7
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|++|+|| ++.++..+.|.+.+.|+.+ .+ .+.+.+++..+.+++|||+|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999 4567888999888877643 44 57788999999999999999975 35678999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCC--CCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLL--DQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~--~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f~~ 180 (208)
|+++++||+++..|+..+.+... +.|+++||||+|+. .++.++.+++++++++.+ +.|+||||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987763 78999999999985 357899999999998874 79999999999999999999
Q ss_pred HHHH
Q psy2518 181 LTTK 184 (208)
Q Consensus 181 i~~~ 184 (208)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9864
No 69
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.98 E-value=1.1e-31 Score=198.81 Aligned_cols=155 Identities=21% Similarity=0.289 Sum_probs=139.5
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|++++|| ++.++..+.|...+.||++ ..+.+.+..++..+.+++|||+|++++..++..+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999 5678889999999999997 445667777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
|+++++||+++..|+..+.+.. ++.|+++||||+|+.+.+.+..+++..++..++++|+||||++|.|++++|+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999988776653 368999999999997777888888898999889999999999999999999998
Q ss_pred HH
Q psy2518 182 TT 183 (208)
Q Consensus 182 ~~ 183 (208)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 70
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.98 E-value=1.3e-31 Score=197.72 Aligned_cols=158 Identities=23% Similarity=0.380 Sum_probs=140.9
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|++++|| ++.++..+.|.+.+.+|.+.+++.+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999 46778889999999999988888888888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
|++++.+|+++..|+..+.+..++.|+++|+||+|+... ..++...++...+++++++||++|.|++++|+.+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999887678999999999998432 23455667777788999999999999999999999887
Q ss_pred HHH
Q psy2518 186 LSE 188 (208)
Q Consensus 186 ~~~ 188 (208)
++.
T Consensus 158 ~~~ 160 (161)
T cd04124 158 VSY 160 (161)
T ss_pred Hhc
Confidence 653
No 71
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=5e-32 Score=201.99 Aligned_cols=156 Identities=26% Similarity=0.399 Sum_probs=140.1
Q ss_pred EEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeC
Q psy2518 30 AYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107 (208)
Q Consensus 30 i~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~ 107 (208)
|+++|+.++|| ++.++..+.|...+.||++.. +...+.+++..+.+++|||+|++++..+++.+++++|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 57999999999 568888999999999998744 456778899999999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2518 108 IDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSVKEDIN 173 (208)
Q Consensus 108 ~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 173 (208)
++++||+++. .|+..+.+..++.|+++||||+|+..+ +.++.+++.++++..+. +|++|||++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999995 699999887779999999999999642 34888999999999997 999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKCL 186 (208)
Q Consensus 174 i~~~f~~i~~~~~ 186 (208)
++++|+.+++.++
T Consensus 160 v~~lf~~l~~~~~ 172 (174)
T smart00174 160 VREVFEEAIRAAL 172 (174)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998874
No 72
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.98 E-value=1.5e-31 Score=197.08 Aligned_cols=157 Identities=29% Similarity=0.442 Sum_probs=145.6
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|+.++|| ++.++..+.|...+.+|++.++..+.+.+++..+.+++|||+|++++...++.+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999 46777889999999999999998899999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
|++++.+|.++..|+..+..... +.|+++++||+|+.+.+.+..+++..+++..++.++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998876654 89999999999998778889999999999999999999999999999999999875
No 73
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.98 E-value=1.8e-31 Score=197.11 Aligned_cols=158 Identities=21% Similarity=0.350 Sum_probs=141.3
Q ss_pred eeEEEecCceEEE--EEEeeecC--ccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRD--SFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~--~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
+||+++|++++|| ++.++..+ .|.+++.+|+|.++..+.+.++ +..+.+.+|||+|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 5899999999999 34555544 7889999999999888888775 67899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
+|||++++++|+.+..|+..+.+...+.|+++|+||+|+.+++++..++++.++...++++++|||++|.|++++|+.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 99999999999999999999887766799999999999977777888888888888889999999999999999999998
Q ss_pred HHH
Q psy2518 183 TKC 185 (208)
Q Consensus 183 ~~~ 185 (208)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04101 161 RAF 163 (164)
T ss_pred HHh
Confidence 764
No 74
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.98 E-value=1.7e-31 Score=197.22 Aligned_cols=158 Identities=31% Similarity=0.425 Sum_probs=143.0
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|+.++|| +++++..+.|...+.||++ +.+.+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999 4688888999999999987 556777888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|++++++|+.+..|...+.+... +.|+++||||+|+.+++.+..+++..+++..+.+|++|||++|.|++++|+.+++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888876544 7899999999999877778888899999999999999999999999999999998
Q ss_pred HHH
Q psy2518 184 KCL 186 (208)
Q Consensus 184 ~~~ 186 (208)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 754
No 75
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.98 E-value=3.3e-31 Score=200.99 Aligned_cols=164 Identities=23% Similarity=0.348 Sum_probs=147.0
Q ss_pred eeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
+||+++|++++|| ++.++..+.|.. .|.+|+|.++..+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 5899999999999 578888899985 7999999888888999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC----CCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD----QSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~----~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
||++++.+|+++..|+..+....++.|+++|+||+|+.+ .+.+..+++.+++...+++++++||++|.|++++|+.
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999887766899999999999853 2456677888888888999999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy2518 181 LTTKCLSELRQ 191 (208)
Q Consensus 181 i~~~~~~~~~~ 191 (208)
+++.+.+...+
T Consensus 161 i~~~~~~~~~~ 171 (193)
T cd04118 161 VAEDFVSRANN 171 (193)
T ss_pred HHHHHHHhccc
Confidence 99998765543
No 76
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=1.6e-31 Score=199.45 Aligned_cols=155 Identities=22% Similarity=0.341 Sum_probs=139.1
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+|++++|+.++|| ++.++..+.|..++.||.. +.+...+.+++..+.+++|||+|++++..+++.+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 6899999999999 4677778899999999984 677778888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2518 106 STIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKED 171 (208)
Q Consensus 106 d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~ 171 (208)
|++++.||+.+ ..|+..+.+..++.|++++|||+|+.. ++.+..+++..+++..+. +|++|||++|
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 99999999998 479988887656799999999999853 467889999999999998 9999999999
Q ss_pred CCHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTT 183 (208)
Q Consensus 172 ~~i~~~f~~i~~ 183 (208)
.||+++|+.++-
T Consensus 160 ~~v~~lf~~~~~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHh
Confidence 999999998764
No 77
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=3.1e-31 Score=194.95 Aligned_cols=156 Identities=26% Similarity=0.349 Sum_probs=140.6
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|+.++|| +++++..+.|...+.||++. .+.+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6999999999999 56888889999999999984 45677888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|++++.+|+++..|+..+.+... +.|+++|+||+|+.+ +.+..+++.++++..+++++++||++|.|++++|+.+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999998887653 789999999999965 567788888899888999999999999999999999987
Q ss_pred HH
Q psy2518 184 KC 185 (208)
Q Consensus 184 ~~ 185 (208)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 78
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=3.8e-31 Score=195.15 Aligned_cols=158 Identities=29% Similarity=0.354 Sum_probs=142.2
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
.+||+++|+.++|| +++++..+.|...+.+|++ +.+.+...+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 47999999999999 4677888999999999997 44566778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
||++++.+|+.+..|+..+.+... +.|+++++||+|+..++.+..+++.++++..+++++++||++|.|++++|+.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999998877543 789999999999987777888888999998899999999999999999999998
Q ss_pred HHH
Q psy2518 183 TKC 185 (208)
Q Consensus 183 ~~~ 185 (208)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 79
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=1.8e-31 Score=203.24 Aligned_cols=163 Identities=17% Similarity=0.182 Sum_probs=140.0
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc--------hhHhhhcC
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA--------ITKAYYRG 97 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~~~~~~~~ 97 (208)
+||+++|+.++|| +++++..+.|...+.||++.+++...+.+++..+.+++|||+|.+.+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999 4678889999999999998888778888899999999999998654421 23345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCC
Q psy2518 98 AQACVITFSTIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-ALGCRLMRTSVKEDI 172 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~ 172 (208)
+|++++|||+++++||+.+..|+..+.+.. .+.|+++||||+|+...+.+..++++.++. ..+++|++|||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887764 379999999999997777788888877765 558899999999999
Q ss_pred CHHHHHHHHHHHHHHHhh
Q psy2518 173 NVNSIFRYLTTKCLSELR 190 (208)
Q Consensus 173 ~i~~~f~~i~~~~~~~~~ 190 (208)
||+++|+.+++.+..+-+
T Consensus 161 ~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 161 HILLLFKELLISATTRGR 178 (198)
T ss_pred CHHHHHHHHHHHhhccCC
Confidence 999999999998876543
No 80
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.8e-31 Score=198.59 Aligned_cols=161 Identities=23% Similarity=0.211 Sum_probs=142.9
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
+.++||+++|++|+|| ++.++..+.|. .+|.||++.++..+.+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 5789999999999999 57889999999 89999999888888888999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~ 180 (208)
++|||.+++.+|+.+..|+..+... .+.|+++|+||+|+.+++.+..++.+++++.+++ .++++||++|.|++++|+.
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 9999999999999999998876432 3699999999999966555555666778888887 5799999999999999999
Q ss_pred HHHHHH
Q psy2518 181 LTTKCL 186 (208)
Q Consensus 181 i~~~~~ 186 (208)
+++.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 998875
No 81
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=4.4e-31 Score=207.13 Aligned_cols=157 Identities=23% Similarity=0.303 Sum_probs=141.0
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|+.++|| ++.++..+.|.+.|.||++ +++.+.+.+++..+.++||||+|++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999 5788889999999999998 788888999999999999999999999988888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh----------cCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCCCH
Q psy2518 106 STIDRDSFEAAHSWKMKVENE----------CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDINV 174 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~----------~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa~~~~~i 174 (208)
|+++++||+++..|+.++... ..+.|+++|+||+|+.+++.+..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999999888654 12789999999999977678888888887764 3678999999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKC 185 (208)
Q Consensus 175 ~~~f~~i~~~~ 185 (208)
+++|+.+++.+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 82
>KOG4252|consensus
Probab=99.97 E-value=3.5e-33 Score=200.91 Aligned_cols=172 Identities=44% Similarity=0.599 Sum_probs=164.9
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
.++|...+|++++|..++|| .+.+++.+-|...|..|+|+|+....+.++++.+.+.+|||+|+++|..+.+.||++|
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga 93 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA 93 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence 56788999999999999999 5799999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 178 (208)
.+.++||+.+|+.||+.+..|.+++.+..+.+|.++|.||.||.++.++..++++.+++.+++.++.+|++...||.++|
T Consensus 94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 94 QASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred cceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy2518 179 RYLTTKCLSELRQQ 192 (208)
Q Consensus 179 ~~i~~~~~~~~~~~ 192 (208)
..+++++..+.+++
T Consensus 174 ~YLaeK~~q~~kq~ 187 (246)
T KOG4252|consen 174 AYLAEKLTQQKKQS 187 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877663
No 83
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=2.8e-30 Score=198.69 Aligned_cols=168 Identities=27% Similarity=0.409 Sum_probs=146.9
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
...+...+||+++|..++|| ++.++..+.+ ..+.||.|.++....+.+++..+.+.+|||+|+++|..++..+++++
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 45567789999999999999 4566666666 46889999888888888899999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHH-HHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518 99 QACVITFSTIDRDSFEAAHS-WKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 175 (208)
|++++|||++++++|+++.. |...+..... +.|+++|+||+|+...+.+..+++..++...++.|++|||++|.|++
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999965 6666654433 68999999999998777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2518 176 SIFRYLTTKCLSEL 189 (208)
Q Consensus 176 ~~f~~i~~~~~~~~ 189 (208)
++|+.+.+.+....
T Consensus 167 ~l~~~l~~~~~~~~ 180 (211)
T PLN03118 167 QCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987654
No 84
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=1.8e-30 Score=191.09 Aligned_cols=157 Identities=30% Similarity=0.497 Sum_probs=144.9
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|..++|| ++.++..+.|...+.|+.+.++..+.+.+++..+++++|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999 46777889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
|++++++|+.+..|+..+.+..+ +.|+++++||+|+.+++.+..++...+++..+++++++||+++.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999877665 69999999999997767888899999999889999999999999999999998764
No 85
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=3e-30 Score=190.26 Aligned_cols=160 Identities=32% Similarity=0.506 Sum_probs=147.3
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|.+++|| ++.++....+...+.+|++.++....+.+++..+.+++||++|++++......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999 46778788888899999998888888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~-~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
|++++.+++.+..|+..+.... ++.|+++++||+|+...+.+..+.++++++..+++++++||++|.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999988876 489999999999997767788899999999999999999999999999999999988
Q ss_pred HHH
Q psy2518 185 CLS 187 (208)
Q Consensus 185 ~~~ 187 (208)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 86
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=3e-30 Score=199.77 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=141.7
Q ss_pred eeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc-CCcEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR-GAQACVI 103 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~-~~d~ii~ 103 (208)
+||+++|+.|+|| ++.++..+.|. ..+.+|.+.+++.+.+.+++..+.+.+|||+|++. .....+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 5899999999999 46777788887 78889988788889999999999999999999983 33455667 9999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
|||++++.||+.+..|+..+.+... +.|+++|+||+|+...+.++.+++.+++..++++|+++||++|.||+++|+.+
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998877653 79999999999998778888898999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy2518 182 TTKCLSELR 190 (208)
Q Consensus 182 ~~~~~~~~~ 190 (208)
++.+.....
T Consensus 159 ~~~~~~~~~ 167 (221)
T cd04148 159 VRQIRLRRD 167 (221)
T ss_pred HHHHHhhhc
Confidence 998865443
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1.5e-30 Score=192.51 Aligned_cols=157 Identities=29% Similarity=0.355 Sum_probs=137.5
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhh-hcchhHhhhcCCcEEEEEE
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE-FDAITKAYYRGAQACVITF 105 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~~~~~~~~~~d~ii~v~ 105 (208)
||+++|++++|| ++.+++.+.|...+.+|.+.. +.+.+.+++..+.+++|||+|+++ +......+++++|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999 356888889988899998644 456778899999999999999985 3445778899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC-CHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI-NVNSIFRYL 181 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~-~i~~~f~~i 181 (208)
|++++.||+.+..|+..+..... +.|+++||||+|+.+.+.++.+++.++++..+++|++|||++|. ||+++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 99999999999999988877642 79999999999997778889999999999999999999999995 999999999
Q ss_pred HHHHH
Q psy2518 182 TTKCL 186 (208)
Q Consensus 182 ~~~~~ 186 (208)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98653
No 88
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=5e-30 Score=189.09 Aligned_cols=159 Identities=27% Similarity=0.430 Sum_probs=146.9
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
.+||+++|++++|| +++++..+.+.+.+.+|.+.++..+.+.+++..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999 4688888999888999999888889999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
||++++++|+....|+..+..... ..|+++++||+|+...+.++.++...++...++.++++||++|.|++++|+.+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999887763 7899999999999777788888999999999999999999999999999999998
Q ss_pred HH
Q psy2518 184 KC 185 (208)
Q Consensus 184 ~~ 185 (208)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 89
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=5.2e-30 Score=190.32 Aligned_cols=158 Identities=25% Similarity=0.334 Sum_probs=143.1
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|..++|| ++.++..+.|...+.||++ +.+.+.+.+++..+.+++|||+|+++|..+++.+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 6899999999999 4677888999999999998 455778888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
|++++++|+.+..|...+.+... +.|+++++||.|+.+.+.++.+++..+++.++ ++++++||++|.|++++|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998876543 79999999999998778888888888988888 6999999999999999999999
Q ss_pred HHHH
Q psy2518 183 TKCL 186 (208)
Q Consensus 183 ~~~~ 186 (208)
.+++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 8765
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=3.4e-30 Score=192.09 Aligned_cols=157 Identities=22% Similarity=0.324 Sum_probs=139.6
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|..++|| +++++..+.|.+.+.||++ +.+...+.+++..+.+++|||+|++.|...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999 4677888999989999987 555667888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2518 106 STIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSVKED 171 (208)
Q Consensus 106 d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~ 171 (208)
|++++.+|+++. .|+..+.+..++.|+++||||+|+.+. +.++.++++.+++..++ +|++|||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999984 688888776568999999999998542 46888899999999997 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTKC 185 (208)
Q Consensus 172 ~~i~~~f~~i~~~~ 185 (208)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 91
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=3e-29 Score=186.37 Aligned_cols=161 Identities=28% Similarity=0.462 Sum_probs=145.3
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|..++|| +++++..+.|...+.+|++.++..+.+.+++..+.+++||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999 46788889999999999998888888899999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-----CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG-----EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~-----~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f~ 179 (208)
|++++.+|+++..|...+..... +.|+++|+||+|+..++.+..++...+++..+ .+++++||++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999899887766543 78999999999997666777888888888887 6999999999999999999
Q ss_pred HHHHHHHHH
Q psy2518 180 YLTTKCLSE 188 (208)
Q Consensus 180 ~i~~~~~~~ 188 (208)
.+.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988764
No 92
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=3.6e-29 Score=185.61 Aligned_cols=163 Identities=30% Similarity=0.479 Sum_probs=146.2
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
++...+|++++|.+++|| ++.++..+.+.+.+.+|++.++..+.+.+++..+.+.+||++|++.+...+..+++.+|+
T Consensus 3 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 82 (169)
T cd04114 3 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANA 82 (169)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 456789999999999999 456666778888899999988888889999999999999999999999988999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
+++|||++++.+|+.+..|+..+..... ..|+++|+||+|+.+++.+..+..+.+.+.....+++|||++|.|++++|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 83 LILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL 162 (169)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999999999998877665 789999999999987778888888888887788999999999999999999
Q ss_pred HHHHHH
Q psy2518 180 YLTTKC 185 (208)
Q Consensus 180 ~i~~~~ 185 (208)
.+.+.+
T Consensus 163 ~i~~~~ 168 (169)
T cd04114 163 DLACRL 168 (169)
T ss_pred HHHHHh
Confidence 998764
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=3.4e-29 Score=184.01 Aligned_cols=158 Identities=28% Similarity=0.471 Sum_probs=144.1
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|.+++|| +++++..+.+.+.+.+|.+.++....+.+.+..+.+.+||++|++.+..+++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999 46788888888888888887888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
|++++++++.+..|+..+.+..+ +.|+++++||+|+..++.+..++..++++..+++++++||+++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766 78999999999998777888888888999899999999999999999999999876
Q ss_pred H
Q psy2518 185 C 185 (208)
Q Consensus 185 ~ 185 (208)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 94
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=3.3e-29 Score=184.45 Aligned_cols=156 Identities=30% Similarity=0.473 Sum_probs=141.9
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+|++++|..++|| +++++..+.+...+.||.+.++....+.+++..+.+++|||+|++.+..+...+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 6899999999999 46778888888889999998888888888888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|++++.+|+.+..|+..+.+... +.|+++++||+|+.+ +.+..++..+++...+++++++||++|.|++++|+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999999887754 799999999999964 566778889999999999999999999999999999887
Q ss_pred H
Q psy2518 184 K 184 (208)
Q Consensus 184 ~ 184 (208)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 95
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=2.3e-29 Score=187.75 Aligned_cols=157 Identities=29% Similarity=0.464 Sum_probs=137.4
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
.||+++|+.++|| ++.++.++.|.+.|.||++..+ ...+.+++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999 5788889999999999998554 456788899999999999999999998888999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2518 106 STIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSVKED 171 (208)
Q Consensus 106 d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~ 171 (208)
|++++++|+++ ..|+..+.+..++.|+++|+||+|+.+. ..+..++++++++..+. ++++|||++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 99999999998 4688888776668999999999998532 34667888889988876 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTKC 185 (208)
Q Consensus 172 ~~i~~~f~~i~~~~ 185 (208)
.|++++|+.+++.+
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 96
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=3.3e-29 Score=190.74 Aligned_cols=145 Identities=13% Similarity=0.278 Sum_probs=127.1
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-----CeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-----GEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
+||+++|++++|| ++.++..+.|.+.+.||+|.++..+.+.++ +..+.++||||+|+++|..++..+|+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999 578888999999999999988888887774 578999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc--------------------CCCCEEEEEeCCCCCCCCCCCHHH----HHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENEC--------------------GEIPTVLVQNKIDLLDQSVVAPEE----ADLLS 156 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~piivvgnK~Dl~~~~~v~~~~----~~~~~ 156 (208)
+|+|||+++++||+++..|+.++.+.. .+.|+++||||+|+.++|.+..+. ...+|
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987641 268999999999997777666653 44578
Q ss_pred HHhCCeEEEEecCCCC
Q psy2518 157 RALGCRLMRTSVKEDI 172 (208)
Q Consensus 157 ~~~~~~~~e~Sa~~~~ 172 (208)
.+.+++.++.+++++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8899999999998653
No 97
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=8.1e-29 Score=187.12 Aligned_cols=162 Identities=27% Similarity=0.398 Sum_probs=140.6
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
.|++++|+.|+|| +++++..+.|.+.+.+|++.. +...+.+++..+.+.+|||+|++.+......+++++|++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999 457777788988888988744 4456778888899999999999998887778899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCC----------CCCCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2518 106 STIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLD----------QSVVAPEEADLLSRALGC-RLMRTSVKEDIN 173 (208)
Q Consensus 106 d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~----------~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 173 (208)
|++++++|+.+. .|+..+.+..++.|+++||||+|+.+ .+.+..+++..+++..+. +||+|||++|.|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 160 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG 160 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence 999999999995 69999988777899999999999854 356777889999999986 899999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy2518 174 VNSIFRYLTTKCLSELR 190 (208)
Q Consensus 174 i~~~f~~i~~~~~~~~~ 190 (208)
++++|+.+++.++...+
T Consensus 161 v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 161 VDDVFEAATRAALLVRK 177 (187)
T ss_pred HHHHHHHHHHHHhcccC
Confidence 99999999988765443
No 98
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=2.7e-28 Score=179.67 Aligned_cols=158 Identities=30% Similarity=0.363 Sum_probs=141.9
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|.+++|| +++++..+.|...+.+|++ +.+.+....++..+.+.+|||+|++.+...+..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999 4678888999999999987 455677788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|++++.+|.++..|+..+.... .+.|+++|+||+|+...+....++...++..++++++++||++|.|++++|+.+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999999888774 37999999999999765667788888889888999999999999999999999988
Q ss_pred HHH
Q psy2518 184 KCL 186 (208)
Q Consensus 184 ~~~ 186 (208)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=2.4e-29 Score=186.17 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=127.5
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
.|+++|+.++|| ++.++..+.|.+.+.||+|.+. ..+++..+++.+|||+|+++++.++..+++++|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 378999999999 4678888889999999998653 3456677899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH----HHHHHHHHHhCCeEEEEecCC------CCCHHH
Q psy2518 107 TIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP----EEADLLSRALGCRLMRTSVKE------DINVNS 176 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~----~~~~~~~~~~~~~~~e~Sa~~------~~~i~~ 176 (208)
.+++.+|.....|+..+.+..++.|+++|+||+|+...+.+.. .++..++++.++.+++|||++ ++||++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 77 SADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence 9999999999999988876556899999999999976554332 234556666778899999998 999999
Q ss_pred HHHHHHH
Q psy2518 177 IFRYLTT 183 (208)
Q Consensus 177 ~f~~i~~ 183 (208)
+|+.++.
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9998764
No 100
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=7.6e-28 Score=185.62 Aligned_cols=165 Identities=24% Similarity=0.348 Sum_probs=145.4
Q ss_pred ccceeeeEEEecCceEEE-EE-EeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI-TF-STIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk-~~-~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.....+|++++|++|+|| ++ .++..+.|...|.||++.++....+..++..+.+++|||+|++.+..++..+++.+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 345678999999999999 44 4788899999999999999988888889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
+++|||++++.+|..+..|+..+.+...+.|++++|||+|+.+ +.+..+. ..+++..++.++++||++|.|++++|..
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~-~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 162 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD-RQVKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLW 162 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999999987777899999999999854 3444444 4577778889999999999999999999
Q ss_pred HHHHHHHHh
Q psy2518 181 LTTKCLSEL 189 (208)
Q Consensus 181 i~~~~~~~~ 189 (208)
+++.+....
T Consensus 163 ia~~l~~~p 171 (215)
T PTZ00132 163 LARRLTNDP 171 (215)
T ss_pred HHHHHhhcc
Confidence 999887643
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=1.6e-28 Score=182.49 Aligned_cols=151 Identities=16% Similarity=0.239 Sum_probs=122.4
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|..++|| ++.++..+.|. .+.||+|.++. .+. ...+.+++|||+|+++++.+++.+++++|++++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 358999999999999 45666677775 47889987653 222 356889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCCHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-----LGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~Sa~~~~~i~~ 176 (208)
|||++++.+|+++..|+.++.... .+.|+++|+||+|+.+ .+..++++.++.. ..+.++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 999999999999988887776532 3789999999999854 3566776665432 224789999999999999
Q ss_pred HHHHHHH
Q psy2518 177 IFRYLTT 183 (208)
Q Consensus 177 ~f~~i~~ 183 (208)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 102
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=1.2e-27 Score=182.23 Aligned_cols=157 Identities=24% Similarity=0.332 Sum_probs=137.0
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
||+++|+.++|| ++.++..+.|...+.+|++ ++..+.+.+++..+.+++||++|++.+..++..+++++|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 789999999999 5788889999999999986 6677788889988999999999999999989999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCC-CCCCCHHHHHHHHH-HhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLD-QSVVAPEEADLLSR-ALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~-~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
++++.+|+.+..|+..+.+... +.|+++|+||.|+.. .+.+..++..+... ..+.+++++||++|.|++++|+.++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988877654 799999999999855 45666666555543 4457899999999999999999999
Q ss_pred HHHH
Q psy2518 183 TKCL 186 (208)
Q Consensus 183 ~~~~ 186 (208)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8765
No 103
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=6.9e-28 Score=181.16 Aligned_cols=152 Identities=16% Similarity=0.258 Sum_probs=121.7
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|.+++|| ++.++..+.|. .+.||+|.++. . ++...+.+++||++|+++++.++..+++++|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 468999999999999 45666677776 57899986543 2 33456889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC--------eEEEEecCCCCC
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC--------RLMRTSVKEDIN 173 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~--------~~~e~Sa~~~~~ 173 (208)
|||+++++++..+..|+..+.+.. ++.|++|++||+|+.+. +..++ +.+..++ .+++|||++|+|
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~---~~~~l~l~~~~~~~~~~~~~Sa~~g~g 165 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAE---ITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHH---HHHHhCccccCCCceEEEeccCCCCCC
Confidence 999999999999888877765432 37999999999999553 33333 3333333 356899999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKCLS 187 (208)
Q Consensus 174 i~~~f~~i~~~~~~ 187 (208)
|.++|+++++.+.+
T Consensus 166 v~e~~~~l~~~~~~ 179 (181)
T PLN00223 166 LYEGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 104
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=2.2e-27 Score=174.05 Aligned_cols=155 Identities=30% Similarity=0.482 Sum_probs=141.0
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
||+++|+.++|| ++.++..+.+...+.+|.+ +...+.+.+++..+.+++||++|++.+..++..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 789999999999 4567777889999999988 7777888888889999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
++++++++++..|...+.+... ..|+++++||+|+.+.+.++.+++.++++.++++++++||+++.|++++|+.+++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999988887765 89999999999997767788899999999988999999999999999999999875
No 105
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.95 E-value=2.5e-27 Score=172.92 Aligned_cols=155 Identities=34% Similarity=0.545 Sum_probs=142.5
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|..++|| +++++..+.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999 46778889999989999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~-~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
|++++++++.+..|+..+.... ...|+++++||+|+........++..+++...+++++++||+++.|++++|+.++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999999999999999998887 4799999999999975567788999999998889999999999999999999876
No 106
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.95 E-value=8e-28 Score=178.82 Aligned_cols=152 Identities=18% Similarity=0.274 Sum_probs=125.5
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
||+++|..++|| ++.++..+.|.. +.||+|.++. . ++...+.+++|||+|++.+...+..+++++|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 689999999999 457777777764 8899886653 2 33356789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC------CeEEEEecCCCCCHHHHH
Q psy2518 107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG------CRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~------~~~~e~Sa~~~~~i~~~f 178 (208)
++++++|.++..|+..+.+... +.|+++++||+|+.. .++.+++++++...+ +.+++|||++|.||+++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 9999999999999988875432 689999999999953 467777777664322 267899999999999999
Q ss_pred HHHHHHHHH
Q psy2518 179 RYLTTKCLS 187 (208)
Q Consensus 179 ~~i~~~~~~ 187 (208)
+++++.+..
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999887654
No 107
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.95 E-value=2.1e-27 Score=176.25 Aligned_cols=155 Identities=28% Similarity=0.434 Sum_probs=135.7
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|..++|| +++++..+.|...+.||+. +.....+..++..+.+++|||+|++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999 4678888888888888886 555666778899999999999999998888888899999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCCC-----------CCCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2518 106 STIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQS-----------VVAPEEADLLSRALGC-RLMRTSVKEDI 172 (208)
Q Consensus 106 d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~~-----------~v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 172 (208)
|++++.+|... ..|+..+....++.|+++|+||+|+.+.+ .+..+++..++..+++ +|+++||++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 99999999887 56888888777789999999999986543 4567888889999988 99999999999
Q ss_pred CHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTT 183 (208)
Q Consensus 173 ~i~~~f~~i~~ 183 (208)
|++++|+.+++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.5e-27 Score=176.80 Aligned_cols=158 Identities=20% Similarity=0.213 Sum_probs=127.2
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+|++++|++++|| +++++..+.|.+.++++.+ + ......+++..+.+++|||+|++.+...+..+++++|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-E-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-c-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999 5788888999877665543 2 2444566788899999999999988877788899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHHHHHHHHHhC-C-eEEEEecCCCCCHHHHHHH
Q psy2518 106 STIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEEADLLSRALG-C-RLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 106 d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~~~~~~~~~~-~-~~~e~Sa~~~~~i~~~f~~ 180 (208)
|++++.+|+.+. .|+..+....++.|+++|+||+|+.+.+.. .+++...++..++ . ++++|||++|.|++++|+.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 999999999984 688888776668999999999999664432 2334444444443 3 8999999999999999999
Q ss_pred HHHHHHH
Q psy2518 181 LTTKCLS 187 (208)
Q Consensus 181 i~~~~~~ 187 (208)
+.+.++.
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9887753
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.95 E-value=3.5e-27 Score=177.59 Aligned_cols=162 Identities=15% Similarity=0.209 Sum_probs=131.9
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
-+||+++|+.++|| ++.++..+.|... .||.|.+.....+.. ++..+.+++|||+|++++..++..+++++|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999 4677778888754 688887776666655 4577899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH--h----CCeEEEEecCCCCCHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA--L----GCRLMRTSVKEDINVN 175 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~--~----~~~~~e~Sa~~~~~i~ 175 (208)
|||++++.+++.+..|+..+.+... +.|+++|+||+|+.+ .+..++...+... . +++++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 9999999999999889888776543 799999999999853 3455555544431 1 2468899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy2518 176 SIFRYLTTKCLSELRQ 191 (208)
Q Consensus 176 ~~f~~i~~~~~~~~~~ 191 (208)
++|+.+++.+.+.++.
T Consensus 160 ~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 160 EGLEKLYEMILKRRKM 175 (183)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999988765543
No 110
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=1.1e-27 Score=176.45 Aligned_cols=149 Identities=15% Similarity=0.244 Sum_probs=117.3
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|..++|| ++.++..+.|. .+.||+|.++. .+. ...+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 4899999999999 46777678887 47899986653 233 35688999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHH-HHHHHH----HhCCeEEEEecCCCCCHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEE-ADLLSR----ALGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~-~~~~~~----~~~~~~~e~Sa~~~~~i~~~f 178 (208)
|++++.+|+.+.+|+..+.... .+.|+++++||+|+.+. ...++ ...+.. ..++.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 9999999999988877765432 26899999999999542 23333 232221 123357899999999999999
Q ss_pred HHHHH
Q psy2518 179 RYLTT 183 (208)
Q Consensus 179 ~~i~~ 183 (208)
+++.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 98864
No 111
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=4.6e-28 Score=181.17 Aligned_cols=153 Identities=15% Similarity=0.208 Sum_probs=120.7
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|..++|| ++.++..+.|. .+.||+|.++.. +.. ..+.+++|||+|++++..++..+++++|++++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 368999999999999 45667677775 478999876542 333 45789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~ 176 (208)
|||++++++++....|+..+.+.. .+.|++||+||+|+.+. .+.++...... ...+.++++||++|.|+++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 999999999999988888775432 37899999999999543 23333332221 1223577999999999999
Q ss_pred HHHHHHHHH
Q psy2518 177 IFRYLTTKC 185 (208)
Q Consensus 177 ~f~~i~~~~ 185 (208)
+|+++.+.+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999987764
No 112
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=190.89 Aligned_cols=138 Identities=14% Similarity=0.190 Sum_probs=121.7
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-------------CeEEEEEEEeCCChhhhc
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-------------GEEVRLMLWDTAGQEEFD 88 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~g~~~~~ 88 (208)
..+.+||+++|++++|| ++.++..+.|...+.+|+|.++..+.+.++ ++.+.++||||+|+++|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 45679999999999999 467888999999999999999888878775 357899999999999999
Q ss_pred chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-------------CCCCEEEEEeCCCCCCCC---C---CCH
Q psy2518 89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC-------------GEIPTVLVQNKIDLLDQS---V---VAP 149 (208)
Q Consensus 89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~piivvgnK~Dl~~~~---~---v~~ 149 (208)
.++..++++++++|+|||++++.||+++..|+..+.... .++|++|||||+||.+++ . +..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 999999999999999999999999999999999998763 148999999999996542 3 368
Q ss_pred HHHHHHHHHhCC
Q psy2518 150 EEADLLSRALGC 161 (208)
Q Consensus 150 ~~~~~~~~~~~~ 161 (208)
++++++|+++++
T Consensus 178 e~a~~~A~~~g~ 189 (334)
T PLN00023 178 DAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHcCC
Confidence 999999999875
No 113
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.95 E-value=7.8e-27 Score=174.98 Aligned_cols=162 Identities=25% Similarity=0.353 Sum_probs=142.7
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
.||+++|..|+|| ++.++....|...+.||.+..+ ...+.+++..+.+++|||+|++++..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999 4677778888888889887444 567788888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|+++..+|+.+..|+..+.+... +.|+++|+||+|+...+.+..++...+++.++.+++++||+++.|+.++|.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877543 6899999999999776777777888888888899999999999999999999999
Q ss_pred HHHHHhh
Q psy2518 184 KCLSELR 190 (208)
Q Consensus 184 ~~~~~~~ 190 (208)
.+.....
T Consensus 161 ~~~~~~~ 167 (180)
T cd04137 161 EIEKVEN 167 (180)
T ss_pred HHHHhcC
Confidence 8876543
No 114
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=5.7e-27 Score=176.30 Aligned_cols=157 Identities=12% Similarity=0.194 Sum_probs=121.8
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|+.++|| ++.++..+.|.. +.||+|.++. .+. ...+.+++|||+|+++++.++..+++++|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 358999999999999 456666777865 7789986653 333 356889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~ 176 (208)
|||++++++|.....|+..+.+.. .+.|+++|+||+|+.+ ....++...... ...+.++++||++|.|+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 999999999999887777765432 3689999999999854 233333322211 1123567999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2518 177 IFRYLTTKCLSEL 189 (208)
Q Consensus 177 ~f~~i~~~~~~~~ 189 (208)
+|+++.+.+.+++
T Consensus 169 ~~~~l~~~i~~~~ 181 (182)
T PTZ00133 169 GLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998876543
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.94 E-value=1.8e-26 Score=172.12 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=122.2
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.-...+||+++|..++|| +++++..+ +...+.||+|.. ...+.++ .+.+.+|||+|++.++.++..+++++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 345568999999999999 35555555 445678888744 3445554 4779999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCC
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDIN 173 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~ 173 (208)
+++|||.+++.+|.+...|+..+.+.. .+.|+++|+||+|+.+. ...+++..+.. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 999999999999999988888775432 37999999999999553 34555555543 2356899999999999
Q ss_pred HHHHHHHHHH
Q psy2518 174 VNSIFRYLTT 183 (208)
Q Consensus 174 i~~~f~~i~~ 183 (208)
++++|+++++
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.93 E-value=1.1e-25 Score=168.19 Aligned_cols=151 Identities=15% Similarity=0.232 Sum_probs=119.5
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|.+++|| ++.++..+.|.. +.||+|.++. .+.+ ..+.+.+|||+|++.+...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 468999999999999 466777788875 6788886643 2333 35789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHH-HHHHH----HHhCCeEEEEecCCCCCHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEE-ADLLS----RALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~-~~~~~----~~~~~~~~e~Sa~~~~~i~~ 176 (208)
|||.++++++.....|+..+.+... +.|+++++||+|+.+ ..+.++ ...+. +..++++++|||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 9999999999988887777765432 689999999999854 233333 23322 22345789999999999999
Q ss_pred HHHHHHH
Q psy2518 177 IFRYLTT 183 (208)
Q Consensus 177 ~f~~i~~ 183 (208)
+|+++.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 117
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.93 E-value=1.9e-25 Score=164.32 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=115.8
Q ss_pred eEEEecCceEEE--EEEeeecCc-cccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDS-FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+|+++|+.++|| ++.++..+. +...+.||+|..+. .+ ....+.+++|||+|++++..++..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999 456666665 46778899985432 22 345678999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~ 176 (208)
|.+++.+|..+..|+..+.+.. .+.|+++|+||+|+.+.. ..++...... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999998888888776542 279999999999985432 2232222211 1123689999999999999
Q ss_pred HHHHHHH
Q psy2518 177 IFRYLTT 183 (208)
Q Consensus 177 ~f~~i~~ 183 (208)
+|+++.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.93 E-value=6e-26 Score=168.47 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=116.9
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
+|+++|.+++|| +++++. +.|...+.||+|.. ...+.. ..+.+++||++|++.++.++..+++++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~-~~~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQ-GEIPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHh-CCCCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 478999999999 344444 44888899999854 334444 45779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHH------HHHHHHhC--CeEEEEecCCC-----
Q psy2518 107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEA------DLLSRALG--CRLMRTSVKED----- 171 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~------~~~~~~~~--~~~~e~Sa~~~----- 171 (208)
++++.+|+++..|+..+.+... +.|+++|+||+|+.+.+. .++. ..++++.+ +.+++|||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999999998876543 789999999999965432 2221 22332333 46788999998
Q ss_pred -CCHHHHHHHHHH
Q psy2518 172 -INVNSIFRYLTT 183 (208)
Q Consensus 172 -~~i~~~f~~i~~ 183 (208)
.|+.+.|++|..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999864
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.92 E-value=4.9e-25 Score=161.96 Aligned_cols=149 Identities=16% Similarity=0.237 Sum_probs=116.8
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
+|+++|.+++|| +++++..+.|.. +.||++.++ ..+.. +..+.+.+|||+|++.+...+..+++++|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999 467777887764 468887554 33333 346789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHH------HHhCCeEEEEecCCCCCHHHHH
Q psy2518 107 TIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLS------RALGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~------~~~~~~~~e~Sa~~~~~i~~~f 178 (208)
.+++.++..+..|+..+.+.. .+.|+++|+||+|+... ...++..... ...++++++|||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999999999988888876543 37999999999998542 2333333221 1223478999999999999999
Q ss_pred HHHHH
Q psy2518 179 RYLTT 183 (208)
Q Consensus 179 ~~i~~ 183 (208)
+.+.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 98864
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.92 E-value=2.2e-25 Score=163.74 Aligned_cols=148 Identities=14% Similarity=0.184 Sum_probs=112.2
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
||+++|..++|| ++.++..+.+. .+.||++.++. . +++..+.+++|||+|++.+..++..+++++|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 689999999999 45666566665 45788876543 2 33356789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHHHHHH
Q psy2518 107 TIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
++++.++.....|+..+.+.. .+.|+++|+||+|+.+.. ..++...... ..+.+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 999998887766665554322 278999999999985422 2233222111 1234699999999999999999
Q ss_pred HHHH
Q psy2518 180 YLTT 183 (208)
Q Consensus 180 ~i~~ 183 (208)
++++
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.92 E-value=1.4e-24 Score=164.11 Aligned_cols=154 Identities=18% Similarity=0.258 Sum_probs=124.7
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
+.+.+|++++|.+++|| ++.++..+.+ ..+.||++.. ...+.+++ +.+.+||++|++.+...+..+++.+|++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 35679999999999999 4566666666 4578888754 34455554 5689999999999988899999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH----------------hCCeE
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA----------------LGCRL 163 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~----------------~~~~~ 163 (208)
++|+|.+++.+|.....|+..+.+... +.|+++++||+|+.. .+..++.+++... ..+++
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 999999999999988888888776443 699999999999843 5667777766643 12468
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q psy2518 164 MRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 164 ~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
++|||++|.|++++|+++.+.
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEeEecCCCChHHHHHHHHhh
Confidence 999999999999999999865
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.91 E-value=1.2e-24 Score=159.62 Aligned_cols=148 Identities=17% Similarity=0.222 Sum_probs=116.9
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
||+++|..++|| ++.++..+. ...+.+|++.... .+.++ .+.+.+||++|++.+..++..+++++|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 789999999999 456666665 4567788875543 33333 5779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCCHHHHHH
Q psy2518 107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA-----LGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
+++++++.....|+..+.+... ..|+++++||+|+.... ..++..+.... ..++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 9999999999888888766543 79999999999986533 33333333322 235899999999999999999
Q ss_pred HHHH
Q psy2518 180 YLTT 183 (208)
Q Consensus 180 ~i~~ 183 (208)
.+..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 123
>KOG0096|consensus
Probab=99.91 E-value=6.9e-25 Score=159.46 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=145.4
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
.-.+|++++|+.|.|| ...+...+.|+.+|.+|+|++.+...+.-+...+++..|||+|+|.+..+...+|-.+.+++
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 4589999999999999 46888899999999999999988887777777899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
++||++.+..+.++..|...+.+.+.++||+++|||.|..+ +.+ ......+-+..+++|+++||+++.|.+..|.+++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~-r~~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA-RKV-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc-ccc-ccccceeeecccceeEEeecccccccccchHHHh
Confidence 99999999999999999999999999999999999999855 332 2333446677789999999999999999999999
Q ss_pred HHHHHHhh
Q psy2518 183 TKCLSELR 190 (208)
Q Consensus 183 ~~~~~~~~ 190 (208)
+++.....
T Consensus 166 rKl~G~p~ 173 (216)
T KOG0096|consen 166 RKLTGDPS 173 (216)
T ss_pred hhhcCCCC
Confidence 99865443
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.91 E-value=4.8e-24 Score=157.75 Aligned_cols=149 Identities=22% Similarity=0.322 Sum_probs=116.1
Q ss_pred eEEEecCceEEE--EEEeeec------CccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 29 KAYYRGAQACVI--TFSTIDR------DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
+|+++|..++|| +++++.. +.+...+.||++.++. .+.++ ...+.+|||+|++.+..++..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999 2344332 2234567788876654 33444 5679999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-------hCCeEEEEecCCC
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA-------LGCRLMRTSVKED 171 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~e~Sa~~~ 171 (208)
+++|+|.++++++.....|+..+.+... +.|+++++||+|+.. ....++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 9999999999999998888888766532 799999999999854 3444555544433 2358999999999
Q ss_pred CCHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTT 183 (208)
Q Consensus 172 ~~i~~~f~~i~~ 183 (208)
.|++++|+++.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 125
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.90 E-value=6.8e-23 Score=158.15 Aligned_cols=165 Identities=28% Similarity=0.371 Sum_probs=138.4
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|+.|+|| ++.++..+.|.+.+.+|++..+........+..+++.+|||+|+++++.++..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 349999999999999 468899999999999999988888888887779999999999999999999999999999999
Q ss_pred EEeCCChh-hHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCC------------CCCHHHHHHHHHHh---CCeEEEE
Q psy2518 104 TFSTIDRD-SFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQS------------VVAPEEADLLSRAL---GCRLMRT 166 (208)
Q Consensus 104 v~d~~~~~-s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~------------~v~~~~~~~~~~~~---~~~~~e~ 166 (208)
|||.++.. +++....|...+....+ ..|+++++||+|+...+ ....+.....+... ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 99999954 55556899999988875 79999999999997653 33333333333333 2358999
Q ss_pred ecC--CCCCHHHHHHHHHHHHHHHhh
Q psy2518 167 SVK--EDINVNSIFRYLTTKCLSELR 190 (208)
Q Consensus 167 Sa~--~~~~i~~~f~~i~~~~~~~~~ 190 (208)
||+ ++.++.++|..+...+.....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 999 999999999999999876543
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.90 E-value=2e-23 Score=157.29 Aligned_cols=154 Identities=14% Similarity=0.212 Sum_probs=120.0
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
+.+.+||+++|..++|| +++++..+.|. .+.||.+... ..+.++ .+++.+||++|++.++.++..+++++|++
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 35569999999999999 45666666664 4567776432 233333 46789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH------------hCCeEEEEe
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRA------------LGCRLMRTS 167 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~------------~~~~~~e~S 167 (208)
++|+|+++++++.....|+..+.+.. .+.|+++|+||+|+.. .++.++..+.... ....+++||
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S 166 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS 166 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence 99999999999999888888776542 3789999999999843 4556655543311 123689999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy2518 168 VKEDINVNSIFRYLTTK 184 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~ 184 (208)
|++|.|++++++++.++
T Consensus 167 a~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 167 VVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cccCCChHHHHHHHHhh
Confidence 99999999999999764
No 127
>KOG1673|consensus
Probab=99.90 E-value=2.9e-23 Score=146.40 Aligned_cols=170 Identities=16% Similarity=0.241 Sum_probs=146.8
Q ss_pred cCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc
Q psy2518 19 AGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR 96 (208)
Q Consensus 19 ~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~ 96 (208)
.+..+-...+||-++|++.+|| +...+.++.+++++..|.|+.+..+++.+.|..+.+.|||.+|++++..+.+...+
T Consensus 12 ~~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~ 91 (205)
T KOG1673|consen 12 IPAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACK 91 (205)
T ss_pred CcccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeec
Confidence 3344556789999999999999 45678899999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC-----CCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ-----SVVAPEEADLLSRALGCRLMRTSVKED 171 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 171 (208)
++-+++|+||++.+.+++.+..|+.+........-.|+||+|.|+--. ..--..+++.+|+.++...|.||+..+
T Consensus 92 dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~s 171 (205)
T KOG1673|consen 92 DSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHS 171 (205)
T ss_pred CcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccc
Confidence 999999999999999999999999998877775556778999996211 111234567788888999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTKCLSE 188 (208)
Q Consensus 172 ~~i~~~f~~i~~~~~~~ 188 (208)
.||+.+|.-+.-++++.
T Consensus 172 INv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 172 INVQKIFKIVLAKLFNL 188 (205)
T ss_pred ccHHHHHHHHHHHHhCC
Confidence 99999999998888764
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=4.5e-23 Score=154.28 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=113.6
Q ss_pred eEEEecCceEEE--EEEeeecC-------ccccccccc------cccceeeEEEEE-----CCeEEEEEEEeCCChhhhc
Q psy2518 29 KAYYRGAQACVI--TFSTIDRD-------SFEAAHSWK------MKVSIKRTIKEC-----EGEEVRLMLWDTAGQEEFD 88 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~-------~f~~~~~~t------~~~~~~~~~~~~-----~~~~~~l~i~Dt~g~~~~~ 88 (208)
+|.++|..++|| ++.++... .+...+.+| .|+.+..+.+.. ++..+.+++|||+|++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999 34444432 233344443 344554444333 6778999999999999999
Q ss_pred chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---eEEE
Q psy2518 89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC---RLMR 165 (208)
Q Consensus 89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~---~~~e 165 (208)
..+..+++.+|++++|||+++..+++....|..... .+.|+++|+||+|+.+.+ ..+...++++.+++ .+++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAIL 156 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEEE
Confidence 999999999999999999999877777666654332 268999999999985422 23334566666676 4899
Q ss_pred EecCCCCCHHHHHHHHHHHH
Q psy2518 166 TSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 166 ~Sa~~~~~i~~~f~~i~~~~ 185 (208)
+||++|.|++++|+.+.+.+
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 157 VSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred eeccCCCCHHHHHHHHHhhC
Confidence 99999999999999998764
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.89 E-value=3.7e-23 Score=150.91 Aligned_cols=149 Identities=22% Similarity=0.275 Sum_probs=118.5
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
.|.++|.+++|| +++++....|...+.||++.++.. +..+ .+.+.+||++|++.+..++..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 378999999999 568888899999999999876643 3333 3789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCCHHHHHH
Q psy2518 107 TIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLS-----RALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
++++.++.....|+..+.... .+.|+++|+||+|+.+... .++..... ...+.+++++||++|.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 999999988877777765533 2789999999999855322 22222111 11235789999999999999999
Q ss_pred HHHH
Q psy2518 180 YLTT 183 (208)
Q Consensus 180 ~i~~ 183 (208)
.+.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9865
No 130
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.89 E-value=9.7e-23 Score=152.35 Aligned_cols=155 Identities=19% Similarity=0.278 Sum_probs=122.8
Q ss_pred cceeeeEEEecCceEEE-E-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI-T-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk-~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
..+.+||+++|..++|| + +.++..+.+ ..+.||.|... ..+.++ .+.+.+||.+|+..++.+|+.+++++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~-~~~~pT~g~~~--~~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEI-SETIPTIGFNI--EEIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSE-EEEEEESSEEE--EEEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccc-cccCccccccc--ceeeeC--cEEEEEEeccccccccccceeecccccee
Confidence 36789999999999999 3 444444443 45889998543 344444 45689999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH------hCCeEEEEecCCCCC
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA------LGCRLMRTSVKEDIN 173 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~------~~~~~~e~Sa~~~~~ 173 (208)
++|+|.++++.+......+..+..... +.|+++++||+|+.+ ..+.++....... ..+.++.|||++|.|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 999999999999998888877766533 799999999999854 4566666654322 234689999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKC 185 (208)
Q Consensus 174 i~~~f~~i~~~~ 185 (208)
+.+.|++|.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999998864
No 131
>KOG4423|consensus
Probab=99.88 E-value=4.3e-25 Score=160.06 Aligned_cols=166 Identities=25% Similarity=0.370 Sum_probs=145.8
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCe-EEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGE-EVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
..+++|+.++|+.++|| +..|+....|...|..|+|+++..+.+..+.. .+++++||.+||++|..+...||+.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 46799999999999999 46888899999999999999999999988654 5689999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCEEEEEeCCCCCCCCCCC-HHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG-----EIPTVLVQNKIDLLDQSVVA-PEEADLLSRALGC-RLMRTSVKEDIN 173 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~piivvgnK~Dl~~~~~v~-~~~~~~~~~~~~~-~~~e~Sa~~~~~ 173 (208)
..+|||+++...|+...+|.+++..... +.|+++.+||||+.+..... .....++++++|+ ..+|+|+|.+.|
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 9999999999999999999998854432 68889999999986543222 3667788999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy2518 174 VNSIFRYLTTKCLSEL 189 (208)
Q Consensus 174 i~~~f~~i~~~~~~~~ 189 (208)
+.|+-..+++.++..-
T Consensus 182 i~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 182 IPEAQRELVEKILVND 197 (229)
T ss_pred hhHHHHHHHHHHHhhc
Confidence 9999999999887654
No 132
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.88 E-value=1.3e-22 Score=146.42 Aligned_cols=132 Identities=18% Similarity=0.231 Sum_probs=101.2
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh-----hhhcchhHhhhcCCcEE
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ-----EEFDAITKAYYRGAQAC 101 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~-----~~~~~~~~~~~~~~d~i 101 (208)
||+++|++++|| +++++..+.+ .+.+|+++++. + .+|||+|+ +.+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999 4677766665 35666654432 1 68999997 33444433 58999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~ 180 (208)
++|||++++.++.. ..|.... ..|+++|+||+|+.+ +....+++.++++..+. +++++||++|.|++++|+.
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999998865 3454322 249999999999864 44566777888888877 8999999999999999998
Q ss_pred HH
Q psy2518 181 LT 182 (208)
Q Consensus 181 i~ 182 (208)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 133
>KOG0073|consensus
Probab=99.87 E-value=2.8e-21 Score=137.55 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=124.5
Q ss_pred ceeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 25 DAITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
.+.+.|.++|-.++|| ++..-+.+.-.+...||.|.+ .++ +..+.+++++||.+||...++.|+.||..+|++|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~--Ikt--l~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQ--IKT--LEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccccCCcccee--eEE--EEecceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 4589999999999999 333223344467788888743 333 34466779999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHH------HHHHHHHhCCeEEEEecCCCCCHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEE------ADLLSRALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~------~~~~~~~~~~~~~e~Sa~~~~~i~ 175 (208)
|+|.+|+..++.....+..+..... ..|+++++||.|+.. .+..++ .+.+++..+++.+-|||.+|+++.
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 9999999999988777766655433 689999999999953 233332 234556778899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCLS 187 (208)
Q Consensus 176 ~~f~~i~~~~~~ 187 (208)
+.|.++...+..
T Consensus 168 ~gidWL~~~l~~ 179 (185)
T KOG0073|consen 168 EGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.87 E-value=9.9e-22 Score=146.20 Aligned_cols=149 Identities=16% Similarity=0.287 Sum_probs=112.9
Q ss_pred ceeeeEEEecCceEEE-E-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI-T-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk-~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+|++++|.+|+|| + +.++.+..+ ..+.||.|..+ ..+..++ ..+.+||++|+..+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 4479999999999999 3 444444444 45778887443 3444554 56899999999998888899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC--------eEEEEecCCCC
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC--------RLMRTSVKEDI 172 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~--------~~~e~Sa~~~~ 172 (208)
+|+|.++..++.....|+..+.+... ..|+++++||+|+.+.. ..+ .+....++ +++++||++|.
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~---~i~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAE---EIAEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHH---HHHHHcCCcccCCCeEEEEEeECCCCC
Confidence 99999999999888777766654432 79999999999985422 222 23333332 47899999999
Q ss_pred CHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTT 183 (208)
Q Consensus 173 ~i~~~f~~i~~ 183 (208)
|++++|+++++
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999875
No 135
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.87 E-value=1.1e-21 Score=145.12 Aligned_cols=151 Identities=16% Similarity=0.100 Sum_probs=104.5
Q ss_pred eEEEecCceEEE--EEEeeecCccccc-cc-cccccceeeEEEEECCeEEEEEEEeCCChhhhc---------chhHhhh
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAA-HS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD---------AITKAYY 95 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~-~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~~~~ 95 (208)
+|+++|.+++|| +++++..+.+... ++ +|.+ ..... .....+.+++|||+|+.... .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~--~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKS--LFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccc--eeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence 689999999999 4666667666432 21 2322 22222 22245789999999974211 0011112
Q ss_pred cCCcEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518 96 RGAQACVITFSTIDRDSF--EAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN 173 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 173 (208)
..+|++++|+|++++.++ +....|+..+.+...+.|+++|+||+|+...+.+.. ..++++..+.++++|||++|.|
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 346899999999987654 556678888876555799999999999965443332 4555555567899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKC 185 (208)
Q Consensus 174 i~~~f~~i~~~~ 185 (208)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 136
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.87 E-value=2.7e-21 Score=140.52 Aligned_cols=154 Identities=23% Similarity=0.315 Sum_probs=127.2
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
.+||+++|.+++|| +++++..+.+...+.++.+.++....+..++..+.+.+||++|+..+..++..+.+.+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999 4566667778888888998888887788888888999999999999999999999999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 105 FSTIDR-DSFEAAH-SWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 105 ~d~~~~-~s~~~~~-~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
+|+... .++.... .|...+.+... +.|+++++||+|+...+ ...+....+......+++++||++|.|+.++|+.+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999887 7777664 77777776666 78999999999996543 34444444444445689999999999999999875
No 137
>KOG0070|consensus
Probab=99.86 E-value=1e-20 Score=137.84 Aligned_cols=156 Identities=15% Similarity=0.221 Sum_probs=123.9
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
....+|+++|-.++|| .+.++..+.+... .||+|.... . +..+++.+.+||.+|+++++.+|+.|+++.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE--~--v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE--T--VEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee--E--EEEcceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 3468999999999999 3455556666555 999984433 2 3334888999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCCHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA-----LGCRLMRTSVKEDINVN 175 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~Sa~~~~~i~ 175 (208)
+|.|.+|++-+...+.-+..+..+.. +.|+++.+||.|++. ..+..+..+.... ....+..|+|.+|+|+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 99999999999998877777776665 899999999999955 3444444333322 33467899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCLS 187 (208)
Q Consensus 176 ~~f~~i~~~~~~ 187 (208)
|.++++.+.+..
T Consensus 168 egl~wl~~~~~~ 179 (181)
T KOG0070|consen 168 EGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHhc
Confidence 999999888753
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=4.4e-21 Score=141.10 Aligned_cols=149 Identities=16% Similarity=0.151 Sum_probs=101.2
Q ss_pred eEEEecCceEEE--EEEeeec---CccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 29 KAYYRGAQACVI--TFSTIDR---DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~---~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
-|.++|..++|| +++++.. +.+.+++.++...+.....+.+.+ ...+++|||||++++......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 478999999999 3455543 445544444444444444555542 3579999999999987767778899999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC--CCCHHHHHHHHHH---hCCeEEEEecCCCCCHH
Q psy2518 104 TFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS--VVAPEEADLLSRA---LGCRLMRTSVKEDINVN 175 (208)
Q Consensus 104 v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~--~v~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~ 175 (208)
|+|+++ +++++.+. .+. .....|+++++||+|+.++. ....++..+..+. .+.+++++||++|.|++
T Consensus 81 V~d~~~~~~~~~~~~~~----~~~-~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 81 VVAADEGIMPQTREHLE----ILE-LLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EEECCCCccHhHHHHHH----HHH-HhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHH
Confidence 999987 44444332 111 11234999999999995432 1112333333333 35689999999999999
Q ss_pred HHHHHHHH
Q psy2518 176 SIFRYLTT 183 (208)
Q Consensus 176 ~~f~~i~~ 183 (208)
++|+.+.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998754
No 139
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.85 E-value=8.4e-21 Score=140.67 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=104.2
Q ss_pred eEEEecCceEEE--EEEeeecCcccc-c-cccccccceeeEEEEECCeEEEEEEEeCCChh----hhcchhHhh---hcC
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEA-A-HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE----EFDAITKAY---YRG 97 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~-~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~----~~~~~~~~~---~~~ 97 (208)
.|+++|..++|| +++++....... . ..+|. +.....+.+++ ...+.+|||||.. ....+...+ ++.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~--~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTL--VPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCcccc--CCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 478999999999 344444333211 1 11222 11112223333 2478999999963 222333444 346
Q ss_pred CcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCC
Q psy2518 98 AQACVITFSTIDR-DSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDI 172 (208)
Q Consensus 98 ~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa~~~~ 172 (208)
+|++++|+|++++ ++++.+..|...+....+ ..|+++|+||+|+.+...+ .+....+... .+.+++++||+++.
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGE 157 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCC
Confidence 9999999999999 799999999888876642 6899999999999664443 3444445555 36789999999999
Q ss_pred CHHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTTK 184 (208)
Q Consensus 173 ~i~~~f~~i~~~ 184 (208)
|++++|+.+.+.
T Consensus 158 gi~~l~~~i~~~ 169 (170)
T cd01898 158 GLDELLRKLAEL 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999998865
No 140
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.83 E-value=1.3e-20 Score=143.08 Aligned_cols=147 Identities=13% Similarity=0.092 Sum_probs=106.4
Q ss_pred eeeEEEecCceEEE--EEEeeec--Ccccccc------------ccccccceeeEEEEECCeEEEEEEEeCCChhhhcch
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDR--DSFEAAH------------SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI 90 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~--~~f~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 90 (208)
..+|+++|.+++|| ++.++.. +.|...+ .++.|..+..+...++.+.+.+++|||+|+++|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 45899999999999 4565655 5665543 345666677777777777889999999999999999
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HhCCe
Q psy2518 91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV-VAPEEADLLSR-------ALGCR 162 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~-v~~~~~~~~~~-------~~~~~ 162 (208)
...+++.+|++++|||+++.. +.....|+..... .+.|+++|+||+|+...+. ...++..++.. ..+++
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 999999999999999998742 3333344444332 2689999999999954322 11233344432 23678
Q ss_pred EEEEecCCCCCHHH
Q psy2518 163 LMRTSVKEDINVNS 176 (208)
Q Consensus 163 ~~e~Sa~~~~~i~~ 176 (208)
++++||++|.|+.+
T Consensus 159 iv~~Sa~~g~~~~~ 172 (194)
T cd01891 159 VLYASAKNGWASLN 172 (194)
T ss_pred EEEeehhccccccc
Confidence 99999999977643
No 141
>KOG3883|consensus
Probab=99.83 E-value=5.7e-20 Score=129.54 Aligned_cols=167 Identities=19% Similarity=0.278 Sum_probs=137.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeecC--ccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhh-cchhHhhhcCC
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRD--SFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEF-DAITKAYYRGA 98 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~--~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~-~~~~~~~~~~~ 98 (208)
.+.-|++++|-.++|| .+.++..+ .-..++.||+. |++.-.+.. .|..-.+.++||+|...+ ..+-+.|++-+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 4578999999999999 23333333 33456889997 666666655 466678999999998777 45677889999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
|++++|||..+++||+.+......+.+... ..||+++|||+|+.+++++..+-+..||+.-.++.+|++|.+...+-+
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhh
Confidence 999999999999999887555555555544 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy2518 177 IFRYLTTKCLSELRQQ 192 (208)
Q Consensus 177 ~f~~i~~~~~~~~~~~ 192 (208)
.|..+...+...+.+.
T Consensus 166 pf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 166 PFTYLASRLHQPQSKS 181 (198)
T ss_pred HHHHHHHhccCCcccc
Confidence 9999999987665543
No 142
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.83 E-value=2.5e-20 Score=142.49 Aligned_cols=151 Identities=18% Similarity=0.130 Sum_probs=107.2
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccc--cccccccceeeEEEEECCeEEEEEEEeCCChhh---------hcchh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAA--HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE---------FDAIT 91 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~---------~~~~~ 91 (208)
+..++|+++|..|+|| +++++....+... +.+|+. .....+.+++. ..+.+|||+|... +...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~- 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST- 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-
Confidence 5578999999999999 3455555554322 344543 33444445443 2689999999722 2221
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 170 (208)
...+..+|++++|+|.+++.++.....|...+..... +.|+++|+||+|+...... ...+...+.+++++||++
T Consensus 115 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 115 LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKT 189 (204)
T ss_pred HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCC
Confidence 1236789999999999999988887777776655443 6899999999998553221 134444566899999999
Q ss_pred CCCHHHHHHHHHHH
Q psy2518 171 DINVNSIFRYLTTK 184 (208)
Q Consensus 171 ~~~i~~~f~~i~~~ 184 (208)
|.|++++|+.+.+.
T Consensus 190 ~~gi~~l~~~L~~~ 203 (204)
T cd01878 190 GEGLDELLEAIEEL 203 (204)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998765
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.83 E-value=8e-20 Score=133.66 Aligned_cols=145 Identities=14% Similarity=0.164 Sum_probs=107.8
Q ss_pred EecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc------hhHhhhc--CCcEE
Q psy2518 32 YRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA------ITKAYYR--GAQAC 101 (208)
Q Consensus 32 ~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------~~~~~~~--~~d~i 101 (208)
++|.+++|| +++++.+..+...+.++.+.+.....+.+++ ..+.+|||||++.+.. +...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999 4566656555544555555666667777776 4689999999977654 3556664 99999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
++|+|.+++++.. .|...+.+. +.|+++++||+|+.+...+..+ ...++..++++++++||++|.|+.++|+.+
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l 152 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLEL--GLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDAI 152 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHHc--CCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHHH
Confidence 9999999865432 344444332 6899999999999665444433 456777788999999999999999999988
Q ss_pred HHH
Q psy2518 182 TTK 184 (208)
Q Consensus 182 ~~~ 184 (208)
.+.
T Consensus 153 ~~~ 155 (158)
T cd01879 153 AEL 155 (158)
T ss_pred HHH
Confidence 775
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.82 E-value=8.6e-21 Score=144.71 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=103.3
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC-----------hhhhcchh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG-----------QEEFDAIT 91 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g-----------~~~~~~~~ 91 (208)
...++|+++|.+++|| +++++.++.+...+.|+.+ +....+.+. .+.+|||+| +++++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 3468999999999999 4677777777665666543 333334333 589999999 67777777
Q ss_pred Hhhhc----CCcEEEEEEeCCChhhHHHHHHH------------HHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH
Q psy2518 92 KAYYR----GAQACVITFSTIDRDSFEAAHSW------------KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL 155 (208)
Q Consensus 92 ~~~~~----~~d~ii~v~d~~~~~s~~~~~~~------------~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~ 155 (208)
..+++ .++++++|+|.++...+ ...| ...+.. .+.|+++|+||+|+.+.+ .+...++
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~---~~~~~~~ 153 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR---DEVLDEI 153 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH---HHHHHHH
Confidence 77764 34677777776543221 0122 111221 278999999999985433 4456666
Q ss_pred HHHhCC---------eEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518 156 SRALGC---------RLMRTSVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 156 ~~~~~~---------~~~e~Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
+..+++ +++++||++| |++++|+.+.+.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 776665 4799999999 999999999987643
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.82 E-value=3.6e-19 Score=127.92 Aligned_cols=150 Identities=33% Similarity=0.596 Sum_probs=117.5
Q ss_pred EecCceEEE--EEEeeecCcc-ccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCC
Q psy2518 32 YRGAQACVI--TFSTIDRDSF-EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTI 108 (208)
Q Consensus 32 ~vG~s~~gk--~~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~ 108 (208)
++|..++|| +++++..... ...+.+|. .++........+....+.+||++|+..+......+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999 3455555555 56667777 7888888888888899999999999988888888999999999999999
Q ss_pred ChhhHHHHHHHH--HHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH-HHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 109 DRDSFEAAHSWK--MKVENECGEIPTVLVQNKIDLLDQSVVAPEE-ADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 109 ~~~s~~~~~~~~--~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~-~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
++.++.....|. ..........|+++++||+|+.......... ........+.+++++||+.+.|++++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999999887772 2222333389999999999986543332222 3344555567999999999999999999875
No 146
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.80 E-value=5.1e-19 Score=154.01 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=117.3
Q ss_pred eeeeEEEecCceEEE--EEEeeecC-------cccccccc------ccccceeeEEEEE-----CCeEEEEEEEeCCChh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRD-------SFEAAHSW------KMKVSIKRTIKEC-----EGEEVRLMLWDTAGQE 85 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~-------~f~~~~~~------t~~~~~~~~~~~~-----~~~~~~l~i~Dt~g~~ 85 (208)
...+++++|..++|| +..+++.. .+...+.. +.|+.+..+.+.+ ++..+.+++|||||++
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 467899999999999 33444332 23333332 3366665554443 5778999999999999
Q ss_pred hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---e
Q psy2518 86 EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC---R 162 (208)
Q Consensus 86 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~---~ 162 (208)
.|...+..+++.+|++++|+|+++..+++....|..... .+.|+++|+||+|+.+. ...+...+++..+++ .
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~--~~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSA--DPERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCcc--CHHHHHHHHHHHhCCCcce
Confidence 999999999999999999999999877777666654443 26899999999998542 123334556666666 4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518 163 LMRTSVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 163 ~~e~Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
++++||++|.|++++|+.+++.+..
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCC
Confidence 8999999999999999999887643
No 147
>KOG0075|consensus
Probab=99.80 E-value=5.4e-19 Score=123.78 Aligned_cols=152 Identities=22% Similarity=0.313 Sum_probs=121.4
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
.....+.++|-..+|| +.+....+.|.+.-.||+| .....++...+.+.+||.+|+.+|+++|..|++++++++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG----fnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhccccc----ceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 3456788999999999 4577778899999999999 445577788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh--------CCeEEEEecCCCC
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL--------GCRLMRTSVKEDI 172 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~e~Sa~~~~ 172 (208)
+|+|..+++.+.....-+..+..... .+|++++|||.|+.+ ...... +..++ .+-+|.+||++..
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~---li~rmgL~sitdREvcC~siScke~~ 168 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIA---LIERMGLSSITDREVCCFSISCKEKV 168 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHH---HHHHhCccccccceEEEEEEEEcCCc
Confidence 99999999888766544444433332 799999999999854 233322 22333 3458999999999
Q ss_pred CHHHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTTKC 185 (208)
Q Consensus 173 ~i~~~f~~i~~~~ 185 (208)
|++.+.++++++-
T Consensus 169 Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 169 NIDITLDWLIEHS 181 (186)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999998864
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=5.3e-19 Score=130.64 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=103.8
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
.|+++|..++|| +++++..+.+...+.++...+.....+..+ +....+.+|||+|++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 388999999999 467777777776544444333333333333 24667899999999999888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC-HHHHHHHHH----H--hCCeEEEEecCCCCCHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA-PEEADLLSR----A--LGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~-~~~~~~~~~----~--~~~~~~e~Sa~~~~~i~~~f 178 (208)
|.++....+... .+..+.. .+.|+++|+||+|+....... .+....+.. . .+++++++||++|.|+.++|
T Consensus 82 d~~~~~~~~~~~-~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence 998843222111 1112222 268999999999985421100 011111111 1 13589999999999999999
Q ss_pred HHHHHHH
Q psy2518 179 RYLTTKC 185 (208)
Q Consensus 179 ~~i~~~~ 185 (208)
+.+.+..
T Consensus 159 ~~l~~~~ 165 (168)
T cd01887 159 EAILLLA 165 (168)
T ss_pred HHHHHhh
Confidence 9998764
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=4.3e-19 Score=151.46 Aligned_cols=157 Identities=19% Similarity=0.134 Sum_probs=111.4
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcchh-
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDAIT- 91 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~~- 91 (208)
..+||+++|..++|| +++++....+. ....++.+.+.....+.+++..+ .+|||+|. +.|..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999 46777666542 23445555677777788887764 79999994 4444443
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC--CCHHHHH-HHHHHhCCeEEEEec
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV--VAPEEAD-LLSRALGCRLMRTSV 168 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~--v~~~~~~-~~~~~~~~~~~e~Sa 168 (208)
..++++||++++|+|++++.+++.+. ++..+.. .+.|+++|+||+|+.+... ...++.. .+.....++++++||
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 24678999999999999998888764 4444433 2689999999999954211 0111111 122223468999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy2518 169 KEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 169 ~~~~~i~~~f~~i~~~~~~ 187 (208)
++|.||+++|+.+.+.+..
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 150
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=1e-18 Score=142.49 Aligned_cols=161 Identities=17% Similarity=0.151 Sum_probs=113.3
Q ss_pred cceeeeEEEecCceEEE-E-EEeeecCccc-cccc-cccccceeeEEEEECCeEEEEEEEeCCChhh----hcchhHh--
Q psy2518 24 FDAITKAYYRGAQACVI-T-FSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----FDAITKA-- 93 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk-~-~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~~~-- 93 (208)
....-.|.++|..++|| + ++++...... ..|+ +|+. ...-.+.+. ....+.+||+||... ...+...
T Consensus 155 lk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~--p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~fl 231 (335)
T PRK12299 155 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLH--PNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFL 231 (335)
T ss_pred EcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeC--ceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHH
Confidence 44566899999999999 3 3443332211 1222 2332 222233332 223589999999732 1223334
Q ss_pred -hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC
Q psy2518 94 -YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169 (208)
Q Consensus 94 -~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~ 169 (208)
.+..++++++|+|+++.++++.+..|..++..+.+ +.|+++|+||+|+.+...+..++.+.++...+.+++++||+
T Consensus 232 rhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAk 311 (335)
T PRK12299 232 KHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAV 311 (335)
T ss_pred HHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcC
Confidence 45679999999999998899999999999887654 68999999999996655444455555666667899999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy2518 170 EDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 170 ~~~~i~~~f~~i~~~~~~ 187 (208)
++.|++++|+.+.+.+.+
T Consensus 312 tg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 312 TGEGLDELLRALWELLEE 329 (335)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999888754
No 151
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.79 E-value=9.5e-19 Score=147.54 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=116.1
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCc--cccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch-------
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDS--FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI------- 90 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~------- 90 (208)
+..+..+||+++|+.++|| +++++.... +...++. .+.++....+.+++.+ +.+|||+|...+...
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pg-tTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~ 274 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKG-TTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIE 274 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC-cEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHH
Confidence 5667789999999999999 456666553 3344433 3457777788887765 589999998544322
Q ss_pred -hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC
Q psy2518 91 -TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169 (208)
Q Consensus 91 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~ 169 (208)
...+++.+|++++|||.+++.+++.. |+..+.. .+.|+++|+||+|+.+. +...+++.++.+++++||+
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak 344 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAK 344 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEe
Confidence 24578999999999999999888765 7666543 26899999999998542 2234566677889999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy2518 170 EDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 170 ~~~~i~~~f~~i~~~~~~~~ 189 (208)
+ .||+++|+.+.+.+.+..
T Consensus 345 ~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 345 Q-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred c-CCHHHHHHHHHHHHHHHh
Confidence 8 699999999999876543
No 152
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.79 E-value=2.2e-19 Score=125.59 Aligned_cols=112 Identities=23% Similarity=0.387 Sum_probs=87.7
Q ss_pred eEEEecCceEEE--EEEeeecCccc--cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFE--AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
||+++|+.|+|| +++++....+. ..+.++.+..+.............+++||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 799999999999 45667677776 23444445555566677788887899999999999988888889999999999
Q ss_pred EeCCChhhHHHH---HHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518 105 FSTIDRDSFEAA---HSWKMKVENECGEIPTVLVQNKID 140 (208)
Q Consensus 105 ~d~~~~~s~~~~---~~~~~~~~~~~~~~piivvgnK~D 140 (208)
||++++.||+.+ ..|+..+.+...+.|+++||||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999987 446777766566899999999998
No 153
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.78 E-value=2.4e-18 Score=141.27 Aligned_cols=149 Identities=20% Similarity=0.180 Sum_probs=106.1
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccc--cccccccceeeEEEEECCeEEEEEEEeCCCh---------hhhcchhH
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAA--HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ---------EEFDAITK 92 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~---------~~~~~~~~ 92 (208)
..++|+++|.+++|| +++++.+..+... ..+|. |.....+.+++. ..+.+|||+|. +.|.+. .
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-l 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-L 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-H
Confidence 568999999999999 4666666654322 23444 556667777432 36889999997 233332 2
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED 171 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 171 (208)
..+++||++++|+|.+++.+++.+..|...+..... +.|+++|+||+|+.+.. +..... ....+++++||++|
T Consensus 264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~~-~~~~~~i~iSAktg 337 (351)
T TIGR03156 264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERLE-EGYPEAVFVSAKTG 337 (351)
T ss_pred HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHHH-hCCCCEEEEEccCC
Confidence 357899999999999999888887766655555433 78999999999985422 112111 12246899999999
Q ss_pred CCHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTK 184 (208)
Q Consensus 172 ~~i~~~f~~i~~~ 184 (208)
.|++++++.+.+.
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999988754
No 154
>KOG0071|consensus
Probab=99.77 E-value=7.9e-18 Score=117.09 Aligned_cols=154 Identities=17% Similarity=0.224 Sum_probs=118.2
Q ss_pred eeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 26 AITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
+.++++.+|-.++|| +++.-+.-.-..+..||+|.. .+ .+..+++++++||.+|+++.+.+|+.||.++.++|||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFn--ve--tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN--VE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccccccccee--EE--EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 467899999999999 444333444455678888833 23 3445778899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~ 177 (208)
.|..+++..++.+.-+-.+.++.. +.|+++.+||.|+++ ..+..++..+.. ....-+..+||.+|.++.|.
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 999999888877655555544443 899999999999965 345555554432 22345689999999999999
Q ss_pred HHHHHHHH
Q psy2518 178 FRYLTTKC 185 (208)
Q Consensus 178 f~~i~~~~ 185 (208)
|.++...+
T Consensus 170 lswlsnn~ 177 (180)
T KOG0071|consen 170 LSWLSNNL 177 (180)
T ss_pred HHHHHhhc
Confidence 99988764
No 155
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=4e-18 Score=139.67 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=105.1
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccc---cccccccccceeeEEEEECCeEEEEEEEeCCChh-hhcchhH------
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFE---AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE-EFDAITK------ 92 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~---~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~-~~~~~~~------ 92 (208)
.+.++|+++|..++|| +++++.++.+. +.+.+|. +.....+..++. ++.+|||||.. .+..+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr--~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR--SIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc--CcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHH
Confidence 5678999999999999 46777777664 2333443 334455555554 57999999984 2222221
Q ss_pred -hhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEec
Q psy2518 93 -AYYRGAQACVITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG--CRLMRTSV 168 (208)
Q Consensus 93 -~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~Sa 168 (208)
..+++||++++|+|.++ +|.... .|+..+... +.|.++|+||+|+.+. ...++.+++...+ ..++++||
T Consensus 126 ~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence 34789999999999765 455553 445544433 4677889999998542 2345555555544 47999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy2518 169 KEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 169 ~~~~~i~~~f~~i~~~~~ 186 (208)
++|.|++++|+.+.+.+.
T Consensus 199 ktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAK 216 (339)
T ss_pred cCccCHHHHHHHHHHhCC
Confidence 999999999999988764
No 156
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.76 E-value=1.2e-18 Score=128.14 Aligned_cols=138 Identities=15% Similarity=0.159 Sum_probs=97.2
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh-----hhhcchhHhhhcCCcEE
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ-----EEFDAITKAYYRGAQAC 101 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~-----~~~~~~~~~~~~~~d~i 101 (208)
||+++|..++|| ++++ +.+.+.. ..+|.++ .+++. .+|||||. +.+..+ ...++.+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~-l~~~~~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNA-LQGNYTL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHH-HcCCCcc-CccceEE-------EECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEE
Confidence 799999999999 3444 3344321 2233332 22222 26999997 332222 2347899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC--eEEEEecCCCCCHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC--RLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~ 179 (208)
++|+|.++.+++. ..|+..+ ..+.|+++++||+|+.+ ...+...+++.+.++ +++++||++|.|++++|+
T Consensus 69 l~v~d~~~~~s~~--~~~~~~~---~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 69 IYVHGANDPESRL--PAGLLDI---GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEEeCCCccccc--CHHHHhc---cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 9999999988763 3455443 23679999999999854 345667777778875 899999999999999999
Q ss_pred HHHHHHHHH
Q psy2518 180 YLTTKCLSE 188 (208)
Q Consensus 180 ~i~~~~~~~ 188 (208)
.+.+.+.+.
T Consensus 141 ~l~~~~~~~ 149 (158)
T PRK15467 141 YLASLTKQE 149 (158)
T ss_pred HHHHhchhh
Confidence 998876543
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=3.6e-18 Score=145.81 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=107.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhh--------hcchhHh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--------FDAITKA 93 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~ 93 (208)
....+|+++|..++|| +++++..+.+. ....|++..+.....+.+++.. +.+|||+|.+. +......
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~ 113 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAEV 113 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHHH
Confidence 4567999999999999 46777766543 2334444445555555566654 78999999752 3444566
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2518 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDI 172 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 172 (208)
+++.||++|+|+|.++..++.. ..|...+.. .+.|+++|+||+|+... ..+..+.+ ..++ ..+++||++|.
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~---~~~~~~~~--~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERG---EADAAALW--SLGLGEPHPVSALHGR 185 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCcc---chhhHHHH--hcCCCCeEEEEcCCCC
Confidence 7899999999999998866543 233333333 26899999999998532 12222222 3344 46799999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTTKCLS 187 (208)
Q Consensus 173 ~i~~~f~~i~~~~~~ 187 (208)
|++++|+.+++.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999988754
No 158
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.76 E-value=8.6e-18 Score=136.90 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=109.5
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccc-cccc-cccccceeeEEEEECCeEEEEEEEeCCChhhh----cchhHhh-
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF----DAITKAY- 94 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----~~~~~~~- 94 (208)
......|.++|..++|| +++++...... ..|+ +|. .-....+.+++ ...+.+||+||.... ..+...+
T Consensus 154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~--~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~fl 230 (329)
T TIGR02729 154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTL--VPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFL 230 (329)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--CCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHH
Confidence 45567899999999999 34444433321 1222 122 11222333433 356899999997432 2344444
Q ss_pred --hcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518 95 --YRGAQACVITFSTIDR---DSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166 (208)
Q Consensus 95 --~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 166 (208)
+..++++++|+|+++. ++++.+..|..++..+.+ +.|+++|+||+|+.+... ..+..+.++...+.+++++
T Consensus 231 rhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~i 309 (329)
T TIGR02729 231 KHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPI 309 (329)
T ss_pred HHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEE
Confidence 4479999999999987 678888888888776643 789999999999965432 3445555666667899999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy2518 167 SVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~ 185 (208)
||+++.|++++|+.+.+.+
T Consensus 310 SAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 310 SALTGEGLDELLYALAELL 328 (329)
T ss_pred EccCCcCHHHHHHHHHHHh
Confidence 9999999999999988754
No 159
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.76 E-value=3.2e-18 Score=144.98 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=109.2
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCcc--ccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch--------h
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSF--EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI--------T 91 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~--------~ 91 (208)
.+..+||+++|..++|| +++++..... ...+ +....++....+.+++.+ +.+|||+|.+.+... .
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~ 288 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDI-AGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERS 288 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHH
Confidence 44568999999999999 4666666543 2223 333346667777777654 799999998654332 2
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED 171 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 171 (208)
..+++.+|++++|||.+++.+++....|.. ..+.|+++|+||+|+.+..... ...+.+++++||++|
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg 355 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTG 355 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCC
Confidence 346889999999999999988876655543 3378999999999995533221 334568999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTKCLS 187 (208)
Q Consensus 172 ~~i~~~f~~i~~~~~~ 187 (208)
.|++++++.+.+.+..
T Consensus 356 ~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 356 EGIDELREAIKELAFG 371 (449)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999988753
No 160
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.76 E-value=2.8e-18 Score=127.62 Aligned_cols=150 Identities=18% Similarity=0.149 Sum_probs=100.7
Q ss_pred EecCceEEE--EEEeeecCcc-cccc-ccccccceeeEEEEECCeEEEEEEEeCCChhh----hcchh---HhhhcCCcE
Q psy2518 32 YRGAQACVI--TFSTIDRDSF-EAAH-SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----FDAIT---KAYYRGAQA 100 (208)
Q Consensus 32 ~vG~s~~gk--~~~~~~~~~f-~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~---~~~~~~~d~ 100 (208)
++|++++|| +++++.+..+ ...+ .+|.+. ....+.+++ ...+.+|||||... ...+. ...++++|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEP--NLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecC--cceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 589999999 3455545543 2222 233332 223344441 34579999999632 22222 345788999
Q ss_pred EEEEEeCCCh------hhHHHHHHHHHHHHhhc--------CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518 101 CVITFSTIDR------DSFEAAHSWKMKVENEC--------GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166 (208)
Q Consensus 101 ii~v~d~~~~------~s~~~~~~~~~~~~~~~--------~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 166 (208)
+++|+|.+++ .+++....|...+.... .+.|+++|+||+|+...+..............+.+++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 9999999988 57887777777776443 268999999999996544433332233444445689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q psy2518 167 SVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~ 184 (208)
||+++.|++++++.+.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999988754
No 161
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.74 E-value=6.9e-18 Score=127.90 Aligned_cols=156 Identities=11% Similarity=0.065 Sum_probs=99.0
Q ss_pred eeEEEecCceEEE--EEEeeec----Ccccc-----ccccccccceeeEEEE----------ECCeEEEEEEEeCCChhh
Q psy2518 28 TKAYYRGAQACVI--TFSTIDR----DSFEA-----AHSWKMKVSIKRTIKE----------CEGEEVRLMLWDTAGQEE 86 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~----~~f~~-----~~~~t~~~~~~~~~~~----------~~~~~~~l~i~Dt~g~~~ 86 (208)
++|+++|..++|| +..++.. ..+.. ....|++..+....+. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 5799999999999 2344433 11222 1234555554444443 124467899999999876
Q ss_pred hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC--CCHHHHHHH-HH------
Q psy2518 87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV--VAPEEADLL-SR------ 157 (208)
Q Consensus 87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~--v~~~~~~~~-~~------ 157 (208)
+........+.+|++++|+|.++.........|.. .... +.|+++++||+|+..... ...++..+. ..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~~-~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEIL-CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHHc-CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 54433344567899999999988544443322221 1112 579999999999853211 112222221 11
Q ss_pred HhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 158 ALGCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 158 ~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
..+++++++||++|.|++++++.+.+++.
T Consensus 158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 158 FKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13568999999999999999999988764
No 162
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.74 E-value=1.3e-17 Score=121.59 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=101.2
Q ss_pred eeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc--------hhHhhhc
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA--------ITKAYYR 96 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~~~~~~~ 96 (208)
++|+++|++++|| +++++....+.. ...++...++....+..++ ..+.+|||+|...+.. .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 5899999999999 345554444321 2223333355555555554 4579999999754432 1234678
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
.+|++++|+|++++.+..+...|.. ....|+++|+||+|+.+.... .....+.+++++||+++.|+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHH
Confidence 9999999999999888776654432 337999999999998653322 3334456899999999999999
Q ss_pred HHHHHHHHH
Q psy2518 177 IFRYLTTKC 185 (208)
Q Consensus 177 ~f~~i~~~~ 185 (208)
+++.+.+.+
T Consensus 148 l~~~l~~~~ 156 (157)
T cd04164 148 LKEALLELA 156 (157)
T ss_pred HHHHHHHhh
Confidence 999987653
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.73 E-value=1.8e-17 Score=120.88 Aligned_cols=143 Identities=14% Similarity=0.095 Sum_probs=95.1
Q ss_pred EEecCceEEE--EEEeeecCc--cccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc--------hhHhhhcCC
Q psy2518 31 YYRGAQACVI--TFSTIDRDS--FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA--------ITKAYYRGA 98 (208)
Q Consensus 31 ~~vG~s~~gk--~~~~~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~~~~~~~~~ 98 (208)
+++|.+|+|| +++++.... +.+.++++. .+........++ ..+.+|||||...+.. .....++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVT-RDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCce-eCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 4789999999 345554443 223333322 234444444544 5689999999876433 334567899
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSI 177 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~ 177 (208)
|++++|+|..+..+.... .+...+.+. +.|+++|+||+|+.+.... .......+. +++++||++|.|++++
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 999999999876554432 112222222 5899999999998553221 223344566 8899999999999999
Q ss_pred HHHHHHH
Q psy2518 178 FRYLTTK 184 (208)
Q Consensus 178 f~~i~~~ 184 (208)
|+.+++.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.72 E-value=5.3e-17 Score=140.94 Aligned_cols=152 Identities=13% Similarity=0.159 Sum_probs=108.1
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
.+..+|.++|..++|| ++.++....+...+.+++..++....+.+++.. .+.+|||||++.|..++...++.+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 4557899999999999 456666777776665555445545555554332 6899999999999999998999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC---------CeEEEEecCCCCC
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG---------CRLMRTSVKEDIN 173 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~e~Sa~~~~~ 173 (208)
+|+|.++...-+....| ..... .+.|+++++||+|+.+ ...+.....+...+ .+++++||++|.|
T Consensus 164 LVVda~dgv~~qT~e~i-~~~~~--~~vPiIVviNKiDl~~---~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAI-SHAKA--ANVPIIVAINKIDKPE---ANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCCHhHHHHH-HHHHH--cCCCEEEEEECccccc---CCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 99999874322221111 11111 2689999999999854 23344444433332 3699999999999
Q ss_pred HHHHHHHHHH
Q psy2518 174 VNSIFRYLTT 183 (208)
Q Consensus 174 i~~~f~~i~~ 183 (208)
++++|+.+..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999864
No 165
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.72 E-value=4.9e-17 Score=129.55 Aligned_cols=150 Identities=12% Similarity=0.069 Sum_probs=100.2
Q ss_pred eEEEecCceEEE--EEEeeecCcccc--ccccccccceeeEEEEECCeEEEEEEEeCCChhhhc--------chhHhhhc
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEA--AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD--------AITKAYYR 96 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--------~~~~~~~~ 96 (208)
+|+++|..++|| +++++.+..+.. ..+.|.. +.. ..+...+ ..++.+|||||..... .....+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~~i-~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-NRI-SGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-CcE-EEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 689999999999 467666666542 2222332 222 2222222 2468999999974321 12345678
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHH
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVN 175 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~ 175 (208)
++|++++|+|.++..+.+ ..++..+... +.|+++|+||+|+.+... ..+....++...+. +++++||++|.|++
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQNL--KRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHhc--CCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 999999999999887764 3344444332 689999999999853221 22334445554555 89999999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCL 186 (208)
Q Consensus 176 ~~f~~i~~~~~ 186 (208)
++++.+.+.+.
T Consensus 154 ~L~~~l~~~l~ 164 (270)
T TIGR00436 154 FLAAFIEVHLP 164 (270)
T ss_pred HHHHHHHHhCC
Confidence 99999887763
No 166
>KOG0076|consensus
Probab=99.72 E-value=1.2e-17 Score=120.31 Aligned_cols=155 Identities=21% Similarity=0.255 Sum_probs=117.6
Q ss_pred eeeEEEecCceEEE-EEEeeecCccc--------cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518 27 ITKAYYRGAQACVI-TFSTIDRDSFE--------AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG 97 (208)
Q Consensus 27 ~~ki~~vG~s~~gk-~~~~~~~~~f~--------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 97 (208)
-+-++++|...+|| +|+-.....|. ..-.||+|...... .+. ...+.+||-+|++..+++|..||..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i--~v~--~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTI--EVC--NAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecce--eec--cceeEEEEcCChHHHHHHHHHHHHH
Confidence 46788999999999 44433333343 45567777544333 333 4458999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHH---HHh---CCeEEEEecC
Q psy2518 98 AQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLS---RAL---GCRLMRTSVK 169 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~---~~~---~~~~~e~Sa~ 169 (208)
+|++|+++|.++++-|+....-+..+..+.. ++|+++.+||.|+.+. ...++..... ... .+++..|||.
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 9999999999999999988777777665554 8999999999998552 3333333322 222 3589999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy2518 170 EDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 170 ~~~~i~~~f~~i~~~~~~ 187 (208)
+|.||++...+++..+.+
T Consensus 171 ~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred hcccHHHHHHHHHHHHhh
Confidence 999999999999998764
No 167
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.72 E-value=6.9e-17 Score=122.48 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=104.2
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcchh
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDAIT 91 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~~ 91 (208)
.+...+|+++|.+++|| +++++..+.|...+.++.|.......... ...+.+|||+|. +.+..+.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 45678999999999999 46777777777777777764433222222 367999999993 4555555
Q ss_pred HhhhcCC---cEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHHHHHHHHHhCCeEE
Q psy2518 92 KAYYRGA---QACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEEADLLSRALGCRLM 164 (208)
Q Consensus 92 ~~~~~~~---d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~~~~~~~~~~~~~~ 164 (208)
..+++.+ +++++|+|.+++.+... +..|+ .. .+.|+++++||+|+.+.... ..+++.......+.+++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l----~~-~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL----KE-YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH----HH-cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 6666644 67888999887654432 22332 11 26899999999998542211 11223333333357899
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q psy2518 165 RTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 165 e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
++||+++.|++++|+.+.+.+
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999887654
No 168
>PRK11058 GTPase HflX; Provisional
Probab=99.72 E-value=9.7e-17 Score=134.73 Aligned_cols=154 Identities=20% Similarity=0.148 Sum_probs=104.9
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhh--cchh------HhhhcC
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF--DAIT------KAYYRG 97 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--~~~~------~~~~~~ 97 (208)
.+|+++|.+++|| +++++....+.....+..+.+.....+.+.+.. .+.+|||+|..+. ..++ ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 5899999999999 467666655443223333345555566665431 4679999997431 1222 234689
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe-EEEEecCCCCCHH
Q psy2518 98 AQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCR-LMRTSVKEDINVN 175 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~ 175 (208)
||++++|+|.+++.+++.+..|...+..... +.|+++|+||+|+.+... .... ....+.+ ++++||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 9999999999999888877555444443332 689999999999854211 1111 1123554 5899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCLS 187 (208)
Q Consensus 176 ~~f~~i~~~~~~ 187 (208)
++++.+.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999988754
No 169
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=9.5e-17 Score=135.82 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=103.2
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch----------h
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI----------T 91 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~----------~ 91 (208)
...+|++++|..++|| +++++...... ....+....+.....+..++. .+.+|||+|..++... .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 4568999999999999 35555554422 111222223444555556665 5789999996443321 1
Q ss_pred -HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHH-HHHHHh----CCeEEE
Q psy2518 92 -KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD-LLSRAL----GCRLMR 165 (208)
Q Consensus 92 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~-~~~~~~----~~~~~e 165 (208)
..+++.+|++++|+|.+++.+.+... ++..+.+. +.|+++|+||+|+.+.. ...++.. .+...+ ++++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~--~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILEA--GKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc--CCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEE
Confidence 24688999999999999988776653 33333332 68999999999986211 1111222 122222 368999
Q ss_pred EecCCCCCHHHHHHHHHHHHHH
Q psy2518 166 TSVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 166 ~Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
+||++|.|++++|+.+.+.+..
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 170
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.71 E-value=5e-17 Score=122.10 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=103.3
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccc----------------cccceeeEEEEECCeEEEEEEEeCCChhhhcch
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWK----------------MKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI 90 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t----------------~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 90 (208)
+|+++|..++|| +++.+....+...+.++ +..+.....+.. ....+.+|||+|...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence 478999999999 34555555554433221 111222222222 3567999999999988888
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHHHHHHHHH----------
Q psy2518 91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEEADLLSRA---------- 158 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~~~~~~~~---------- 158 (208)
+..+++.+|++++|+|.+++.+... ..++..+.. .+.|+++++||+|+..+... ..++..+..+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 8899999999999999988765443 233444433 37999999999998542211 12223333332
Q ss_pred ----hCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 159 ----LGCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 159 ----~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
...+++++||++|.|++++|..+.+.+
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 245899999999999999999988875
No 171
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.71 E-value=7.3e-17 Score=140.47 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=111.7
Q ss_pred eEEEecCceEEE--EEEeeec---CccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 29 KAYYRGAQACVI--TFSTIDR---DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~---~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
.|.++|..++|| +++++.. +.+.+++.+++++++....+.+++ ..+.+|||||+++|.......+.++|++++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 578999999999 3444442 566677777777777767777766 679999999999998888888999999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCC--CHHHHHHHHHHh----CCeEEEEecCCCCC
Q psy2518 104 TFSTID---RDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVV--APEEADLLSRAL----GCRLMRTSVKEDIN 173 (208)
Q Consensus 104 v~d~~~---~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v--~~~~~~~~~~~~----~~~~~e~Sa~~~~~ 173 (208)
|+|.++ +++++.+. + +. .. +.| +++|+||+|+.++..+ ..++..++.+.. +++++++||++|.|
T Consensus 80 VVDa~~G~~~qT~ehl~-i---l~-~l-gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G 153 (581)
T TIGR00475 80 VVDADEGVMTQTGEHLA-V---LD-LL-GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG 153 (581)
T ss_pred EEECCCCCcHHHHHHHH-H---HH-Hc-CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence 999998 45555442 2 21 12 567 9999999999653322 233445555544 46899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKCL 186 (208)
Q Consensus 174 i~~~f~~i~~~~~ 186 (208)
+++++..+.+.+.
T Consensus 154 I~eL~~~L~~l~~ 166 (581)
T TIGR00475 154 IGELKKELKNLLE 166 (581)
T ss_pred chhHHHHHHHHHH
Confidence 9999998776653
No 172
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=2.7e-16 Score=116.26 Aligned_cols=153 Identities=15% Similarity=0.095 Sum_probs=99.3
Q ss_pred eeeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhh----------cch-hH
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF----------DAI-TK 92 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----------~~~-~~ 92 (208)
.++|+++|..++|| +++++....+.. ...++...+.....+..++.. +.+|||+|.... ... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence 47899999999999 345555554322 222323234444555566655 679999996432 111 12
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHH-HHHHHh----CCeEEEEe
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD-LLSRAL----GCRLMRTS 167 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~-~~~~~~----~~~~~e~S 167 (208)
..+..+|++++|+|.+++.+..... ++...... +.|+++++||+|+.+.+....+... .+.... +.+++++|
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILEE--GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHhc--CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 3567999999999999987765542 33333222 6899999999998654322222222 222333 25899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy2518 168 VKEDINVNSIFRYLTTK 184 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~ 184 (208)
|+++.|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999988754
No 173
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.70 E-value=8.4e-17 Score=140.24 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=107.6
Q ss_pred cCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch------hHhhh--cCCcEEEE
Q psy2518 34 GAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI------TKAYY--RGAQACVI 103 (208)
Q Consensus 34 G~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~------~~~~~--~~~d~ii~ 103 (208)
|+.++|| +++++.+..+.....|+.+++.....+.+++.. +++|||||++.+... .+.++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 7889999 467777777655556666667776777776654 799999999877553 33343 37999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|+|.++.+. ...+..++.+. +.|+++++||+|+.+++.+. .+.+++++..+++++++||++|.|++++|+.+.+
T Consensus 79 VvDat~ler---~l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLEL--GIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred EecCCcchh---hHHHHHHHHhc--CCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 999987432 22333333322 79999999999986655554 3567788889999999999999999999999987
Q ss_pred HH
Q psy2518 184 KC 185 (208)
Q Consensus 184 ~~ 185 (208)
..
T Consensus 153 ~~ 154 (591)
T TIGR00437 153 AI 154 (591)
T ss_pred Hh
Confidence 53
No 174
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.70 E-value=6.9e-17 Score=121.07 Aligned_cols=147 Identities=13% Similarity=0.059 Sum_probs=97.7
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcch
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDAI 90 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~ 90 (208)
.-++..+|+++|.+++|| +++++....+...+.++.|.......+..++ .+.+|||+|. +.+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 346788999999999999 4676666666666666666444334344443 5899999994 334444
Q ss_pred hHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC--CCCHHHHHHHHHHhC--CeE
Q psy2518 91 TKAYYRG---AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS--VVAPEEADLLSRALG--CRL 163 (208)
Q Consensus 91 ~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~--~v~~~~~~~~~~~~~--~~~ 163 (208)
...+++. ++++++|+|.+++.+..... ++..+... ..|+++++||+|+.+.. ....++.++.....+ .++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 4556653 58999999999876655542 22222222 68999999999985321 112333444444443 479
Q ss_pred EEEecCCCCCHH
Q psy2518 164 MRTSVKEDINVN 175 (208)
Q Consensus 164 ~e~Sa~~~~~i~ 175 (208)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999973
No 175
>KOG0072|consensus
Probab=99.70 E-value=1.2e-16 Score=111.66 Aligned_cols=156 Identities=14% Similarity=0.149 Sum_probs=113.1
Q ss_pred eeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 26 AITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
....++++|-.|.|| ++.--.+-.-.....||+|.. ..++..++.++++||-+|+-..+..|+.||.+.|++|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfn----ve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFN----VETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcC----ccccccccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 456789999999999 333222333345677888733 334555888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHH-----HHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEA-----DLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~-----~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
+|.+|++...-....+-.+.+... ...+++++||.|... + .+..|+ ....+..-+.+|++||.+|.|+++.
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~-~-~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG-A-LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh-h-hhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 999998866555443333433322 677899999999854 2 222222 2223333458999999999999999
Q ss_pred HHHHHHHHHH
Q psy2518 178 FRYLTTKCLS 187 (208)
Q Consensus 178 f~~i~~~~~~ 187 (208)
++++.+-+..
T Consensus 171 ~DWL~~~l~~ 180 (182)
T KOG0072|consen 171 MDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHhc
Confidence 9999887643
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=1.9e-16 Score=134.26 Aligned_cols=145 Identities=16% Similarity=0.106 Sum_probs=101.6
Q ss_pred eeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhh--------hcchhHhhhc
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--------FDAITKAYYR 96 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~~~~ 96 (208)
.+|+++|..++|| +++++...... ....+.++.+.....+.+++ ..+.+|||+|.+. +......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999 46666655532 11223333455666666766 6789999999876 2333456788
Q ss_pred CCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2518 97 GAQACVITFSTIDRDSFE--AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDIN 173 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 173 (208)
.+|++++|+|.+++.+.. .+..|+... +.|+++|+||+|+.+. .+...++ ..+++ .++++||++|.|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~g 149 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGRG 149 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCC
Confidence 999999999998864432 234444322 6899999999997431 2222222 34566 589999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTK 184 (208)
Q Consensus 174 i~~~f~~i~~~ 184 (208)
++++|+.+.+.
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
No 177
>KOG1707|consensus
Probab=99.69 E-value=1.5e-17 Score=139.53 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=127.5
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
.+.++|+++|+.|+|| +++.+..+.|.++.++-.. ......++....+-..|.||+..+.-+......++.||++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 7889999999999999 5677778999988777653 22333445556666899999866555555677889999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhc---CCCCEEEEEeCCCCCCCCCCCHHH-HHHHHHHhC-C-eEEEEecCCCCCHH
Q psy2518 103 ITFSTIDRDSFEAA-HSWKMKVENEC---GEIPTVLVQNKIDLLDQSVVAPEE-ADLLSRALG-C-RLMRTSVKEDINVN 175 (208)
Q Consensus 103 ~v~d~~~~~s~~~~-~~~~~~~~~~~---~~~piivvgnK~Dl~~~~~v~~~~-~~~~~~~~~-~-~~~e~Sa~~~~~i~ 175 (208)
++|+.+++++++.+ .+|+..+.+.. .+.|+|+||||+|+......+.+. ...+..++. + ..++|||++..++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~ 164 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS 164 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence 99999999999999 78999999988 489999999999996654443333 344444443 3 57999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCLSE 188 (208)
Q Consensus 176 ~~f~~i~~~~~~~ 188 (208)
++|....+.++..
T Consensus 165 e~fYyaqKaVihP 177 (625)
T KOG1707|consen 165 ELFYYAQKAVIHP 177 (625)
T ss_pred hhhhhhhheeecc
Confidence 9999887777654
No 178
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.69 E-value=2.8e-16 Score=120.10 Aligned_cols=114 Identities=13% Similarity=0.231 Sum_probs=86.6
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC-cEEEEEE
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA-QACVITF 105 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~-d~ii~v~ 105 (208)
.|+++|++++|| ++.++..+.|..++.++.. ..........+....+.+|||||+++++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~-~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEP-NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEee-cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999 5677778888777665532 22222222224567799999999999998888899998 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHhh----cCCCCEEEEEeCCCCCC
Q psy2518 106 STIDR-DSFEAAHSWKMKVENE----CGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 106 d~~~~-~s~~~~~~~~~~~~~~----~~~~piivvgnK~Dl~~ 143 (208)
|.++. .++..+..|+..+... .+..|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 6777776666554322 24799999999999854
No 179
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.69 E-value=2.7e-16 Score=137.16 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=112.3
Q ss_pred ceeeeEEEecCceEEEE--EEeeec--Ccc---------ccc--cccccccceeeEEEEE-----CCeEEEEEEEeCCCh
Q psy2518 25 DAITKAYYRGAQACVIT--FSTIDR--DSF---------EAA--HSWKMKVSIKRTIKEC-----EGEEVRLMLWDTAGQ 84 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk~--~~~~~~--~~f---------~~~--~~~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~g~ 84 (208)
....+++++|..++||+ ..+++. +.+ .+. ...+.|+.+....+.+ +++.+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 45678999999999992 233322 111 110 1223344444433333 567899999999999
Q ss_pred hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe--
Q psy2518 85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCR-- 162 (208)
Q Consensus 85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-- 162 (208)
..|...+..+++.+|++++|+|.++....+....|..... .+.|+++|+||+|+.+.. ..+...++...+++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence 9999889999999999999999998766665555544332 268999999999985422 233334455555653
Q ss_pred -EEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518 163 -LMRTSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 163 -~~e~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
++++||++|.|++++++.+.+.+...
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 89999999999999999999887543
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.68 E-value=5.3e-16 Score=136.87 Aligned_cols=152 Identities=14% Similarity=0.232 Sum_probs=108.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCcccccccccc--ccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKM--KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~--~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.+...|.++|..++|| ++.++....+...+.+++ .+..+...+..++....+.+|||||++.|..++...++.+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4667999999999999 345555666655443333 223344444445667889999999999999999999999999
Q ss_pred EEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH-------HHHhC--CeEEEEec
Q psy2518 101 CVITFSTIDR---DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL-------SRALG--CRLMRTSV 168 (208)
Q Consensus 101 ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~-------~~~~~--~~~~e~Sa 168 (208)
+++|+|+++. ++++.+.. +.. .+.|+++++||+|+... ..+...+. ...++ ++++++||
T Consensus 322 aILVVDA~dGv~~QT~E~I~~----~k~--~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAINY----IQA--ANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEEECcCCCChhhHHHHHH----HHh--cCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 9999999874 44443322 211 26899999999998542 12222222 22233 58999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy2518 169 KEDINVNSIFRYLTTKC 185 (208)
Q Consensus 169 ~~~~~i~~~f~~i~~~~ 185 (208)
++|.|++++|+.+....
T Consensus 393 ktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 393 SQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCHHHHHHhhhhhh
Confidence 99999999999887653
No 181
>KOG0074|consensus
Probab=99.68 E-value=1.5e-16 Score=110.91 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=119.8
Q ss_pred ccceeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 23 EFDAITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
+.++.+++.+.|-.+.|| +|+..+...-.....||-| |..+.+..+| .+++++||.+|+...+..|+.||.+.|++
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceE
Confidence 447789999999999999 5665555655566778877 4455555554 57899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHH----HHHHhCCeEEEEecCCCCCHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADL----LSRALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~----~~~~~~~~~~e~Sa~~~~~i~ 175 (208)
|+|.|.+|+.-|+++..-+.++..... ..|+.+.+||.|+.....+ ++.+.. ..+..-..+.+|||.+++|+.
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~-eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV-EEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch-HHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 999999999999998766666655444 7999999999998543222 121211 111223468899999999999
Q ss_pred HHHHHHHHH
Q psy2518 176 SIFRYLTTK 184 (208)
Q Consensus 176 ~~f~~i~~~ 184 (208)
+..+++...
T Consensus 169 dg~~wv~sn 177 (185)
T KOG0074|consen 169 DGSDWVQSN 177 (185)
T ss_pred CcchhhhcC
Confidence 988887654
No 182
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.67 E-value=5.4e-16 Score=113.65 Aligned_cols=154 Identities=11% Similarity=0.075 Sum_probs=97.0
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc--------chhHhhhc
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD--------AITKAYYR 96 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--------~~~~~~~~ 96 (208)
..+|+++|..|+|| +++++....+......... ...............+.+|||+|..... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQT-TRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCc-eeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999 3444444433222111111 1111112233345678999999964322 23345678
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCHH
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVN 175 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~ 175 (208)
.+|++++|+|.+++.+.. ...+...+... +.|+++|+||+|+........+....+....+ .+++++|++++.|++
T Consensus 82 ~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 158 (168)
T cd04163 82 DVDLVLFVVDASEPIGEG-DEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVD 158 (168)
T ss_pred hCCEEEEEEECCCccCch-HHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChH
Confidence 999999999999872211 12223333332 58999999999986433333344444444443 589999999999999
Q ss_pred HHHHHHHHH
Q psy2518 176 SIFRYLTTK 184 (208)
Q Consensus 176 ~~f~~i~~~ 184 (208)
++|+.+.+.
T Consensus 159 ~l~~~l~~~ 167 (168)
T cd04163 159 ELLEEIVKY 167 (168)
T ss_pred HHHHHHHhh
Confidence 999998764
No 183
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=1.4e-15 Score=127.28 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=108.8
Q ss_pred cceeeeEEEecCceEEE-E-EEeeecCccc-cccc-cccccceeeEEEEECCeEEEEEEEeCCChhh----hcchhHhh-
Q psy2518 24 FDAITKAYYRGAQACVI-T-FSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----FDAITKAY- 94 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk-~-~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~~~~- 94 (208)
...+..|.++|.+++|| + ++++...... ..|+ +|.... .-.+.++ ....+.+||+||... ...+...+
T Consensus 155 lk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~Pn--lG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fL 231 (424)
T PRK12297 155 LKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPN--LGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFL 231 (424)
T ss_pred ecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceE--EEEEEEe-CCceEEEEECCCCcccccccchHHHHHH
Confidence 34455899999999999 3 3444433211 1121 222211 1122332 134589999999632 22344455
Q ss_pred --hcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518 95 --YRGAQACVITFSTIDR---DSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166 (208)
Q Consensus 95 --~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 166 (208)
+.+++++++|+|+++. +++++...|..++..+.+ +.|+++|+||+|+.+ ..+..+.+++.++.+++++
T Consensus 232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~i 307 (424)
T PRK12297 232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPI 307 (424)
T ss_pred HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEE
Confidence 4569999999999864 677777888888877644 789999999999843 2345566777777889999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 167 SVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
||+++.|++++++.+.+.+.+.+
T Consensus 308 SA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 308 SALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999988876543
No 184
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.65 E-value=1.4e-15 Score=135.37 Aligned_cols=150 Identities=17% Similarity=0.233 Sum_probs=105.1
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
-.+.-.|.++|..++|| ++.++....+...+.+.+..+.....+.+++ ..+.||||||++.|..++...++.+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45667899999999999 3555555666554444333333334455554 5689999999999999999899999999
Q ss_pred EEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH-------HHHHhC--CeEEEEecC
Q psy2518 102 VITFSTIDR---DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL-------LSRALG--CRLMRTSVK 169 (208)
Q Consensus 102 i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~-------~~~~~~--~~~~e~Sa~ 169 (208)
++|+|.++. ++.+.+. .... .+.|+++++||+|+.+. ..+.... ++..++ ++++++||+
T Consensus 365 ILVVdAddGv~~qT~e~i~----~a~~--~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAIN----HAKA--AGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEEEECCCCCCHhHHHHHH----HHHh--cCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 999999883 3433321 1111 26899999999998542 1122211 223333 589999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy2518 170 EDINVNSIFRYLTTK 184 (208)
Q Consensus 170 ~~~~i~~~f~~i~~~ 184 (208)
+|.|++++|+.+...
T Consensus 436 tG~GI~eLle~I~~~ 450 (787)
T PRK05306 436 TGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCchHHHHhhhhh
Confidence 999999999998753
No 185
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.65 E-value=5.4e-16 Score=118.58 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=76.2
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR----DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV-- 147 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v-- 147 (208)
.++.+|||||++.|.......++.+|++++|+|++++ +++..+..| . .....|+++++||+|+..+...
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~-~~~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----E-IMGLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----H-HcCCCcEEEEEEchhccCHHHHHH
Confidence 6789999999999888777778899999999999873 334333322 1 1223579999999998542111
Q ss_pred CHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 148 APEEADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 148 ~~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
..++.+++.... +++++++||++|.|++++|+.+.+.+
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 112233333322 56899999999999999999988765
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=2.4e-15 Score=134.15 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=106.8
Q ss_pred eeeeEEEecCceEEE--EEEeeecCcc--ccccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcchh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSF--EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDAIT 91 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~~ 91 (208)
...||+++|..++|| +++++....+ ...+.+| +.+.....+.+++.. +.+|||+|. +.|..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gt-T~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGT-TRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCC-CcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHH
Confidence 458999999999999 4566666654 3333333 346666677777776 569999995 2333322
Q ss_pred -HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH-HHHHh----CCeEEE
Q psy2518 92 -KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL-LSRAL----GCRLMR 165 (208)
Q Consensus 92 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~-~~~~~----~~~~~e 165 (208)
..+++.+|++++|+|.++..+++.... +..+... +.|+++|+||+|+.+... .+..+. +...+ ..+++.
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~~--~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKV-MSMAVDA--GRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHHc--CCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 234789999999999999988887653 3333322 689999999999954211 112221 22221 236799
Q ss_pred EecCCCCCHHHHHHHHHHHHHH
Q psy2518 166 TSVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 166 ~Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
+||++|.|++++|+.+.+.+..
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 187
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.64 E-value=1.6e-15 Score=128.36 Aligned_cols=147 Identities=17% Similarity=0.155 Sum_probs=102.8
Q ss_pred eEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCCh--------hhhcchhHhhhcC
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ--------EEFDAITKAYYRG 97 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~--------~~~~~~~~~~~~~ 97 (208)
||+++|..++|| +++++....... ...|.+..+.....+.+++. .+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999 467766655321 11233333455555566665 4899999995 4455566678899
Q ss_pred CcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCH
Q psy2518 98 AQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINV 174 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i 174 (208)
+|++++|+|..+..+... +..|+.. . +.|+++|+||+|+.+.... ..+ ...+++ +++++||++|.|+
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~---~--~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRK---S--GKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH---h--CCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCCh
Confidence 999999999987544432 2334332 2 6899999999998553321 122 345677 8999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKCLS 187 (208)
Q Consensus 175 ~~~f~~i~~~~~~ 187 (208)
.++++.+.+.+..
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999887643
No 188
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=3.2e-15 Score=126.72 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=104.8
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccc-cccc-cccccceeeEEEEECCeEEEEEEEeCCChhh----hcchh---H
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----FDAIT---K 92 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~---~ 92 (208)
.....+|.++|..++|| +++++...... ..|+ +|+ +...-.+.+++ ..+.+|||||... ...+. .
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl--~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fL 231 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTL--VPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFL 231 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccc--cceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHH
Confidence 56677999999999999 34444433221 1222 232 22233344444 5689999999532 11222 2
Q ss_pred hhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhc------------CCCCEEEEEeCCCCCCCCCCCHHHHHHHH
Q psy2518 93 AYYRGAQACVITFSTIDR----DSFEAAHSWKMKVENEC------------GEIPTVLVQNKIDLLDQSVVAPEEADLLS 156 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~~~~~~------------~~~piivvgnK~Dl~~~~~v~~~~~~~~~ 156 (208)
..+..+|++++|+|+++. +.++.+..|..++..+. ...|+++|+||+|+.+.+.+. +......
T Consensus 232 rhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l 310 (500)
T PRK12296 232 RHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPEL 310 (500)
T ss_pred HHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHH
Confidence 245789999999999853 35555555555554432 268999999999996533222 2222233
Q ss_pred HHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 157 RALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 157 ~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
...+++++++||+++.|+++++..+.+.+....
T Consensus 311 ~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 311 EARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 445789999999999999999999998876544
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.62 E-value=1.8e-15 Score=109.78 Aligned_cols=149 Identities=16% Similarity=0.108 Sum_probs=94.4
Q ss_pred EecCceEEE-E-EEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-------hhHhhhcCCcEE
Q psy2518 32 YRGAQACVI-T-FSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-------ITKAYYRGAQAC 101 (208)
Q Consensus 32 ~vG~s~~gk-~-~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-------~~~~~~~~~d~i 101 (208)
++|..|+|| + ++++....+. ....++...+........+. ...+.+|||+|...+.. ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 579999999 3 3333333222 11222211122333333221 45789999999765543 334578899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHH---HHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPE---EADLLSRALGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~---~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 178 (208)
++|+|.++..+..... |...... .+.|+++|+||+|+......... .........+.+++++||+++.|+++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 9999999987776554 3333332 27899999999998553322211 1112222335689999999999999999
Q ss_pred HHHHHH
Q psy2518 179 RYLTTK 184 (208)
Q Consensus 179 ~~i~~~ 184 (208)
+.+.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 998764
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.62 E-value=3.6e-15 Score=133.10 Aligned_cols=153 Identities=16% Similarity=0.050 Sum_probs=100.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhh--------hcchhHh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--------FDAITKA 93 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~ 93 (208)
....+|+++|..++|| +++++.+..+.. ...|++..+........++ ..+.+|||+|.+. +......
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 3457899999999999 467666554321 1223333333333334444 3588999999753 3334456
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2518 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDI 172 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 172 (208)
+++.+|++++|+|.++...... ..|...+.. .+.|+++|+||+|+.+.. ..... + ...+. ..+++||++|.
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~~~~---~~~~~-~-~~lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQASE---YDAAE-F-WKLGLGEPYPISAMHGR 422 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccccch---hhHHH-H-HHcCCCCeEEEECCCCC
Confidence 7899999999999986432211 234444433 279999999999985421 11122 2 12344 56799999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTTKCLS 187 (208)
Q Consensus 173 ~i~~~f~~i~~~~~~ 187 (208)
||+++|+.+++.+..
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999988754
No 191
>PRK00089 era GTPase Era; Reviewed
Probab=99.61 E-value=5.3e-15 Score=119.15 Aligned_cols=154 Identities=12% Similarity=0.143 Sum_probs=97.8
Q ss_pred eeeEEEecCceEEE--EEEeeecCcccccc--ccccccceeeEEEEECCeEEEEEEEeCCChhhh--------cchhHhh
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAH--SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF--------DAITKAY 94 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--------~~~~~~~ 94 (208)
.-.|+++|..++|| +++++.+..+.... ..|.. +....... ....++.+|||||.... .......
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~-~~i~~i~~--~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-HRIRGIVT--EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc-ccEEEEEE--cCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 44589999999999 35555555443221 11211 11111122 23367999999996332 2233446
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCC
Q psy2518 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDIN 173 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 173 (208)
+..+|++++|+|.++..+ ....++....+. .+.|+++|+||+|+...+....+....+....+ .+++++||+++.|
T Consensus 82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~-~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG--PGDEFILEKLKK-VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred HhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh-cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 789999999999998322 222233222221 258999999999996332333344555555455 4899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKCL 186 (208)
Q Consensus 174 i~~~f~~i~~~~~ 186 (208)
++++++.+.+.+.
T Consensus 159 v~~L~~~L~~~l~ 171 (292)
T PRK00089 159 VDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999988764
No 192
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.61 E-value=5.9e-15 Score=125.12 Aligned_cols=156 Identities=16% Similarity=0.094 Sum_probs=99.7
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCc-cccccccccccceeeEEEEECCeEEEEEEEeCCChh----------hhcchh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDS-FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE----------EFDAIT 91 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~----------~~~~~~ 91 (208)
...++|+++|..++|| ++++++... ......+....+.....+..++.. +.+|||+|.. .|....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--YTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--EEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3579999999999999 344444332 222222322234344444555544 6799999953 222211
Q ss_pred -HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH----hCCeEEEE
Q psy2518 92 -KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA----LGCRLMRT 166 (208)
Q Consensus 92 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~----~~~~~~e~ 166 (208)
..+++.+|++++|+|.+++.+.+... +...+.+. ..|+++++||+|+.++.. ..+....+... ..++++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~--~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~~ 324 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALEA--GRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVFI 324 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc--CCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEEE
Confidence 24678999999999999987776553 33333322 689999999999853211 11111122222 24689999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy2518 167 SVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~~ 186 (208)
||++|.|++++|+.+.+...
T Consensus 325 SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 325 SALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999877554
No 193
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.61 E-value=5e-15 Score=108.81 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=98.7
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcchhHhhhc
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDAITKAYYR 96 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~~~~~~~ 96 (208)
+|.++|++|+|| +++.+.++.+.....++.+.......+..++ .+.+|||+|. +.+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 478999999999 3555555677777788877655555554544 7899999983 334445555554
Q ss_pred ---CCcEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHHHHHHHH--HhCCeEEEEe
Q psy2518 97 ---GAQACVITFSTIDRDSF--EAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEEADLLSR--ALGCRLMRTS 167 (208)
Q Consensus 97 ---~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~~~~~~~--~~~~~~~e~S 167 (208)
..+++++++|.++..+. ..+.+|+... ..|+++++||+|+...... .........+ ....+++++|
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 45788999999876322 2334454432 4799999999998432111 1112222222 2234889999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy2518 168 VKEDINVNSIFRYLTTK 184 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~ 184 (208)
|+++.++.++++.+.+.
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 194
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.60 E-value=8e-15 Score=127.30 Aligned_cols=151 Identities=14% Similarity=0.062 Sum_probs=99.1
Q ss_pred eEEEecCceEEE--EEEeeecCccccc----cccccccceeeEEEE------------ECCeEEEEEEEeCCChhhhcch
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAA----HSWKMKVSIKRTIKE------------CEGEEVRLMLWDTAGQEEFDAI 90 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~----~~~t~~~~~~~~~~~------------~~~~~~~l~i~Dt~g~~~~~~~ 90 (208)
-|.++|..++|| +++++....+... +.+++|..+...... ++.....+.+|||||++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 388999999999 4566666666543 334455433222110 0011123889999999999999
Q ss_pred hHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC------------CHHHH---
Q psy2518 91 TKAYYRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV------------APEEA--- 152 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v------------~~~~~--- 152 (208)
+..+++.+|++++|+|+++ +++++.+..+ .. .+.|+++++||+|+...... ..+..
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~ 159 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQN 159 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHH
Confidence 9999999999999999997 5566554322 11 26899999999998531100 00000
Q ss_pred ---------HHHHH------------Hh--CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 153 ---------DLLSR------------AL--GCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 153 ---------~~~~~------------~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
.+++. .+ ..+++.+||++|+|++++...+....
T Consensus 160 ~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 160 LDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 01111 11 24899999999999999999876543
No 195
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.60 E-value=1.7e-15 Score=110.10 Aligned_cols=146 Identities=15% Similarity=0.206 Sum_probs=102.5
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhh------cchhHhhh--cC
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF------DAITKAYY--RG 97 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~------~~~~~~~~--~~ 97 (208)
++|.++|..++|| +|+++.+....-...|...++.....+.+++ ..+.+.|+||.-.. ......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999 5788777776554556666677777777777 45899999994222 12333444 58
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 98 AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
.|+++.|.|.++.+.- .....++.+. ..|++++.||+|...++.+.. ....+++.+|++++.+||+++.|++++
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQLLEL--GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDEL 152 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHH
T ss_pred CCEEEEECCCCCHHHH---HHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHH
Confidence 9999999999875432 2233344433 699999999999865444433 356788889999999999999999999
Q ss_pred HHHH
Q psy2518 178 FRYL 181 (208)
Q Consensus 178 f~~i 181 (208)
++.|
T Consensus 153 ~~~I 156 (156)
T PF02421_consen 153 KDAI 156 (156)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 9865
No 196
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.59 E-value=1.3e-14 Score=129.54 Aligned_cols=152 Identities=13% Similarity=0.160 Sum_probs=109.4
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch----------hHh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI----------TKA 93 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~----------~~~ 93 (208)
+.++|.++|..++|| +++++.+.... .....|+.+..+.-.++.....+++|||||...+... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 357899999999999 46766555442 2222444444454455556667899999998766431 223
Q ss_pred hh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518 94 YY--RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED 171 (208)
Q Consensus 94 ~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 171 (208)
++ ..+|++++|+|.++.+.. ..|..++.+. +.|++++.||+|+.+++.+ ..+.+++.+.+|++++++||++|
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 33 489999999999986542 2344444443 6899999999998665555 35567788889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTKC 185 (208)
Q Consensus 172 ~~i~~~f~~i~~~~ 185 (208)
.|++++.+.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999887654
No 197
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=5.6e-14 Score=102.59 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=109.7
Q ss_pred ceeeeEEEecCceEEE-EEEeeecCccc---------c----ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch
Q psy2518 25 DAITKAYYRGAQACVI-TFSTIDRDSFE---------A----AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI 90 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk-~~~~~~~~~f~---------~----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 90 (208)
....||++.|..++|| ++.+...++.. . ..+.|+..|+..-.+ +....+.++|||||++|.-+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHHHHHH
Confidence 4567999999999999 45444444442 1 122455555443322 22346899999999999999
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeEEEEec
Q psy2518 91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL--GCRLMRTSV 168 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sa 168 (208)
|....+++.+++++.|.+.+..+ .....+..+.. ...+|++|.+||.||... -+.+...++.+.. +.+.++.+|
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~-~~~ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS-RNPIPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh-ccCCCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeeeec
Confidence 99999999999999999999888 33333333332 224999999999999663 3444444444433 779999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy2518 169 KEDINVNSIFRYLTTK 184 (208)
Q Consensus 169 ~~~~~i~~~f~~i~~~ 184 (208)
.++.+..+.++.+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999988877665
No 198
>PRK10218 GTP-binding protein; Provisional
Probab=99.58 E-value=2.4e-14 Score=124.79 Aligned_cols=159 Identities=11% Similarity=0.108 Sum_probs=111.6
Q ss_pred eeeeEEEecCceEEE--EEEeeec--Ccccccc------------ccccccceeeEEEEECCeEEEEEEEeCCChhhhcc
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDR--DSFEAAH------------SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA 89 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~--~~f~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~ 89 (208)
...+|+++|..++|| ++.+++. +.|...+ ..+.|+.+..+...++.+.+++++|||+|+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 478999999999999 3344433 4444322 34567777777777777789999999999999999
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HhCC
Q psy2518 90 ITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV-APEEADLLSR-------ALGC 161 (208)
Q Consensus 90 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v-~~~~~~~~~~-------~~~~ 161 (208)
.+..+++.+|++++|+|.++....+. ..++...... +.|.+++.||+|+...+.. ..++...+.. ...+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~--gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY--GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc--CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 99999999999999999987543332 2233333222 6889999999998543211 1122222221 1246
Q ss_pred eEEEEecCCCC----------CHHHHHHHHHHHHHH
Q psy2518 162 RLMRTSVKEDI----------NVNSIFRYLTTKCLS 187 (208)
Q Consensus 162 ~~~e~Sa~~~~----------~i~~~f~~i~~~~~~ 187 (208)
+++.+||++|. ++..+|+.+++.+..
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 79999999998 588888887777643
No 199
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.57 E-value=9.3e-15 Score=114.68 Aligned_cols=96 Identities=24% Similarity=0.358 Sum_probs=80.4
Q ss_pred hhhcchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeE
Q psy2518 85 EEFDAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRL 163 (208)
Q Consensus 85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~ 163 (208)
+++..+.+.+++++|++++|||++++. ||+.+.+|+..+.. .++|+++|+||+||.+++.+..+.+..+. ..++++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~v 100 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQV 100 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCeE
Confidence 677888889999999999999999887 89999999986653 37999999999999665555445555554 478899
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q psy2518 164 MRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 164 ~e~Sa~~~~~i~~~f~~i~~ 183 (208)
+++||++|.|++++|+.+.+
T Consensus 101 ~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 101 LMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEecCCchhHHHHHhhhcC
Confidence 99999999999999998764
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.57 E-value=8.5e-15 Score=123.78 Aligned_cols=153 Identities=13% Similarity=0.093 Sum_probs=98.6
Q ss_pred ceeeeEEEecCceEEE-E-EEeeec--Ccc-----------------------------ccccccccccceeeEEEEECC
Q psy2518 25 DAITKAYYRGAQACVI-T-FSTIDR--DSF-----------------------------EAAHSWKMKVSIKRTIKECEG 71 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk-~-~~~~~~--~~f-----------------------------~~~~~~t~~~~~~~~~~~~~~ 71 (208)
...++++++|..++|| + ..+++. +.. .++....+..+..... +..
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~~~ 82 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--FET 82 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--Ecc
Confidence 4578999999999999 2 222221 111 1122233333444443 444
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCCC----
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQSV---- 146 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~~---- 146 (208)
..+.+.||||+|++.|.......++.+|++++|+|.++.+++.... .+...+.+.....|+++++||+|+.+...
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHH
Confidence 4568999999999988766666788999999999999885432111 11112223333467999999999853211
Q ss_pred CCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy2518 147 VAPEEADLLSRALG-----CRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 147 v~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~ 179 (208)
...++..++++..+ ++++++||++|.|+.+++.
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 12345556666665 4799999999999997554
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.57 E-value=3.3e-14 Score=110.87 Aligned_cols=147 Identities=22% Similarity=0.213 Sum_probs=94.5
Q ss_pred eEEEecCceEEE-E-EEeeecCcc-ccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc-------chhHhhhcCC
Q psy2518 29 KAYYRGAQACVI-T-FSTIDRDSF-EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD-------AITKAYYRGA 98 (208)
Q Consensus 29 ki~~vG~s~~gk-~-~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~~~~~~~~~ 98 (208)
++.++|..++|| + ++++..... ...++.|. .+.....+.+++ ..+++|||||..... .....+++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 689999999999 3 444443331 12222221 233344445554 468999999974332 1233578999
Q ss_pred cEEEEEEeCCChh-hHHHHHHHHHH--------------------------------------------H----------
Q psy2518 99 QACVITFSTIDRD-SFEAAHSWKMK--------------------------------------------V---------- 123 (208)
Q Consensus 99 d~ii~v~d~~~~~-s~~~~~~~~~~--------------------------------------------~---------- 123 (208)
|++++|+|.+++. ..+.+...+.. .
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999998765 33322222211 0
Q ss_pred ------------HhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 124 ------------ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 124 ------------~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
.......|+++|+||+|+. +.+++..++.. .+++++||++|.|++++|+.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0000136899999999983 45566656553 4689999999999999999988754
No 202
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=4.4e-14 Score=117.49 Aligned_cols=160 Identities=19% Similarity=0.147 Sum_probs=106.2
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccc-cccc-cccccceeeEEEEECCeEEEEEEEeCCChhhhcc----hhH---
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA----ITK--- 92 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~~~--- 92 (208)
.+....|.++|..++|| +++.+...... ..|+ .|.. ...-.+..++ ...+.++||||...-.+ +..
T Consensus 156 lk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~--p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l 232 (390)
T PRK12298 156 LKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLV--PNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFL 232 (390)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccC--cEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHH
Confidence 34455799999999999 34444333221 1222 2222 1222233322 23489999999743211 222
Q ss_pred hhhcCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEE
Q psy2518 93 AYYRGAQACVITFSTI---DRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG--CRLM 164 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~ 164 (208)
..+..++++++|+|++ +.+.++....|+.++..+.. +.|+++|+||+|+.....+ .+...++.+..+ .+++
T Consensus 233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi 311 (390)
T PRK12298 233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVY 311 (390)
T ss_pred HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEE
Confidence 3478899999999998 55677777888888877643 6899999999998553322 233444555544 3789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q psy2518 165 RTSVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 165 e~Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
.+||+++.|++++++.+.+.+.+
T Consensus 312 ~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 312 LISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred EEECCCCcCHHHHHHHHHHHhhh
Confidence 99999999999999999988754
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.56 E-value=1.4e-14 Score=126.29 Aligned_cols=157 Identities=12% Similarity=0.096 Sum_probs=109.7
Q ss_pred eeEEEecCceEEE--EEEeeec--Ccccccc------------ccccccceeeEEEEECCeEEEEEEEeCCChhhhcchh
Q psy2518 28 TKAYYRGAQACVI--TFSTIDR--DSFEAAH------------SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT 91 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~--~~f~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~ 91 (208)
.+|+++|..++|| +..+++. +.|.... ....|+.+..+...+....+++++|||||+..|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 4789999999999 2333322 3333221 2234555666666666667889999999999999888
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HhCCeE
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV-APEEADLLSR-------ALGCRL 163 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v-~~~~~~~~~~-------~~~~~~ 163 (208)
..+++.+|++++|+|.++.. ......|+..+... +.|+++++||+|+.+.+.. ..++...+.. +..+++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 99999999999999998642 34445566655543 6899999999998543311 1222333322 234689
Q ss_pred EEEecCCCC----------CHHHHHHHHHHHHHH
Q psy2518 164 MRTSVKEDI----------NVNSIFRYLTTKCLS 187 (208)
Q Consensus 164 ~e~Sa~~~~----------~i~~~f~~i~~~~~~ 187 (208)
+.+||++|. |+..+|+.+++.+..
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 999999995 799999998887653
No 204
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.54 E-value=2.9e-14 Score=119.73 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=97.6
Q ss_pred ccceeeeEEEecCceEEE-EEEeeecCccccc------cccccccceeeEEE----------------EEC--C----eE
Q psy2518 23 EFDAITKAYYRGAQACVI-TFSTIDRDSFEAA------HSWKMKVSIKRTIK----------------ECE--G----EE 73 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~------~~~t~~~~~~~~~~----------------~~~--~----~~ 73 (208)
+....+++.++|..++|| ++...+.+.+.+. ...|+...+....+ ..+ + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 445579999999999999 3322223322221 12333222111110 001 1 13
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR----DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV-- 147 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v-- 147 (208)
..+.+|||||++.|..........+|++++|+|++++ ++.+.+.. + ......|+++|+||+|+.++...
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~----l-~~~~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA----L-DIIGIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH----H-HHcCCCcEEEEEEeeccccchhHHH
Confidence 6799999999998876555555678999999999964 33333321 1 12223478999999998553221
Q ss_pred CHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 148 APEEADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 148 ~~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
..++...+++.. +.+++++||++|.|++++++.+.+.+.
T Consensus 160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 112333344332 468999999999999999999887653
No 205
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.53 E-value=2.2e-14 Score=108.39 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=99.0
Q ss_pred eeeeEEEecCceEEEE--EEeeecCc------------------cccccccccccceeeEEEEECCeEEEEEEEeCCChh
Q psy2518 26 AITKAYYRGAQACVIT--FSTIDRDS------------------FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE 85 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk~--~~~~~~~~------------------f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 85 (208)
..+.|.++|..++||+ +.++.... ...+....+..+.....+..+.....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4678999999999992 22221111 001111112222222222212566779999999999
Q ss_pred hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC--CCCHHHHHHHHHHhC---
Q psy2518 86 EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS--VVAPEEADLLSRALG--- 160 (208)
Q Consensus 86 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~--~v~~~~~~~~~~~~~--- 160 (208)
.|.......++.+|++|+|+|..+...... ...+..+... +.|++++.||+|+.+.+ .+..+....+.+..+
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ceeecccceecccccceeeeeccccccccc-cccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 998888888999999999999987644332 2223333332 68899999999985211 011111112333332
Q ss_pred ---CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 161 ---CRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 161 ---~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
++++.+||++|.|++++++.+.+.++
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 37999999999999999999988764
No 206
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.51 E-value=1e-13 Score=121.43 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=97.9
Q ss_pred eEEEecCceEEE--EEEeee---cCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 29 KAYYRGAQACVI--TFSTID---RDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~---~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
-|.++|..++|| ++.++. .+.+.++....+.++.....+.. ++. .+.+|||||+++|.......+.++|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 467889999999 233333 25555554333333443333333 333 3799999999999776677789999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCCC--HHHHHHHHHHhC---CeEEEEecCCCCC
Q psy2518 103 ITFSTID---RDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVVA--PEEADLLSRALG---CRLMRTSVKEDIN 173 (208)
Q Consensus 103 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v~--~~~~~~~~~~~~---~~~~e~Sa~~~~~ 173 (208)
+|+|.++ +++.+.+. +.... +.| +++|.||+|+.++.... .++..++....+ .+++++||++|.|
T Consensus 80 LVVda~eg~~~qT~ehl~-----il~~l-gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 80 LVVACDDGVMAQTREHLA-----ILQLT-GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEEECCCCCcHHHHHHHH-----HHHHc-CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 9999987 44444332 12222 345 67999999985422111 233444444444 5899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKC 185 (208)
Q Consensus 174 i~~~f~~i~~~~ 185 (208)
++++++.+.+..
T Consensus 154 I~~L~~~L~~~~ 165 (614)
T PRK10512 154 IDALREHLLQLP 165 (614)
T ss_pred CHHHHHHHHHhh
Confidence 999999887643
No 207
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.51 E-value=4.2e-14 Score=118.73 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=77.6
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHH
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APE 150 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~ 150 (208)
...+.+|||||++.|.......+..+|++++|+|.++........+.+..+ ......|++++.||+|+.+.... ..+
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~ 157 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYE 157 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHH
Confidence 467899999999999887777788999999999999643111112222222 22223578999999998542211 123
Q ss_pred HHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 151 EADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 151 ~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
+...+.... +++++++||++|.|++++++.+...+.
T Consensus 158 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 158 EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 333333332 568999999999999999999887653
No 208
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.49 E-value=7.1e-14 Score=107.62 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=75.1
Q ss_pred eEEEecCceEEE--EEEeeecCccccc-----------------cccccccceeeEEEEE-----CCeEEEEEEEeCCCh
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAA-----------------HSWKMKVSIKRTIKEC-----EGEEVRLMLWDTAGQ 84 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~-----------------~~~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~g~ 84 (208)
+|+++|..++|| +..++....+... .....|+.+....+.+ ++..+.+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999 2333333222111 0112233332222222 466789999999999
Q ss_pred hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
..|......+++.+|++++|+|.++..++.. ..|+...... +.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECcccC
Confidence 9998888889999999999999988776643 3444443322 58999999999974
No 209
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.49 E-value=8.8e-14 Score=117.62 Aligned_cols=112 Identities=18% Similarity=0.161 Sum_probs=73.8
Q ss_pred EECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC-
Q psy2518 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV- 146 (208)
Q Consensus 68 ~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~- 146 (208)
.++...+.+.+|||||++.|.......++.+|++++|+|.+++.++.....+...+.......|+++++||+|+.+...
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 157 (425)
T PRK12317 78 KFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEK 157 (425)
T ss_pred EEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHH
Confidence 3444567899999999988766555557899999999999873222222122222222222356899999999854111
Q ss_pred ---CCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy2518 147 ---VAPEEADLLSRALG-----CRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 147 ---v~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~ 179 (208)
...++..++.+..+ ++++++||++|.|+++++.
T Consensus 158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11234455555555 4699999999999998654
No 210
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.48 E-value=1.1e-13 Score=98.58 Aligned_cols=135 Identities=15% Similarity=0.093 Sum_probs=92.6
Q ss_pred eeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh----hhhcchhHhhhcCCcEEE
Q psy2518 28 TKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----EEFDAITKAYYRGAQACV 102 (208)
Q Consensus 28 ~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----~~~~~~~~~~~~~~d~ii 102 (208)
=||+++|.+++|| ++.+.+.+... .|..|..+.+. =.+.||||. ..+.+..-....+||+++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 3799999999999 44333333222 45555432222 245899984 233333444567999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~i 181 (208)
++.|.+++.+.-. ..+.+.. +.|+|-|.||+|+.. .....+.++++.+..|+ +.|++|+.+|+||+++.+.|
T Consensus 69 ll~dat~~~~~~p-----P~fa~~f-~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASMF-NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred EEecCCCCCccCC-----chhhccc-CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence 9999998754211 1111111 689999999999963 23456777888888898 78999999999999999876
Q ss_pred H
Q psy2518 182 T 182 (208)
Q Consensus 182 ~ 182 (208)
-
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 3
No 211
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.47 E-value=5.1e-13 Score=116.45 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=96.0
Q ss_pred eeEEEecCceEEE--EEEeeecCcccc----ccccccccceeeEEEEE--CCeEE----------EEEEEeCCChhhhcc
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEA----AHSWKMKVSIKRTIKEC--EGEEV----------RLMLWDTAGQEEFDA 89 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~----~~~~t~~~~~~~~~~~~--~~~~~----------~l~i~Dt~g~~~~~~ 89 (208)
-.|.++|..++|| ++.++....+.. .+.+++|..+....... .+..+ .+.+|||||++.|..
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 86 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN 86 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH
Confidence 3589999999999 344443333222 22345554433221100 11111 268999999999999
Q ss_pred hhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--C-----------H---H
Q psy2518 90 ITKAYYRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--A-----------P---E 150 (208)
Q Consensus 90 ~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~-----------~---~ 150 (208)
++...++.+|++++|+|.++ ++++..+..+ .. .+.|+++++||+|+...-.. . . +
T Consensus 87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~ 160 (586)
T PRK04004 87 LRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQ 160 (586)
T ss_pred HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHH
Confidence 88888999999999999997 6666655432 11 26899999999998421000 0 0 0
Q ss_pred H-------HHHHHHHh---------------CCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 151 E-------ADLLSRAL---------------GCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 151 ~-------~~~~~~~~---------------~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
. ........ .++++++||++|.|+++++..+...
T Consensus 161 ~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 161 ELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 0 00011111 2478999999999999999887643
No 212
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.46 E-value=1.2e-13 Score=110.18 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=91.4
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccc----------cccccccceeeEEEEECCeEEEEEEEeCCChhhh-------
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAA----------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF------- 87 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~------- 87 (208)
.++|+++|.+|+|| ++++++...+... ..+|++.+.....+..+|..+.+.+|||+|...+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999 4566666666543 4667766767777777899999999999993211
Q ss_pred -------------------cchhHhhhc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC--
Q psy2518 88 -------------------DAITKAYYR--GAQACVITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD-- 143 (208)
Q Consensus 88 -------------------~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~-- 143 (208)
...+...+. .+|+++++.+.+.. .+... ...+..+. ...|+++|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHH
Confidence 111112333 46777777776641 12111 22233333 2689999999999844
Q ss_pred CCCCCHHHHHHHHHHhCCeEEEEecCC
Q psy2518 144 QSVVAPEEADLLSRALGCRLMRTSVKE 170 (208)
Q Consensus 144 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 170 (208)
+.....+.+.+.+..+++++|......
T Consensus 160 e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 160 ELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 222345556677778899988776644
No 213
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.45 E-value=8.1e-13 Score=103.24 Aligned_cols=111 Identities=15% Similarity=0.136 Sum_probs=75.1
Q ss_pred eEEEecCceEEEE--EEeeecC--------------ccccc--cccccccceeeEEEEECCeEEEEEEEeCCChhhhcch
Q psy2518 29 KAYYRGAQACVIT--FSTIDRD--------------SFEAA--HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI 90 (208)
Q Consensus 29 ki~~vG~s~~gk~--~~~~~~~--------------~f~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 90 (208)
+|.++|..++||+ ..+++.. .+.+. .....|..+......+..+.+++++|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4789999999992 2222211 01010 0112233334444555556678999999999999888
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
...+++.+|++++|+|.++..... ...|+..+.+. +.|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~~--~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRKL--NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHHc--CCCEEEEEECcccc
Confidence 889999999999999999875543 34455544433 68999999999985
No 214
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.45 E-value=1.7e-13 Score=105.08 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=68.1
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC----CC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV----VA 148 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~----v~ 148 (208)
...+.+|||||++.|.......++.+|++++|+|.+++..-+.. .... +.+.....++++|.||+|+..... ..
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~-~~~~~~~~~iIvviNK~D~~~~~~~~~~~i 153 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSY-ILSLLGIRHVVVAVNKMDLVDYSEEVFEEI 153 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHH-HHHHcCCCcEEEEEEchhcccCCHHHHHHH
Confidence 44678999999998876666678999999999999875322211 1111 222222345788999999854211 01
Q ss_pred HHHHHHHHHHhCC---eEEEEecCCCCCHHHH
Q psy2518 149 PEEADLLSRALGC---RLMRTSVKEDINVNSI 177 (208)
Q Consensus 149 ~~~~~~~~~~~~~---~~~e~Sa~~~~~i~~~ 177 (208)
.++..++.+.++. +++.+||++|.|+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 154 VADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 2234445556664 5899999999998854
No 215
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.40 E-value=4.1e-13 Score=94.08 Aligned_cols=111 Identities=18% Similarity=0.140 Sum_probs=83.2
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccc-cccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
+|++++|++|+|| ++.++....|...+. +|++ +..+...++++++++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 5899999999999 456777777766555 5554 334455678899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 175 (208)
|+.+++++++.+ |...+....+ +.|.++++||.|+.+++.+..+++. +++++||++|.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999999876 8777665544 7889999999998554444443332 45678999999884
No 216
>COG1159 Era GTPase [General function prediction only]
Probab=99.37 E-value=4.4e-12 Score=99.68 Aligned_cols=158 Identities=11% Similarity=0.118 Sum_probs=101.0
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhh--------hcchhHhhh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--------FDAITKAYY 95 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~~~ 95 (208)
+.--|.++|..++|| +++++++....-..+-........+-+ +..++.++.+.||||.-+ ........+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI-~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-VTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEE-EEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 345688999999999 456666665543222111111122222 223377899999999532 233444568
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCH
Q psy2518 96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINV 174 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i 174 (208)
+++|+++||.|.++...- -.+|+-+..+. .+.|++++.||.|..+......+....+...... ..+++||+.|.|+
T Consensus 84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk~-~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~ 160 (298)
T COG1159 84 KDVDLILFVVDADEGWGP--GDEFILEQLKK-TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNV 160 (298)
T ss_pred ccCcEEEEEEeccccCCc--cHHHHHHHHhh-cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCH
Confidence 899999999999985332 23333333322 2579999999999865443223333333344444 8899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKCLS 187 (208)
Q Consensus 175 ~~~f~~i~~~~~~ 187 (208)
+.+.+.+...+.+
T Consensus 161 ~~L~~~i~~~Lpe 173 (298)
T COG1159 161 DTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHHhCCC
Confidence 9999998887653
No 217
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.34 E-value=1.4e-12 Score=100.89 Aligned_cols=154 Identities=14% Similarity=0.173 Sum_probs=94.1
Q ss_pred eEEEecCceEEE-EEEeeecCcccccc----ccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-----hhHhhhcCC
Q psy2518 29 KAYYRGAQACVI-TFSTIDRDSFEAAH----SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-----ITKAYYRGA 98 (208)
Q Consensus 29 ki~~vG~s~~gk-~~~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-----~~~~~~~~~ 98 (208)
||+++|.+++|| +.++..-..+.+.. .+|+.++ ...+. ....+.+++||+||+..+.. .....++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve--~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE--KSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEE--EEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCce--EEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 799999999999 33332233333322 2444322 22222 23455799999999965533 356678999
Q ss_pred cEEEEEEeCCChhhH---HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--CCCC----HHHHHHHHHHhC---CeEEEE
Q psy2518 99 QACVITFSTIDRDSF---EAAHSWKMKVENECGEIPTVLVQNKIDLLDQ--SVVA----PEEADLLSRALG---CRLMRT 166 (208)
Q Consensus 99 d~ii~v~d~~~~~s~---~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~--~~v~----~~~~~~~~~~~~---~~~~e~ 166 (208)
.++|+|+|+.+.+-. ..+...+..+.+..+++.+-+..+|.|+..+ +... .+...+.+...+ +.++.+
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T 157 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT 157 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence 999999999855433 3345566667778889999999999998431 1111 122223334445 678889
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy2518 167 SVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~~ 186 (208)
|.-+ ..+.+.|..+++.+.
T Consensus 158 SI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 158 SIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp -TTS-THHHHHHHHHHHTTS
T ss_pred cCcC-cHHHHHHHHHHHHHc
Confidence 9887 679999999998865
No 218
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.32 E-value=3.7e-12 Score=98.47 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=66.7
Q ss_pred CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD-------SFEAAHSWKMKVENECGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~ 143 (208)
.....+.+|||+|+..|.......++.+|++++|+|.++.. ..+....| .. .......|++++.||+|+..
T Consensus 74 ~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 74 TEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LL-ARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred eCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HH-HHHcCCCeEEEEEEcccccc
Confidence 34567999999999887766666778899999999999842 11112222 11 22222468999999999853
Q ss_pred CCCCCH-------HHHHHHHHHhC-----CeEEEEecCCCCCHH
Q psy2518 144 QSVVAP-------EEADLLSRALG-----CRLMRTSVKEDINVN 175 (208)
Q Consensus 144 ~~~v~~-------~~~~~~~~~~~-----~~~~e~Sa~~~~~i~ 175 (208)
. ..+. ++...+.+..+ ++++.+||++|.|++
T Consensus 152 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 152 V-NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred c-cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 0111 12222333433 569999999999987
No 219
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.31 E-value=1.1e-11 Score=96.10 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=68.8
Q ss_pred EEEEEEeCCChhhhcchhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYR--GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE 151 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~ 151 (208)
..+.+.||||+++|.......+. .+|++++|+|.+....-. ...++..+... +.|+++|.||+|+.++... .+.
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~-~~~ 159 (224)
T cd04165 84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL--NIPVFVVVTKIDLAPANIL-QET 159 (224)
T ss_pred cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEECccccCHHHH-HHH
Confidence 46889999999988664444443 689999999988654322 22333333332 5899999999998442211 111
Q ss_pred HHHHHHHh-----------------------------CCeEEEEecCCCCCHHHHHHHHH
Q psy2518 152 ADLLSRAL-----------------------------GCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 152 ~~~~~~~~-----------------------------~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
..++.+.+ ..++|.+||.+|.|++++...+.
T Consensus 160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11121111 13899999999999999987654
No 220
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.30 E-value=2.5e-11 Score=100.40 Aligned_cols=147 Identities=16% Similarity=0.104 Sum_probs=103.8
Q ss_pred eeEEEecCceEEE--EEEeeecCccccc-cccccccceeeEEEEECCeEEEEEEEeCCChhhhc---------chhHhhh
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAA-HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD---------AITKAYY 95 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~~~~ 95 (208)
-.|+++|..+||| +|+|+......-. -.|.+.-|.......+.+.+ +.+.||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 4699999999999 5788877765532 22333346666667777766 8999999976322 2233567
Q ss_pred cCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2518 96 RGAQACVITFSTIDRDSFE--AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDI 172 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 172 (208)
..||++|||+|....-+-. .+.+|+. ..+.|+++|.||+|-. ..++.......+|+ +.+.+||..|.
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr-----~~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~ 151 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR-----RSKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGR 151 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhcc
Confidence 8999999999987743322 2233332 2268999999999963 22333333445677 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTTKCL 186 (208)
Q Consensus 173 ~i~~~f~~i~~~~~ 186 (208)
|+.++.+.++..+.
T Consensus 152 Gi~dLld~v~~~l~ 165 (444)
T COG1160 152 GIGDLLDAVLELLP 165 (444)
T ss_pred CHHHHHHHHHhhcC
Confidence 99999999999874
No 221
>PRK13351 elongation factor G; Reviewed
Probab=99.28 E-value=3.5e-11 Score=107.43 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=78.3
Q ss_pred ceeeeEEEecCceEEEE--EEeeecCc-------------ccc-------ccccccccceeeEEEEECCeEEEEEEEeCC
Q psy2518 25 DAITKAYYRGAQACVIT--FSTIDRDS-------------FEA-------AHSWKMKVSIKRTIKECEGEEVRLMLWDTA 82 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk~--~~~~~~~~-------------f~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 82 (208)
....+|.++|..++||+ +.+++... +.. ++..|+... ...+....+.+++||||
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~----~~~~~~~~~~i~liDtP 81 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA----ATSCDWDNHRINLIDTP 81 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc----eEEEEECCEEEEEEECC
Confidence 45789999999999992 23332210 110 233344322 22333346789999999
Q ss_pred ChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518 83 GQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 83 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~ 143 (208)
|+..|......+++.+|++++|+|.++..+......|. .+... +.|+++++||+|+..
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~~--~~p~iiviNK~D~~~ 139 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADRY--GIPRLIFINKMDRVG 139 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHhc--CCCEEEEEECCCCCC
Confidence 99999888899999999999999999887776655553 33222 689999999999853
No 222
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.28 E-value=2e-11 Score=92.92 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=92.4
Q ss_pred eeEEEecCceEEE--EEEeeecCcccccccccccc-cee--eEEEEECCeEEEEEEEeCCChhhhcch-----hHhhhcC
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKV-SIK--RTIKECEGEEVRLMLWDTAGQEEFDAI-----TKAYYRG 97 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~-~~~--~~~~~~~~~~~~l~i~Dt~g~~~~~~~-----~~~~~~~ 97 (208)
+||+++|++|+|| +++.+.+..+.....++.+. +.. ...+.. +....+.+|||+|....... ....+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 6899999999999 35555555444433333331 111 111111 11236899999997432221 2223678
Q ss_pred CcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCCCC----C---CHHH----HHHHHH----HhC-
Q psy2518 98 AQACVITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQSV----V---APEE----ADLLSR----ALG- 160 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~~~----v---~~~~----~~~~~~----~~~- 160 (208)
+|+++++.+ .+|... ..|+..+.+. ..|+++|+||+|+..... . ..++ .++.+. ..+
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 899888843 224333 3455555544 579999999999832111 0 1111 111111 112
Q ss_pred -C-eEEEEecC--CCCCHHHHHHHHHHHHHHHhhh
Q psy2518 161 -C-RLMRTSVK--EDINVNSIFRYLTTKCLSELRQ 191 (208)
Q Consensus 161 -~-~~~e~Sa~--~~~~i~~~f~~i~~~~~~~~~~ 191 (208)
. ++|-+|+. .+.++..+.+.++..+.+..+.
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 2 78999998 5789999999999998876544
No 223
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.27 E-value=4.2e-11 Score=99.37 Aligned_cols=156 Identities=15% Similarity=0.057 Sum_probs=103.4
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch--------
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-------- 90 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-------- 90 (208)
+..+.-+|++++|..++|| +++.+.+..-. -+..|...-|+....+.++|.+ +.+.||+|...-...
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeR 289 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIER 289 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHH
Confidence 3466789999999999999 34433332221 1122222347778888888877 799999996432221
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q psy2518 91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 170 (208)
....++.||.+++|+|.+.+.+-... ..+. ....+.|+++|.||.||..+.... ......+.+++.+||++
T Consensus 290 s~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~~~~~~i~v~NK~DL~~~~~~~-----~~~~~~~~~~i~iSa~t 360 (454)
T COG0486 290 AKKAIEEADLVLFVLDASQPLDKEDL-ALIE---LLPKKKPIIVVLNKADLVSKIELE-----SEKLANGDAIISISAKT 360 (454)
T ss_pred HHHHHHhCCEEEEEEeCCCCCchhhH-HHHH---hcccCCCEEEEEechhcccccccc-----hhhccCCCceEEEEecC
Confidence 23457899999999999986322221 1111 222278999999999996533211 11111234689999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy2518 171 DINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 171 ~~~i~~~f~~i~~~~~~~ 188 (208)
|.|++.+.+.+.+.+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999988877654
No 224
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.27 E-value=9.1e-11 Score=97.15 Aligned_cols=156 Identities=17% Similarity=0.094 Sum_probs=104.6
Q ss_pred eeeeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChh----------hhcch-h
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE----------EFDAI-T 91 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~----------~~~~~-~ 91 (208)
..+|++++|.-++|| +++++.++.-.- ...+....|-....+..++++ +.+.||+|.. .|... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 579999999999999 345544443331 112222235566667777777 6899999953 23222 1
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-Hh----CCeEEEE
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSR-AL----GCRLMRT 166 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-~~----~~~~~e~ 166 (208)
...+..||++++|.|.+.+.+-++.. ....+.+. ..+++++.||+|+-++.....++.+...+ .+ ..+.+.+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIEEA--GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHHc--CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 23577899999999999987655432 22223222 68999999999986654444454443332 22 2489999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy2518 167 SVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~~ 186 (208)
||++|.+++++|+.+.+..-
T Consensus 332 SA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EecCCCChHHHHHHHHHHHH
Confidence 99999999999998776543
No 225
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.27 E-value=3.9e-11 Score=95.33 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=59.0
Q ss_pred ceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518 61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKID 140 (208)
Q Consensus 61 ~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~D 140 (208)
.+......++...+++++|||||+.+|.......++.+|++++|+|.++..... ...++..... .+.|+++++||+|
T Consensus 58 si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D 134 (267)
T cd04169 58 SVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLD 134 (267)
T ss_pred CeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCc
Confidence 344455566667788999999999988877778899999999999998754322 2333333322 2689999999999
Q ss_pred CCC
Q psy2518 141 LLD 143 (208)
Q Consensus 141 l~~ 143 (208)
+..
T Consensus 135 ~~~ 137 (267)
T cd04169 135 REG 137 (267)
T ss_pred cCC
Confidence 844
No 226
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.26 E-value=1.9e-11 Score=94.44 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=59.8
Q ss_pred CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC-CCCCCCH
Q psy2518 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL-DQSVVAP 149 (208)
Q Consensus 71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~-~~~~v~~ 149 (208)
+..+.+++|||||++.|......+++.+|++++|+|+++..+.+....|. ..... +.|+++++||+|+. .+..++.
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~~--~~p~ilviNKiD~~~~e~~~~~ 146 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALKE--RVKPVLVINKIDRLILELKLSP 146 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHHc--CCCEEEEEECCCcchhhhcCCH
Confidence 45889999999999999998999999999999999999876665433322 22221 57999999999974 3344554
Q ss_pred HHH
Q psy2518 150 EEA 152 (208)
Q Consensus 150 ~~~ 152 (208)
+++
T Consensus 147 ~~~ 149 (222)
T cd01885 147 EEA 149 (222)
T ss_pred HHH
Confidence 443
No 227
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.26 E-value=7.1e-11 Score=89.67 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=88.0
Q ss_pred eeeEEEecCceEEEE--EEeeecC----------------ccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc
Q psy2518 27 ITKAYYRGAQACVIT--FSTIDRD----------------SFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD 88 (208)
Q Consensus 27 ~~ki~~vG~s~~gk~--~~~~~~~----------------~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~ 88 (208)
.++|.++|..++||+ ..+++.. ...++... |.........+.....++.+.||||+..|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~r--g~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKAR--GITINTAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhc--CccEEeeeeEecCCCeEEEEEECcCHHHHH
Confidence 368999999999992 2222211 00111112 222223334444455678999999998887
Q ss_pred chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCC---CHHHHHHHHHHhC----
Q psy2518 89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVV---APEEADLLSRALG---- 160 (208)
Q Consensus 89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v---~~~~~~~~~~~~~---- 160 (208)
......+..+|++++|+|.+..-.-+ ....+..+.+. +.| +|++.||+|+..+... ..++...+....+
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 77777888999999999998643222 12223333322 455 7889999998432211 1223444444443
Q ss_pred -CeEEEEecCCCCCHH
Q psy2518 161 -CRLMRTSVKEDINVN 175 (208)
Q Consensus 161 -~~~~e~Sa~~~~~i~ 175 (208)
++++.+||++|.|+.
T Consensus 157 ~v~iipiSa~~g~n~~ 172 (195)
T cd01884 157 NTPIVRGSALKALEGD 172 (195)
T ss_pred CCeEEEeeCccccCCC
Confidence 579999999999863
No 228
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.26 E-value=6.5e-11 Score=102.15 Aligned_cols=116 Identities=11% Similarity=0.073 Sum_probs=77.7
Q ss_pred cceeeeEEEecCceEEEE--EEeee--cCc------cc------------cccccccccceeeEEEEECCeEEEEEEEeC
Q psy2518 24 FDAITKAYYRGAQACVIT--FSTID--RDS------FE------------AAHSWKMKVSIKRTIKECEGEEVRLMLWDT 81 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk~--~~~~~--~~~------f~------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt 81 (208)
-.+..++.++|..++||+ ..+++ .+. .. .......|+.+......++.+.+++++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 356889999999999993 22221 110 00 001112244444555556556788999999
Q ss_pred CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 82 AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 82 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
||++.|......+++.+|++++|+|.++..... ...++...... +.|+++++||+|+.
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~~--~iPiiv~iNK~D~~ 144 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRLR--DTPIFTFINKLDRD 144 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHhc--CCCEEEEEECCccc
Confidence 999998887778899999999999998754322 23444333322 78999999999974
No 229
>KOG0462|consensus
Probab=99.25 E-value=8e-11 Score=98.91 Aligned_cols=112 Identities=18% Similarity=0.290 Sum_probs=88.6
Q ss_pred CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH
Q psy2518 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP 149 (208)
Q Consensus 70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~ 149 (208)
+|+.+.+++.||||+-.|.......+.-++++|+|+|.++.---+.+..++..+.. +..+|.|.||.|++..+ .
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDlp~ad---p 194 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDLPSAD---P 194 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCCCCCC---H
Confidence 58889999999999999999889999999999999999987666666555555544 67899999999996633 2
Q ss_pred HHHHHH-HHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518 150 EEADLL-SRAL---GCRLMRTSVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 150 ~~~~~~-~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
+..+.. -..+ ..+.+.+|||+|.|++++++.+++.+.-
T Consensus 195 e~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 195 ERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred HHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 333322 2223 3389999999999999999999998753
No 230
>PRK12736 elongation factor Tu; Reviewed
Probab=99.24 E-value=6.8e-11 Score=99.05 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=92.9
Q ss_pred ceeeeEEEecCceEEE-E-EEeeec----------------CccccccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518 25 DAITKAYYRGAQACVI-T-FSTIDR----------------DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE 86 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk-~-~~~~~~----------------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 86 (208)
...++|.++|....|| + ..++.. +...++....+ ........+......+.++||||+++
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~--T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGI--TINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCc--cEEEEeeEecCCCcEEEEEECCCHHH
Confidence 4578899999999999 2 222211 11111112222 22223334444455688999999998
Q ss_pred hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCCC---HHHHHHHHHHhC--
Q psy2518 87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVVA---PEEADLLSRALG-- 160 (208)
Q Consensus 87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v~---~~~~~~~~~~~~-- 160 (208)
|.......++.+|++++|+|.++...-+. ..++..+... +.| +|++.||+|+.++.... .++...+.+..+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 87666666788999999999986422211 2222223222 567 67889999985322211 224444544454
Q ss_pred ---CeEEEEecCCCC--------CHHHHHHHHHHHH
Q psy2518 161 ---CRLMRTSVKEDI--------NVNSIFRYLTTKC 185 (208)
Q Consensus 161 ---~~~~e~Sa~~~~--------~i~~~f~~i~~~~ 185 (208)
++++.+||++|. ++.++++.+.+.+
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 479999999983 4555555555443
No 231
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=1.7e-10 Score=95.69 Aligned_cols=115 Identities=18% Similarity=0.238 Sum_probs=93.2
Q ss_pred CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH
Q psy2518 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP 149 (208)
Q Consensus 70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~ 149 (208)
+|+.+.+++.||||+-.|.-.....+..+.++++|+|.++.-.-+.+.+.+..+.+ +..++-|.||.||+.. -++
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~A--dpe 146 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAA--DPE 146 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCC--CHH
Confidence 67899999999999999988888889999999999999998766666665666655 6789999999999652 234
Q ss_pred HHHHHHHHHhCC---eEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 150 EEADLLSRALGC---RLMRTSVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 150 ~~~~~~~~~~~~---~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
.-.++...-.|+ ..+.||||+|.||+++++.+++.+.-..
T Consensus 147 rvk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 147 RVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred HHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 444555556676 5799999999999999999999886433
No 232
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.24 E-value=6e-11 Score=99.41 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=87.7
Q ss_pred ceeeeEEEecCceEEE-E-EEeee----------------cCccccccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518 25 DAITKAYYRGAQACVI-T-FSTID----------------RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE 86 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk-~-~~~~~----------------~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 86 (208)
...++|.++|....|| + ..++. .+...++....+..+ ...+.++....++.+|||||+++
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchHH
Confidence 4578899999999999 2 22221 111122222222223 33444555566789999999998
Q ss_pred hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEE-EEEeCCCCCCCCCCC---HHHHHHHHHHhC--
Q psy2518 87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVA---PEEADLLSRALG-- 160 (208)
Q Consensus 87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pii-vvgnK~Dl~~~~~v~---~~~~~~~~~~~~-- 160 (208)
|..........+|++++|+|+++....+. .+.+..+... ..|.+ ++.||+|+.++.... .++..++++..+
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 87655555678899999999987322221 1222223222 46654 689999985432211 234555666654
Q ss_pred ---CeEEEEecCCCC
Q psy2518 161 ---CRLMRTSVKEDI 172 (208)
Q Consensus 161 ---~~~~e~Sa~~~~ 172 (208)
++++.+||++|.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 165 GDDTPIIRGSALKAL 179 (394)
T ss_pred ccCccEEECcccccc
Confidence 689999999885
No 233
>KOG0077|consensus
Probab=99.23 E-value=2.3e-11 Score=87.35 Aligned_cols=154 Identities=14% Similarity=0.207 Sum_probs=112.4
Q ss_pred cceeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 24 FDAITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
|.+.-|+++.|-.+.|| +++..+.+.-...+.||.-. .+..+.+. .++++.+|-+|+...+..|+.|+..+|+++
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHP--TSE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP--TSEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccccCCCcCC--ChHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 55677999999999999 45444455555566666531 12333444 456899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh--------------C---CeE
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL--------------G---CRL 163 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~--------------~---~~~ 163 (208)
+.+|..+.+-|.+.+.-++.+..... +.|+++.|||.|.+. ..++++......-. + +..
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC--cccHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 99999999999988777777665553 899999999999854 33444433211110 1 257
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q psy2518 164 MRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 164 ~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|.||...+.+--+.|.++.+
T Consensus 171 fmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEEEccCccceeeeehhh
Confidence 88999888887777776544
No 234
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.21 E-value=3.8e-11 Score=97.40 Aligned_cols=79 Identities=20% Similarity=0.168 Sum_probs=55.9
Q ss_pred EEEecCceEEE--EEEeeecCccc------cccccccccceeeEE---------------EEECC-eEEEEEEEeCCCh-
Q psy2518 30 AYYRGAQACVI--TFSTIDRDSFE------AAHSWKMKVSIKRTI---------------KECEG-EEVRLMLWDTAGQ- 84 (208)
Q Consensus 30 i~~vG~s~~gk--~~~~~~~~~f~------~~~~~t~~~~~~~~~---------------~~~~~-~~~~l~i~Dt~g~- 84 (208)
|.++|..++|| +|+++....+. .++.|++|..+.... ...++ ..+.+++|||+|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 46899999999 46777666643 345677775543221 11233 3478999999998
Q ss_pred ---hhhcchhHhh---hcCCcEEEEEEeCC
Q psy2518 85 ---EEFDAITKAY---YRGAQACVITFSTI 108 (208)
Q Consensus 85 ---~~~~~~~~~~---~~~~d~ii~v~d~~ 108 (208)
+++..+...+ ++.||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5566666665 89999999999997
No 235
>PRK12735 elongation factor Tu; Reviewed
Probab=99.21 E-value=1.2e-10 Score=97.61 Aligned_cols=155 Identities=12% Similarity=0.129 Sum_probs=93.0
Q ss_pred ceeeeEEEecCceEEE-E-EEeeec-------Cc---------cccccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518 25 DAITKAYYRGAQACVI-T-FSTIDR-------DS---------FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE 86 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk-~-~~~~~~-------~~---------f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 86 (208)
...++|.++|....|| + ..++.. .. ..++... |+........+.....++.++||||++.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--GiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKAR--GITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhc--CceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 5568899999999999 2 232222 11 1111122 2222223333444455689999999988
Q ss_pred hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEE-EEEeCCCCCCCCCC---CHHHHHHHHHHhC--
Q psy2518 87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVV---APEEADLLSRALG-- 160 (208)
Q Consensus 87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pii-vvgnK~Dl~~~~~v---~~~~~~~~~~~~~-- 160 (208)
|.......+..+|++++|+|..+...-+ ..+++..+... ..|.+ ++.||+|+.++... ..++...+...++
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 8766666778999999999998743222 22333333222 56755 57999998542211 1224444555543
Q ss_pred ---CeEEEEecCCCC----------CHHHHHHHHHHH
Q psy2518 161 ---CRLMRTSVKEDI----------NVNSIFRYLTTK 184 (208)
Q Consensus 161 ---~~~~e~Sa~~~~----------~i~~~f~~i~~~ 184 (208)
++++.+||++|. ++.++++.+...
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 578999999985 455666655544
No 236
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.20 E-value=5.9e-10 Score=101.99 Aligned_cols=103 Identities=20% Similarity=0.264 Sum_probs=72.9
Q ss_pred EEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC----
Q psy2518 76 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA---- 148 (208)
Q Consensus 76 l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~---- 148 (208)
+.+|||||++.|..+....++.+|++++|+|+++ +++++.+.. +... +.|+++++||+|+......+
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~----lk~~--~iPiIVViNKiDL~~~~~~~~~~~ 601 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINI----LRQY--KTPFVVAANKIDLIPGWNISEDEP 601 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHH----HHHc--CCCEEEEEECCCCccccccccchh
Confidence 8999999999998888888899999999999987 555554432 2221 68999999999985321110
Q ss_pred ---------HHHHHHH----------HHH-------------h--CCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 149 ---------PEEADLL----------SRA-------------L--GCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 149 ---------~~~~~~~----------~~~-------------~--~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
.....++ ..+ + .++++.+||++|.|++++...+...
T Consensus 602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0000111 011 1 2478999999999999999876544
No 237
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.17 E-value=2.6e-10 Score=95.89 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=67.7
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC---
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA--- 148 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~--- 148 (208)
...++.++||||++.|.......+..+|++++|+|.+....-+....|. +.......+++++.||+|+.+...-.
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLGIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcCCCcEEEEEEecccccchHHHHHH
Confidence 4457899999999998766666788999999999987653222111121 11222234688999999985422111
Q ss_pred -HHHHHHHHHHhC---CeEEEEecCCCCCHHHH
Q psy2518 149 -PEEADLLSRALG---CRLMRTSVKEDINVNSI 177 (208)
Q Consensus 149 -~~~~~~~~~~~~---~~~~e~Sa~~~~~i~~~ 177 (208)
.++...+.+..+ ++++++||++|.|+.+.
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 122223334444 36999999999999863
No 238
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.16 E-value=2.3e-10 Score=91.16 Aligned_cols=97 Identities=22% Similarity=0.315 Sum_probs=65.1
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE 151 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~ 151 (208)
..+.+.+|||||...|.......++.+|++++|+|.++.........|. .+... +.|.+++.||+|+... ...+.
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~--~~p~iivvNK~D~~~~--~~~~~ 136 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEA--GIPRIIFINKMDRERA--DFDKT 136 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEECCccCCC--CHHHH
Confidence 3467899999999888877888999999999999999876654433332 22222 6899999999998542 22333
Q ss_pred HHHHHHHhCCeEE--EEecCCCCC
Q psy2518 152 ADLLSRALGCRLM--RTSVKEDIN 173 (208)
Q Consensus 152 ~~~~~~~~~~~~~--e~Sa~~~~~ 173 (208)
...+...++.+++ .+...++.+
T Consensus 137 ~~~l~~~~~~~~~~~~ip~~~~~~ 160 (268)
T cd04170 137 LAALQEAFGRPVVPLQLPIGEGDD 160 (268)
T ss_pred HHHHHHHhCCCeEEEEecccCCCc
Confidence 4444445555443 333444433
No 239
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.14 E-value=1.2e-10 Score=80.06 Aligned_cols=137 Identities=16% Similarity=0.121 Sum_probs=91.7
Q ss_pred eEEEecCceEEEEEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChh----hhcchhHhhhcCCcEEEEE
Q psy2518 29 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE----EFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 29 ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~----~~~~~~~~~~~~~d~ii~v 104 (208)
|+.++|..|+||+-+.........-|..|..+++..+ -..||+|.- .+.+.......++|++++|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v 71 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVIIYV 71 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceeeee
Confidence 7899999999993221111122223555555443222 257899852 2223344456899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
-..++++|--. ..+.. ....|+|-|.+|.||.+. -..+..+.+..+.|. ++|++|+.++.|+++++..+..
T Consensus 72 ~~and~~s~f~-----p~f~~-~~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 72 HAANDPESRFP-----PGFLD-IGVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ecccCccccCC-----ccccc-ccccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 99999876311 11111 115679999999999653 345667778888888 8999999999999999998765
Q ss_pred H
Q psy2518 184 K 184 (208)
Q Consensus 184 ~ 184 (208)
.
T Consensus 144 ~ 144 (148)
T COG4917 144 L 144 (148)
T ss_pred h
Confidence 3
No 240
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.13 E-value=6.2e-10 Score=90.65 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=96.1
Q ss_pred CccccccccccccceeeEEE--------EECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh---------
Q psy2518 48 DSFEAAHSWKMKVSIKRTIK--------ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR--------- 110 (208)
Q Consensus 48 ~~f~~~~~~t~~~~~~~~~~--------~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~--------- 110 (208)
.-+.+.|.||.. |...... .+.-..+.+.+||++|+...+..|..++.+++++++|.|+++.
T Consensus 128 ri~~~~y~Pt~~-Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~ 206 (317)
T cd00066 128 RISDPDYIPTEQ-DILRARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES 206 (317)
T ss_pred HHhCCCCCCChh-HheeeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc
Confidence 344456666654 3322222 2223467799999999999999999999999999999999874
Q ss_pred -hhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCC----------------CCCCHHHHHHHHHH----------hCC
Q psy2518 111 -DSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQ----------------SVVAPEEADLLSRA----------LGC 161 (208)
Q Consensus 111 -~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~----------------~~v~~~~~~~~~~~----------~~~ 161 (208)
..+.+....+..+.+... +.|+++++||.|+-.+ .....+.+..+... ..+
T Consensus 207 ~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~ 286 (317)
T cd00066 207 TNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEI 286 (317)
T ss_pred chHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeE
Confidence 344444455555554432 7999999999996321 12234455544433 123
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518 162 RLMRTSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 162 ~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
..+.++|.+-.++..+|+.+.+.++..
T Consensus 287 ~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 287 YPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred EEEeccccchHHHHHHHHHHHHHHHHH
Confidence 457889999999999999998888764
No 241
>KOG1707|consensus
Probab=99.13 E-value=2.9e-10 Score=96.17 Aligned_cols=169 Identities=18% Similarity=0.198 Sum_probs=123.9
Q ss_pred eeccCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHh
Q psy2518 16 WDTAGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93 (208)
Q Consensus 16 ~d~~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~ 93 (208)
.|..-+..-+.++++.++|+.++|| .+..|.++.+...+..+....+....+...|+.-.+.+-|.+.. ...-+...
T Consensus 414 ~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k 492 (625)
T KOG1707|consen 414 LDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK 492 (625)
T ss_pred hhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc
Confidence 3433344568899999999999999 46777788888877788777777777777788877888887754 22222222
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2518 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDI 172 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 172 (208)
. ..+|+++++||.+++.||..+...++.-... ...|+++|++|+|+.+..+...-+-.+++.++++ +-+..|.++..
T Consensus 493 e-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~ 570 (625)
T KOG1707|consen 493 E-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLS 570 (625)
T ss_pred c-ceeeeEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCC
Confidence 2 7899999999999999998876554444333 4799999999999966443222222789999999 56778888544
Q ss_pred CHHHHHHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTTKCLSE 188 (208)
Q Consensus 173 ~i~~~f~~i~~~~~~~ 188 (208)
. .++|..|+..+...
T Consensus 571 s-~~lf~kL~~~A~~P 585 (625)
T KOG1707|consen 571 S-NELFIKLATMAQYP 585 (625)
T ss_pred C-chHHHHHHHhhhCC
Confidence 4 89999998876543
No 242
>KOG0090|consensus
Probab=99.12 E-value=4.6e-09 Score=78.83 Aligned_cols=150 Identities=13% Similarity=0.164 Sum_probs=94.5
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc---CCcEEEE
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR---GAQACVI 103 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~---~~d~ii~ 103 (208)
-|+++|.+++|| +|.++.++.+...+.+-.. ..-.+.++... ..+.|.||+.+.+.-...+++ .+-+++|
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 589999999999 5788888866554433221 11222222222 799999999998876666766 7999999
Q ss_pred EEeCCC-hhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCC------CCHHHHHHHH----------------
Q psy2518 104 TFSTID-RDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSV------VAPEEADLLS---------------- 156 (208)
Q Consensus 104 v~d~~~-~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~------v~~~~~~~~~---------------- 156 (208)
|+|..- ......+.+++=.+.-.+ +.+|+++++||.|+--.+. .-+.|...+.
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 999753 333444444443333222 2789999999999842110 0011111110
Q ss_pred ----------------HHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 157 ----------------RALGCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 157 ----------------~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
....+.|.++|++++ +++++-+++.+.
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 002246889999998 899998887654
No 243
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.10 E-value=8.6e-10 Score=83.36 Aligned_cols=94 Identities=19% Similarity=0.152 Sum_probs=67.2
Q ss_pred hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCC
Q psy2518 87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLS-----RALGC 161 (208)
Q Consensus 87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~ 161 (208)
+...+..+++++|++++|+|++++.. .|...+.....+.|+++|+||+|+..+ ....+....+. +..+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~ 97 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLGL 97 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcCC
Confidence 57778889999999999999987642 122222222236899999999998643 33344444443 22333
Q ss_pred ---eEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 162 ---RLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 162 ---~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
.++.+||++|.|++++++.+.+.+.
T Consensus 98 ~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 98 KPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999988653
No 244
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.09 E-value=4.1e-10 Score=96.32 Aligned_cols=107 Identities=20% Similarity=0.144 Sum_probs=67.7
Q ss_pred CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH
Q psy2518 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP 149 (208)
Q Consensus 70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~ 149 (208)
.....++.+|||||++.|.......++.+|++++|+|.+....-.....|. +.......|++++.||+|+.+.+.-..
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~lg~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLLGIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHhCCCceEEEEEeeccccchhHHH
Confidence 344557899999999988665555679999999999997643211111111 111222357899999999854221111
Q ss_pred H----HHHHHHHHhC----CeEEEEecCCCCCHHHHH
Q psy2518 150 E----EADLLSRALG----CRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 150 ~----~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f 178 (208)
+ +...+.+..+ .+++.+||++|.|+.++-
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 1 1222233333 579999999999998653
No 245
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=4.1e-09 Score=88.85 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=93.9
Q ss_pred EEEecCceEEE-EEE-eeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 30 AYYRGAQACVI-TFS-TIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 30 i~~vG~s~~gk-~~~-~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
|.++|.---|| +++ .+-.....+...-.+.=++.-..+..+ +..-.+.+.||||++-|..++..=.+-+|++++|.+
T Consensus 8 VtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa 87 (509)
T COG0532 8 VTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVA 87 (509)
T ss_pred EEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEE
Confidence 66778877788 222 111222222222222112223333443 123468999999999999999998999999999999
Q ss_pred CCCh---hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC---------CeEEEEecCCCCCH
Q psy2518 107 TIDR---DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG---------CRLMRTSVKEDINV 174 (208)
Q Consensus 107 ~~~~---~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~e~Sa~~~~~i 174 (208)
.++. ++.+.+.. .+.. +.|++++.||.|..+. .......-..++| ..++.+||++|.|+
T Consensus 88 ~dDGv~pQTiEAI~h----ak~a--~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 88 ADDGVMPQTIEAINH----AKAA--GVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred ccCCcchhHHHHHHH----HHHC--CCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence 9984 44433321 1111 7999999999998642 2222222222222 36899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKCL 186 (208)
Q Consensus 175 ~~~f~~i~~~~~ 186 (208)
.+|+..++-...
T Consensus 159 ~eLL~~ill~ae 170 (509)
T COG0532 159 DELLELILLLAE 170 (509)
T ss_pred HHHHHHHHHHHH
Confidence 999998776543
No 246
>COG2262 HflX GTPases [General function prediction only]
Probab=99.03 E-value=4.1e-09 Score=86.33 Aligned_cols=155 Identities=19% Similarity=0.131 Sum_probs=99.4
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccc--cccccccceeeEEEEECCeEEEEEEEeCCChh---------hhcchh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAA--HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE---------EFDAIT 91 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~---------~~~~~~ 91 (208)
.....|.++|=++.|| +|+++........ .-.|. |-..+.+.+.+ ...+.+-||.|-- -|.+ .
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATL--dpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-T 265 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATL--DPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-T 265 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccc--cCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-H
Confidence 3456789999999999 3554433222211 22333 33455566654 2347889999942 2222 2
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 170 (208)
-.....||+++.|.|.+++...+.+..-..-+....- .+|+++|.||.|+..+.. .........+ ..+.+||++
T Consensus 266 LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~ 340 (411)
T COG2262 266 LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKT 340 (411)
T ss_pred HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEecc
Confidence 2345789999999999999766666544444444322 789999999999744222 1111112122 589999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy2518 171 DINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 171 ~~~i~~~f~~i~~~~~~~ 188 (208)
|.|++.+.+.|.+.+...
T Consensus 341 ~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 341 GEGLDLLRERIIELLSGL 358 (411)
T ss_pred CcCHHHHHHHHHHHhhhc
Confidence 999999999999887644
No 247
>PRK00098 GTPase RsgA; Reviewed
Probab=99.03 E-value=4e-09 Score=85.24 Aligned_cols=87 Identities=25% Similarity=0.322 Sum_probs=65.5
Q ss_pred hhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q psy2518 94 YYRGAQACVITFSTIDRDSFEA-AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~ 172 (208)
..+++|++++|+|+++++++.. +.+|+..+.. .+.|+++|+||+||.+... ..++..+..+..+++++++||+++.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 3589999999999988876555 4788776654 2689999999999953221 1222334455668899999999999
Q ss_pred CHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTT 183 (208)
Q Consensus 173 ~i~~~f~~i~~ 183 (208)
|++++++.+..
T Consensus 154 gi~~L~~~l~g 164 (298)
T PRK00098 154 GLDELKPLLAG 164 (298)
T ss_pred cHHHHHhhccC
Confidence 99999988754
No 248
>KOG0705|consensus
Probab=99.03 E-value=3.5e-09 Score=89.22 Aligned_cols=168 Identities=17% Similarity=0.219 Sum_probs=131.3
Q ss_pred EEeeccCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchh
Q psy2518 14 MLWDTAGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT 91 (208)
Q Consensus 14 ~~~d~~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~ 91 (208)
.=|.+..+ -..+|+-+||..+.|| +..|++.+.|.....|--| .+.+++.++++...+.+.|.+|. .-
T Consensus 20 qewtlsrs---ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~-----~~ 89 (749)
T KOG0705|consen 20 QEWTLSRS---IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGH-----PD 89 (749)
T ss_pred cceeeecc---cchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCC-----ch
Confidence 34555544 4568999999999999 5789999999887777654 45677888999999999999883 23
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCC--CCCCCCHHHHHHHHHH-hCCeEEEE
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLL--DQSVVAPEEADLLSRA-LGCRLMRT 166 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~--~~~~v~~~~~~~~~~~-~~~~~~e~ 166 (208)
.+|..++|++||||.+.+..+|+.+..+...+..+.. ..|++++|++.-.. ..+.+....+.+++.+ ..+.||++
T Consensus 90 aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et 169 (749)
T KOG0705|consen 90 AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYET 169 (749)
T ss_pred hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeec
Confidence 5677899999999999999999998877766665444 78899999876442 2355555555555544 45799999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhhh
Q psy2518 167 SVKEDINVNSIFRYLTTKCLSELRQ 191 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~~~~~~~ 191 (208)
+|.+|.++..+|+.+..++....+.
T Consensus 170 ~atyGlnv~rvf~~~~~k~i~~~~~ 194 (749)
T KOG0705|consen 170 CATYGLNVERVFQEVAQKIVQLRKY 194 (749)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999987766544
No 249
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.7e-09 Score=93.58 Aligned_cols=154 Identities=15% Similarity=0.164 Sum_probs=110.9
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc------chhHhhh--
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD------AITKAYY-- 95 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~~~-- 95 (208)
+..++.++|.-++|| +|+++.+....--..|.+.++...-.+...+.. +++.|.||--... ...+.|+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 356799999999999 467766655555566767677777666666666 8999999943221 2333444
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518 96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 175 (208)
..+|+++-|.|.+|.+-- +. .--++.+. +.|++++-|+.|..+++.+. -+.+++.+.+|++++++||++|.|++
T Consensus 80 ~~~D~ivnVvDAtnLeRn--Ly-ltlQLlE~--g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 80 GKPDLIVNVVDATNLERN--LY-LTLQLLEL--GIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCCEEEEEcccchHHHH--HH-HHHHHHHc--CCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 357999999999986432 21 11222222 78999999999987655554 34566889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCLS 187 (208)
Q Consensus 176 ~~f~~i~~~~~~ 187 (208)
++...+.+....
T Consensus 154 ~l~~~i~~~~~~ 165 (653)
T COG0370 154 ELKRAIIELAES 165 (653)
T ss_pred HHHHHHHHhccc
Confidence 999988865443
No 250
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.02 E-value=1.1e-09 Score=92.99 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=74.5
Q ss_pred EEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCC-CEEEEEeC
Q psy2518 67 KECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-------AAHSWKMKVENECGEI-PTVLVQNK 138 (208)
Q Consensus 67 ~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~-piivvgnK 138 (208)
..+......+.+.||||++.|.......++.+|++++|+|.++ .+|+ ...+.+.... .. .. ++|++.||
T Consensus 78 ~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~-~~-gi~~iIV~vNK 154 (447)
T PLN00043 78 WKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAF-TL-GVKQMICCCNK 154 (447)
T ss_pred EEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHH-Hc-CCCcEEEEEEc
Confidence 3445566789999999999999888888999999999999987 3333 2222222111 11 45 57889999
Q ss_pred CCCCCCCCC-------CHHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy2518 139 IDLLDQSVV-------APEEADLLSRALG-----CRLMRTSVKEDINVNS 176 (208)
Q Consensus 139 ~Dl~~~~~v-------~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~ 176 (208)
.|+.+. .. ..++...++++.| ++|+++||++|.|+.+
T Consensus 155 mD~~~~-~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 155 MDATTP-KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ccCCch-hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 997521 11 1345666666666 5699999999999864
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.01 E-value=1.3e-09 Score=96.55 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=65.6
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH--
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP-- 149 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~-- 149 (208)
...++.++||||++.|.......+..+|++++|+|.+....-+....+ ..+ ......|++++.||+|+.+...-..
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~-~~~~~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIA-SLLGIRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHH-HHhCCCeEEEEEEecccccchhHHHHH
Confidence 344678999999998866555668899999999999764322111111 111 1122357889999999853211111
Q ss_pred --HHHHHHHHHhCC---eEEEEecCCCCCHHH
Q psy2518 150 --EEADLLSRALGC---RLMRTSVKEDINVNS 176 (208)
Q Consensus 150 --~~~~~~~~~~~~---~~~e~Sa~~~~~i~~ 176 (208)
++...+.+..++ +++.+||++|.|+.+
T Consensus 180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 122233344454 589999999999885
No 252
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.01 E-value=7.8e-09 Score=84.98 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=85.7
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcC--CCCEEEEEeCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR----------DSFEAAHSWKMKVENECG--EIPTVLVQNKID 140 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~--~~piivvgnK~D 140 (208)
.+.+.+||.+|+...++.|..++.+++++++|.|+++- ..+......+..+.+... +.|+++++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 45689999999999999999999999999999999973 345555555666655432 799999999999
Q ss_pred CCCC---------------CCCCHHHHHHHHHH-----------hCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 141 LLDQ---------------SVVAPEEADLLSRA-----------LGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 141 l~~~---------------~~v~~~~~~~~~~~-----------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
+-.+ -....+.+..+... ..+..+.++|.+-.++..+|+.+...++...
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 7321 01233444444332 1134578899999999999999888877654
No 253
>PLN03126 Elongation factor Tu; Provisional
Probab=99.01 E-value=1.7e-09 Score=92.38 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=88.7
Q ss_pred cceeeeEEEecCceEEE--EEEeeec------Ccc----------ccccccccccceeeEEEEECCeEEEEEEEeCCChh
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDR------DSF----------EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE 85 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~------~~f----------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 85 (208)
-...+++.++|....|| +..+++. +.. .++....+.++. ....++.+...+.++||||++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~--~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINT--ATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEE--EEEEEecCCcEEEEEECCCHH
Confidence 35578999999999999 2233332 111 112222222222 222333344578999999999
Q ss_pred hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCC---CHHHHHHHHHHh--
Q psy2518 86 EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVV---APEEADLLSRAL-- 159 (208)
Q Consensus 86 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v---~~~~~~~~~~~~-- 159 (208)
.|.......+..+|++++|+|.++...-+ ..+++..+... ..| ++++.||+|+.+.... ..++...+.+..
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 98776667778999999999988653322 23333333322 567 7889999998542111 112334444443
Q ss_pred ---CCeEEEEecCCCCCH
Q psy2518 160 ---GCRLMRTSVKEDINV 174 (208)
Q Consensus 160 ---~~~~~e~Sa~~~~~i 174 (208)
+++++.+||.+|.++
T Consensus 233 ~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 233 PGDDIPIISGSALLALEA 250 (478)
T ss_pred CcCcceEEEEEccccccc
Confidence 357999999998543
No 254
>PRK12289 GTPase RsgA; Reviewed
Probab=99.01 E-value=3.1e-09 Score=87.40 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=69.1
Q ss_pred cchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH---HHHhCCeE
Q psy2518 88 DAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL---SRALGCRL 163 (208)
Q Consensus 88 ~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~---~~~~~~~~ 163 (208)
..+.+..++++|.+++|+|+.++. ++..+..|+..... .+.|+++|+||+||.+ .++...+ ...+|+.+
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~-----~~~~~~~~~~~~~~g~~v 152 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVS-----PTEQQQWQDRLQQWGYQP 152 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCC-----hHHHHHHHHHHHhcCCeE
Confidence 345566789999999999999876 55567888776633 3789999999999943 2222333 34568899
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q psy2518 164 MRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 164 ~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
+.+||+++.|++++++.+...+
T Consensus 153 ~~iSA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 153 LFISVETGIGLEALLEQLRNKI 174 (352)
T ss_pred EEEEcCCCCCHHHHhhhhccce
Confidence 9999999999999999887543
No 255
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.00 E-value=1.7e-09 Score=93.50 Aligned_cols=117 Identities=14% Similarity=0.084 Sum_probs=79.1
Q ss_pred cceeeeEEEecCceEEEE--EEeee-cCccc-------------------cccccccccceeeEEEEECCeEEEEEEEeC
Q psy2518 24 FDAITKAYYRGAQACVIT--FSTID-RDSFE-------------------AAHSWKMKVSIKRTIKECEGEEVRLMLWDT 81 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk~--~~~~~-~~~f~-------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt 81 (208)
-.+..++.++|..++||+ ..+++ ..... .......|+.+......++...+++++|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 356889999999999993 12111 01110 011122344555566667777789999999
Q ss_pred CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518 82 AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 82 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~ 143 (208)
||+..|.......++.+|++++|+|.++... .....++..... .+.|+++++||+|+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccccC
Confidence 9999888777778999999999999987422 122344443332 2689999999999843
No 256
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.99 E-value=4.7e-10 Score=100.53 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=81.6
Q ss_pred ccceeeeEEEecCceEEEE--EEeeec---------------Cccccc---cccccccceeeEEEEECCeEEEEEEEeCC
Q psy2518 23 EFDAITKAYYRGAQACVIT--FSTIDR---------------DSFEAA---HSWKMKVSIKRTIKECEGEEVRLMLWDTA 82 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk~--~~~~~~---------------~~f~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 82 (208)
......+|+++|..++||+ ..+++. ..|.+. +..|+........+.+++..+++.+||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 4466899999999999992 233322 122222 34466655555555677888999999999
Q ss_pred ChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 83 GQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 83 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
|+..|.......++.+|++++|+|..+....+....|.. ..+ .+.|++++.||+|..
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK--ENVKPVLFINKVDRL 151 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH--cCCCEEEEEEChhcc
Confidence 999888878889999999999999987433222222222 211 157889999999974
No 257
>CHL00071 tufA elongation factor Tu
Probab=98.98 E-value=3.5e-09 Score=89.18 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=88.4
Q ss_pred ceeeeEEEecCceEEEE--EEeeecC----------------ccccccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518 25 DAITKAYYRGAQACVIT--FSTIDRD----------------SFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE 86 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk~--~~~~~~~----------------~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 86 (208)
...+++.++|...+||+ ..+++.. ...++..+.+..+. ....+..+..++.+.||||+..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChHH
Confidence 45689999999999992 2322221 11122222222222 2233333445678999999988
Q ss_pred hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCCC---HHHHHHHHHHhC--
Q psy2518 87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVVA---PEEADLLSRALG-- 160 (208)
Q Consensus 87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v~---~~~~~~~~~~~~-- 160 (208)
|.......+..+|++++|+|......-+ ....+..+... ..| +|++.||+|+.++.... .++...+.+..+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 8776677788999999999998643222 22233333322 567 77889999985422211 123444444443
Q ss_pred ---CeEEEEecCCCCCH
Q psy2518 161 ---CRLMRTSVKEDINV 174 (208)
Q Consensus 161 ---~~~~e~Sa~~~~~i 174 (208)
++++.+||.+|.|+
T Consensus 165 ~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 165 GDDIPIVSGSALLALEA 181 (409)
T ss_pred CCcceEEEcchhhcccc
Confidence 57999999999754
No 258
>PRK12740 elongation factor G; Reviewed
Probab=98.98 E-value=4.5e-09 Score=93.80 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=56.4
Q ss_pred eEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 64 ~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
...+.+ ..+.+.+|||||+..+.......++.+|++++|+|.++.........|. .+... +.|++++.||+|+.
T Consensus 52 ~~~~~~--~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~~--~~p~iiv~NK~D~~ 125 (668)
T PRK12740 52 ATTCEW--KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEKY--GVPRIIFVNKMDRA 125 (668)
T ss_pred eEEEEE--CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHHc--CCCEEEEEECCCCC
Confidence 334444 3467999999999988777888899999999999999877665544443 22222 68999999999975
No 259
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.98 E-value=2.8e-09 Score=85.71 Aligned_cols=87 Identities=23% Similarity=0.237 Sum_probs=68.1
Q ss_pred hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518 93 AYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED 171 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 171 (208)
..++++|++++|+|++++. ++..+.+|+..+... +.|+++|.||+||.++. ............+.+++.+||+++
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECCCC
Confidence 3478999999999999988 888888898876543 68999999999995431 111223334456789999999999
Q ss_pred CCHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTT 183 (208)
Q Consensus 172 ~~i~~~f~~i~~ 183 (208)
.|+++++..+..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999988764
No 260
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.98 E-value=3.4e-09 Score=87.76 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=73.4
Q ss_pred ChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH----HHH
Q psy2518 83 GQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL----SRA 158 (208)
Q Consensus 83 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~----~~~ 158 (208)
..+.|..+...+++.++++++|+|+.+.. ..|...+.+...+.|+++|+||+|+.. +.+..+...++ +++
T Consensus 49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 49 NDDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred CHHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 45788888888999999999999997654 235555655555789999999999965 33444554443 556
Q ss_pred hCC---eEEEEecCCCCCHHHHHHHHHHH
Q psy2518 159 LGC---RLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 159 ~~~---~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
.++ .++++||++|.|++++|+.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999998653
No 261
>KOG1423|consensus
Probab=98.98 E-value=1e-08 Score=81.01 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=95.9
Q ss_pred cceeeeEEEecCceEEE-E-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc------------c
Q psy2518 24 FDAITKAYYRGAQACVI-T-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD------------A 89 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk-~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------------~ 89 (208)
-.+...|.++|.-++|| + .+...+.+.......+-. ......-.+.....++.++||||.-.-. .
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~T-Tr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHT-TRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccc-eeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 36788999999999999 3 354445544443222211 1122222345567789999999942110 0
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC-------------CCC---HHHHH
Q psy2518 90 ITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS-------------VVA---PEEAD 153 (208)
Q Consensus 90 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~-------------~v~---~~~~~ 153 (208)
.-...+..||++++|+|+++....-+ ...+..+..+. +.|-++|.||.|...++ ++. .+-.+
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 11234678999999999996432211 12222233332 68999999999975431 111 11111
Q ss_pred HHHHH------------hCC-eEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 154 LLSRA------------LGC-RLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 154 ~~~~~------------~~~-~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
++... -++ .+|.+||++|.||+++-+++..++.
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 11111 112 4899999999999999999988764
No 262
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.97 E-value=1.3e-09 Score=86.69 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=52.1
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~ 143 (208)
...++.+|||||+..|...+...++.+|++++|.|..+...-.. ...+..+.+. +.|++++.||+|+..
T Consensus 62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~--~~p~ivviNK~D~~~ 130 (270)
T cd01886 62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY--NVPRIAFVNKMDRTG 130 (270)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 45678999999998888888889999999999999987543222 2223333322 689999999999854
No 263
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.97 E-value=2.1e-10 Score=85.32 Aligned_cols=111 Identities=13% Similarity=0.177 Sum_probs=66.1
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcchhHh---hhcCCcEEE
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDAITKA---YYRGAQACV 102 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~---~~~~~d~ii 102 (208)
-|+++|.+++|| +|.++..+.+.+++.+... ...+.+ +...-.+.+.|+||+.+.+..... +...+.++|
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~----n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN----NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---SSE----EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC----CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 478999999999 5677777765554433311 111122 223345899999999988764333 478999999
Q ss_pred EEEeCCC-hhhHHHHHHHHHHHHh----hcCCCCEEEEEeCCCCCC
Q psy2518 103 ITFSTID-RDSFEAAHSWKMKVEN----ECGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 103 ~v~d~~~-~~s~~~~~~~~~~~~~----~~~~~piivvgnK~Dl~~ 143 (208)
||.|.+. +..+..+.+++-.+.. ....+|++|++||+|+..
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 9999974 4445555443333322 223799999999999854
No 264
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.96 E-value=1.3e-08 Score=76.21 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=105.4
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC----------hhhhc
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG----------QEEFD 88 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g----------~~~~~ 88 (208)
+-.-+...-|+++|-|++|| +++.+.+..-....+.|.|.......+.++++ +.+.|.|| ++.+.
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence 33345667899999999999 45666666656667777776666666677665 78999998 45556
Q ss_pred chhHhhhc---CCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh----
Q psy2518 89 AITKAYYR---GAQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL---- 159 (208)
Q Consensus 89 ~~~~~~~~---~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~---- 159 (208)
.+...|+. +-.+++++.|.-.+-.-.+ +.+|+.+. ..|++++.||+|........ +.....++..
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~ 168 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPP 168 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCC
Confidence 66666664 3567788888876544322 23443332 69999999999975432221 1122233332
Q ss_pred CCe--EEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 160 GCR--LMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 160 ~~~--~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
... ++..|+..+.|++++-..|.+.+.
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhh
Confidence 222 788999999999999998877653
No 265
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.95 E-value=2.9e-09 Score=77.85 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=63.7
Q ss_pred cchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q psy2518 88 DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS 167 (208)
Q Consensus 88 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 167 (208)
+.+.+...+++|++++|+|.+++...... .+...+.. .+.|+++|.||+|+.++.. .+....+....+.+++.+|
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iS 77 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEEE
Confidence 45667788899999999999876543221 22222211 2689999999999843211 1111123334566899999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy2518 168 VKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~~~ 186 (208)
|+++.|++++++.+.+.+.
T Consensus 78 a~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 78 AKERLGTKILRRTIKELAK 96 (156)
T ss_pred ccccccHHHHHHHHHHHHh
Confidence 9999999999999987764
No 266
>PRK00049 elongation factor Tu; Reviewed
Probab=98.94 E-value=9.1e-09 Score=86.34 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=85.5
Q ss_pred ceeeeEEEecCceEEE-E-EEeeecC----------------ccccccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518 25 DAITKAYYRGAQACVI-T-FSTIDRD----------------SFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE 86 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk-~-~~~~~~~----------------~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 86 (208)
...++|.++|....|| + ..++... ...++....+..+. ....+.....++.+.||||+..
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHHH
Confidence 5678999999999999 2 2222221 11112222222222 2333444455678999999988
Q ss_pred hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEE-EEEeCCCCCCCCCCC---HHHHHHHHHHh---
Q psy2518 87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVA---PEEADLLSRAL--- 159 (208)
Q Consensus 87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pii-vvgnK~Dl~~~~~v~---~~~~~~~~~~~--- 159 (208)
|.......+..+|++++|+|.+....-+ ...++..+... ..|.+ ++.||+|+.++.... .++...+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 8776667788999999999998753222 22333333322 57875 579999985321111 12233333333
Q ss_pred --CCeEEEEecCCCC
Q psy2518 160 --GCRLMRTSVKEDI 172 (208)
Q Consensus 160 --~~~~~e~Sa~~~~ 172 (208)
+++++.+||++|.
T Consensus 165 ~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 165 GDDTPIIRGSALKAL 179 (396)
T ss_pred ccCCcEEEeeccccc
Confidence 3578999999975
No 267
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.92 E-value=2.4e-08 Score=75.85 Aligned_cols=153 Identities=16% Similarity=0.118 Sum_probs=87.1
Q ss_pred eeEEEecCceEEE--EEEeeecCc-ccccc---ccccccceeeEEEEECCeEEEEEEEeCCChhhhcc--------h---
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDS-FEAAH---SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA--------I--- 90 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~-f~~~~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~--- 90 (208)
++|+++|.+|+|| +++.+++.. |.... ..|.. .......+++. .+.++||||...... +
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~--~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKT--CQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccc--cceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHH
Confidence 3689999999999 345555543 33222 22332 22233334444 589999999643211 1
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCC------CHHHHHHHHHHhCC
Q psy2518 91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVV------APEEADLLSRALGC 161 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v------~~~~~~~~~~~~~~ 161 (208)
......++|++++|.++.+ .+-.. ...+..+.+..+ -.+++++.|++|......+ .....+.+.+..+-
T Consensus 77 ~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~ 154 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG 154 (196)
T ss_pred HHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC
Confidence 1122467899999999887 22221 222333433332 3678899999985432211 11334445555555
Q ss_pred eEEEEec-----CCCCCHHHHHHHHHHHHH
Q psy2518 162 RLMRTSV-----KEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 162 ~~~e~Sa-----~~~~~i~~~f~~i~~~~~ 186 (208)
.|+..+. ..+.++.++++.+.+.+.
T Consensus 155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 155 RYVAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred eEEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 6655554 456778888887666654
No 268
>PRK12288 GTPase RsgA; Reviewed
Probab=98.91 E-value=1e-08 Score=84.29 Aligned_cols=88 Identities=23% Similarity=0.242 Sum_probs=67.2
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC-CCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV-VAPEEADLLSRALGCRLMRTSVKEDIN 173 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~-v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 173 (208)
..++|.+++|++.+...++..+..|+..... .++|+++|+||+||.+... ...++........+++++++||+++.|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 4679999999999988999999999875542 2689999999999954221 011222233345678999999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTK 184 (208)
Q Consensus 174 i~~~f~~i~~~ 184 (208)
++++++.+...
T Consensus 196 ideL~~~L~~k 206 (347)
T PRK12288 196 LEELEAALTGR 206 (347)
T ss_pred HHHHHHHHhhC
Confidence 99999988654
No 269
>PRK12739 elongation factor G; Reviewed
Probab=98.91 E-value=2.4e-08 Score=89.38 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=74.4
Q ss_pred ceeeeEEEecCceEEEE--EEeeecC-----c-------------cccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518 25 DAITKAYYRGAQACVIT--FSTIDRD-----S-------------FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ 84 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk~--~~~~~~~-----~-------------f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~ 84 (208)
.+.++|.++|..++||+ ..+++.. . -..+....+.++.....+.++ ..++.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence 46889999999999992 2333210 0 001122223333334444444 456899999999
Q ss_pred hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
..|.......++.+|++++|+|..+...-+... .+..+.+. +.|++++.||+|+.
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~~--~~p~iv~iNK~D~~ 138 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADKY--GVPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHHc--CCCEEEEEECCCCC
Confidence 888888888899999999999998764433322 22223222 68999999999985
No 270
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.90 E-value=8.4e-09 Score=92.27 Aligned_cols=140 Identities=14% Similarity=0.170 Sum_probs=86.2
Q ss_pred ceeeeEEEecCceEEEE--EEeeec--Ccc----------------ccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518 25 DAITKAYYRGAQACVIT--FSTIDR--DSF----------------EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ 84 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk~--~~~~~~--~~f----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~ 84 (208)
.+..+|.++|..++||+ +.++.. +.- ..+....+.++.....+.+ ...++.+|||||+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEECCCC
Confidence 45789999999999992 233321 100 0011111222222333333 3467899999999
Q ss_pred hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---
Q psy2518 85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC--- 161 (208)
Q Consensus 85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~--- 161 (208)
..+.......++.+|++++|+|.++....+...-| ..+.+. +.|+++++||+|+.... ..+...++...++.
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~~ 160 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY--EVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANAV 160 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc--CCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCce
Confidence 88887788899999999999999886555443333 233322 68999999999986422 22333344444443
Q ss_pred -eEEEEecCCC
Q psy2518 162 -RLMRTSVKED 171 (208)
Q Consensus 162 -~~~e~Sa~~~ 171 (208)
..+.+||..+
T Consensus 161 ~~~ipis~~~~ 171 (689)
T TIGR00484 161 PIQLPIGAEDN 171 (689)
T ss_pred eEEeccccCCC
Confidence 2456666555
No 271
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.88 E-value=2.9e-08 Score=84.45 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=74.0
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC--HH
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR-DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA--PE 150 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~--~~ 150 (208)
..+.+.||||++.|.......+..+|++++|.|.++. ...+. .+.+. +.....-.|++++.||+|+.+..... .+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ 194 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEIMKLKHIIILQNKIDLVKEAQAQDQYE 194 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHHcCCCcEEEEEecccccCHHHHHHHHH
Confidence 3689999999999877666777899999999999874 12221 12222 22222235689999999985421110 11
Q ss_pred HHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 151 EADLLSRA---LGCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 151 ~~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
+..++.+. .+.+++.+||++|.|++++++.|.+.+.
T Consensus 195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 22222222 2468999999999999999998876543
No 272
>KOG3886|consensus
Probab=98.86 E-value=3.5e-09 Score=80.43 Aligned_cols=141 Identities=20% Similarity=0.273 Sum_probs=86.9
Q ss_pred eeeEEEecCceEEEEEEeeecCccc-----cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-----hhHhhhc
Q psy2518 27 ITKAYYRGAQACVITFSTIDRDSFE-----AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-----ITKAYYR 96 (208)
Q Consensus 27 ~~ki~~vG~s~~gk~~~~~~~~~f~-----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-----~~~~~~~ 96 (208)
.-||++.|.+|+||+.+| .-.|. +...++-.+|+....+.+-| ++.+++||++|++.+.. .....++
T Consensus 4 ~kKvlLMGrsGsGKsSmr--siiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMR--SIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred cceEEEeccCCCCccccc--hhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 458999999999995443 22221 12222222244444444433 45699999999985432 2335688
Q ss_pred CCcEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCEEEEEeCCCCCCC--CCCCHHHH----HHHHHHhCCeEEEEe
Q psy2518 97 GAQACVITFSTIDRDSFEAA---HSWKMKVENECGEIPTVLVQNKIDLLDQ--SVVAPEEA----DLLSRALGCRLMRTS 167 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~---~~~~~~~~~~~~~~piivvgnK~Dl~~~--~~v~~~~~----~~~~~~~~~~~~e~S 167 (208)
+.++.++|||++..+--.++ .+-++.+.++.|...+.+..+|.||... +.+.-++. ..+.+..++.++.+|
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999987543333 4445677788888889999999999432 22211111 222222345677776
Q ss_pred cCC
Q psy2518 168 VKE 170 (208)
Q Consensus 168 a~~ 170 (208)
--+
T Consensus 161 iwD 163 (295)
T KOG3886|consen 161 IWD 163 (295)
T ss_pred hhh
Confidence 654
No 273
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.85 E-value=3.7e-09 Score=82.43 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=103.4
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeE-EEEECCeEEEEEEEeCCChhh-------hcchhHhhh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRT-IKECEGEEVRLMLWDTAGQEE-------FDAITKAYY 95 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~-------~~~~~~~~~ 95 (208)
..++++++|++|+|| +++.++++...+...-.+|.+.... ...++++ .+.+|||||.+. ++.+...++
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 468899999999999 4666665444443333333332222 2233443 489999999654 666777889
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--------CCCCHH-------HHHHHHHHh-
Q psy2518 96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ--------SVVAPE-------EADLLSRAL- 159 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~--------~~v~~~-------~~~~~~~~~- 159 (208)
...|.++.+.+..|+.=--. ..++.++.....+.+++++.|.+|.... .+.+.. .+....+..
T Consensus 116 ~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q 194 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTD-EDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQ 194 (296)
T ss_pred hhccEEEEeccCCCccccCC-HHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998742111 1233344433335899999999997432 122222 122222211
Q ss_pred CC-eEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518 160 GC-RLMRTSVKEDINVNSIFRYLTTKCLSELR 190 (208)
Q Consensus 160 ~~-~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 190 (208)
.. +++..|+..+-|++++...+++.+.....
T Consensus 195 ~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 195 EVKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred hcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 13 78888899999999999999998875433
No 274
>PLN03127 Elongation factor Tu; Provisional
Probab=98.84 E-value=2.7e-08 Score=84.51 Aligned_cols=157 Identities=13% Similarity=0.105 Sum_probs=89.6
Q ss_pred cceeeeEEEecCceEEE-EE-Eeee----------------cCccccccccccccceeeEEEEECCeEEEEEEEeCCChh
Q psy2518 24 FDAITKAYYRGAQACVI-TF-STID----------------RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE 85 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk-~~-~~~~----------------~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 85 (208)
-...++|.++|....|| ++ .++. .+...++..+.+..+. ....+.....++.+.||||+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCcc
Confidence 45578899999999999 22 2221 1111222223333333 333444455678999999998
Q ss_pred hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCCCH---HHHHHHHHHh--
Q psy2518 86 EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVVAP---EEADLLSRAL-- 159 (208)
Q Consensus 86 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v~~---~~~~~~~~~~-- 159 (208)
.|..........+|++++|.|.++...-+ ..+.+..+... +.| +|++.||+|+.++....+ ++..++....
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 87665555567899999999987643222 12222222222 578 578899999854222111 1222233222
Q ss_pred ---CCeEEEEecC---CCCC-------HHHHHHHHHHHH
Q psy2518 160 ---GCRLMRTSVK---EDIN-------VNSIFRYLTTKC 185 (208)
Q Consensus 160 ---~~~~~e~Sa~---~~~~-------i~~~f~~i~~~~ 185 (208)
.++++.+||. +|.| +.++++.+.+.+
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2478888876 4555 556666555443
No 275
>PRK09866 hypothetical protein; Provisional
Probab=98.83 E-value=7.1e-08 Score=83.71 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=74.1
Q ss_pred EEEEEEeCCChhhh-----cchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC
Q psy2518 74 VRLMLWDTAGQEEF-----DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA 148 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~ 148 (208)
.++.+.||||.... .......+..+|++++|.|.++..+..+. .....+.+...+.|+++|.||+|+.++..-.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 46789999997432 22334578999999999999875444332 2233343332236999999999985322223
Q ss_pred HHHHHHHHHHh----C--C-eEEEEecCCCCCHHHHHHHHHHH
Q psy2518 149 PEEADLLSRAL----G--C-RLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 149 ~~~~~~~~~~~----~--~-~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
.+....+.... + . .+|.+||+.|.|++++.+.+...
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 44555543321 2 2 68999999999999999998873
No 276
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.83 E-value=2.3e-08 Score=85.05 Aligned_cols=107 Identities=12% Similarity=0.124 Sum_probs=68.3
Q ss_pred EECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCC-EEEEEeCCC
Q psy2518 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD---SF---EAAHSWKMKVENECGEIP-TVLVQNKID 140 (208)
Q Consensus 68 ~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p-iivvgnK~D 140 (208)
.+......+.|.||||+.+|.......+..+|++++|.|.+... .| ....+.+..+.. . ..| +|++.||.|
T Consensus 79 ~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~-gi~~iiv~vNKmD 156 (446)
T PTZ00141 79 KFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-L-GVKQMIVCINKMD 156 (446)
T ss_pred EEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-c-CCCeEEEEEEccc
Confidence 34455677999999999999887777789999999999998642 11 112222222221 1 455 678999999
Q ss_pred CCC--CCC----CCHHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy2518 141 LLD--QSV----VAPEEADLLSRALG-----CRLMRTSVKEDINVNS 176 (208)
Q Consensus 141 l~~--~~~----v~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~ 176 (208)
... ..+ ...++..++....+ ++++.+||.+|.|+.+
T Consensus 157 ~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 157 DKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 521 100 11223333333333 5789999999999864
No 277
>PRK13768 GTPase; Provisional
Probab=98.83 E-value=3.8e-08 Score=77.73 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=70.8
Q ss_pred EEEEEeCCChhhh---cchhHhhhc---C--CcEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCEEEEEeCCCCCCC
Q psy2518 75 RLMLWDTAGQEEF---DAITKAYYR---G--AQACVITFSTIDRDSFEAA--HSWKMKVENECGEIPTVLVQNKIDLLDQ 144 (208)
Q Consensus 75 ~l~i~Dt~g~~~~---~~~~~~~~~---~--~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~piivvgnK~Dl~~~ 144 (208)
.+.+|||||+.+. +..++.+++ . ++++++++|.......... ..|+........+.|+++|.||+|+.+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5789999998664 333433333 2 8999999999654433322 2333333322337999999999998543
Q ss_pred CCCCHHHHHH----------------------------HHHHhC--CeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 145 SVVAPEEADL----------------------------LSRALG--CRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 145 ~~v~~~~~~~----------------------------~~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
... +.... ..+..+ .+++++||+++.|++++.+.+.+.+
T Consensus 178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 221 11111 112234 4789999999999999999987765
No 278
>KOG3905|consensus
Probab=98.82 E-value=6.3e-08 Score=77.23 Aligned_cols=168 Identities=15% Similarity=0.178 Sum_probs=115.2
Q ss_pred ccCccccceeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEEC--CeEEEEEEEeCCChhhhcchhHhh
Q psy2518 18 TAGQEEFDAITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECE--GEEVRLMLWDTAGQEEFDAITKAY 94 (208)
Q Consensus 18 ~~g~~~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~g~~~~~~~~~~~ 94 (208)
|-++++..+-=.|+++|+.+.|| ++++-+++.- .+.+.-|.+|..-.++-+ +.-.++.+|---|.-....+.+..
T Consensus 43 T~~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~a 120 (473)
T KOG3905|consen 43 TRTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFA 120 (473)
T ss_pred hcccccCCCCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhc
Confidence 34455566777899999999999 4444334433 566666666655544432 334578889887766555555544
Q ss_pred hcCC----cEEEEEEeCCChhh-HHHHHHHHHHHHhhc------------------------------------------
Q psy2518 95 YRGA----QACVITFSTIDRDS-FEAAHSWKMKVENEC------------------------------------------ 127 (208)
Q Consensus 95 ~~~~----d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~------------------------------------------ 127 (208)
+... ..+|++.|++++.. ++.+++|..-+.++.
T Consensus 121 l~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~ 200 (473)
T KOG3905|consen 121 LPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVV 200 (473)
T ss_pred ccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccc
Confidence 4322 47889999999954 456677765542111
Q ss_pred -------------------C-CCCEEEEEeCCCC----CCCCCCC-------HHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 128 -------------------G-EIPTVLVQNKIDL----LDQSVVA-------PEEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 128 -------------------~-~~piivvgnK~Dl----~~~~~v~-------~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
+ .+|++||.+|||. ..+.... ....+.||..+|...|.+|+|+..|++-
T Consensus 201 ~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 201 GSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDL 280 (473)
T ss_pred cCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHH
Confidence 1 4689999999997 2222222 2346678888999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 177 IFRYLTTKCLS 187 (208)
Q Consensus 177 ~f~~i~~~~~~ 187 (208)
++.+|+++.+-
T Consensus 281 lyKYivhr~yG 291 (473)
T KOG3905|consen 281 LYKYIVHRSYG 291 (473)
T ss_pred HHHHHHHHhcC
Confidence 99999988763
No 279
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.81 E-value=3e-08 Score=82.91 Aligned_cols=81 Identities=17% Similarity=0.116 Sum_probs=55.0
Q ss_pred eeEEEecCceEEE--EEEeeecCcccc-cc-----ccccccceeeEEE---------------EECC-eEEEEEEEeCCC
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEA-AH-----SWKMKVSIKRTIK---------------ECEG-EEVRLMLWDTAG 83 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-~~-----~~t~~~~~~~~~~---------------~~~~-~~~~l~i~Dt~g 83 (208)
+||.++|..++|| +|+++....+.. .| .|++|..+....+ ..++ ..+.+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999 467666666542 33 4666643321110 0222 347899999999
Q ss_pred h----hhhcchhHhh---hcCCcEEEEEEeCC
Q psy2518 84 Q----EEFDAITKAY---YRGAQACVITFSTI 108 (208)
Q Consensus 84 ~----~~~~~~~~~~---~~~~d~ii~v~d~~ 108 (208)
. .....+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5 3444566666 88999999999996
No 280
>KOG1191|consensus
Probab=98.77 E-value=1.3e-08 Score=84.92 Aligned_cols=167 Identities=14% Similarity=0.017 Sum_probs=102.1
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccc--cceeeEEEEECCeEEEEEEEeCCChhh-hcc------
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMK--VSIKRTIKECEGEEVRLMLWDTAGQEE-FDA------ 89 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~------ 89 (208)
.+..+.-++|+++|..++|| +++.+..+.-. ...|--| -|.....++++|.+ +.+.||+|..+ -..
T Consensus 262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drs-IVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~g 338 (531)
T KOG1191|consen 262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRS-IVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALG 338 (531)
T ss_pred HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCce-EeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHh
Confidence 55667789999999999999 33433333221 1222222 24555666677766 78999999644 111
Q ss_pred --hhHhhhcCCcEEEEEEeC--CChhhHHHHHHHHHHHHhhcC-------CCCEEEEEeCCCCCCC-CCCCHHHHHHHHH
Q psy2518 90 --ITKAYYRGAQACVITFST--IDRDSFEAAHSWKMKVENECG-------EIPTVLVQNKIDLLDQ-SVVAPEEADLLSR 157 (208)
Q Consensus 90 --~~~~~~~~~d~ii~v~d~--~~~~s~~~~~~~~~~~~~~~~-------~~piivvgnK~Dl~~~-~~v~~~~~~~~~~ 157 (208)
-.+..+..||++++|+|. ++-++-..+...+.....-.. ..|++++.||+|+... ++.+.........
T Consensus 339 I~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~ 418 (531)
T KOG1191|consen 339 IERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA 418 (531)
T ss_pred HHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc
Confidence 122346789999999999 444443333333433322221 4899999999999553 2222211111111
Q ss_pred H-h-CC-eEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518 158 A-L-GC-RLMRTSVKEDINVNSIFRYLTTKCLSELR 190 (208)
Q Consensus 158 ~-~-~~-~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 190 (208)
. . .+ ...++|+++++|++++.+.+.+.+.....
T Consensus 419 ~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 419 EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 1 1 12 34569999999999999999988766543
No 281
>KOG1145|consensus
Probab=98.75 E-value=1.7e-07 Score=79.36 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=94.0
Q ss_pred EEEecCceEEE-EEE-eeecCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 30 AYYRGAQACVI-TFS-TIDRDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 30 i~~vG~s~~gk-~~~-~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
|-++|---=|| +++ .+...+......-.+.-.+.-..+.. +|+ .+.|.||||+.-|..++..-..-+|++++|+.
T Consensus 156 VTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~--~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVA 233 (683)
T KOG1145|consen 156 VTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGK--SITFLDTPGHAAFSAMRARGANVTDIVVLVVA 233 (683)
T ss_pred EEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCC--EEEEecCCcHHHHHHHHhccCccccEEEEEEE
Confidence 56678888888 332 12122222222222211222233334 453 47999999999999999998999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHH-------HHhC--CeEEEEecCCCCCHHH
Q psy2518 107 TIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLS-------RALG--CRLMRTSVKEDINVNS 176 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~-------~~~~--~~~~e~Sa~~~~~i~~ 176 (208)
.+|.---+. .+.++.... +.|+|+..||+|.++ -+.+...+-. +.+| .+++++||++|.|++.
T Consensus 234 adDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~ 306 (683)
T KOG1145|consen 234 ADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDL 306 (683)
T ss_pred ccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHH
Confidence 998532221 223333333 899999999999754 2333333322 2233 3789999999999999
Q ss_pred HHHHHHHHH
Q psy2518 177 IFRYLTTKC 185 (208)
Q Consensus 177 ~f~~i~~~~ 185 (208)
+-+.+.-..
T Consensus 307 L~eaill~A 315 (683)
T KOG1145|consen 307 LEEAILLLA 315 (683)
T ss_pred HHHHHHHHH
Confidence 988876553
No 282
>KOG1489|consensus
Probab=98.69 E-value=1.5e-07 Score=74.84 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=95.0
Q ss_pred eeeeEEEecCceEEE-EEEeeecCcc--cc-----ccccccccceeeEEEEECCeEEEEEEEeCCChhhhc----chhHh
Q psy2518 26 AITKAYYRGAQACVI-TFSTIDRDSF--EA-----AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD----AITKA 93 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk-~~~~~~~~~f--~~-----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----~~~~~ 93 (208)
.+--+=+||--+.|| +++.-+...- .. +-.|++| ++.+++ -.++.+=|.||.-+-. .+...
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG------~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~ 267 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG------TVNYDD-FSQITVADIPGIIEGAHMNKGLGYK 267 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc------eeeccc-cceeEeccCccccccccccCcccHH
Confidence 344456788888999 3332111111 11 2233333 222222 2238899999864322 23334
Q ss_pred h---hcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eE
Q psy2518 94 Y---YRGAQACVITFSTIDR---DSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RL 163 (208)
Q Consensus 94 ~---~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~ 163 (208)
| +..++..++|.|++.+ ..++.+.....++..+.. +.|.++|+||.|+.+. ......++++...- .+
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V 344 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHV 344 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcE
Confidence 4 4579999999999998 777777666666665554 8999999999998431 12223556666655 49
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q psy2518 164 MRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 164 ~e~Sa~~~~~i~~~f~~i~~ 183 (208)
+++||++++++.++.+.+-+
T Consensus 345 ~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 345 VPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred EEeeeccccchHHHHHHHhh
Confidence 99999999999999887654
No 283
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.67 E-value=8.9e-08 Score=66.39 Aligned_cols=103 Identities=12% Similarity=0.102 Sum_probs=61.5
Q ss_pred eEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhh----------hcchhHhhh
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----------FDAITKAYY 95 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----------~~~~~~~~~ 95 (208)
+|+++|.+++|| +++.+.+..... ...+....+.....+.+++..+ .++||||... +... ...+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~-~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKF-LEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHH-HHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHH-HHHH
Confidence 689999999999 345555432211 1111111122334555667664 6999999532 1122 2334
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy2518 96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNK 138 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK 138 (208)
..+|++++|+|.+++.. +.....+..+. ...|+++|.||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 89999999999887422 12223333332 37899999998
No 284
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.65 E-value=3.2e-07 Score=73.38 Aligned_cols=154 Identities=17% Similarity=0.150 Sum_probs=97.7
Q ss_pred eeeeEEEecCceEEE-EEEeeecCcccc--ccccccccceeeEEEEE---CCeEEEEEEEeCCCh-hhh----cch----
Q psy2518 26 AITKAYYRGAQACVI-TFSTIDRDSFEA--AHSWKMKVSIKRTIKEC---EGEEVRLMLWDTAGQ-EEF----DAI---- 90 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~~--~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~g~-~~~----~~~---- 90 (208)
.+.-+++.|--+||| +|.+-+...-++ .|+=| .|.+.+ +.....+|+.||||. ++. +..
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFT------TK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFT------TKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcc------ccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHH
Confidence 355689999999999 454444443333 34322 233322 334457899999995 221 111
Q ss_pred hHhhhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEe
Q psy2518 91 TKAYYRGAQACVITFSTIDRD--SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTS 167 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S 167 (208)
....-.-+++++|+||.+..- +.+.-..++.++..... .|+++|.||.|+.+... .+++......-+. ....++
T Consensus 241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~ 317 (346)
T COG1084 241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKIS 317 (346)
T ss_pred HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhH--HHHHHHHHHhhcccccccee
Confidence 111123478999999998643 45555666777776665 89999999999854322 2333333444444 578899
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q psy2518 168 VKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~~~~~ 188 (208)
+..+.+++.+-..+....++.
T Consensus 318 ~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 318 ATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred eeehhhHHHHHHHHHHHhhch
Confidence 999999998888777765543
No 285
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.61 E-value=5.2e-07 Score=76.83 Aligned_cols=164 Identities=16% Similarity=0.220 Sum_probs=110.4
Q ss_pred ccceeeeEEEecCceEEE-E-EEeeecCccccccccccccceeeEEEEEC--CeEEEEEEEeCCChhhhcchhHhhhc--
Q psy2518 23 EFDAITKAYYRGAQACVI-T-FSTIDRDSFEAAHSWKMKVSIKRTIKECE--GEEVRLMLWDTAGQEEFDAITKAYYR-- 96 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk-~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~g~~~~~~~~~~~~~-- 96 (208)
+....-.|+++|+.++|| + +.++ .+ .+.+.++.|.+|..-.+.-+ ....++.+|--.|...+..+.+..+.
T Consensus 21 ~~~~~k~vlvlG~~~~GKttli~~L-~~--~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~ 97 (472)
T PF05783_consen 21 KLPSEKSVLVLGDKGSGKTTLIARL-QG--IEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE 97 (472)
T ss_pred cCCCCceEEEEeCCCCchHHHHHHh-hc--cCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence 334456799999999999 3 3443 22 24567888888766554433 23457899998886666666655443
Q ss_pred --CCcEEEEEEeCCChhhH-HHHHHHHHHHHhhc----------------------------------------------
Q psy2518 97 --GAQACVITFSTIDRDSF-EAAHSWKMKVENEC---------------------------------------------- 127 (208)
Q Consensus 97 --~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~---------------------------------------------- 127 (208)
.--++++|.|++.|..+ +.+.+|+..+.++.
T Consensus 98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~ 177 (472)
T PF05783_consen 98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS 177 (472)
T ss_pred cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence 23578999999999765 34455543331000
Q ss_pred -------C----------CCCEEEEEeCCCCC----CCCCCC-------HHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 128 -------G----------EIPTVLVQNKIDLL----DQSVVA-------PEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 128 -------~----------~~piivvgnK~Dl~----~~~~v~-------~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
+ .+|++||++|+|.- .+..-. ..-.+.+|..+|+..|.||++...|++-++.
T Consensus 178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK 257 (472)
T ss_pred ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence 0 36999999999962 211111 2235667888899999999999999999999
Q ss_pred HHHHHHHHHh
Q psy2518 180 YLTTKCLSEL 189 (208)
Q Consensus 180 ~i~~~~~~~~ 189 (208)
+|.+.+....
T Consensus 258 yi~h~l~~~~ 267 (472)
T PF05783_consen 258 YILHRLYGFP 267 (472)
T ss_pred HHHHHhccCC
Confidence 9888876543
No 286
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.58 E-value=8.3e-07 Score=70.94 Aligned_cols=150 Identities=19% Similarity=0.140 Sum_probs=95.6
Q ss_pred eeeeEEEecCceEEE-EEEeeecCcccc--ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-------hhHhhh
Q psy2518 26 AITKAYYRGAQACVI-TFSTIDRDSFEA--AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-------ITKAYY 95 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-------~~~~~~ 95 (208)
....+.++|..++|| +++.-+.+...+ .|+=|. .....-.+.++| .++|+.|+||.-.-.+ ..-...
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTT-l~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTT-LEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCcee-cccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 346799999999999 444444444433 333221 122334445544 4589999998533222 223457
Q ss_pred cCCcEEEEEEeCCChhh-HHHHHHHHHHH---------------------------------------------------
Q psy2518 96 RGAQACVITFSTIDRDS-FEAAHSWKMKV--------------------------------------------------- 123 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s-~~~~~~~~~~~--------------------------------------------------- 123 (208)
++||++++|.|+....+ .+.+.+-+...
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 89999999999986554 32222211111
Q ss_pred ---------------HhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 124 ---------------ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 124 ---------------~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
....--.|.+.|.||.|+.. .++...+.+.. .++.+||+.+.|++++.+.+.+.+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 11111368899999999833 55666666554 789999999999999999888765
No 287
>PRK00007 elongation factor G; Reviewed
Probab=98.56 E-value=6.5e-07 Score=80.28 Aligned_cols=140 Identities=14% Similarity=0.190 Sum_probs=84.6
Q ss_pred ceeeeEEEecCceEEEE--EEeeec--Cc----------------cccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518 25 DAITKAYYRGAQACVIT--FSTIDR--DS----------------FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ 84 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk~--~~~~~~--~~----------------f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~ 84 (208)
.+..+|.++|..++||+ ..+++. +. ...+....+.++.....+.+. ..++.+.||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCc
Confidence 46889999999999992 333321 11 001112222223333334443 457899999999
Q ss_pred hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---
Q psy2518 85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC--- 161 (208)
Q Consensus 85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~--- 161 (208)
..|.......++.+|++++|+|....-..+...-|. .+.+. +.|.+++.||+|+.... ..+...++...++.
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~--~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~~ 160 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY--KVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANPV 160 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc--CCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCee
Confidence 888776777889999999999988664444333332 23222 68899999999986422 22333334444443
Q ss_pred -eEEEEecCCC
Q psy2518 162 -RLMRTSVKED 171 (208)
Q Consensus 162 -~~~e~Sa~~~ 171 (208)
..+.+||..+
T Consensus 161 ~~~ipisa~~~ 171 (693)
T PRK00007 161 PIQLPIGAEDD 171 (693)
T ss_pred eEEecCccCCc
Confidence 2355666555
No 288
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.55 E-value=5.5e-07 Score=72.41 Aligned_cols=155 Identities=16% Similarity=0.107 Sum_probs=95.0
Q ss_pred eeEEEecCceEEE-EEEeeecCcc--ccccc-----cccccceeeEEEEECCeEEEEEEEeCCChhhh----cchhHhh-
Q psy2518 28 TKAYYRGAQACVI-TFSTIDRDSF--EAAHS-----WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF----DAITKAY- 94 (208)
Q Consensus 28 ~ki~~vG~s~~gk-~~~~~~~~~f--~~~~~-----~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----~~~~~~~- 94 (208)
--|=+||--++|| ++...+...- ...|+ |.+| .+.+ ...-.+.+=|.||.-+- ..+...|
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLG------vV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FL 232 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLG------VVRV-DGGESFVVADIPGLIEGASEGVGLGLRFL 232 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCccc------EEEe-cCCCcEEEecCcccccccccCCCccHHHH
Confidence 3455789999999 4432222211 12232 2222 1122 12223778899986332 2244444
Q ss_pred --hcCCcEEEEEEeCCChhh---HHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE-E
Q psy2518 95 --YRGAQACVITFSTIDRDS---FEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM-R 165 (208)
Q Consensus 95 --~~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~-e 165 (208)
+.++.+++.|.|++..+. .++......++.++.+ +.|.+||.||+|+....+-.++....+.+..+...+ .
T Consensus 233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ 312 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL 312 (369)
T ss_pred HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee
Confidence 457899999999986553 5666666677777765 899999999999644322223333334444444222 2
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 166 TSVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 166 ~Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
+||.++.|++++...+.+.+.+..
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 313 ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHHhh
Confidence 999999999999999888876654
No 289
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.54 E-value=3.7e-07 Score=66.82 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=56.8
Q ss_pred hhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh----CCeEEEE
Q psy2518 93 AYYRGAQACVITFSTIDRDS--FEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL----GCRLMRT 166 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~----~~~~~e~ 166 (208)
..++++|++++|.|..++.. ...+.+++. ....+.|+++|.||+|+.+ .++...+...+ ....+.+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~~~~~p~ilVlNKiDl~~-----~~~~~~~~~~~~~~~~~~~~~i 75 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KEKPHKHLIFVLNKCDLVP-----TWVTARWVKILSKEYPTIAFHA 75 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHH---hccCCCCEEEEEEchhcCC-----HHHHHHHHHHHhcCCcEEEEEe
Confidence 35678999999999998743 222333332 2222589999999999843 22223333322 2235789
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy2518 167 SVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~ 185 (208)
||+.+.|++++.+.+.+.+
T Consensus 76 Sa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eccccccHHHHHHHHHHHH
Confidence 9999999999999886643
No 290
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.54 E-value=3.6e-07 Score=73.48 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=64.5
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccc--cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch-------hHh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFE--AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-------TKA 93 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-------~~~ 93 (208)
...++|+++|++|+|| +++++++.... ....+ .+..........+| ..+.+|||||....... .+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s-~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS-EGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-cceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 5678999999999999 45555544321 11111 11111111222343 56899999997543221 111
Q ss_pred hh--cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcC---CCCEEEEEeCCCCCC
Q psy2518 94 YY--RGAQACVITFSTIDRDSFEAA-HSWKMKVENECG---EIPTVLVQNKIDLLD 143 (208)
Q Consensus 94 ~~--~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~piivvgnK~Dl~~ 143 (208)
++ ...|++|+|.+++... +... ...+..+....+ -.+.|++.|++|...
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 22 2699999997665321 2211 233444444433 357899999999653
No 291
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.51 E-value=4.2e-07 Score=65.36 Aligned_cols=78 Identities=14% Similarity=0.055 Sum_probs=53.8
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q psy2518 91 TKAYYRGAQACVITFSTIDRDSFE--AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 168 (208)
....+..+|++++|+|..++.+.. .+.+|+... ..+.|+++|.||+|+.++.. .....+.....+.+++.+||
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 345678999999999999876644 345555433 13689999999999843221 12333445556678999999
Q ss_pred CCCCC
Q psy2518 169 KEDIN 173 (208)
Q Consensus 169 ~~~~~ 173 (208)
+++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98753
No 292
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.50 E-value=5.1e-07 Score=67.05 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=62.7
Q ss_pred hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE
Q psy2518 85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM 164 (208)
Q Consensus 85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (208)
.+........++.||++++|+|.+++...... .+.. ...+.|+++|.||+|+.++.. .....++.+..+..++
T Consensus 7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi 79 (171)
T cd01856 7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----ILGNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVL 79 (171)
T ss_pred HHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----HhcCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEE
Confidence 34444556778999999999999876543221 1222 222579999999999843211 0111122223345789
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q psy2518 165 RTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 165 e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
.+||+++.|++++...+.+.+.
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999999888754
No 293
>PRK13796 GTPase YqeH; Provisional
Probab=98.47 E-value=1.5e-06 Score=72.20 Aligned_cols=93 Identities=19% Similarity=0.302 Sum_probs=63.8
Q ss_pred hhhcchhHhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH----HHHh
Q psy2518 85 EEFDAITKAYYRGAQ-ACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL----SRAL 159 (208)
Q Consensus 85 ~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~----~~~~ 159 (208)
+.|..... .+..++ .+++|+|+.+.. ..|...+.+...+.|+++|+||+||.. +....+....+ ++..
T Consensus 57 ~~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence 34544333 334445 999999987743 235555555555789999999999954 33444444444 4555
Q ss_pred CC---eEEEEecCCCCCHHHHHHHHHHH
Q psy2518 160 GC---RLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 160 ~~---~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
++ .++.+||+++.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999998654
No 294
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.45 E-value=1.5e-06 Score=66.13 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=55.0
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH--hCCeEEEEecCCCCCHH
Q psy2518 98 AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA--LGCRLMRTSVKEDINVN 175 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~ 175 (208)
+|.++.|+|+.+.++... .+..++ ...-+++.||+|+.+......+...+.++. .+.+++++||++|.|++
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~qi-----~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~ 185 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPGI-----TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLD 185 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhHh-----hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHH
Confidence 688999999987665321 111111 223388999999964222233444444444 34699999999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCL 186 (208)
Q Consensus 176 ~~f~~i~~~~~ 186 (208)
++|+++.+.++
T Consensus 186 el~~~i~~~~~ 196 (199)
T TIGR00101 186 TVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHhhcC
Confidence 99999987653
No 295
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.44 E-value=1.7e-06 Score=63.14 Aligned_cols=81 Identities=15% Similarity=0.036 Sum_probs=55.1
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH----HHHHhCCeEEEEecCCCCCH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL----LSRALGCRLMRTSVKEDINV 174 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~----~~~~~~~~~~e~Sa~~~~~i 174 (208)
|++++|+|..++.+... .|+........+.|+++|.||+|+.. .++... +....+..++.+||+++.|+
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~~p~IiVlNK~Dl~~-----~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKEKGKKLILVLNKADLVP-----KEVLRKWLAYLRHSYPTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhcCCCCEEEEEechhcCC-----HHHHHHHHHHHHhhCCceEEEEeccCCcCh
Confidence 68999999988765542 23331111122689999999999843 222222 22233457899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKCL 186 (208)
Q Consensus 175 ~~~f~~i~~~~~ 186 (208)
+++.+.+.+...
T Consensus 74 ~~L~~~i~~~~~ 85 (155)
T cd01849 74 EKKESAFTKQTN 85 (155)
T ss_pred hhHHHHHHHHhH
Confidence 999999877644
No 296
>KOG0094|consensus
Probab=98.44 E-value=9.1e-08 Score=70.90 Aligned_cols=56 Identities=41% Similarity=0.736 Sum_probs=49.8
Q ss_pred cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccccc
Q psy2518 4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 59 (208)
Q Consensus 4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~ 59 (208)
+-++|+.++|++|||||||+|+.++.-++.+.+.....+.....++|.....|--.
T Consensus 64 ~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~d 119 (221)
T KOG0094|consen 64 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIED 119 (221)
T ss_pred EEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHH
Confidence 56899999999999999999999999999999998888888778889887777654
No 297
>KOG1490|consensus
Probab=98.42 E-value=2.4e-06 Score=71.91 Aligned_cols=163 Identities=15% Similarity=0.102 Sum_probs=104.2
Q ss_pred eeeEEEecCceEEE-EEEeeecCccccc--cccccccceeeEEE---EECCeEEEEEEEeCCChhhh----cch-----h
Q psy2518 27 ITKAYYRGAQACVI-TFSTIDRDSFEAA--HSWKMKVSIKRTIK---ECEGEEVRLMLWDTAGQEEF----DAI-----T 91 (208)
Q Consensus 27 ~~ki~~vG~s~~gk-~~~~~~~~~f~~~--~~~t~~~~~~~~~~---~~~~~~~~l~i~Dt~g~~~~----~~~-----~ 91 (208)
+.-.+++|-.++|| +|.+.....-.+. |.-| .+.+ +++..-...++.||||.... +.. .
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFT------TksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFT------TKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccc------cchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHH
Confidence 44578899999999 5544333332222 2211 1222 23445567889999995211 010 1
Q ss_pred HhhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH---HHHHhCCeEEEE
Q psy2518 92 KAYYRGAQACVITFSTIDR--DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL---LSRALGCRLMRT 166 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~---~~~~~~~~~~e~ 166 (208)
.....--.+++++.|++.. -|...--+++..++-...+.|.|+|.||+|+-....++++.... +...-+++++++
T Consensus 242 TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 242 TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 1112234567889998763 45555556667776666699999999999986655566554332 333334789999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhhhhhhh
Q psy2518 167 SVKEDINVNSIFRYLTTKCLSELRQQEEE 195 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~ 195 (208)
|+.+.+||.++-....+.++..+-++..+
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa~RVE~Klk 350 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLAARVEQKLK 350 (620)
T ss_pred cccchhceeeHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988776444433
No 298
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.41 E-value=9.8e-07 Score=79.60 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=73.5
Q ss_pred cceeeeEEEecCceEEEE--EEeeec--Cc--------------cccc--cccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518 24 FDAITKAYYRGAQACVIT--FSTIDR--DS--------------FEAA--HSWKMKVSIKRTIKECEGEEVRLMLWDTAG 83 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk~--~~~~~~--~~--------------f~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g 83 (208)
..+...|.++|..+.||+ ..+++. +. -..+ ..-|+........+.+++..+.+.+.||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 456889999999999992 111111 00 0011 112222111122223466678899999999
Q ss_pred hhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 84 QEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 84 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
+..|.......++.+|++++|+|......-+...-|... .+. +.|.+++.||.|+.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~~--~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LRE--RVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HHc--CCCeEEEEECchhh
Confidence 998888788889999999999998875443333333322 222 46789999999974
No 299
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.39 E-value=1e-06 Score=69.40 Aligned_cols=119 Identities=16% Similarity=0.138 Sum_probs=69.0
Q ss_pred cCccccceeeeEEEecCceEEE--EEEeeecCccccc--c-ccccccceeeEEEEECCeEEEEEEEeCCChhhhcc----
Q psy2518 19 AGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAA--H-SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA---- 89 (208)
Q Consensus 19 ~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~--~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---- 89 (208)
++++.....++|+++|++|+|| +++.+.+...... + ..|.. ........++ ..+.+|||||......
T Consensus 23 ~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~--~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~ 98 (249)
T cd01853 23 KGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLR--VREVSGTVDG--FKLNIIDTPGLLESVMDQRV 98 (249)
T ss_pred HhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEE--EEEEEEEECC--eEEEEEECCCcCcchhhHHH
Confidence 4567778889999999999999 3455444433221 1 22222 1122223344 4689999999654310
Q ss_pred ------hhHhhhc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCC
Q psy2518 90 ------ITKAYYR--GAQACVITFSTIDR-DSFEAAHSWKMKVENECG---EIPTVLVQNKIDLL 142 (208)
Q Consensus 90 ------~~~~~~~--~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~ 142 (208)
....+++ ..|++++|..++.. ..+.+ ...+..+.+..+ -.++++|.||+|..
T Consensus 99 ~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 99 NRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 1122332 67888888777643 22221 233333433333 35799999999974
No 300
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.38 E-value=3.8e-06 Score=70.19 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=87.7
Q ss_pred ccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy2518 59 KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNK 138 (208)
Q Consensus 59 ~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK 138 (208)
|+.+..|...++.+.++++|.||||+-.|.......++=.|++++++|..+..=-+. +..+.+.... ..+.|+|.||
T Consensus 53 GITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQT-rFVlkKAl~~--gL~PIVVvNK 129 (603)
T COG1217 53 GITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQT-RFVLKKALAL--GLKPIVVINK 129 (603)
T ss_pred CcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCch-hhhHHHHHHc--CCCcEEEEeC
Confidence 445566666666666889999999999999999999999999999999987421111 1111121111 6777889999
Q ss_pred CCCCCCCC--CCHHHHHHHH------HHhCCeEEEEecCCC----------CCHHHHHHHHHHHHHHHh
Q psy2518 139 IDLLDQSV--VAPEEADLLS------RALGCRLMRTSVKED----------INVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 139 ~Dl~~~~~--v~~~~~~~~~------~~~~~~~~e~Sa~~~----------~~i~~~f~~i~~~~~~~~ 189 (208)
.|.+..|. |-.+-...|. .+++++++..||+.| .+..-+|+.|++.+....
T Consensus 130 iDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 130 IDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 99866442 1112122222 234678999999987 367888999888876543
No 301
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.37 E-value=2.6e-06 Score=68.81 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=80.2
Q ss_pred cCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHH--HHHHHHH
Q psy2518 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH--SWKMKVE 124 (208)
Q Consensus 47 ~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~--~~~~~~~ 124 (208)
-+.+..+....+.+|+-.+.+.. .+-++.|-||||++.|.+..-.-.+.||++|++.|.-..- .+..+ .++..+.
T Consensus 61 vDGL~AEREQGITIDVAYRyFsT--~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLL 137 (431)
T COG2895 61 VDGLEAEREQGITIDVAYRYFST--EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLL 137 (431)
T ss_pred hhhhHHHHhcCceEEEEeeeccc--ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHh
Confidence 45555555555555655554444 4445899999999999876666678899999999984321 11111 1222222
Q ss_pred hhcCCCCEEEEEeCCCCCCCCCCC----HHHHHHHHHHhCC---eEEEEecCCCCCHH
Q psy2518 125 NECGEIPTVLVQNKIDLLDQSVVA----PEEADLLSRALGC---RLMRTSVKEDINVN 175 (208)
Q Consensus 125 ~~~~~~piivvgnK~Dl~~~~~v~----~~~~~~~~~~~~~---~~~e~Sa~~~~~i~ 175 (208)
+=..+++..||.||.+-.+-. .++-..++.+++. .++.+||..|.||-
T Consensus 138 ---GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 138 ---GIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred ---CCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 235678888999996532211 2334457777775 68999999999875
No 302
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.36 E-value=3e-06 Score=67.80 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=62.1
Q ss_pred chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH---HHHhCCeEEE
Q psy2518 89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL---SRALGCRLMR 165 (208)
Q Consensus 89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~---~~~~~~~~~e 165 (208)
......++.+|++++|.|..++.+..+ .++.... .+.|+++|.||+|+.+ .++...+ .+..+.+++.
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL~~-----~~~~~~~~~~~~~~~~~vi~ 82 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADLAD-----PAVTKQWLKYFEEKGIKALA 82 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEccccCC-----HHHHHHHHHHHHHcCCeEEE
Confidence 345667899999999999987655332 1222222 2589999999999843 2222222 2234567899
Q ss_pred EecCCCCCHHHHHHHHHHHHHH
Q psy2518 166 TSVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 166 ~Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
+||+++.|++++.+.+.+.+..
T Consensus 83 iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 83 INAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EECCCcccHHHHHHHHHHHHHH
Confidence 9999999999999988777654
No 303
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=4.1e-06 Score=69.01 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=73.2
Q ss_pred eeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhh---HHH---HHHHHHHHHhhcCCCCEEEEE
Q psy2518 63 KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS---FEA---AHSWKMKVENECGEIPTVLVQ 136 (208)
Q Consensus 63 ~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~~---~~~~~~~~~~~~~~~piivvg 136 (208)
......+....+.+.|.|+||+..|-.-.-.-.+.||++++|.|..+.+. |.. .++ ...+.+..+-..+|++.
T Consensus 74 ~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlGi~~lIVav 152 (428)
T COG5256 74 DVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLGIKQLIVAV 152 (428)
T ss_pred EEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcCCceEEEEE
Confidence 34444555666789999999998877655556788999999999987631 111 111 11122223345678889
Q ss_pred eCCCCCCCCCCCHHH----HHHHHHHhC-----CeEEEEecCCCCCHHHH
Q psy2518 137 NKIDLLDQSVVAPEE----ADLLSRALG-----CRLMRTSVKEDINVNSI 177 (208)
Q Consensus 137 nK~Dl~~~~~v~~~~----~~~~~~~~~-----~~~~e~Sa~~~~~i~~~ 177 (208)
||.|+.+.++-.-++ ...+.+..| ++|+.+||..|.|+.+.
T Consensus 153 NKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 153 NKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 999986543322222 222444444 46999999999998654
No 304
>KOG1144|consensus
Probab=98.33 E-value=4.1e-06 Score=73.37 Aligned_cols=111 Identities=17% Similarity=0.254 Sum_probs=77.3
Q ss_pred EEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC-CCCC-----
Q psy2518 76 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL-DQSV----- 146 (208)
Q Consensus 76 l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~-~~~~----- 146 (208)
+.++||||++.|..++.....-+|.+|+|.|+-+ +++.+.+.. +... +.|+||..||.|.. ..+.
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l----LR~r--ktpFivALNKiDRLYgwk~~p~~~ 615 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL----LRMR--KTPFIVALNKIDRLYGWKSCPNAP 615 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHH----HHhc--CCCeEEeehhhhhhcccccCCCch
Confidence 7889999999999999999999999999999965 344444322 2111 79999999999952 1100
Q ss_pred -----------CCH-------HHHHHHHHH-h-----------C--CeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Q psy2518 147 -----------VAP-------EEADLLSRA-L-----------G--CRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ 192 (208)
Q Consensus 147 -----------v~~-------~~~~~~~~~-~-----------~--~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~ 192 (208)
+-. ..+.+|+.+ + + +.++.+||.+|.||-+|+..|++.....+.++
T Consensus 616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 000 011112211 0 1 24679999999999999999999877766543
No 305
>PTZ00416 elongation factor 2; Provisional
Probab=98.33 E-value=8.7e-07 Score=80.89 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=52.2
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
...+.+.||||+..|.......++.+|++++|+|..+.-..+...-| ..+.+. +.|++++.||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc--CCCEEEEEEChhhh
Confidence 67899999999998888788889999999999999886444333333 333332 58999999999984
No 306
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.33 E-value=9.7e-07 Score=80.70 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=53.4
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
..+.+++.||||+..|.......++.+|++++|+|....-......-|...... +.|++++.||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC---CCCEEEEEECCccc
Confidence 467889999999999988788888999999999999876544433334332222 68999999999975
No 307
>KOG4273|consensus
Probab=98.28 E-value=2.4e-06 Score=66.08 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=89.5
Q ss_pred EEEecCceE--EE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 30 AYYRGAQAC--VI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 30 i~~vG~s~~--gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
++++|-+|+ |+ ++.++....|..+....-.++++-.++....-.-.+.++-..-.+.+.-..........+++.||
T Consensus 7 ~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmvf 86 (418)
T KOG4273|consen 7 ALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMVF 86 (418)
T ss_pred EEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEEE
Confidence 567899998 88 34555566666544433333443333322111112222222222222222223344568899999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC---------------------------C-------------
Q psy2518 106 STIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ---------------------------S------------- 145 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~---------------------------~------------- 145 (208)
|++....+..+..|+....-..-+ -.+++|||.|.... .
T Consensus 87 dlse~s~l~alqdwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssllgs 165 (418)
T KOG4273|consen 87 DLSEKSGLDALQDWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSLLGS 165 (418)
T ss_pred eccchhhhHHHHhhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccccccc
Confidence 999999999999998754322112 24667999995211 0
Q ss_pred ----CCCHHHHHHHHHHhCCeEEEEecCCC------------CCHHHHHHHHHHH
Q psy2518 146 ----VVAPEEADLLSRALGCRLMRTSVKED------------INVNSIFRYLTTK 184 (208)
Q Consensus 146 ----~v~~~~~~~~~~~~~~~~~e~Sa~~~------------~~i~~~f~~i~~~ 184 (208)
......+.+|+.++|+.++|.||.+. .||+.+|..+--.
T Consensus 166 edasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ah 220 (418)
T KOG4273|consen 166 EDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH 220 (418)
T ss_pred ccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence 01223467788999999999999542 4777777765443
No 308
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=9.6e-06 Score=67.36 Aligned_cols=146 Identities=12% Similarity=0.144 Sum_probs=89.8
Q ss_pred ecCceEEEEEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh--
Q psy2518 33 RGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR-- 110 (208)
Q Consensus 33 vG~s~~gk~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~-- 110 (208)
-|++...|.+.-...+...++-...+.+|...-....+ ...+.+.|++|++++-+..-.-+...|.+++|.+.++.
T Consensus 11 HgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~--d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~ 88 (447)
T COG3276 11 HGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE--DGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLM 88 (447)
T ss_pred ccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC--CCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcc
Confidence 34544444344334555555444433334333333333 33789999999998876566667789999999999653
Q ss_pred -hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 111 -DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA---LGCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 111 -~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
++-+.+ .+.+..+-...++|.||+|..+...+ ++..++.... ...++|.+|+++|.||+++-+.+.....
T Consensus 89 ~qtgEhL-----~iLdllgi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 89 AQTGEHL-----LILDLLGIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred hhhHHHH-----HHHHhcCCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 333332 12233334556999999998653211 1111222222 2358899999999999999999988874
No 309
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.23 E-value=1.1e-05 Score=61.88 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=41.8
Q ss_pred CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG--CRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 129 ~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
..|.+++.||+|+.+......++..+..++.+ .+++++||++|.|++++|+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999996533333344444444443 689999999999999999998774
No 310
>KOG0082|consensus
Probab=98.21 E-value=2.7e-05 Score=63.61 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=83.7
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhH----------HHHHHHHHHHHhhcC--CCCEEEEEeCC
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF----------EAAHSWKMKVENECG--EIPTVLVQNKI 139 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~----------~~~~~~~~~~~~~~~--~~piivvgnK~ 139 (208)
+...+.+.|++||..-+.-|..++.+++++|||.++++-+-. .+....++.+.++.- +.++|+..||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 446789999999988888899999999999999999864321 122334555544433 89999999999
Q ss_pred CCCCC--------------C-CCCHHHHHHHHHHh----------CCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 140 DLLDQ--------------S-VVAPEEADLLSRAL----------GCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 140 Dl~~~--------------~-~v~~~~~~~~~~~~----------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
||-++ . ....+++..+.... .+-+..++|.+-.+|+.+|..+.+.+....
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 98322 1 12344444443321 234567899999999999999988887543
No 311
>PRK01889 GTPase RsgA; Reviewed
Probab=98.21 E-value=6.9e-06 Score=68.06 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=60.2
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCCC
Q psy2518 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSR-ALGCRLMRTSVKEDIN 173 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~ 173 (208)
..++|.+++|++++.+-+...+..++...... +.|.++|.||+||.+. ..+....+.. ..+++++.+||+++.|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~---~~~~~~~~~~~~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCED---AEEKIAEVEALAPGVPVLAVSALDGEG 184 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCC---HHHHHHHHHHhCCCCcEEEEECCCCcc
Confidence 57899999999998665666667766665544 6788999999999542 1112222222 3467899999999999
Q ss_pred HHHHHHHHH
Q psy2518 174 VNSIFRYLT 182 (208)
Q Consensus 174 i~~~f~~i~ 182 (208)
++++...+.
T Consensus 185 l~~L~~~L~ 193 (356)
T PRK01889 185 LDVLAAWLS 193 (356)
T ss_pred HHHHHHHhh
Confidence 999888764
No 312
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.19 E-value=8.5e-06 Score=65.61 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=62.8
Q ss_pred chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH---HHHhCCeEEE
Q psy2518 89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL---SRALGCRLMR 165 (208)
Q Consensus 89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~---~~~~~~~~~e 165 (208)
......++.+|++++|.|..++.+..+ .++..... +.|+++|.||+|+.+. +....+ ....+.+++.
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~---~kp~iiVlNK~DL~~~-----~~~~~~~~~~~~~~~~vi~ 85 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG---NKPRLLILNKSDLADP-----EVTKKWIEYFEEQGIKALA 85 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC---CCCEEEEEEchhcCCH-----HHHHHHHHHHHHcCCeEEE
Confidence 345667889999999999987754332 22223222 5899999999998432 222222 2334567899
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q psy2518 166 TSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 166 ~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
+||+++.|++++.+.+.+.+...
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred EECCCcccHHHHHHHHHHHHHHH
Confidence 99999999999999887776543
No 313
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.19 E-value=8.4e-06 Score=63.32 Aligned_cols=136 Identities=12% Similarity=0.026 Sum_probs=73.3
Q ss_pred eeeeEEEecCceEEE-EEEeeecCccccc-cccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI-TFSTIDRDSFEAA-HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
....|.++|.+++|| ++...+.+.+... .....|. ..+ ..+...++.+.||+|.. .. .....+.+|++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll 109 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL 109 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence 346789999999999 3321122222111 1111121 111 22245567899999864 22 2234688999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCE-EEEEeCCCCCCCCCCCH---HHHHH-HHHH--hCCeEEEEecCCCC
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECGEIPT-VLVQNKIDLLDQSVVAP---EEADL-LSRA--LGCRLMRTSVKEDI 172 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~~~pi-ivvgnK~Dl~~~~~v~~---~~~~~-~~~~--~~~~~~e~Sa~~~~ 172 (208)
++|.+........ .++..+... ..|. ++|.||.|+.+....-. ++.+. +..+ .+.+++.+||++.-
T Consensus 110 viDa~~~~~~~~~-~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 110 LIDASFGFEMETF-EFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEecCcCCCHHHH-HHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 9999865433221 222223222 4564 55999999853211111 11111 2221 13589999999884
No 314
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.15 E-value=3.6e-06 Score=64.75 Aligned_cols=156 Identities=16% Similarity=0.141 Sum_probs=80.9
Q ss_pred eeEEEecCceEEE--EEEeeecCc-cccccc-cccccceeeEEEEECCeEEEEEEEeCCChhhh--------cch---hH
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDS-FEAAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF--------DAI---TK 92 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~-f~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--------~~~---~~ 92 (208)
++|+++|++|+|| +.+.+++.. |..... ..+..........++|.. +.++||||.-.. ..+ ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 4799999999999 234333333 332211 111112333344666755 789999994211 111 11
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCC-------HHHHHHHHHHhCCe
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVA-------PEEADLLSRALGCR 162 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~-------~~~~~~~~~~~~~~ 162 (208)
....+.|++|+|+.++ +-+-.. ...+..+.+..+ -..++||.|..|......+. .+....+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 2345789999999998 333222 122233333333 24578888888754433211 12234455666767
Q ss_pred EEEEecC------CCCCHHHHHHHHHHHHHH
Q psy2518 163 LMRTSVK------EDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 163 ~~e~Sa~------~~~~i~~~f~~i~~~~~~ 187 (208)
|+..+.+ ....+.+++..+-+.+.+
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence 8877776 234567777765555443
No 315
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.14 E-value=2.6e-05 Score=64.96 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=95.9
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecC----ccc-----------------cccccccccce---eeEEEEE-CCeEEE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRD----SFE-----------------AAHSWKMKVSI---KRTIKEC-EGEEVR 75 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~----~f~-----------------~~~~~t~~~~~---~~~~~~~-~~~~~~ 75 (208)
+....+=|-++|+...|| ++++|... .-. .....|...-+ ....+.. ++....
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~ 92 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK 92 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence 445667889999999999 34555554 111 01112332223 2223333 566788
Q ss_pred EEEEeCCChhhhcch-----------------------------hHhhhc-CCcEEEEEE-eCC----ChhhHHHH-HHH
Q psy2518 76 LMLWDTAGQEEFDAI-----------------------------TKAYYR-GAQACVITF-STI----DRDSFEAA-HSW 119 (208)
Q Consensus 76 l~i~Dt~g~~~~~~~-----------------------------~~~~~~-~~d~ii~v~-d~~----~~~s~~~~-~~~ 119 (208)
+.+.||+|-..-..+ .+..+. .+++.++|. |.+ .++.+... .+|
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 999999984321110 223455 899999998 664 12334333 567
Q ss_pred HHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC--CCHHHHHHHHHH
Q psy2518 120 KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED--INVNSIFRYLTT 183 (208)
Q Consensus 120 ~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~--~~i~~~f~~i~~ 183 (208)
+.++++. +.|++++.||.|-.. ..+.+.+.++..+++.+++.+|+..- ..|..+++.++.
T Consensus 173 i~eLk~~--~kPfiivlN~~dp~~--~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 173 IEELKEL--NKPFIILLNSTHPYH--PETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HHHHHhc--CCCEEEEEECcCCCC--chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 7777766 799999999999422 12555566777778888888887654 355555555443
No 316
>KOG0084|consensus
Probab=98.11 E-value=7.2e-07 Score=66.27 Aligned_cols=60 Identities=33% Similarity=0.752 Sum_probs=52.3
Q ss_pred cccccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccccccc
Q psy2518 2 INRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVS 61 (208)
Q Consensus 2 ~~~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~~~ 61 (208)
.+..++|..++|++|||||||+|+..+.-++.|..|+...+......+|+....|--.++
T Consensus 49 rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~ 108 (205)
T KOG0084|consen 49 RTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEID 108 (205)
T ss_pred EEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhh
Confidence 456789999999999999999999999999999999999888888888987766665444
No 317
>PTZ00258 GTP-binding protein; Provisional
Probab=98.10 E-value=2.4e-05 Score=65.21 Aligned_cols=85 Identities=13% Similarity=0.064 Sum_probs=49.6
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCe---------------EEEEEEEeCCCh
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQ 84 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~ 84 (208)
+...-+||.++|..++|| +|+.+....-. .+|+ ....+-..-.+.+.+. ..++++.||||.
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~p-ftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFP-FCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCC-CCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 345677999999999999 35555333322 1222 1111222223333222 345899999996
Q ss_pred hhh----cchhHh---hhcCCcEEEEEEeCC
Q psy2518 85 EEF----DAITKA---YYRGAQACVITFSTI 108 (208)
Q Consensus 85 ~~~----~~~~~~---~~~~~d~ii~v~d~~ 108 (208)
..- ..+... .++.+|++++|+|..
T Consensus 96 v~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 421 122223 467899999999973
No 318
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=2.5e-05 Score=62.63 Aligned_cols=110 Identities=17% Similarity=0.233 Sum_probs=73.3
Q ss_pred EEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC--CCC
Q psy2518 75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR----DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS--VVA 148 (208)
Q Consensus 75 ~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~--~v~ 148 (208)
.+.+.|.||+|-.....-.-..--|++++|...+.+ ++-+++ ..+. ...-..++++.||.||-.+. .-.
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl----~Ale-Iigik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL----MALE-IIGIKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH----HHHh-hhccceEEEEecccceecHHHHHHH
Confidence 578999999998655333333446899999998864 333332 2221 12235689999999994311 112
Q ss_pred HHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 149 PEEADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 149 ~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
.+++++|.+-. +.+++.+||..+.||+.+++.+.+.+....
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 33444444432 469999999999999999999988876543
No 319
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.01 E-value=9.3e-06 Score=63.55 Aligned_cols=111 Identities=20% Similarity=0.225 Sum_probs=57.5
Q ss_pred EEEEEeCCChhhhcchhHhhh--------cCCcEEEEEEeCCChhhHH-HHHHHHHHHHhhcC-CCCEEEEEeCCCCCCC
Q psy2518 75 RLMLWDTAGQEEFDAITKAYY--------RGAQACVITFSTIDRDSFE-AAHSWKMKVENECG-EIPTVLVQNKIDLLDQ 144 (208)
Q Consensus 75 ~l~i~Dt~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~ 144 (208)
.+.|.|||||.++...+.... ...-+++++.|.....+.. .+..++..+.-... +.|.|.|.||+|+.++
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999977655444333 4566888999976433311 12333333222222 7999999999999652
Q ss_pred CC-------------------CCHHHHHHHHHH---hC-C-eEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 145 SV-------------------VAPEEADLLSRA---LG-C-RLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 145 ~~-------------------v~~~~~~~~~~~---~~-~-~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
.. ......++++.- ++ . .++.+|+++++++++++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 001111122222 12 3 799999999999999999776543
No 320
>KOG0086|consensus
Probab=98.00 E-value=1.2e-06 Score=62.61 Aligned_cols=54 Identities=43% Similarity=0.880 Sum_probs=46.4
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~ 58 (208)
|..+.+++|++|||||||+|+++-+-++.|..|....+.....++|++-..|-.
T Consensus 52 nVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~ 105 (214)
T KOG0086|consen 52 NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLT 105 (214)
T ss_pred eecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHH
Confidence 567899999999999999999999999999999988777777788877665544
No 321
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.97 E-value=3.7e-05 Score=67.52 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=73.8
Q ss_pred ccCccccceeeeEEEecCceEEE--EEEeeecCc-ccccc--ccccccceeeEEEEECCeEEEEEEEeCCChhhhc----
Q psy2518 18 TAGQEEFDAITKAYYRGAQACVI--TFSTIDRDS-FEAAH--SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD---- 88 (208)
Q Consensus 18 ~~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~-f~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---- 88 (208)
.+|++..+..+.|+++|++|+|| +++.++... |.... ..|.. ........++ ..+.++||||.....
T Consensus 109 a~g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr--~~ei~~~idG--~~L~VIDTPGL~dt~~dq~ 184 (763)
T TIGR00993 109 AEGQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS--VQEIEGLVQG--VKIRVIDTPGLKSSASDQS 184 (763)
T ss_pred hhhccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE--EEEEEEEECC--ceEEEEECCCCCccccchH
Confidence 45677777888999999999999 455555543 33221 12221 1122223344 458999999965321
Q ss_pred ---c---hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCC
Q psy2518 89 ---A---ITKAYYR--GAQACVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLD 143 (208)
Q Consensus 89 ---~---~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~ 143 (208)
. ....+++ .+|++|+|.+++.......-..++..+.+..+ -...|||.|+.|...
T Consensus 185 ~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 185 KNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1 1222333 58999999988643332222355666666555 356888899998753
No 322
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.96 E-value=6.7e-05 Score=63.02 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=78.2
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhcC--CCCEEEEEeCC
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD----------SFEAAHSWKMKVENECG--EIPTVLVQNKI 139 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~piivvgnK~ 139 (208)
....+.++|++|+..-+.-|..++.+++++|||.++++-+ .+.+....+..+.+... +.|++|+.||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 4456899999999888888999999999999999986432 23334445555544433 89999999999
Q ss_pred CCCC------C------------CCCCHHHHHHHHHHh------------CCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 140 DLLD------Q------------SVVAPEEADLLSRAL------------GCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 140 Dl~~------~------------~~v~~~~~~~~~~~~------------~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
|+-. . +.-..+.+..+.+.. .+.+..++|.+..++..+|+.+.+.
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 9621 0 012345555554432 1245689999999999999987664
No 323
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.96 E-value=6.9e-05 Score=59.91 Aligned_cols=97 Identities=23% Similarity=0.269 Sum_probs=70.4
Q ss_pred cchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518 88 DAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166 (208)
Q Consensus 88 ~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 166 (208)
..+.+.-..+.|-.++++++.+|+ +..-+.+++...... ++..+++.||.||.+......++........|++.+.+
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 344555566688888888888775 566667766555443 67788889999996643332245556677789999999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy2518 167 SVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~~ 186 (208)
||+++.+++++...+...+.
T Consensus 148 s~~~~~~~~~l~~~l~~~~s 167 (301)
T COG1162 148 SAKNGDGLEELAELLAGKIT 167 (301)
T ss_pred cCcCcccHHHHHHHhcCCeE
Confidence 99999999999988776543
No 324
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00015 Score=60.48 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=71.5
Q ss_pred cccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEe
Q psy2518 58 MKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQN 137 (208)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgn 137 (208)
-|+.+.+..++++...+.+++.||||++.|..-.-..+-.+|.++.|.|....-.-+.+ ++++-+... +.||+-..|
T Consensus 65 RGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVcrlR--~iPI~TFiN 141 (528)
T COG4108 65 RGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVCRLR--DIPIFTFIN 141 (528)
T ss_pred cCceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHHhhc--CCceEEEee
Confidence 46677788888888899999999999999887666677789999999999865433332 333333222 799999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCC
Q psy2518 138 KIDLLDQSVVAPEEADLLSRALGC 161 (208)
Q Consensus 138 K~Dl~~~~~v~~~~~~~~~~~~~~ 161 (208)
|.|.... -+-+...+....+++
T Consensus 142 KlDR~~r--dP~ELLdEiE~~L~i 163 (528)
T COG4108 142 KLDREGR--DPLELLDEIEEELGI 163 (528)
T ss_pred ccccccC--ChHHHHHHHHHHhCc
Confidence 9997442 344555555555543
No 325
>KOG0468|consensus
Probab=97.86 E-value=4.8e-05 Score=66.23 Aligned_cols=69 Identities=25% Similarity=0.372 Sum_probs=56.3
Q ss_pred CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL 141 (208)
Q Consensus 70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl 141 (208)
.++.+.+++.||+|+-.|.......++-+|++++|+|+.+.-.++.-.-....+++ +.|+++|.||.|.
T Consensus 193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~---~~~i~vviNKiDR 261 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN---RLPIVVVINKVDR 261 (971)
T ss_pred cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc---cCcEEEEEehhHH
Confidence 57788999999999999998888899999999999999988777643322222222 7999999999995
No 326
>KOG0088|consensus
Probab=97.81 E-value=1.1e-05 Score=57.93 Aligned_cols=56 Identities=38% Similarity=0.775 Sum_probs=50.1
Q ss_pred cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccccc
Q psy2518 4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 59 (208)
Q Consensus 4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~ 59 (208)
+|.++.+..|.+|||||||+|-.+-.|++.|..|+...+...-.++|.....|-..
T Consensus 55 ~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~E 110 (218)
T KOG0088|consen 55 VNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLE 110 (218)
T ss_pred cccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999988777778889887777654
No 327
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.80 E-value=8.6e-05 Score=59.53 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=61.7
Q ss_pred eeeEEEecCceEEE-EE-EeeecCccccc----------cccccccceeeEEEEECCeEEEEEEEeCCChh---------
Q psy2518 27 ITKAYYRGAQACVI-TF-STIDRDSFEAA----------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE--------- 85 (208)
Q Consensus 27 ~~ki~~vG~s~~gk-~~-~~~~~~~f~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~--------- 85 (208)
.++|+++|.+|+|| +| +.++....... ...+..+......+.-++.++.+.++||+|--
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 68999999999999 32 33323222221 11233333334445557889999999999821
Q ss_pred ---------hhcchhHh---------hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518 86 ---------EFDAITKA---------YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL 141 (208)
Q Consensus 86 ---------~~~~~~~~---------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl 141 (208)
.|...... .=...|++|++.+.+.. .+..++ +..+++.....++|-|..|+|.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D--i~~mk~Ls~~vNvIPvIaKaD~ 154 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD--IEFMKRLSKRVNVIPVIAKADT 154 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH--HHHHHHHTTTSEEEEEESTGGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH--HHHHHHhcccccEEeEEecccc
Confidence 11111110 11247999999998752 122221 2334444456788999999997
No 328
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.78 E-value=0.00025 Score=58.04 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=64.7
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHH
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APE 150 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~ 150 (208)
.+.+.|.||+|...-.. ....-||.++++.+....+....+. ..+. ...-++|.||+|+...... ...
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~----E~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIM----ELADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhh----hhhheEEeehhcccchhHHHHHHH
Confidence 35678999998653221 1456799999997655454444332 1122 2334899999998543211 111
Q ss_pred HHHHHHHH-------hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 151 EADLLSRA-------LGCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 151 ~~~~~~~~-------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
+....... +..+++.+||+++.|++++++.+.+.+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 12211111 1147999999999999999999988754
No 329
>KOG0092|consensus
Probab=97.76 E-value=2.6e-05 Score=57.91 Aligned_cols=54 Identities=35% Similarity=0.840 Sum_probs=46.3
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~ 58 (208)
-+.+.++++.+|||||||+|.++-++++.|..++...+.....++|..-..|-.
T Consensus 48 ~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~Wvk 101 (200)
T KOG0092|consen 48 TVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVK 101 (200)
T ss_pred EeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999887777788876555544
No 330
>KOG0458|consensus
Probab=97.75 E-value=7.8e-05 Score=63.94 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=76.8
Q ss_pred ccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHH-------HHHHHHHHHhhcCCCC
Q psy2518 59 KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA-------AHSWKMKVENECGEIP 131 (208)
Q Consensus 59 ~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~p 131 (208)
|+.+..++..++.....+.|.|+||+..|-.-.-.-...||++++|.|++- ..|+. +++ ...+.+..+-.-
T Consensus 240 GvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrE-ha~llr~Lgi~q 317 (603)
T KOG0458|consen 240 GVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTRE-HALLLRSLGISQ 317 (603)
T ss_pred ceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHH-HHHHHHHcCcce
Confidence 445556666777777889999999988776655555678999999999984 33332 111 122334444456
Q ss_pred EEEEEeCCCCCCCCCCCHHHHH----HHH-HHhC-----CeEEEEecCCCCCHHHH
Q psy2518 132 TVLVQNKIDLLDQSVVAPEEAD----LLS-RALG-----CRLMRTSVKEDINVNSI 177 (208)
Q Consensus 132 iivvgnK~Dl~~~~~v~~~~~~----~~~-~~~~-----~~~~e~Sa~~~~~i~~~ 177 (208)
++|+.||.|+.+..+---+++. .+. +..| +.|+.||+.+|+|+-..
T Consensus 318 livaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 318 LIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred EEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 7888999999654332223222 233 3333 47999999999987644
No 331
>KOG0461|consensus
Probab=97.73 E-value=0.00041 Score=56.37 Aligned_cols=162 Identities=14% Similarity=0.127 Sum_probs=88.6
Q ss_pred ceeeeEEEecCceEEEE-EE-----eeecCccccccccc---cccceeeEEEEE-------CCeEEEEEEEeCCChhhhc
Q psy2518 25 DAITKAYYRGAQACVIT-FS-----TIDRDSFEAAHSWK---MKVSIKRTIKEC-------EGEEVRLMLWDTAGQEEFD 88 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk~-~~-----~~~~~~f~~~~~~t---~~~~~~~~~~~~-------~~~~~~l~i~Dt~g~~~~~ 88 (208)
+..+++-++|.-.+||+ +- .-....|+....++ +..|.....+.+ .++..++.+.|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 56688899999999992 11 11133444332222 112222222222 4677889999999976532
Q ss_pred chhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCEEEEEeCCCCCC--CCCCCH-HHHHHHHHHh-----
Q psy2518 89 AITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLD--QSVVAP-EEADLLSRAL----- 159 (208)
Q Consensus 89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~piivvgnK~Dl~~--~~~v~~-~~~~~~~~~~----- 159 (208)
+..-.-..-.|..++|.|+...-.-+.... .+-++. -...++|.||.|+.. +|.... +.+....+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 222222334578899999875432222211 112222 245677778877632 233222 2233333332
Q ss_pred --CCeEEEEecCCC----CCHHHHHHHHHHHHHHHhh
Q psy2518 160 --GCRLMRTSVKED----INVNSIFRYLTTKCLSELR 190 (208)
Q Consensus 160 --~~~~~e~Sa~~~----~~i~~~f~~i~~~~~~~~~ 190 (208)
+.+++++||+.| +++.++.+.+-+.+....+
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 258999999999 6677777766666655443
No 332
>KOG0091|consensus
Probab=97.71 E-value=7e-06 Score=59.36 Aligned_cols=54 Identities=41% Similarity=0.834 Sum_probs=45.0
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccccc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 59 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~ 59 (208)
..|.+++|++|||||||+|++.-|-++....|+...+......+|.....|-..
T Consensus 53 ~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~e 106 (213)
T KOG0091|consen 53 RPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKE 106 (213)
T ss_pred CCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHH
Confidence 468999999999999999999999999988888776666667888776666543
No 333
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.69 E-value=0.00015 Score=58.80 Aligned_cols=103 Identities=16% Similarity=0.110 Sum_probs=62.5
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH--H
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP--E 150 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~--~ 150 (208)
.+.+.|.||+|.-.. .......+|.++++-... +-+++......+. ..|.+++.||+|+........ .
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~----~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGLM----EIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHHh----hhccEEEEEcccccchhHHHHHHH
Confidence 467889999985321 123456788888885433 3333433333332 577899999999854221100 0
Q ss_pred H----HHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 151 E----ADLLSRA---LGCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 151 ~----~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
. ...+... +..+++.+||+++.|++++++.+.+..
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 0 0111111 123689999999999999999998863
No 334
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.68 E-value=0.00015 Score=56.72 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=42.6
Q ss_pred EEEEEEeCCChhh-------------hcchhHhhhc-CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy2518 74 VRLMLWDTAGQEE-------------FDAITKAYYR-GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKI 139 (208)
Q Consensus 74 ~~l~i~Dt~g~~~-------------~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~ 139 (208)
..+.+.||||... ...+...|++ ..+++++|.|....-.-.........+... ..|.++|.||.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~--~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ--GERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc--CCcEEEEEECC
Confidence 4678899999632 2234556777 456999999876532222222222222222 68999999999
Q ss_pred CCCC
Q psy2518 140 DLLD 143 (208)
Q Consensus 140 Dl~~ 143 (208)
|..+
T Consensus 203 D~~~ 206 (240)
T smart00053 203 DLMD 206 (240)
T ss_pred CCCC
Confidence 9854
No 335
>KOG3887|consensus
Probab=97.64 E-value=0.00028 Score=54.56 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=70.8
Q ss_pred CeEEEEEEEeCCChhhhcch---hHhhhcCCcEEEEEEeCCChhhHHHHHHH---HHHHHhhcCCCCEEEEEeCCCCCC-
Q psy2518 71 GEEVRLMLWDTAGQEEFDAI---TKAYYRGAQACVITFSTIDRDSFEAAHSW---KMKVENECGEIPTVLVQNKIDLLD- 143 (208)
Q Consensus 71 ~~~~~l~i~Dt~g~~~~~~~---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~---~~~~~~~~~~~piivvgnK~Dl~~- 143 (208)
+.-+.+++||.|||..+-.. ....++++-+.++|.|.-+. -.+.+... ....-+..+++.+=+...|.|-..
T Consensus 72 ~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 72 NSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred hhhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 35578999999999554321 23457899999999997653 23333333 333333344777778889999532
Q ss_pred C------CCCCHHHHHHHHH----HhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 144 Q------SVVAPEEADLLSR----ALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 144 ~------~~v~~~~~~~~~~----~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
+ |.+-....+.++. ..++.|+-+|-.+ ..|.|.|..+++++..+.
T Consensus 151 d~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD-HSIfEAFSkvVQkLipqL 205 (347)
T KOG3887|consen 151 DFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD-HSIFEAFSKVVQKLIPQL 205 (347)
T ss_pred hhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecc-hHHHHHHHHHHHHHhhhc
Confidence 1 1111111112221 1234566677664 679999999999887554
No 336
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.63 E-value=8.5e-05 Score=61.47 Aligned_cols=160 Identities=13% Similarity=0.054 Sum_probs=75.7
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCcccccccccccc-c--eeeEEEEECCeEEEEEEEeCCChhhhcchhH-----hh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKV-S--IKRTIKECEGEEVRLMLWDTAGQEEFDAITK-----AY 94 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~-~--~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~-----~~ 94 (208)
...+.|.+.|.+|+|| +++.+.+-.-.++....+|+ + .....+.... .-.+.+||.||.....-... .-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4578999999999999 34444332222222222222 1 2223333221 12489999999532211122 23
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCEEEEEeCCCC-------CCCCCCCHHHHHHH----HHH----
Q psy2518 95 YRGAQACVITFSTIDRDSFEAAHSWK-MKVENECGEIPTVLVQNKIDL-------LDQSVVAPEEADLL----SRA---- 158 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~piivvgnK~Dl-------~~~~~v~~~~~~~~----~~~---- 158 (208)
+..-|.+|++.+. .|....-|+ ..+.+. ..|+++|-+|+|. ...+..++++..+. +.+
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 5678988887753 244333333 333333 6899999999995 12234444443332 222
Q ss_pred hCC---eEEEEecCCCC--CHHHHHHHHHHHHHHHhhh
Q psy2518 159 LGC---RLMRTSVKEDI--NVNSIFRYLTTKCLSELRQ 191 (208)
Q Consensus 159 ~~~---~~~e~Sa~~~~--~i~~~f~~i~~~~~~~~~~ 191 (208)
.|+ ++|-+|+.+-. +...+.+.+.+.+...+..
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 243 68999998754 5667777777776655443
No 337
>KOG0080|consensus
Probab=97.61 E-value=2e-05 Score=56.86 Aligned_cols=60 Identities=35% Similarity=0.771 Sum_probs=49.1
Q ss_pred cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccccccee
Q psy2518 4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIK 63 (208)
Q Consensus 4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~~~~~ 63 (208)
|-..|.+.+|-+|||||||+|+.+-.-++.|..|+...+.....+.|..-..|--.+|.|
T Consensus 53 m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Y 112 (209)
T KOG0080|consen 53 MQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLY 112 (209)
T ss_pred EEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhh
Confidence 456889999999999999999999999999999999877776677777655555444444
No 338
>KOG0079|consensus
Probab=97.60 E-value=2e-05 Score=56.08 Aligned_cols=54 Identities=37% Similarity=0.826 Sum_probs=47.6
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~ 58 (208)
-++|.+|.|.+||+||||+|+.+..-++.|..++...+......+|.....|-.
T Consensus 51 ~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLe 104 (198)
T KOG0079|consen 51 DINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLE 104 (198)
T ss_pred ecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHH
Confidence 467999999999999999999999999999999998888888888887655544
No 339
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.59 E-value=0.001 Score=55.13 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=47.4
Q ss_pred eeEEEecCceEEE--EEEeeecCccc-cccc-cccccceeeEEEEECCe---------------EEEEEEEeCCChhhh-
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQEEF- 87 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~- 87 (208)
++|.++|..++|| +|+.+...... .+|+ .|+ +-..-.+.+.+. +.++++.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi--~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTI--EPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccc--cceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 6899999999999 35555544422 2222 222 222223333322 135899999995421
Q ss_pred ---cchhHh---hhcCCcEEEEEEeCC
Q psy2518 88 ---DAITKA---YYRGAQACVITFSTI 108 (208)
Q Consensus 88 ---~~~~~~---~~~~~d~ii~v~d~~ 108 (208)
..+... .++.+|++++|+|..
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 122233 367899999999984
No 340
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.56 E-value=0.00022 Score=58.20 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=69.2
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccc----------cccccccceeeEEEEECCeEEEEEEEeCCChhhh-----
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAA----------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF----- 87 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----- 87 (208)
.-.+.|+++|.+|+|| +++.++....... ..+|+.+......+.-+|..+.+.+.||+|--.+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3468899999999999 3454444422221 4566666666666666888999999999992110
Q ss_pred ---------cchhHhh------------h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518 88 ---------DAITKAY------------Y--RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL 141 (208)
Q Consensus 88 ---------~~~~~~~------------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl 141 (208)
......| + .+.|+||+...++. .....++ +..+++....+-+|=|.-|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLD--IEAMKRLSKRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHH--HHHHHHHhcccCeeeeeecccc
Confidence 0001111 1 24799999988764 2333331 2333444444556667789997
No 341
>KOG0394|consensus
Probab=97.55 E-value=5.9e-05 Score=55.70 Aligned_cols=49 Identities=41% Similarity=0.815 Sum_probs=41.2
Q ss_pred cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
+..+++++.|++|||||||+|+++.-..+.|...|...+..-..++|..
T Consensus 51 v~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~ 99 (210)
T KOG0394|consen 51 VQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFEN 99 (210)
T ss_pred EEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhcc
Confidence 4567999999999999999999999999999999987666555566654
No 342
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00026 Score=63.25 Aligned_cols=115 Identities=15% Similarity=0.199 Sum_probs=76.9
Q ss_pred cceeeeEEEecCceEEEE-E-E--eeecCccc------------c--ccccccccceeeEEEEECCe-EEEEEEEeCCCh
Q psy2518 24 FDAITKAYYRGAQACVIT-F-S--TIDRDSFE------------A--AHSWKMKVSIKRTIKECEGE-EVRLMLWDTAGQ 84 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk~-~-~--~~~~~~f~------------~--~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~g~ 84 (208)
.....+|-++|....||+ + - -+..+... + +....-|+.+........-+ .+.+++.||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 456788888988888882 1 0 00011111 0 01111233333433333323 688999999999
Q ss_pred hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518 85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL 141 (208)
Q Consensus 85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl 141 (208)
-.|.......++-+|++++|+|....-..+.-.-|...... +.|.+++.||.|.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR 140 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDR 140 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccc
Confidence 99999999999999999999999887655554455544433 7999999999996
No 343
>KOG0087|consensus
Probab=97.46 E-value=5.5e-05 Score=57.00 Aligned_cols=54 Identities=41% Similarity=0.820 Sum_probs=45.5
Q ss_pred cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccc
Q psy2518 4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 57 (208)
Q Consensus 4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t 57 (208)
.+.++..+..++|||||||+|+.....++.|..|+...+.......|.....|-
T Consensus 56 ~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL 109 (222)
T KOG0087|consen 56 VNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWL 109 (222)
T ss_pred eeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHH
Confidence 568899999999999999999999999999999999877665667776544443
No 344
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.44 E-value=0.00064 Score=40.53 Aligned_cols=45 Identities=24% Similarity=0.250 Sum_probs=30.6
Q ss_pred cCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518 96 RGAQACVITFSTIDRD--SFEAAHSWKMKVENECGEIPTVLVQNKID 140 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~piivvgnK~D 140 (208)
.-++++++++|++..- |.+.-...+.+++...++.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3478999999998743 55665667788888877899999999998
No 345
>KOG1532|consensus
Probab=97.44 E-value=0.0016 Score=51.49 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=62.5
Q ss_pred EEEEEEEeCCChhh-hc-----chhHhhhc--CCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518 73 EVRLMLWDTAGQEE-FD-----AITKAYYR--GAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDL 141 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~-~~-----~~~~~~~~--~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl 141 (208)
.....+.|||||-. |. ++....++ ...+++++.|... +..|=.---+--.+. +.-..|+|++.||+|+
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil-yktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSIL-YKTKLPFIVVFNKTDV 193 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHH-HhccCCeEEEEecccc
Confidence 35578999999843 32 12222233 4456666777533 333321111111111 1117999999999998
Q ss_pred CCCCCC----C-HHHHHHHHH--------------------H-hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 142 LDQSVV----A-PEEADLLSR--------------------A-LGCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 142 ~~~~~v----~-~~~~~~~~~--------------------~-~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
.+..-. + -+..++... - .++..+-|||.+|.|.+++|..+-+.+-
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 653100 0 000000000 0 1457899999999999999998876654
No 346
>KOG0093|consensus
Probab=97.43 E-value=7.1e-05 Score=53.29 Aligned_cols=53 Identities=36% Similarity=0.819 Sum_probs=45.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~ 58 (208)
..+.|+.|++|||||||+|+..--.++.|.-|....+......+|+....+..
T Consensus 65 r~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~t 117 (193)
T KOG0093|consen 65 RSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWIT 117 (193)
T ss_pred ecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHH
Confidence 35689999999999999999999999999999998777777788887666654
No 347
>KOG0098|consensus
Probab=97.36 E-value=5.2e-05 Score=56.10 Aligned_cols=56 Identities=38% Similarity=0.839 Sum_probs=49.1
Q ss_pred cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccccc
Q psy2518 4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 59 (208)
Q Consensus 4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~ 59 (208)
++.++.-++|++|||||||.|+++.+-++.|..|+...+..-..++|+.-..|-.+
T Consensus 48 ~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D 103 (216)
T KOG0098|consen 48 VTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLED 103 (216)
T ss_pred EEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHH
Confidence 56789999999999999999999999999999999987777778889876666654
No 348
>KOG1547|consensus
Probab=97.36 E-value=0.00081 Score=52.04 Aligned_cols=141 Identities=12% Similarity=0.147 Sum_probs=76.0
Q ss_pred eeeEEEecCceEEEE--EEeeecCccc---------cccccccccceeeEEEEECCeEEEEEEEeCCCh-----------
Q psy2518 27 ITKAYYRGAQACVIT--FSTIDRDSFE---------AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------- 84 (208)
Q Consensus 27 ~~ki~~vG~s~~gk~--~~~~~~~~f~---------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------- 84 (208)
.|+|++||.||+||+ .+.++..... ..++.|+.+......+.-+|.+.++.+.||+|-
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 589999999999992 2211111111 134555555555566666788999999999982
Q ss_pred -------hhhcchh--------Hhhhc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCC--CC
Q psy2518 85 -------EEFDAIT--------KAYYR--GAQACVITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLL--DQ 144 (208)
Q Consensus 85 -------~~~~~~~--------~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~--~~ 144 (208)
+.|.... ...+. ..|+|++....+- .|+.-+ .+.+..+.+. .-++-|.-|+|.. ++
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v---vNvvPVIakaDtlTleE 201 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV---VNVVPVIAKADTLTLEE 201 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh---heeeeeEeecccccHHH
Confidence 1111111 11121 3688888887764 344433 2333333332 3455566788852 12
Q ss_pred CCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518 145 SVVAPEEADLLSRALGCRLMRTSVKED 171 (208)
Q Consensus 145 ~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 171 (208)
|.-=.+.+++-...+++.++.--+.+-
T Consensus 202 r~~FkqrI~~el~~~~i~vYPq~~fde 228 (336)
T KOG1547|consen 202 RSAFKQRIRKELEKHGIDVYPQDSFDE 228 (336)
T ss_pred HHHHHHHHHHHHHhcCccccccccccc
Confidence 222222333344456666665544443
No 349
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.34 E-value=0.0017 Score=51.92 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=45.2
Q ss_pred EEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCe---------------EEEEEEEeCCChhhh----c
Q psy2518 30 AYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQEEF----D 88 (208)
Q Consensus 30 i~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~----~ 88 (208)
+.++|..++|| +|+.+..........|...++...-.+.+.+. +..+++.|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 46899999999 35555444432211122212323333334332 235899999995421 1
Q ss_pred chhHhh---hcCCcEEEEEEeCC
Q psy2518 89 AITKAY---YRGAQACVITFSTI 108 (208)
Q Consensus 89 ~~~~~~---~~~~d~ii~v~d~~ 108 (208)
.+...+ ++.+|+++.|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 233333 57899999999863
No 350
>KOG0095|consensus
Probab=97.29 E-value=9.3e-05 Score=52.79 Aligned_cols=55 Identities=38% Similarity=0.782 Sum_probs=46.9
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 59 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~ 59 (208)
-.+|.-++|++|||||||+|++.-.-++.-..++...+...++-+|.--..|--.
T Consensus 50 ev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlre 104 (213)
T KOG0095|consen 50 EVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLRE 104 (213)
T ss_pred EECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHH
Confidence 4688999999999999999999999999999998888888888888765555443
No 351
>KOG0078|consensus
Probab=97.26 E-value=5.6e-05 Score=56.94 Aligned_cols=54 Identities=41% Similarity=0.840 Sum_probs=46.4
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~ 58 (208)
.+.+..+.|++|||||||+|+..++-++.|..|+...+......+|.....|--
T Consensus 55 ~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~ 108 (207)
T KOG0078|consen 55 ELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIK 108 (207)
T ss_pred EeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHH
Confidence 457789999999999999999999999999999998777777888886555543
No 352
>KOG2655|consensus
Probab=97.23 E-value=0.00089 Score=55.02 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=80.9
Q ss_pred eeeEEEecCceEEE--EEEeeecCcccc---------ccccccccceeeEEEEECCeEEEEEEEeCCChh----------
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEA---------AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE---------- 85 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~---------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~---------- 85 (208)
.|.++++|.+|+|| +++.++...+.. ....|+.++.....+.-+|..+.+.+.||||--
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48899999999999 334433443332 223355555555555557889999999999821
Q ss_pred --------hhc-------chhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--CC
Q psy2518 86 --------EFD-------AITKAYYR--GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ--SV 146 (208)
Q Consensus 86 --------~~~-------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~--~~ 146 (208)
.|. .+.+..+. ..|+||+....+.. .+..++ +..+++.+....+|-|.-|+|.... ..
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~lT~~El~ 177 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADTLTKDELN 177 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeeccccCCHHHHH
Confidence 111 11111222 68999999987643 222221 2334444446677778889997331 11
Q ss_pred CCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518 147 VAPEEADLLSRALGCRLMRTSVKED 171 (208)
Q Consensus 147 v~~~~~~~~~~~~~~~~~e~Sa~~~ 171 (208)
...+.+.+-....++++|.......
T Consensus 178 ~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 178 QFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHcCcceecCCCCcc
Confidence 2223344445556676665544443
No 353
>KOG0099|consensus
Probab=97.09 E-value=0.0038 Score=49.01 Aligned_cols=117 Identities=20% Similarity=0.198 Sum_probs=74.0
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhcC--CCCEEEEEeCC
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD----------SFEAAHSWKMKVENECG--EIPTVLVQNKI 139 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~piivvgnK~ 139 (208)
.++.++++|.+||..-+.-|-+++.+..++|+|...+.-. -+++....+..+.+..- .+.+|+..||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 4566999999999888888999999999999998876421 12222222333332221 57899999999
Q ss_pred CCCCC----------------------------CCCCH----------HHHHHHHHHh-----CCeEEEEecCCCCCHHH
Q psy2518 140 DLLDQ----------------------------SVVAP----------EEADLLSRAL-----GCRLMRTSVKEDINVNS 176 (208)
Q Consensus 140 Dl~~~----------------------------~~v~~----------~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~ 176 (208)
|+..+ ..-++ ++........ .|-+..++|.+-+||..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 97321 00000 1111111111 13456788999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 177 IFRYLTTKCLSE 188 (208)
Q Consensus 177 ~f~~i~~~~~~~ 188 (208)
+|+.....+...
T Consensus 360 VFnDcrdiIqr~ 371 (379)
T KOG0099|consen 360 VFNDCRDIIQRM 371 (379)
T ss_pred HHHHHHHHHHHH
Confidence 999876666543
No 354
>KOG1486|consensus
Probab=97.00 E-value=0.011 Score=46.25 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=92.3
Q ss_pred eeeeEEEecCceEEE-EEEeeecCccc--cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch-------hHhhh
Q psy2518 26 AITKAYYRGAQACVI-TFSTIDRDSFE--AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-------TKAYY 95 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-------~~~~~ 95 (208)
..-+|+++|-.++|| +++..+...-. ..|.-|. .....-.+.++|.. +++.|-||.-.-.+. .-...
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTT-LtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTT-LTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeE-EEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEe
Confidence 346789999999999 44432232222 2233222 12344556666666 789999985433221 12346
Q ss_pred cCCcEEEEEEeCCChhhHHHH-HHHHHHHH--------------------------------------------------
Q psy2518 96 RGAQACVITFSTIDRDSFEAA-HSWKMKVE-------------------------------------------------- 124 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~-------------------------------------------------- 124 (208)
+.||.++.|.|.+..+.-..+ .+-++.+-
T Consensus 138 rtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naev 217 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEV 217 (364)
T ss_pred ecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceE
Confidence 789999999999876443322 11122210
Q ss_pred ----------------hhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 125 ----------------NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 125 ----------------~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
.+..-.+++-|-||.| +++.++...+|++.+- +.+|+...-|++.+.+.+.+.+-
T Consensus 218 l~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 218 LFREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhc
Confidence 0000134555667776 4788889999987663 56788888999999998888753
No 355
>KOG0081|consensus
Probab=96.98 E-value=9.1e-05 Score=53.41 Aligned_cols=52 Identities=37% Similarity=0.759 Sum_probs=43.0
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~ 58 (208)
.++++-|++|||||||+|+++--.++...-|....|.-..+++|.....|--
T Consensus 63 r~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlS 114 (219)
T KOG0081|consen 63 RGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLS 114 (219)
T ss_pred cceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHH
Confidence 5789999999999999999999998888888877776666777777665543
No 356
>KOG0097|consensus
Probab=96.92 E-value=0.00024 Score=50.17 Aligned_cols=51 Identities=39% Similarity=0.929 Sum_probs=38.7
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~ 56 (208)
..|+.++|++||+||||+|+.+-+-++.|..|....+.......++.-.+|
T Consensus 55 vsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlssw 105 (215)
T KOG0097|consen 55 VSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 105 (215)
T ss_pred ecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHH
Confidence 357889999999999999999999999999998775443323444443333
No 357
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.87 E-value=0.015 Score=43.25 Aligned_cols=85 Identities=22% Similarity=0.200 Sum_probs=60.6
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE 151 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~ 151 (208)
..+.+.|.||++... ......+..+|.++++...+ ..+...+..++..+.+. +.|+.+|.||+|... -..++
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~---~~~~~ 162 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF--GIPVGVVINKYDLND---EIAEE 162 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc--CCCEEEEEeCCCCCc---chHHH
Confidence 467789999996532 23345678899999999988 44666677766666543 467889999999633 23456
Q ss_pred HHHHHHHhCCeEE
Q psy2518 152 ADLLSRALGCRLM 164 (208)
Q Consensus 152 ~~~~~~~~~~~~~ 164 (208)
.++++++.+++++
T Consensus 163 ~~~~~~~~~~~vl 175 (179)
T cd03110 163 IEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHcCCCeE
Confidence 7778888887665
No 358
>KOG0083|consensus
Probab=96.85 E-value=0.0006 Score=47.81 Aligned_cols=51 Identities=39% Similarity=0.882 Sum_probs=40.3
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~ 56 (208)
..+..|+|++|||||||+|+++--.++....+....+..-...+|+.-..|
T Consensus 42 ~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~w 92 (192)
T KOG0083|consen 42 MDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAW 92 (192)
T ss_pred cCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHH
Confidence 357789999999999999999999998888888776665556666654444
No 359
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.80 E-value=0.00052 Score=49.19 Aligned_cols=52 Identities=10% Similarity=-0.116 Sum_probs=34.5
Q ss_pred eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518 29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ 84 (208)
Q Consensus 29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~ 84 (208)
+++++|.+++|| +++++....+.. ...+.|.......+.+++ .+.||||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 899999999999 355555555442 333344444455555554 4799999994
No 360
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.75 E-value=0.00048 Score=50.13 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=35.7
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG 83 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g 83 (208)
...+++++|.+++|| +++++. +.....+.++.|.......+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~-~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK-GRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh-CCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 357889999999999 344444 344556677777543333333333 589999998
No 361
>KOG0467|consensus
Probab=96.73 E-value=0.004 Score=55.35 Aligned_cols=79 Identities=16% Similarity=0.276 Sum_probs=61.6
Q ss_pred ccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHH---HH-HHHHHHHHhhcCCC
Q psy2518 55 SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE---AA-HSWKMKVENECGEI 130 (208)
Q Consensus 55 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~-~~~~~~~~~~~~~~ 130 (208)
..|-|+.+....+..-.+.+.+++.|+||+-.|.+......+-+|++++..|+...-.-+ -+ +.|.+ ..
T Consensus 53 eq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-------~~ 125 (887)
T KOG0467|consen 53 EQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-------GL 125 (887)
T ss_pred hhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-------cC
Confidence 345566777777777778899999999999999999999999999999999997654333 22 12332 45
Q ss_pred CEEEEEeCCC
Q psy2518 131 PTVLVQNKID 140 (208)
Q Consensus 131 piivvgnK~D 140 (208)
..++|.||.|
T Consensus 126 ~~~lvinkid 135 (887)
T KOG0467|consen 126 KPILVINKID 135 (887)
T ss_pred ceEEEEehhh
Confidence 6788999999
No 362
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.66 E-value=0.0047 Score=46.38 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=42.4
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 132 TVLVQNKIDLLDQSVVAPEEADLLSRAL--GCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 132 iivvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
=++|.||.||...-..+.+...+-+++. +.+++++|+++|+|+++++.++....
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 4788999999776556556666666655 46999999999999999998877653
No 363
>KOG0410|consensus
Probab=96.64 E-value=0.00079 Score=54.28 Aligned_cols=142 Identities=16% Similarity=0.041 Sum_probs=82.4
Q ss_pred eEEEecCceEEEE--EEe------eecCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChh--hhcch------h
Q psy2518 29 KAYYRGAQACVIT--FST------IDRDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQE--EFDAI------T 91 (208)
Q Consensus 29 ki~~vG~s~~gk~--~~~------~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~--~~~~~------~ 91 (208)
-|.+||=+++||+ +.. +..++.-.+-+||. +..+. .|.. +.+.||.|-- -...+ .
T Consensus 180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~------h~a~Lpsg~~--vlltDTvGFisdLP~~LvaAF~AT 251 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTL------HSAHLPSGNF--VLLTDTVGFISDLPIQLVAAFQAT 251 (410)
T ss_pred eEEEEeecCccHHHHHHHHHhhhcCccchhheeccchh------hhccCCCCcE--EEEeechhhhhhCcHHHHHHHHHH
Confidence 4678999999992 222 22233333444443 22233 3444 6788998842 11122 2
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC----EEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIP----TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p----iivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 166 (208)
-.....||.++-|.|+++|.--.....-+.-+.+..- ..| ++=|-||.|..+.. ++. ..++ -+.+
T Consensus 252 LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~e~-------E~n~--~v~i 321 (410)
T KOG0410|consen 252 LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-VEE-------EKNL--DVGI 321 (410)
T ss_pred HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-Ccc-------ccCC--cccc
Confidence 2346789999999999998655443333333332211 222 34466888864421 211 1222 5789
Q ss_pred ecCCCCCHHHHHHHHHHHHHHH
Q psy2518 167 SVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
||++|.|.+++...+-..+...
T Consensus 322 saltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred ccccCccHHHHHHHHHHHhhhh
Confidence 9999999999999887776554
No 364
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.64 E-value=0.027 Score=46.71 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=63.4
Q ss_pred EEEEeCCChhhhcc--hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHH
Q psy2518 76 LMLWDTAGQEEFDA--ITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEE 151 (208)
Q Consensus 76 l~i~Dt~g~~~~~~--~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~ 151 (208)
+.+.||.|+|.|-+ ++-..-+..|-.+++.-.++.-+-- .++.+--+... ..|++++.||+|+..+..+ ..++
T Consensus 203 VsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a~--~lPviVvvTK~D~~~ddr~~~v~~e 279 (527)
T COG5258 203 VSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALAM--ELPVIVVVTKIDMVPDDRFQGVVEE 279 (527)
T ss_pred EEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhhh--cCCEEEEEEecccCcHHHHHHHHHH
Confidence 67899999998854 3334456789999999988864321 12222111111 7999999999998542100 0111
Q ss_pred HHH----------------------HHHHh--CC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 152 ADL----------------------LSRAL--GC-RLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 152 ~~~----------------------~~~~~--~~-~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
+.+ .+.+. +. |+|.+|+.+|.|++-+.+ +...+
T Consensus 280 i~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~L 337 (527)
T COG5258 280 ISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLL 337 (527)
T ss_pred HHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhC
Confidence 111 11112 23 899999999999764433 33333
No 365
>KOG1143|consensus
Probab=96.64 E-value=0.067 Score=44.33 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=63.6
Q ss_pred EEEEEeCCChhhhcchhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--------
Q psy2518 75 RLMLWDTAGQEEFDAITKAYY--RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ-------- 144 (208)
Q Consensus 75 ~l~i~Dt~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~-------- 144 (208)
.+.+.|-+|+.+|....-.-+ -..|.+++|++.+..-... ..+.+-.+... +.|++++.+|.|+.+.
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~~tv~ 326 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL--NIPFFVLVTKMDLVDRQGLKKTVK 326 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh--CCCeEEEEEeeccccchhHHHHHH
Confidence 478999999998876333222 2478889999887643321 12222222222 7999999999998653
Q ss_pred ----------------CCCCHHHHHHHHHHh---CC-eEEEEecCCCCCHHHH
Q psy2518 145 ----------------SVVAPEEADLLSRAL---GC-RLMRTSVKEDINVNSI 177 (208)
Q Consensus 145 ----------------~~v~~~~~~~~~~~~---~~-~~~e~Sa~~~~~i~~~ 177 (208)
+.-+++++...+.+. ++ ++|.+|+.+|+|++-+
T Consensus 327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 222334444444443 23 8999999999987643
No 366
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.62 E-value=0.007 Score=44.31 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=44.8
Q ss_pred EEEEEeCCChhh----hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy2518 75 RLMLWDTAGQEE----FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKI 139 (208)
Q Consensus 75 ~l~i~Dt~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~ 139 (208)
.+.|.||||... ...+...++..+|++++|.+.++..+-.....|....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 478999999732 2356778889999999999999866655555555444443 34588888884
No 367
>KOG0466|consensus
Probab=96.62 E-value=0.0019 Score=51.72 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=69.6
Q ss_pred EEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--C
Q psy2518 75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID----RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--A 148 (208)
Q Consensus 75 ~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~ 148 (208)
.+.+.|++|++-.......-..--|++++....+. |++-+++.. .++.+ -..++++.||.||..+.+- .
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~---LkhiiilQNKiDli~e~~A~eq 200 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK---LKHIIILQNKIDLIKESQALEQ 200 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh---hceEEEEechhhhhhHHHHHHH
Confidence 46789999998765532222223455666655442 444444422 22222 2568999999999543221 1
Q ss_pred HHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518 149 PEEADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKCLSELR 190 (208)
Q Consensus 149 ~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 190 (208)
.+++..|.+.. +.+++.+||.-..||+-+.+.+++.+....+
T Consensus 201 ~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 201 HEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred HHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 23334444432 4699999999999999999999998765433
No 368
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.59 E-value=0.0053 Score=49.29 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=40.0
Q ss_pred CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL--GCRLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 129 ~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
..+-++|.||+|+........+...+..+.. +.+++++||++|.|++++.+++.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4677899999999542222233344444443 4689999999999999999998764
No 369
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.014 Score=46.79 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=65.8
Q ss_pred ccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy2518 59 KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNK 138 (208)
Q Consensus 59 ~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK 138 (208)
|+.+....+.++-.+-.+-..|+||+-.|-+..-.-....|+.|+|++.++..--+.....+ +.+..+-+.++++.||
T Consensus 60 GITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larqvGvp~ivvflnK 137 (394)
T COG0050 60 GITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQVGVPYIVVFLNK 137 (394)
T ss_pred CceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhhcCCcEEEEEEec
Confidence 33444455555555556788999999888664444456789999999999853322211111 1222223356677899
Q ss_pred CCCCCCCCC---CHHHHHHHHHHhCC-----eEEEEecCC
Q psy2518 139 IDLLDQSVV---APEEADLLSRALGC-----RLMRTSVKE 170 (208)
Q Consensus 139 ~Dl~~~~~v---~~~~~~~~~~~~~~-----~~~e~Sa~~ 170 (208)
+|+.+.+.. -+.+.+++..++++ +++.-||..
T Consensus 138 ~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 138 VDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence 999653322 12345556666664 577777664
No 370
>KOG0393|consensus
Probab=96.55 E-value=0.0019 Score=48.80 Aligned_cols=49 Identities=39% Similarity=0.716 Sum_probs=33.2
Q ss_pred cccc-CCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518 3 NRIC-EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51 (208)
Q Consensus 3 ~~~~-~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~ 51 (208)
+... .|..+.|.+|||||||+|+++....+-...-+...|......+|.
T Consensus 44 ~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~ 93 (198)
T KOG0393|consen 44 NVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFE 93 (198)
T ss_pred EEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHH
Confidence 3455 489999999999999999996656555555554344433334443
No 371
>KOG0465|consensus
Probab=96.50 E-value=0.029 Score=48.98 Aligned_cols=66 Identities=18% Similarity=0.381 Sum_probs=51.1
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL 141 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl 141 (208)
.+.++|.||||+-.|.-.....++-.|+++++.|....-.-+..--|. ++.++ +.|.+...||.|.
T Consensus 103 ~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~ry--~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 103 DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKRY--NVPRICFINKMDR 168 (721)
T ss_pred cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHH-HHHhc--CCCeEEEEehhhh
Confidence 778999999999999888888899999999999987654333333343 33333 7899999999994
No 372
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.29 E-value=0.0015 Score=48.44 Aligned_cols=55 Identities=15% Similarity=0.025 Sum_probs=35.2
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ 84 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~ 84 (208)
..++++++|.+++|| +++++....+. ...++.+.......+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 457899999999999 35655555553 223333333444444444 34789999984
No 373
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.26 E-value=0.022 Score=54.54 Aligned_cols=116 Identities=22% Similarity=0.107 Sum_probs=65.3
Q ss_pred ccceeeeE-EEecCceEEE-EEEeeecCcccccc----ccc--cccceeeEEEEECCeEEEEEEEeCCChh--------h
Q psy2518 23 EFDAITKA-YYRGAQACVI-TFSTIDRDSFEAAH----SWK--MKVSIKRTIKECEGEEVRLMLWDTAGQE--------E 86 (208)
Q Consensus 23 ~~~~~~ki-~~vG~s~~gk-~~~~~~~~~f~~~~----~~t--~~~~~~~~~~~~~~~~~~l~i~Dt~g~~--------~ 86 (208)
.+.+.+.- +++|+.|+|| +++...+-.|.-.. ..+ ++.... -...+.++ -.++||+|.- .
T Consensus 106 ~~lY~LPWYlviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~~---avliDtaG~y~~~~~~~~~ 181 (1169)
T TIGR03348 106 RYLYDLPWYLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGGTRN-CDWWFTDE---AVLIDTAGRYTTQDSDPEE 181 (1169)
T ss_pred hhhhcCCCEEEECCCCCchhHHHHhCCCCCcCchhhccccccCCCCCcc-cceEecCC---EEEEcCCCccccCCCcccc
Confidence 34444443 5679999999 44433344443221 111 111111 01112222 3488999831 1
Q ss_pred hcchhHhh---------hcCCcEEEEEEeCCChhh---------HHHHHHHHHHHHhhcC-CCCEEEEEeCCCCC
Q psy2518 87 FDAITKAY---------YRGAQACVITFSTIDRDS---------FEAAHSWKMKVENECG-EIPTVLVQNKIDLL 142 (208)
Q Consensus 87 ~~~~~~~~---------~~~~d~ii~v~d~~~~~s---------~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~ 142 (208)
....|..+ -+..|++|+++|+.+--. -..+...+.++.+..+ ..|+.|+.||+|+.
T Consensus 182 ~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 182 DAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred cHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 11223333 246899999999865421 1344566777777767 99999999999985
No 374
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.13 E-value=0.019 Score=42.71 Aligned_cols=43 Identities=26% Similarity=0.225 Sum_probs=27.1
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
|++++|.|..++.+..+ ..+...+.-...+.|+++|.||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999988643321 12222211111268999999999984
No 375
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=96.09 E-value=0.0046 Score=46.06 Aligned_cols=49 Identities=45% Similarity=0.799 Sum_probs=41.1
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~ 53 (208)
..++..+.+.+|||+|+++|+...+.++.+..++...+......+|..-
T Consensus 43 ~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~ 91 (176)
T cd04133 43 SVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENV 91 (176)
T ss_pred EECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHH
Confidence 4567889999999999999999999999999998887766556677653
No 376
>KOG0464|consensus
Probab=95.94 E-value=0.0028 Score=52.79 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=63.5
Q ss_pred ccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy2518 59 KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNK 138 (208)
Q Consensus 59 ~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK 138 (208)
|+.+.+-.+.++=+..++++.||+|+-.|+-....+++--|+++.|||.+..-.-+.+--|...-+. +.|-.+..||
T Consensus 87 gitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~---~ip~~~fink 163 (753)
T KOG0464|consen 87 GITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF---KIPAHCFINK 163 (753)
T ss_pred CceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc---CCchhhhhhh
Confidence 4455677777777788899999999999998899999999999999999876555555556543222 6888888999
Q ss_pred CCC
Q psy2518 139 IDL 141 (208)
Q Consensus 139 ~Dl 141 (208)
.|.
T Consensus 164 mdk 166 (753)
T KOG0464|consen 164 MDK 166 (753)
T ss_pred hhh
Confidence 996
No 377
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=95.82 E-value=0.005 Score=46.15 Aligned_cols=48 Identities=23% Similarity=0.524 Sum_probs=38.6
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
...+..+.|.+|||+|+++|+.+...++.|..++...+......+|..
T Consensus 47 ~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~ 94 (182)
T cd04172 47 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDS 94 (182)
T ss_pred EECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHH
Confidence 456788999999999999999999999999888877666544555544
No 378
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.79 E-value=0.032 Score=45.75 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=62.5
Q ss_pred CCh-hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC
Q psy2518 82 AGQ-EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG 160 (208)
Q Consensus 82 ~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~ 160 (208)
+|+ ..+.......+..+|+++-|.|+-++.+..+ ..+.+...+.|.++|.||+||.... +..+=.+.+.++.+
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k~~i~vlNK~DL~~~~-~~~~W~~~~~~~~~ 91 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEKPKLLVLNKADLAPKE-VTKKWKKYFKKEEG 91 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccCCcEEEEehhhcCCHH-HHHHHHHHHHhcCC
Confidence 554 5666677788999999999999999876543 3344444466779999999995422 22222233333335
Q ss_pred CeEEEEecCCCCCHHHHHH
Q psy2518 161 CRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 161 ~~~~e~Sa~~~~~i~~~f~ 179 (208)
...+.++++.+.+...+..
T Consensus 92 ~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 92 IKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred CccEEEEeecccCccchHH
Confidence 5678899998887776664
No 379
>KOG4252|consensus
Probab=95.77 E-value=0.00029 Score=51.91 Aligned_cols=46 Identities=80% Similarity=1.135 Sum_probs=37.0
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccc
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~ 53 (208)
+.-+++|+||+|||++|+..-|.++.|..++...|...-..+|+..
T Consensus 66 ~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~ 111 (246)
T KOG4252|consen 66 IEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEAT 111 (246)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHH
Confidence 3456789999999999999999999999999876655445566543
No 380
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=95.76 E-value=0.18 Score=37.29 Aligned_cols=88 Identities=11% Similarity=0.086 Sum_probs=63.6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
..|.|+|++|++..-|++.+..=+..+.-...--.+.++++-....+.-.+...+..+++.+++++++.+.-....+...
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~ 143 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS 143 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence 57999999999999999887665555443333344566666666555577889999999999999999887777655444
Q ss_pred HHHHHHHH
Q psy2518 177 IFRYLTTK 184 (208)
Q Consensus 177 ~f~~i~~~ 184 (208)
+=+.+++.
T Consensus 144 lAqRLL~~ 151 (176)
T PF11111_consen 144 LAQRLLRM 151 (176)
T ss_pred HHHHHHHH
Confidence 44444433
No 381
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.65 E-value=0.0088 Score=44.58 Aligned_cols=48 Identities=23% Similarity=0.536 Sum_probs=38.3
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
.+++..+.|.+|||+|+++|+.....++.|..++...+......+|..
T Consensus 43 ~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~ 90 (178)
T cd04131 43 EIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDS 90 (178)
T ss_pred EECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHH
Confidence 356788999999999999999998888888888877666544555554
No 382
>KOG0085|consensus
Probab=95.55 E-value=0.025 Score=43.76 Aligned_cols=124 Identities=13% Similarity=0.093 Sum_probs=77.8
Q ss_pred EEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhcC--CCCEE
Q psy2518 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD----------SFEAAHSWKMKVENECG--EIPTV 133 (208)
Q Consensus 66 ~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~pii 133 (208)
++.++-+++.+.+.|.+|+..-+.-|-.++.+...++++..++.-+ ..++....+..+..+.= +.++|
T Consensus 191 eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVI 270 (359)
T KOG0085|consen 191 EYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 270 (359)
T ss_pred ecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceE
Confidence 3345567788999999999776666777777766666665554322 12222223333332211 78999
Q ss_pred EEEeCCCCCCC----------------CCCCHHHHHHHHHHh----C-----C-eEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518 134 LVQNKIDLLDQ----------------SVVAPEEADLLSRAL----G-----C-RLMRTSVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 134 vvgnK~Dl~~~----------------~~v~~~~~~~~~~~~----~-----~-~~~e~Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
+..||.|+.++ .+-..+.++++..++ + + --..++|.+-.||.-+|..+...++.
T Consensus 271 lFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 271 LFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred EEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 99999998543 112233444444332 1 1 22578899999999999999888876
Q ss_pred Hh
Q psy2518 188 EL 189 (208)
Q Consensus 188 ~~ 189 (208)
..
T Consensus 351 ~~ 352 (359)
T KOG0085|consen 351 LN 352 (359)
T ss_pred hh
Confidence 43
No 383
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=95.53 E-value=0.0065 Score=45.73 Aligned_cols=48 Identities=40% Similarity=0.691 Sum_probs=39.0
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~ 53 (208)
+++..+.+.+||++||++|+.+.+.++.+..++...+......+|..-
T Consensus 46 ~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~ 93 (191)
T cd01875 46 VDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENV 93 (191)
T ss_pred ECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHH
Confidence 567789999999999999999999999998888876665555556543
No 384
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=95.52 E-value=0.11 Score=43.07 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=50.3
Q ss_pred eeeEEEecCceEEE--EEEeeecCccc-cccc-cccccceeeEEEE----------EC----CeEEEEEEEeCCChh---
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFE-AAHS-WKMKVSIKRTIKE----------CE----GEEVRLMLWDTAGQE--- 85 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~-~t~~~~~~~~~~~----------~~----~~~~~l~i~Dt~g~~--- 85 (208)
.+++-+||..++|| +|+......-. .+|+ .||....-...+. +. -.+..+++.|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47889999999999 35554444433 3444 3332221111110 01 134578999998863
Q ss_pred -hhcchhHhh---hcCCcEEEEEEeCC
Q psy2518 86 -EFDAITKAY---YRGAQACVITFSTI 108 (208)
Q Consensus 86 -~~~~~~~~~---~~~~d~ii~v~d~~ 108 (208)
.-+.+...| ++.+|+++.|+|..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 444566666 57899999999986
No 385
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=95.40 E-value=0.0054 Score=46.80 Aligned_cols=48 Identities=40% Similarity=0.877 Sum_probs=39.3
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
.+++..+.+.+||++|+++|+.....++.|..++...+......+|..
T Consensus 43 ~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~ 90 (202)
T cd04120 43 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD 90 (202)
T ss_pred EECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHH
Confidence 446778999999999999999999999999999887666555556654
No 386
>KOG1424|consensus
Probab=95.32 E-value=0.084 Score=45.34 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=50.3
Q ss_pred hhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH---hCCeEEEEec
Q psy2518 94 YYRGAQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA---LGCRLMRTSV 168 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~---~~~~~~e~Sa 168 (208)
.+..+|+++.++|+-++--|.. +..+.... .+....+++.||+|| .+.+....|+.- .+++++.-||
T Consensus 171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~---d~~K~~~LLvNKaDL-----l~~~qr~aWa~YF~~~ni~~vf~SA 242 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEV---DPSKANVLLVNKADL-----LPPEQRVAWAEYFRQNNIPVVFFSA 242 (562)
T ss_pred HHhhcceEEEEeecCCccccCChhHHHHHhcc---ccccceEEEEehhhc-----CCHHHHHHHHHHHHhcCceEEEEec
Confidence 5678999999999999866543 33333333 335778999999999 456666777553 4678999999
Q ss_pred CC
Q psy2518 169 KE 170 (208)
Q Consensus 169 ~~ 170 (208)
..
T Consensus 243 ~~ 244 (562)
T KOG1424|consen 243 LA 244 (562)
T ss_pred cc
Confidence 87
No 387
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.99 E-value=0.011 Score=46.24 Aligned_cols=48 Identities=25% Similarity=0.532 Sum_probs=39.8
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
...+..+.|.+|||+|+++|......++.|..++...+......+|..
T Consensus 55 ~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~ 102 (232)
T cd04174 55 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDS 102 (232)
T ss_pred EECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHH
Confidence 456888999999999999999988889999998887776655666654
No 388
>KOG2486|consensus
Probab=94.92 E-value=0.014 Score=46.30 Aligned_cols=151 Identities=11% Similarity=0.019 Sum_probs=77.8
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccc-cccccccceeeEEEEECCeEEEEEEEeCCC----------hhhhcchh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAA-HSWKMKVSIKRTIKECEGEEVRLMLWDTAG----------QEEFDAIT 91 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g----------~~~~~~~~ 91 (208)
+....+.++|-+++|| +++-+........ ..++-| + .+.++.-...-.+.+.|.+| ...+..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g-~--Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNG-K--TQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCc-c--ceeeeeeeccceEEEEecCCcccccCCccCcchHhHhH
Confidence 5678899999999999 3332222222222 222333 1 12222212222467788888 13334444
Q ss_pred HhhhcC---CcEEEEEEeCCChh-hHHH-HHHHHHHHHhhcCCCCEEEEEeCCCCCCC------CCCCHHH-----HHHH
Q psy2518 92 KAYYRG---AQACVITFSTIDRD-SFEA-AHSWKMKVENECGEIPTVLVQNKIDLLDQ------SVVAPEE-----ADLL 155 (208)
Q Consensus 92 ~~~~~~---~d~ii~v~d~~~~~-s~~~-~~~~~~~~~~~~~~~piivvgnK~Dl~~~------~~v~~~~-----~~~~ 155 (208)
..|+.. --.+.+..|.+-+- ..++ ...|+.+ .+.|+.+|.||+|.... ++..... ..+.
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-----~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-----NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-----cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 555433 22334445554331 1111 1233322 17999999999996321 1111111 1111
Q ss_pred HHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 156 SRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 156 ~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
+.....+++.+|+.++.|++++.-.+.+
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhh
Confidence 2222347788999999999988776654
No 389
>PTZ00099 rab6; Provisional
Probab=94.80 E-value=0.015 Score=43.35 Aligned_cols=49 Identities=39% Similarity=0.737 Sum_probs=38.6
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~ 53 (208)
...++.+.+.+|||+|+++|+.....++.|..++...+......+|...
T Consensus 23 ~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~ 71 (176)
T PTZ00099 23 YLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT 71 (176)
T ss_pred EECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH
Confidence 4567889999999999999999999999998888776654444455543
No 390
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.73 E-value=0.12 Score=45.14 Aligned_cols=136 Identities=13% Similarity=0.079 Sum_probs=78.9
Q ss_pred eeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 26 AITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
--+-+.++|+.|+|| ++.+.+-..|. ..|+. +..--..-+.|+.-.+.+..++.. ... .-...+-||.+++.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~t---k~ti~-~i~GPiTvvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVlLl 140 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFT---KQTID-EIRGPITVVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVLLL 140 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHH---Hhhhh-ccCCceEEeecceeEEEEEeChHH--HHH-HHhHHHhhheeEEE
Confidence 346678999999999 44443334332 22332 222222235788889999999832 222 23456789999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH------HHHH-hCCeEEEEecCCC
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL------LSRA-LGCRLMRTSVKED 171 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~------~~~~-~~~~~~e~Sa~~~ 171 (208)
.|.+-.-..+. -++++ +....+-+.++.|.+..|+-... .+-..+.. |-.- .|+++|..|...+
T Consensus 141 IdgnfGfEMET-mEFLn-il~~HGmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 141 IDGNFGFEMET-MEFLN-ILISHGMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred eccccCceehH-HHHHH-HHhhcCCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 99875432222 23333 33344456678889999995532 22222221 1111 2678888887654
No 391
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.63 E-value=0.15 Score=36.23 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=46.2
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL 141 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl 141 (208)
+.+.++|+++.. .......+..+|.++++.+.+ ..++..+...++.+.+.....++.+|.|+++.
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 678999998743 233456788999999999987 45666555555555444445678899999974
No 392
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=94.56 E-value=0.013 Score=44.18 Aligned_cols=49 Identities=39% Similarity=0.756 Sum_probs=39.9
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~ 53 (208)
.+++..+.|.+||++|+++|+.+...++.|..++...+......+|..-
T Consensus 49 ~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~ 97 (189)
T cd04121 49 LLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI 97 (189)
T ss_pred EECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 3467789999999999999999999888899988887765556666654
No 393
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.54 E-value=0.26 Score=39.74 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=59.4
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH--
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE-- 151 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~-- 151 (208)
+.+.|.+|.|--... -....-+|.+++|-=..-.+..+-++. .+. ..-=++|.||.|.......-.+.
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~---Gim----EiaDi~vINKaD~~~A~~a~r~l~~ 213 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA---GIM----EIADIIVINKADRKGAEKAARELRS 213 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh---hhh----hhhheeeEeccChhhHHHHHHHHHH
Confidence 445666665532111 112345788888876655555554433 222 23457889999963311100111
Q ss_pred HHHHHH----HhC--CeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518 152 ADLLSR----ALG--CRLMRTSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 152 ~~~~~~----~~~--~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
+..+.. ..+ -+++.+||.+|.|++++++.+.+.....
T Consensus 214 al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 214 ALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred HHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 111111 112 3789999999999999999988765433
No 394
>KOG1954|consensus
Probab=94.49 E-value=0.11 Score=42.96 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=44.9
Q ss_pred EEEEEeCCChhh-----------hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 75 RLMLWDTAGQEE-----------FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 75 ~l~i~Dt~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
.+.|.||+|.-. |.....=|...+|.|+++||....+--++....+..++.+ .-.+-||.||.|..
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--EdkiRVVLNKADqV 224 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDKIRVVLNKADQV 224 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cceeEEEecccccc
Confidence 378999999422 2333445678999999999987655444445555555554 45567778999963
No 395
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=94.38 E-value=0.027 Score=41.69 Aligned_cols=48 Identities=40% Similarity=0.715 Sum_probs=36.3
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
.+++..+.|.+||++|+++|....+.++.+..++...+......+|..
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~ 90 (174)
T cd01871 43 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 90 (174)
T ss_pred EECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHH
Confidence 456788999999999999999888888888777776555433444443
No 396
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.31 E-value=0.42 Score=37.22 Aligned_cols=76 Identities=25% Similarity=0.330 Sum_probs=48.5
Q ss_pred EEEEEeC-CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHH
Q psy2518 75 RLMLWDT-AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153 (208)
Q Consensus 75 ~l~i~Dt-~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~ 153 (208)
.+-+.|| +|.|.|. +...+++|.+|.|.|.+ ..|+....+. .++.+...=.++.+|.||.|-. ++...
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS-~~sl~taeri-~~L~~elg~k~i~~V~NKv~e~------e~~~~ 203 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPS-YKSLRTAERI-KELAEELGIKRIFVVLNKVDEE------EELLR 203 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCc-HHHHHHHHHH-HHHHHHhCCceEEEEEeeccch------hHHHH
Confidence 4567887 6777664 45668999999999988 4466554442 2232222237899999999942 33444
Q ss_pred HHHHHhCC
Q psy2518 154 LLSRALGC 161 (208)
Q Consensus 154 ~~~~~~~~ 161 (208)
..+...+.
T Consensus 204 ~~~~~~~~ 211 (255)
T COG3640 204 ELAEELGL 211 (255)
T ss_pred hhhhccCC
Confidence 45555554
No 397
>KOG3859|consensus
Probab=94.30 E-value=0.095 Score=41.78 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=36.5
Q ss_pred eeeEEEecCceEEEE--EEeeecCcccc----ccccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518 27 ITKAYYRGAQACVIT--FSTIDRDSFEA----AHSWKMKVSIKRTIKECEGEEVRLMLWDTAG 83 (208)
Q Consensus 27 ~~ki~~vG~s~~gk~--~~~~~~~~f~~----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g 83 (208)
.|+|+.+|.+|.||+ +..+++-.|.. ...|++........+.-.+..+++.|.||.|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 589999999999992 23333344443 3345554333333333357788999999988
No 398
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.26 E-value=0.043 Score=43.29 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=49.4
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-------CCeEEEEe
Q psy2518 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-------GCRLMRTS 167 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~e~S 167 (208)
..-+|.+++|....-.+..+-++.= +. ..+=++|.||+|+...+. ...+.+...... .-+++.||
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~KaG---im----EiaDi~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~ts 211 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAIKAG---IM----EIADIFVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTS 211 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB-TT---HH----HH-SEEEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred HHhcCeEEEEecCCCccHHHHHhhh---hh----hhccEEEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEE
Confidence 4568999999988776665544321 22 234578899999633111 111222222111 13899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy2518 168 VKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~~ 185 (208)
|.++.|++++++.+.+.-
T Consensus 212 A~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 212 ALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHH
Confidence 999999999999887753
No 399
>KOG0469|consensus
Probab=94.23 E-value=0.067 Score=45.98 Aligned_cols=69 Identities=20% Similarity=0.347 Sum_probs=51.6
Q ss_pred CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL 141 (208)
Q Consensus 70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl 141 (208)
++..+.+++.|.||+-.|.+.....++-.|++++|+|.-+.-..+.---..+.+.+ .+..+++.||.|.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E---RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE---RIKPVLVMNKMDR 162 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh---hccceEEeehhhH
Confidence 45678899999999999999999999999999999999876544321111122222 4666788999994
No 400
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=94.11 E-value=0.037 Score=40.98 Aligned_cols=47 Identities=36% Similarity=0.596 Sum_probs=36.2
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
+.+..+.|.+||++|+++|....+.++.+..++...+......+|..
T Consensus 44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~ 90 (175)
T cd01874 44 IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFEN 90 (175)
T ss_pred ECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHH
Confidence 45677899999999999999888888888888776665444445543
No 401
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=93.85 E-value=0.027 Score=43.67 Aligned_cols=48 Identities=21% Similarity=0.504 Sum_probs=38.9
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
.++++.+.|.+||++|++.|+.....++.+..++...|......+|..
T Consensus 43 ~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~ 90 (222)
T cd04173 43 EIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDS 90 (222)
T ss_pred EECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHH
Confidence 467889999999999999999998888888888877666555555554
No 402
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=93.71 E-value=0.019 Score=43.82 Aligned_cols=49 Identities=18% Similarity=0.481 Sum_probs=40.1
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccc
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~ 56 (208)
+..+.|.+||++|+++|......++.|..++...+......+|..-..|
T Consensus 51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W 99 (202)
T cd04102 51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRW 99 (202)
T ss_pred CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHH
Confidence 5678999999999999999999999999998887766556666654444
No 403
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=93.59 E-value=0.029 Score=42.75 Aligned_cols=47 Identities=32% Similarity=0.663 Sum_probs=36.8
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~ 51 (208)
..+++.+.|++||++|+++|+.+...++.|..++...+......+|.
T Consensus 38 ~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~ 84 (200)
T smart00176 38 HTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYK 84 (200)
T ss_pred EECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHH
Confidence 34677899999999999999999888899988887665544444454
No 404
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.39 E-value=1.1 Score=35.60 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=57.4
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHH
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~ 153 (208)
..+.|.|++.--. ...-..+.++|.+++|--.| +..+.+++..++...+. +.|..+|.||.++.. + +.+
T Consensus 164 ~~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f--~ip~~iViNr~~~g~----s--~ie 232 (284)
T COG1149 164 ADLLIIDSAAGTG--CPVIASLKGADLAILVTEPT-PFGLHDLKRALELVEHF--GIPTGIVINRYNLGD----S--EIE 232 (284)
T ss_pred cceeEEecCCCCC--ChHHHhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh--CCceEEEEecCCCCc----h--HHH
Confidence 5678888853111 12334578999999998887 66777777766666555 799999999997522 2 778
Q ss_pred HHHHHhCCeEE
Q psy2518 154 LLSRALGCRLM 164 (208)
Q Consensus 154 ~~~~~~~~~~~ 164 (208)
+++++.+++++
T Consensus 233 ~~~~e~gi~il 243 (284)
T COG1149 233 EYCEEEGIPIL 243 (284)
T ss_pred HHHHHcCCCee
Confidence 89999887654
No 405
>KOG2484|consensus
Probab=93.30 E-value=0.3 Score=40.78 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=52.4
Q ss_pred EEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH
Q psy2518 77 MLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL 154 (208)
Q Consensus 77 ~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~ 154 (208)
..|+-.....|....+..+..+|+||-|.|.-||.+-.. +..| +.+..++...|+|.||.|| |+.+..+.
T Consensus 126 ~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~---V~~~~gnKkLILVLNK~DL-----VPrEv~e~ 197 (435)
T KOG2484|consen 126 ALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEA---VLQAHGNKKLILVLNKIDL-----VPREVVEK 197 (435)
T ss_pred hccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHH---HHhccCCceEEEEeehhcc-----CCHHHHHH
Confidence 344444445566666667888999999999999986543 3333 3333446889999999999 66777777
Q ss_pred HHHHh
Q psy2518 155 LSRAL 159 (208)
Q Consensus 155 ~~~~~ 159 (208)
|..-+
T Consensus 198 Wl~YL 202 (435)
T KOG2484|consen 198 WLVYL 202 (435)
T ss_pred HHHHH
Confidence 76543
No 406
>KOG0460|consensus
Probab=93.23 E-value=0.53 Score=38.72 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=61.9
Q ss_pred ccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy2518 59 KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNK 138 (208)
Q Consensus 59 ~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK 138 (208)
|+.+..-.+.+.-..-.+-=.||||+-.|-...-.-...-|++|+|+..+|..=-+. ++.+- +.+.-+-..+++..||
T Consensus 102 GITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQT-rEHlL-LArQVGV~~ivvfiNK 179 (449)
T KOG0460|consen 102 GITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQT-REHLL-LARQVGVKHIVVFINK 179 (449)
T ss_pred cceEeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcch-HHHHH-HHHHcCCceEEEEEec
Confidence 333334444454445556678999998875533333456799999999998542221 22221 2222223557778899
Q ss_pred CCCCCCCC---CCHHHHHHHHHHhC-----CeEEEEecC
Q psy2518 139 IDLLDQSV---VAPEEADLLSRALG-----CRLMRTSVK 169 (208)
Q Consensus 139 ~Dl~~~~~---v~~~~~~~~~~~~~-----~~~~e~Sa~ 169 (208)
.|+.++.+ .-+=+.+++..++| ++++.-||.
T Consensus 180 vD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 180 VDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence 99864221 11223445556665 477876654
No 407
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=93.02 E-value=2.5 Score=36.03 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=46.1
Q ss_pred hhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC--CCHHHHHHHHH
Q psy2518 110 RDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED--INVNSIFRYLT 182 (208)
Q Consensus 110 ~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~--~~i~~~f~~i~ 182 (208)
+++|... .+-..+++.. +.|++++.|-.+-. ..-+.+.+.++..+++.+++.+++..- ..|..++..++
T Consensus 162 Re~Y~eAEervI~ELk~i--gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 162 RENYVEAEERVIEELKEI--GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred hHHHHHHHHHHHHHHHHh--CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 4455444 4455666665 78999999988742 334567778888899999988887654 34545544444
No 408
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=92.86 E-value=0.046 Score=43.77 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=33.3
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ 84 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~ 84 (208)
..++++++|.+++|| +++++........ .+..|.......+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 458899999999999 3455544433221 22223233334444433 4689999997
No 409
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=92.84 E-value=0.11 Score=40.37 Aligned_cols=85 Identities=11% Similarity=0.041 Sum_probs=51.2
Q ss_pred eeeEEEecCceEEE--EEEeeecC--ccccc---cccccccceeeEEEEECCeEEEEEEEeCCChhhhcc------hhHh
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRD--SFEAA---HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA------ITKA 93 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~--~f~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------~~~~ 93 (208)
..-|.++|..++|| +++.+... .|... ...|.|+-........ +....+.+.||+|...... ....
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence 45578899999999 45666666 66532 3455554444333322 3456799999999753322 1222
Q ss_pred hhcC--CcEEEEEEeCCChhh
Q psy2518 94 YYRG--AQACVITFSTIDRDS 112 (208)
Q Consensus 94 ~~~~--~d~ii~v~d~~~~~s 112 (208)
.+.. ++++|+..+.+....
T Consensus 86 ~l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 86 ALATLLSSVLIYNSWETILGD 106 (224)
T ss_pred HHHHHHhCEEEEeccCcccHH
Confidence 2333 788888777665443
No 410
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=92.69 E-value=0.058 Score=39.15 Aligned_cols=54 Identities=11% Similarity=-0.036 Sum_probs=30.0
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG 83 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g 83 (208)
..+.++++|.+++|| +++.+...... ...++-|.......+..+. .+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVC-KVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCce-eeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 356789999999999 34554443322 2222333222222233322 267999998
No 411
>PHA02518 ParA-like protein; Provisional
Probab=92.67 E-value=0.91 Score=34.30 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=42.4
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHH---HHHHHHHHHHhhcCCCC-EEEEEeCCCC
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE---AAHSWKMKVENECGEIP-TVLVQNKIDL 141 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~~~~~~~~~p-iivvgnK~Dl 141 (208)
..+.+.|+||++.. .......+..+|.+|++...+. .++. .+..++.......+..| ..++.|+.+.
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSP-FDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCCh-hhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 34678999999863 3456677889999999998874 3333 34444444333222344 4566787653
No 412
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=92.66 E-value=0.058 Score=40.27 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=35.3
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
..+..+.|.+||++|+++|......++.+..++...+......+|..
T Consensus 44 ~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~ 90 (182)
T cd04128 44 IRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNS 90 (182)
T ss_pred ECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHH
Confidence 45778999999999999999988888888777776555433344433
No 413
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=92.61 E-value=0.032 Score=41.90 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=28.9
Q ss_pred eeEEEecCceEEE--EEEeeecCcccc-------ccccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEA-------AHSWKMKVSIKRTIKECEGEEVRLMLWDTAG 83 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g 83 (208)
..++++|.+++|| +++.+....... ...+..|.......+.++. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 5799999999999 344444332111 1111112222233333332 478999998
No 414
>KOG0448|consensus
Probab=92.60 E-value=0.9 Score=40.61 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=54.5
Q ss_pred EEEEeCCChh---hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHH
Q psy2518 76 LMLWDTAGQE---EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA 152 (208)
Q Consensus 76 l~i~Dt~g~~---~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~ 152 (208)
+.+.|.||.+ ...+-.-.+..++|++++|....+...... .+++....+. .+-+.++-||+|.....+-+.+++
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~--KpniFIlnnkwDasase~ec~e~V 284 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE--KPNIFILNNKWDASASEPECKEDV 284 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc--CCcEEEEechhhhhcccHHHHHHH
Confidence 4566777753 233334566789999999998887655443 3344443332 445677778999865444444444
Q ss_pred HHHHHHhC--------CeEEEEecCC
Q psy2518 153 DLLSRALG--------CRLMRTSVKE 170 (208)
Q Consensus 153 ~~~~~~~~--------~~~~e~Sa~~ 170 (208)
..-..+++ =.+|.+||+.
T Consensus 285 ~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 285 LKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHhcCcccHhhhcCeeEEEeccc
Confidence 33322221 2578899664
No 415
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=92.57 E-value=0.049 Score=40.45 Aligned_cols=55 Identities=11% Similarity=0.043 Sum_probs=32.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG 83 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g 83 (208)
...++++++|..++|| +++++....- ....+..|.......+.++. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 3347999999999999 3444443322 12223333333333334432 478999998
No 416
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=92.49 E-value=0.12 Score=38.64 Aligned_cols=46 Identities=41% Similarity=0.705 Sum_probs=35.3
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~ 51 (208)
.++..+.+.+||++|++.|....+.++.+..++...+......+|.
T Consensus 43 ~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~ 88 (189)
T cd04134 43 VDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLE 88 (189)
T ss_pred ECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHH
Confidence 4567789999999999999988888887877777655544445554
No 417
>PLN00023 GTP-binding protein; Provisional
Probab=92.45 E-value=0.062 Score=43.98 Aligned_cols=44 Identities=16% Similarity=0.415 Sum_probs=35.0
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~ 51 (208)
+..+.+.+||++|+++|+.....++.+..++...+......+|.
T Consensus 80 ~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFe 123 (334)
T PLN00023 80 ERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKT 123 (334)
T ss_pred CceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHH
Confidence 35688999999999999999999999988887766544444454
No 418
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=92.34 E-value=0.12 Score=37.86 Aligned_cols=46 Identities=39% Similarity=0.717 Sum_probs=32.8
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF 50 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f 50 (208)
..++..+.+.+||++|+++|....+.++.+..++...+......+|
T Consensus 42 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf 87 (173)
T cd04130 42 LVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSF 87 (173)
T ss_pred EECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHH
Confidence 3556778999999999999988887777777766654443333334
No 419
>KOG1673|consensus
Probab=92.30 E-value=0.18 Score=36.65 Aligned_cols=111 Identities=16% Similarity=0.226 Sum_probs=58.7
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc---cccccccccceeeEEEEECCeEEEEEEEeCC
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE---AAHSWKMKVSIKRTIKECEGEEVRLMLWDTA 82 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~---~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 82 (208)
..|..++.-+||+.|++++...+.|...+..+..-.|.-......+ +=|....|..-....+-+ |.++. .+.|.+
T Consensus 64 i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilv-GTKyD-~fi~lp 141 (205)
T KOG1673|consen 64 IRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILV-GTKYD-LFIDLP 141 (205)
T ss_pred ecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEe-ccchH-hhhcCC
Confidence 4577888899999999999999999998887766533211111111 112222221111111111 11111 122333
Q ss_pred C--hhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHH
Q psy2518 83 G--QEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS 118 (208)
Q Consensus 83 g--~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 118 (208)
. |+...+..+.|.+--++-++..+.+.--..+.+.+
T Consensus 142 ~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK 179 (205)
T KOG1673|consen 142 PELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFK 179 (205)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHH
Confidence 2 33444445556666666677777666555555543
No 420
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=92.22 E-value=0.068 Score=43.08 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=33.6
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE 85 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 85 (208)
..++++++|..++|| +++.+....... ..++.|+......+.+++ .+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 468899999999999 345444433221 122333333333444443 37899999973
No 421
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=92.17 E-value=0.13 Score=38.94 Aligned_cols=46 Identities=26% Similarity=0.484 Sum_probs=30.6
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
..+|..+.|.+|||||++++ ....++.+..++...+......+|..
T Consensus 60 ~~~~~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~ 105 (195)
T cd01873 60 VVDGVSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRN 105 (195)
T ss_pred eeCCEEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHH
Confidence 45788999999999999863 33456666666665555444444543
No 422
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=92.16 E-value=2.4 Score=30.95 Aligned_cols=84 Identities=17% Similarity=0.081 Sum_probs=52.3
Q ss_pred EEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH
Q psy2518 75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL 154 (208)
Q Consensus 75 ~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~ 154 (208)
.+.|+||++.... .....+..+|.++++.+.+. .++..+..++..+.+. +.....++.|+++... ....+....
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~--~~~~~~~~~ 137 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDM--VEGGDMVED 137 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc-CCceEEEEEeCCcccc--cchhhHHHH
Confidence 6899999875332 23455688999999998774 4566666665555542 2345678899998532 222222344
Q ss_pred HHHHhCCeEE
Q psy2518 155 LSRALGCRLM 164 (208)
Q Consensus 155 ~~~~~~~~~~ 164 (208)
+.+.++.+++
T Consensus 138 ~~~~~~~~v~ 147 (179)
T cd02036 138 IEEILGVPLL 147 (179)
T ss_pred HHHHhCCCEE
Confidence 5555676554
No 423
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=92.11 E-value=0.12 Score=34.54 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=32.7
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHH
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 121 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 121 (208)
+.+.+.|+++.... .....+..+|.++++.+.+ ..++..+..+++
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 67899999886432 2336677899999999876 567777766655
No 424
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=91.81 E-value=0.075 Score=38.28 Aligned_cols=38 Identities=34% Similarity=0.651 Sum_probs=30.0
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
.++..+.+.+||++|+++|+.....++.+..++...+.
T Consensus 44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 44 VDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred ECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 45677889999999999998887777777777665444
No 425
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=91.53 E-value=0.11 Score=40.04 Aligned_cols=46 Identities=33% Similarity=0.679 Sum_probs=35.1
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~ 51 (208)
.++..+.+.+||++|+++|....+.++.+..++...+......+|.
T Consensus 57 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~ 102 (219)
T PLN03071 57 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 102 (219)
T ss_pred ECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHH
Confidence 3566789999999999999988888888888877655544344443
No 426
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=91.44 E-value=4.3 Score=30.04 Aligned_cols=85 Identities=19% Similarity=0.265 Sum_probs=60.3
Q ss_pred hcCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q psy2518 95 YRGAQACVITFSTIDRD-------SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS 167 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 167 (208)
++...+=.+++|.+|-- -..++..|+.++++..+...++||.|-.=..+ ....++++.+.+.+|++++.-+
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEeC
Confidence 55566667888877631 23567889999988755445888888753311 3457889999999999999888
Q ss_pred cCCCCCHHHHHHHH
Q psy2518 168 VKEDINVNSIFRYL 181 (208)
Q Consensus 168 a~~~~~i~~~f~~i 181 (208)
++.-.+..++...+
T Consensus 114 ~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 114 AKKPGCFREILKYF 127 (168)
T ss_pred CCCCccHHHHHHHH
Confidence 87776666665544
No 427
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=91.37 E-value=0.097 Score=38.57 Aligned_cols=48 Identities=38% Similarity=0.587 Sum_probs=36.8
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
..++..+.+.+||++|+++|+.....++.|..++...+......+|..
T Consensus 44 ~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~ 91 (172)
T cd04141 44 RIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQE 91 (172)
T ss_pred EECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHH
Confidence 346777899999999999999998888888888776555444445544
No 428
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=91.33 E-value=0.083 Score=38.20 Aligned_cols=39 Identities=26% Similarity=0.515 Sum_probs=30.4
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 44 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~ 44 (208)
.++..+.+++||++|+++|..+...++.+..++.-.+..
T Consensus 44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~ 82 (163)
T cd04176 44 VDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSL 82 (163)
T ss_pred ECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEEC
Confidence 356677899999999999999888887777776654443
No 429
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=91.30 E-value=0.062 Score=38.93 Aligned_cols=38 Identities=34% Similarity=0.656 Sum_probs=31.4
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
.++..+.+.+||++|+++|....+.++.|..++...+.
T Consensus 44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T cd04175 44 VDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYS 81 (164)
T ss_pred ECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEE
Confidence 45677889999999999999999888888887765544
No 430
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=91.23 E-value=0.16 Score=37.05 Aligned_cols=39 Identities=41% Similarity=0.753 Sum_probs=30.0
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 44 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~ 44 (208)
..+..+.+.+||++|+++|....+..+-+..++...+..
T Consensus 41 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 41 VDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred ECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 456778899999999999988888777776666655443
No 431
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=90.90 E-value=0.1 Score=37.87 Aligned_cols=46 Identities=41% Similarity=0.820 Sum_probs=33.0
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~ 51 (208)
+++..+.+.+||++|+++|....+.++.+..++...+......+|.
T Consensus 44 ~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~ 89 (161)
T cd04117 44 VDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQ 89 (161)
T ss_pred ECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHH
Confidence 4567789999999999999888887777777766544433333443
No 432
>PRK13695 putative NTPase; Provisional
Probab=90.83 E-value=1.5 Score=32.21 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=31.4
Q ss_pred CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 129 ~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
..|++++.+|... ......+....+..++++ +.+|-+++.+.+++.+
T Consensus 126 ~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 126 EKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred CCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence 6899999998543 123344555556677777 5566778888887754
No 433
>PTZ00369 Ras-like protein; Provisional
Probab=90.69 E-value=0.1 Score=39.02 Aligned_cols=45 Identities=38% Similarity=0.576 Sum_probs=33.4
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF 50 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f 50 (208)
.++..+.+.+|||+|+++|......++.+..++...+......+|
T Consensus 48 ~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~ 92 (189)
T PTZ00369 48 IDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSF 92 (189)
T ss_pred ECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHH
Confidence 456778899999999999999888888777777665543333333
No 434
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=90.64 E-value=0.089 Score=38.27 Aligned_cols=40 Identities=43% Similarity=0.952 Sum_probs=30.9
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 44 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~ 44 (208)
..++..+.+.+||++|+++|....+-++.+..++...+..
T Consensus 45 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~ 84 (166)
T cd04122 45 EVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDI 84 (166)
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEEC
Confidence 3567788999999999999988877777777776655443
No 435
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=90.60 E-value=0.12 Score=38.33 Aligned_cols=43 Identities=35% Similarity=0.652 Sum_probs=31.5
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcc
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF 50 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f 50 (208)
+..+.+.+||++|+++|.......+.+..++.-.+......+|
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~ 88 (187)
T cd04132 46 GKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSL 88 (187)
T ss_pred CcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHH
Confidence 6678999999999999988877777777777655543333333
No 436
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=90.54 E-value=0.11 Score=39.34 Aligned_cols=45 Identities=49% Similarity=0.885 Sum_probs=35.2
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
+..+.+.+||++|+++|....+.++.+..++...+......+|..
T Consensus 47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~ 91 (201)
T cd04107 47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEA 91 (201)
T ss_pred CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHH
Confidence 678999999999999999998888888888876655433444443
No 437
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=90.50 E-value=0.082 Score=39.59 Aligned_cols=39 Identities=31% Similarity=0.601 Sum_probs=31.7
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 44 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~ 44 (208)
.++..+.+++||++|+++|......++.+..++...+..
T Consensus 42 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 42 VDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred ECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 456778899999999999998888888888877765543
No 438
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=90.46 E-value=0.13 Score=37.55 Aligned_cols=38 Identities=45% Similarity=1.017 Sum_probs=30.0
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
.+++.+.+.+||++|+++|......++.+..++...+.
T Consensus 49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (170)
T cd04116 49 VDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFA 86 (170)
T ss_pred ECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEE
Confidence 46788899999999999998887777777766654443
No 439
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=90.08 E-value=3.8 Score=32.68 Aligned_cols=93 Identities=20% Similarity=0.238 Sum_probs=52.0
Q ss_pred cCCcEEEEEEeCCChh-------hHH----HHHHHHHHHHhhcC-CCCEEEEEeCCCCCCC-----CCCCHHHHHHHHHH
Q psy2518 96 RGAQACVITFSTIDRD-------SFE----AAHSWKMKVENECG-EIPTVLVQNKIDLLDQ-----SVVAPEEADLLSRA 158 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~-------s~~----~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~-----~~v~~~~~~~~~~~ 158 (208)
+..||+|+++|+++-- .+. .+..-+.++.+..+ ..|+.+|.||+|+... +..+.++. ..-
T Consensus 24 ~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r---~q~ 100 (266)
T PF14331_consen 24 QPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEER---EQV 100 (266)
T ss_pred CCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHH---hCC
Confidence 4579999999985421 122 22334455555555 8999999999998542 12222221 122
Q ss_pred hCCeEEEEecCCCCC---HHHHHHHHHHHHHHHhhh
Q psy2518 159 LGCRLMRTSVKEDIN---VNSIFRYLTTKCLSELRQ 191 (208)
Q Consensus 159 ~~~~~~e~Sa~~~~~---i~~~f~~i~~~~~~~~~~ 191 (208)
+|+.+=.-....+.. +++.|+.+...+......
T Consensus 101 lG~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 136 (266)
T PF14331_consen 101 LGFTFPYDEDADGDAWAWFDEEFDELVARLNARVLE 136 (266)
T ss_pred cccccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344322222333334 777777777766655433
No 440
>KOG4423|consensus
Probab=89.75 E-value=0.074 Score=39.78 Aligned_cols=51 Identities=41% Similarity=0.766 Sum_probs=41.2
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~ 58 (208)
..+++|.+||.|||++|..+-.+++.-+.+.-..|.......|+....+-.
T Consensus 72 ~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkq 122 (229)
T KOG4423|consen 72 KTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQ 122 (229)
T ss_pred HHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHH
Confidence 356889999999999999999999999888877776666666766655554
No 441
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=89.73 E-value=2.7 Score=36.89 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe--cCCCCCHHHHHHHHHHHHH
Q psy2518 112 SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS--VKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 112 s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S--a~~~~~i~~~f~~i~~~~~ 186 (208)
.+.++.+.++.+++. ..|++|+.||.|...+ -..+..+++|.+.|+++..+. ++-|.|--++-+.+++.+.
T Consensus 357 Gl~NL~RHIenvr~F--GvPvVVAINKFd~DTe--~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 357 GFANLERHIENIRKF--GVPVVVAINKFVTDTD--AEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHHHHHHHc--CCCEEEEEeCCCCCCH--HHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 345666666666554 7999999999997432 234667889999999876443 5556777777777766554
No 442
>KOG2423|consensus
Probab=89.71 E-value=1.6 Score=36.78 Aligned_cols=83 Identities=14% Similarity=0.164 Sum_probs=52.3
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2518 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINV 174 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i 174 (208)
+..+|+++-|.|.-||..-.. ...-..+.+..+...+|.|.||+||.. ..++..=...+++++..--|..|-....|-
T Consensus 211 iDSSDVvvqVlDARDPmGTrc-~~ve~ylkke~phKHli~vLNKvDLVP-twvt~~Wv~~lSkeyPTiAfHAsi~nsfGK 288 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRC-KHVEEYLKKEKPHKHLIYVLNKVDLVP-TWVTAKWVRHLSKEYPTIAFHASINNSFGK 288 (572)
T ss_pred hcccceeEEeeeccCCccccc-HHHHHHHhhcCCcceeEEEeecccccc-HHHHHHHHHHHhhhCcceeeehhhcCccch
Confidence 458999999999998854321 222233455556788999999999933 223333334444555545577786666665
Q ss_pred HHHHH
Q psy2518 175 NSIFR 179 (208)
Q Consensus 175 ~~~f~ 179 (208)
-.+.+
T Consensus 289 galI~ 293 (572)
T KOG2423|consen 289 GALIQ 293 (572)
T ss_pred hHHHH
Confidence 55544
No 443
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=89.61 E-value=4 Score=32.63 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=57.6
Q ss_pred EEEEEEEeCCChhhhcchh----Hh---h-----hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAIT----KA---Y-----YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKID 140 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~----~~---~-----~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~D 140 (208)
.+.+-|.||+|........ .. . -..+|.+++|.|.+-. .+.+.. .....+.. .+--+|.||.|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~-~~~f~~~~--~~~g~IlTKlD 228 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQ-AKVFNEAV--GLTGIILTKLD 228 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHH-HHHHHhhC--CCCEEEEEccC
Confidence 3678999999964322211 11 1 1238999999999753 222221 22222221 24567789999
Q ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 141 LLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 141 l~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
-.. ..-.+...+...+.++..++ +|++++++-..
T Consensus 229 e~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 229 GTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred CCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 633 23344556667788888888 78888776443
No 444
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=89.57 E-value=0.18 Score=36.57 Aligned_cols=37 Identities=43% Similarity=0.956 Sum_probs=27.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
.++..+.+.+||++|+++|......++.+..++...+
T Consensus 44 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 44 FEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred ECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 4567889999999999998877766666665555433
No 445
>KOG0459|consensus
Probab=89.51 E-value=0.95 Score=38.12 Aligned_cols=106 Identities=20% Similarity=0.182 Sum_probs=62.3
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh---hhHHHHHHH--HHHHHhhcCCCCEEEEEeCCCCCCC--CC
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR---DSFEAAHSW--KMKVENECGEIPTVLVQNKIDLLDQ--SV 146 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~--~~~~~~~~~~~piivvgnK~Dl~~~--~~ 146 (208)
-.+.|.|++|+..|....-.-...||..++|.+.--. ..|+.=.+- -..+.+-..-...|++.||.|-+.- +.
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 4688999999988766444446678888888876321 123221010 1112222235678889999996321 11
Q ss_pred C----CHHHHHHHHHHhC------CeEEEEecCCCCCHHHHHH
Q psy2518 147 V----APEEADLLSRALG------CRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 147 v----~~~~~~~~~~~~~------~~~~e~Sa~~~~~i~~~f~ 179 (208)
- ..+....+.+..| ..|+.||..+|.++.+.-.
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1 1122333444333 3689999999999887543
No 446
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=89.33 E-value=0.36 Score=35.21 Aligned_cols=38 Identities=34% Similarity=0.555 Sum_probs=27.4
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
.+++..+.+.+||++|++.|.......+.+..++...+
T Consensus 42 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 42 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred EECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 45667788999999999998877776665555544433
No 447
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=89.19 E-value=0.14 Score=37.74 Aligned_cols=36 Identities=44% Similarity=0.923 Sum_probs=28.4
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
+..+.+.+||++|+++|......++.+..++...+.
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 95 (180)
T cd04127 60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFD 95 (180)
T ss_pred CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEE
Confidence 456889999999999998887777777766665444
No 448
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=89.00 E-value=0.26 Score=35.99 Aligned_cols=39 Identities=38% Similarity=0.823 Sum_probs=29.4
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 44 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~ 44 (208)
.++..+.+.+||++|++++......++.+..++...+..
T Consensus 44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 82 (166)
T cd00877 44 TNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDV 82 (166)
T ss_pred ECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEEC
Confidence 356678999999999999888777777777666554443
No 449
>PLN03110 Rab GTPase; Provisional
Probab=88.94 E-value=0.13 Score=39.58 Aligned_cols=45 Identities=47% Similarity=0.916 Sum_probs=34.7
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF 50 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f 50 (208)
..+..+.+.+||++|+++|......++.+..++...+......+|
T Consensus 56 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 100 (216)
T PLN03110 56 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF 100 (216)
T ss_pred ECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 456778999999999999999999888888887765553333334
No 450
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=88.63 E-value=0.16 Score=37.36 Aligned_cols=38 Identities=55% Similarity=0.925 Sum_probs=29.2
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
+++..+.+.+||++|+++|......++.+..++...+.
T Consensus 44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 44 ILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred ECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 45777899999999999988877777777666655443
No 451
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=88.54 E-value=0.2 Score=39.48 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=34.6
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~ 51 (208)
.+++..+.|.+||++|+++|......++.+..++...|......+|.
T Consensus 42 ~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~ 88 (247)
T cd04143 42 SIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFE 88 (247)
T ss_pred EECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHH
Confidence 45677889999999999999888777777777766555543344444
No 452
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=88.40 E-value=0.4 Score=34.24 Aligned_cols=38 Identities=37% Similarity=0.625 Sum_probs=28.8
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
.++..+.+.+||++|+++|......++.+..++...+.
T Consensus 44 ~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 44 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred ECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 45566778899999999998888877777776665444
No 453
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=88.33 E-value=0.44 Score=34.79 Aligned_cols=35 Identities=37% Similarity=0.787 Sum_probs=26.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
..+..+.+.+||++|+++|....+..+.+..++..
T Consensus 44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (175)
T cd01870 44 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 78 (175)
T ss_pred ECCEEEEEEEEeCCCchhhhhccccccCCCCEEEE
Confidence 45677899999999999988877776655555543
No 454
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=88.32 E-value=0.31 Score=36.34 Aligned_cols=39 Identities=38% Similarity=0.873 Sum_probs=30.7
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
...+..+.+.+||++|++++..+.+.++.+..++...+.
T Consensus 44 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d 82 (193)
T cd04118 44 VVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYD 82 (193)
T ss_pred EECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEE
Confidence 346777889999999999998888877777777665554
No 455
>KOG3929|consensus
Probab=88.13 E-value=0.45 Score=37.65 Aligned_cols=85 Identities=5% Similarity=0.021 Sum_probs=44.7
Q ss_pred ceeeeEEEecCceEEEEEEeeecCcccccc---ccccccceeeEEEEECC-eEEEEEEEeCCChhhhcchhHhhh--c--
Q psy2518 25 DAITKAYYRGAQACVITFSTIDRDSFEAAH---SWKMKVSIKRTIKECEG-EEVRLMLWDTAGQEEFDAITKAYY--R-- 96 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~---~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~g~~~~~~~~~~~~--~-- 96 (208)
+..+-|.+.|..+....++ ..|+-+. .||...+|..-.-.-.+ .+-..++|+-+|......+..--+ +
T Consensus 43 ~~E~~I~~~Gn~~~tt~I~----~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 43 KFEFFIGSKGNGGKTTIIL----RCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred cceeEEEEecCCceeEeeh----hhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 4456677888877733333 4555444 44444343322211122 233467999888654433322111 1
Q ss_pred CCcEEEEEEeCCChhhH
Q psy2518 97 GAQACVITFSTIDRDSF 113 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~ 113 (208)
..-.+|++.|+++++.+
T Consensus 119 ~~~slIL~LDls~p~~~ 135 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPNDL 135 (363)
T ss_pred hhhhheeeeecCChHHH
Confidence 12346889999998643
No 456
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.88 E-value=9.1 Score=28.29 Aligned_cols=144 Identities=13% Similarity=0.122 Sum_probs=78.6
Q ss_pred eeeeEEEecCceEEEE-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCC-Chh------------------
Q psy2518 26 AITKAYYRGAQACVIT-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTA-GQE------------------ 85 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~-g~~------------------ 85 (208)
...||.+-|..|+||+ +.....+.... ..-++| -++..++.-+|..+-+.|.|.. |.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~-~g~kvg-Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLRE-KGYKVG-GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHh-cCceee-eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 4689999999999993 22111222222 223344 4566777778888888888876 211
Q ss_pred -------hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy2518 86 -------EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSR 157 (208)
Q Consensus 86 -------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~ 157 (208)
..-...+..++.||+++ .|---+-.+. .+++...+..... ..|++....+.+. + ...+ -.+
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr-~------P~v~-~ik 150 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR-H------PLVQ-RIK 150 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC-C------hHHH-Hhh
Confidence 11122334556678654 4533332221 1344444444444 6787777776653 1 1122 233
Q ss_pred HhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 158 ALGCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 158 ~~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
..+.-++. .+-.|-+.+++.+...+
T Consensus 151 ~~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 151 KLGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred hcCCEEEE---EccchhhHHHHHHHHHh
Confidence 34443433 56677778888777654
No 457
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=87.67 E-value=6.1 Score=30.56 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=42.5
Q ss_pred EEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCEEEEEeCCCC
Q psy2518 75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDL 141 (208)
Q Consensus 75 ~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~piivvgnK~Dl 141 (208)
.+-|.||++.. .......+..+|.++++...+ ..++..+..-+..+.+ .....+.-++.|++|.
T Consensus 116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~ 180 (246)
T TIGR03371 116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDP 180 (246)
T ss_pred CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence 68999999842 234566778999999999876 4555555532333332 2224557788999985
No 458
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=87.67 E-value=0.24 Score=37.04 Aligned_cols=38 Identities=47% Similarity=0.945 Sum_probs=28.9
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..+..+.+.+||++|++++......++.+..++...+.
T Consensus 45 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D 82 (191)
T cd04112 45 VDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYD 82 (191)
T ss_pred ECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEE
Confidence 45677899999999999988877777777666655444
No 459
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=87.65 E-value=0.24 Score=36.83 Aligned_cols=47 Identities=38% Similarity=0.861 Sum_probs=34.7
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~ 51 (208)
..++..+.+.+||++|+++|....+.++.+..++...+......+|.
T Consensus 43 ~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~ 89 (188)
T cd04125 43 YIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFE 89 (188)
T ss_pred EECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHH
Confidence 34567889999999999999988888888888877655543333333
No 460
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=87.17 E-value=0.21 Score=35.93 Aligned_cols=35 Identities=86% Similarity=1.446 Sum_probs=26.1
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
+..+.+++||++|+++|......++.+..++...+
T Consensus 48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~ 82 (162)
T cd04106 48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVF 82 (162)
T ss_pred CCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEE
Confidence 66789999999999988877666666665555433
No 461
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=87.12 E-value=0.24 Score=35.97 Aligned_cols=37 Identities=46% Similarity=0.944 Sum_probs=27.4
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
+++.+.+.+||++|+++|......++.+..++...+.
T Consensus 46 ~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d 82 (165)
T cd01865 46 NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 82 (165)
T ss_pred CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEE
Confidence 4667899999999999888776666666666655444
No 462
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=87.07 E-value=0.18 Score=36.30 Aligned_cols=38 Identities=21% Similarity=0.604 Sum_probs=28.8
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..+..+.+.+||++|+++|....+.++-+..++...+.
T Consensus 44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D 81 (168)
T cd04119 44 VRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYD 81 (168)
T ss_pred ECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEE
Confidence 35678899999999999888777777766666555443
No 463
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=87.00 E-value=7.5 Score=29.56 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=51.8
Q ss_pred eEEEEEEEeCCChhhhcchh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCC-EEEEEeCCCCCCCCCC
Q psy2518 72 EEVRLMLWDTAGQEEFDAIT-KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIP-TVLVQNKIDLLDQSVV 147 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p-iivvgnK~Dl~~~~~v 147 (208)
..+.+.+.||+|......+. ....+.||.++++.+.+ ..+...+...+..+..... +.+ ..++.|+++.. .
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~ 189 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----R 189 (212)
T ss_pred cCCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----c
Confidence 45788999997644322211 11124799999999875 4555554444444433322 333 45889999853 3
Q ss_pred CHHHHHHHHHHhCCeEE
Q psy2518 148 APEEADLLSRALGCRLM 164 (208)
Q Consensus 148 ~~~~~~~~~~~~~~~~~ 164 (208)
..+..+++.+.++.+.+
T Consensus 190 ~~~~~~~~~~~~~~~vl 206 (212)
T cd02117 190 ETELIDAFAERLGTQVI 206 (212)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 34556677777776554
No 464
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=86.93 E-value=0.23 Score=35.73 Aligned_cols=38 Identities=39% Similarity=0.637 Sum_probs=28.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
.++..+.+.+||++|++++.....-++.+..++...+.
T Consensus 45 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 82 (164)
T cd04145 45 IDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFS 82 (164)
T ss_pred ECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 45667889999999999888877777777666654433
No 465
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=86.76 E-value=0.28 Score=37.38 Aligned_cols=34 Identities=47% Similarity=1.006 Sum_probs=30.9
Q ss_pred eEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
.+.+.+||++||++|+.....+..|..++...+.
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d 86 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYD 86 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEe
Confidence 7889999999999999999999999999887554
No 466
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=86.54 E-value=5.1 Score=26.90 Aligned_cols=61 Identities=13% Similarity=-0.003 Sum_probs=41.2
Q ss_pred EEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeC
Q psy2518 75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNK 138 (208)
Q Consensus 75 ~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK 138 (208)
.+.|.||++... ......+..+|.++++.+.+ ..+...+..+++.+.+... ...+.+|.|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 689999987543 22345678899999998876 4567767776666655432 2456666664
No 467
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=86.48 E-value=6.7 Score=32.18 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=57.2
Q ss_pred eEEEEEEEeCCChhhhc--------chhHh----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy2518 72 EEVRLMLWDTAGQEEFD--------AITKA----YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKI 139 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~--------~~~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~ 139 (208)
..+.+.|.||+|..... .+... .-...+..++|.|.+.. .+.+.+ .....+. -.+--+|.||.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~--~~~~giIlTKl 269 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA--VGLTGIILTKL 269 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh--CCCCEEEEECC
Confidence 34678999999963321 11111 01246778899998853 222322 1112111 23456788999
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 140 DLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 140 Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
|-.. .--.+...+...+.|+..++ +|++++++-.
T Consensus 270 D~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 270 DGTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 9432 23345566777899998888 7888877644
No 468
>KOG0447|consensus
Probab=86.09 E-value=7.5 Score=34.36 Aligned_cols=80 Identities=25% Similarity=0.357 Sum_probs=49.8
Q ss_pred EEEEEeCCCh-------------hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH-HhhcC-CCCEEEEEeCC
Q psy2518 75 RLMLWDTAGQ-------------EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECG-EIPTVLVQNKI 139 (208)
Q Consensus 75 ~l~i~Dt~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~-~~~~~-~~piivvgnK~ 139 (208)
...+.|.||- +....+.+.++.+.++||+|.-=- |.+.-......+ .+.-| ...-|+|.+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 4556787772 344556788999999999997422 222111122222 22233 67789999999
Q ss_pred CCCCCCCCCHHHHHHHHH
Q psy2518 140 DLLDQSVVAPEEADLLSR 157 (208)
Q Consensus 140 Dl~~~~~v~~~~~~~~~~ 157 (208)
|+.++..-++..+++...
T Consensus 490 DlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIE 507 (980)
T ss_pred chhhhccCCHHHHHHHHh
Confidence 997765666666665543
No 469
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=85.87 E-value=0.65 Score=33.74 Aligned_cols=35 Identities=31% Similarity=0.620 Sum_probs=27.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
..+..+.+.+||++|+++|......++.+..++..
T Consensus 44 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vl 78 (168)
T cd04177 44 IDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLL 78 (168)
T ss_pred ECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEE
Confidence 45677889999999999988887777777665543
No 470
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=85.78 E-value=0.32 Score=35.15 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=28.8
Q ss_pred ceeeeEEEecCceEEE-E-EEeeecCc-cccccccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518 25 DAITKAYYRGAQACVI-T-FSTIDRDS-FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG 83 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk-~-~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g 83 (208)
.....++++|.+++|| + ++.+.... +.....+....+ ...+..+ ..+.+.||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCC
Confidence 4567799999999999 3 34333322 111111111111 2222332 2478999998
No 471
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=85.71 E-value=9.3 Score=31.91 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=53.2
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDL 141 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl 141 (208)
.+.+.+.|-| +. .......++..+|.+++|.+.+ -.+..+.++.+..+++..+ ..+..++.||.+.
T Consensus 217 ~~~~vV~Dlp-~~-~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~ 283 (366)
T COG4963 217 SFDFVVVDLP-NI-WTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPILVLNRVGV 283 (366)
T ss_pred cCCeEEEcCC-Cc-cchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCC
Confidence 5667888988 22 2234667899999999999987 5688888999999998887 7888899999985
No 472
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.60 E-value=4.9 Score=38.73 Aligned_cols=109 Identities=19% Similarity=0.064 Sum_probs=60.1
Q ss_pred EEEecCceEEE-EEEeeecCccccccc----cccccceeeEEE--EECCeEEEEEEEeCCChh--------hhcchhHhh
Q psy2518 30 AYYRGAQACVI-TFSTIDRDSFEAAHS----WKMKVSIKRTIK--ECEGEEVRLMLWDTAGQE--------EFDAITKAY 94 (208)
Q Consensus 30 i~~vG~s~~gk-~~~~~~~~~f~~~~~----~t~~~~~~~~~~--~~~~~~~~l~i~Dt~g~~--------~~~~~~~~~ 94 (208)
.+++|.-|+|| +.+......|.-... .+.+.. ...+ .+.. .--+.||+|.. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g--T~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG--TRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCC--CcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHH
Confidence 36789999999 445444555542111 111110 0111 1112 24577888831 112233322
Q ss_pred ---------hcCCcEEEEEEeCCChhh----H-----HHHHHHHHHHHhhcC-CCCEEEEEeCCCCCC
Q psy2518 95 ---------YRGAQACVITFSTIDRDS----F-----EAAHSWKMKVENECG-EIPTVLVQNKIDLLD 143 (208)
Q Consensus 95 ---------~~~~d~ii~v~d~~~~~s----~-----~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~ 143 (208)
.+..|+|++..|+.+--+ . ..+..=+.++..... ..|++++.||.|+..
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 457899999999865321 1 122333455555555 899999999999854
No 473
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=85.19 E-value=0.35 Score=36.98 Aligned_cols=45 Identities=47% Similarity=0.938 Sum_probs=32.8
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~ 51 (208)
.+..+.+++||++|+++|....+.++.+..++...+......+|.
T Consensus 48 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~ 92 (211)
T cd04111 48 PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFE 92 (211)
T ss_pred CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHH
Confidence 466789999999999999988888887777766555433333333
No 474
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=85.07 E-value=0.38 Score=34.86 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=25.7
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
.+..+.+.+||++|+++|....+..+.+..++...+
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 45 SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 456788999999999988876666665555554433
No 475
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=84.75 E-value=0.4 Score=36.19 Aligned_cols=37 Identities=49% Similarity=1.044 Sum_probs=29.6
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
++..+.+.+||++|++.|+.....++.+..++...+.
T Consensus 51 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D 87 (199)
T cd04110 51 NGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 87 (199)
T ss_pred CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEE
Confidence 4667889999999999999888888877776655444
No 476
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=84.66 E-value=0.31 Score=35.11 Aligned_cols=38 Identities=39% Similarity=0.653 Sum_probs=28.7
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..+..+.+.+||++|+++|....+.++.+..++...+.
T Consensus 43 ~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 43 IDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred ECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 45667899999999999998877777766666654444
No 477
>PRK14974 cell division protein FtsY; Provisional
Probab=84.62 E-value=7.8 Score=32.08 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=56.2
Q ss_pred EEEEEEeCCChhhhcc----hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC
Q psy2518 74 VRLMLWDTAGQEEFDA----ITKAY--YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV 147 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v 147 (208)
+.+.+.||+|...... ..... ....|.+++|.|.+....--.. .....+. -.+--++.||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~---a~~f~~~--~~~~giIlTKlD~~~~--- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ---AREFNEA--VGIDGVILTKVDADAK--- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH---HHHHHhc--CCCCEEEEeeecCCCC---
Confidence 4589999999643211 11111 2357889999998764321111 1111111 1234667899996332
Q ss_pred CHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 148 APEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 148 ~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
--.+...+...+.|+..++ +|++++++...
T Consensus 295 -~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 295 -GGAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred -ccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 2334555666788888887 78988876543
No 478
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=84.52 E-value=1.1 Score=37.53 Aligned_cols=80 Identities=11% Similarity=0.001 Sum_probs=47.4
Q ss_pred eeEEEecCceEEE-E-EEeeecCcc--ccccccccccceeeEEEEECCe---------------EEEEEEEeCCChhhh-
Q psy2518 28 TKAYYRGAQACVI-T-FSTIDRDSF--EAAHSWKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQEEF- 87 (208)
Q Consensus 28 ~ki~~vG~s~~gk-~-~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~- 87 (208)
+|+-++|..++|| + |+.+....- ...|+-|. .+-....+.+.+. +..+++.|.||...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftT-i~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTT-IEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCC-CCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 6899999999999 3 444433333 12343331 1222233334332 246889999996432
Q ss_pred ---cchhH---hhhcCCcEEEEEEeCC
Q psy2518 88 ---DAITK---AYYRGAQACVITFSTI 108 (208)
Q Consensus 88 ---~~~~~---~~~~~~d~ii~v~d~~ 108 (208)
..+.. ..++.+|+++.|.+..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 22333 3468999999999984
No 479
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=84.46 E-value=6.6 Score=30.58 Aligned_cols=65 Identities=12% Similarity=0.049 Sum_probs=43.9
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL 141 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl 141 (208)
.+.+.|.|+++... ......+..+|.++++...+ ..++..+...+..+.+.. ..++.++.|+.+.
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG-IEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC-CCceEEEEeCcCc
Confidence 46788999987532 22345567899999998876 556666666655555432 2467778898874
No 480
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=84.36 E-value=0.24 Score=35.92 Aligned_cols=36 Identities=17% Similarity=0.564 Sum_probs=29.1
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
.+.+.+.+||++|+++|+...+-++.|..++.-.+.
T Consensus 41 ~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 41 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 346889999999999998888888888887766544
No 481
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=84.27 E-value=0.37 Score=34.88 Aligned_cols=38 Identities=47% Similarity=1.010 Sum_probs=26.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
.++..+.+.+||++|+++|....+-++.+..++.-.+.
T Consensus 46 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d 83 (166)
T cd01869 46 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 83 (166)
T ss_pred ECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEE
Confidence 35667789999999998887776666655555554433
No 482
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=84.19 E-value=0.39 Score=37.10 Aligned_cols=44 Identities=34% Similarity=0.702 Sum_probs=31.5
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
..+.|.+||++|+++|..+...++.+..++...+......+|..
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~ 85 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEE 85 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHH
Confidence 35678999999999998887777777777766555443444443
No 483
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=84.10 E-value=0.22 Score=41.86 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=57.7
Q ss_pred eEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeC
Q psy2518 29 KAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107 (208)
Q Consensus 29 ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~ 107 (208)
-++++|..|+|| ++..+..+-| .|.-| .+-.||+++ |-...|+|+++....+.+-+.+=-.+..
T Consensus 351 lvFliG~NGsGKST~~~LLtGL~----~PqsG------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~ 415 (546)
T COG4615 351 LVFLIGGNGSGKSTLAMLLTGLY----QPQSG------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGP 415 (546)
T ss_pred EEEEECCCCCcHHHHHHHHhccc----CCCCC------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence 378899999999 5665556644 55444 234566553 4445689999888888777666556666
Q ss_pred CChhhHHHHHHHHHHHHh
Q psy2518 108 IDRDSFEAAHSWKMKVEN 125 (208)
Q Consensus 108 ~~~~s~~~~~~~~~~~~~ 125 (208)
.+..|.+.+..|++.+.-
T Consensus 416 e~~as~q~i~~~LqrLel 433 (546)
T COG4615 416 EGKASPQLIEKWLQRLEL 433 (546)
T ss_pred ccCCChHHHHHHHHHHHH
Confidence 776788889999988753
No 484
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=84.09 E-value=12 Score=29.65 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=49.0
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh--cCCCCE-EEEEeCCCCCCCCCCCH
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE--CGEIPT-VLVQNKIDLLDQSVVAP 149 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~--~~~~pi-ivvgnK~Dl~~~~~v~~ 149 (208)
.+.+.|+||+|...... ....+..||.+|++...+ ..++..+...+..+.+. ..+.++ -++.|+.+. .
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~-~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~ 187 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAND-FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------T 187 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCc-hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------H
Confidence 57789999976532222 223466799999988663 55666655554444332 225554 377899762 2
Q ss_pred HHHHHHHHHhCCeEE
Q psy2518 150 EEADLLSRALGCRLM 164 (208)
Q Consensus 150 ~~~~~~~~~~~~~~~ 164 (208)
+..+++.+.++.+++
T Consensus 188 ~~~~~~~~~~g~~vl 202 (270)
T PRK13185 188 DLIDKFNEAVGLKVL 202 (270)
T ss_pred HHHHHHHHHcCCCEE
Confidence 344556666655433
No 485
>PLN03118 Rab family protein; Provisional
Probab=83.76 E-value=0.37 Score=36.69 Aligned_cols=38 Identities=42% Similarity=0.927 Sum_probs=28.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..+..+.+.+||++|+++|......++.+..++...+.
T Consensus 57 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D 94 (211)
T PLN03118 57 VGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYD 94 (211)
T ss_pred ECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEE
Confidence 45677899999999999988877666666666555443
No 486
>CHL00175 minD septum-site determining protein; Validated
Probab=83.70 E-value=7.8 Score=30.86 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=42.5
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL 141 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl 141 (208)
.+.+.|+||++.-. ......+..+|.+++|.+.+ ..+...+...+..+.+.. ...+-+|.|+++.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~-~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG-IYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC-CCceEEEEeccCh
Confidence 46789999987532 23344567799999998766 556666655555555432 2345677899874
No 487
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=83.60 E-value=1.1 Score=32.00 Aligned_cols=32 Identities=47% Similarity=0.847 Sum_probs=22.6
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 38 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~ 38 (208)
.+..+.+.+||++|++++.......+.+..++
T Consensus 45 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~i 76 (161)
T cd01861 45 EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVA 76 (161)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 45567899999999988877665555554443
No 488
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=83.57 E-value=0.39 Score=34.48 Aligned_cols=37 Identities=38% Similarity=0.815 Sum_probs=26.1
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 41 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~ 41 (208)
..++..+.+.+||++|++++....+.++.+..++...
T Consensus 44 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 44 NLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred EECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4566788999999999988777666655555554443
No 489
>KOG0096|consensus
Probab=83.45 E-value=1.7 Score=32.75 Aligned_cols=35 Identities=37% Similarity=0.757 Sum_probs=30.6
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..+++..|||||||.+...--.++++.++....|.
T Consensus 57 g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFd 91 (216)
T KOG0096|consen 57 GQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFD 91 (216)
T ss_pred CcEEEEeeecccceeecccccccEEecceeEEEee
Confidence 37899999999999999999999999988876444
No 490
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=82.98 E-value=13 Score=27.01 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=53.4
Q ss_pred eEEEEEEEeCCChhhhcchhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----C
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYY--RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD-----Q 144 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~-----~ 144 (208)
..+.+-|.||++... ....... ..+|.++++...+ +.+...+..++..+.+.. ....-++.|+.+... .
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~-~~~~gvv~N~~~~~~~~~~~~ 141 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN-IPILGVVENMSYFVCPHCGKK 141 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC-CCeEEEEEcCCcccCCCCCCc
Confidence 456789999987532 1112222 5789999998776 567777777777776652 223456789987421 1
Q ss_pred CCC-CHHHHHHHHHHhCCeE
Q psy2518 145 SVV-APEEADLLSRALGCRL 163 (208)
Q Consensus 145 ~~v-~~~~~~~~~~~~~~~~ 163 (208)
... ..+..+++++.++.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~ 161 (169)
T cd02037 142 IYIFGKGGGEKLAEELGVPL 161 (169)
T ss_pred ccccCCccHHHHHHHcCCCE
Confidence 111 2245566777666544
No 491
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=82.46 E-value=0.43 Score=34.45 Aligned_cols=35 Identities=49% Similarity=0.930 Sum_probs=24.0
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..++..+.+++||++|+++|....+..+-+..++.
T Consensus 46 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 46 QIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred EECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 34567788999999999887766655554444443
No 492
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=82.42 E-value=0.47 Score=34.46 Aligned_cols=38 Identities=47% Similarity=1.003 Sum_probs=27.1
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..+..+.+.+||++|++++....+-++.+..++.-.+.
T Consensus 47 ~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d 84 (167)
T cd01867 47 LDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYD 84 (167)
T ss_pred ECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEE
Confidence 45677899999999998888776655555555554443
No 493
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=82.20 E-value=1.6 Score=27.96 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=40.4
Q ss_pred EEEecCceEEEE-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch-hHhhhcCCcEEEEEEeC
Q psy2518 30 AYYRGAQACVIT-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-TKAYYRGAQACVITFST 107 (208)
Q Consensus 30 i~~vG~s~~gk~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-~~~~~~~~d~ii~v~d~ 107 (208)
+.+.|..|+||+ +.......+... | .+...++ .+.+.|+++....... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-----g----~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-----G----KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-----C----CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 567788899993 221111222111 1 1222333 6789999876432211 14566789999999987
Q ss_pred CChhhHHHH
Q psy2518 108 IDRDSFEAA 116 (208)
Q Consensus 108 ~~~~s~~~~ 116 (208)
+.. +....
T Consensus 69 ~~~-~~~~~ 76 (99)
T cd01983 69 EAL-AVLGA 76 (99)
T ss_pred chh-hHHHH
Confidence 743 44443
No 494
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=82.10 E-value=23 Score=28.55 Aligned_cols=113 Identities=22% Similarity=0.210 Sum_probs=60.7
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh--cCCCCE-EEEEeCCCCCCC-----
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE--CGEIPT-VLVQNKIDLLDQ----- 144 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~--~~~~pi-ivvgnK~Dl~~~----- 144 (208)
.+.+.|.||+|.-.... ....+..||.++++.+.+ +.++..+...+..+... .++.+. -++.|+.+....
T Consensus 115 ~yD~IiIDt~~~l~~~a-~~aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~~~~~ 192 (290)
T CHL00072 115 EYDIILFDVLGDVVCGG-FAAPLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKYV 192 (290)
T ss_pred cCCEEEEecCCcceech-hhhhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHHHHHH
Confidence 46789999976522111 123456799999988765 45655554444333322 223333 477899873110
Q ss_pred --------CCCCHHHHHHHHHHhCCeEEEEecCCCCC---HHHHHHHHHHHHHHH
Q psy2518 145 --------SVVAPEEADLLSRALGCRLMRTSVKEDIN---VNSIFRYLTTKCLSE 188 (208)
Q Consensus 145 --------~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~---i~~~f~~i~~~~~~~ 188 (208)
..++.......+...+.++++.+.. ..+ ....|..+++.++.+
T Consensus 193 ~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~-s~~~~~~a~~y~~La~ell~~ 246 (290)
T CHL00072 193 EACPMPVLEVLPLIEDIRVSRVKGKTLFEMVES-EPSLNYVCDYYLNIADQLLSQ 246 (290)
T ss_pred HHcCCceEEECCCChHHHHHHhCCCceEEeCCC-CcchhHHHHHHHHHHHHHHhC
Confidence 0122222333334445556655432 222 466688888887654
No 495
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=82.08 E-value=0.52 Score=36.04 Aligned_cols=43 Identities=30% Similarity=0.536 Sum_probs=32.5
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~ 51 (208)
..+.+.+||++|++.|....+.++.+..++...+......+|.
T Consensus 48 ~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~ 90 (215)
T cd04109 48 LNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFE 90 (215)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHH
Confidence 4689999999999999988888888888777655543333443
No 496
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=82.02 E-value=0.54 Score=33.98 Aligned_cols=37 Identities=51% Similarity=1.023 Sum_probs=25.4
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
.++..+.+.+||++|+++|....+-++.+..++...+
T Consensus 47 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~ 83 (165)
T cd01864 47 IEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAY 83 (165)
T ss_pred ECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEE
Confidence 3566688999999999888776555555555554433
No 497
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=81.91 E-value=0.46 Score=34.79 Aligned_cols=35 Identities=26% Similarity=0.701 Sum_probs=26.4
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..+.+.+||++|+++|+.....++.+..++.-.+.
T Consensus 51 ~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 51 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 45889999999999988877666777666655444
No 498
>PLN00223 ADP-ribosylation factor; Provisional
Probab=81.88 E-value=0.35 Score=35.95 Aligned_cols=36 Identities=17% Similarity=0.614 Sum_probs=29.0
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 44 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~ 44 (208)
..+.+.+||++|+++++...+.++.|..++.-.+..
T Consensus 59 ~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~ 94 (181)
T PLN00223 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence 457899999999999998888888888777665553
No 499
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=81.85 E-value=0.73 Score=34.19 Aligned_cols=37 Identities=24% Similarity=0.549 Sum_probs=28.2
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
+++.+.+.+||++|+++++.....++.+..++...+.
T Consensus 48 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 84 (183)
T cd04152 48 NSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVD 84 (183)
T ss_pred CCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEE
Confidence 4467899999999999888777767777777665444
No 500
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=81.67 E-value=0.53 Score=34.27 Aligned_cols=35 Identities=49% Similarity=1.069 Sum_probs=24.8
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
..++.+.+.+||++|+++|....+-++-+..++..
T Consensus 48 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 48 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred ECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45677899999999998877766555555444443
Done!