Query psy2518
Match_columns 208
No_of_seqs 165 out of 1836
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 18:14:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 6.1E-42 2.1E-46 263.1 12.6 166 23-188 9-177 (216)
2 2fu5_C RAS-related protein RAB 100.0 2.8E-34 9.5E-39 214.1 18.4 170 23-192 4-176 (183)
3 2hup_A RAS-related protein RAB 100.0 5.3E-34 1.8E-38 216.4 14.4 170 21-190 23-196 (201)
4 2ew1_A RAS-related protein RAB 100.0 6E-34 2.1E-38 216.4 13.9 170 21-190 20-192 (201)
5 2a5j_A RAS-related protein RAB 100.0 4.2E-33 1.4E-37 209.5 16.2 172 19-190 13-187 (191)
6 3tw8_B RAS-related protein RAB 100.0 4.5E-33 1.5E-37 206.6 16.1 172 22-193 4-177 (181)
7 1zbd_A Rabphilin-3A; G protein 100.0 4.9E-33 1.7E-37 210.8 15.6 172 20-191 1-175 (203)
8 3tkl_A RAS-related protein RAB 100.0 9.5E-33 3.2E-37 207.8 16.1 172 22-193 11-185 (196)
9 3dz8_A RAS-related protein RAB 100.0 1.1E-33 3.7E-38 212.7 10.7 170 21-190 17-189 (191)
10 2o52_A RAS-related protein RAB 100.0 8.1E-33 2.8E-37 209.7 14.7 171 21-191 19-192 (200)
11 3cbq_A GTP-binding protein REM 100.0 1.1E-32 3.6E-37 208.4 14.9 166 22-187 18-188 (195)
12 2bme_A RAB4A, RAS-related prot 100.0 8.4E-33 2.9E-37 206.4 13.8 169 23-191 6-177 (186)
13 2gf9_A RAS-related protein RAB 100.0 1.7E-32 5.7E-37 205.8 15.0 168 22-189 17-187 (189)
14 2bcg_Y Protein YP2, GTP-bindin 100.0 2.3E-32 8E-37 207.7 16.0 169 23-191 4-175 (206)
15 3q3j_B RHO-related GTP-binding 100.0 3.3E-33 1.1E-37 214.1 10.8 167 23-190 23-206 (214)
16 2oil_A CATX-8, RAS-related pro 100.0 1.8E-32 6.1E-37 206.2 14.3 171 20-190 18-191 (193)
17 1z0f_A RAB14, member RAS oncog 100.0 2.7E-32 9.3E-37 202.0 14.4 165 22-186 10-177 (179)
18 1z08_A RAS-related protein RAB 100.0 9.9E-33 3.4E-37 202.9 11.8 163 24-186 3-168 (170)
19 2yc2_C IFT27, small RAB-relate 100.0 7.1E-32 2.4E-36 204.7 16.5 170 25-194 18-199 (208)
20 2g3y_A GTP-binding protein GEM 100.0 2.7E-32 9.2E-37 208.7 14.3 166 22-188 32-204 (211)
21 3c5c_A RAS-like protein 12; GD 100.0 1.4E-32 4.7E-37 206.3 12.3 161 24-186 18-185 (187)
22 2hxs_A RAB-26, RAS-related pro 100.0 1.1E-32 3.9E-37 204.2 11.6 163 25-187 4-173 (178)
23 3kkq_A RAS-related protein M-R 100.0 5.7E-32 2E-36 201.5 15.0 164 23-187 14-182 (183)
24 1z2a_A RAS-related protein RAB 100.0 2.4E-32 8.3E-37 200.3 12.8 162 25-186 3-166 (168)
25 2g6b_A RAS-related protein RAB 100.0 3.8E-32 1.3E-36 201.8 13.9 168 20-187 3-174 (180)
26 3cpj_B GTP-binding protein YPT 100.0 1.4E-32 4.8E-37 211.7 11.9 171 21-191 7-180 (223)
27 2f7s_A C25KG, RAS-related prot 100.0 2.2E-32 7.6E-37 209.4 12.9 171 21-191 19-203 (217)
28 3bc1_A RAS-related protein RAB 100.0 5.2E-32 1.8E-36 203.0 14.7 170 22-191 6-189 (195)
29 2efe_B Small GTP-binding prote 100.0 6.4E-32 2.2E-36 200.7 14.8 166 23-188 8-176 (181)
30 2il1_A RAB12; G-protein, GDP, 100.0 2.8E-32 9.4E-37 205.4 12.8 167 21-187 20-190 (192)
31 3t5g_A GTP-binding protein RHE 100.0 2.4E-32 8.3E-37 203.2 12.4 164 25-189 4-171 (181)
32 1g16_A RAS-related protein SEC 100.0 4.8E-32 1.6E-36 199.1 13.1 162 26-188 2-166 (170)
33 3ihw_A Centg3; RAS, centaurin, 100.0 1E-31 3.5E-36 201.1 14.8 160 23-189 16-182 (184)
34 2fg5_A RAB-22B, RAS-related pr 100.0 2.5E-32 8.6E-37 205.5 11.5 167 21-187 17-186 (192)
35 3q85_A GTP-binding protein REM 100.0 5.9E-32 2E-36 198.7 13.1 161 27-187 2-167 (169)
36 3reg_A RHO-like small GTPase; 100.0 5.4E-32 1.9E-36 203.8 13.1 168 20-188 16-189 (194)
37 1z0j_A RAB-22, RAS-related pro 100.0 1.2E-31 4E-36 197.1 14.6 162 24-185 3-167 (170)
38 1r2q_A RAS-related protein RAB 100.0 7.6E-32 2.6E-36 197.9 13.4 161 25-185 4-167 (170)
39 2q3h_A RAS homolog gene family 100.0 8.9E-32 3E-36 203.6 14.2 168 22-190 15-198 (201)
40 2iwr_A Centaurin gamma 1; ANK 100.0 1.6E-31 5.3E-36 198.3 15.0 160 25-191 5-173 (178)
41 1z06_A RAS-related protein RAB 100.0 8.6E-32 3E-36 201.9 13.6 166 21-186 14-187 (189)
42 2fn4_A P23, RAS-related protei 100.0 1.1E-31 3.6E-36 199.2 13.9 164 25-189 7-174 (181)
43 2p5s_A RAS and EF-hand domain 100.0 3.5E-32 1.2E-36 205.8 11.1 172 15-186 16-196 (199)
44 2nzj_A GTP-binding protein REM 100.0 2.9E-31 1E-35 195.9 15.4 164 25-189 2-171 (175)
45 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.6E-31 8.8E-36 196.7 14.4 164 23-187 3-174 (177)
46 2y8e_A RAB-protein 6, GH09086P 100.0 9.5E-32 3.2E-36 199.1 12.0 165 22-186 9-176 (179)
47 1ek0_A Protein (GTP-binding pr 100.0 1.7E-31 5.7E-36 196.1 13.1 160 26-185 2-167 (170)
48 3cph_A RAS-related protein SEC 100.0 2.7E-31 9.1E-36 202.5 14.6 174 17-191 10-186 (213)
49 2bov_A RAla, RAS-related prote 100.0 4E-31 1.4E-35 200.3 15.4 167 22-189 9-179 (206)
50 2atx_A Small GTP binding prote 100.0 2.5E-31 8.4E-36 200.1 14.2 162 24-186 15-192 (194)
51 3t1o_A Gliding protein MGLA; G 100.0 2.8E-32 9.5E-37 205.1 8.4 167 22-190 9-195 (198)
52 1x3s_A RAS-related protein RAB 100.0 3.8E-31 1.3E-35 198.7 14.3 166 23-189 11-180 (195)
53 3q72_A GTP-binding protein RAD 100.0 4.1E-31 1.4E-35 193.7 14.0 160 27-188 2-165 (166)
54 1gwn_A RHO-related GTP-binding 100.0 9.3E-32 3.2E-36 204.8 10.7 164 23-187 24-204 (205)
55 2a9k_A RAS-related protein RAL 100.0 4.3E-31 1.5E-35 196.9 13.9 168 21-189 12-183 (187)
56 1m7b_A RND3/RHOE small GTP-bin 100.0 9.8E-32 3.4E-36 200.9 10.3 162 25-187 5-183 (184)
57 3oes_A GTPase rhebl1; small GT 100.0 8.4E-32 2.9E-36 204.0 10.1 167 24-191 21-191 (201)
58 1u8z_A RAS-related protein RAL 100.0 4.7E-31 1.6E-35 193.1 12.8 160 26-186 3-166 (168)
59 2cjw_A GTP-binding protein GEM 100.0 1.4E-30 4.7E-35 196.3 15.6 164 25-189 4-174 (192)
60 1c1y_A RAS-related protein RAP 100.0 4.4E-31 1.5E-35 193.4 12.6 159 26-185 2-165 (167)
61 1ky3_A GTP-binding protein YPT 100.0 4E-31 1.4E-35 196.2 12.2 166 24-189 5-180 (182)
62 1vg8_A RAS-related protein RAB 100.0 9.1E-31 3.1E-35 198.6 14.3 167 24-191 5-179 (207)
63 2j0v_A RAC-like GTP-binding pr 100.0 7.6E-32 2.6E-36 205.7 8.4 165 25-190 7-183 (212)
64 3clv_A RAB5 protein, putative; 100.0 1.6E-30 5.4E-35 196.3 15.3 164 24-189 4-206 (208)
65 1mh1_A RAC1; GTP-binding, GTPa 100.0 4.1E-31 1.4E-35 197.0 11.4 162 25-187 3-180 (186)
66 4dsu_A GTPase KRAS, isoform 2B 100.0 3.6E-30 1.2E-34 192.3 16.6 164 26-191 3-170 (189)
67 1kao_A RAP2A; GTP-binding prot 100.0 7.9E-31 2.7E-35 191.8 12.0 160 26-186 2-165 (167)
68 2j1l_A RHO-related GTP-binding 100.0 6.4E-31 2.2E-35 201.2 12.0 164 25-189 32-211 (214)
69 3gj0_A GTP-binding nuclear pro 100.0 4.1E-31 1.4E-35 203.0 10.8 168 20-189 8-177 (221)
70 2atv_A RERG, RAS-like estrogen 100.0 1.2E-30 4E-35 196.9 13.0 163 25-189 26-193 (196)
71 3l0i_B RAS-related protein RAB 100.0 1.3E-32 4.4E-37 208.2 1.9 164 23-186 29-195 (199)
72 2gco_A H9, RHO-related GTP-bin 100.0 4E-30 1.4E-34 194.9 14.9 161 25-186 23-199 (201)
73 4djt_A GTP-binding nuclear pro 100.0 1.6E-30 5.6E-35 199.1 12.1 169 21-189 5-177 (218)
74 3bwd_D RAC-like GTP-binding pr 100.0 1.3E-31 4.3E-36 199.2 5.6 161 25-186 6-180 (182)
75 2fv8_A H6, RHO-related GTP-bin 100.0 7.7E-30 2.6E-34 194.1 13.8 162 25-187 23-200 (207)
76 4gzl_A RAS-related C3 botulinu 100.0 1.6E-30 5.6E-35 197.6 9.0 160 25-185 28-203 (204)
77 3con_A GTPase NRAS; structural 100.0 4.2E-29 1.4E-33 187.2 15.5 163 25-189 19-185 (190)
78 2ce2_X GTPase HRAS; signaling 100.0 3.4E-29 1.1E-33 182.7 14.1 159 26-186 2-164 (166)
79 2erx_A GTP-binding protein DI- 100.0 7.9E-30 2.7E-34 187.4 10.8 159 26-185 2-165 (172)
80 2f9l_A RAB11B, member RAS onco 100.0 1.3E-28 4.4E-33 186.3 15.2 166 24-189 2-170 (199)
81 4bas_A ADP-ribosylation factor 100.0 1.1E-29 3.8E-34 191.4 8.8 167 19-191 9-193 (199)
82 2gf0_A GTP-binding protein DI- 100.0 7.7E-29 2.6E-33 186.8 12.1 162 25-188 6-172 (199)
83 2zej_A Dardarin, leucine-rich 100.0 1.7E-30 5.7E-35 194.3 2.2 161 27-187 2-178 (184)
84 3th5_A RAS-related C3 botulinu 99.9 1.4E-30 4.6E-35 197.7 0.0 160 25-185 28-203 (204)
85 3llu_A RAS-related GTP-binding 100.0 1E-29 3.5E-34 191.9 4.0 162 21-185 14-195 (196)
86 1f6b_A SAR1; gtpases, N-termin 100.0 1.7E-28 5.8E-33 185.7 10.2 153 25-184 23-196 (198)
87 2wkq_A NPH1-1, RAS-related C3 100.0 2.4E-28 8.2E-33 197.9 11.7 163 24-187 152-330 (332)
88 1oix_A RAS-related protein RAB 100.0 7.1E-28 2.4E-32 181.2 12.9 165 21-185 23-190 (191)
89 1r8s_A ADP-ribosylation factor 100.0 3.7E-29 1.2E-33 182.9 4.4 153 28-187 1-162 (164)
90 1m2o_B GTP-binding protein SAR 99.9 5E-28 1.7E-32 181.9 10.4 153 25-184 21-189 (190)
91 1zj6_A ADP-ribosylation factor 99.9 9.1E-28 3.1E-32 179.6 10.9 156 25-187 14-178 (187)
92 2h57_A ADP-ribosylation factor 99.9 1.6E-27 5.4E-32 178.7 11.9 157 24-186 18-186 (190)
93 2b6h_A ADP-ribosylation factor 99.9 1.4E-28 4.7E-33 185.3 5.5 155 25-186 27-190 (192)
94 1fzq_A ADP-ribosylation factor 99.9 9.6E-28 3.3E-32 178.9 9.8 156 25-187 14-178 (181)
95 1zd9_A ADP-ribosylation factor 99.9 7.2E-29 2.5E-33 186.0 3.1 157 24-186 19-184 (188)
96 1upt_A ARL1, ADP-ribosylation 99.9 1.8E-28 6E-33 180.3 5.1 157 24-187 4-169 (171)
97 3r7w_B Gtpase2, GTP-binding pr 99.9 1.8E-29 6.3E-34 202.8 -0.4 155 29-189 1-176 (331)
98 2h17_A ADP-ribosylation factor 99.9 1.5E-27 5.1E-32 177.6 9.7 156 22-184 16-180 (181)
99 2x77_A ADP-ribosylation factor 99.9 2.8E-28 9.4E-33 182.6 4.0 156 25-187 20-184 (189)
100 1ksh_A ARF-like protein 2; sma 99.9 9.1E-27 3.1E-31 173.8 12.1 156 25-187 16-180 (186)
101 3c5h_A Glucocorticoid receptor 99.9 1.2E-28 4.3E-33 193.6 1.7 163 21-185 13-253 (255)
102 1moz_A ARL1, ADP-ribosylation 99.9 6.7E-27 2.3E-31 173.9 10.6 157 25-188 16-181 (183)
103 2wji_A Ferrous iron transport 99.9 6.6E-26 2.3E-30 166.4 7.9 151 27-185 3-163 (165)
104 2fh5_B SR-beta, signal recogni 99.9 1.1E-26 3.7E-31 177.3 3.5 156 25-184 5-213 (214)
105 3r7w_A Gtpase1, GTP-binding pr 99.9 9.2E-26 3.2E-30 181.7 7.9 157 26-186 2-180 (307)
106 3o47_A ADP-ribosylation factor 99.9 2.4E-26 8.1E-31 186.8 3.4 156 25-187 163-327 (329)
107 2qu8_A Putative nucleolar GTP- 99.9 1.9E-24 6.5E-29 166.7 12.9 163 25-190 27-208 (228)
108 2lkc_A Translation initiation 99.9 1E-24 3.4E-29 161.3 8.2 156 22-188 3-172 (178)
109 2cxx_A Probable GTP-binding pr 99.9 5.5E-25 1.9E-29 164.3 5.2 155 27-190 1-187 (190)
110 3dpu_A RAB family protein; roc 99.9 2.8E-25 9.5E-30 191.3 3.3 162 23-187 37-208 (535)
111 2wjg_A FEOB, ferrous iron tran 99.9 2.6E-24 9.1E-29 160.5 7.1 156 25-188 5-170 (188)
112 3lvq_E ARF-GAP with SH3 domain 99.9 5.5E-25 1.9E-29 187.9 3.7 158 24-188 319-485 (497)
113 1svi_A GTP-binding protein YSX 99.9 9.3E-24 3.2E-28 158.5 7.8 154 24-185 20-193 (195)
114 2dyk_A GTP-binding protein; GT 99.9 1.9E-23 6.3E-28 151.9 5.8 149 27-185 1-160 (161)
115 2gj8_A MNME, tRNA modification 99.9 8.3E-24 2.9E-28 156.4 2.6 151 26-186 3-165 (172)
116 1u0l_A Probable GTPase ENGC; p 99.9 1.7E-22 6E-27 162.1 9.8 133 41-183 33-169 (301)
117 3a1s_A Iron(II) transport prot 99.9 1.9E-22 6.4E-27 158.6 8.4 154 25-186 3-166 (258)
118 3pqc_A Probable GTP-binding pr 99.9 4.6E-22 1.6E-26 148.8 7.9 161 17-186 13-193 (195)
119 2xtz_A Guanine nucleotide-bind 99.9 1.6E-22 5.4E-27 165.2 5.1 142 47-188 143-346 (354)
120 1cip_A Protein (guanine nucleo 99.9 6.2E-22 2.1E-26 161.7 7.4 129 56-188 179-345 (353)
121 3b1v_A Ferrous iron uptake tra 99.8 2.6E-22 8.7E-27 158.8 4.2 151 26-185 2-162 (272)
122 1nrj_B SR-beta, signal recogni 99.8 5.2E-23 1.8E-27 157.3 -0.4 141 24-173 9-170 (218)
123 3iby_A Ferrous iron transport 99.8 3.7E-22 1.3E-26 156.7 4.1 149 28-184 2-164 (256)
124 3ohm_A Guanine nucleotide-bind 99.8 1.1E-21 3.6E-26 158.4 5.7 141 44-188 134-319 (327)
125 1azs_C GS-alpha; complex (lyas 99.8 6.7E-21 2.3E-25 157.5 10.3 123 65-189 210-387 (402)
126 4dhe_A Probable GTP-binding pr 99.8 2.4E-21 8.4E-26 148.3 6.5 166 21-189 23-213 (223)
127 3k53_A Ferrous iron transport 99.8 3.2E-21 1.1E-25 152.5 7.1 154 26-186 2-165 (271)
128 3iev_A GTP-binding protein ERA 99.8 1.2E-20 4.2E-25 151.8 9.9 162 22-186 5-181 (308)
129 2hjg_A GTP-binding protein ENG 99.8 3.9E-21 1.3E-25 161.6 6.9 159 25-188 173-350 (436)
130 4dcu_A GTP-binding protein ENG 99.8 6.2E-21 2.1E-25 161.2 7.4 159 25-188 193-370 (456)
131 3i8s_A Ferrous iron transport 99.8 1.7E-21 5.7E-26 154.4 3.3 153 26-186 2-168 (274)
132 1zcb_A G alpha I/13; GTP-bindi 99.8 1.6E-20 5.4E-25 153.9 8.4 129 56-188 187-354 (362)
133 4fid_A G protein alpha subunit 99.8 1.5E-20 5.2E-25 152.2 6.3 141 43-187 127-328 (340)
134 3qq5_A Small GTP-binding prote 99.8 1.2E-20 4.2E-25 157.3 4.6 156 24-187 31-196 (423)
135 3gee_A MNME, tRNA modification 99.8 3.1E-20 1.1E-24 157.2 6.9 155 23-186 229-397 (476)
136 2e87_A Hypothetical protein PH 99.8 5E-19 1.7E-23 145.2 12.1 160 25-188 165-337 (357)
137 1xzp_A Probable tRNA modificat 99.8 5.2E-19 1.8E-23 149.9 8.1 153 25-187 241-405 (482)
138 1mky_A Probable GTP-binding pr 99.8 8.3E-19 2.8E-23 147.6 8.6 151 28-187 2-166 (439)
139 3cb4_D GTP-binding protein LEP 99.8 3.2E-18 1.1E-22 148.2 12.0 156 26-186 3-181 (599)
140 1wf3_A GTP-binding protein; GT 99.8 7.4E-19 2.5E-23 140.9 6.9 152 26-185 6-171 (301)
141 1lnz_A SPO0B-associated GTP-bi 99.8 4E-19 1.4E-23 144.6 5.4 153 27-186 158-329 (342)
142 3lxx_A GTPase IMAP family memb 99.7 7.1E-18 2.4E-22 130.8 9.6 163 20-186 22-213 (239)
143 2qag_A Septin-2, protein NEDD5 99.7 6E-20 2E-24 150.8 -2.3 161 25-189 35-235 (361)
144 1s0u_A EIF-2-gamma, translatio 99.7 1.1E-17 3.7E-22 139.5 11.3 157 25-186 6-197 (408)
145 2ywe_A GTP-binding protein LEP 99.7 9.2E-18 3.2E-22 145.2 10.7 157 25-186 4-183 (600)
146 3geh_A MNME, tRNA modification 99.7 6.6E-19 2.3E-23 148.6 2.7 154 23-187 220-384 (462)
147 2xtp_A GTPase IMAP family memb 99.7 4.9E-18 1.7E-22 133.2 6.6 166 20-188 15-209 (260)
148 3p26_A Elongation factor 1 alp 99.7 3.2E-18 1.1E-22 145.6 5.4 153 25-177 31-228 (483)
149 2hjg_A GTP-binding protein ENG 99.7 7.2E-19 2.5E-23 147.8 1.2 151 27-186 3-164 (436)
150 1mky_A Probable GTP-binding pr 99.7 3.5E-17 1.2E-21 137.7 10.3 159 25-188 178-356 (439)
151 1wb1_A Translation elongation 99.7 1.6E-17 5.6E-22 141.0 8.4 156 23-186 15-188 (482)
152 3sjy_A Translation initiation 99.7 9.4E-17 3.2E-21 133.6 11.8 163 23-186 4-191 (403)
153 2ged_A SR-beta, signal recogni 99.7 1.9E-18 6.6E-23 129.2 1.0 114 24-146 45-173 (193)
154 3t5d_A Septin-7; GTP-binding p 99.7 2.5E-18 8.6E-23 136.1 1.7 158 25-185 6-202 (274)
155 2qtf_A Protein HFLX, GTP-bindi 99.7 1.8E-16 6.2E-21 130.1 12.1 157 27-187 178-354 (364)
156 3izy_P Translation initiation 99.7 1.8E-19 6E-24 154.1 -6.4 156 25-185 2-166 (537)
157 1kk1_A EIF2gamma; initiation o 99.7 9.5E-17 3.2E-21 133.9 9.8 157 25-186 8-199 (410)
158 3tr5_A RF-3, peptide chain rel 99.7 3.7E-17 1.3E-21 140.0 6.9 117 24-143 10-148 (528)
159 3j2k_7 ERF3, eukaryotic polype 99.7 6.7E-17 2.3E-21 135.8 8.0 152 24-179 14-217 (439)
160 4dcu_A GTP-binding protein ENG 99.7 1.4E-17 4.7E-22 140.7 2.1 155 23-186 19-184 (456)
161 1jny_A EF-1-alpha, elongation 99.6 1.3E-17 4.3E-22 140.1 0.7 152 25-179 4-205 (435)
162 2c78_A Elongation factor TU-A; 99.6 4.6E-17 1.6E-21 135.6 3.3 146 25-173 9-180 (405)
163 3lxw_A GTPase IMAP family memb 99.6 1.7E-16 5.9E-21 123.7 5.8 161 25-187 19-208 (247)
164 2elf_A Protein translation elo 99.6 2.3E-16 7.7E-21 129.8 5.3 145 29-188 23-181 (370)
165 1ega_A Protein (GTP-binding pr 99.6 1.5E-16 5.2E-21 127.5 3.9 153 27-185 8-173 (301)
166 1zun_B Sulfate adenylate trans 99.6 2E-16 6.8E-21 132.9 4.7 155 24-180 21-217 (434)
167 1g7s_A Translation initiation 99.6 6.4E-16 2.2E-20 133.9 7.8 157 26-188 4-219 (594)
168 1d2e_A Elongation factor TU (E 99.6 2.6E-16 8.9E-21 130.7 5.0 152 27-185 3-193 (397)
169 2aka_B Dynamin-1; fusion prote 99.6 4.1E-17 1.4E-21 130.2 0.0 163 20-184 19-250 (299)
170 1pui_A ENGB, probable GTP-bind 99.6 7.5E-16 2.6E-20 116.6 6.9 155 24-186 23-198 (210)
171 2qnr_A Septin-2, protein NEDD5 99.6 2.5E-17 8.6E-22 132.0 -1.7 160 25-188 16-215 (301)
172 1zo1_I IF2, translation initia 99.6 6.3E-18 2.2E-22 143.4 -6.2 150 26-183 3-163 (501)
173 1r5b_A Eukaryotic peptide chai 99.6 6.8E-17 2.3E-21 136.8 -0.1 151 25-179 41-244 (467)
174 2yv5_A YJEQ protein; hydrolase 99.6 5.2E-15 1.8E-19 118.6 10.8 130 46-183 34-165 (302)
175 2dy1_A Elongation factor G; tr 99.6 1.5E-15 5E-20 133.6 8.1 129 24-158 6-152 (665)
176 3izq_1 HBS1P, elongation facto 99.6 2.5E-16 8.6E-21 137.1 1.3 152 25-178 165-363 (611)
177 3avx_A Elongation factor TS, e 99.6 1.4E-15 4.6E-20 138.4 5.1 158 25-185 294-484 (1289)
178 1f60_A Elongation factor EEF1A 99.5 1.5E-15 5.3E-20 128.2 3.7 148 25-178 5-203 (458)
179 2qag_C Septin-7; cell cycle, c 99.5 1.2E-15 4.2E-20 127.0 -0.6 158 25-185 29-225 (418)
180 2hf9_A Probable hydrogenase ni 99.5 6.1E-17 2.1E-21 124.1 -8.7 153 25-186 36-223 (226)
181 3def_A T7I23.11 protein; chlor 99.5 5.4E-14 1.9E-18 110.4 7.9 121 26-150 35-172 (262)
182 1dar_A EF-G, elongation factor 99.5 4.1E-14 1.4E-18 124.8 7.2 113 24-143 9-143 (691)
183 1udx_A The GTP-binding protein 99.5 1E-13 3.5E-18 115.3 8.9 156 28-189 158-327 (416)
184 2h5e_A Peptide chain release f 99.5 6.5E-14 2.2E-18 120.0 7.0 117 24-143 10-148 (529)
185 3mca_A HBS1, elongation factor 99.5 7.1E-16 2.4E-20 133.8 -5.2 144 24-175 174-371 (592)
186 3t34_A Dynamin-related protein 99.5 2.9E-15 1E-19 122.8 -1.3 107 74-182 136-256 (360)
187 2rdo_7 EF-G, elongation factor 99.4 4.8E-13 1.6E-17 118.3 11.7 115 24-143 7-148 (704)
188 2j69_A Bacterial dynamin-like 99.4 5.4E-14 1.9E-18 124.2 5.3 112 75-188 175-326 (695)
189 1h65_A Chloroplast outer envel 99.4 1E-13 3.4E-18 109.3 4.6 122 26-149 38-174 (270)
190 2xex_A Elongation factor G; GT 99.4 2.7E-12 9.4E-17 113.3 10.9 113 24-143 7-141 (693)
191 2x2e_A Dynamin-1; nitration, h 99.3 5.2E-14 1.8E-18 115.1 -1.1 163 19-183 23-254 (353)
192 2wsm_A Hydrogenase expression/ 99.3 1.7E-13 5.9E-18 104.4 1.8 103 74-187 109-214 (221)
193 1jwy_B Dynamin A GTPase domain 99.3 5.6E-13 1.9E-17 107.0 4.7 112 74-187 131-262 (315)
194 1n0u_A EF-2, elongation factor 99.3 2E-12 6.9E-17 116.3 5.5 126 23-151 15-173 (842)
195 1wxq_A GTP-binding protein; st 99.3 8E-13 2.7E-17 109.5 2.0 83 28-110 1-114 (397)
196 3l82_B F-box only protein 4; T 99.3 6.8E-12 2.3E-16 94.1 6.1 103 81-186 109-222 (227)
197 1jal_A YCHF protein; nucleotid 99.2 3E-11 1E-15 98.6 6.9 141 28-170 3-240 (363)
198 3h2y_A GTPase family protein; 99.2 1.1E-10 3.6E-15 95.9 9.7 96 83-184 55-157 (368)
199 3l2o_B F-box only protein 4; s 99.1 1E-10 3.5E-15 91.9 7.6 103 81-186 194-307 (312)
200 3p32_A Probable GTPase RV1496/ 99.1 8.1E-12 2.8E-16 102.2 -0.7 104 73-187 171-284 (355)
201 2dby_A GTP-binding protein; GD 99.1 1.3E-10 4.6E-15 95.1 5.3 53 129-181 201-256 (368)
202 3ec1_A YQEH GTPase; atnos1, at 99.0 5.5E-10 1.9E-14 91.7 7.7 98 81-184 55-159 (369)
203 2qpt_A EH domain-containing pr 99.0 1E-10 3.4E-15 100.8 1.8 115 24-143 62-232 (550)
204 1yrb_A ATP(GTP)binding protein 98.9 2.4E-09 8.2E-14 83.4 8.5 109 74-186 109-256 (262)
205 3vqt_A RF-3, peptide chain rel 98.8 2.2E-08 7.4E-13 86.2 11.2 115 23-142 27-165 (548)
206 3zvr_A Dynamin-1; hydrolase, D 98.7 2.4E-09 8.1E-14 94.8 2.4 106 75-184 151-275 (772)
207 1puj_A YLQF, conserved hypothe 98.7 4.1E-08 1.4E-12 77.6 8.6 98 78-187 3-106 (282)
208 2p67_A LAO/AO transport system 98.6 9.4E-08 3.2E-12 77.6 7.0 103 74-186 149-260 (341)
209 3j25_A Tetracycline resistance 98.5 8E-08 2.7E-12 84.2 4.2 78 62-142 55-132 (638)
210 2www_A Methylmalonic aciduria 98.4 1.1E-06 3.9E-11 71.4 10.2 102 74-186 167-278 (349)
211 4fn5_A EF-G 1, elongation fact 98.4 3.1E-06 1.1E-10 75.0 12.4 68 72-142 83-150 (709)
212 2ohf_A Protein OLA1, GTP-bindi 98.4 4.4E-08 1.5E-12 80.7 0.4 90 24-113 19-132 (396)
213 4a9a_A Ribosome-interacting GT 98.2 9E-06 3.1E-10 66.6 10.5 131 26-161 71-222 (376)
214 3cnl_A YLQF, putative uncharac 98.1 1.8E-06 6.1E-11 67.5 4.0 83 89-183 13-97 (262)
215 2qm8_A GTPase/ATPase; G protei 98.1 9.1E-06 3.1E-10 65.8 7.8 103 74-186 148-260 (337)
216 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 1.5E-05 5E-10 65.8 8.5 85 25-109 18-127 (392)
217 1t9h_A YLOQ, probable GTPase E 98.0 1.6E-06 5.6E-11 69.2 2.2 91 88-180 77-170 (307)
218 2rcn_A Probable GTPase ENGC; Y 97.8 0.00011 3.8E-09 59.7 10.1 84 94-181 127-213 (358)
219 3ec1_A YQEH GTPase; atnos1, at 96.2 6.6E-05 2.2E-09 61.4 -6.6 135 27-171 162-315 (369)
220 3h2y_A GTPase family protein; 96.1 3.1E-05 1E-09 63.4 -9.0 134 27-168 160-311 (368)
221 2j37_W Signal recognition part 96.1 0.0034 1.2E-07 53.3 3.3 102 73-184 183-310 (504)
222 2qag_B Septin-6, protein NEDD5 96.0 0.0062 2.1E-07 50.6 4.6 60 100-168 151-217 (427)
223 4dkx_A RAS-related protein RAB 96.0 0.0011 3.9E-08 49.9 -0.1 48 5-52 56-103 (216)
224 3sop_A Neuronal-specific septi 95.9 0.0025 8.6E-08 49.7 1.5 44 96-143 110-154 (270)
225 1bif_A 6-phosphofructo-2-kinas 95.4 0.00026 8.9E-09 59.7 -6.1 101 25-126 37-148 (469)
226 1tq4_A IIGP1, interferon-induc 95.3 0.014 4.8E-07 48.3 4.0 153 28-188 70-254 (413)
227 3cnl_A YLQF, putative uncharac 95.2 0.00093 3.2E-08 52.0 -3.3 55 28-86 100-156 (262)
228 4dzz_A Plasmid partitioning pr 92.7 0.31 1.1E-05 35.4 6.5 84 74-164 76-162 (206)
229 3r7w_B Gtpase2, GTP-binding pr 92.4 0.018 6E-07 46.2 -0.7 34 9-42 44-80 (331)
230 1puj_A YLQF, conserved hypothe 92.2 0.012 4.1E-07 46.1 -2.0 57 25-85 118-176 (282)
231 3cwq_A Para family chromosome 92.1 0.86 2.9E-05 33.5 8.4 86 73-164 67-153 (209)
232 3dm5_A SRP54, signal recogniti 91.9 0.6 2.1E-05 38.9 7.8 86 74-168 183-274 (443)
233 1j8m_F SRP54, signal recogniti 91.2 0.96 3.3E-05 35.5 8.1 92 73-176 180-280 (297)
234 3end_A Light-independent proto 90.7 2.6 8.8E-05 32.8 10.2 84 73-165 156-242 (307)
235 2xtz_A Guanine nucleotide-bind 90.0 0.095 3.3E-06 42.4 1.3 35 9-43 181-215 (354)
236 3ea0_A ATPase, para family; al 90.0 3.1 0.00011 30.8 9.8 87 73-167 118-205 (245)
237 2v3c_C SRP54, signal recogniti 89.8 0.56 1.9E-05 39.0 5.8 84 73-166 180-271 (432)
238 3szr_A Interferon-induced GTP- 89.2 0.16 5.6E-06 44.1 2.2 66 75-142 148-227 (608)
239 3ohm_A Guanine nucleotide-bind 88.3 0.1 3.4E-06 41.8 0.3 33 10-42 166-198 (327)
240 1azs_C GS-alpha; complex (lyas 88.1 0.17 6E-06 41.6 1.6 33 11-43 217-249 (402)
241 3q3j_B RHO-related GTP-binding 87.2 0.16 5.4E-06 37.5 0.7 40 5-44 69-108 (214)
242 2j0v_A RAC-like GTP-binding pr 86.6 0.4 1.4E-05 35.0 2.7 39 5-43 51-89 (212)
243 2j1l_A RHO-related GTP-binding 86.6 0.52 1.8E-05 34.6 3.3 35 5-39 76-110 (214)
244 4fid_A G protein alpha subunit 86.4 0.14 4.9E-06 41.1 0.1 35 9-43 159-193 (340)
245 1m7b_A RND3/RHOE small GTP-bin 86.3 0.38 1.3E-05 34.2 2.4 37 5-41 49-85 (184)
246 3k9g_A PF-32 protein; ssgcid, 85.9 2.7 9.3E-05 31.8 7.2 65 73-140 144-208 (267)
247 3kl4_A SRP54, signal recogniti 85.7 3.1 0.00011 34.5 7.9 91 73-174 179-277 (433)
248 1gwn_A RHO-related GTP-binding 85.3 0.45 1.5E-05 34.8 2.4 38 5-42 70-107 (205)
249 3reg_A RHO-like small GTPase; 85.3 0.44 1.5E-05 34.2 2.3 39 5-43 65-103 (194)
250 3q72_A GTP-binding protein RAD 85.2 0.89 3E-05 31.4 3.9 39 5-43 43-81 (166)
251 1cip_A Protein (guanine nucleo 85.2 0.35 1.2E-05 39.0 1.9 34 10-43 192-225 (353)
252 3t1o_A Gliding protein MGLA; G 85.0 0.31 1.1E-05 34.8 1.4 38 5-42 68-105 (198)
253 1mh1_A RAC1; GTP-binding, GTPa 84.8 0.48 1.6E-05 33.5 2.3 36 5-40 47-82 (186)
254 1g3q_A MIND ATPase, cell divis 84.4 5.9 0.0002 29.1 8.4 84 73-164 111-194 (237)
255 2q3h_A RAS homolog gene family 84.3 0.5 1.7E-05 34.1 2.2 36 5-40 62-97 (201)
256 2ph1_A Nucleotide-binding prot 84.1 4 0.00014 30.9 7.4 91 72-165 127-224 (262)
257 1z08_A RAS-related protein RAB 84.1 0.76 2.6E-05 31.8 3.1 35 5-39 49-83 (170)
258 2g6b_A RAS-related protein RAB 83.9 0.83 2.8E-05 32.0 3.2 36 5-40 54-89 (180)
259 2atx_A Small GTP binding prote 83.7 0.53 1.8E-05 33.7 2.2 34 5-38 60-93 (194)
260 1hyq_A MIND, cell division inh 83.5 5.7 0.00019 29.8 8.1 84 73-164 110-193 (263)
261 1wcv_1 SOJ, segregation protei 82.9 4.2 0.00014 30.6 7.1 67 72-141 110-181 (257)
262 3t5g_A GTP-binding protein RHE 82.8 0.68 2.3E-05 32.6 2.4 39 5-43 48-86 (181)
263 2bcg_Y Protein YP2, GTP-bindin 82.3 0.7 2.4E-05 33.5 2.3 35 6-40 52-86 (206)
264 2fu5_C RAS-related protein RAB 82.1 0.64 2.2E-05 32.8 2.1 34 6-39 52-85 (183)
265 1f6b_A SAR1; gtpases, N-termin 81.8 0.41 1.4E-05 34.8 0.9 32 11-42 69-100 (198)
266 4gzl_A RAS-related C3 botulinu 81.5 0.36 1.2E-05 35.2 0.5 35 5-39 72-106 (204)
267 3kjh_A CO dehydrogenase/acetyl 81.4 12 0.00041 27.5 9.2 64 73-140 131-194 (254)
268 3llu_A RAS-related GTP-binding 81.3 0.37 1.3E-05 34.8 0.5 33 8-40 66-101 (196)
269 4bas_A ADP-ribosylation factor 81.3 0.36 1.2E-05 34.6 0.5 37 7-43 59-95 (199)
270 3cpj_B GTP-binding protein YPT 81.2 0.69 2.4E-05 34.1 2.0 37 6-42 57-93 (223)
271 3l0i_B RAS-related protein RAB 81.0 0.97 3.3E-05 32.5 2.7 38 5-42 76-113 (199)
272 2gco_A H9, RHO-related GTP-bin 80.7 0.84 2.9E-05 33.0 2.3 34 6-39 68-101 (201)
273 1zcb_A G alpha I/13; GTP-bindi 80.7 0.64 2.2E-05 37.6 1.7 34 10-43 200-233 (362)
274 2a5j_A RAS-related protein RAB 80.7 0.76 2.6E-05 32.8 2.0 35 6-40 65-99 (191)
275 2ew1_A RAS-related protein RAB 80.6 0.66 2.2E-05 33.8 1.7 35 6-40 70-104 (201)
276 3bwd_D RAC-like GTP-binding pr 80.2 0.43 1.5E-05 33.6 0.5 33 6-38 51-83 (182)
277 1vg8_A RAS-related protein RAB 79.9 1.2 4E-05 32.1 2.8 34 6-39 52-85 (207)
278 3tw8_B RAS-related protein RAB 79.8 1.1 3.7E-05 31.3 2.6 35 6-40 53-87 (181)
279 3ihw_A Centg3; RAS, centaurin, 79.8 0.45 1.5E-05 34.1 0.5 21 5-25 61-81 (184)
280 3con_A GTPase NRAS; structural 79.3 1.8 6.2E-05 30.6 3.7 34 6-39 64-97 (190)
281 3q9l_A Septum site-determining 79.2 5.1 0.00017 29.9 6.4 66 73-141 113-185 (260)
282 3kkq_A RAS-related protein M-R 79.1 0.73 2.5E-05 32.5 1.5 35 5-39 60-94 (183)
283 1wms_A RAB-9, RAB9, RAS-relate 78.6 0.86 2.9E-05 31.8 1.7 33 6-38 51-83 (177)
284 1z2a_A RAS-related protein RAB 78.5 1 3.4E-05 31.1 2.0 33 6-38 49-81 (168)
285 2fv8_A H6, RHO-related GTP-bin 78.4 1.1 3.6E-05 32.6 2.2 34 6-39 68-101 (207)
286 3th5_A RAS-related C3 botulinu 79.7 0.43 1.5E-05 34.6 0.0 35 6-40 73-107 (204)
287 1ky3_A GTP-binding protein YPT 78.2 1.4 4.6E-05 30.8 2.7 32 8-39 55-86 (182)
288 2hup_A RAS-related protein RAB 78.1 0.67 2.3E-05 33.6 1.0 35 6-40 73-107 (201)
289 2fn4_A P23, RAS-related protei 78.0 0.78 2.7E-05 32.1 1.3 35 6-40 52-86 (181)
290 3oes_A GTPase rhebl1; small GT 77.8 0.99 3.4E-05 32.6 1.9 38 6-43 67-104 (201)
291 3gj0_A GTP-binding nuclear pro 77.7 1.1 3.7E-05 32.9 2.1 39 5-43 58-96 (221)
292 2y8e_A RAB-protein 6, GH09086P 77.7 0.97 3.3E-05 31.5 1.8 33 6-38 58-90 (179)
293 2bme_A RAB4A, RAS-related prot 77.5 0.84 2.9E-05 32.2 1.4 36 5-40 53-88 (186)
294 2efe_B Small GTP-binding prote 77.3 1 3.5E-05 31.5 1.8 34 6-39 56-89 (181)
295 1x3s_A RAS-related protein RAB 77.3 0.99 3.4E-05 32.1 1.7 38 5-42 58-95 (195)
296 2gf9_A RAS-related protein RAB 77.1 1.3 4.4E-05 31.5 2.3 33 6-38 66-98 (189)
297 1r2q_A RAS-related protein RAB 77.0 0.99 3.4E-05 31.1 1.6 34 6-39 50-83 (170)
298 1c1y_A RAS-related protein RAP 76.9 0.75 2.6E-05 31.7 0.9 35 5-39 45-79 (167)
299 3c5c_A RAS-like protein 12; GD 76.5 1.1 3.7E-05 32.0 1.7 22 5-26 63-84 (187)
300 1upt_A ARL1, ADP-ribosylation 76.5 0.94 3.2E-05 31.4 1.4 34 10-43 50-83 (171)
301 4dsu_A GTPase KRAS, isoform 2B 76.4 0.77 2.6E-05 32.4 0.9 36 5-40 46-81 (189)
302 1ek0_A Protein (GTP-binding pr 76.3 1.1 3.6E-05 30.9 1.6 34 6-39 47-80 (170)
303 2fg5_A RAB-22B, RAS-related pr 76.3 1.1 3.9E-05 32.0 1.8 36 5-40 66-101 (192)
304 2hxs_A RAB-26, RAS-related pro 76.2 0.88 3E-05 31.8 1.2 31 9-39 54-84 (178)
305 2o52_A RAS-related protein RAB 76.1 0.91 3.1E-05 32.8 1.3 38 6-43 69-106 (200)
306 1g16_A RAS-related protein SEC 76.0 1.1 3.8E-05 30.9 1.7 25 6-30 47-71 (170)
307 3cph_A RAS-related protein SEC 75.9 1.3 4.5E-05 32.0 2.1 34 6-39 64-97 (213)
308 2zej_A Dardarin, leucine-rich 75.8 0.44 1.5E-05 34.0 -0.5 29 8-36 53-81 (184)
309 1cp2_A CP2, nitrogenase iron p 75.6 23 0.00078 26.5 10.3 87 73-164 115-205 (269)
310 3tkl_A RAS-related protein RAB 75.3 1.1 3.6E-05 32.0 1.4 38 5-42 59-96 (196)
311 1m2o_B GTP-binding protein SAR 75.0 1 3.4E-05 32.3 1.2 29 11-39 67-95 (190)
312 2h17_A ADP-ribosylation factor 74.7 1 3.6E-05 31.8 1.2 29 11-39 65-93 (181)
313 1r8s_A ADP-ribosylation factor 74.5 0.5 1.7E-05 32.6 -0.5 34 9-42 42-75 (164)
314 1kao_A RAP2A; GTP-binding prot 74.5 0.82 2.8E-05 31.4 0.6 36 5-40 45-80 (167)
315 2x77_A ADP-ribosylation factor 74.3 1.2 4.2E-05 31.5 1.6 34 10-43 65-98 (189)
316 2yc2_C IFT27, small RAB-relate 74.3 1.2 4.1E-05 32.0 1.5 27 10-36 72-98 (208)
317 1zbd_A Rabphilin-3A; G protein 74.1 1.2 4.1E-05 32.0 1.5 33 6-38 52-84 (203)
318 1z0j_A RAB-22, RAS-related pro 73.9 1.4 4.7E-05 30.4 1.7 33 6-38 50-82 (170)
319 2p5s_A RAS and EF-hand domain 73.7 0.87 3E-05 32.8 0.6 36 5-40 71-106 (199)
320 1z0f_A RAB14, member RAS oncog 72.9 1.2 4.2E-05 31.0 1.2 34 6-39 59-92 (179)
321 2oil_A CATX-8, RAS-related pro 72.8 1.2 4.2E-05 31.7 1.2 34 6-39 69-102 (193)
322 2bov_A RAla, RAS-related prote 72.4 0.98 3.4E-05 32.4 0.6 38 5-42 56-93 (206)
323 2il1_A RAB12; G-protein, GDP, 71.9 1.1 3.7E-05 32.1 0.7 35 6-40 70-104 (192)
324 1z06_A RAS-related protein RAB 71.8 1.1 3.7E-05 31.9 0.7 20 6-25 64-83 (189)
325 1fzq_A ADP-ribosylation factor 71.6 0.78 2.7E-05 32.6 -0.1 33 10-42 59-91 (181)
326 1u8z_A RAS-related protein RAL 71.4 1 3.5E-05 30.9 0.5 35 5-39 46-80 (168)
327 1f5n_A Interferon-induced guan 71.2 0.51 1.8E-05 40.8 -1.3 61 25-86 36-103 (592)
328 3cbq_A GTP-binding protein REM 71.1 0.6 2E-05 33.8 -0.8 21 6-26 67-87 (195)
329 2wkq_A NPH1-1, RAS-related C3 70.9 2.1 7.3E-05 33.3 2.3 35 5-39 197-231 (332)
330 1zj6_A ADP-ribosylation factor 70.9 0.99 3.4E-05 32.0 0.3 33 11-43 60-92 (187)
331 4djt_A GTP-binding nuclear pro 70.2 2.2 7.5E-05 31.0 2.1 36 8-43 58-93 (218)
332 2gf0_A GTP-binding protein DI- 69.5 1.3 4.3E-05 31.6 0.7 37 6-42 51-87 (199)
333 2oze_A ORF delta'; para, walke 69.1 12 0.0004 28.7 6.3 83 73-160 154-241 (298)
334 1ksh_A ARF-like protein 2; sma 69.0 1.1 3.7E-05 31.7 0.2 31 10-40 61-91 (186)
335 2erx_A GTP-binding protein DI- 68.9 1.3 4.5E-05 30.5 0.6 35 6-40 46-80 (172)
336 2a9k_A RAS-related protein RAL 68.7 1.3 4.5E-05 31.0 0.6 35 5-39 60-94 (187)
337 3clv_A RAB5 protein, putative; 68.6 1.4 4.9E-05 31.3 0.8 28 11-38 93-120 (208)
338 3q85_A GTP-binding protein REM 68.1 1.1 3.8E-05 31.0 0.1 22 5-26 45-66 (169)
339 2afh_E Nitrogenase iron protei 68.0 37 0.0013 25.7 9.5 87 73-164 118-208 (289)
340 2h57_A ADP-ribosylation factor 67.6 2.1 7E-05 30.4 1.5 28 11-38 67-94 (190)
341 3pg5_A Uncharacterized protein 67.3 30 0.001 27.5 8.5 42 73-117 153-194 (361)
342 2f9l_A RAB11B, member RAS onco 66.7 3 0.0001 29.9 2.2 34 6-39 49-82 (199)
343 2b6h_A ADP-ribosylation factor 66.7 1 3.5E-05 32.3 -0.3 32 9-40 71-102 (192)
344 3bc1_A RAS-related protein RAB 66.1 2.1 7E-05 30.2 1.2 29 10-38 69-97 (195)
345 2ce2_X GTPase HRAS; signaling 66.0 1.8 6E-05 29.5 0.8 34 6-39 46-79 (166)
346 2xj4_A MIPZ; replication, cell 65.6 10 0.00036 29.0 5.3 66 73-141 103-190 (286)
347 1zd9_A ADP-ribosylation factor 64.2 1.1 3.6E-05 32.0 -0.7 32 9-40 65-96 (188)
348 2iwr_A Centaurin gamma 1; ANK 63.6 3.9 0.00013 28.4 2.3 18 6-23 49-66 (178)
349 2fh5_B SR-beta, signal recogni 63.4 1.4 4.8E-05 32.0 -0.2 17 10-26 53-69 (214)
350 2lkc_A Translation initiation 62.8 3.8 0.00013 28.4 2.1 29 11-39 55-83 (178)
351 3dz8_A RAS-related protein RAB 62.7 0.98 3.4E-05 32.2 -1.1 35 6-40 67-101 (191)
352 3bfv_A CAPA1, CAPB2, membrane 60.7 15 0.0005 28.1 5.2 64 74-141 192-256 (271)
353 4a9a_A Ribosome-interacting GT 59.6 14 0.00048 29.9 5.1 50 129-185 249-298 (376)
354 2f7s_A C25KG, RAS-related prot 58.8 1.9 6.4E-05 31.4 -0.2 31 10-40 83-113 (217)
355 2nzj_A GTP-binding protein REM 58.5 3 0.0001 28.8 0.9 19 5-23 46-64 (175)
356 1moz_A ARL1, ADP-ribosylation 57.8 2.1 7.1E-05 30.0 -0.1 22 11-32 62-83 (183)
357 3r7w_A Gtpase1, GTP-binding pr 57.8 1.7 5.8E-05 34.0 -0.6 34 10-43 51-89 (307)
358 3o47_A ADP-ribosylation factor 56.2 1.6 5.4E-05 34.6 -1.0 36 8-43 206-241 (329)
359 3lvq_E ARF-GAP with SH3 domain 53.9 3.5 0.00012 34.5 0.7 35 9-43 364-398 (497)
360 2g3y_A GTP-binding protein GEM 52.6 2.9 9.9E-05 30.8 -0.0 35 6-40 82-117 (211)
361 3q5d_A Atlastin-1; G protein, 51.0 1.5 5.1E-05 36.6 -2.0 60 26-85 66-151 (447)
362 2cjw_A GTP-binding protein GEM 48.9 2.9 9.8E-05 30.0 -0.6 18 6-23 51-68 (192)
363 1oix_A RAS-related protein RAB 48.9 7.3 0.00025 27.7 1.7 27 6-32 73-99 (191)
364 3la6_A Tyrosine-protein kinase 46.7 81 0.0028 24.1 7.5 67 74-143 202-268 (286)
365 3ez9_A Para; DNA binding, wing 45.0 47 0.0016 26.7 6.1 66 73-140 247-321 (403)
366 3e70_C DPA, signal recognition 44.9 46 0.0016 26.2 5.9 90 76-176 214-309 (328)
367 3c5h_A Glucocorticoid receptor 43.0 7.8 0.00027 29.2 1.0 34 6-39 90-146 (255)
368 3cio_A ETK, tyrosine-protein k 42.1 50 0.0017 25.4 5.6 65 74-142 214-279 (299)
369 3do6_A Formate--tetrahydrofola 40.3 52 0.0018 27.7 5.5 69 113-185 346-416 (543)
370 4hs4_A Chromate reductase; tri 38.1 35 0.0012 24.6 3.9 72 91-164 67-143 (199)
371 1ex7_A Guanylate kinase; subst 38.0 5.3 0.00018 28.9 -0.6 12 29-40 3-14 (186)
372 2xxa_A Signal recognition part 37.6 1.7E+02 0.0058 23.9 9.5 82 73-164 183-271 (433)
373 2ark_A Flavodoxin; FMN, struct 37.1 74 0.0025 22.3 5.6 46 93-138 48-97 (188)
374 2chg_A Replication factor C sm 35.1 14 0.00049 26.1 1.4 12 30-41 41-52 (226)
375 2idc_A Anti-silencing protein 34.9 1.2E+02 0.0042 21.6 9.1 66 7-73 38-107 (179)
376 4ido_A Atlastin-1; GTPase, GTP 34.0 6.3 0.00022 32.9 -0.8 60 26-85 66-151 (457)
377 2ffh_A Protein (FFH); SRP54, s 33.6 1.9E+02 0.0066 23.6 8.1 85 74-167 181-271 (425)
378 2cu9_A Spcia1, histone chapero 33.3 1.2E+02 0.0043 21.2 9.0 66 7-73 36-106 (161)
379 1roc_A Anti-silencing protein 32.9 1.2E+02 0.0042 21.1 8.6 66 7-73 37-106 (155)
380 3fwy_A Light-independent proto 31.9 1.8E+02 0.0061 22.5 9.7 82 74-164 164-248 (314)
381 1r5b_A Eukaryotic peptide chai 31.8 24 0.00082 29.3 2.4 18 11-28 121-138 (467)
382 3dpu_A RAB family protein; roc 31.8 12 0.0004 31.7 0.5 32 8-39 95-126 (535)
383 2fz5_A Flavodoxin; alpha/beta 31.1 44 0.0015 21.8 3.3 68 94-164 43-112 (137)
384 1n0u_A EF-2, elongation factor 30.6 17 0.00056 32.9 1.3 34 7-40 94-127 (842)
385 1uf3_A Hypothetical protein TT 30.3 1.4E+02 0.0049 21.0 6.3 62 76-139 9-74 (228)
386 2hue_A Anti-silencing protein 30.2 1.5E+02 0.0051 21.1 9.0 66 7-73 42-111 (175)
387 1kgd_A CASK, peripheral plasma 30.1 8.6 0.00029 27.1 -0.6 12 29-40 7-18 (180)
388 1t0i_A YLR011WP; FMN binding p 29.6 47 0.0016 23.3 3.4 70 92-164 79-148 (191)
389 1rli_A Trp repressor binding p 29.3 51 0.0018 22.8 3.6 72 93-164 67-151 (184)
390 3svl_A Protein YIEF; E. coli C 28.6 72 0.0025 22.8 4.3 72 92-164 67-142 (193)
391 1jny_A EF-1-alpha, elongation 28.3 13 0.00043 30.6 0.1 23 7-29 80-102 (435)
392 3lnc_A Guanylate kinase, GMP k 28.2 20 0.00068 26.3 1.2 12 29-40 29-40 (231)
393 1g7s_A Translation initiation 28.1 29 0.001 29.9 2.3 28 12-39 71-98 (594)
394 1lvg_A Guanylate kinase, GMP k 27.9 9.7 0.00033 27.4 -0.6 12 29-40 6-17 (198)
395 1zun_B Sulfate adenylate trans 27.8 23 0.0008 28.9 1.6 21 9-29 102-122 (434)
396 1rtt_A Conserved hypothetical 27.7 28 0.00096 24.7 1.9 71 93-164 68-142 (193)
397 3cb4_D GTP-binding protein LEP 27.4 34 0.0011 29.6 2.6 34 7-40 67-100 (599)
398 3pzx_A Formate--tetrahydrofola 27.1 30 0.001 29.3 2.1 70 113-186 360-429 (557)
399 3co5_A Putative two-component 27.1 27 0.00093 23.4 1.6 15 27-41 27-41 (143)
400 2ywe_A GTP-binding protein LEP 26.4 34 0.0012 29.5 2.4 33 7-39 69-101 (600)
401 3rl5_A Metallophosphoesterase 26.2 32 0.0011 26.8 2.0 59 75-139 62-121 (296)
402 3p26_A Elongation factor 1 alp 25.6 15 0.00053 30.5 0.2 32 8-39 108-139 (483)
403 1zu4_A FTSY; GTPase, signal re 25.4 2.4E+02 0.0081 21.9 8.5 91 73-175 191-294 (320)
404 2yvt_A Hypothetical protein AQ 24.9 1.8E+02 0.0061 21.1 6.1 37 76-112 9-47 (260)
405 3u7r_A NADPH-dependent FMN red 24.5 85 0.0029 22.4 4.0 48 91-138 61-113 (190)
406 3ez2_A Plasmid partition prote 24.3 94 0.0032 24.8 4.6 35 73-109 244-278 (398)
407 3ney_A 55 kDa erythrocyte memb 24.1 13 0.00044 27.1 -0.6 13 28-40 20-32 (197)
408 3tr5_A RF-3, peptide chain rel 24.0 23 0.0008 30.0 1.0 28 161-188 251-278 (528)
409 2zki_A 199AA long hypothetical 23.7 1.1E+02 0.0039 21.3 4.6 74 92-165 65-143 (199)
410 1ko7_A HPR kinase/phosphatase; 23.6 65 0.0022 25.3 3.4 48 129-183 80-127 (314)
411 2px0_A Flagellar biosynthesis 23.5 1.5E+02 0.0052 22.7 5.5 85 74-167 183-273 (296)
412 2rdo_7 EF-G, elongation factor 23.3 20 0.00069 31.6 0.4 29 161-189 262-290 (704)
413 3k1y_A Oxidoreductase; structu 23.2 73 0.0025 22.8 3.4 71 91-162 79-150 (191)
414 3fvw_A Putative NAD(P)H-depend 23.1 69 0.0023 22.7 3.3 71 91-163 61-142 (192)
415 2wkj_A N-acetylneuraminate lya 23.0 2.6E+02 0.0089 21.5 6.9 57 95-157 104-164 (303)
416 2vzf_A NADH-dependent FMN redu 22.9 47 0.0016 23.6 2.3 70 93-164 65-136 (197)
417 1s96_A Guanylate kinase, GMP k 22.8 16 0.00053 27.0 -0.3 12 29-40 18-29 (219)
418 3tau_A Guanylate kinase, GMP k 22.6 16 0.00054 26.4 -0.3 24 161-188 166-189 (208)
419 2a5l_A Trp repressor binding p 22.4 80 0.0027 22.1 3.5 73 92-164 66-143 (200)
420 4gp7_A Metallophosphoesterase; 22.2 16 0.00055 25.4 -0.3 15 29-43 11-26 (171)
421 3fkq_A NTRC-like two-domain pr 22.1 93 0.0032 24.6 4.2 51 73-126 259-309 (373)
422 3lcm_A SMU.1420, putative oxid 21.9 80 0.0027 22.5 3.4 46 93-138 69-128 (196)
423 3nh6_A ATP-binding cassette SU 21.8 5.5 0.00019 31.3 -3.1 20 29-48 82-102 (306)
424 3h4m_A Proteasome-activating n 21.8 21 0.00073 26.9 0.3 15 27-41 51-65 (285)
425 3gfs_A FMN-dependent NADPH-azo 21.8 39 0.0013 23.5 1.6 72 92-164 58-130 (174)
426 3a00_A Guanylate kinase, GMP k 21.7 16 0.00055 25.8 -0.4 11 30-40 4-14 (186)
427 3izq_1 HBS1P, elongation facto 21.6 22 0.00075 30.8 0.3 29 9-37 243-271 (611)
428 2qor_A Guanylate kinase; phosp 21.2 18 0.0006 26.0 -0.3 13 28-40 13-25 (204)
429 3b6i_A Flavoprotein WRBA; flav 21.0 1.1E+02 0.0039 21.2 4.1 73 92-165 63-140 (198)
430 1ye8_A Protein THEP1, hypothet 21.0 17 0.0006 25.7 -0.4 12 29-40 2-13 (178)
431 1z6g_A Guanylate kinase; struc 20.5 17 0.00058 26.6 -0.5 12 29-40 25-36 (218)
432 2ff7_A Alpha-hemolysin translo 20.3 6.6 0.00022 29.7 -2.9 21 29-49 37-58 (247)
433 5nul_A Flavodoxin; electron tr 20.2 1.1E+02 0.0037 20.0 3.6 67 94-163 42-110 (138)
434 1d4a_A DT-diaphorase, quinone 20.1 1E+02 0.0036 23.3 3.9 45 94-138 90-148 (273)
435 3tr0_A Guanylate kinase, GMP k 20.1 19 0.00065 25.5 -0.3 16 173-188 172-187 (205)
436 3uc9_A Increased recombination 20.1 11 0.00036 28.5 -1.7 61 97-167 102-169 (233)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=6.1e-42 Score=263.12 Aligned_cols=166 Identities=27% Similarity=0.405 Sum_probs=143.7
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.+.+.|||+++|+++||| ++.|+..+.|.+.|.||+|.++..+.+.+++..+.++||||+|+++|..+++.+++++++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 456789999999999999 578899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
+++|||+++++||+++..|+..+.+..+ +.|++|||||+|+.++|+|+.++++++|++++++|+||||++|.||+++|+
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence 9999999999999999999999988766 899999999999999899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2518 180 YLTTKCLSE 188 (208)
Q Consensus 180 ~i~~~~~~~ 188 (208)
.|++.+...
T Consensus 169 ~i~~~i~~~ 177 (216)
T 4dkx_A 169 RVAAALPGM 177 (216)
T ss_dssp HHHHHC---
T ss_pred HHHHHHHhh
Confidence 999988654
No 2
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=2.8e-34 Score=214.10 Aligned_cols=170 Identities=27% Similarity=0.507 Sum_probs=130.9
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.++..+||+++|+.++|| +++++..+.|...+.||++.++..+.+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 467889999999999999 578888899999999999999988899999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
+++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+++.++.++++++++.+++++++|||++|.|++++|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF 163 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999987754 799999999999988788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy2518 180 YLTTKCLSELRQQ 192 (208)
Q Consensus 180 ~i~~~~~~~~~~~ 192 (208)
.+++.+.+...+.
T Consensus 164 ~l~~~i~~~~~~~ 176 (183)
T 2fu5_C 164 TLARDIKAKMDKN 176 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9999988765543
No 3
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=216.41 Aligned_cols=170 Identities=28% Similarity=0.443 Sum_probs=146.1
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
++.+...+||+++|..++|| +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++++..++..+++.+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 56688899999999999999 5678888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNS 176 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~ 176 (208)
|++++|||++++.+|+.+..|+..+.+... +.|+++|+||+|+.+.+.++.+++++++...++ ++++|||++|.||++
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999999988764 799999999999988788999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy2518 177 IFRYLTTKCLSELR 190 (208)
Q Consensus 177 ~f~~i~~~~~~~~~ 190 (208)
+|+.+++.+.+...
T Consensus 183 l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 183 AFLRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999876543
No 4
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6e-34 Score=216.37 Aligned_cols=170 Identities=32% Similarity=0.490 Sum_probs=156.3
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
++.++..+||+++|+.++|| +++++..+.|...+.+|++.++..+.+.+++..+.+++|||+|++++..++..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 56788999999999999999 4677888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
|++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..++++.++...++++++|||++|.|++++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL 179 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999887765 7899999999999877889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy2518 178 FRYLTTKCLSELR 190 (208)
Q Consensus 178 f~~i~~~~~~~~~ 190 (208)
|+.+++.+.....
T Consensus 180 ~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 180 FLDLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999886543
No 5
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=4.2e-33 Score=209.54 Aligned_cols=172 Identities=25% Similarity=0.428 Sum_probs=153.3
Q ss_pred cCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc
Q psy2518 19 AGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR 96 (208)
Q Consensus 19 ~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~ 96 (208)
+-...+...+||+++|..++|| +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++
T Consensus 13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 92 (191)
T 2a5j_A 13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR 92 (191)
T ss_dssp CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence 3455678899999999999999 56888889999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 175 (208)
.+|++++|||++++.+++.+..|+..+.+... +.|+++|+||+|+.+++.+..+++++++...+++++++||++|.|++
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE 172 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999999987755 89999999999998778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy2518 176 SIFRYLTTKCLSELR 190 (208)
Q Consensus 176 ~~f~~i~~~~~~~~~ 190 (208)
++|+.+++.+.++.+
T Consensus 173 ~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 173 EAFINTAKEIYRKIQ 187 (191)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999886543
No 6
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=206.61 Aligned_cols=172 Identities=28% Similarity=0.520 Sum_probs=155.7
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
..++..+||+++|..++|| +++++..+.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 3567899999999999999 56888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 100 ACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
++++|||++++.+++.+..|+..+.+..++.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999988877899999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q psy2518 180 YLTTKCLSELRQQE 193 (208)
Q Consensus 180 ~i~~~~~~~~~~~~ 193 (208)
.+.+.+.....+..
T Consensus 164 ~l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 164 CITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhh
Confidence 99999887665543
No 7
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=4.9e-33 Score=210.82 Aligned_cols=172 Identities=28% Similarity=0.471 Sum_probs=158.0
Q ss_pred CccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518 20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG 97 (208)
Q Consensus 20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 97 (208)
|++.++..+||+++|..++|| +++++..+.|...+.+|+|.++..+.+.+++..+.+.+|||+|++.+..++..+++.
T Consensus 1 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (203)
T 1zbd_A 1 GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRG 80 (203)
T ss_dssp -CCSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGG
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcC
Confidence 566788999999999999999 567888899999999999999988989999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 98 AQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
+|++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..+++.+++..+++++++|||++|.|+++
T Consensus 81 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 81 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQ 160 (203)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHH
Confidence 9999999999999999999999999987764 799999999999988788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy2518 177 IFRYLTTKCLSELRQ 191 (208)
Q Consensus 177 ~f~~i~~~~~~~~~~ 191 (208)
+|+.+.+.+.++..+
T Consensus 161 l~~~l~~~i~~~~~~ 175 (203)
T 1zbd_A 161 TFERLVDVICEKMSE 175 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998876543
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=9.5e-33 Score=207.80 Aligned_cols=172 Identities=27% Similarity=0.471 Sum_probs=157.1
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
..++..+||+++|..++|| +++++..+.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 3457789999999999999 56888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518 100 ACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 178 (208)
++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 170 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988766 78999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q psy2518 179 RYLTTKCLSELRQQE 193 (208)
Q Consensus 179 ~~i~~~~~~~~~~~~ 193 (208)
+.+++.+.+......
T Consensus 171 ~~l~~~i~~~~~~~~ 185 (196)
T 3tkl_A 171 MTMAAEIKKRMGPGA 185 (196)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcccc
Confidence 999999987765433
No 9
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-33 Score=212.75 Aligned_cols=170 Identities=29% Similarity=0.483 Sum_probs=158.0
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
+.+++..+||+++|..++|| +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 56688999999999999999 5788888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
|++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+++.+..++++.++...+++++++||++|.|++++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999999999999988764 8999999999999888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy2518 178 FRYLTTKCLSELR 190 (208)
Q Consensus 178 f~~i~~~~~~~~~ 190 (208)
|+.+++.+.++..
T Consensus 177 ~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 177 FERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcc
Confidence 9999999876543
No 10
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.1e-33 Score=209.66 Aligned_cols=171 Identities=23% Similarity=0.364 Sum_probs=144.4
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
.+.++..+||+++|..++|| +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 98 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 98 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccC
Confidence 45578899999999999999 5688888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+++.+..+++.++++..++++++|||++|.|++++
T Consensus 99 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 99 AGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 178 (200)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999877654 7999999999999877888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy2518 178 FRYLTTKCLSELRQ 191 (208)
Q Consensus 178 f~~i~~~~~~~~~~ 191 (208)
|+.+++.+.+...+
T Consensus 179 ~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 179 FLKCARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998865543
No 11
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=208.41 Aligned_cols=166 Identities=23% Similarity=0.250 Sum_probs=144.2
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-hhHhhhcCC
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-ITKAYYRGA 98 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-~~~~~~~~~ 98 (208)
......+||+++|++++|| +++++....+...+.++.+.++..+.+.+++..+.+.+|||+|++.+.. ++..+++++
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3456789999999999999 4566655555545667777888888899999999999999999988765 778889999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
|++++|||++++.+|+.+..|+..+..... +.|+++||||+|+.+++.++.++++++++.+++++++|||++|.|+++
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 999999999999999999999999887653 799999999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 177 IFRYLTTKCLS 187 (208)
Q Consensus 177 ~f~~i~~~~~~ 187 (208)
+|+.+++.+..
T Consensus 178 lf~~l~~~i~~ 188 (195)
T 3cbq_A 178 LFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 12
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=8.4e-33 Score=206.44 Aligned_cols=169 Identities=25% Similarity=0.391 Sum_probs=155.3
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.++..+||+++|..++|| +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+...+..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 467889999999999999 467888899999999999999989999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
+++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..+++.+++...++++++|||++|.|++++|+
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 9999999999999999999998877654 899999999999987788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy2518 180 YLTTKCLSELRQ 191 (208)
Q Consensus 180 ~i~~~~~~~~~~ 191 (208)
.+++.+.+...+
T Consensus 166 ~l~~~~~~~~~~ 177 (186)
T 2bme_A 166 QCARKILNKIES 177 (186)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhhh
Confidence 999998875543
No 13
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.7e-32 Score=205.79 Aligned_cols=168 Identities=29% Similarity=0.471 Sum_probs=154.5
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
...+..+||+++|..++|| +++++..+.|...+.+|+|.++..+.+..++..+.+.+|||+|++.+..++..+++.+|
T Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 96 (189)
T 2gf9_A 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189)
T ss_dssp TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence 3467789999999999999 56788889999999999999988888889999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518 100 ACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 178 (208)
++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..++++++++.++++++++||++|.|++++|
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 176 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999887764 79999999999998878888999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2518 179 RYLTTKCLSEL 189 (208)
Q Consensus 179 ~~i~~~~~~~~ 189 (208)
+.+++.+.++.
T Consensus 177 ~~l~~~i~~~~ 187 (189)
T 2gf9_A 177 ERLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 14
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.3e-32 Score=207.66 Aligned_cols=169 Identities=28% Similarity=0.458 Sum_probs=156.6
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.++..+||+++|..++|| +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++++..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 467899999999999999 578888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
+++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999987764 799999999999988788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy2518 180 YLTTKCLSELRQ 191 (208)
Q Consensus 180 ~i~~~~~~~~~~ 191 (208)
.+.+.+.+....
T Consensus 164 ~l~~~i~~~~~~ 175 (206)
T 2bcg_Y 164 TMARQIKESMSQ 175 (206)
T ss_dssp HHHHHHHHHCCH
T ss_pred HHHHHHHHHHhh
Confidence 999998876544
No 15
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=3.3e-33 Score=214.11 Aligned_cols=167 Identities=21% Similarity=0.368 Sum_probs=146.6
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.....+||+++|+.++|| +++++..+.|...+.||++.++ .+.+.+++..+.+.||||+|++++..++..+++++|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 346689999999999999 5788889999999999998665 5677888999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEE
Q psy2518 101 CVITFSTIDRDSFEA-AHSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRT 166 (208)
Q Consensus 101 ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~ 166 (208)
+++|||++++++|+. +..|+..+.+..++.|+++||||+|+.+ .+.++.+++..+++.+++ +|++|
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 181 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 181 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999999 6999999998888899999999999965 378999999999999999 99999
Q ss_pred ecCCCCC-HHHHHHHHHHHHHHHhh
Q psy2518 167 SVKEDIN-VNSIFRYLTTKCLSELR 190 (208)
Q Consensus 167 Sa~~~~~-i~~~f~~i~~~~~~~~~ 190 (208)
||++|.| |+++|+.+++.+.....
T Consensus 182 SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 182 SAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHC---
T ss_pred ccCCCcccHHHHHHHHHHHHhccCc
Confidence 9999998 99999999998875443
No 16
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=206.21 Aligned_cols=171 Identities=25% Similarity=0.422 Sum_probs=156.0
Q ss_pred CccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518 20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG 97 (208)
Q Consensus 20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 97 (208)
..+.+...+||+++|..++|| +++++..+.|...+.+|+|.++..+.+.+++..+.+.+|||+|++++..++..+++.
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 97 (193)
T 2oil_A 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 97 (193)
T ss_dssp --CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 356688999999999999999 567888899999999999999988999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 98 AQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
+|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..++++.++...++++++|||++|.|+++
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999999887654 799999999999987778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy2518 177 IFRYLTTKCLSELR 190 (208)
Q Consensus 177 ~f~~i~~~~~~~~~ 190 (208)
+|+.+++.+.++..
T Consensus 178 l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 178 AFETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999876543
No 17
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2.7e-32 Score=202.04 Aligned_cols=165 Identities=28% Similarity=0.429 Sum_probs=152.5
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
..+...+||+++|..++|| +++++..+.+...+.+|++.++..+.+.+++..+.+.+|||+|++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 3457789999999999999 56888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518 100 ACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 178 (208)
++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+++.+..++++++++.++++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999888764 89999999999998778889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy2518 179 RYLTTKCL 186 (208)
Q Consensus 179 ~~i~~~~~ 186 (208)
+.+++.+.
T Consensus 170 ~~l~~~i~ 177 (179)
T 1z0f_A 170 LEAAKKIY 177 (179)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99998875
No 18
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=9.9e-33 Score=202.95 Aligned_cols=163 Identities=26% Similarity=0.423 Sum_probs=143.6
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
++..+||+++|+.++|| +++++..+.+...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999 4677888889889999999998888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
++|||++++.+++.+..|+..+.+... +.|+++|+||+|+.+++.++.++++++++..+++++++||++|.|++++|+.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999999999998877654 7999999999999887889999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy2518 181 LTTKCL 186 (208)
Q Consensus 181 i~~~~~ 186 (208)
+.+.+.
T Consensus 163 l~~~~~ 168 (170)
T 1z08_A 163 LCKRMI 168 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
No 19
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=7.1e-32 Score=204.68 Aligned_cols=170 Identities=18% Similarity=0.227 Sum_probs=117.5
Q ss_pred ceeeeEEEecCceEEE--EEEeeecC--ccccccccccccceeeEEEEECCe--EEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRD--SFEAAHSWKMKVSIKRTIKECEGE--EVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~--~f~~~~~~t~~~~~~~~~~~~~~~--~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
...+||+++|..++|| +++++..+ .|...+.+|++.++..+.+.+++. .+.+.+|||+|++.+..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 5679999999999999 56778888 888899999998999999999887 89999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCEEEEEeCCCCCC-CCCCCHHHHHHHHHHhCCeEEEEecCC-CC
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG----EIPTVLVQNKIDLLD-QSVVAPEEADLLSRALGCRLMRTSVKE-DI 172 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~----~~piivvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~-~~ 172 (208)
|++++|||++++.+|+.+..|+..+....+ +.|+++|+||+|+.+ .+.++.+++.++++.+++++++|||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988754 789999999999987 788999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHhhhhhh
Q psy2518 173 NVNSIFRYLTTKCLSELRQQEE 194 (208)
Q Consensus 173 ~i~~~f~~i~~~~~~~~~~~~~ 194 (208)
|++++|+.+.+.+.+.......
T Consensus 178 gi~~l~~~i~~~~~~~~~~~~~ 199 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYEDKVA 199 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999998876655443
No 20
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-32 Score=208.74 Aligned_cols=166 Identities=20% Similarity=0.270 Sum_probs=139.8
Q ss_pred cccceeeeEEEecCceEEE--EEEeeec--CccccccccccccceeeEEEEECCeEEEEEEEeCCChhh-hcchhHhhhc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDR--DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE-FDAITKAYYR 96 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~~~~~~~~ 96 (208)
+.+...+||+++|++++|| +++++.. ..|...+ +++|.+++.+.+.+++..+.+.+|||+|++. +..+...+++
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~ 110 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ 110 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence 3567789999999999999 4566664 3445544 4577888889999999999999999999876 5556777889
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINV 174 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i 174 (208)
.+|++++|||++++.||+.+..|...+.+.. .+.|+++||||+|+.+.+.+..++++.++..++++|++|||++|.||
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 190 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999999999998887542 37999999999999877889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKCLSE 188 (208)
Q Consensus 175 ~~~f~~i~~~~~~~ 188 (208)
+++|+.+++.+...
T Consensus 191 ~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 191 KELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987543
No 21
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=206.31 Aligned_cols=161 Identities=18% Similarity=0.213 Sum_probs=142.2
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
-...+||+++|+.++|| +++++..+.|...+.+|++.++ ...+.+++..+.+++|||+|++++..+ ..+++++|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 35679999999999999 4678888999999999998655 566788999999999999999998875 6799999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec-CCCCCHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV-KEDINVNS 176 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa-~~~~~i~~ 176 (208)
++|||++++++|+.+..|+..+.+.. .+.|+++|+||+|+.+.+.++.+++.++++.+++++++||| ++|.||++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 99999999999999999999988764 48999999999999887889999999999999999999999 89999999
Q ss_pred HHHHHHHHHH
Q psy2518 177 IFRYLTTKCL 186 (208)
Q Consensus 177 ~f~~i~~~~~ 186 (208)
+|+.+++.+.
T Consensus 176 lf~~l~~~i~ 185 (187)
T 3c5c_A 176 VFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 22
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.1e-32 Score=204.23 Aligned_cols=163 Identities=22% Similarity=0.263 Sum_probs=148.2
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECC-eEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEG-EEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
...+||+++|+.++|| +++++..+.|...+.||+|.++..+.+.+++ ..+.+++|||+|++.+..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999 5678888999989999999999999999976 789999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC---CCC-EEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECG---EIP-TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p-iivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
++|||++++.+|+.+..|+..+..... ..| +++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 999999999999999999988877532 455 8999999999877889999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2518 178 FRYLTTKCLS 187 (208)
Q Consensus 178 f~~i~~~~~~ 187 (208)
|+.+.+.+.+
T Consensus 164 ~~~l~~~~~~ 173 (178)
T 2hxs_A 164 FQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.98 E-value=5.7e-32 Score=201.55 Aligned_cols=164 Identities=24% Similarity=0.272 Sum_probs=150.4
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.....+||+++|+.++|| +++++..+.|...+.+|++..+ ...+.+++..+.+++|||+|++.+..++..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 346689999999999999 5688888999999999998666 7888889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC-CCCCHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK-EDINVNSI 177 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~-~~~~i~~~ 177 (208)
+++|||++++.+|+.+..|+..+.+... +.|+++|+||+|+.+.+.+..++++++++.++++++++||+ +|.|++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence 9999999999999999999998876543 78999999999998888999999999999999999999999 99999999
Q ss_pred HHHHHHHHHH
Q psy2518 178 FRYLTTKCLS 187 (208)
Q Consensus 178 f~~i~~~~~~ 187 (208)
|+.+.+.+.+
T Consensus 173 ~~~l~~~i~~ 182 (183)
T 3kkq_A 173 FHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 24
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.98 E-value=2.4e-32 Score=200.33 Aligned_cols=162 Identities=52% Similarity=0.756 Sum_probs=150.9
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
+..+||+++|..++|| +++++..+.+...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4689999999999999 46778888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
+|||++++.+++.+..|+..+....++.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++|+.+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999999999988777899999999999987788889999999999999999999999999999999999
Q ss_pred HHHH
Q psy2518 183 TKCL 186 (208)
Q Consensus 183 ~~~~ 186 (208)
+.+.
T Consensus 163 ~~~~ 166 (168)
T 1z2a_A 163 EKHL 166 (168)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 25
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=3.8e-32 Score=201.76 Aligned_cols=168 Identities=25% Similarity=0.488 Sum_probs=144.7
Q ss_pred CccccceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc
Q psy2518 20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR 96 (208)
Q Consensus 20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~ 96 (208)
+.+.++..+||+++|..++|| +++++..+.|. ..+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++
T Consensus 3 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~ 82 (180)
T 2g6b_A 3 GVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYR 82 (180)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGG
T ss_pred CcccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHcc
Confidence 456678899999999999999 46777788885 468899999988888899999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 175 (208)
++|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+++.+..++++.+++.++++++++||++|.|++
T Consensus 83 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (180)
T 2g6b_A 83 DAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVD 162 (180)
T ss_dssp GCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999999999999999999988764 89999999999998888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCLS 187 (208)
Q Consensus 176 ~~f~~i~~~~~~ 187 (208)
++|+.+.+.+.+
T Consensus 163 ~l~~~l~~~~~~ 174 (180)
T 2g6b_A 163 LAFTAIAKELKR 174 (180)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 26
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.4e-32 Score=211.71 Aligned_cols=171 Identities=25% Similarity=0.421 Sum_probs=146.3
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
+..++..+||+++|+.++|| +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++++..++..+++.+
T Consensus 7 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 86 (223)
T 3cpj_B 7 GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGA 86 (223)
T ss_dssp ---CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTC
T ss_pred CCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccC
Confidence 34567899999999999999 5678888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
|++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.||+++
T Consensus 87 d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 87 VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKA 166 (223)
T ss_dssp CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999987755 7899999999999877889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy2518 178 FRYLTTKCLSELRQ 191 (208)
Q Consensus 178 f~~i~~~~~~~~~~ 191 (208)
|+.+++.+.+....
T Consensus 167 ~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 167 FEELINTIYQKVSK 180 (223)
T ss_dssp HHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHhhh
Confidence 99999998765443
No 27
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.98 E-value=2.2e-32 Score=209.36 Aligned_cols=171 Identities=24% Similarity=0.376 Sum_probs=154.0
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCe----------EEEEEEEeCCChhhhc
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGE----------EVRLMLWDTAGQEEFD 88 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~----------~~~l~i~Dt~g~~~~~ 88 (208)
..+++..+||+++|..++|| +++++..+.|...+.+|++.++..+.+.+++. .+.+.+|||+|++++.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 45678899999999999999 56788888999999999999988888888877 8999999999999999
Q ss_pred chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518 89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166 (208)
Q Consensus 89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 166 (208)
..+..+++.+|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+++.+..+++++++..+++++++|
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET 178 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence 999999999999999999999999999999998887655 378999999999998878889999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhhh
Q psy2518 167 SVKEDINVNSIFRYLTTKCLSELRQ 191 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~~~~~~~ 191 (208)
||++|.|++++|+.+.+.+.+...+
T Consensus 179 Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 179 SAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998876544
No 28
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.98 E-value=5.2e-32 Score=202.96 Aligned_cols=170 Identities=23% Similarity=0.369 Sum_probs=154.1
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCcccccccccccccee-eEEEEECCe---------EEEEEEEeCCChhhhcc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIK-RTIKECEGE---------EVRLMLWDTAGQEEFDA 89 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~---------~~~l~i~Dt~g~~~~~~ 89 (208)
+.++..+||+++|..++|| +++++..+.|...+.+|++.++. .+.+.+++. .+.+.+|||+|++.+..
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 4578899999999999999 56788888998899999998887 677777776 88999999999999999
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q psy2518 90 ITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS 167 (208)
Q Consensus 90 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 167 (208)
.+..+++.+|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+++.+..+++++++...+++++++|
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETS 165 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999999999999999999999887763 899999999999987788899999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhh
Q psy2518 168 VKEDINVNSIFRYLTTKCLSELRQ 191 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~~~~~~~~ 191 (208)
|++|.|++++|+.+.+.+.+....
T Consensus 166 a~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 166 AANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998876544
No 29
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.98 E-value=6.4e-32 Score=200.66 Aligned_cols=166 Identities=27% Similarity=0.399 Sum_probs=151.1
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.....+||+++|..++|| +++++..+.+...+.+|++.++....+.+++..+.+.+|||+|++++..++..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 346789999999999999 467888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
+++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999999999999888764 789999999999987788899999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2518 180 YLTTKCLSE 188 (208)
Q Consensus 180 ~i~~~~~~~ 188 (208)
.+.+.+...
T Consensus 168 ~l~~~~~~~ 176 (181)
T 2efe_B 168 EIARRLPRV 176 (181)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhc
Confidence 998877543
No 30
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.98 E-value=2.8e-32 Score=205.38 Aligned_cols=167 Identities=26% Similarity=0.473 Sum_probs=145.0
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
.......+||+++|..++|| +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++++..++..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 44567889999999999999 5788888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCCHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNS 176 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~ 176 (208)
|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..++++++++.. ++++++|||++|.|+++
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence 999999999999999999999988887765 7999999999999877888999999999885 78999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 177 IFRYLTTKCLS 187 (208)
Q Consensus 177 ~f~~i~~~~~~ 187 (208)
+|+.+.+.+.+
T Consensus 180 l~~~l~~~i~~ 190 (192)
T 2il1_A 180 IFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 31
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.98 E-value=2.4e-32 Score=203.22 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=149.2
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|..++|| +++++..+.|...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4579999999999999 4688888999999999998666 788889999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
+|||++++++|+.+..|+..+.+... +.|+++|+||+|+.+++.+..++++++++.++++++++||++|.|++++|+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999877654 7999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy2518 181 LTTKCLSEL 189 (208)
Q Consensus 181 i~~~~~~~~ 189 (208)
+++.+....
T Consensus 163 l~~~~~~~~ 171 (181)
T 3t5g_A 163 IILEAEKMD 171 (181)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 999887544
No 32
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.98 E-value=4.8e-32 Score=199.11 Aligned_cols=162 Identities=30% Similarity=0.512 Sum_probs=142.7
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|+.++|| +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999 467888889989999999999988999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
|||++++.+++.+..|+..+.+... +.|+++|+||+|+ ..+.+..+++.++++.++++++++||++|.|++++|+.+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999888765 7999999999999 4467888999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy2518 183 TKCLSE 188 (208)
Q Consensus 183 ~~~~~~ 188 (208)
+.+.++
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988654
No 33
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.98 E-value=1e-31 Score=201.14 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=142.7
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.-...+||+++|++++|| +++++..+.|...+.||.+ .+.+.+.+++..+.+++|||+|++.+. +++++|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 346789999999999999 4568889999999999854 345888899999999999999998876 7889999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCC--CCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDL--LDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVN 175 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl--~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~ 175 (208)
+++|||++++.+|+.+..|+..+..... +.|+++||||+|+ ...+.++.+++.+++..++ ++|++|||++|.||+
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence 9999999999999999999999988753 7899999999999 4568899999999999997 799999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2518 176 SIFRYLTTKCLSEL 189 (208)
Q Consensus 176 ~~f~~i~~~~~~~~ 189 (208)
++|+.+++.+.+..
T Consensus 169 ~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 169 RVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 34
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=2.5e-32 Score=205.52 Aligned_cols=167 Identities=25% Similarity=0.408 Sum_probs=151.0
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
.+.++..+||+++|..++|| +++++..+.|...+.+|+|.++..+.+.+++..+.+.+|||+|++++..++..+++.+
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 34578899999999999999 4678888889889999999998888888999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
|++++|||++++.+++.+..|+..+.+... +.|+++|+||+|+.+++.+..++++++++..++++++|||++|.|++++
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL 176 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence 999999999999999999999999988765 7999999999999877888999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2518 178 FRYLTTKCLS 187 (208)
Q Consensus 178 f~~i~~~~~~ 187 (208)
|+.+.+.+.+
T Consensus 177 ~~~l~~~i~~ 186 (192)
T 2fg5_A 177 FQGISRQIPP 186 (192)
T ss_dssp HHHHHHTCC-
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 35
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.98 E-value=5.9e-32 Score=198.73 Aligned_cols=161 Identities=22% Similarity=0.258 Sum_probs=132.1
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-hhHhhhcCCcEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-ITKAYYRGAQACVI 103 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-~~~~~~~~~d~ii~ 103 (208)
.+||+++|+.++|| +++++....+...+.++.+.+...+.+.+++..+.+.+|||+|++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 68999999999999 4677777777777777777888999999999999999999999998876 77788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
|||++++++|+.+..|+..+.+..+ +.|+++|+||+|+.+++.+..+++.++++..+++++++||++|.|++++|+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999988766 79999999999998888999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy2518 182 TTKCLS 187 (208)
Q Consensus 182 ~~~~~~ 187 (208)
++.+..
T Consensus 162 ~~~i~~ 167 (169)
T 3q85_A 162 VRQIRL 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 36
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.98 E-value=5.4e-32 Score=203.80 Aligned_cols=168 Identities=26% Similarity=0.365 Sum_probs=148.8
Q ss_pred CccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518 20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG 97 (208)
Q Consensus 20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 97 (208)
.++.....+||+++|..++|| +++++..+.|...+.+|++..+ ...+.+++..+.+++|||+|++++..++..++++
T Consensus 16 ~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 94 (194)
T 3reg_A 16 KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYAD 94 (194)
T ss_dssp -----CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred cccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEECCEEEEEEEEECCCcHHHHHHhHhhccC
Confidence 345667889999999999999 5788888999999999998655 4567889999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC--CCCCCHHHHHHHHHHhCCe-EEEEecCCCCC
Q psy2518 98 AQACVITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD--QSVVAPEEADLLSRALGCR-LMRTSVKEDIN 173 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~--~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~ 173 (208)
+|++++|||++++.+|+.+ ..|+..+.+..++.|+++|+||+|+.+ .+.+..+++.++++.+++. +++|||++|.|
T Consensus 95 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 95 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence 9999999999999999997 789998888777899999999999965 3788999999999999997 99999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKCLSE 188 (208)
Q Consensus 174 i~~~f~~i~~~~~~~ 188 (208)
++++|+.+++.+...
T Consensus 175 i~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 175 LNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988643
No 37
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.98 E-value=1.2e-31 Score=197.05 Aligned_cols=162 Identities=23% Similarity=0.380 Sum_probs=150.1
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
+.+.+||+++|..++|| +++++..+.|...+.+|.|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 46789999999999999 4678888999999999999998889999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
++|||++++.+++.+..|+..+..... ..|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 999999999999999999999887744 7899999999999887888999999999999999999999999999999999
Q ss_pred HHHHH
Q psy2518 181 LTTKC 185 (208)
Q Consensus 181 i~~~~ 185 (208)
+.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
No 38
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.98 E-value=7.6e-32 Score=197.89 Aligned_cols=161 Identities=26% Similarity=0.400 Sum_probs=148.9
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|..++|| +++++..+.+.+.+.+|++.++..+.+.+++..+.+.+|||+|++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 5679999999999999 46788889999999999999988899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
+|||++++.+++.+..|+..+.+... +.|+++|+||+|+.+++.+..+++.+++...+++++++||++|.|++++|+.+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887754 89999999999998778888999999999999999999999999999999999
Q ss_pred HHHH
Q psy2518 182 TTKC 185 (208)
Q Consensus 182 ~~~~ 185 (208)
.+.+
T Consensus 164 ~~~~ 167 (170)
T 1r2q_A 164 AKKL 167 (170)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8764
No 39
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.98 E-value=8.9e-32 Score=203.59 Aligned_cols=168 Identities=21% Similarity=0.308 Sum_probs=140.4
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
......+||+++|..++|| +++++..+.|...+.+|++. .+...+.+++..+.+++|||+|++++..++..+++++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFD-NFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSE-EEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccc-eeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 4567789999999999999 46778888899999999974 44677888999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEE
Q psy2518 100 ACVITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMR 165 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e 165 (208)
++++|||++++.+|+.+. .|+..+....++.|+++|+||+|+.+ .+.+..+++..++..+++ +|++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 999999999999999996 79999988777899999999999965 367889999999999998 9999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518 166 TSVKEDINVNSIFRYLTTKCLSELR 190 (208)
Q Consensus 166 ~Sa~~~~~i~~~f~~i~~~~~~~~~ 190 (208)
|||++|.|++++|+.+++.+.+...
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999876543
No 40
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.98 E-value=1.6e-31 Score=198.35 Aligned_cols=160 Identities=17% Similarity=0.211 Sum_probs=138.6
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|+.++|| +++++..+.|.+ +.||++ +.+.+.+.+++..+.+++|||+|+++ ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 3579999999999999 568888888887 889998 55578888999999999999999876 46788999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCC--CCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCCHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDL--LDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVN 175 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl--~~~~~v~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~ 175 (208)
+|||++++++|+.+..|+..+.... ++.|+++||||+|+ ...+.++.+++++++... ++++++|||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999999766655443 37899999999999 356789999999999887 5799999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy2518 176 SIFRYLTTKCLSELRQ 191 (208)
Q Consensus 176 ~~f~~i~~~~~~~~~~ 191 (208)
++|+.+++.+....++
T Consensus 158 ~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998876544
No 41
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=8.6e-32 Score=201.90 Aligned_cols=166 Identities=26% Similarity=0.393 Sum_probs=147.3
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc-chhHhhhcC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD-AITKAYYRG 97 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-~~~~~~~~~ 97 (208)
+......+||+++|..++|| +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++++. .++..+++.
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 44556789999999999999 467888899999999999999999999999999999999999999998 889999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC---C
Q psy2518 98 AQACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED---I 172 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~---~ 172 (208)
+|++++|||++++.+|+.+..|+..+.+.. .+.|+++|+||+|+.+.+.+..++++.++...+++++++||++| .
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 173 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence 999999999999999999999999998875 38999999999999887889999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTTKCL 186 (208)
Q Consensus 173 ~i~~~f~~i~~~~~ 186 (208)
|++++|+.+++.+.
T Consensus 174 ~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 174 HVEAIFMTLAHKLK 187 (189)
T ss_dssp CHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988764
No 42
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=1.1e-31 Score=199.18 Aligned_cols=164 Identities=26% Similarity=0.293 Sum_probs=148.7
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|..++|| +++++..+.|...+.+|++..+. +.+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 4679999999999999 46788888999999999986654 77888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
+|||++++.++..+..|+..+.+... +.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998855443 7999999999999887889999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy2518 181 LTTKCLSEL 189 (208)
Q Consensus 181 i~~~~~~~~ 189 (208)
+.+.+.+..
T Consensus 166 l~~~~~~~~ 174 (181)
T 2fn4_A 166 LVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999887644
No 43
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=3.5e-32 Score=205.81 Aligned_cols=172 Identities=25% Similarity=0.345 Sum_probs=137.8
Q ss_pred EeeccCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhH
Q psy2518 15 LWDTAGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITK 92 (208)
Q Consensus 15 ~~d~~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~ 92 (208)
.-+.+.+......+||+++|..++|| +++++..+.|...+.+|+|.++..+.+.+++..+.+.||||+|++.+..++.
T Consensus 16 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 95 (199)
T 2p5s_A 16 PRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAK 95 (199)
T ss_dssp ------------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHH
T ss_pred cccccCCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHH
Confidence 34445566677889999999999999 5678888899999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCC------CCCCCCHHHHHHHHHHhCCeEEE
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLL------DQSVVAPEEADLLSRALGCRLMR 165 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~------~~~~v~~~~~~~~~~~~~~~~~e 165 (208)
.+++.+|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+. ..+.+..++++.++...++++++
T Consensus 96 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 175 (199)
T 2p5s_A 96 SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCE 175 (199)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEE
Confidence 999999999999999999999999999998887664 79999999999995 45788899999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q psy2518 166 TSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 166 ~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
|||++|.|++++|+.+++.+.
T Consensus 176 ~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998874
No 44
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=2.9e-31 Score=195.95 Aligned_cols=164 Identities=23% Similarity=0.286 Sum_probs=135.9
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhh--hcchhHhhhcCCcE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--FDAITKAYYRGAQA 100 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--~~~~~~~~~~~~d~ 100 (208)
+..+||+++|+.++|| +++++..+.+...+ ++.|.++..+.+.+++..+.+.+|||+|++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 3578999999999999 46777777776554 4677888888899999999999999999988 56677888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 178 (208)
+++|||++++.+|+.+..|+..+.+.. .+.|+++|+||+|+.+.+.+..++++.++..+++++++|||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887653 279999999999998878899999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2518 179 RYLTTKCLSEL 189 (208)
Q Consensus 179 ~~i~~~~~~~~ 189 (208)
+.+++.+....
T Consensus 161 ~~l~~~~~~~~ 171 (175)
T 2nzj_A 161 EGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999886544
No 45
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=2.6e-31 Score=196.73 Aligned_cols=164 Identities=27% Similarity=0.438 Sum_probs=145.2
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.....+||+++|..++|| +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 456789999999999999 467888889999999999999989999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCCCH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENEC-----GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-ALGCRLMRTSVKEDINV 174 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~i 174 (208)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+. ++.+..+++.++++ ..+++++++||++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 999999999999999999999987665 378999999999997 57788899999998 55679999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKCLS 187 (208)
Q Consensus 175 ~~~f~~i~~~~~~ 187 (208)
+++|+.+++.+.+
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 46
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=9.5e-32 Score=199.12 Aligned_cols=165 Identities=28% Similarity=0.419 Sum_probs=150.1
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
......+||+++|..++|| +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++.+...+..+++.+|
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 3345679999999999999 46778888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518 100 ACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 178 (208)
++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+++.+..+++..++...+++++++||++|.|++++|
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887765 79999999999998778889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy2518 179 RYLTTKCL 186 (208)
Q Consensus 179 ~~i~~~~~ 186 (208)
+.+.+.+.
T Consensus 169 ~~l~~~~~ 176 (179)
T 2y8e_A 169 RRVAAALP 176 (179)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHh
Confidence 99987653
No 47
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.7e-31 Score=196.07 Aligned_cols=160 Identities=28% Similarity=0.412 Sum_probs=147.1
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|..++|| +++++..+.+...+.||++.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999 467888899998999999999888999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCC---CCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQ---SVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~---~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
|||++++.+++.+..|+..+..... +.|+++|+||+|+.+. +.+..+++++++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999887764 7999999999999654 77889999999999999999999999999999999
Q ss_pred HHHHHH
Q psy2518 180 YLTTKC 185 (208)
Q Consensus 180 ~i~~~~ 185 (208)
.+.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 988754
No 48
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.7e-31 Score=202.46 Aligned_cols=174 Identities=29% Similarity=0.511 Sum_probs=151.2
Q ss_pred eccCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhh
Q psy2518 17 DTAGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAY 94 (208)
Q Consensus 17 d~~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~ 94 (208)
+......++..+||+++|..++|| +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+
T Consensus 10 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 89 (213)
T 3cph_A 10 SSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89 (213)
T ss_dssp ----------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHH
T ss_pred ccCCCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHH
Confidence 334455678899999999999999 467788888988999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN 173 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 173 (208)
++.+|++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+ ..+.+..+++..++..++++++++||++|.|
T Consensus 90 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 168 (213)
T 3cph_A 90 YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 168 (213)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999999999999999888766 7899999999999 4577888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy2518 174 VNSIFRYLTTKCLSELRQ 191 (208)
Q Consensus 174 i~~~f~~i~~~~~~~~~~ 191 (208)
++++|+.+.+.+.+....
T Consensus 169 i~~l~~~l~~~~~~~~~~ 186 (213)
T 3cph_A 169 VNEIFFTLAKLIQEKIDS 186 (213)
T ss_dssp SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999988776543
No 49
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=4e-31 Score=200.35 Aligned_cols=167 Identities=27% Similarity=0.319 Sum_probs=150.4
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
......+||+++|..++|| +++++..+.|...+.+|.+.. +...+.+++..+.+.+|||+|++.+..++..+++.+|
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceE-EEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 3446689999999999999 467788888999999999844 4567788999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 100 ACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988765 8999999999999887889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2518 178 FRYLTTKCLSEL 189 (208)
Q Consensus 178 f~~i~~~~~~~~ 189 (208)
|+.+++.+....
T Consensus 168 ~~~l~~~i~~~~ 179 (206)
T 2bov_A 168 FFDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 999999987654
No 50
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.5e-31 Score=200.09 Aligned_cols=162 Identities=21% Similarity=0.313 Sum_probs=146.8
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
....+||+++|+.++|| +++++..+.|.+.+.+|++..+ .+.+.+++..+.+++|||+|++++..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 35789999999999999 5678888899999999998554 66778889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEe
Q psy2518 102 VITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTS 167 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~S 167 (208)
++|||++++++|+.+. .|+..+.+..++.|+++|+||+|+.+. +.++.+++.++++.+++ ++++||
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 9999999999999996 899999888778999999999999653 57889999999999998 999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy2518 168 VKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~~~ 186 (208)
|++|.|++++|+.+++.++
T Consensus 174 a~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998875
No 51
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=2.8e-32 Score=205.10 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=146.2
Q ss_pred cccceeeeEEEecCceEEE-EEEeeecCcccccc-----------ccccccceeeEEE-EECCeEEEEEEEeCCChhhhc
Q psy2518 22 EEFDAITKAYYRGAQACVI-TFSTIDRDSFEAAH-----------SWKMKVSIKRTIK-ECEGEEVRLMLWDTAGQEEFD 88 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~-----------~~t~~~~~~~~~~-~~~~~~~~l~i~Dt~g~~~~~ 88 (208)
......+||+++|+.++|| ++.+++.+.|...+ .||++.++..+.+ .+++..+.+++|||+|++++.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3457789999999999999 45577788888774 5688888877777 778899999999999999999
Q ss_pred chhHhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-
Q psy2518 89 AITKAYYRGAQACVITFSTI------DRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC- 161 (208)
Q Consensus 89 ~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~- 161 (208)
.++..+++++|++++|||++ +.++|+.+..|+..+.....+.|+++|+||+|+.+ .+..++++++++..++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~ 166 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKF 166 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCS
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCc
Confidence 99999999999999999999 66788888899988855445899999999999955 4889999999999999
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518 162 RLMRTSVKEDINVNSIFRYLTTKCLSELR 190 (208)
Q Consensus 162 ~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 190 (208)
++++|||++|.|++++|+.+++.+.+...
T Consensus 167 ~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 167 PVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred eEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887654
No 52
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.8e-31 Score=198.73 Aligned_cols=166 Identities=27% Similarity=0.432 Sum_probs=151.7
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.....+||+++|..++|| +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 446789999999999999 578888899999999999999988999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 178 (208)
+++|||++++.+++.+..|+..+.+... +.|+++|+||+|+. .+.+..+++.++++..+++++++||++|.|++++|
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF 169 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 9999999999999999999999987653 78999999999994 46788899999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2518 179 RYLTTKCLSEL 189 (208)
Q Consensus 179 ~~i~~~~~~~~ 189 (208)
+.+.+.+....
T Consensus 170 ~~l~~~~~~~~ 180 (195)
T 1x3s_A 170 EELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHTSG
T ss_pred HHHHHHHHhhh
Confidence 99999987543
No 53
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=4.1e-31 Score=193.67 Aligned_cols=160 Identities=21% Similarity=0.264 Sum_probs=120.2
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v 104 (208)
.+||+++|++++|| +++++.+..+ ..+.++.+..+ .+.+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 68999999999999 3555554444 35566777444 67778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 105 FSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
||++++++|+.+..|+..+.+.. ++.|+++|+||+|+.+.+.+..++++.++...++++++|||++|.|++++|+.+.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999999887754 3799999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy2518 183 TKCLSE 188 (208)
Q Consensus 183 ~~~~~~ 188 (208)
+.+..+
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 987653
No 54
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=9.3e-32 Score=204.83 Aligned_cols=164 Identities=21% Similarity=0.374 Sum_probs=145.7
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.....+||+++|+.++|| +++++..+.|...+.||++.++ .+.+.+++..+.+.+|||+|++.|..++..+++.+|+
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 346789999999999999 5788889999999999998665 5667788999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhC-CeEEEE
Q psy2518 101 CVITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALG-CRLMRT 166 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~ 166 (208)
+++|||++++.+|+.+ ..|+..+.+..++.|+++||||+|+.+ .+.++.++++++++.++ ++|++|
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 9999999999999999 789999988777899999999999964 36789999999999988 599999
Q ss_pred ecC-CCCCHHHHHHHHHHHHHH
Q psy2518 167 SVK-EDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 167 Sa~-~~~~i~~~f~~i~~~~~~ 187 (208)
||+ +|.||+++|+.+++.+++
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999998764
No 55
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=4.3e-31 Score=196.85 Aligned_cols=168 Identities=27% Similarity=0.318 Sum_probs=148.7
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
+......+||+++|..++|| +++++..+.|...+.+|.+.. ....+.+++..+.+.+|||+|++.+..++..+++.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (187)
T 2a9k_A 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90 (187)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceE-EEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence 44456789999999999999 467788888989999998844 456677899999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..+++.++++.++++++++||++|.|+++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 999999999999999999999999988776 799999999999987788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2518 177 IFRYLTTKCLSEL 189 (208)
Q Consensus 177 ~f~~i~~~~~~~~ 189 (208)
+|+.+.+.+....
T Consensus 171 l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 171 VFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
No 56
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=9.8e-32 Score=200.88 Aligned_cols=162 Identities=21% Similarity=0.383 Sum_probs=145.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|+.++|| +++++..+.|...+.||++..+ .+.+.+++..+.+.+|||+|++.|..++..+++.+|+++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 5679999999999999 5678888999999999998655 566778899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhC-CeEEEEec
Q psy2518 103 ITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALG-CRLMRTSV 168 (208)
Q Consensus 103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sa 168 (208)
+|||++++.+|+.+ ..|+..+.+..++.|+++|+||+|+.+ .+.++.+++.++++.++ ++|++|||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999999999998 789999888777899999999999964 26789999999999988 59999999
Q ss_pred C-CCCCHHHHHHHHHHHHHH
Q psy2518 169 K-EDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 169 ~-~~~~i~~~f~~i~~~~~~ 187 (208)
+ ++.|++++|+.+++.+++
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 689999999999988763
No 57
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=8.4e-32 Score=204.03 Aligned_cols=167 Identities=23% Similarity=0.296 Sum_probs=145.1
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
....+||+++|..++|| +++++..+.|...+.+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 35689999999999999 5788889999999999998665 77777888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+++.+..+++..+++..+++++++||++|.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999887644 789999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy2518 180 YLTTKCLSELRQ 191 (208)
Q Consensus 180 ~i~~~~~~~~~~ 191 (208)
.+++.+.+....
T Consensus 180 ~l~~~i~~~~~~ 191 (201)
T 3oes_A 180 KVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHhhhhh
Confidence 999998765544
No 58
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=4.7e-31 Score=193.11 Aligned_cols=160 Identities=28% Similarity=0.341 Sum_probs=143.0
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|..++|| +++++..+.|...+.+|.+.. ....+.+++..+.+.+|||+|++++..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceE-EEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999 467788888988999998854 45667789999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
|||++++++++.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999999988765 79999999999998778889999999999999999999999999999999999
Q ss_pred HHHHH
Q psy2518 182 TTKCL 186 (208)
Q Consensus 182 ~~~~~ 186 (208)
.+.+.
T Consensus 162 ~~~i~ 166 (168)
T 1u8z_A 162 MREIR 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 59
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=1.4e-30 Score=196.35 Aligned_cols=164 Identities=20% Similarity=0.255 Sum_probs=136.8
Q ss_pred ceeeeEEEecCceEEE--EEEeeec--CccccccccccccceeeEEEEECCeEEEEEEEeCCChhh-hcchhHhhhcCCc
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDR--DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE-FDAITKAYYRGAQ 99 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~~~~~~~~~~d 99 (208)
...+||+++|++++|| +++++.+ ..|.+.+. ++|.+++.+.+.+++..+.+.+|||+|++. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 3579999999999999 4566663 34555544 577888888899999999999999999876 5567788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 100 ACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
++++|||+++++||+.+..|+..+.+.. ++.|+++|+||+|+.+.+.+..+++..++..++++|++|||++|.||+++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988877653 37899999999999777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2518 178 FRYLTTKCLSEL 189 (208)
Q Consensus 178 f~~i~~~~~~~~ 189 (208)
|+.+++.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886554
No 60
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=4.4e-31 Score=193.40 Aligned_cols=159 Identities=26% Similarity=0.364 Sum_probs=143.9
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|..++|| +++++..+.+.+.+.+|++..+ .+.+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999 4678888899999999998554 5677788899999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
|||++++.+|+.+..|+..+.+... +.|+++|+||+|+.+++.+..+++..+++.+ +++++++||++|.|++++|+.
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 9999999999999999988877643 7999999999999887888999999999988 789999999999999999999
Q ss_pred HHHHH
Q psy2518 181 LTTKC 185 (208)
Q Consensus 181 i~~~~ 185 (208)
+.+.+
T Consensus 161 l~~~i 165 (167)
T 1c1y_A 161 LVRQI 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 61
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=4e-31 Score=196.24 Aligned_cols=166 Identities=25% Similarity=0.410 Sum_probs=134.7
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
....+||+++|..++|| +++++..+.|...+.+|++.++....+.++ +..+.+.+|||+|++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 46689999999999999 467888899999999999999999988887 677899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-----CCCCEEEEEeCCCCC-CCCCCCHHHHHHHHH-HhCCeEEEEecCCCCC
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENEC-----GEIPTVLVQNKIDLL-DQSVVAPEEADLLSR-ALGCRLMRTSVKEDIN 173 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~piivvgnK~Dl~-~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~ 173 (208)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+. ..+.+..+++.+++. ..++++++|||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 999999999999999999999887765 378999999999994 446788899999988 4567999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy2518 174 VNSIFRYLTTKCLSEL 189 (208)
Q Consensus 174 i~~~f~~i~~~~~~~~ 189 (208)
++++|+.+.+.+.++.
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 165 VDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887643
No 62
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=9.1e-31 Score=198.65 Aligned_cols=167 Identities=25% Similarity=0.398 Sum_probs=149.7
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
.+..+||+++|..++|| +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 46789999999999999 4678888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhc-----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCCCHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENEC-----GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-ALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~ 175 (208)
++|||++++.+|+.+..|+..+.... .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 99999999999999999999887665 378999999999997 46778888888888 567899999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy2518 176 SIFRYLTTKCLSELRQ 191 (208)
Q Consensus 176 ~~f~~i~~~~~~~~~~ 191 (208)
++|+.+++.+.+....
T Consensus 164 ~l~~~l~~~~~~~~~~ 179 (207)
T 1vg8_A 164 QAFQTIARNALKQETE 179 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998876643
No 63
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=7.6e-32 Score=205.68 Aligned_cols=165 Identities=27% Similarity=0.403 Sum_probs=144.5
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|+.++|| ++.++..+.|...+.||++.. +...+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCC-EEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcccee-EEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4579999999999999 467888899999999999854 4667778999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCC--------CCCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2518 103 ITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQS--------VVAPEEADLLSRALGC-RLMRTSVKEDI 172 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~--------~v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 172 (208)
+|||++++++|+.+. .|+..+....++.|+++|+||+|+.+.+ .+..+++.+++..+++ +|++|||++|.
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ 165 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence 999999999999996 8999998877789999999999996543 3578899999999997 99999999999
Q ss_pred CHHHHHHHHHHHHHHHhh
Q psy2518 173 NVNSIFRYLTTKCLSELR 190 (208)
Q Consensus 173 ~i~~~f~~i~~~~~~~~~ 190 (208)
|++++|+.+++.+.....
T Consensus 166 gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 166 NVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp THHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHhhhhh
Confidence 999999999999876543
No 64
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=1.6e-30 Score=196.25 Aligned_cols=164 Identities=22% Similarity=0.381 Sum_probs=147.8
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeE----------------------------
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEE---------------------------- 73 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~---------------------------- 73 (208)
.+..+||+++|..++|| +++++..+.|.+.+.+|++.++..+.+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 35689999999999999 568888899999999999999988888888766
Q ss_pred ---------EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC
Q psy2518 74 ---------VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ 144 (208)
Q Consensus 74 ---------~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~ 144 (208)
+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+....+ .|+++|+||+| ..+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D-~~~ 161 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKID-KNK 161 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTT-CC-
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCC-ccc
Confidence 8999999999999999999999999999999999999999999999999987665 99999999999 555
Q ss_pred CCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 145 SVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 145 ~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
+.+..+++++++...+++++++||++|.|++++|+.+.+.+.++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 788899999999999999999999999999999999999887643
No 65
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=4.1e-31 Score=196.95 Aligned_cols=162 Identities=23% Similarity=0.370 Sum_probs=145.6
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
+..+||+++|..++|| +++++..+.|...+.+|++. .+...+.+++..+.+++|||+|++++..++..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccc-eeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4579999999999999 46777788899999999974 45677788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEec
Q psy2518 103 ITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSV 168 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa 168 (208)
+|||++++.+|+.+. .|+..+.+..++.|+++|+||+|+.+. +.+..+++..+++..++ ++++|||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 999999999999996 799998887778999999999998653 67889999999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy2518 169 KEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 169 ~~~~~i~~~f~~i~~~~~~ 187 (208)
++|.|++++|+.+.+.+..
T Consensus 162 ~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHhc
Confidence 9999999999999998754
No 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=3.6e-30 Score=192.28 Aligned_cols=164 Identities=26% Similarity=0.338 Sum_probs=145.7
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|..++|| +++++..+.+...+.+|.+ +.....+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 578999999999999 4678888889999999986 6667778889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+ +.+..+++..++..++++++++||++|.|++++|+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887654 799999999999964 6788899999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy2518 182 TTKCLSELRQ 191 (208)
Q Consensus 182 ~~~~~~~~~~ 191 (208)
.+.+......
T Consensus 161 ~~~~~~~~~~ 170 (189)
T 4dsu_A 161 VREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 9998766544
No 67
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=7.9e-31 Score=191.75 Aligned_cols=160 Identities=22% Similarity=0.335 Sum_probs=145.5
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|..++|| +++++..+.|...+.+|++ +...+.+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 368999999999999 4577888899999999987 4557788889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
|||++++.+++.+..|+..+.+... +.|+++|+||+|+.+++.+..++++.+++.++++++++||++|.|++++|+.+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 9999999999999999988877654 79999999999998778889999999999999999999999999999999999
Q ss_pred HHHHH
Q psy2518 182 TTKCL 186 (208)
Q Consensus 182 ~~~~~ 186 (208)
.+.+.
T Consensus 161 ~~~~~ 165 (167)
T 1kao_A 161 VRQMN 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98764
No 68
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=6.4e-31 Score=201.23 Aligned_cols=164 Identities=22% Similarity=0.385 Sum_probs=126.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|+.++|| +++++..+.|...+.+|++. .+...+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFE-RYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCE-EEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccce-eEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999 46788888898889999874 44667788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEec
Q psy2518 103 ITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSV 168 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa 168 (208)
+|||++++.+|+.+. .|+..+.+..++.|+++|+||+|+.+. +.++.+++..+++..++ ++++|||
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 999999999999996 799999887778999999999999654 37888999999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q psy2518 169 KEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 169 ~~~~~i~~~f~~i~~~~~~~~ 189 (208)
++|.|++++|+.+++.+++..
T Consensus 191 ~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999987543
No 69
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=4.1e-31 Score=203.02 Aligned_cols=168 Identities=24% Similarity=0.384 Sum_probs=151.4
Q ss_pred CccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518 20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG 97 (208)
Q Consensus 20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 97 (208)
.+......+||+++|..++|| ++++++.+.|...+.+|+|.++....+.+++..+.+.+|||+|++.+..++..++++
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 345567889999999999999 467778899999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 98 AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
+|++++|||++++.+|+.+..|+..+.+..++.|+++|+||+|+.+.+. . ++...+++..++++++|||++|.|++++
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999999999999998887899999999999966443 3 2566788889999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2518 178 FRYLTTKCLSEL 189 (208)
Q Consensus 178 f~~i~~~~~~~~ 189 (208)
|+.+.+.+....
T Consensus 166 ~~~l~~~l~~~~ 177 (221)
T 3gj0_A 166 FLWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHHhCc
Confidence 999999987654
No 70
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.2e-30 Score=196.89 Aligned_cols=163 Identities=23% Similarity=0.251 Sum_probs=146.3
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|..++|| +++++..+.|...+.+|++..+ .+.+.+++..+.+.+|||+|++. ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4579999999999999 5688888999999999998554 56678899999999999999988 778889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC-CHHHHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI-NVNSIFR 179 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~-~i~~~f~ 179 (208)
+|||++++++|+.+..|+..+..... +.|+++|+||+|+.+.+.++.+++.++++.+++++++|||++|. |++++|+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 99999999999999999998887643 89999999999998878899999999999999999999999999 9999999
Q ss_pred HHHHHHHHHh
Q psy2518 180 YLTTKCLSEL 189 (208)
Q Consensus 180 ~i~~~~~~~~ 189 (208)
.+++.+.+..
T Consensus 184 ~l~~~i~~~~ 193 (196)
T 2atv_A 184 ELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999987543
No 71
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.3e-32 Score=208.20 Aligned_cols=164 Identities=28% Similarity=0.492 Sum_probs=141.9
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
.++..+||+++|..++|| +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 457789999999999999 568888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
+++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..++++.++..++++++++||++|.|++++|+
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~ 188 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 188 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999999999987765 799999999999988788888888999999999999999999999999999
Q ss_pred HHHHHHH
Q psy2518 180 YLTTKCL 186 (208)
Q Consensus 180 ~i~~~~~ 186 (208)
.+++.+.
T Consensus 189 ~l~~~l~ 195 (199)
T 3l0i_B 189 TMAAEIK 195 (199)
T ss_dssp HHTTTTT
T ss_pred HHHHHHH
Confidence 9987764
No 72
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=4e-30 Score=194.87 Aligned_cols=161 Identities=27% Similarity=0.414 Sum_probs=145.6
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|..++|| +++++..+.|...+.||++.++. ..+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 4578999999999999 56888889999999999987664 45778999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEec
Q psy2518 103 ITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSV 168 (208)
Q Consensus 103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa 168 (208)
+|||++++.+|+.+ ..|+..+....++.|+++|+||+|+.+. +.+..+++..++...++ ++++|||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence 99999999999999 7898888887778999999999999664 56888999999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy2518 169 KEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 169 ~~~~~i~~~f~~i~~~~~ 186 (208)
++|.|++++|+.+.+.++
T Consensus 182 ~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 182 KTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998875
No 73
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=1.6e-30 Score=199.10 Aligned_cols=169 Identities=20% Similarity=0.263 Sum_probs=145.7
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRG 97 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 97 (208)
+++....+||+++|..++|| +++++..+.|...+.+|++.......+... +..+.+.+|||+|++.+..++..+++.
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG 84 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence 45567789999999999999 578888899999999999987777666554 455899999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 98 AQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
+|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..++...++++++|||++|.|+++
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 85 ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL 164 (218)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence 9999999999999999999999999988877 699999999999988778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2518 177 IFRYLTTKCLSEL 189 (208)
Q Consensus 177 ~f~~i~~~~~~~~ 189 (208)
+|+.+++.+....
T Consensus 165 l~~~l~~~~~~~~ 177 (218)
T 4djt_A 165 PFLHLARIFTGRP 177 (218)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHhccc
Confidence 9999999886543
No 74
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=1.3e-31 Score=199.23 Aligned_cols=161 Identities=25% Similarity=0.408 Sum_probs=126.8
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|+.++|| +++++..+.|...+.||++..+ ...+.+++..+.+++|||+|++++..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 5679999999999999 4677888889999999998554 444667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCCC----------CCHHHHHHHHHHhCC-eEEEEecCC
Q psy2518 103 ITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQSV----------VAPEEADLLSRALGC-RLMRTSVKE 170 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~ 170 (208)
+|||++++.+|+.+. .|+..+.+..++.|+++|+||+|+.+.+. +..+++.++++.+++ ++++|||++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 999999999999996 79999988777899999999999865433 578899999999997 999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy2518 171 DINVNSIFRYLTTKCL 186 (208)
Q Consensus 171 ~~~i~~~f~~i~~~~~ 186 (208)
|.|++++|+.+++.++
T Consensus 165 ~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 75
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.7e-30 Score=194.15 Aligned_cols=162 Identities=26% Similarity=0.402 Sum_probs=139.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|..++|| +++++..+.|...+.||++.++. ..+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 4568999999999999 56788889999999999986554 44778999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEec
Q psy2518 103 ITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSV 168 (208)
Q Consensus 103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa 168 (208)
+|||++++.+|+.+ ..|+..+....++.|+++|+||+|+.+. +.+..+++..++...++ ++++|||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99999999999999 7899888887778999999999999654 56888999999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy2518 169 KEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 169 ~~~~~i~~~f~~i~~~~~~ 187 (208)
++|.|++++|+.+.+.+++
T Consensus 182 ~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 76
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.96 E-value=1.6e-30 Score=197.56 Aligned_cols=160 Identities=22% Similarity=0.361 Sum_probs=141.1
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|..++|| ++.++..+.|...+.+|++ +.....+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 5579999999999999 4677888999999999997 566777888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEEec
Q psy2518 103 ITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQS------------VVAPEEADLLSRALGC-RLMRTSV 168 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~------------~v~~~~~~~~~~~~~~-~~~e~Sa 168 (208)
+|||++++.+|+.+. .|+..+....++.|+++|+||+|+.+.+ .+..+++..+++..++ ++++|||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 999999999999996 8999998887789999999999986543 4888999999999997 6999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy2518 169 KEDINVNSIFRYLTTKC 185 (208)
Q Consensus 169 ~~~~~i~~~f~~i~~~~ 185 (208)
++|.|++++|+.+.+.+
T Consensus 187 ~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 187 LTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTCTTHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998754
No 77
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=4.2e-29 Score=187.18 Aligned_cols=163 Identities=24% Similarity=0.286 Sum_probs=135.8
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|..++|| +++++..+.+...+.+|.+. .....+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4679999999999999 46777788888888888874 44577788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
+|||++++.+++.+..|+..+..... +.|+++|+||+|+.+ +.+..++++++++.++++++++||++|.|++++|+.
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887765 799999999999966 677889999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy2518 181 LTTKCLSEL 189 (208)
Q Consensus 181 i~~~~~~~~ 189 (208)
+.+.+.+..
T Consensus 177 l~~~~~~~~ 185 (190)
T 3con_A 177 LVREIRQYR 185 (190)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999887543
No 78
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.96 E-value=3.4e-29 Score=182.71 Aligned_cols=159 Identities=26% Similarity=0.339 Sum_probs=143.1
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|..++|| +++++..+.+...+.+|.+ +.....+.+++..+.+.+|||+|++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 358999999999999 4677778888888889887 4446777889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
|||++++.+++.+..|+..+..... +.|+++|+||+|+.+ +.+..+++.++++.++++++++||++|.|++++|+.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999999887765 799999999999966 6678899999999999999999999999999999999
Q ss_pred HHHHH
Q psy2518 182 TTKCL 186 (208)
Q Consensus 182 ~~~~~ 186 (208)
.+.+.
T Consensus 160 ~~~~~ 164 (166)
T 2ce2_X 160 VREIR 164 (166)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98874
No 79
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7.9e-30 Score=187.42 Aligned_cols=159 Identities=23% Similarity=0.284 Sum_probs=141.7
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
..+||+++|..++|| +++++..+.|...+.+|++.. ....+..++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE-EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcccc-EEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 368999999999999 467888888988889998744 45667788899999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc---CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 104 TFSTIDRDSFEAAHSWKMKVENEC---GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~---~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
|||++++.+++.+..|+..+.+.. ++.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+.
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999999999988887654 37899999999999877888899999999999999999999999999999999
Q ss_pred HHHHH
Q psy2518 181 LTTKC 185 (208)
Q Consensus 181 i~~~~ 185 (208)
+.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98764
No 80
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.96 E-value=1.3e-28 Score=186.28 Aligned_cols=166 Identities=25% Similarity=0.434 Sum_probs=148.4
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
++..+|++++|+.|+|| +++++.+..|...+.||+|.++....+.++|..+.+.+|||+|++++...+..+++.++++
T Consensus 2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 35689999999999999 4677888889889999999999899999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 180 (208)
++|||++++.+++++..|+..+..... +.|+++++||+|+.+.+.+..+++..++...++.++++||+++.|++++|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999999899988766543 7899999999999877888889999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy2518 181 LTTKCLSEL 189 (208)
Q Consensus 181 i~~~~~~~~ 189 (208)
+.+.+.+..
T Consensus 162 l~~~~~~~~ 170 (199)
T 2f9l_A 162 ILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=1.1e-29 Score=191.40 Aligned_cols=167 Identities=13% Similarity=0.170 Sum_probs=128.0
Q ss_pred cCccccceeeeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhh
Q psy2518 19 AGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYY 95 (208)
Q Consensus 19 ~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~ 95 (208)
+.........||+++|..++|| +++++..+.|.. .+.+|+|.. ... +++..+.+.+|||+|++.+..++..++
T Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 84 (199)
T 4bas_A 9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VET--FEKGRVAFTVFDMGGAKKFRGLWETYY 84 (199)
T ss_dssp -------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEE--EEETTEEEEEEEECCSGGGGGGGGGGC
T ss_pred ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEE--EEeCCEEEEEEECCCCHhHHHHHHHHH
Confidence 3456677889999999999999 578888999998 889999833 233 345567899999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc---------CCCCEEEEEeCCCCCCCCCCCHHHH-HHH-----HHHhC
Q psy2518 96 RGAQACVITFSTIDRDSFEAAHSWKMKVENEC---------GEIPTVLVQNKIDLLDQSVVAPEEA-DLL-----SRALG 160 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---------~~~piivvgnK~Dl~~~~~v~~~~~-~~~-----~~~~~ 160 (208)
+.+|++++|||++++++|..+..|+..+.+.. .+.|+++|+||+|+.+.. ..++. ..+ ++..+
T Consensus 85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHP 162 (199)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSC
T ss_pred hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCe
Confidence 99999999999999999999999998886652 278999999999996542 22222 211 13356
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q psy2518 161 CRLMRTSVKEDINVNSIFRYLTTKCLSELRQ 191 (208)
Q Consensus 161 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~ 191 (208)
+++++|||++|.||+++|+.+++.+.+..+.
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 163 FVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred eEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999998766433
No 82
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7.7e-29 Score=186.76 Aligned_cols=162 Identities=22% Similarity=0.277 Sum_probs=142.9
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|..++|| +++++..+.|...+.+|++.. +...+..++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT-YRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE-EEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc-eeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 4579999999999999 468888889988899998844 4566778899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc---CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENEC---GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 179 (208)
+|||++++.+++.+..|+..+.+.. ++.|+++|+||+|+.+ +.+..+++..++..++++++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 9999999999999988887776654 2689999999999965 67788999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2518 180 YLTTKCLSE 188 (208)
Q Consensus 180 ~i~~~~~~~ 188 (208)
.+++.+..+
T Consensus 164 ~l~~~~~~~ 172 (199)
T 2gf0_A 164 ELLTLETRR 172 (199)
T ss_dssp HHHHHCSSS
T ss_pred HHHHHHhhh
Confidence 999876543
No 83
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1.7e-30 Score=194.34 Aligned_cols=161 Identities=15% Similarity=0.232 Sum_probs=122.0
Q ss_pred eeeEEEecCceEEE--EEEeeec--CccccccccccccceeeEEEEE---CCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDR--DSFEAAHSWKMKVSIKRTIKEC---EGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~--~~f~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
.+||+++|++|+|| +++++.. ..|...+.+|+|.++..+.+.+ ++..+.+++|||+|+++|..+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 47999999999999 3566655 3677788999998887776655 356789999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC---HHHHHHHHHHhCCe----EEEEecCCC
Q psy2518 100 ACVITFSTIDR-DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA---PEEADLLSRALGCR----LMRTSVKED 171 (208)
Q Consensus 100 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~---~~~~~~~~~~~~~~----~~e~Sa~~~ 171 (208)
++++|||++++ .+|+.+..|+..+....++.|+++||||+|+.+.+.+. .+.++.+++.++++ ++++||++|
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 99999999997 58999999999988776689999999999996644432 34455666667776 999999999
Q ss_pred C-CHHHHHHHHHHHHHH
Q psy2518 172 I-NVNSIFRYLTTKCLS 187 (208)
Q Consensus 172 ~-~i~~~f~~i~~~~~~ 187 (208)
. +++++++.+.+.+..
T Consensus 162 ~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 162 SDALAKLRKTIINESLN 178 (184)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhc
Confidence 7 999999998887754
No 84
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.4e-30 Score=197.71 Aligned_cols=160 Identities=23% Similarity=0.363 Sum_probs=141.5
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|..++|| +++++..+.|...+.+|++. .....+.+++..+.+++|||+|++++...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4579999999999999 56888889999999999974 44666778888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEEec
Q psy2518 103 ITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQS------------VVAPEEADLLSRALGC-RLMRTSV 168 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~------------~v~~~~~~~~~~~~~~-~~~e~Sa 168 (208)
+|||++++.+|+.+. .|+..+....++.|+++|+||+|+.+.+ .+..+++..+++..++ ++++|||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 999999999999986 8988888766689999999999996543 6677888889998898 9999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy2518 169 KEDINVNSIFRYLTTKC 185 (208)
Q Consensus 169 ~~~~~i~~~f~~i~~~~ 185 (208)
++|.|++++|+.+++.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999998765
No 85
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=1e-29 Score=191.89 Aligned_cols=162 Identities=16% Similarity=0.166 Sum_probs=127.9
Q ss_pred ccccceeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEE--E-CCeEEEEEEEeCCChhhhcchh---Hh
Q psy2518 21 QEEFDAITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKE--C-EGEEVRLMLWDTAGQEEFDAIT---KA 93 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~--~-~~~~~~l~i~Dt~g~~~~~~~~---~~ 93 (208)
...-.+.+||+++|++++|| ++..++.+.|... +|++.++..+.+. + ++..+.+++|||+|+++|.... ..
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 34457789999999999999 4444455666655 5666565554444 3 3677899999999999998876 89
Q ss_pred hhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-------CCCCCHHHHHHHHH----HhC
Q psy2518 94 YYRGAQACVITFSTIDR--DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD-------QSVVAPEEADLLSR----ALG 160 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~-------~~~v~~~~~~~~~~----~~~ 160 (208)
+++++|++++|||++++ +++..+..|+..+.+..++.|+++||||+|+.+ .+.+..+++..+++ ..+
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 99999999999999997 778888888888866666899999999999754 35666777888888 678
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 161 CRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 161 ~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
++|++|||++ .||+++|..+++.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999998865
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.95 E-value=1.7e-28 Score=185.68 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=121.3
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|++++|| +++++..+.|. .+.||++.. ...+.+++ +.+++|||+|++.++.++..+++++|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 3467999999999999 46777777764 578888765 45667776 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------hCCeE
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-----------------LGCRL 163 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~ 163 (208)
+|||++++++|+.+..|+..+.+.. .+.|+++|+||+|+.+ .++.+++.+++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999999887653 3799999999999954 5778887777653 23589
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q psy2518 164 MRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 164 ~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
++|||++|.|++++|+++.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998764
No 87
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=2.4e-28 Score=197.92 Aligned_cols=163 Identities=21% Similarity=0.362 Sum_probs=146.2
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
....+||+++|..++|| +++++..+.|...+.+|++ +.....+.+++..+.+++|||+|++.+...+..+++.+|++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 230 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence 34568999999999999 4677778889989999997 44567778899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEe
Q psy2518 102 VITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTS 167 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~S 167 (208)
++|||++++.+|+.+. .|+..+....++.|+++|+||+|+.+. +.++.+++..+++..++ ++++||
T Consensus 231 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 231 LICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 9999999999999986 799888887778999999999998543 67899999999999998 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q psy2518 168 VKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~~~~ 187 (208)
|++|.|++++|+.+++.++.
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988764
No 88
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.95 E-value=7.1e-28 Score=181.24 Aligned_cols=165 Identities=26% Similarity=0.462 Sum_probs=149.1
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA 98 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 98 (208)
+++++..+|++++|++|+|| +++++....+...+.||++.++....+.+++..+.+++|||+|++++...+..+++.+
T Consensus 23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence 34567789999999999999 4677778888889999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518 99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 177 (208)
+++++|||.++..+|+++..|+..+.+... +.|+++++||+|+.+.+.+..+++.+++...++.++++||+++.|++++
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 182 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999889887766544 7899999999999877788899999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy2518 178 FRYLTTKC 185 (208)
Q Consensus 178 f~~i~~~~ 185 (208)
|+.+.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 89
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.95 E-value=3.7e-29 Score=182.91 Aligned_cols=153 Identities=14% Similarity=0.208 Sum_probs=120.3
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 105 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~ 105 (208)
+||+++|++++|| +++++..+.|.. +.||++. ....+.. ..+.+++|||+|++.+..++..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 5899999999999 467777777764 6788873 3344443 4577999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCCHHHHH
Q psy2518 106 STIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLS-----RALGCRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 106 d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~f 178 (208)
|++++++|+.+..|+..+.... ++.|+++|+||+|+.+. ...++..... ...++++++|||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999999998887643 37999999999999553 2223222211 1134579999999999999999
Q ss_pred HHHHHHHHH
Q psy2518 179 RYLTTKCLS 187 (208)
Q Consensus 179 ~~i~~~~~~ 187 (208)
+.+.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987643
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.95 E-value=5e-28 Score=181.89 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=126.5
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|++++|| +++++..+.|. .+.||++.. ...+.+++ +.+.+|||+|++.++.++..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 4567999999999999 46777777775 577888753 56667776 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH------------hCCeEEEEec
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRA------------LGCRLMRTSV 168 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~------------~~~~~~e~Sa 168 (208)
+|||++++++|+.+..|+..+.+.. .+.|+++|+||+|+.+ .++.+++.+.+.. .++++++|||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999998887643 3799999999999965 5677777665543 3458999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy2518 169 KEDINVNSIFRYLTTK 184 (208)
Q Consensus 169 ~~~~~i~~~f~~i~~~ 184 (208)
++|.|++++|+.+.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=9.1e-28 Score=179.62 Aligned_cols=156 Identities=12% Similarity=0.162 Sum_probs=125.6
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
+..+||+++|..++|| +++++..+.|. .+.||+|.. ...+.+++ +.+.+|||+|++++..++..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 4579999999999999 46777778887 788898744 45555655 77999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~ 175 (208)
+|||++++++|+.+..|+..+.+.. .+.|+++|+||+|+.+ ....++..+... ..++++++|||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999999887763 4799999999999954 344555544432 235689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCLS 187 (208)
Q Consensus 176 ~~f~~i~~~~~~ 187 (208)
++|+.+++.+..
T Consensus 167 ~l~~~l~~~~~~ 178 (187)
T 1zj6_A 167 QGLEWMMSRLKI 178 (187)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH
Confidence 999999987643
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=178.75 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=128.8
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCc-cccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDS-FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ 100 (208)
....+||+++|..++|| +++++..+. |...+.+|++ +....+.+++ +.+.+|||+|++.+..++..+++++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 45689999999999999 467777777 6778889987 4456666665 679999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCC
Q psy2518 101 CVITFSTIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKED 171 (208)
Q Consensus 101 ii~v~d~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~ 171 (208)
+++|||++++.+|+.+..|+..+.+.. .+.|+++|+||+|+.+ ....++..+.+. ..++++++|||++|
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 999999999999999999998887653 3789999999999954 345566665553 23568999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTKCL 186 (208)
Q Consensus 172 ~~i~~~f~~i~~~~~ 186 (208)
.|++++|+.+.+.+.
T Consensus 172 ~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQ 186 (190)
T ss_dssp BTHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988764
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.95 E-value=1.4e-28 Score=185.25 Aligned_cols=155 Identities=13% Similarity=0.192 Sum_probs=118.8
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
+..+||+++|+.++|| +++++..+.|. .+.||++ +....+..+ .+.+.+|||+|++++..++..+++++|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4579999999999999 46777778876 4678887 334445554 477999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHH-H----HHhCCeEEEEecCCCCCHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLL-S----RALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~-~----~~~~~~~~e~Sa~~~~~i~ 175 (208)
+|||++++++|+.+..|+..+.+.. .+.|+++|+||+|+.+. ...++..+. . ...++++++|||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999999998887643 37999999999999553 222322221 1 1224579999999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCL 186 (208)
Q Consensus 176 ~~f~~i~~~~~ 186 (208)
++|+.+++.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.95 E-value=9.6e-28 Score=178.93 Aligned_cols=156 Identities=15% Similarity=0.213 Sum_probs=123.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|++++|| +++++..+.+ ..+.||+|. ..+.+.++ .+.+++|||+|++.++..+..+++++|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe--EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4579999999999999 4566666644 567889883 34555665 467999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCCHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLS-----RALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~ 175 (208)
+|||++++++|+.+..|+..+.+.. .+.|+++|+||+|+.+.+ ..++..+.. ...++++++|||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 9999999999999999988876542 379999999999996543 233332221 1234579999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCLS 187 (208)
Q Consensus 176 ~~f~~i~~~~~~ 187 (208)
++|+++++.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 95
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.95 E-value=7.2e-29 Score=185.97 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=127.5
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
.+..+||+++|..++|| +++++..+.|...+.||++.++.. + +...+.+.+|||+|++++..++..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 35689999999999999 567888899988899999866542 3 33457799999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINV 174 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i 174 (208)
++|||++++++|+.+..|+..+.+.. .+.|+++|+||+|+.+. ...++...... ..++++++|||++|.|+
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 99999999999999999998887642 47999999999999653 23333222111 23457999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKCL 186 (208)
Q Consensus 175 ~~~f~~i~~~~~ 186 (208)
+++|+.+++.+.
T Consensus 173 ~~l~~~l~~~~~ 184 (188)
T 1zd9_A 173 DITLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 96
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.95 E-value=1.8e-28 Score=180.30 Aligned_cols=157 Identities=14% Similarity=0.202 Sum_probs=125.3
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
.+..+||+++|..++|| +++++..+.|. .+.||++. ....+.++ .+.+.+|||+|++.+...+..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGF--NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSE--EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCcc--ceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 45679999999999999 46777677775 46788863 34555555 46799999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHH-H----HHHhCCeEEEEecCCCCCH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADL-L----SRALGCRLMRTSVKEDINV 174 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i 174 (208)
++|||++++.+|..+..|+..+.+.. .+.|+++|+||+|+.+.. ..++... + +...++++++|||++|.|+
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGL 156 (171)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCH
Confidence 99999999999999999988876653 379999999999996542 2222222 1 2233568999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKCLS 187 (208)
Q Consensus 175 ~~~f~~i~~~~~~ 187 (208)
+++|+.+.+.+.+
T Consensus 157 ~~l~~~l~~~i~~ 169 (171)
T 1upt_A 157 DEAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 97
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=1.8e-29 Score=202.84 Aligned_cols=155 Identities=13% Similarity=0.138 Sum_probs=120.9
Q ss_pred eEEEecCceEEE-E-EEeeecCcccc---ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc---hhHhhhcCCcE
Q psy2518 29 KAYYRGAQACVI-T-FSTIDRDSFEA---AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA---ITKAYYRGAQA 100 (208)
Q Consensus 29 ki~~vG~s~~gk-~-~~~~~~~~f~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---~~~~~~~~~d~ 100 (208)
||+++|++|+|| + +.++..+.+.. .+.||+|+++.. ++ ..++++||||+||++|+. .++.||+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 799999999999 3 33333333322 367999987753 22 458899999999999974 46899999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC-------CCCCHHHHHHHHHH----hCCeEEEEe
Q psy2518 101 CVITFSTIDR--DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ-------SVVAPEEADLLSRA----LGCRLMRTS 167 (208)
Q Consensus 101 ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~-------~~v~~~~~~~~~~~----~~~~~~e~S 167 (208)
+++|||++++ ++++.+..|+..+.+..++.|++++|||+|+.++ |++..++++++++. +++.|+|||
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 9999999998 3344444556666666668999999999999653 56778888888886 678999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q psy2518 168 VKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~~~~~~ 189 (208)
|++ .||.++|..+++.++...
T Consensus 156 Akd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp SSS-SHHHHHHHHHHTTSSTTH
T ss_pred cCC-CcHHHHHHHHHHHHHhhH
Confidence 998 599999999998876443
No 98
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.94 E-value=1.5e-27 Score=177.64 Aligned_cols=156 Identities=12% Similarity=0.177 Sum_probs=125.4
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
......+||+++|..++|| +++++..+.| ..+.+|+|... +.+.+++ +.+.+|||+|++++..++..+++++|
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence 3456689999999999999 5677878888 77889998553 4555655 77999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCC
Q psy2518 100 ACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDI 172 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~ 172 (208)
++++|||++++++|+.+..|+..+.+.. .+.|+++|+||+|+.+ ....++..+... ..++++++|||++|.
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 9999999999999999999998887653 4899999999999955 234444444332 234589999999999
Q ss_pred CHHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTTK 184 (208)
Q Consensus 173 ~i~~~f~~i~~~ 184 (208)
|++++|+.+++.
T Consensus 169 gi~~l~~~l~~~ 180 (181)
T 2h17_A 169 GLCQGLEWMMSR 180 (181)
T ss_dssp THHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998754
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.94 E-value=2.8e-28 Score=182.64 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=124.8
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
+..+||+++|+.++|| +++++..+.+.. +.||++. ....+.++ .+.+.+|||+|++++...+..+++++|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 4689999999999999 467777777764 6788873 34455555 467999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHH-----HHHhCCeEEEEecCCCCCHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLL-----SRALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~ 175 (208)
+|||++++++|+.+..|+..+.+.. .+.|+++|+||+|+.+.. ..++.... +...++++++|||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999999988887653 379999999999996532 22322221 12234579999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCLS 187 (208)
Q Consensus 176 ~~f~~i~~~~~~ 187 (208)
++|+.+.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (189)
T 2x77_A 173 EGMDWLVERLRE 184 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 100
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.94 E-value=9.1e-27 Score=173.81 Aligned_cols=156 Identities=13% Similarity=0.153 Sum_probs=126.2
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|+.++|| +++++..+. ...+.||++. ..+.+.++ .+.+++|||+|++++...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 4689999999999999 467776676 7778899873 34555555 467999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~ 175 (208)
+|||++++.+|+.+..|+..+.+.. .+.|+++|+||+|+.+. ...++..+... ..++++++|||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999999998887652 37999999999999654 23333333221 235689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCLS 187 (208)
Q Consensus 176 ~~f~~i~~~~~~ 187 (208)
++|+.+.+.+.+
T Consensus 169 ~l~~~l~~~i~~ 180 (186)
T 1ksh_A 169 PGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.2e-28 Score=193.57 Aligned_cols=163 Identities=15% Similarity=0.182 Sum_probs=130.3
Q ss_pred ccccceeeeEEEecCc---------eEEE--EEEeeec---Ccccccccccc-ccceeeEEEE--------------ECC
Q psy2518 21 QEEFDAITKAYYRGAQ---------ACVI--TFSTIDR---DSFEAAHSWKM-KVSIKRTIKE--------------CEG 71 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s---------~~gk--~~~~~~~---~~f~~~~~~t~-~~~~~~~~~~--------------~~~ 71 (208)
.......+||+++|++ ++|| +++++.. +.|...+.||+ +.++..+.+. +++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 4456788999999999 9999 5688888 67777888876 6776655443 567
Q ss_pred eEEEEEEEe-----------------------CCChhhhcchhHhhhc---------------------CCcEEEEEEeC
Q psy2518 72 EEVRLMLWD-----------------------TAGQEEFDAITKAYYR---------------------GAQACVITFST 107 (208)
Q Consensus 72 ~~~~l~i~D-----------------------t~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~ 107 (208)
..+.++||| ++|+++|..++..+++ +||++++|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 889999999 7788888888888887 79999999999
Q ss_pred CCh--hhHHHHHHHHHHHHhh--cCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 108 IDR--DSFEAAHSWKMKVENE--CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 108 ~~~--~s~~~~~~~~~~~~~~--~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
+++ .||+.+..|+..+.+. ..+.|+++|+||+|+.+++.+ +++++++.. .++++++|||++|.|++++|+.++
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 998 9999999999988765 247999999999999665544 567778876 478999999999999999999998
Q ss_pred HHH
Q psy2518 183 TKC 185 (208)
Q Consensus 183 ~~~ 185 (208)
+.+
T Consensus 251 ~~l 253 (255)
T 3c5h_A 251 QLI 253 (255)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 102
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=6.7e-27 Score=173.87 Aligned_cols=157 Identities=13% Similarity=0.168 Sum_probs=124.7
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
+..+||+++|..++|| +++++..+.+ ..+.||+|.. ...+.+++ +.+.+|||+|++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4689999999999999 4677777777 6788898743 45555654 77999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCCHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-----LGCRLMRTSVKEDINVN 175 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~Sa~~~~~i~ 175 (208)
+|||++++.+|+.+..|+..+.+.. .+.|+++|+||+|+.+. ...++..+.... .++++++|||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999998887763 38999999999999553 344444433321 23479999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCLSE 188 (208)
Q Consensus 176 ~~f~~i~~~~~~~ 188 (208)
++|+.+.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.92 E-value=6.6e-26 Score=166.44 Aligned_cols=151 Identities=14% Similarity=0.170 Sum_probs=116.5
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc------chhHhhhc--
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD------AITKAYYR-- 96 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~~~~-- 96 (208)
.+|++++|++|+|| +++++.+..+...+.|+.+.+.....+.+++ ..+++|||+|++.+. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999 4677777776666667776677777777766 468999999998775 34466665
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
++|++++|+|.++.++ ...|+..+.+. +.|+++|+||+|+.+.+.+.. +++++++.++++++++||++|.|+++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM--GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEE 154 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc--CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence 8999999999998654 44577666553 689999999999865555543 46778888999999999999999999
Q ss_pred HHHHHHHHH
Q psy2518 177 IFRYLTTKC 185 (208)
Q Consensus 177 ~f~~i~~~~ 185 (208)
+|+.+.+.+
T Consensus 155 l~~~l~~~~ 163 (165)
T 2wji_A 155 LKKAISIAV 163 (165)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.92 E-value=1.1e-26 Score=177.32 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=112.7
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCe-EEEEEEEeCCChhhhcc-hhHhhhcCCcE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGE-EVRLMLWDTAGQEEFDA-ITKAYYRGAQA 100 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~g~~~~~~-~~~~~~~~~d~ 100 (208)
...+||+++|++++|| ++.++..+.|.+.+.++. .++.. +.+++. .+.+++|||+|++++.. ++..+++++|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 5679999999999999 467888888988887654 34433 566654 68899999999999988 78899999999
Q ss_pred EEEEEeCCChh-hHHHHHHHHHHH-Hhh---cCCCCEEEEEeCCCCCCCCCCCHHHHHH---------------------
Q psy2518 101 CVITFSTIDRD-SFEAAHSWKMKV-ENE---CGEIPTVLVQNKIDLLDQSVVAPEEADL--------------------- 154 (208)
Q Consensus 101 ii~v~d~~~~~-s~~~~~~~~~~~-~~~---~~~~piivvgnK~Dl~~~~~v~~~~~~~--------------------- 154 (208)
+++|||+++.. ++.....|+..+ ... ..+.|+++|+||+|+.+.+.. .+....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA-KLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH-HHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH-HHHHHHHHHHHHHHhccchhccccccC
Confidence 99999999854 466665544443 331 226899999999999654321 111111
Q ss_pred --------------HHHHh---CCeEEEEecCCC------CCHHHHHHHHHHH
Q psy2518 155 --------------LSRAL---GCRLMRTSVKED------INVNSIFRYLTTK 184 (208)
Q Consensus 155 --------------~~~~~---~~~~~e~Sa~~~------~~i~~~f~~i~~~ 184 (208)
++... +++|+||||++| .||+++|+.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11111 568999999999 9999999998875
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.92 E-value=9.2e-26 Score=181.69 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=127.7
Q ss_pred eeeeEEEecCceEEE--EEEeeecC--ccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhh-----cchhHhhh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRD--SFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF-----DAITKAYY 95 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~--~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-----~~~~~~~~ 95 (208)
..+||+++|+.++|| +++++..+ .+. ..+.+|++.++.. +.+++ .+.+++|||+|++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 468999999999999 45665555 444 3577888766553 44444 688999999999998 77889999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHH---HHHhhcCCCCEEEEEeCCCCCC--CCC----CCHHHHHHHHHHhC---CeE
Q psy2518 96 RGAQACVITFSTIDRDSFEAAHSWKM---KVENECGEIPTVLVQNKIDLLD--QSV----VAPEEADLLSRALG---CRL 163 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~~~~piivvgnK~Dl~~--~~~----v~~~~~~~~~~~~~---~~~ 163 (208)
+++|++++|||++++++|+++..|.. .+....++.|+++|+||+|+.+ ++. +..+++.++++.+| +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999876644 4444455899999999999966 454 66788889999987 699
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q psy2518 164 MRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 164 ~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
++|||++ .++.++|..+++.++
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 899999999887654
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.4e-26 Score=186.79 Aligned_cols=156 Identities=13% Similarity=0.195 Sum_probs=118.2
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
...+||+++|..++|| +++++..+.|...+ ||++..+. .+.. ..+.+.||||+|++.+..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3567999999999999 46777788887654 78875433 3333 4477999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~ 175 (208)
+|||++++.+|..+..|+..+..... +.|+++|+||+|+.+.. ..++...... ..++++++|||++|.||+
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 99999999999999888877765543 79999999999996533 2232222211 123479999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCLS 187 (208)
Q Consensus 176 ~~f~~i~~~~~~ 187 (208)
++|+.+++.+.+
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988743
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.92 E-value=1.9e-24 Score=166.70 Aligned_cols=163 Identities=9% Similarity=0.014 Sum_probs=118.5
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh------hh----hcchhH
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ------EE----FDAITK 92 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~------~~----~~~~~~ 92 (208)
...+||+++|.+++|| +++++..+.|.....+....+.....+..++ +.+.+|||+|+ ++ +.. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 3578999999999999 4677777777643333322233333334443 56899999998 43 222 33
Q ss_pred hhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHH---HHHHHHHHhC--CeEEE
Q psy2518 93 AYYRGAQACVITFSTIDRDSFE--AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPE---EADLLSRALG--CRLMR 165 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~---~~~~~~~~~~--~~~~e 165 (208)
.++..+|++++|||++++.+|. ....|+..+....++.|+++|+||+|+.+.+.+..+ ....++...+ +++++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 4578899999999999998875 234677777665457999999999999877777765 4566777776 79999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518 166 TSVKEDINVNSIFRYLTTKCLSELR 190 (208)
Q Consensus 166 ~Sa~~~~~i~~~f~~i~~~~~~~~~ 190 (208)
|||++|.||+++|+.+++.+.+...
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876654
No 108
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=1e-24 Score=161.26 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=122.1
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d 99 (208)
.-....+||+++|..++|| +++++..+.|...+.++++.++....+.+++.. +.+|||+|++.+..++..+++.+|
T Consensus 3 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d 80 (178)
T 2lkc_A 3 HMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTD 80 (178)
T ss_dssp TTCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCC
T ss_pred CcCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCC
Confidence 3446789999999999999 567888889988888888888888888888765 679999999999999999999999
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-------C--CeEEEEe
Q psy2518 100 ACVITFSTIDR---DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-------G--CRLMRTS 167 (208)
Q Consensus 100 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-------~--~~~~e~S 167 (208)
++++|||++++ .+++.+ ..+.. .+.|+++|+||+|+.+. ..++........ + +++++||
T Consensus 81 ~~i~v~d~~~~~~~~~~~~l----~~~~~--~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 81 IVILVVAADDGVMPQTVEAI----NHAKA--ANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp EEEEEEETTCCCCHHHHHHH----HHHGG--GSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred EEEEEEECCCCCcHHHHHHH----HHHHh--CCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 99999999984 444332 22222 27899999999999552 233333333222 2 4899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q psy2518 168 VKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~~~~~ 188 (208)
|++|.|++++|+.+++.+...
T Consensus 152 a~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 152 AKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp SSSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999887653
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.91 E-value=5.5e-25 Score=164.29 Aligned_cols=155 Identities=13% Similarity=0.151 Sum_probs=122.8
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC-----------hhhhcchhHh
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG-----------QEEFDAITKA 93 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g-----------~~~~~~~~~~ 93 (208)
++||+++|+.++|| +++++..+.|...+.|+++.+ ...+.++ .+.+|||+| ++.+...+..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 47999999999999 467888888888777766533 3444444 689999999 7888888888
Q ss_pred hhcC-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHhh--cCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC
Q psy2518 94 YYRG-AQACVITFSTIDRDSFEAA-HSWKMK--------VENE--CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC 161 (208)
Q Consensus 94 ~~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~--------~~~~--~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~ 161 (208)
+++. ++++++||++.+..++.++ ..|... +... ..+.|+++|+||+|+.+.+ .++++++++.+++
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEV 151 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTC
T ss_pred HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhh
Confidence 8887 8988899999989999887 677652 2221 1379999999999996644 6778889998887
Q ss_pred e-------EEEEecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518 162 R-------LMRTSVKEDINVNSIFRYLTTKCLSELR 190 (208)
Q Consensus 162 ~-------~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 190 (208)
+ +++|||++|.|++++|+.+++.+.+..+
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 4 7999999999999999999998865443
No 110
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.90 E-value=2.8e-25 Score=191.27 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=126.4
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEE------EEE--CCeEEEEEEEeCCChhhhcchhH
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTI------KEC--EGEEVRLMLWDTAGQEEFDAITK 92 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~------~~~--~~~~~~l~i~Dt~g~~~~~~~~~ 92 (208)
.....+||+++|..++|| +++++..+.|...+.||+|.++..+. +.+ ++..+.+.+|||+|++.+..+..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 467789999999999999 57888899999999999998877552 222 34568899999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~ 172 (208)
.+++.+|++++|||+++. +.+..|+..+....++.|+++|+||+|+.+.+.+..+++++++...+++++++||++|.
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 999999999999999865 45677999998887789999999999998888888999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTTKCLS 187 (208)
Q Consensus 173 ~i~~~f~~i~~~~~~ 187 (208)
||+++|+.+.+.+..
T Consensus 194 gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 194 GVESIAKSLKSAVLH 208 (535)
T ss_dssp -CTTHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988754
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=2.6e-24 Score=160.55 Aligned_cols=156 Identities=14% Similarity=0.166 Sum_probs=124.7
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc------chhHhhhc
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD------AITKAYYR 96 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~~~~ 96 (208)
...+||+++|++|+|| +++++.+..+...+.|+++.+.....+.+++ +.+.+|||+|++.+. .++..+++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 4678999999999999 4677777777666777777777777777765 568999999998774 34566664
Q ss_pred --CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2518 97 --GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINV 174 (208)
Q Consensus 97 --~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i 174 (208)
.+|++++|+|.++ ++....|+..+... +.|+++|+||+|+...+.+. +++.++++.++++++++||++|.|+
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLMEM--GANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHTT--TCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHhc--CCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 5999999999875 55666787777653 68999999999986655554 4567788889999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKCLSE 188 (208)
Q Consensus 175 ~~~f~~i~~~~~~~ 188 (208)
+++|+.+++.+...
T Consensus 157 ~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 157 EELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887543
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=5.5e-25 Score=187.86 Aligned_cols=158 Identities=16% Similarity=0.241 Sum_probs=123.2
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i 101 (208)
....+||+++|..++|| +++++..+.+.. +.||++..+. .+.+ ..+.+.+|||+|++.+..++..+++.+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 45679999999999999 567777777654 5678874433 3333 446799999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCH
Q psy2518 102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINV 174 (208)
Q Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i 174 (208)
|+|||++++++|+.+..|+..+.+... +.|+++|+||+|+.+. ...++...... ..++++++|||++|.||
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCH
Confidence 999999999999999999988866543 7999999999999653 23333322211 12346999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKCLSE 188 (208)
Q Consensus 175 ~~~f~~i~~~~~~~ 188 (208)
+++|+.|.+.+.+.
T Consensus 472 ~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 472 YEGLTWLTSNYKSK 485 (497)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999876443
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.89 E-value=9.3e-24 Score=158.45 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=108.6
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC----------hhhhcchh
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG----------QEEFDAIT 91 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g----------~~~~~~~~ 91 (208)
....+||+++|..++|| +++++..+.|...+.++.+..........++ .+.+|||+| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34689999999999999 4677778888887888887666555555554 589999999 88888888
Q ss_pred HhhhcCC---cEEEEEEeCCChhhHHHHH--HHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH--HHHHH-HHHHhCCeE
Q psy2518 92 KAYYRGA---QACVITFSTIDRDSFEAAH--SWKMKVENECGEIPTVLVQNKIDLLDQSVVAP--EEADL-LSRALGCRL 163 (208)
Q Consensus 92 ~~~~~~~---d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~--~~~~~-~~~~~~~~~ 163 (208)
..+++.+ |++++|+|++++.++.... .|+.. .+.|+++|+||+|+.+.+.+.. +++.+ ++...++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 8888877 9999999999988877642 33322 3689999999999976544332 22222 222235699
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q psy2518 164 MRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 164 ~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
+++||++|.|++++|+.+.+.+
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.88 E-value=1.9e-23 Score=151.87 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=105.0
Q ss_pred eeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhh-------hcchhHhhhc
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE-------FDAITKAYYR 96 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-------~~~~~~~~~~ 96 (208)
+.||+++|+.++|| +++++..+.+. ....++...+.....+..++. .+.+|||+|++. +...+..+++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 46899999999999 45666666543 223344444666677777775 578999999876 3455667889
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHH
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVN 175 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~ 175 (208)
.+|++++|||.+++.+... .|+....+. .+.|+++|+||+|+.+. .+++.+++ ..++ +++++||++|.|++
T Consensus 79 ~~~~~i~v~d~~~~~~~~~--~~~~~~~~~-~~~p~ilv~nK~Dl~~~----~~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQAD--YEVAEYLRR-KGKPVILVATKVDDPKH----ELYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp TCSEEEEEEESSSCCCHHH--HHHHHHHHH-HTCCEEEEEECCCSGGG----GGGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred hCCEEEEEEECCCcccHhH--HHHHHHHHh-cCCCEEEEEECcccccc----hHhHHHHH-hCCCCCeEEEecccCCChH
Confidence 9999999999998655432 222222222 26899999999999653 23444555 6777 89999999999999
Q ss_pred HHHHHHHHHH
Q psy2518 176 SIFRYLTTKC 185 (208)
Q Consensus 176 ~~f~~i~~~~ 185 (208)
++|+.+++.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.88 E-value=8.3e-24 Score=156.38 Aligned_cols=151 Identities=16% Similarity=0.132 Sum_probs=110.8
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch--------hHhh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI--------TKAY 94 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~--------~~~~ 94 (208)
..+||+++|.+++|| +++++....+. ....++.+.++....+.+++.. +.+|||+|++.+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence 357999999999999 45666665542 1223344457777888888755 789999998643211 1246
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN 173 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 173 (208)
++.+|++++|||.+++.+++. ..|+..+.+... +.|+++|+||+|+.++.. .++...+.++++|||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 899999999999999988764 467777766654 799999999999854211 12223466899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKCL 186 (208)
Q Consensus 174 i~~~f~~i~~~~~ 186 (208)
++++|+.+.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 116
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.87 E-value=1.7e-22 Score=162.09 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=110.8
Q ss_pred EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh-hHHHHHH
Q psy2518 41 TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD-SFEAAHS 118 (208)
Q Consensus 41 ~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~ 118 (208)
++.++..+.|. +.|.||+| +.+...+..++ +++|||| +++|+.+++.+++++|++++|||++++. +++.+..
T Consensus 33 l~~~~~~~~f~~~~~~pTiG-d~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 33 RILCKLRGKFRLQNLKIYVG-DRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp EEEEEECGGGTTTTCCCCTT-CEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred EEEEEEcccccccCCCCCCc-cEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 44677799999 89999999 44444433333 6899999 9999999999999999999999999997 7898999
Q ss_pred HHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHH
Q psy2518 119 WKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG--CRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 119 ~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
|+..+.. .+.|+++|+||+||.+++.+ +++++++..++ +++++|||++|.|++++|..+..
T Consensus 107 ~l~~~~~--~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 107 FLVLAEK--NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHH--TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHH--CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 9987765 37999999999999654432 45777888887 89999999999999999987754
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.87 E-value=1.9e-22 Score=158.56 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=119.5
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc------hhHhhh-
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA------ITKAYY- 95 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------~~~~~~- 95 (208)
.+.+||+++|..++|| +++++.+..+.....|++.++.....+..++ +.+.+|||||+..+.. +.+.++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4578999999999999 4677777777655556555555555554444 6799999999987765 235565
Q ss_pred -cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2518 96 -RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINV 174 (208)
Q Consensus 96 -~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i 174 (208)
..+|++++|+|.++.++.. .|..++... +.|+++|+||+|+.+.+.+.. ++.++++.++++++++||++|.|+
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM--EKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGL 154 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT--TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTH
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc--CCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCH
Confidence 5899999999999876543 466665543 799999999999966555553 467889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKCL 186 (208)
Q Consensus 175 ~~~f~~i~~~~~ 186 (208)
+++|+.+.+.+.
T Consensus 155 ~el~~~i~~~~~ 166 (258)
T 3a1s_A 155 EELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988653
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.86 E-value=4.6e-22 Score=148.85 Aligned_cols=161 Identities=13% Similarity=0.121 Sum_probs=116.8
Q ss_pred eccCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC----------h
Q psy2518 17 DTAGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG----------Q 84 (208)
Q Consensus 17 d~~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g----------~ 84 (208)
...++......+||+++|+.++|| +++++..+. ...+.++.+..........+. .+.+|||+| +
T Consensus 13 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~ 88 (195)
T 3pqc_A 13 RTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKER 88 (195)
T ss_dssp CSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHH
T ss_pred cChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhH
Confidence 333444556788999999999999 456666666 344566666554444444443 477999999 7
Q ss_pred hhhcchhHhhhcCC---cEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--CCCCHHHHHHHHH
Q psy2518 85 EEFDAITKAYYRGA---QACVITFSTIDRDSF--EAAHSWKMKVENECGEIPTVLVQNKIDLLDQ--SVVAPEEADLLSR 157 (208)
Q Consensus 85 ~~~~~~~~~~~~~~---d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~--~~v~~~~~~~~~~ 157 (208)
+.+..++..+++.+ |++++|+|.++..+. ..+..|+... +.|+++|+||+|+.+. +....+++.+++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 163 (195)
T 3pqc_A 89 MLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFS 163 (195)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHh
Confidence 88888888888776 999999999876443 3334454432 6899999999998543 2333455566666
Q ss_pred HhC-CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 158 ALG-CRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 158 ~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
..+ +++++|||++|.|++++|+.+.+.+.
T Consensus 164 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 164 KYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 544 59999999999999999999988764
No 119
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=1.6e-22 Score=165.20 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=108.7
Q ss_pred cCccccccccccccceee---------EEEEECC----eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCC-----
Q psy2518 47 RDSFEAAHSWKMKVSIKR---------TIKECEG----EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTI----- 108 (208)
Q Consensus 47 ~~~f~~~~~~t~~~~~~~---------~~~~~~~----~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~----- 108 (208)
...|.+.|.||++..+.. ..+.+++ ..+.++||||+|++++++++..++++++++|+|||++
T Consensus 143 ~ri~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~ 222 (354)
T 2xtz_A 143 KRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQT 222 (354)
T ss_dssp HHHHSTTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCB
T ss_pred HHHhcCCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccc
Confidence 344567788887643322 2233455 6899999999999999999999999999999999998
Q ss_pred -----ChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCC--C-------------------CHHHHHHHHHH--
Q psy2518 109 -----DRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSV--V-------------------APEEADLLSRA-- 158 (208)
Q Consensus 109 -----~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~--v-------------------~~~~~~~~~~~-- 158 (208)
+..+|++...|+..+.+.. ++.|++|+|||+|+.+++. + +.+++.+++.+
T Consensus 223 l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f 302 (354)
T 2xtz_A 223 LFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKF 302 (354)
T ss_dssp CSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHH
Confidence 7889999999999887653 4899999999999854322 2 14667777543
Q ss_pred --------------hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518 159 --------------LGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 159 --------------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
..+.+++|||+++.||+++|..+.+.++..
T Consensus 303 ~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~ 346 (354)
T 2xtz_A 303 EELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRR 346 (354)
T ss_dssp HHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHH
Confidence 123568999999999999999999988754
No 120
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.85 E-value=6.2e-22 Score=161.71 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=106.3
Q ss_pred cccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHh
Q psy2518 56 WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID----------RDSFEAAHSWKMKVEN 125 (208)
Q Consensus 56 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~ 125 (208)
||+|+. ...+.++ .+.+++|||+|++.+++.|..++++++++|+|||+++ ..++.+...|+..+.+
T Consensus 179 ~T~Gi~--~~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 179 KTTGIV--ETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp CCCSEE--EEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred ceeceE--EEEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 455533 2334444 5789999999999999999999999999999999999 5679999999998877
Q ss_pred hc--CCCCEEEEEeCCCCCCCC---------------CCCHHHHHHHHHH-----------hCCeEEEEecCCCCCHHHH
Q psy2518 126 EC--GEIPTVLVQNKIDLLDQS---------------VVAPEEADLLSRA-----------LGCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 126 ~~--~~~piivvgnK~Dl~~~~---------------~v~~~~~~~~~~~-----------~~~~~~e~Sa~~~~~i~~~ 177 (208)
.. .+.|++|++||+|+.+++ .++.+++..++.. .++.+++|||+++.||.++
T Consensus 255 ~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~v 334 (353)
T 1cip_A 255 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV 334 (353)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHH
T ss_pred CccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHH
Confidence 53 379999999999985322 4678889888873 4568999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 178 FRYLTTKCLSE 188 (208)
Q Consensus 178 f~~i~~~~~~~ 188 (208)
|..+.+.++..
T Consensus 335 F~~v~~~i~~~ 345 (353)
T 1cip_A 335 FDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=2.6e-22 Score=158.83 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=113.7
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc------chhHhhhc-
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD------AITKAYYR- 96 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~~~~- 96 (208)
..+||+++|..++|| +++++.+..+.....|.+ .+..+...++. .+.+.+|||||++.+. .+.+.++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~--tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV--TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC--CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC--cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 368999999999999 467776655333333433 33344445555 6679999999998775 45566776
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518 97 -GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 97 -~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 175 (208)
.+|++++|+|.++.+++ ..|..++.. .+.|+++|+||+|+.+.+.+. .++..+++.++++++++||++|.|++
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 69999999999987654 346555554 278999999999986555554 45677888999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2518 176 SIFRYLTTKC 185 (208)
Q Consensus 176 ~~f~~i~~~~ 185 (208)
++|+.+++.+
T Consensus 153 el~~~i~~~~ 162 (272)
T 3b1v_A 153 QVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 122
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=5.2e-23 Score=157.25 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=108.1
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCcccc---ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC-
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEA---AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG- 97 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~- 97 (208)
....+||+++|..++|| +++++..+.|.. .+.||++.++ ..+.+.+|||+|++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 45689999999999999 467777777665 4667766544 44568999999999999888888887
Q ss_pred ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhc-----CCCCEEEEEeCCCCCCCCCCC------HHHHHHHHHHhCCe
Q psy2518 98 ---AQACVITFSTI-DRDSFEAAHSWKMKVENEC-----GEIPTVLVQNKIDLLDQSVVA------PEEADLLSRALGCR 162 (208)
Q Consensus 98 ---~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~piivvgnK~Dl~~~~~v~------~~~~~~~~~~~~~~ 162 (208)
+|++++|||.+ ++++|..+..|+..+.... .+.|+++|+||+|+.+.+.+. .+++..++...+++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999 8899999989988876542 379999999999997765544 55677788888889
Q ss_pred EEEEecCCCCC
Q psy2518 163 LMRTSVKEDIN 173 (208)
Q Consensus 163 ~~e~Sa~~~~~ 173 (208)
++++||++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999999875
No 123
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.85 E-value=3.7e-22 Score=156.65 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=117.6
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc----------hhHhhh
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA----------ITKAYY 95 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----------~~~~~~ 95 (208)
.+|+++|..++|| +++++.+..+.....|+++++.....+.+++. .+.+|||||...+.. +.+.++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 5899999999999 46777777776666777777888888888776 689999999877654 456677
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518 96 --RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN 173 (208)
Q Consensus 96 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 173 (208)
..+|++++|+|.++.+++..+..|+ ... +.|+++|+||+|+.+.+.+.. ....+++.++++++++||++|.|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l---~~~--~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQL---FEL--GKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIG 153 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHH---TTS--CSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBS
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHH---HHc--CCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCC
Confidence 8999999999999977665544333 222 689999999999865444332 24557888899999999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTK 184 (208)
Q Consensus 174 i~~~f~~i~~~ 184 (208)
++++|+.+.+.
T Consensus 154 i~el~~~i~~~ 164 (256)
T 3iby_A 154 IPALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 124
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.84 E-value=1.1e-21 Score=158.37 Aligned_cols=141 Identities=12% Similarity=0.072 Sum_probs=112.4
Q ss_pred eeecCccccc-------cccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCC--------
Q psy2518 44 TIDRDSFEAA-------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTI-------- 108 (208)
Q Consensus 44 ~~~~~~f~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~-------- 108 (208)
|+....|.++ +.||+|+. ...+.++ .+.+++|||+|++++++.|..|+++++++|+|||++
T Consensus 134 Ri~~~~Y~PT~~Dilr~r~~TiGi~--~~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d 209 (327)
T 3ohm_A 134 RVADPSYLPTQQDVLRVRVPTTGII--EYPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209 (327)
T ss_dssp HHHSTTCCCCHHHHTTCCCCCCSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSS
T ss_pred HHhccCCCccccchhcccCceeeEE--EEEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccc
Confidence 4445566655 56778743 3334444 478999999999999999999999999999999665
Q ss_pred --ChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCC----------------CCCHHHHHHHHH----------H
Q psy2518 109 --DRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQS----------------VVAPEEADLLSR----------A 158 (208)
Q Consensus 109 --~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~----------------~v~~~~~~~~~~----------~ 158 (208)
+..++.+...|+..+.+.. .+.|++++|||+|+.+++ .++.+++.+++. .
T Consensus 210 ~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~ 289 (327)
T 3ohm_A 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSD 289 (327)
T ss_dssp CTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTT
T ss_pred cccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccccc
Confidence 6678888888888887653 379999999999985543 578888888843 3
Q ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518 159 LGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 159 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
.++.+++|||+++.||+++|..+.+.+++.
T Consensus 290 ~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 290 KIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp SCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999998764
No 125
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.84 E-value=6.7e-21 Score=157.46 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=99.9
Q ss_pred EEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc--CCCCE
Q psy2518 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID----------RDSFEAAHSWKMKVENEC--GEIPT 132 (208)
Q Consensus 65 ~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~pi 132 (208)
+.+.+++ +.++||||+|++++++.|..++++++++|+|||+++ ..+|+++..|+..+.+.. .+.|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 3445554 789999999999999999999999999999999999 899999999999988753 38999
Q ss_pred EEEEeCCCCCCCCC---C---------------------------CHHHHHHHHH-----H--------hCCeEEEEecC
Q psy2518 133 VLVQNKIDLLDQSV---V---------------------------APEEADLLSR-----A--------LGCRLMRTSVK 169 (208)
Q Consensus 133 ivvgnK~Dl~~~~~---v---------------------------~~~~~~~~~~-----~--------~~~~~~e~Sa~ 169 (208)
+|+|||+||.+++. + ..+++..++. . .++.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999854332 2 1355666542 2 24567899999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy2518 170 EDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 170 ~~~~i~~~f~~i~~~~~~~~ 189 (208)
++.||+++|..+.+.++...
T Consensus 368 d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHH
Confidence 99999999999988877553
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.84 E-value=2.4e-21 Score=148.32 Aligned_cols=166 Identities=8% Similarity=-0.036 Sum_probs=111.1
Q ss_pred ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCC----------hhhh
Q psy2518 21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAG----------QEEF 87 (208)
Q Consensus 21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g----------~~~~ 87 (208)
+-.....+||+++|.+++|| +++++..+.+.....++.|.........+. .....+.||||+| ++.+
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 33345678999999999999 467776666433334444433334444444 4456789999999 5666
Q ss_pred cchhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC--HHHHHHHHHH----
Q psy2518 88 DAITKAYYRG---AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA--PEEADLLSRA---- 158 (208)
Q Consensus 88 ~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~--~~~~~~~~~~---- 158 (208)
..+...+++. +|++++|+|.+++.+.. ...|+..+.. .+.|+++|+||+|+.+.+... .+...+....
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 7777777766 78899999999864432 2344444444 268999999999985532221 1112222222
Q ss_pred ---hCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 159 ---LGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 159 ---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
.+.+++++||++|.|++++|+.+.+.+....
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 3458999999999999999999998876543
No 127
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.83 E-value=3.2e-21 Score=152.50 Aligned_cols=154 Identities=17% Similarity=0.162 Sum_probs=121.4
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc------hhHhhh--
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA------ITKAYY-- 95 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------~~~~~~-- 95 (208)
..+||+++|..|+|| +++++.+..+.....|+++++.....+.+++.. +.+|||||+..+.. ..+.++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999 467777887766777888878877777777765 89999999987766 566666
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518 96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 175 (208)
..+|++++|+|.++.+. ...|..++.... ..|+++|+||+|+.+.+.+..+ ...+++.++++++++||++|.|++
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEME-VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHTT-CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhcC-CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence 68999999999998642 333444444431 3899999999998554434333 677888899999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCL 186 (208)
Q Consensus 176 ~~f~~i~~~~~ 186 (208)
++|+.+.+.+.
T Consensus 155 ~l~~~i~~~~~ 165 (271)
T 3k53_A 155 ELKRMIALMAE 165 (271)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 128
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=1.2e-20 Score=151.83 Aligned_cols=162 Identities=12% Similarity=0.079 Sum_probs=122.2
Q ss_pred cccceeeeEEEecCceEEE--EEEeeecCcccccc-ccccccceeeEEEEECCeEEEEEEEeCCChhhh----------c
Q psy2518 22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAH-SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF----------D 88 (208)
Q Consensus 22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----------~ 88 (208)
......-.|.++|..++|| +++++.+..+.... .+....+.....+..+ ...++.+|||||+..+ .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 4456678899999999999 46777777765321 1111112222223332 2567899999998443 3
Q ss_pred chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEE
Q psy2518 89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG--CRLMRT 166 (208)
Q Consensus 89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~ 166 (208)
.....+++.+|++++|+|++++.++.....|+..+... +.|+++|+||+|+.+.+....+....++..++ .+++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~v 161 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI 161 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 56677899999999999999999998888888877763 68999999999997445666777788888875 689999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy2518 167 SVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~~ 186 (208)
||++|.|++++|+.+.+.+.
T Consensus 162 SA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 162 SALKGANLDELVKTILKYLP 181 (308)
T ss_dssp BTTTTBSHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHhCc
Confidence 99999999999999988764
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=3.9e-21 Score=161.59 Aligned_cols=159 Identities=10% Similarity=0.057 Sum_probs=116.8
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcchh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDAIT 91 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~~ 91 (208)
...+||+++|.+++|| +++++.++.+. ....++.+.+.....+.+++.. +.||||+|+ +.|..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence 3569999999999999 46777777664 2333444457777778888765 899999998 6666554
Q ss_pred H-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH-HHH----hCCeEEE
Q psy2518 92 K-AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL-SRA----LGCRLMR 165 (208)
Q Consensus 92 ~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~-~~~----~~~~~~e 165 (208)
. .+++.+|++++|+|++++.++++. .|+..+.. .+.|+++|+||+|+.+++.+..++..+. ... .++++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 4 478899999999999999888876 57666654 3789999999999977666554444332 232 3579999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q psy2518 166 TSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 166 ~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
+||++|.|++++|+.+.+.+...
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998887643
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=6.2e-21 Score=161.23 Aligned_cols=159 Identities=10% Similarity=0.070 Sum_probs=119.8
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCc-cccccccccccceeeEEEEECCeEEEEEEEeCCC----------hhhhcchh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDS-FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG----------QEEFDAIT 91 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g----------~~~~~~~~ 91 (208)
...+|++++|..++|| +++++.... +.....++.+.+.....+..++. .+.||||+| +++|..+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4578999999999999 456666543 33334455556777777888776 589999999 78887766
Q ss_pred Hh-hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-----CCeEEE
Q psy2518 92 KA-YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-----GCRLMR 165 (208)
Q Consensus 92 ~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~e 165 (208)
.. +++.+|++++|+|.++..+.. ...|...+.. .+.|+++|+||+|+.+.+.+..+++.+.+++. ++++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 64 789999999999999864433 2345554444 36899999999999877777778877777765 579999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q psy2518 166 TSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 166 ~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
+||++|.|++++|+.+.+.+...
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999877554
No 131
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.82 E-value=1.7e-21 Score=154.41 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=116.9
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc----------hhHh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA----------ITKA 93 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----------~~~~ 93 (208)
..++|+++|..++|| +++++.+..+.....|++.++.....+..++.. +.+|||||+..+.. ..+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE--EEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc--eEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999 577777777766677777777777777776654 68899999877662 2333
Q ss_pred hh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518 94 YY--RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED 171 (208)
Q Consensus 94 ~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 171 (208)
++ +.+|++++|+|.++.++...+..| +... +.|+++|+||+|+.+.+.+. .....+++.++++++++||++|
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~--~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL--GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH--TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc--CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 33 799999999999987665444333 3333 68999999999985543332 2346688889999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTKCL 186 (208)
Q Consensus 172 ~~i~~~f~~i~~~~~ 186 (208)
.|++++|+.+.+.+.
T Consensus 154 ~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 154 RGIEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999877653
No 132
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.82 E-value=1.6e-20 Score=153.90 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=98.3
Q ss_pred cccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHh
Q psy2518 56 WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID----------RDSFEAAHSWKMKVEN 125 (208)
Q Consensus 56 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~ 125 (208)
+|+|++. ..+.++ .+.+++|||+|++.++..|..++++++++|+|||+++ ..++.+...|+..+.+
T Consensus 187 ~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 187 PTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 4455432 344444 4789999999999999999999999999999999999 7799999999998876
Q ss_pred hc--CCCCEEEEEeCCCCCCCC----------------CCCHHHHHHHHH-----------HhCCeEEEEecCCCCCHHH
Q psy2518 126 EC--GEIPTVLVQNKIDLLDQS----------------VVAPEEADLLSR-----------ALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 126 ~~--~~~piivvgnK~Dl~~~~----------------~v~~~~~~~~~~-----------~~~~~~~e~Sa~~~~~i~~ 176 (208)
.. .+.|+++++||+|+.+++ .++.+++..++. ..++.+++|||+++.||++
T Consensus 263 ~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 53 379999999999985322 377888888762 3456889999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 177 IFRYLTTKCLSE 188 (208)
Q Consensus 177 ~f~~i~~~~~~~ 188 (208)
+|..+.+.++..
T Consensus 343 vF~~v~~~i~~~ 354 (362)
T 1zcb_A 343 VFRDVKDTILHD 354 (362)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 133
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.81 E-value=1.5e-20 Score=152.19 Aligned_cols=141 Identities=9% Similarity=0.111 Sum_probs=110.0
Q ss_pred EeeecCccccc-------cccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCC-------
Q psy2518 43 STIDRDSFEAA-------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTI------- 108 (208)
Q Consensus 43 ~~~~~~~f~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~------- 108 (208)
.|+....|.++ +.+|+|+.. ..+.+ +.+.+++|||+|++++++.|..++++++++|+|||++
T Consensus 127 ~Ri~~~~Y~PT~~Dil~~~~~TiGi~~--~~~~~--~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~ 202 (340)
T 4fid_A 127 KRIAMEDYVPTEEDLIHNRTKTTGIHE--YDFVV--KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLY 202 (340)
T ss_dssp HHHSSTTCCCCHHHHHHSCCCCCSCEE--EEEES--SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC
T ss_pred HHHhcccCCccccceeecccceeeeEE--EEEEe--eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccc
Confidence 34445566665 667787543 23333 4578999999999999999999999999999999998
Q ss_pred ---ChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCC---------------CCCHHHHHHHHHH-h--------
Q psy2518 109 ---DRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQS---------------VVAPEEADLLSRA-L-------- 159 (208)
Q Consensus 109 ---~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~---------------~v~~~~~~~~~~~-~-------- 159 (208)
+..++.+...|+..+.+.. .+.|++|+|||+|+.+++ ....+++.+++.. +
T Consensus 203 e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~ 282 (340)
T 4fid_A 203 EDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEE 282 (340)
T ss_dssp --CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEE
T ss_pred cccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhh
Confidence 7888999988988887653 379999999999984321 1246666555433 2
Q ss_pred ------------------CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518 160 ------------------GCRLMRTSVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 160 ------------------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
++.++++||+++.||..+|..+.+.++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 283 MNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp SCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999887
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.80 E-value=1.2e-20 Score=157.31 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=113.8
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch-------hHh
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-------TKA 93 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-------~~~ 93 (208)
....++|+++|..++|| +++++....+. ....++...+...+.+.+.+.. .+.+|||+|++.+..+ ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence 35678999999999999 45777777663 2233444456667777776553 6899999999877654 345
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN 173 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 173 (208)
+++.+|++++|+|.+..+. ...|+..+.+. +.|+++|+||+|+.+.+.. +.++++++.++++++++||++|.|
T Consensus 110 ~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTPY---EDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKG 182 (423)
T ss_dssp HHTSCSEEEEECSSSCCHH---HHHHHHHHHHT--TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred HHhcCCEEEEEEeCCChHH---HHHHHHHHHhc--CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCC
Confidence 7899999999999943333 35566666655 7899999999999765544 666777777889999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKCLS 187 (208)
Q Consensus 174 i~~~f~~i~~~~~~ 187 (208)
++++|+.+.+.+..
T Consensus 183 I~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 183 FDDIGKTISEILPG 196 (423)
T ss_dssp TTTHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999988743
No 135
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.80 E-value=3.1e-20 Score=157.22 Aligned_cols=155 Identities=11% Similarity=-0.003 Sum_probs=97.7
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCcc-ccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchh--------
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSF-EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT-------- 91 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~-------- 91 (208)
..+..+||+++|..++|| +++++....+ .....++...+.....+.+++. .+.+|||+|+..+...+
T Consensus 229 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~ 306 (476)
T 3gee_A 229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRS 306 (476)
T ss_dssp HHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC-------------------
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHH
Confidence 345678999999999999 4566666542 2233344445777777888775 58999999997765433
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAA---HSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~---~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 168 (208)
..+++.+|++++|+|.+++.+++.+ ..|+..+ .+.|+++|+||+|+.+.+.. ..+.+......+++++||
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSA 379 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISA 379 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBT
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEE
Confidence 3468899999999999999888543 3344333 26899999999999664432 223344432468999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy2518 169 KEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 169 ~~~~~i~~~f~~i~~~~~ 186 (208)
++|.|++++|+.+.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998775
No 136
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.79 E-value=5e-19 Score=145.17 Aligned_cols=160 Identities=15% Similarity=0.089 Sum_probs=115.2
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc---------chhHh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD---------AITKA 93 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~~ 93 (208)
...++++++|.+|+|| +++++....+.....+....+.....+..+ ...+.+|||+|..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 3568999999999999 355555555432222222122333333333 3568999999975431 11223
Q ss_pred hhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518 94 YYRGAQACVITFSTIDRD--SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED 171 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 171 (208)
+...+|++++|+|++++. +++....|+..+....++.|+++|+||+|+.+... .+++.+++...+++++++||++|
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCC
Confidence 455799999999999887 78888889988887665799999999999965332 24466677778889999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTKCLSE 188 (208)
Q Consensus 172 ~~i~~~f~~i~~~~~~~ 188 (208)
.|++++|+.+.+.+...
T Consensus 321 ~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999987654
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.77 E-value=5.2e-19 Score=149.86 Aligned_cols=153 Identities=11% Similarity=0.050 Sum_probs=113.2
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChh-hhcc--------hhH
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE-EFDA--------ITK 92 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~-~~~~--------~~~ 92 (208)
+..+||+++|..++|| +++++....+. ....|+...+.....+.+++.+ +.+|||+|.. .+.. ...
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~ 318 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTL 318 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHH
Confidence 3458999999999999 45666666432 2223334457777888888765 7999999987 5432 234
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~ 172 (208)
.+++.+|++++|+|.+++.+++... ++..+ .+.|+++|+||+|+.+. +..++..+++. .+++++++||++|.
T Consensus 319 ~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~ 390 (482)
T 1xzp_A 319 QEIEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGE 390 (482)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTC
T ss_pred HHhhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCC
Confidence 6789999999999999988886643 33332 36899999999999642 45555554432 34689999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTTKCLS 187 (208)
Q Consensus 173 ~i~~~f~~i~~~~~~ 187 (208)
|++++|+.+.+.+..
T Consensus 391 Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 391 GLEKLEESIYRETQE 405 (482)
T ss_dssp CHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987653
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=8.3e-19 Score=147.55 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=103.5
Q ss_pred eeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhh---------hcchhHhhh
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE---------FDAITKAYY 95 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~---------~~~~~~~~~ 95 (208)
-+|+++|..++|| +++++.++.+. ....|+++.+.....+.+++.. +.+|||+|.+. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 3799999999999 57888777643 2334455557777788888875 68999999764 344567789
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHH-HHHHHHhCC-eEEEEecCCCCC
Q psy2518 96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA-DLLSRALGC-RLMRTSVKEDIN 173 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~-~~~~~~~~~-~~~e~Sa~~~~~ 173 (208)
+.||++++|+|.+++.+..+ .|+..+.+.. +.|+++|+||+|+.+. . ..+. .++. .+++ +++++||++|.|
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~~-~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~g 152 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRKS-TVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNIN 152 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHHH-TCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBS
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc-CCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCC
Confidence 99999999999988655533 2222222222 6899999999998431 1 1222 3343 4677 799999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKCLS 187 (208)
Q Consensus 174 i~~~f~~i~~~~~~ 187 (208)
++++|+.+.+.+..
T Consensus 153 v~~L~~~i~~~l~~ 166 (439)
T 1mky_A 153 LDTMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 99999999988764
No 139
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.76 E-value=3.2e-18 Score=148.22 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=108.6
Q ss_pred eeeeEEEecCceEEEE--EEeeecC--cc---------ccc--cccccccceeeEEEEE-----CCeEEEEEEEeCCChh
Q psy2518 26 AITKAYYRGAQACVIT--FSTIDRD--SF---------EAA--HSWKMKVSIKRTIKEC-----EGEEVRLMLWDTAGQE 85 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk~--~~~~~~~--~f---------~~~--~~~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~g~~ 85 (208)
+..+++++|..++||+ +.+++.. .+ .+. ...+.|+.+......+ ++..+.++||||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4789999999999993 3333321 11 111 1112333333333332 5678999999999999
Q ss_pred hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---e
Q psy2518 86 EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC---R 162 (208)
Q Consensus 86 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~---~ 162 (208)
.|......+++.+|++++|+|.++..+++....|...... +.|+++++||+|+.+.+ ..+...++...+++ +
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~ 157 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATD 157 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcce
Confidence 9999999999999999999999998888877777765543 68999999999996532 34445667777776 4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 163 LMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 163 ~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
++++||++|.|++++|+.+.+.+.
T Consensus 158 vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 158 AVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp CEEECTTTCTTHHHHHHHHHHHSC
T ss_pred EEEeecccCCCchhHHHHHhhcCC
Confidence 999999999999999999988764
No 140
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.76 E-value=7.4e-19 Score=140.90 Aligned_cols=152 Identities=15% Similarity=0.053 Sum_probs=105.3
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccc-cccccccceeeEEEEECCeEEEEEEEeCCChhh--------hcchhHhh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAA-HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--------FDAITKAY 94 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~~ 94 (208)
+..+|+++|.+++|| +++++....+... ..|....+.....+. ....++.+|||||... +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE--eCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 456799999999999 4677777777532 222111122222222 2346799999999765 45566778
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-C-CeEEEEecCCC
Q psy2518 95 YRGAQACVITFSTIDRDSFEAAHSWK-MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-G-CRLMRTSVKED 171 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~e~Sa~~~ 171 (208)
++.+|++++|+|++++.+.. ..|+ ..+.+..++.|+++|+||+|+.+.+. ...+.+..+ + .+++++||++|
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDE 157 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCH
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCC
Confidence 99999999999999875544 3454 44554434789999999999854322 022333332 3 37999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTKC 185 (208)
Q Consensus 172 ~~i~~~f~~i~~~~ 185 (208)
.|++++|+.+.+.+
T Consensus 158 ~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 158 RQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999988765
No 141
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.76 E-value=4e-19 Score=144.59 Aligned_cols=153 Identities=13% Similarity=0.150 Sum_probs=112.4
Q ss_pred eeeEEEecCceEEE--EEEeeecCccc-cccc-cccccceeeEEEEECCeEEEEEEEeCCChhh----hcchhHhhhc--
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----FDAITKAYYR-- 96 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~~~~~~-- 96 (208)
+.+|.++|.+++|| +++++....+. ..|. +|+.. ....+.+++. ..+.+|||+|... +..+...+++
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p--~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i 234 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVP--NLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHI 234 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCC--CEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCc--eEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHH
Confidence 45788999999999 34555444332 2232 33322 2233455442 3689999999754 3345566655
Q ss_pred -CCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEe
Q psy2518 97 -GAQACVITFSTID---RDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG--CRLMRTS 167 (208)
Q Consensus 97 -~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~S 167 (208)
.++++++|+|+++ +++++.+..|+.++..+.+ +.|+++|+||+|+.+. .+..+++++.++ .+++++|
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iS 310 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPIS 310 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCS
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEE
Confidence 4999999999998 7899999999999987653 7999999999998542 245666777776 6899999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy2518 168 VKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 168 a~~~~~i~~~f~~i~~~~~ 186 (208)
|+++.|++++|+.+.+.+.
T Consensus 311 A~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 311 AVTREGLRELLFEVANQLE 329 (342)
T ss_dssp SCCSSTTHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999988874
No 142
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=130.76 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=106.0
Q ss_pred CccccceeeeEEEecCceEEE--EEEeeecCcccccccc--ccccceeeEEEEECCeEEEEEEEeCCC-----------h
Q psy2518 20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSW--KMKVSIKRTIKECEGEEVRLMLWDTAG-----------Q 84 (208)
Q Consensus 20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~g-----------~ 84 (208)
.+..-...+||+++|.+|+|| +++++.+..+.....+ +++.+.....+.+++. .+.|||||| .
T Consensus 22 ~~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~ 99 (239)
T 3lxx_A 22 RQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETS 99 (239)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHH
T ss_pred cCCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHH
Confidence 344556789999999999999 4677777777665555 4444555556666665 479999999 3
Q ss_pred hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCC------HHHHHHH
Q psy2518 85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVA------PEEADLL 155 (208)
Q Consensus 85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~------~~~~~~~ 155 (208)
+.+......+++++|++|+|+|+++.... ...|+..+.+..+ ..|+++|+||+|+.+.+.+. .+..+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 45555566667889999999999764442 1233333332221 46999999999986544433 2467778
Q ss_pred HHHhCCeEEEEecCCC-----CCHHHHHHHHHHHHH
Q psy2518 156 SRALGCRLMRTSVKED-----INVNSIFRYLTTKCL 186 (208)
Q Consensus 156 ~~~~~~~~~e~Sa~~~-----~~i~~~f~~i~~~~~ 186 (208)
++..+..|+.+++..+ .++.++|..+.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 178 MDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp HHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 8888888888877754 688889888776654
No 143
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=6e-20 Score=150.77 Aligned_cols=161 Identities=12% Similarity=0.091 Sum_probs=93.7
Q ss_pred ceeeeEEEecCceEEE--EEEe-eecCcccccc--------ccccccceeeEEEEECCeEEEEEEEeCCCh-------hh
Q psy2518 25 DAITKAYYRGAQACVI--TFST-IDRDSFEAAH--------SWKMKVSIKRTIKECEGEEVRLMLWDTAGQ-------EE 86 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~-~~~~~f~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~-------~~ 86 (208)
...++|+++|.+|+|| ++++ +..+.|...+ .+|++.+.....+..++..+.+.+|||+|. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4568999999999999 3444 2334454443 267766655555666788889999999999 77
Q ss_pred hcchhH-------hhhcCCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCCC
Q psy2518 87 FDAITK-------AYYRGAQAC-----------VITFSTID-RDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQSV 146 (208)
Q Consensus 87 ~~~~~~-------~~~~~~d~i-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~~ 146 (208)
+..+.. .+++.++++ +++|++++ ..++..+. .|+..+ ....|+|+|+||+|+...+.
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH
Confidence 777766 666655443 46666665 55666554 444443 24789999999999966544
Q ss_pred CCH--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 147 VAP--EEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 147 v~~--~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
+.. +++.+++..++++++++||++|.+ ++.|..+.+.+....
T Consensus 192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 443 466667777789999999999999 999999988886544
No 144
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.74 E-value=1.1e-17 Score=139.50 Aligned_cols=157 Identities=14% Similarity=0.112 Sum_probs=101.9
Q ss_pred ceeeeEEEecCceEEE--EEEeee---cCcccccccc--ccccceeeEEEEE-------------C--C----eEEEEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTID---RDSFEAAHSW--KMKVSIKRTIKEC-------------E--G----EEVRLML 78 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~---~~~f~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~i 78 (208)
...++|.++|..++|| ++.++. .+.+.+++.+ |++..+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 4578999999999999 334443 3445555555 6665554443322 1 2 2378999
Q ss_pred EeCCChhhhcchhHhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC--CCHHHH
Q psy2518 79 WDTAGQEEFDAITKAYYRGAQACVITFSTID----RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV--VAPEEA 152 (208)
Q Consensus 79 ~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~--v~~~~~ 152 (208)
|||||++.|.......++.+|++++|+|+++ +++++.+..| . .....|+++++||+|+.+... ...+++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~-~l~~~~iivv~NK~Dl~~~~~~~~~~~~i 160 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----E-ILGIDKIIIVQNKIDLVDEKQAEENYEQI 160 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----H-HTTCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----H-HcCCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence 9999999998777777788999999999995 4555554433 1 222458999999999965433 234556
Q ss_pred HHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 153 DLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 153 ~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
.++++.. +++++++||++|.|++++|+.+.+.+.
T Consensus 161 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 161 KEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6666542 568999999999999999999887654
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.73 E-value=9.2e-18 Score=145.20 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=111.1
Q ss_pred ceeeeEEEecCceEEE--EEEeeecC--ccc---------ccc--cccccccee--eEEEEE---CCeEEEEEEEeCCCh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRD--SFE---------AAH--SWKMKVSIK--RTIKEC---EGEEVRLMLWDTAGQ 84 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~--~f~---------~~~--~~t~~~~~~--~~~~~~---~~~~~~l~i~Dt~g~ 84 (208)
....++.++|..++|| ++.+++.. .+. +.. ....|+.+. ...+.+ ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 4578999999999999 23443321 111 100 001122221 122222 567899999999999
Q ss_pred hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---
Q psy2518 85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC--- 161 (208)
Q Consensus 85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~--- 161 (208)
+.|......+++.+|++++|+|.++..+++....|...... +.|+++++||+|+...+ ..+...++...+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~ 158 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ---DLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPE 158 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---TCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC---CCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcc
Confidence 99998888999999999999999999888888777665543 68999999999996532 33445566666676
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 162 RLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 162 ~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
+++++||++|.|++++|+.+++.+.
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cEEEEEeecCCCchHHHHHHHHhcc
Confidence 4899999999999999999988764
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.73 E-value=6.6e-19 Score=148.56 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=104.0
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchh--------
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT-------- 91 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~-------- 91 (208)
..+..+||+++|..++|| +++++....+. ....++.+.++....+.+++.+ +.+|||+|...+....
T Consensus 220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~ 297 (462)
T 3geh_A 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERS 297 (462)
T ss_dssp HHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC-------------------
T ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHH
Confidence 345678999999999999 45666655443 2333555557777777888865 6999999986654332
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED 171 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 171 (208)
..+++.+|++++|+|.+++.+... ..|+..+. ..|+++|+||+|+...+.+. ....+. .+.+++++||++|
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg 368 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGD-QEIYEQVK----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQK 368 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTT
T ss_pred hhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCC
Confidence 235789999999999999877654 44555443 47999999999996644432 111111 3468999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTKCLS 187 (208)
Q Consensus 172 ~~i~~~f~~i~~~~~~ 187 (208)
.|++++|+.+.+.+..
T Consensus 369 ~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 369 QGIDSLETAILEIVQT 384 (462)
T ss_dssp BSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999987653
No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.72 E-value=4.9e-18 Score=133.24 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=105.4
Q ss_pred CccccceeeeEEEecCceEEE--EEEeeecCc-cccccccc-cccceeeEEEEECCeEEEEEEEeCCChhhhcc------
Q psy2518 20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDS-FEAAHSWK-MKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA------ 89 (208)
Q Consensus 20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~-f~~~~~~t-~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------ 89 (208)
++..-...++|+++|.+++|| +++++.... |...+.++ +..+.....+..++. .+.||||||+..+..
T Consensus 15 ~~~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~ 92 (260)
T 2xtp_A 15 GQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALY 92 (260)
T ss_dssp ------CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHH
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHH
Confidence 334445679999999999999 456666665 55555554 444555555566654 589999999865432
Q ss_pred -----hhHhhhcCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCEEEEE-eCCCCCCCCCCCH-------HHHHHH
Q psy2518 90 -----ITKAYYRGAQACVITFSTIDRDSF-EAAHSWKMKVENECGEIPTVLVQ-NKIDLLDQSVVAP-------EEADLL 155 (208)
Q Consensus 90 -----~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~piivvg-nK~Dl~~~~~v~~-------~~~~~~ 155 (208)
....+++.+|++++|+|+++.... ..+..|+..........|.+++. ||+|+.+. .+.. +++..+
T Consensus 93 ~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 93 KEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHH
Confidence 223367899999999999862222 22233444332211134555555 59999642 2222 334456
Q ss_pred HHHhCCe---E--EEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518 156 SRALGCR---L--MRTSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 156 ~~~~~~~---~--~e~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
+...+.. + +++||++|.|++++|..+.+.+...
T Consensus 172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 6666543 2 7899999999999999999887653
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.72 E-value=3.2e-18 Score=145.58 Aligned_cols=153 Identities=12% Similarity=0.033 Sum_probs=97.1
Q ss_pred ceeeeEEEecCceEEE--EEEeeecC--ccccccc---------------------------cccccceeeEEEEECCeE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRD--SFEAAHS---------------------------WKMKVSIKRTIKECEGEE 73 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~--~f~~~~~---------------------------~t~~~~~~~~~~~~~~~~ 73 (208)
...+||+++|..++|| ++.+++.. .+.+.+. ...|+.+......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4579999999999999 34444333 2221111 111333333444455556
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHH-----HHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-----HSWKMKVENECGEIPTVLVQNKIDLLDQSVVA 148 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-----~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~ 148 (208)
+.+.||||||+++|......+++.+|++++|+|+++..++..+ ..+...+.......|+++|+||+|+.+.++..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 7899999999999999999999999999999999997654321 11222222223346799999999996533333
Q ss_pred HHHHHH----HHHHh-----CCeEEEEecCCCCCHHHH
Q psy2518 149 PEEADL----LSRAL-----GCRLMRTSVKEDINVNSI 177 (208)
Q Consensus 149 ~~~~~~----~~~~~-----~~~~~e~Sa~~~~~i~~~ 177 (208)
.++..+ +.... +++++++||++|.|++++
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 333332 33333 357999999999999864
No 149
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=7.2e-19 Score=147.81 Aligned_cols=151 Identities=14% Similarity=0.093 Sum_probs=97.0
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChh--------hhcchhHhhhc
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE--------EFDAITKAYYR 96 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~--------~~~~~~~~~~~ 96 (208)
..+|+++|..++|| +++++.+..+. ...++.|+...............+.+|||+|++ .+......+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 46899999999999 46777666553 234444443333333333333468999999985 66677788899
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHH
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVN 175 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~ 175 (208)
.||++++|+|.+++.++.. .|+..+.+. .+.|+++|+||+|+.+.+. +..++. .+++ +++++||++|.|+.
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~-~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILYR-TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHTT-CCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH-cCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence 9999999999998777653 344443332 2789999999999854321 111222 3566 78999999999999
Q ss_pred HHHHHHHHHHH
Q psy2518 176 SIFRYLTTKCL 186 (208)
Q Consensus 176 ~~f~~i~~~~~ 186 (208)
++|+.+.+.+.
T Consensus 154 ~L~~~i~~~l~ 164 (436)
T 2hjg_A 154 DLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHhcC
Confidence 99999988764
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.71 E-value=3.5e-17 Score=137.66 Aligned_cols=159 Identities=16% Similarity=0.063 Sum_probs=105.4
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch-----------
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI----------- 90 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~----------- 90 (208)
...+|++++|.+|+|| +++++.+..+. ....|+.+.+.....+.++|.. +.+|||+|..++...
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHH
Confidence 3468999999999999 45666665542 1222333345566777888875 689999997543321
Q ss_pred h-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH-HHHH----hCCeEE
Q psy2518 91 T-KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL-LSRA----LGCRLM 164 (208)
Q Consensus 91 ~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~-~~~~----~~~~~~ 164 (208)
. ..+++.+|++++|+|.++..+.+.. .+...+.. .+.|+++|+||+|+.+.+....++..+ +... .+++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 1 2467889999999999987776543 22222222 268999999999997655444444332 2232 246899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q psy2518 165 RTSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 165 e~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
++||++|.|++++|+.+.+.+...
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998876543
No 151
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.71 E-value=1.6e-17 Score=141.00 Aligned_cols=156 Identities=12% Similarity=0.047 Sum_probs=106.2
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCc-------cccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHh
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDS-------FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~-------f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~ 93 (208)
.....++|.++|..++|| ++.++.... +..+..+.+.++.....+.+++ ..+.+|||||++.|......
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 345689999999999999 345554444 3334444333344444455555 56999999999999888888
Q ss_pred hhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC--CCCHHHHHHHHHHh----CCeEE
Q psy2518 94 YYRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS--VVAPEEADLLSRAL----GCRLM 164 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~--~v~~~~~~~~~~~~----~~~~~ 164 (208)
.++.+|++++|+|+++ +++++.+. .+.. .+.|+++++||+|+.++. ....++..+++... +.+++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHH----HHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 9999999999999998 55555443 2222 257889999999985421 11123344555544 56899
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q psy2518 165 RTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 165 e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
++||++|.|++++++.+.+.+.
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHhhc
Confidence 9999999999999999988775
No 152
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.70 E-value=9.4e-17 Score=133.64 Aligned_cols=163 Identities=10% Similarity=0.021 Sum_probs=108.8
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccc---cccccccccc------------eeeEEEEE---CCeEEEEEEEeCC
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFE---AAHSWKMKVS------------IKRTIKEC---EGEEVRLMLWDTA 82 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~---~~~~~t~~~~------------~~~~~~~~---~~~~~~l~i~Dt~ 82 (208)
..+..+||.++|..++|| +++++...... .....+++.. ........ ......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 346689999999999999 34444332111 1111111100 00000000 1234789999999
Q ss_pred ChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC--HHHHHHHHHHh-
Q psy2518 83 GQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA--PEEADLLSRAL- 159 (208)
Q Consensus 83 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~--~~~~~~~~~~~- 159 (208)
|++.|.......++.+|++++|+|.++..++.....|+..+.... ..|+++++||+|+.+..... .++..++....
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~ 162 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW 162 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTST
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999877777777776655442 36899999999985422110 11122222221
Q ss_pred --CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 160 --GCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 160 --~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
+++++++||++|.|++++|+.+.+.+.
T Consensus 163 ~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 163 AENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 568999999999999999999887654
No 153
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.9e-18 Score=129.17 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=85.4
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCcccc---ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC-
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEA---AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG- 97 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~- 97 (208)
....+||+++|.+|+|| +++++....+.. .+.++++.++ ..+.+.+|||+|++.+...+..+++.
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35678999999999999 456666666654 3444544332 44578999999999998888888776
Q ss_pred ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhc-----CCCCEEEEEeCCCCCCCCC
Q psy2518 98 ---AQACVITFSTI-DRDSFEAAHSWKMKVENEC-----GEIPTVLVQNKIDLLDQSV 146 (208)
Q Consensus 98 ---~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~piivvgnK~Dl~~~~~ 146 (208)
+|++++|||++ ++.++..+..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 8999999988887776542 3799999999999966543
No 154
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.69 E-value=2.5e-18 Score=136.09 Aligned_cols=158 Identities=10% Similarity=0.125 Sum_probs=90.9
Q ss_pred ceeeeEEEecCceEEE--EEEe-eecCcccccc-------ccccccceeeEEEEECCeEEEEEEEeCCChh-------hh
Q psy2518 25 DAITKAYYRGAQACVI--TFST-IDRDSFEAAH-------SWKMKVSIKRTIKECEGEEVRLMLWDTAGQE-------EF 87 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~-~~~~~f~~~~-------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~-------~~ 87 (208)
...++|+++|.+|+|| ++++ +..+.+...+ .+|++.+.....+..++..+.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 3468999999999999 3444 4456666666 7888888777777777888899999999972 22
Q ss_pred cchh-------Hhhhc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC
Q psy2518 88 DAIT-------KAYYR-------------GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV 147 (208)
Q Consensus 88 ~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v 147 (208)
..+. ..++. .+|+++++++.+...-...-..++..+.. ..|+++|+||+|+......
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~ 162 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence 2222 33333 37899999987653222222334444444 6899999999998432211
Q ss_pred C--HHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 148 A--PEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 148 ~--~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
. .+...+.....+++++++||+++.|++++++.+.+.+
T Consensus 163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 1 1233444556788999999999999999998887654
No 155
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.69 E-value=1.8e-16 Score=130.06 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=105.1
Q ss_pred eee-EEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh---------hhhcchhHhh
Q psy2518 27 ITK-AYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ---------EEFDAITKAY 94 (208)
Q Consensus 27 ~~k-i~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~---------~~~~~~~~~~ 94 (208)
.++ |.++|.+++|| +++++.+..+.....+....+.....+.+++. .+.+|||+|. +.|.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 456 99999999999 45666565553322222233566777888884 4789999996 2343332 35
Q ss_pred hcCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhc-CCCCEEEEEeCCCCCCCCCCC--HHHHHHHHHHh---CCeEEEE
Q psy2518 95 YRGAQACVITFSTIDRD--SFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVA--PEEADLLSRAL---GCRLMRT 166 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~piivvgnK~Dl~~~~~v~--~~~~~~~~~~~---~~~~~e~ 166 (208)
+..+|++++|+|++++. +...+..|...+.... .+.|+++|+||+|+.+.. .. .+.+..++... +.+++++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 78999999999999877 5666666665555443 378999999999985432 11 11233344555 2378999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q psy2518 167 SVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
||+++.|++++++.+.+.+..
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHhcc
Confidence 999999999999999887654
No 156
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.69 E-value=1.8e-19 Score=154.08 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=114.6
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii 102 (208)
.+..+|+++|..++|| +++++....+...+.++++.++....+..++. ..+.||||||++.|..++..+++.+|+++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 3567899999999999 46777778887777787777766665555322 25899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC--CCCHHHHHHH---HHHh--CCeEEEEecCCCCCHH
Q psy2518 103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS--VVAPEEADLL---SRAL--GCRLMRTSVKEDINVN 175 (208)
Q Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~--~v~~~~~~~~---~~~~--~~~~~e~Sa~~~~~i~ 175 (208)
+|+|.++....+....| ..+.. .+.|+++++||+|+.+.+ .+..+ ...+ +..+ .++++++||++|.|++
T Consensus 81 LVVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~-l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 81 LVVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPEKVKKE-LLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp EECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCCSSSSH-HHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchHHHHHH-HHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 99999987665544333 22222 168999999999986422 12211 1111 1112 2479999999999999
Q ss_pred HHHHHHHHHH
Q psy2518 176 SIFRYLTTKC 185 (208)
Q Consensus 176 ~~f~~i~~~~ 185 (208)
++|+.+...+
T Consensus 157 eLle~I~~l~ 166 (537)
T 3izy_P 157 ALAEATIALA 166 (537)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHhh
Confidence 9999988765
No 157
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.68 E-value=9.5e-17 Score=133.89 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=107.8
Q ss_pred ceeeeEEEecCceEEE--EEEeee---cCcccccccc--ccccceeeEEEEE-------------C--C----eEEEEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTID---RDSFEAAHSW--KMKVSIKRTIKEC-------------E--G----EEVRLML 78 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~---~~~f~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~i 78 (208)
...++|.++|..++|| ++.++. .+.+.+++.+ |++..+....+.. + + ....+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 5679999999999999 344444 3455556556 6655544433321 1 1 1378999
Q ss_pred EeCCChhhhcchhHhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC--CCHHHH
Q psy2518 79 WDTAGQEEFDAITKAYYRGAQACVITFSTID----RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV--VAPEEA 152 (208)
Q Consensus 79 ~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~--v~~~~~ 152 (208)
|||||++.|.......++.+|++++|+|+++ +++.+.+..|. . ....|+++++||+|+.+... ...++.
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~----~-~~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ----I-IGQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH----H-HTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH----H-cCCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 9999999998777777888999999999995 44555544331 1 22468999999999855321 112333
Q ss_pred HHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 153 DLLSRA---LGCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 153 ~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
.++++. .+++++++||++|.|++++++.+.+.+.
T Consensus 163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 444443 3568999999999999999999887654
No 158
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.68 E-value=3.7e-17 Score=140.01 Aligned_cols=117 Identities=10% Similarity=0.047 Sum_probs=81.8
Q ss_pred cceeeeEEEecCceEEE--EEEeee------------------cCccccccc--cccccceeeEEEEECCeEEEEEEEeC
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTID------------------RDSFEAAHS--WKMKVSIKRTIKECEGEEVRLMLWDT 81 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~------------------~~~f~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt 81 (208)
..+..+|+++|..++|| ++.+++ ...+.+... ...|+.+......+....+.++||||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 45678999999999999 344442 111111111 01222333333444444567999999
Q ss_pred CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518 82 AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 82 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~ 143 (208)
||++.|......+++.+|++++|+|.++..+.+....|.. +... +.|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~~--~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRLR--HTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHTT--TCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHHc--CCCEEEEEeCCCCcc
Confidence 9999999999999999999999999999877777665543 3322 689999999999854
No 159
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.67 E-value=6.7e-17 Score=135.82 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=101.3
Q ss_pred cceeeeEEEecCceEEE--EEEeee-------------------------------cCccccccccccccceeeEEEEEC
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTID-------------------------------RDSFEAAHSWKMKVSIKRTIKECE 70 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~-------------------------------~~~f~~~~~~t~~~~~~~~~~~~~ 70 (208)
-...++|+++|..++|| ++.+++ .+.+.++..+.++++.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35678999999999999 334441 122333334445555555555444
Q ss_pred CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCC-EEEEEeCCCCCC
Q psy2518 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS---FE---AAHSWKMKVENECGEIP-TVLVQNKIDLLD 143 (208)
Q Consensus 71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~ 143 (208)
+ ..+.||||||+++|.......++.+|++++|+|.++... |+ ...+.+..+.. . ..| +++++||+|+..
T Consensus 94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~-~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-A-GVKHLIVLINKMDDPT 169 (439)
T ss_pred C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-c-CCCeEEEEeecCCCcc
Confidence 4 479999999999999988889999999999999998532 22 11222222221 1 466 999999999843
Q ss_pred CC------CCCHHHHHHHHHHhC------CeEEEEecCCCCCHHHHHH
Q psy2518 144 QS------VVAPEEADLLSRALG------CRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 144 ~~------~v~~~~~~~~~~~~~------~~~~e~Sa~~~~~i~~~f~ 179 (208)
.. ....++...+++..+ ++++++||++|.|+.++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11 111233444555554 4699999999999999766
No 160
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=1.4e-17 Score=140.73 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=100.3
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC--------hhhhcchhH
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG--------QEEFDAITK 92 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g--------~~~~~~~~~ 92 (208)
..+...+|+++|.+++|| +++++....+. ....+.|+.........+.....+.+|||+| ++.+.....
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 345678999999999999 46666666654 2344555555555555655556799999999 788888889
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKED 171 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~ 171 (208)
.+++.+|++|+|+|..+..+. ...|+....+. .+.|+++|+||+|+.+.+ +...++ ...++ ..+++||++|
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~-~~~pvilV~NK~D~~~~~----~~~~e~-~~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTA--ADEEVAKILYR-TKKPVVLAVNKLDNTEMR----ANIYDF-YSLGFGEPYPISGTHG 169 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT-CCSCEEEEEECC-------------CCS-GGGSSSSEEECCTTTC
T ss_pred hhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH-cCCCEEEEEECccchhhh----hhHHHH-HHcCCCceEEeecccc
Confidence 999999999999998764333 33455444433 378999999999985421 111111 12344 6789999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy2518 172 INVNSIFRYLTTKCL 186 (208)
Q Consensus 172 ~~i~~~f~~i~~~~~ 186 (208)
.|+.++|+.+.+.+.
T Consensus 170 ~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTHHHHHHHHHTTGG
T ss_pred cchHHHHHHHHhhcc
Confidence 999999999887653
No 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.65 E-value=1.3e-17 Score=140.14 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=102.4
Q ss_pred ceeeeEEEecCceEEE--EEEeeecC--cccccc-----------------------------ccccccceeeEEEEECC
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRD--SFEAAH-----------------------------SWKMKVSIKRTIKECEG 71 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~--~f~~~~-----------------------------~~t~~~~~~~~~~~~~~ 71 (208)
...++|+++|..++|| ++.+++.+ .+.+.+ .+.+.++.... .++.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~--~~~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFM--RFET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------C--EEEC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEE--EEec
Confidence 3568999999999999 34555432 332211 11122222222 3344
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc------CCCCEEEEEeCCCCCCCC
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC------GEIPTVLVQNKIDLLDQS 145 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~------~~~piivvgnK~Dl~~~~ 145 (208)
....+.||||||+++|......+++.+|++++|+|+++ .+|+....|..+..++. +-.|+++++||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 45679999999999999988899999999999999998 78886655544433322 234689999999996521
Q ss_pred ------CCCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy2518 146 ------VVAPEEADLLSRALG-----CRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 146 ------~v~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~ 179 (208)
....++..++++..+ ++++++||++|.|+.+++.
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112345666777666 5799999999999987654
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.64 E-value=4.6e-17 Score=135.56 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=100.1
Q ss_pred ceeeeEEEecCceEEE--EEEeeecC--------ccccc-------cccccccceeeEEEEECCeEEEEEEEeCCChhhh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRD--------SFEAA-------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF 87 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~--------~f~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~ 87 (208)
...++|.++|..++|| ++.++... .|... ...+.|+.+......++.....+.||||||++.|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 4579999999999999 34444331 22110 1123333333444555555567899999999999
Q ss_pred cchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCC---CCHHHHHHHHHHhC---
Q psy2518 88 DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSV---VAPEEADLLSRALG--- 160 (208)
Q Consensus 88 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~---v~~~~~~~~~~~~~--- 160 (208)
.......++.+|++++|+|.++....+ ..+|+..+... +.| +++++||+|+.+... ...++..++++.++
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 165 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence 888888999999999999999875443 34555554433 577 899999999864211 11234555666665
Q ss_pred --CeEEEEecCCCCC
Q psy2518 161 --CRLMRTSVKEDIN 173 (208)
Q Consensus 161 --~~~~e~Sa~~~~~ 173 (208)
++++++||++|.|
T Consensus 166 ~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 166 DEVPVIRGSALLALE 180 (405)
T ss_dssp TTSCEEECCHHHHHH
T ss_pred cCCCEEEccHHHhhh
Confidence 5899999999987
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.64 E-value=1.7e-16 Score=123.70 Aligned_cols=161 Identities=12% Similarity=0.035 Sum_probs=98.9
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccc--eeeEEEEECCeEEEEEEEeCCCh--------hhhcchhH
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVS--IKRTIKECEGEEVRLMLWDTAGQ--------EEFDAITK 92 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~g~--------~~~~~~~~ 92 (208)
...++|+++|.+|+|| +++++....+.....++.++. ........++ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 5679999999999999 456666666654433332222 2233444454 45899999996 33333333
Q ss_pred hhh----cCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhc-CCCCEEEEEeCCCCCCCCC------CCHHHHHHHHHHhC
Q psy2518 93 AYY----RGAQACVITFSTIDRDSF-EAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSV------VAPEEADLLSRALG 160 (208)
Q Consensus 93 ~~~----~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~-~~~piivvgnK~Dl~~~~~------v~~~~~~~~~~~~~ 160 (208)
.++ +++|++|+|+|+++.... ..+.+|+..+.... .+.|+++++||.|+.+... ...+..+.+.+..+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 333 899999999999853221 12223333332111 1579999999999955211 11134566777788
Q ss_pred CeEEEEecCC-----CCCHHHHHHHHHHHHHH
Q psy2518 161 CRLMRTSVKE-----DINVNSIFRYLTTKCLS 187 (208)
Q Consensus 161 ~~~~e~Sa~~-----~~~i~~~f~~i~~~~~~ 187 (208)
..|+.++++. +.++.++++.+.+.+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 8787777655 57899999988777654
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.62 E-value=2.3e-16 Score=129.79 Aligned_cols=145 Identities=4% Similarity=-0.024 Sum_probs=103.0
Q ss_pred eEEEecCceEEE-E-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518 29 KAYYRGAQACVI-T-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106 (208)
Q Consensus 29 ki~~vG~s~~gk-~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d 106 (208)
+|.++|..++|| + +.++. ++..|++..+ ..+..+ ...+.||||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~--~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM--YNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE--EEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE--EEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 999999999999 2 34333 4455664333 333333 3469999999999998877888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCE-EEEEe-CCCCCCCCCCCH--HHHHHHHHHhC---CeEEE--EecCC---CCCH
Q psy2518 107 TIDRDSFEAAHSWKMKVENECGEIPT-VLVQN-KIDLLDQSVVAP--EEADLLSRALG---CRLMR--TSVKE---DINV 174 (208)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~~~~~~pi-ivvgn-K~Dl~~~~~v~~--~~~~~~~~~~~---~~~~e--~Sa~~---~~~i 174 (208)
+ ...+....+|+..+... ..|. +++.| |+|+ +.+.+.. ++..++++..+ +++++ +||++ +.|+
T Consensus 93 -~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 93 -P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp -T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred -C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 4 34455556666555443 5676 88888 9998 4322221 34444444443 58999 99999 9999
Q ss_pred HHHHHHHHHHHHHH
Q psy2518 175 NSIFRYLTTKCLSE 188 (208)
Q Consensus 175 ~~~f~~i~~~~~~~ 188 (208)
+++++.+.+.+...
T Consensus 168 ~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 168 DELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc
Confidence 99999998886543
No 165
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.62 E-value=1.5e-16 Score=127.50 Aligned_cols=153 Identities=12% Similarity=0.140 Sum_probs=100.9
Q ss_pred eeeEEEecCceEEE--EEEeeecCccccc-cccccccceeeEEEEECCeEEEEEEEeCCChh-h--------hcchhHhh
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSFEAA-HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE-E--------FDAITKAY 94 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~-~--------~~~~~~~~ 94 (208)
..+|.++|..++|| +++++.+..+... ..+....+.....+..+ ..++.+|||||.. . +......+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 44799999999999 4566666655421 11211112122223333 4578999999987 2 33344567
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2518 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDIN 173 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 173 (208)
++.+|++++|+|.++ +.....|+...... .+.|+++++||+|+...+....+...+++..+++ .++++||++|.|
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~-~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE-GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS-SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh-cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 889999999999977 32333444333321 2689999999999854222223444555555676 799999999999
Q ss_pred HHHHHHHHHHHH
Q psy2518 174 VNSIFRYLTTKC 185 (208)
Q Consensus 174 i~~~f~~i~~~~ 185 (208)
++++++.+.+.+
T Consensus 162 v~~l~~~i~~~l 173 (301)
T 1ega_A 162 VDTIAAIVRKHL 173 (301)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC
Confidence 999999988654
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.62 E-value=2e-16 Score=132.86 Aligned_cols=155 Identities=13% Similarity=0.069 Sum_probs=99.6
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCc---cccc---------cccccc-------------------cceeeEEEEEC
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDS---FEAA---------HSWKMK-------------------VSIKRTIKECE 70 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~---f~~~---------~~~t~~-------------------~~~~~~~~~~~ 70 (208)
-...++|+++|..++|| ++.++..+. +... ..+|.+ +........+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 35679999999999999 344443332 1110 112211 11111122233
Q ss_pred CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC--C-
Q psy2518 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV--V- 147 (208)
Q Consensus 71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~--v- 147 (208)
.....+.||||||++.|......+++.+|++++|+|+++....+ ...|+..+... ...|+++|+||+|+.+... .
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL-GIKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHH
Confidence 34467899999999999888888999999999999999865333 33444433322 2346899999999965211 1
Q ss_pred -CHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHHH
Q psy2518 148 -APEEADLLSRALG-----CRLMRTSVKEDINVNSIFRY 180 (208)
Q Consensus 148 -~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~~ 180 (208)
..++..++++.++ ++++++||++|.|+.++|..
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 1344556667777 58999999999999986543
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.62 E-value=6.4e-16 Score=133.90 Aligned_cols=157 Identities=15% Similarity=0.059 Sum_probs=103.6
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccc----cccccccceeeEEE------------EECCeEEEEEEEeCCChhhh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAA----HSWKMKVSIKRTIK------------ECEGEEVRLMLWDTAGQEEF 87 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~----~~~t~~~~~~~~~~------------~~~~~~~~l~i~Dt~g~~~~ 87 (208)
+..+|.++|..++|| ++.++....+.+. ..+++|..+..... .++.....++||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 457899999999999 3455544444332 22344422221100 00111225899999999999
Q ss_pred cchhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC-------------HH-
Q psy2518 88 DAITKAYYRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA-------------PE- 150 (208)
Q Consensus 88 ~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~-------------~~- 150 (208)
..++...++.+|++++|+|+++ +++++.+..+ .. .+.|+++++||+|+....... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 9999989999999999999999 7777665432 22 268999999999985421110 10
Q ss_pred ---------HHHHHHHHhC---------------CeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518 151 ---------EADLLSRALG---------------CRLMRTSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 151 ---------~~~~~~~~~~---------------~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
+......+.+ ++++++||++|.|++++++.+...+...
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 0111111122 2799999999999999999998877543
No 168
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.61 E-value=2.6e-16 Score=130.71 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=102.6
Q ss_pred eeeEEEecCceEEE--EEEeeecC-------cccc-----------ccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRD-------SFEA-----------AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE 86 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~-------~f~~-----------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 86 (208)
.+||.++|..++|| ++.++... .|.. +...|++ .....++.....+.||||||++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~----~~~~~~~~~~~~~~iiDtpG~~~ 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN----AAHVEYSTAARHYAHTDCPGHAD 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEE----CEEEEEECSSCEEEEEECSSHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEE----eeeEEeccCCeEEEEEECCChHH
Confidence 58999999999999 33444332 1111 1122332 22334444456789999999999
Q ss_pred hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCC---CCHHHHHHHHHHhC--
Q psy2518 87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSV---VAPEEADLLSRALG-- 160 (208)
Q Consensus 87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~---v~~~~~~~~~~~~~-- 160 (208)
|.......++.+|++++|+|.++....+....| ..+... +.| +++++||+|+.+... ...++..++++.++
T Consensus 79 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 79 YVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 988888889999999999999986544433333 333322 577 789999999864211 11245566777666
Q ss_pred ---CeEEEEecCCCCC----------HHHHHHHHHHHH
Q psy2518 161 ---CRLMRTSVKEDIN----------VNSIFRYLTTKC 185 (208)
Q Consensus 161 ---~~~~e~Sa~~~~~----------i~~~f~~i~~~~ 185 (208)
++++++||++|.| +.++++.+.+.+
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999775 788888776654
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.61 E-value=4.1e-17 Score=130.23 Aligned_cols=163 Identities=14% Similarity=0.068 Sum_probs=104.3
Q ss_pred CccccceeeeEEEecCceEEE--EEEeeecCccccc------ccccc-----------------c---cce---------
Q psy2518 20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAA------HSWKM-----------------K---VSI--------- 62 (208)
Q Consensus 20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~------~~~t~-----------------~---~~~--------- 62 (208)
|........+|+++|..++|| +++++.+..|.+. ..|+. | .++
T Consensus 19 ~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~ 98 (299)
T 2aka_B 19 GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEA 98 (299)
T ss_dssp CCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHH
Confidence 444556788999999999999 4677777777422 12320 0 000
Q ss_pred --------------eeEEEEEC-CeEEEEEEEeCCChh-------------hhcchhHhhhcCCcEEE-EEEeCCChhhH
Q psy2518 63 --------------KRTIKECE-GEEVRLMLWDTAGQE-------------EFDAITKAYYRGAQACV-ITFSTIDRDSF 113 (208)
Q Consensus 63 --------------~~~~~~~~-~~~~~l~i~Dt~g~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~ 113 (208)
....+.+. .....+.+|||||.. .+..+...+++.++.++ +|+|.++..+.
T Consensus 99 ~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~ 178 (299)
T 2aka_B 99 ETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLAN 178 (299)
T ss_dssp HHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGG
T ss_pred HHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhh
Confidence 00011111 112579999999953 45567778888888776 79999876554
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH--hCC-eEEEEecCCCCCHHHHHHHHHHH
Q psy2518 114 EAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA--LGC-RLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 114 ~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~--~~~-~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
.....|+..+.. .+.|+++|+||+|+.+.+....+..+..... .+. +++++||++|.|++++|+.+.+.
T Consensus 179 ~~~~~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 179 SDALKIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp CHHHHHHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred hHHHHHHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 443345544432 2689999999999966444333332211011 132 67899999999999999998874
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=7.5e-16 Score=116.58 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=98.6
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChh----------hhcchh
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE----------EFDAIT 91 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~----------~~~~~~ 91 (208)
.....+++++|.+|+|| +++++.+..|...+.|+.|.......+.+++ .+.+|||+|.. .+....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 45567999999999999 4566666666666778888666555555554 47899999973 233333
Q ss_pred Hhhh---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCC--CCCCHHHHHHHHHHhC--Ce
Q psy2518 92 KAYY---RGAQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQ--SVVAPEEADLLSRALG--CR 162 (208)
Q Consensus 92 ~~~~---~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~--~~v~~~~~~~~~~~~~--~~ 162 (208)
..++ ..++++++++|++++.++.. +..|+.. ...|+++++||+|+... ++...+.+..++...+ +.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 3444 57899999999998766542 3334321 26899999999997542 1112234555555554 47
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 163 LMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 163 ~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
++++||+++.|++++++.+.+.+.
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC
T ss_pred eEEEeecCCCCHHHHHHHHHHHHh
Confidence 899999999999999999877653
No 171
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.61 E-value=2.5e-17 Score=132.02 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=83.9
Q ss_pred ceeeeEEEecCceEEE-E-EEeeecC-cccccc--------ccccccceeeEEEEECCeEEEEEEEeCCCh-------hh
Q psy2518 25 DAITKAYYRGAQACVI-T-FSTIDRD-SFEAAH--------SWKMKVSIKRTIKECEGEEVRLMLWDTAGQ-------EE 86 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk-~-~~~~~~~-~f~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~-------~~ 86 (208)
.-.++|+++|++|+|| + ++++... .+...+ .+|++.+.....+..++....+.+|||+|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 3468999999999999 3 3442332 444332 234433333333444566788999999998 55
Q ss_pred hcchhH-------hhhcC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC
Q psy2518 87 FDAITK-------AYYRG-------------AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV 146 (208)
Q Consensus 87 ~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~ 146 (208)
+..+.. .+++. +++++++.+.+. .+++.+.. ..+.+.....|+++|+||+|+...++
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 555554 44433 233444444332 23444321 22333334679999999999965433
Q ss_pred C--CHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518 147 V--APEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 147 v--~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
+ ..+++.++++.++++++++||++| |++++|..+.+.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 2 346778889999999999999999 9999999999888643
No 172
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.60 E-value=6.3e-18 Score=143.40 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=103.2
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 103 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~ 103 (208)
+..+|+++|..++|| ++.++....+...+.+++..+.....+..++. .+.||||||++.|..++...++.+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 457899999999999 34555555555554444443443333444443 58999999999999998889999999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--CCCCHHH--HHHHHHHhC--CeEEEEecCCCCCH
Q psy2518 104 TFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ--SVVAPEE--ADLLSRALG--CRLMRTSVKEDINV 174 (208)
Q Consensus 104 v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~--~~v~~~~--~~~~~~~~~--~~~~e~Sa~~~~~i 174 (208)
|+|.++ +++.+.+ ..... .+.|+++++||+|+.+. ..+..+. ...++..++ ++++++||++|.|+
T Consensus 81 VVda~~g~~~qT~e~l----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI 154 (501)
T ss_dssp EEETTTBSCTTTHHHH----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred EeecccCccHHHHHHH----HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence 999988 4444433 22221 26899999999999542 1111110 001122233 68999999999999
Q ss_pred HHHHHHHHH
Q psy2518 175 NSIFRYLTT 183 (208)
Q Consensus 175 ~~~f~~i~~ 183 (208)
+++|+.+..
T Consensus 155 ~eLle~I~~ 163 (501)
T 1zo1_I 155 DELLDAILL 163 (501)
T ss_dssp TTHHHHTTT
T ss_pred chhhhhhhh
Confidence 999998764
No 173
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.60 E-value=6.8e-17 Score=136.78 Aligned_cols=151 Identities=18% Similarity=0.130 Sum_probs=87.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeec--Ccccc-------------------------------ccccccccceeeEEEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDR--DSFEA-------------------------------AHSWKMKVSIKRTIKEC 69 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~--~~f~~-------------------------------~~~~t~~~~~~~~~~~~ 69 (208)
...++|+++|..++|| ++.+++. +.+.+ ....|++.. ...+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~--~~~~~~ 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG--RAYFET 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEEC
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee--eEEEec
Confidence 4578999999999999 3344332 22211 122344332 233444
Q ss_pred CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhc-CCCC-EEEEEeCCCCCCC
Q psy2518 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR---DSFEAAHSWKMKVENEC-GEIP-TVLVQNKIDLLDQ 144 (208)
Q Consensus 70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~p-iivvgnK~Dl~~~ 144 (208)
++ ..+.||||||++.|.......++.+|++|+|+|.++. .+|+...+|...+.... .+.| +++++||+|+...
T Consensus 119 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 119 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV 196 (467)
T ss_dssp SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCc
Confidence 43 5689999999999998888889999999999999986 34443323333222211 2566 9999999998531
Q ss_pred C------CCCHHHHHHHHHHh-C------CeEEEEecCCCCCHHHHHH
Q psy2518 145 S------VVAPEEADLLSRAL-G------CRLMRTSVKEDINVNSIFR 179 (208)
Q Consensus 145 ~------~v~~~~~~~~~~~~-~------~~~~e~Sa~~~~~i~~~f~ 179 (208)
. ....++...+++.. + ++++++||++|.|+.++|+
T Consensus 197 ~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 197 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 1 11123455666665 3 5699999999999998763
No 174
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.60 E-value=5.2e-15 Score=118.60 Aligned_cols=130 Identities=15% Similarity=0.071 Sum_probs=93.9
Q ss_pred ecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHH
Q psy2518 46 DRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVE 124 (208)
Q Consensus 46 ~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~ 124 (208)
..+.|...+.|++| |........++..+.. ..++++..+.+.+++++|++++|||++++. +++.+..|+..+.
T Consensus 34 ~~~~~~~~~~~~vG-D~V~~~~~~~~~g~I~-----~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~ 107 (302)
T 2yv5_A 34 PRGKVLKKTKIYAG-DYVWGEVVDPNTFAIE-----EVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYE 107 (302)
T ss_dssp ECSSSTTSSCCCBT-CEEEEEEEETTEEEEE-----EECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHH
T ss_pred EcCCcccCCCCcCc-eEEEEEEccCCeEEEE-----eeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 35666554447777 3322222222222111 236788888889999999999999999986 8998999998766
Q ss_pred hhcCCCCEEEEEeCCCCCCCCCCC-HHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 125 NECGEIPTVLVQNKIDLLDQSVVA-PEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 125 ~~~~~~piivvgnK~Dl~~~~~v~-~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
. .+.|+++|+||+|+.+++.+. .++..++++..+++++++||++|.|++++|..+..
T Consensus 108 ~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 108 Y--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp H--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred h--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 5 378999999999996533222 34555666777899999999999999999987643
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.60 E-value=1.5e-15 Score=133.62 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=86.1
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccc-------------ccccc---ccccceeeEEEEECCeEEEEEEEeCCChh
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFE-------------AAHSW---KMKVSIKRTIKECEGEEVRLMLWDTAGQE 85 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-------------~~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 85 (208)
.....++.++|.+++|| ++.++...... ..+.+ ..++.+......+....+.++||||+|++
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 45678999999999999 23443322111 01111 12334444555555456789999999999
Q ss_pred hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy2518 86 EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA 158 (208)
Q Consensus 86 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~ 158 (208)
.|......+++.+|++++|+|.++....... .|+..+... +.|+++++||+|+. ....+..++++..
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~--~ip~ilv~NKiD~~---~~~~~~~~~l~~~ 152 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL--GLPRMVVVTKLDKG---GDYYALLEDLRST 152 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT--TCCEEEEEECGGGC---CCHHHHHHHHHHH
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc--cCCEEEEecCCchh---hhHHHHHHHHHHH
Confidence 9998889999999999999999876554433 444444432 68999999999985 2334444444443
No 176
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.5e-16 Score=137.08 Aligned_cols=152 Identities=14% Similarity=0.043 Sum_probs=96.2
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccc-------------------------------cccccccccceeeEEEEECC
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFE-------------------------------AAHSWKMKVSIKRTIKECEG 71 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-------------------------------~~~~~t~~~~~~~~~~~~~~ 71 (208)
...+||+++|..++|| ++.+++..... .+..+.+.++.....+ +.
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--~~ 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE--EC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE--ec
Confidence 4578999999999999 34555433111 1111222223333333 33
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh---hHHHHHHHHHH--HHhhcCCCCEEEEEeCCCCCCCCC
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD---SFEAAHSWKMK--VENECGEIPTVLVQNKIDLLDQSV 146 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~--~~~~~~~~piivvgnK~Dl~~~~~ 146 (208)
....+.||||||+++|......+++.+|++|+|+|+++.. +|.....+... +....+..|+++|+||+|+.+.+.
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 4467899999999999988888999999999999999742 11111111111 112222345999999999865322
Q ss_pred CC----HHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q psy2518 147 VA----PEEADLLSRALG-----CRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 147 v~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f 178 (208)
.. .++...+....+ ++++++||++|.|+.++.
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 22 223333444444 589999999999998773
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.56 E-value=1.4e-15 Score=138.41 Aligned_cols=158 Identities=11% Similarity=0.093 Sum_probs=103.7
Q ss_pred ceeeeEEEecCceEEE--EEEeeecC-------cccc-------ccccccccceeeEEEEECCeEEEEEEEeCCChhhhc
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRD-------SFEA-------AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD 88 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~-------~f~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~ 88 (208)
...++|+++|..++|| ++.++... .|.. ....+.|+.+....+.++.....+.||||||++.|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 4579999999999999 33444332 1110 112334443333444555556779999999999998
Q ss_pred chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCC---CCHHHHHHHHHHhC----
Q psy2518 89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSV---VAPEEADLLSRALG---- 160 (208)
Q Consensus 89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~---v~~~~~~~~~~~~~---- 160 (208)
......++.+|++|+|+|.++....+ ..+|+..+... +.| +++++||+|+.+... ...++..++++..+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~ 450 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGD 450 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccc
Confidence 88888999999999999999864433 33444444332 577 789999999964211 11245566777665
Q ss_pred -CeEEEEecCCC--------CCHHHHHHHHHHHH
Q psy2518 161 -CRLMRTSVKED--------INVNSIFRYLTTKC 185 (208)
Q Consensus 161 -~~~~e~Sa~~~--------~~i~~~f~~i~~~~ 185 (208)
++++++||++| .|+.++|+.+.+.+
T Consensus 451 ~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 451 DTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 58999999999 45777877776644
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.55 E-value=1.5e-15 Score=128.18 Aligned_cols=148 Identities=10% Similarity=0.058 Sum_probs=97.8
Q ss_pred ceeeeEEEecCceEEE--EEEeeecC--cccc-------------------------------ccccccccceeeEEEEE
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRD--SFEA-------------------------------AHSWKMKVSIKRTIKEC 69 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~--~f~~-------------------------------~~~~t~~~~~~~~~~~~ 69 (208)
...++|+++|..++|| ++.+++.+ .+.+ +...|+ +.... .+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi--~~~~~--~~ 80 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITI--DIALW--KF 80 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCC--SCSCE--EE
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEE--EEEEE--EE
Confidence 4578999999999999 34555432 2211 011233 22223 33
Q ss_pred CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCC-EEEEEeCCCCC
Q psy2518 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD---SFE---AAHSWKMKVENECGEIP-TVLVQNKIDLL 142 (208)
Q Consensus 70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~p-iivvgnK~Dl~ 142 (208)
+.....+.||||||++.|......+++.+|++++|+|.++.. +|+ ....++..... ...| +++++||+|+.
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGG
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccc
Confidence 444567999999999999988888999999999999999763 332 22222222222 1455 89999999996
Q ss_pred CCCC----CCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q psy2518 143 DQSV----VAPEEADLLSRALG-----CRLMRTSVKEDINVNSIF 178 (208)
Q Consensus 143 ~~~~----v~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f 178 (208)
+... ...++...+++.++ ++++++||++|.|+.++.
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 3111 12234555666665 589999999999997653
No 179
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.2e-15 Score=126.97 Aligned_cols=158 Identities=8% Similarity=0.072 Sum_probs=82.0
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccc-cc-------cccccccceeeEEEEECCeEEEEEEEeCCChhhhc------
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AA-------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD------ 88 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------ 88 (208)
.-.++|+++|++|+|| +++++.+..+. .. ..+|++.+.....+..++....+.+|||+|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 3457889999999999 34555554442 11 12344333333333334555689999999976531
Q ss_pred -c------------------hhHhhhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCCCC
Q psy2518 89 -A------------------ITKAYYRGAQACVITFSTIDR-DSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQSVV 147 (208)
Q Consensus 89 -~------------------~~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~~v 147 (208)
. +.+.++.++++.+++|..+.. .+++... .|+..+.. ..|+|+|+||+|+...+.+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~---~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT---TSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc---cCcEEEEEEcccCccHHHH
Confidence 1 112345566665666665543 3555553 57666643 6899999999998655544
Q ss_pred CH--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 148 AP--EEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 148 ~~--~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
.. +.+.+.+..++++++++||+++.++.++|..+...+
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 44 667778888899999999999999999888877654
No 180
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.49 E-value=6.1e-17 Score=124.10 Aligned_cols=153 Identities=12% Similarity=0.148 Sum_probs=96.8
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCcccccccccccccee------------eEEEEEC-CeEEEEEEEeCCChhhhcc
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIK------------RTIKECE-GEEVRLMLWDTAGQEEFDA 89 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~------------~~~~~~~-~~~~~l~i~Dt~g~~~~~~ 89 (208)
...+||+++|..|+|| ++.++....|...+.++++.++. .+.+.++ +..+.+..||+ ++.+..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~ 113 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLV--GHALED 113 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHH--HHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHH--HHHHHH
Confidence 3578999999999999 45677777777667788877765 3455554 44444555665 444443
Q ss_pred hh----Hhhhc--------------CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH
Q psy2518 90 IT----KAYYR--------------GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE 151 (208)
Q Consensus 90 ~~----~~~~~--------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~ 151 (208)
+. ..++. ..+..+.+.|......... .. ... . ..|.++|+||+|+.+.+.+..++
T Consensus 114 l~~~~~d~~~id~~g~i~~~~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~--~--~~~~iiv~NK~Dl~~~~~~~~~~ 186 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIE--KH-PGI--M--KTADLIVINKIDLADAVGADIKK 186 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGGGGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH--H--TTCSEEEEECGGGHHHHTCCHHH
T ss_pred HhcCCCCEEEEeCCCCccCcchhhhccCcEEEEEecCcchhhHh--hh-hhH--h--hcCCEEEEeccccCchhHHHHHH
Confidence 32 11111 1223344455321111000 00 001 0 36779999999996544466777
Q ss_pred HHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 152 ADLLSRAL--GCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 152 ~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
+.++++.. +++++++||++|.|++++|+.+.+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 187 MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 77777765 569999999999999999999988764
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.49 E-value=5.4e-14 Score=110.39 Aligned_cols=121 Identities=10% Similarity=0.016 Sum_probs=83.2
Q ss_pred eeeeEEEecCceEEE--EEEeeecCcc--ccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc-----
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSF--EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR----- 96 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~----- 96 (208)
..++|+++|.+++|| +++++.+..+ ...+.++. .+.....+..++. .+.+|||||++.+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG-LRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-C-CCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc-eeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence 579999999999999 4566666664 22333322 2334444455554 6899999999877665555443
Q ss_pred ----CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHH
Q psy2518 97 ----GAQACVITFSTIDRDSFEAA-HSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPE 150 (208)
Q Consensus 97 ----~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~ 150 (208)
.+|++++|++++... +... ..|+..+....+ ..|+++|+||+|+...+....+
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE 172 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence 889999999998754 4333 467777776554 2499999999999654444443
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.48 E-value=4.1e-14 Score=124.85 Aligned_cols=113 Identities=13% Similarity=0.170 Sum_probs=78.9
Q ss_pred cceeeeEEEecCceEEE--EEEeeecC--cc------cc------------ccccccccceeeEEEEECCeEEEEEEEeC
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRD--SF------EA------------AHSWKMKVSIKRTIKECEGEEVRLMLWDT 81 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~--~f------~~------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt 81 (208)
....++|.++|..++|| ++.++... .+ .+ .+.+|++.. ...+.+. .+.+++|||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~~--~~~i~liDT 84 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWK--DHRINIIDT 84 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEET--TEEEEEECC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEEC--CeEEEEEEC
Confidence 46789999999999999 33444321 11 00 233444322 2223333 467999999
Q ss_pred CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518 82 AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 82 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~ 143 (208)
+|+..|......+++.+|++++|+|.++..+++....|.... +. +.|+++++||+|+..
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~-~~--~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE-KY--KVPRIAFANKMDKTG 143 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-HT--TCCEEEEEECTTSTT
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH-Hc--CCCEEEEEECCCccc
Confidence 999999988999999999999999999988888776665432 22 789999999999854
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.47 E-value=1e-13 Score=115.34 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=104.2
Q ss_pred eeEEEecCceEEE-EE-EeeecCcc-ccccc-cccccceeeEEEEECCeEEEEEEEeCCChhh----hcchhHhh---hc
Q psy2518 28 TKAYYRGAQACVI-TF-STIDRDSF-EAAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----FDAITKAY---YR 96 (208)
Q Consensus 28 ~ki~~vG~s~~gk-~~-~~~~~~~f-~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~~~~---~~ 96 (208)
-.+.++|.+++|| ++ +++..... ...+. .|+ ......+.+++ ...+.+||++|... +..+...+ ..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl--~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTL--SPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSS--CCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCccccee--cceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 4578999999999 33 33333321 11121 111 11122334443 24578999999732 22233333 45
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN 173 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 173 (208)
.++.++.++|++ ..++..+..|..++..... ..|.++++||+|+... ...++..+.+...++.++++||+++.|
T Consensus 235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAG 311 (416)
T ss_dssp SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccC
Confidence 799999999998 6678888888877776543 6899999999998543 222334444555678999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy2518 174 VNSIFRYLTTKCLSEL 189 (208)
Q Consensus 174 i~~~f~~i~~~~~~~~ 189 (208)
++++++.+.+.+....
T Consensus 312 i~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 312 LPALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999886543
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.46 E-value=6.5e-14 Score=120.01 Aligned_cols=117 Identities=12% Similarity=0.065 Sum_probs=75.2
Q ss_pred cceeeeEEEecCceEEE--EEEeeecC--cc----------------cc--ccccccccceeeEEEEECCeEEEEEEEeC
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRD--SF----------------EA--AHSWKMKVSIKRTIKECEGEEVRLMLWDT 81 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~--~f----------------~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt 81 (208)
....++|+++|..++|| ++.++... .+ .+ ...++.|+.+......++...+.++||||
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 35689999999999999 23433321 11 00 01123333333334444444577999999
Q ss_pred CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518 82 AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 82 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~ 143 (208)
||++.|......+++.+|++++|+|.++...... ..++..+.. .+.|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCcc
Confidence 9999998888889999999999999998644322 222222222 1789999999999854
No 185
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.46 E-value=7.1e-16 Score=133.84 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=74.3
Q ss_pred cceeeeEEEecCceEEE--EEEeee-------------------------------cCccccccccccccceeeEEEEEC
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTID-------------------------------RDSFEAAHSWKMKVSIKRTIKECE 70 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~-------------------------------~~~f~~~~~~t~~~~~~~~~~~~~ 70 (208)
-...++|+++|..++|| ++.+++ .+.+.++..+.+.++.....+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 45678999999999999 334332 12223333444444444444443
Q ss_pred CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCC-EEEEEeCC
Q psy2518 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR----------DSFEAAHSWKMKVENECGEIP-TVLVQNKI 139 (208)
Q Consensus 71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~p-iivvgnK~ 139 (208)
....+.||||||++.|.......++.+|++|+|+|.++. ++.+.+ ..+. .. ..| +|+|+||+
T Consensus 253 -~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~-~l-gip~iIvviNKi 325 (592)
T 3mca_A 253 -DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLR-AL-GISEIVVSVNKL 325 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHH-HS-SCCCEEEEEECG
T ss_pred -CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHH-Hc-CCCeEEEEEecc
Confidence 346789999999999998888889999999999999863 222222 1121 22 454 99999999
Q ss_pred CCCCCCCC----CHHHHHHHH-HHhCC-----eEEEEecCCCCCHH
Q psy2518 140 DLLDQSVV----APEEADLLS-RALGC-----RLMRTSVKEDINVN 175 (208)
Q Consensus 140 Dl~~~~~v----~~~~~~~~~-~~~~~-----~~~e~Sa~~~~~i~ 175 (208)
|+.+.... ..++...+. +..++ +++++||++|.|+.
T Consensus 326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 98542111 112233333 33454 69999999999998
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.46 E-value=2.9e-15 Score=122.83 Aligned_cols=107 Identities=19% Similarity=0.174 Sum_probs=78.5
Q ss_pred EEEEEEeCCChhhh-------------cchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCC
Q psy2518 74 VRLMLWDTAGQEEF-------------DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKI 139 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~ 139 (208)
..+.+|||||..++ ..+...+++.+|++++|+|..+.+... ..|+..+....+ ..|+++|+||+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKI 213 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCC
Confidence 35899999998765 556778899999999999876544332 234444444433 67999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518 140 DLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182 (208)
Q Consensus 140 Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 182 (208)
|+.++.....+....++..++.+|+++|++++.++++.+....
T Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 9976666665555555555678999999999998887766543
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.45 E-value=4.8e-13 Score=118.29 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=79.4
Q ss_pred cceeeeEEEecCceEEE--EEEeeec--Ccccc------------------ccccccccceeeEEEEE-----CCeEEEE
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDR--DSFEA------------------AHSWKMKVSIKRTIKEC-----EGEEVRL 76 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~--~~f~~------------------~~~~t~~~~~~~~~~~~-----~~~~~~l 76 (208)
..+.++|+++|..++|| ++.++.. +.+.. +...|+.... ..+.+ ++..+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA--TTAFWSGMAKQYEPHRI 84 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece--EEEEECCccccCCceeE
Confidence 45689999999999999 2333321 11111 1222332221 22332 2345889
Q ss_pred EEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518 77 MLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 77 ~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~ 143 (208)
+||||||+..|......+++.+|++|+|+|.++..+.+....|.. ... .+.|+++++||+|+..
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCccc
Confidence 999999999998889999999999999999998877665555533 222 2689999999999853
No 188
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.44 E-value=5.4e-14 Score=124.18 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=80.1
Q ss_pred EEEEEeCCChhhh---cchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHH-
Q psy2518 75 RLMLWDTAGQEEF---DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPE- 150 (208)
Q Consensus 75 ~l~i~Dt~g~~~~---~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~- 150 (208)
.+.||||||.... ......+++.+|++++|+|.+++.+......|...+... ..|+++|+||+|+.....++.+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh--CCCEEEEEECcccccccccChhh
Confidence 5899999997653 345567889999999999999988887776665444322 5789999999998654322221
Q ss_pred --H-------HHH-----HHHHh--------CCeEEEEecC--------------CCCCHHHHHHHHHHHHHHH
Q psy2518 151 --E-------ADL-----LSRAL--------GCRLMRTSVK--------------EDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 151 --~-------~~~-----~~~~~--------~~~~~e~Sa~--------------~~~~i~~~f~~i~~~~~~~ 188 (208)
+ ... +.... +.++++|||+ ++.|+++++..+.+.+...
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHh
Confidence 1 111 11111 1368999999 9999999999998876543
No 189
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.41 E-value=1e-13 Score=109.30 Aligned_cols=122 Identities=9% Similarity=-0.010 Sum_probs=80.0
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhH-------hh--
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITK-------AY-- 94 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~-------~~-- 94 (208)
..++|+++|.+|+|| +++++.+..+... .++.+.........++...+.+.+|||||.+.+..... .+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 479999999999999 4566666665321 12222223333344444456799999999876643322 12
Q ss_pred hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcC-C--CCEEEEEeCCCCCCCCCCCH
Q psy2518 95 YRGAQACVITFSTIDRDSFEAA-HSWKMKVENECG-E--IPTVLVQNKIDLLDQSVVAP 149 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~--~piivvgnK~Dl~~~~~v~~ 149 (208)
.+.+|++++|+|++.. ++... ..|+..+.+..+ + .|+++|+||+|+...+....
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~ 174 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY 174 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence 3479999999999763 34433 467777766544 2 69999999999965444333
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.36 E-value=2.7e-12 Score=113.31 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=79.1
Q ss_pred cceeeeEEEecCceEEE--EEEeeec--Ccccc------------------ccccccccceeeEEEEECCeEEEEEEEeC
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDR--DSFEA------------------AHSWKMKVSIKRTIKECEGEEVRLMLWDT 81 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~--~~f~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt 81 (208)
.....+|+++|..++|| +++++.. +.+.. ....|+. .....+.++ .+.+++|||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~--~~~~~~~~~--~~~i~liDT 82 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITIT--SAATTAAWE--GHRVNIIDT 82 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------C--CSEEEEEET--TEEEEEECC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEe--eeeEEEEEC--CeeEEEEEC
Confidence 35689999999999999 3444442 22210 1122332 122333344 367999999
Q ss_pred CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518 82 AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 82 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~ 143 (208)
+|+..|......+++.+|++++|+|.++..+++....|.. +.+. +.|+++|+||+|+..
T Consensus 83 PG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~--~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY--GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT--TCCEEEEEECTTSTT
T ss_pred cCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc--CCCEEEEEECCCccc
Confidence 9999998888999999999999999999888877666643 3332 689999999999854
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.35 E-value=5.2e-14 Score=115.11 Aligned_cols=163 Identities=15% Similarity=0.084 Sum_probs=95.7
Q ss_pred cCccccceeeeEEEecCceEEE--EEEeeecCcccccc------cccc--------------------------------
Q psy2518 19 AGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAH------SWKM-------------------------------- 58 (208)
Q Consensus 19 ~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~------~~t~-------------------------------- 58 (208)
.|........+|+++|..++|| +++++.+..|.+.. .|+.
T Consensus 23 ~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~ 102 (353)
T 2x2e_A 23 IGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIE 102 (353)
T ss_dssp TTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHH
T ss_pred cCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHH
Confidence 4555556778999999999999 46777777774221 1220
Q ss_pred -----------ccceeeEEEEEC-CeEEEEEEEeCCChh-------------hhcchhHhhhcCCcEEEE-EEeCCChhh
Q psy2518 59 -----------KVSIKRTIKECE-GEEVRLMLWDTAGQE-------------EFDAITKAYYRGAQACVI-TFSTIDRDS 112 (208)
Q Consensus 59 -----------~~~~~~~~~~~~-~~~~~l~i~Dt~g~~-------------~~~~~~~~~~~~~d~ii~-v~d~~~~~s 112 (208)
|+......+.+. .....+.||||||.. .+..+...|++.++.+++ |.|.+....
T Consensus 103 ~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~ 182 (353)
T 2x2e_A 103 AETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA 182 (353)
T ss_dssp HHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG
T ss_pred HHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc
Confidence 000011111121 113569999999952 455667778877665555 455543222
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH--HHHHhCC-eEEEEecCCCCCHHHHHHHHHH
Q psy2518 113 FEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL--LSRALGC-RLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~--~~~~~~~-~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
-.....++..+.. ...|+++|+||+|+.++.....+..+. +....++ +++++||+++.|++++|+.+.+
T Consensus 183 ~~~~~~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 183 NSDALKVAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GCHHHHHHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred hhHHHHHHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 1122223333322 168999999999996543322222111 0011233 5688999999999999998876
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.34 E-value=1.7e-13 Score=104.40 Aligned_cols=103 Identities=14% Similarity=0.159 Sum_probs=71.6
Q ss_pred EEEEEEeCCChhhhcchhHhh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHH
Q psy2518 74 VRLMLWDTAGQEEFDAITKAY-YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA 152 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~-~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~ 152 (208)
+.+.+|||+|+-. .+.+ ...++.+++|+|.++.... ...+... . +.|+++|+||+|+.+.+....++.
T Consensus 109 ~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~--~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F--RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H--HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcchh--hhhhhhh---h--hcCCEEEEecccCCcchhhHHHHH
Confidence 5678999999511 1111 1367899999998875431 1111111 1 478999999999855334566677
Q ss_pred HHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518 153 DLLSRAL--GCRLMRTSVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 153 ~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
.+.++.. +.+++++||++|.|++++|+.+.+.+..
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 7666665 3689999999999999999999887654
No 193
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.34 E-value=5.6e-13 Score=107.01 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=69.5
Q ss_pred EEEEEEeCCChhh-------------hcchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy2518 74 VRLMLWDTAGQEE-------------FDAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKI 139 (208)
Q Consensus 74 ~~l~i~Dt~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~ 139 (208)
..+.+|||||... +......+++.+|++++|+|.++.. .-.....+...+.. .+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 4689999999643 4556777899999999999974432 11111122222222 268999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCeEEEEecC---C---CCCHHHHHHHHHHHHHH
Q psy2518 140 DLLDQSVVAPEEADLLSRALGCRLMRTSVK---E---DINVNSIFRYLTTKCLS 187 (208)
Q Consensus 140 Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~---~---~~~i~~~f~~i~~~~~~ 187 (208)
|+.+......+.........+..++++|+. + +.|+.++++.+.+.+..
T Consensus 209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 996544322332221111122566666655 4 68899999887776643
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.28 E-value=2e-12 Score=116.32 Aligned_cols=126 Identities=16% Similarity=0.200 Sum_probs=87.5
Q ss_pred ccceeeeEEEecCceEEE--EEEeeecC------------cccc----c--cccccccceeeEEEE------------EC
Q psy2518 23 EFDAITKAYYRGAQACVI--TFSTIDRD------------SFEA----A--HSWKMKVSIKRTIKE------------CE 70 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~------------~f~~----~--~~~t~~~~~~~~~~~------------~~ 70 (208)
.....+||+++|..++|| ++.+++.. .+.+ + ...|++.......+. .+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 345688999999999999 23433332 2211 1 123444333333333 24
Q ss_pred CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-CCCCCH
Q psy2518 71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD-QSVVAP 149 (208)
Q Consensus 71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~-~~~v~~ 149 (208)
+..+.++||||||+.+|...+..+++.+|++++|+|.++..+++....|..... .+.|+++++||+|+.. +...+.
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~~~~e~~~~~ 171 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRALLELQVSK 171 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHHHHTSCCCH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCcchhhhccCH
Confidence 568899999999999999999999999999999999999988888766654432 2689999999999852 233444
Q ss_pred HH
Q psy2518 150 EE 151 (208)
Q Consensus 150 ~~ 151 (208)
++
T Consensus 172 ~e 173 (842)
T 1n0u_A 172 ED 173 (842)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 195
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.27 E-value=8e-13 Score=109.54 Aligned_cols=83 Identities=17% Similarity=0.057 Sum_probs=44.2
Q ss_pred eeEEEecCceEEE--EEEeeecCccc-ccc-----ccccccceeeEE---------------EEECC-eEEEEEEEeCCC
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFE-AAH-----SWKMKVSIKRTI---------------KECEG-EEVRLMLWDTAG 83 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~-~~~-----~~t~~~~~~~~~---------------~~~~~-~~~~l~i~Dt~g 83 (208)
+||.++|..++|| +++++...... ..+ .++.|..+.... ..+++ ..+.+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999 45666555422 122 223332111100 11233 257899999999
Q ss_pred hhh----hcchhH---hhhcCCcEEEEEEeCCCh
Q psy2518 84 QEE----FDAITK---AYYRGAQACVITFSTIDR 110 (208)
Q Consensus 84 ~~~----~~~~~~---~~~~~~d~ii~v~d~~~~ 110 (208)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 854 233333 346899999999999875
No 196
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.26 E-value=6.8e-12 Score=94.13 Aligned_cols=103 Identities=3% Similarity=-0.122 Sum_probs=68.0
Q ss_pred CCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHH---HHhh-c--CCCCEEEEEeCC-CCCCCCCCCHHHHH
Q psy2518 81 TAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK---VENE-C--GEIPTVLVQNKI-DLLDQSVVAPEEAD 153 (208)
Q Consensus 81 t~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~---~~~~-~--~~~piivvgnK~-Dl~~~~~v~~~~~~ 153 (208)
.+||+.++++|+.||.++|++|+|+|.+|++-++ ...-+.+ +... . .+.|++|++||. |+. ...+..+..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHH
Confidence 3589999999999999999999999999986543 3222222 2222 1 368999999995 773 345555544
Q ss_pred HHHHH----hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 154 LLSRA----LGCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 154 ~~~~~----~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
+.... ..+.++.|||++|+|+.+.++++.+.+.
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 33211 2346899999999999999999987653
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.18 E-value=3e-11 Score=98.61 Aligned_cols=141 Identities=12% Similarity=0.067 Sum_probs=88.1
Q ss_pred eeEEEecCceEEE--EEEeeecCcccc-ccc-cccccceeeEEEEECCe---------------EEEEEEEeCCChhhhc
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEA-AHS-WKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQEEFD 88 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~-~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~~ 88 (208)
++|.++|..++|| +++++....+.. .++ +|++... ..+.+++. +..+++|||||+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 6899999999999 466666655432 222 2444332 23444442 2579999999987653
Q ss_pred ----chhH---hhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHH----------------------------
Q psy2518 89 ----AITK---AYYRGAQACVITFSTIDR----------DSFEAAHSWKMKV---------------------------- 123 (208)
Q Consensus 89 ----~~~~---~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~---------------------------- 123 (208)
.+.. .+++.+|++++|+|+++. +.++++..|..++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~ 160 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF 160 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence 2332 357899999999999862 2333322211111
Q ss_pred ------------H-------------------hhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q psy2518 124 ------------E-------------------NECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170 (208)
Q Consensus 124 ------------~-------------------~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 170 (208)
. .... ..|+++++||.|..-......+...+++...+.+++.+||+.
T Consensus 161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 0 0001 489999999999642222335667778888899999999874
No 198
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.17 E-value=1.1e-10 Score=95.94 Aligned_cols=96 Identities=18% Similarity=0.244 Sum_probs=76.3
Q ss_pred ChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH----HHH
Q psy2518 83 GQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL----SRA 158 (208)
Q Consensus 83 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~----~~~ 158 (208)
..+.|.++.+.+++.++++++|+|++++. ..|...+.+...+.|+++|+||+|+.+. ....+...++ ++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~ 128 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQ 128 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999863 4566667666668999999999999653 3444444444 566
Q ss_pred hCC---eEEEEecCCCCCHHHHHHHHHHH
Q psy2518 159 LGC---RLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 159 ~~~---~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
.|+ +++++||++|.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 129 LGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp TTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 677 79999999999999999988653
No 199
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.14 E-value=1e-10 Score=91.87 Aligned_cols=103 Identities=3% Similarity=-0.130 Sum_probs=72.6
Q ss_pred CCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHH---HHH-hh--cCCCCEEEEEeC-CCCCCCCCCCHHHHH
Q psy2518 81 TAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM---KVE-NE--CGEIPTVLVQNK-IDLLDQSVVAPEEAD 153 (208)
Q Consensus 81 t~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~-~~--~~~~piivvgnK-~Dl~~~~~v~~~~~~ 153 (208)
.+||+..+.+|+.||.++|++|+|+|.+|++.++ ...-+. .+. .. ..+.|++|++|| .|+.. .++..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 4789999999999999999999999999987543 222111 222 21 137999999996 58743 45555444
Q ss_pred HHHHH----hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 154 LLSRA----LGCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 154 ~~~~~----~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
+.... ..+.++.|||++|+|+.+.++++.+.+.
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 32211 2346899999999999999999998763
No 200
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.08 E-value=8.1e-12 Score=102.17 Aligned_cols=104 Identities=17% Similarity=0.129 Sum_probs=70.2
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHH
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA 152 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~ 152 (208)
.+.+.||||+|... .....+..+|++++|+|.+..+.+..+..+ + .+.|.++|.||+|+...... ....
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~----~~~p~ivVlNK~Dl~~~~~~-~~~~ 239 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V----LELADIVVVNKADGEHHKEA-RLAA 239 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S----GGGCSEEEEECCCGGGHHHH-HHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H----hhcCCEEEEECCCCcChhHH-HHHH
Confidence 35689999999422 233445899999999998876554333211 1 14689999999998532111 1111
Q ss_pred HHHHHH---h-------CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518 153 DLLSRA---L-------GCRLMRTSVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 153 ~~~~~~---~-------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
.++... . +.+++++||++|.|++++++.+.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 222222 1 4689999999999999999999887754
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.05 E-value=1.3e-10 Score=95.14 Aligned_cols=53 Identities=13% Similarity=0.074 Sum_probs=39.9
Q ss_pred CCCEEEEEeCCCCC--CC-CCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518 129 EIPTVLVQNKIDLL--DQ-SVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181 (208)
Q Consensus 129 ~~piivvgnK~Dl~--~~-~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 181 (208)
..|+++++||.|.. +. +....+...++++..+.+++++||+...++.+++..-
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~ 256 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEE 256 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHH
Confidence 37999999999842 21 1234567778888889999999999987777766553
No 202
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.02 E-value=5.5e-10 Score=91.74 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=74.3
Q ss_pred CCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH----H
Q psy2518 81 TAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL----S 156 (208)
Q Consensus 81 t~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~----~ 156 (208)
...++.|.+..+.++..++++++|+|++++.+ .|...+.+...+.|+++|+||+|+... ....+...++ +
T Consensus 55 ~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 55 PLDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPR-SVKYPKLLRWMRRMA 128 (369)
T ss_dssp ----CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHH
Confidence 34588999999999999999999999999774 355555555567899999999999653 3344444444 4
Q ss_pred HHhCC---eEEEEecCCCCCHHHHHHHHHHH
Q psy2518 157 RALGC---RLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 157 ~~~~~---~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
+..|+ .++.+||++|.|++++++.+.+.
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 55676 68999999999999999988654
No 203
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.98 E-value=1e-10 Score=100.79 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=78.1
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccc---cccccccccceeeEEEEEC-------------------------C--
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFE---AAHSWKMKVSIKRTIKECE-------------------------G-- 71 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~---~~~~~t~~~~~~~~~~~~~-------------------------~-- 71 (208)
.....+|+++|..++|| +++++++..+. ....|+.. .. ..+..+ +
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~-~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CF-VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SE-EEEECCSSSEEECCC------------------C
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eE-EEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 45678999999999999 46777777663 12222221 00 000000 0
Q ss_pred ----eE---------EEEEEEeCCChhh-----------hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc
Q psy2518 72 ----EE---------VRLMLWDTAGQEE-----------FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127 (208)
Q Consensus 72 ----~~---------~~l~i~Dt~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 127 (208)
-. ..+.+|||+|... |......+++.+|++++|+|.++.........|+..+.+.
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~- 217 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH- 217 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-
Confidence 00 2589999999864 4566677889999999999998865555666677666543
Q ss_pred CCCCEEEEEeCCCCCC
Q psy2518 128 GEIPTVLVQNKIDLLD 143 (208)
Q Consensus 128 ~~~piivvgnK~Dl~~ 143 (208)
..|+++|+||+|+..
T Consensus 218 -~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 218 -EDKIRVVLNKADMVE 232 (550)
T ss_dssp -GGGEEEEEECGGGSC
T ss_pred -CCCEEEEEECCCccC
Confidence 578999999999854
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.95 E-value=2.4e-09 Score=83.40 Aligned_cols=109 Identities=16% Similarity=0.060 Sum_probs=68.1
Q ss_pred EEEEEEeCCChhhhcchhH------hhhcCCcEEEEEEeCCChhh---HHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC
Q psy2518 74 VRLMLWDTAGQEEFDAITK------AYYRGAQACVITFSTIDRDS---FEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ 144 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~ 144 (208)
+.+.||||+|+..+..... ..+.. ++++++.|.....+ +.....+..... ...+.|+++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccccc
Confidence 5789999999876543322 24456 88888888754333 222211111111 1126899999999998543
Q ss_pred CCCCHHHHHHH----------------------------HHHhC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 145 SVVAPEEADLL----------------------------SRALG--CRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 145 ~~v~~~~~~~~----------------------------~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
..+ ++..++ +..++ .+++++||+++.|++++++.+.+.+.
T Consensus 187 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 187 EEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 211 111111 23333 48999999999999999999887764
No 205
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.84 E-value=2.2e-08 Score=86.20 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=76.9
Q ss_pred ccceeeeEEEecCceEEEE-E-Eeee--c--------------------CccccccccccccceeeEEEEECCeEEEEEE
Q psy2518 23 EFDAITKAYYRGAQACVIT-F-STID--R--------------------DSFEAAHSWKMKVSIKRTIKECEGEEVRLML 78 (208)
Q Consensus 23 ~~~~~~ki~~vG~s~~gk~-~-~~~~--~--------------------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i 78 (208)
+-.+..+|.++|-...||+ + -+++ . +....+....+ .+....+.+..+.++++|
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGI--TI~s~~~~~~~~~~~iNl 104 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGI--SVTTSVMQFPYRDRVVNL 104 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC----------------------CTTTEEEEEETTEEEEE
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCC--cEeeceEEEEECCEEEEE
Confidence 3457889999999999992 1 1111 1 11111222222 223333334334467999
Q ss_pred EeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 79 WDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 79 ~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
.||||+..|.......++-+|++++|+|....-.-+...-|...... +.|.+++.||.|..
T Consensus 105 IDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 105 LDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR---ATPVMTFVNKMDRE 165 (548)
T ss_dssp ECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTTSC
T ss_pred EeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh---CCceEEEEecccch
Confidence 99999999999999999999999999999987666665666443333 79999999999974
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.75 E-value=2.4e-09 Score=94.79 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=68.5
Q ss_pred EEEEEeCCChhh-------------hcchhHhhh-cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518 75 RLMLWDTAGQEE-------------FDAITKAYY-RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKID 140 (208)
Q Consensus 75 ~l~i~Dt~g~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~D 140 (208)
.+.++||||... ...+...++ ..+|++++|.|.++...-.....++..+... ..|+++|.||+|
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~--g~pvIlVlNKiD 228 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLD 228 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTT--CSSEEEEEECTT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhc--CCCEEEEEeCcc
Confidence 478999999432 233444455 5889999999998754332222233333322 689999999999
Q ss_pred CCCCCCCCHHHHHHHHHH----hCC-eEEEEecCCCCCHHHHHHHHHHH
Q psy2518 141 LLDQSVVAPEEADLLSRA----LGC-RLMRTSVKEDINVNSIFRYLTTK 184 (208)
Q Consensus 141 l~~~~~v~~~~~~~~~~~----~~~-~~~e~Sa~~~~~i~~~f~~i~~~ 184 (208)
+.++......... .+. .+. +++.+||++|.|++++++.+.+.
T Consensus 229 lv~~~~~~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 229 LMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp SSCTTCCSHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred cCCcchhhHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 8654433322111 111 132 56789999999999999988764
No 207
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.72 E-value=4.1e-08 Score=77.63 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=69.5
Q ss_pred EEeCCChh-hhcchhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH
Q psy2518 78 LWDTAGQE-EFDAITKAYYRGAQACVITFSTIDRDSFE--AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL 154 (208)
Q Consensus 78 i~Dt~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~ 154 (208)
|-..||+. .........++.+|+++.|+|+.++.+.. .+.+|+ .+.|.++|.||+||.+ .+..+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~-----~~~~~~ 70 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKAD-----AAVTQQ 70 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSC-----HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCC-----HHHHHH
Confidence 44567764 44555667889999999999999988764 344443 4789999999999954 233333
Q ss_pred H---HHHhCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518 155 L---SRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187 (208)
Q Consensus 155 ~---~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 187 (208)
+ .+..+++++.+||+++.|++++++.+.+.+..
T Consensus 71 ~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 71 WKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 3 33457899999999999999999988776653
No 208
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.58 E-value=9.4e-08 Score=77.57 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=64.1
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH--HH
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP--EE 151 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~--~~ 151 (208)
+.+.||||+|...... ...+.+|++++|+|.+..+.++.+.. ... +.|.++|.||+|+........ ++
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~ 218 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLM----EVADLIVINKDDGDNHTNVAIARHM 218 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHH----HHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hhh----cccCEEEEECCCCCChHHHHHHHHH
Confidence 5689999999654332 24689999999999976544322111 111 357899999999854211110 01
Q ss_pred HHHHHHHh-------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 152 ADLLSRAL-------GCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 152 ~~~~~~~~-------~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
........ ..+++++||++|.|++++++.+.+.+.
T Consensus 219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 219 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11111121 347899999999999999999988764
No 209
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.47 E-value=8e-08 Score=84.18 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=59.0
Q ss_pred eeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518 62 IKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL 141 (208)
Q Consensus 62 ~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl 141 (208)
+....+.+..+.++++|.||||+..|.......++-+|++++|+|....-.-+...-|...... +.|.+++.||.|.
T Consensus 55 I~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~lp~i~~INKmDr 131 (638)
T 3j25_A 55 IQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM---GIPTIFFINKIDQ 131 (638)
T ss_dssp SSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH---TCSCEECCEECCS
T ss_pred EEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc---CCCeEEEEecccc
Confidence 3344444555557799999999999999899999999999999999876554444444433333 6899999999997
Q ss_pred C
Q psy2518 142 L 142 (208)
Q Consensus 142 ~ 142 (208)
.
T Consensus 132 ~ 132 (638)
T 3j25_A 132 N 132 (638)
T ss_dssp S
T ss_pred c
Confidence 4
No 210
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.45 E-value=1.1e-06 Score=71.44 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=61.8
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHH
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~ 153 (208)
+.+.++||+|... ........+|++++|+|.+++...+.+.. .+ ...|.++|.||+|+.+.... .....
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~-~~~~~ 235 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPA-RRIQA 235 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHH-HHHHH
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhH-HHHHH
Confidence 4578999999531 12345679999999999987643322211 11 14678999999998431100 01112
Q ss_pred HHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 154 LLSRA----------LGCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 154 ~~~~~----------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
.+... .+.+++.+||++|.|++++++.+.+.+.
T Consensus 236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 22211 1347899999999999999999987653
No 211
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.39 E-value=3.1e-06 Score=75.04 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=56.6
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~ 142 (208)
+.+.+++.||||+-.|.......++-+|++++|+|....-.-+...-|...... +.|.+++.||.|..
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSST
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEcccccc
Confidence 468999999999999999899999999999999999887665555555444444 79999999999963
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.39 E-value=4.4e-08 Score=80.70 Aligned_cols=90 Identities=12% Similarity=0.009 Sum_probs=48.9
Q ss_pred cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCe---------------EEEEEEEeCCChhh
Q psy2518 24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQEE 86 (208)
Q Consensus 24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~ 86 (208)
....+++.++|..++|| +++++....+.....|+.+.+.....+.+++. +..+++|||+|...
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 34568999999999999 45666665553333333333444445555442 33599999999876
Q ss_pred hcc-------hhHhhhcCCcEEEEEEeCCChhhH
Q psy2518 87 FDA-------ITKAYYRGAQACVITFSTIDRDSF 113 (208)
Q Consensus 87 ~~~-------~~~~~~~~~d~ii~v~d~~~~~s~ 113 (208)
+.+ ....+++.+|++++|+|+++.+++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC------
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 543 345678999999999999865443
No 213
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.22 E-value=9e-06 Score=66.62 Aligned_cols=131 Identities=11% Similarity=0.061 Sum_probs=80.6
Q ss_pred eeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhh----cchhH---hhh
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF----DAITK---AYY 95 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----~~~~~---~~~ 95 (208)
....|.++|..++|| +|+.+....-. .+| |....+-....+.+++.. +++.||||.... ..+.+ ..+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~-pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEY-EFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGT-CSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCC-CCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 356899999999999 45555443322 233 222234455566777755 789999996321 11222 346
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhh---cCCCCEEEEEeCCCCCC--------CCCCCHHHHHHHHHHhCC
Q psy2518 96 RGAQACVITFSTIDRDSFEAAHSWKMKVENE---CGEIPTVLVQNKIDLLD--------QSVVAPEEADLLSRALGC 161 (208)
Q Consensus 96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~piivvgnK~Dl~~--------~~~v~~~~~~~~~~~~~~ 161 (208)
+.||++++|.|.+++..- ......++... ....|.+++.||.|... ......++...+...+.+
T Consensus 148 ~~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp HHCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred HhcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence 789999999999987432 22222233222 22678888999999632 134566777666666554
No 214
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.11 E-value=1.8e-06 Score=67.48 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=60.0
Q ss_pred chhHhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518 89 AITKAYYRGAQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166 (208)
Q Consensus 89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 166 (208)
......++.+|+++.|+|+.++.+..+ +. |+ +.|.++|.||+||.+... .+...++.+..|+++ .+
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~i 80 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-IT 80 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EE
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EE
Confidence 345667899999999999999877643 22 22 689999999999954210 112233344557888 99
Q ss_pred ecCCCCCHHHHHHHHHH
Q psy2518 167 SVKEDINVNSIFRYLTT 183 (208)
Q Consensus 167 Sa~~~~~i~~~f~~i~~ 183 (208)
||+++.|++++++.+.+
T Consensus 81 Sa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 81 THKGEPRKVLLKKLSFD 97 (262)
T ss_dssp CCTTSCHHHHHHHHCCC
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 99999999999887644
No 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.08 E-value=9.1e-06 Score=65.75 Aligned_cols=103 Identities=16% Similarity=0.088 Sum_probs=62.2
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHH
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~ 153 (208)
+.+.++||+|.... .......+|.+++++|....+..+.+..+. . ..|.+++.||+|+...........+
T Consensus 148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~----~~~~ivvlNK~Dl~~~~~~s~~~~~ 217 (337)
T 2qm8_A 148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKGI---F----ELADMIAVNKADDGDGERRASAAAS 217 (337)
T ss_dssp CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTTH---H----HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHHH---h----ccccEEEEEchhccCchhHHHHHHH
Confidence 46899999996431 123457899999999987543322221111 1 2355667799997432211122223
Q ss_pred HHHHHh----------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 154 LLSRAL----------GCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 154 ~~~~~~----------~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
.+.... +.+++.+||+++.|++++++.+.+...
T Consensus 218 ~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 218 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333221 347899999999999999999887653
No 216
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.05 E-value=1.5e-05 Score=65.76 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=54.3
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCcc-ccccccccccceeeEEEEECCe---------------EEEEEEEeCCChhh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSF-EAAHSWKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQEE 86 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~ 86 (208)
....++.++|..|+|| +++.+.+..+ .....|+...+.....+.+.+. ...+.+||++|...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4467899999999999 4565555444 3323332223333445555542 13589999999643
Q ss_pred -------hcchhHhhhcCCcEEEEEEeCCC
Q psy2518 87 -------FDAITKAYYRGAQACVITFSTID 109 (208)
Q Consensus 87 -------~~~~~~~~~~~~d~ii~v~d~~~ 109 (208)
........++.+|+++.|+|..+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234455789999999999864
No 217
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.02 E-value=1.6e-06 Score=69.17 Aligned_cols=91 Identities=18% Similarity=0.261 Sum_probs=61.1
Q ss_pred cchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHHHHHHHHHhCCeEE
Q psy2518 88 DAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEEADLLSRALGCRLM 164 (208)
Q Consensus 88 ~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~~~~~~~~~~~~~~ 164 (208)
..+.+..++++|.+++|+|+.+|. +...+.+++...... ++|.++|.||+||.+.... ..+...+..+..|.+++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 345556789999999999999765 444445555443322 6889999999999553110 01222233334588999
Q ss_pred EEecCCCCCHHHHHHH
Q psy2518 165 RTSVKEDINVNSIFRY 180 (208)
Q Consensus 165 e~Sa~~~~~i~~~f~~ 180 (208)
.+||+++.|+++++..
T Consensus 155 ~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 155 LTSSKDQDSLADIIPH 170 (307)
T ss_dssp ECCHHHHTTCTTTGGG
T ss_pred EEecCCCCCHHHHHhh
Confidence 9999999888776653
No 218
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.84 E-value=0.00011 Score=59.71 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=57.2
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHH---HHhCCeEEEEecCC
Q psy2518 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLS---RALGCRLMRTSVKE 170 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~---~~~~~~~~e~Sa~~ 170 (208)
...++|.+++|.+.....+...+.+++...... +.|+++|.||+||.+... .+..+.+. ...|++++.+||++
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecCC
Confidence 468999999998765333455556665544333 678899999999954211 11133333 34578999999999
Q ss_pred CCCHHHHHHHH
Q psy2518 171 DINVNSIFRYL 181 (208)
Q Consensus 171 ~~~i~~~f~~i 181 (208)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999887643
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.16 E-value=6.6e-05 Score=61.44 Aligned_cols=135 Identities=13% Similarity=0.037 Sum_probs=72.0
Q ss_pred eeeEEEecCceEEE--EEEeeecC------ccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-------hh
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRD------SFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-------IT 91 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~------~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-------~~ 91 (208)
..+++++|.+++|| +++.+... .......| |.......+.++.. +.+.||||...... ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence 35799999999999 34544433 11111111 22222333444432 78999999532221 11
Q ss_pred Hhhh---cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q psy2518 92 KAYY---RGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS 167 (208)
Q Consensus 92 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 167 (208)
...+ +..+.++++.+..+..-+..+.. +..... +.|++++.||.|..+... .....+.+.+..|......+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTK-LEKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBTTTBCSSC
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccccc-HHHHHHHHHHhcCCccCCCC
Confidence 1222 67899999998743211111100 111111 579999999999855322 23334455666666555555
Q ss_pred cCCC
Q psy2518 168 VKED 171 (208)
Q Consensus 168 a~~~ 171 (208)
+...
T Consensus 312 ~~~~ 315 (369)
T 3ec1_A 312 KRYA 315 (369)
T ss_dssp GGGT
T ss_pred chhh
Confidence 5443
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.07 E-value=3.1e-05 Score=63.39 Aligned_cols=134 Identities=11% Similarity=0.045 Sum_probs=67.7
Q ss_pred eeeEEEecCceEEE--EEEeeecCcc-----ccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc----hhHh--
Q psy2518 27 ITKAYYRGAQACVI--TFSTIDRDSF-----EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA----ITKA-- 93 (208)
Q Consensus 27 ~~ki~~vG~s~~gk--~~~~~~~~~f-----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~~~~-- 93 (208)
..+++++|.+++|| +++.+..... .....+..|.......+.++.. +.++||||...... +...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 35799999999999 3454443311 1111222222222333444433 78999999633221 1111
Q ss_pred --h--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q psy2518 94 --Y--YRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168 (208)
Q Consensus 94 --~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 168 (208)
+ .+..+.++++.+..+..-+..+.. +..... ..|++++.||.|..+... ..+..+.+.+..|......++
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSCH
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCch
Confidence 1 357788888888643211111100 111111 679999999999865322 233344455555654444443
No 221
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.06 E-value=0.0034 Score=53.31 Aligned_cols=102 Identities=11% Similarity=0.093 Sum_probs=61.3
Q ss_pred EEEEEEEeCCChhhhcc-hh---Hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCE-EEEEeCCCCCCCC
Q psy2518 73 EVRLMLWDTAGQEEFDA-IT---KAY--YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT-VLVQNKIDLLDQS 145 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~-~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pi-ivvgnK~Dl~~~~ 145 (208)
.+.+.|+||+|...... +. ... ...+|.+++|.|.+........ ...+.. ..|+ .+|.||+|.....
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~---~~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD---KVDVASVIVTKLDGHAKG 256 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH---HHCCCCEEEECTTSCCCC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh---hcCceEEEEeCCccccch
Confidence 35689999999643211 11 111 2378999999999875432211 222222 2464 7889999975321
Q ss_pred CCCHHHHHHHHHHhCCeE------------------EEEecCCCCC-HHHHHHHHHHH
Q psy2518 146 VVAPEEADLLSRALGCRL------------------MRTSVKEDIN-VNSIFRYLTTK 184 (208)
Q Consensus 146 ~v~~~~~~~~~~~~~~~~------------------~e~Sa~~~~~-i~~~f~~i~~~ 184 (208)
..+.......+.++ +.+||..|.| +.++++.+.+.
T Consensus 257 ----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 257 ----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 11223344455443 3468889988 98888888765
No 222
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.03 E-value=0.0062 Score=50.59 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=30.5
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH-------HHHhCCeEEEEec
Q psy2518 100 ACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL-------SRALGCRLMRTSV 168 (208)
Q Consensus 100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~-------~~~~~~~~~e~Sa 168 (208)
+++++.|....-+-.++ .++..+ ....|+|+|.||+|... .++...+ ....|++++.+|.
T Consensus 151 ~v~fI~d~~~~l~~~Di-eilk~L---~~~~~vI~Vi~KtD~Lt-----~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDL-VTMKKL---DSKVNIIPIIAKADAIS-----KSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEEECCCC---CHHHH-HHHHHT---CSCSEEEEEESCGGGSC-----HHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEEeCCCCCCCHHHH-HHHHHH---hhCCCEEEEEcchhccc-----hHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 35566666544333221 222222 23789999999999743 3332222 1224667777775
No 223
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.96 E-value=0.0011 Score=49.90 Aligned_cols=48 Identities=35% Similarity=0.692 Sum_probs=39.8
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~ 52 (208)
...+..+.|.+||||||++|+.+.+.++.+..++...+......+|..
T Consensus 56 ~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~ 103 (216)
T 4dkx_A 56 YLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQ 103 (216)
T ss_dssp ECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHT
T ss_pred EecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHH
Confidence 467888999999999999999999999999999887666555555554
No 224
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.87 E-value=0.0025 Score=49.71 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=26.8
Q ss_pred cCCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518 96 RGAQACVITFSTI-DRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 96 ~~~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~ 143 (208)
..+++++++.|.. .+-+-.. ...+..+.+ ..++++|.+|+|...
T Consensus 110 aRal~~lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 110 TRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp CSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGGSC
T ss_pred heeeeeeEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEeccccCC
Confidence 3478889998854 2222222 223333433 378999999999743
No 225
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.41 E-value=0.00026 Score=59.69 Aligned_cols=101 Identities=10% Similarity=-0.019 Sum_probs=56.7
Q ss_pred ceeeeEEEecCceEEEE-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhh--hcchh--------Hh
Q psy2518 25 DAITKAYYRGAQACVIT-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--FDAIT--------KA 93 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--~~~~~--------~~ 93 (208)
....+|+++|..|+||+ +-+.+.........+|.+...........+......+||..|.+. .+..+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999993 322222222111222222110000001112223457899999843 33333 55
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy2518 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENE 126 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 126 (208)
++..+++.++|+|.++. +.+....|+..+.+.
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 67778898999999987 666677787766654
No 226
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.28 E-value=0.014 Score=48.33 Aligned_cols=153 Identities=12% Similarity=0.085 Sum_probs=76.8
Q ss_pred eeEEEecCceEEE-EEEeeecCccccc-ccccc-ccce--eeEEEEECCeEEEEEEEeCCChhhhcchhHh-----hhcC
Q psy2518 28 TKAYYRGAQACVI-TFSTIDRDSFEAA-HSWKM-KVSI--KRTIKECEGEEVRLMLWDTAGQEEFDAITKA-----YYRG 97 (208)
Q Consensus 28 ~ki~~vG~s~~gk-~~~~~~~~~f~~~-~~~t~-~~~~--~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~-----~~~~ 97 (208)
..+.++|.+|+|| ++.+.+.+-..+. -.-++ +.+. .....+ ....-.+.+||++|.......... -+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 4688999999999 4433333322111 00011 1010 011111 111114789999985321111111 2334
Q ss_pred CcEEEEEEeCC--ChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC-------CCCCCCHHHHHHHHH--------HhC
Q psy2518 98 AQACVITFSTI--DRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL-------DQSVVAPEEADLLSR--------ALG 160 (208)
Q Consensus 98 ~d~ii~v~d~~--~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~-------~~~~v~~~~~~~~~~--------~~~ 160 (208)
.+.+++ +|.. .+.-.. +...+... +.|+++|.||.|+. .-.....++..+..+ +.+
T Consensus 149 ~~~~~~-lS~G~~~kqrv~----la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDID----IAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp CSEEEE-EESSCCCHHHHH----HHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCeEE-eCCCCccHHHHH----HHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555 7765 332221 12222222 57999999999862 112233333332222 222
Q ss_pred ---CeEEEEec--CCCCCHHHHHHHHHHHHHHH
Q psy2518 161 ---CRLMRTSV--KEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 161 ---~~~~e~Sa--~~~~~i~~~f~~i~~~~~~~ 188 (208)
...+.+|+ ..+.|++++.+.+.+.+...
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 26788999 67778999999988776543
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.16 E-value=0.00093 Score=51.95 Aligned_cols=55 Identities=9% Similarity=0.012 Sum_probs=30.6
Q ss_pred eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518 28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE 86 (208)
Q Consensus 28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 86 (208)
++++++|.+++|| +++++...... ...++.|+......+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 6999999999999 34555444432 3344455444333343332 479999999654
No 228
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.67 E-value=0.31 Score=35.42 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=54.6
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCEEEEEeCCCCCCCCCCCHH
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC---GEIPTVLVQNKIDLLDQSVVAPE 150 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~piivvgnK~Dl~~~~~v~~~ 150 (208)
+.+.|.|+++.. .......+..+|.++++...+... ..+...+..+.+.. ++.++.+|.|++|... . ..+
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~-~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--T-MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--E-EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--h-HHH
Confidence 567899998764 233455667799999999887544 66666666665443 2567789999998532 1 223
Q ss_pred HHHHHHHHhCCeEE
Q psy2518 151 EADLLSRALGCRLM 164 (208)
Q Consensus 151 ~~~~~~~~~~~~~~ 164 (208)
+..+..+.++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 44555555665444
No 229
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=92.44 E-value=0.018 Score=46.22 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=25.8
Q ss_pred ceEEEEEeeccCccccce---eeeEEEecCceEEEEE
Q psy2518 9 EEVRLMLWDTAGQEEFDA---ITKAYYRGAQACVITF 42 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~---~~ki~~vG~s~~gk~~ 42 (208)
..+.|.+||||||++|+. ....++.|..++.-.+
T Consensus 44 ~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~ 80 (331)
T 3r7w_B 44 TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI 80 (331)
T ss_dssp SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence 458999999999999974 2366677877766544
No 230
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.20 E-value=0.012 Score=46.14 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=29.7
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE 85 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 85 (208)
...++++++|.+++|| +++++...... ...++.|+......+.++. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCcee-ecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 3468899999999999 34554443321 1222222221122233332 47899999964
No 231
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.14 E-value=0.86 Score=33.54 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=55.4
Q ss_pred EEEEEEEeCCCh-hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH
Q psy2518 73 EVRLMLWDTAGQ-EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE 151 (208)
Q Consensus 73 ~~~l~i~Dt~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~ 151 (208)
.+.+.|.||++. .. ......+..+|.++++...+ ..+...+...+..+.+.. +.++.+|.|+.|.... ...++
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTS--CHHHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccc--hHHHH
Confidence 345789999875 32 23455677899999999876 566666666666665533 4668899999985320 12344
Q ss_pred HHHHHHHhCCeEE
Q psy2518 152 ADLLSRALGCRLM 164 (208)
Q Consensus 152 ~~~~~~~~~~~~~ 164 (208)
..+..++++.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 5555555665443
No 232
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.89 E-value=0.6 Score=38.89 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=51.3
Q ss_pred EEEEEEeCCChhhh-----cchhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC
Q psy2518 74 VRLMLWDTAGQEEF-----DAITK-AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV 147 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~-----~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v 147 (208)
+.+.|.||+|.... ..+.. .....+|.+++|.|.+......+.. ..+... -.+..+|.||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~--~~i~gVIlTKlD~~~---- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA--TPIGSIIVTKLDGSA---- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS--CTTEEEEEECCSSCS----
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh--CCCeEEEEECCCCcc----
Confidence 56889999995321 11111 1233689999999988654432221 222221 245568899999743
Q ss_pred CHHHHHHHHHHhCCeEEEEec
Q psy2518 148 APEEADLLSRALGCRLMRTSV 168 (208)
Q Consensus 148 ~~~~~~~~~~~~~~~~~e~Sa 168 (208)
....+.......+.++..++.
T Consensus 254 ~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp SHHHHHHHHHTTCCCEEEEEC
T ss_pred cccHHHHHHHHHCCCEEEEEc
Confidence 233455566677888877775
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.22 E-value=0.96 Score=35.47 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=56.0
Q ss_pred EEEEEEEeCCChhh--hc-chhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCC
Q psy2518 73 EVRLMLWDTAGQEE--FD-AITK-----AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLD 143 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~--~~-~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~ 143 (208)
.+.+.|.||+|... .. .+.. .....+|.+++|.|....... ......+.. ..| ..+|.||.|...
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHHHh---hCCCCEEEEeCCCCCc
Confidence 35689999999755 21 1111 124578999999998753221 111222222 355 678899999632
Q ss_pred CCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 144 QSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 144 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
....+...+...+.++..++ .|+++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 23445667777888887776 5666654
No 234
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.73 E-value=2.6 Score=32.75 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=55.0
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEE-EEEeCCCCCCCCCCCH
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTV-LVQNKIDLLDQSVVAP 149 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~pii-vvgnK~Dl~~~~~v~~ 149 (208)
.+.+.|.||++.-... .....+..+|.+++|...+ ..+...+...+..+.... .+.+++ +|.|+++- +
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~---~---- 226 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA---T---- 226 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC---C----
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc---H----
Confidence 3567899997643211 1234567899999998765 567777777776666542 245554 88999983 1
Q ss_pred HHHHHHHHHhCCeEEE
Q psy2518 150 EEADLLSRALGCRLMR 165 (208)
Q Consensus 150 ~~~~~~~~~~~~~~~e 165 (208)
+..+++.+.++.+++.
T Consensus 227 ~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcee
Confidence 4456677777776654
No 235
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=90.04 E-value=0.095 Score=42.39 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=28.4
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..+.+.+||+|||++|+.....++-|..++.-.+.
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~d 215 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAA 215 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEE
Confidence 67899999999999999999999998888776544
No 236
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.98 E-value=3.1 Score=30.84 Aligned_cols=87 Identities=9% Similarity=0.032 Sum_probs=58.8
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHH
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEE 151 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~ 151 (208)
.+.+.|.|+++... ......+..+|.++++...+ ..+...+...+..+.+... ...+-+|.|+++... ....
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~-- 190 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS-- 190 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH--
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH--
Confidence 35678999987532 34455677899999999876 6777777777777765543 455788899998533 2333
Q ss_pred HHHHHHHhCCeEEEEe
Q psy2518 152 ADLLSRALGCRLMRTS 167 (208)
Q Consensus 152 ~~~~~~~~~~~~~e~S 167 (208)
+.+.+.++.+++.+-
T Consensus 191 -~~~~~~~~~~v~~~i 205 (245)
T 3ea0_A 191 -DEIEKVIGRPISKRI 205 (245)
T ss_dssp -HHHHHHHTSCEEEEE
T ss_pred -HHHHHHhCCCeEEEC
Confidence 334556777766553
No 237
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.78 E-value=0.56 Score=38.95 Aligned_cols=84 Identities=10% Similarity=0.039 Sum_probs=47.4
Q ss_pred EEEEEEEeCCChhhhcc-h---hHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC-C-EEEEEeCCCCCCC
Q psy2518 73 EVRLMLWDTAGQEEFDA-I---TKA--YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEI-P-TVLVQNKIDLLDQ 144 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~-~---~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p-iivvgnK~Dl~~~ 144 (208)
.+.+.|.||+|...... + ... ....+|.+++|.|.+..... .... ....... | ..+|.||+|....
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~---~~~~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQA---KAFKEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHH---HHHHTTSCSCEEEEEECSSSCST
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHH---HHHhhcccCCeEEEEeCCCCccc
Confidence 35679999999643211 1 111 12368999999998765421 1112 2222234 5 7889999997431
Q ss_pred CCCCHHHHHHHHHHhCCeEEEE
Q psy2518 145 SVVAPEEADLLSRALGCRLMRT 166 (208)
Q Consensus 145 ~~v~~~~~~~~~~~~~~~~~e~ 166 (208)
...+.......+.++..+
T Consensus 254 ----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEE
T ss_pred ----hHHHHHHHHHHCCCEEEe
Confidence 123344566666665444
No 238
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=89.22 E-value=0.16 Score=44.07 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=34.8
Q ss_pred EEEEEeCCCh-------------hhhcchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518 75 RLMLWDTAGQ-------------EEFDAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKID 140 (208)
Q Consensus 75 ~l~i~Dt~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~D 140 (208)
.+.+.|.||. .....+...+++....+++++-..+.+ .-.....+...+... ..+.|+|.||.|
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~--g~rtI~VlTK~D 225 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE--GDRTIGILTKPD 225 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS--CCSEEEEEECGG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc--CCceEEEecchh
Confidence 3788998852 233344555555554444444443322 111122333333211 578999999999
Q ss_pred CC
Q psy2518 141 LL 142 (208)
Q Consensus 141 l~ 142 (208)
+.
T Consensus 226 lv 227 (608)
T 3szr_A 226 LV 227 (608)
T ss_dssp GS
T ss_pred hc
Confidence 74
No 239
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=88.31 E-value=0.1 Score=41.79 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=29.2
Q ss_pred eEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
.+.+++||++||+++++.-.-++-|..++.-.+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~ 198 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV 198 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEE
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEE
Confidence 478999999999999999999999988887644
No 240
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=88.09 E-value=0.17 Score=41.58 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=29.6
Q ss_pred EEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 11 ~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
+.+.+||+|||++|+.....++-|..++.-.+.
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~d 249 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVA 249 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEE
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEE
Confidence 789999999999999999999999988876554
No 241
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.17 E-value=0.16 Score=37.55 Aligned_cols=40 Identities=30% Similarity=0.596 Sum_probs=30.1
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 44 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~ 44 (208)
..++..+.+.+||++|+++|....+.++.+..++...+..
T Consensus 69 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 108 (214)
T 3q3j_B 69 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDI 108 (214)
T ss_dssp EC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEET
T ss_pred EECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEEC
Confidence 4567788999999999999988888777777776655543
No 242
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=86.65 E-value=0.4 Score=34.99 Aligned_cols=39 Identities=46% Similarity=0.819 Sum_probs=27.7
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..++..+.+.+||++|+++|......++.+..++...+.
T Consensus 51 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 89 (212)
T 2j0v_A 51 AVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS 89 (212)
T ss_dssp ECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEE
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEE
Confidence 356777899999999999998877766666666554443
No 243
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=86.61 E-value=0.52 Score=34.60 Aligned_cols=35 Identities=34% Similarity=0.759 Sum_probs=14.1
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..++..+.+.+||++|+++|......++-+..++.
T Consensus 76 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 76 QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp EETTEEEEEEEEEC---------------CEEEEE
T ss_pred EECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 34667789999999999988777666555544444
No 244
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=86.36 E-value=0.14 Score=41.12 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=30.1
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..+.+++||++||+++++.-.-++-|..++.-.+.
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~d 193 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTS 193 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEE
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEE
Confidence 35789999999999999999999999888876544
No 245
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.34 E-value=0.38 Score=34.24 Aligned_cols=37 Identities=27% Similarity=0.555 Sum_probs=26.7
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 41 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~ 41 (208)
..++..+.+.+||++|+++|....+.++-+..++...
T Consensus 49 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 85 (184)
T 1m7b_A 49 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 85 (184)
T ss_dssp ECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred EECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEE
Confidence 3466788999999999999887766655555555433
No 246
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=85.88 E-value=2.7 Score=31.83 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=46.9
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKID 140 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~D 140 (208)
.+.+.|.|+++... ......+..+|.++++...+ ..+...+...+..+.+...+.++.+|.|+++
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 35678999987542 23455667799999999986 4566777776666666554678889999984
No 247
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.74 E-value=3.1 Score=34.49 Aligned_cols=91 Identities=10% Similarity=0.054 Sum_probs=54.7
Q ss_pred EEEEEEEeCCChhh--h-----cchhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC
Q psy2518 73 EVRLMLWDTAGQEE--F-----DAITK-AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ 144 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~--~-----~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~ 144 (208)
.+.+.|.||+|... . ..+.. ......+.+++|.|........+. ...+... -.+..+|.||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~--~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA--SPIGSVIITKMDGTA- 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH--CSSEEEEEECGGGCS-
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc--cCCcEEEEecccccc-
Confidence 35577999999533 1 11111 012256899999999865433222 2222222 246788999999632
Q ss_pred CCCCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2518 145 SVVAPEEADLLSRALGCRLMRTSVKEDINV 174 (208)
Q Consensus 145 ~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i 174 (208)
.-..+.......+.++..++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 334556667778999888876 5554
No 248
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=85.32 E-value=0.45 Score=34.81 Aligned_cols=38 Identities=29% Similarity=0.601 Sum_probs=27.3
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
..++..+.+.+||++|+++|....+.++.+..++...+
T Consensus 70 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 107 (205)
T 1gwn_A 70 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 107 (205)
T ss_dssp ESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred EECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEE
Confidence 34667889999999999998877666555555554433
No 249
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=85.29 E-value=0.44 Score=34.19 Aligned_cols=39 Identities=38% Similarity=0.689 Sum_probs=29.3
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..++..+.+.+||++|+++|......++.+..++...+.
T Consensus 65 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 103 (194)
T 3reg_A 65 KYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFA 103 (194)
T ss_dssp EETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEE
T ss_pred EECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEE
Confidence 356778889999999999998777776666666654443
No 250
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.15 E-value=0.89 Score=31.36 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=17.2
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..++..+.+.+||++|++++....+.++.+..++...+.
T Consensus 43 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 43 VVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp EETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred EECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 456778899999999999988887777766666554443
No 251
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=85.15 E-value=0.35 Score=39.02 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=29.6
Q ss_pred eEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
.+.+.+||++||++++.....++-|..++.-.+.
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~d 225 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVA 225 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEE
Confidence 5789999999999999999999999888876544
No 252
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=84.96 E-value=0.31 Score=34.81 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=28.4
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
..++..+.+.+||++|+++|......++.+..++.-.+
T Consensus 68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 105 (198)
T 3t1o_A 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVA 105 (198)
T ss_dssp CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEE
T ss_pred cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEE
Confidence 45677889999999999988887776666655554433
No 253
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=84.78 E-value=0.48 Score=33.47 Aligned_cols=36 Identities=39% Similarity=0.756 Sum_probs=25.4
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
..++..+.+.+||++|+++|......++-+..++..
T Consensus 47 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 47 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred EECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 356778899999999999887665555544444443
No 254
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=84.38 E-value=5.9 Score=29.11 Aligned_cols=84 Identities=8% Similarity=0.101 Sum_probs=52.5
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHH
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA 152 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~ 152 (208)
.+.+.|.|+++... ......+..+|.++++...+ ..+...+...+..+.+. +....-+|.|+.+..... .. .
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~~~-~~---~ 182 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA-GLAILGFVLNRYGRSDRD-IP---P 182 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT-TCEEEEEEEEEETSCTTC-CC---H
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC-CCceEEEEEecCCcccch-hH---H
Confidence 35678999987533 33455678899999999876 56676666666666554 223456788999853322 22 2
Q ss_pred HHHHHHhCCeEE
Q psy2518 153 DLLSRALGCRLM 164 (208)
Q Consensus 153 ~~~~~~~~~~~~ 164 (208)
..+.+..+.+++
T Consensus 183 ~~~~~~~~~~~~ 194 (237)
T 1g3q_A 183 EAAEDVMEVPLL 194 (237)
T ss_dssp HHHHHHHCSCEE
T ss_pred HHHHHHhCccce
Confidence 334455666543
No 255
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=84.35 E-value=0.5 Score=34.08 Aligned_cols=36 Identities=39% Similarity=0.656 Sum_probs=25.3
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
..++..+.+.+||++|+++|......++.+..++..
T Consensus 62 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 97 (201)
T 2q3h_A 62 SVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL 97 (201)
T ss_dssp EETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred EECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence 345677899999999999888766555545444443
No 256
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=84.09 E-value=4 Score=30.89 Aligned_cols=91 Identities=11% Similarity=0.063 Sum_probs=53.1
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEE-EEEeCCCCCC----CC-
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLD----QS- 145 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pii-vvgnK~Dl~~----~~- 145 (208)
..+.+.|.||++...........+..+|.++++...+ ..+...+...+..+.+. +.+++ +|.|+.|... ++
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~ 203 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEET--NTSVLGLVENMSYFVCPNCGHKS 203 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHTT--TCCEEEEEETTCCEECTTTCCEE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHhC--CCCEEEEEECCCccCCccccccc
Confidence 3466889999875321111112233689999998776 44566666666655543 56776 8899987411 11
Q ss_pred CC-CHHHHHHHHHHhCCeEEE
Q psy2518 146 VV-APEEADLLSRALGCRLMR 165 (208)
Q Consensus 146 ~v-~~~~~~~~~~~~~~~~~e 165 (208)
.. ..+..+.+.+.++.+++.
T Consensus 204 ~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 204 YIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp CTTCCCCHHHHHHHTTCSEEE
T ss_pred ccccccHHHHHHHHcCCCeEE
Confidence 11 122345566777877654
No 257
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=84.05 E-value=0.76 Score=31.81 Aligned_cols=35 Identities=43% Similarity=0.826 Sum_probs=19.5
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..++..+.+.+||++|++++......++-+..++.
T Consensus 49 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 49 NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp ESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred EECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 34567889999999999887776655554444443
No 258
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.90 E-value=0.83 Score=32.02 Aligned_cols=36 Identities=50% Similarity=0.923 Sum_probs=19.5
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
..++..+.+.+||++|++++.....-++.+..++.-
T Consensus 54 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (180)
T 2g6b_A 54 DVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL 89 (180)
T ss_dssp EETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred EECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEE
Confidence 346677899999999999887766655555444443
No 259
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=83.70 E-value=0.53 Score=33.71 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=23.4
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 38 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~ 38 (208)
.+++..+.+.+||++|+++|....+.++.+..++
T Consensus 60 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 60 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp ESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred EECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 3566778999999999998875554444444333
No 260
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=83.52 E-value=5.7 Score=29.83 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=52.8
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHH
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA 152 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~ 152 (208)
.+.+.|.|+++... ......+..+|.++++...+ ..+...+...+..+.+. +..+.-+|.|+.+.... ....
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~~----~~~~ 181 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL-GTKVLGVVVNRITTLGI----EMAK 181 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH-TCEEEEEEEEEECTTTH----HHHH
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc-CCCeeEEEEccCCcccc----cchH
Confidence 35678999987433 33445567899999998765 45666666666666554 22445678899985321 1344
Q ss_pred HHHHHHhCCeEE
Q psy2518 153 DLLSRALGCRLM 164 (208)
Q Consensus 153 ~~~~~~~~~~~~ 164 (208)
.++.+..+.+++
T Consensus 182 ~~~~~~~~~~~~ 193 (263)
T 1hyq_A 182 NEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHTTSCEE
T ss_pred HHHHHHhCCCeE
Confidence 555566676543
No 261
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=82.95 E-value=4.2 Score=30.62 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=42.3
Q ss_pred eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH---Hhhc-CCCCEE-EEEeCCCC
Q psy2518 72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---ENEC-GEIPTV-LVQNKIDL 141 (208)
Q Consensus 72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~---~~~~-~~~pii-vvgnK~Dl 141 (208)
..+.+.|.||++.... .....+..+|.++++...+. .++..+...+..+ .+.. ++.+++ +|.|+.|.
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG 181 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence 3456889999875322 23345567999999999774 4555444444333 3322 256664 88999985
No 262
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=82.83 E-value=0.68 Score=32.62 Aligned_cols=39 Identities=31% Similarity=0.565 Sum_probs=29.0
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..++..+.+.+||++|+++|....+.++.+..++...+.
T Consensus 48 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 86 (181)
T 3t5g_A 48 TVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYS 86 (181)
T ss_dssp EETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEE
T ss_pred EECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEE
Confidence 456777899999999999988777766666666554443
No 263
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=82.30 E-value=0.7 Score=33.46 Aligned_cols=35 Identities=51% Similarity=1.033 Sum_probs=26.1
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
.++..+.+.+||++|+++|.....-++-+..++..
T Consensus 52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vil 86 (206)
T 2bcg_Y 52 LDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 86 (206)
T ss_dssp ETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred ECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEE
Confidence 45677899999999999988776665555555443
No 264
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=82.13 E-value=0.64 Score=32.81 Aligned_cols=34 Identities=53% Similarity=1.016 Sum_probs=16.4
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.++..+.+.+||++|+++|......++.+..++.
T Consensus 52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 52 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp ETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred ECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4567789999999999888766555444444443
No 265
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=81.76 E-value=0.41 Score=34.76 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=19.4
Q ss_pred EEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 11 ~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
+.+.+||++|+++++...+.++.+..++.-.+
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 78999999999988876665555555554433
No 266
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=81.54 E-value=0.36 Score=35.16 Aligned_cols=35 Identities=34% Similarity=0.690 Sum_probs=24.2
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..++..+.+.+||++|+++|......++.+..++.
T Consensus 72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 72 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred EECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 45677888999999999888766555554444443
No 267
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=81.38 E-value=12 Score=27.46 Aligned_cols=64 Identities=13% Similarity=0.124 Sum_probs=44.4
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKID 140 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~D 140 (208)
.+.+.|.||++.... .....+..+|.++++...+ ..++..+......+.+. +-..+.+|.|+.+
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~-~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDL-GIKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHH-TCSCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHc-CCccEEEEEeCCC
Confidence 456789999875432 4456678899999999875 56676666655533333 2355778899998
No 268
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=81.32 E-value=0.37 Score=34.80 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=24.7
Q ss_pred CceEEEEEeeccCccccceee---eEEEecCceEEE
Q psy2518 8 GEEVRLMLWDTAGQEEFDAIT---KAYYRGAQACVI 40 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~---ki~~vG~s~~gk 40 (208)
+..+.+.+||++|+++|.... +.++.+..++..
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~ 101 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIY 101 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEE
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEE
Confidence 667899999999999887766 555556555543
No 269
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=81.31 E-value=0.36 Score=34.62 Aligned_cols=37 Identities=22% Similarity=0.508 Sum_probs=27.3
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
++..+.+.+||++|++++....+.++-+..++...+.
T Consensus 59 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 95 (199)
T 4bas_A 59 EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVD 95 (199)
T ss_dssp EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3456789999999999998887766666666554444
No 270
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=81.19 E-value=0.69 Score=34.10 Aligned_cols=37 Identities=51% Similarity=0.991 Sum_probs=28.0
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
.++..+.+.+||++|+++|......++-+..++...+
T Consensus 57 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~ 93 (223)
T 3cpj_B 57 IEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVY 93 (223)
T ss_dssp ETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEE
T ss_pred ECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEE
Confidence 4566789999999999999887777666666555433
No 271
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=80.97 E-value=0.97 Score=32.53 Aligned_cols=38 Identities=45% Similarity=0.974 Sum_probs=28.8
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
..++..+.+.+||++|++++......++-+..++...+
T Consensus 76 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 113 (199)
T 3l0i_B 76 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 113 (199)
T ss_dssp EETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC
T ss_pred EECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEE
Confidence 34667789999999999999998888887777765533
No 272
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=80.71 E-value=0.84 Score=32.99 Aligned_cols=34 Identities=38% Similarity=0.785 Sum_probs=24.3
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.++..+.+.+||++|+++|....+.++-+..++.
T Consensus 68 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 68 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp ETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 4566789999999999888766665554444443
No 273
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=80.67 E-value=0.64 Score=37.63 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=22.0
Q ss_pred eEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
.+.+.+||++||++++.....++-|..++.-.+.
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~d 233 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVS 233 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEE
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEE
Confidence 4789999999999999999988888887765443
No 274
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=80.66 E-value=0.76 Score=32.84 Aligned_cols=35 Identities=49% Similarity=1.069 Sum_probs=25.7
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
.++..+.+.+||++|+++|....+.++-+..++..
T Consensus 65 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 99 (191)
T 2a5j_A 65 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 99 (191)
T ss_dssp ETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred ECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEE
Confidence 45677899999999999888776655555555443
No 275
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=80.60 E-value=0.66 Score=33.83 Aligned_cols=35 Identities=54% Similarity=1.025 Sum_probs=25.2
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
.++..+.+.+||++|+++|......++.+..++..
T Consensus 70 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (201)
T 2ew1_A 70 INGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 104 (201)
T ss_dssp ETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred ECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 45667899999999999887766555555554443
No 276
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=80.19 E-value=0.43 Score=33.65 Aligned_cols=33 Identities=45% Similarity=0.831 Sum_probs=16.9
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 38 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~ 38 (208)
.++..+.+.+||++|+++|......++-+..++
T Consensus 51 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 51 VNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp -------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred ECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 456678888999999988875555444444333
No 277
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=79.87 E-value=1.2 Score=32.13 Aligned_cols=34 Identities=47% Similarity=0.976 Sum_probs=24.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.++..+.+.+||++|++++......++-+..++.
T Consensus 52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 52 VDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp SSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred ECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 4566789999999999988776655554444443
No 278
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=79.82 E-value=1.1 Score=31.33 Aligned_cols=35 Identities=51% Similarity=1.048 Sum_probs=25.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
.++..+.+.+||++|++++......++-+..++.-
T Consensus 53 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 87 (181)
T 3tw8_B 53 INGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 87 (181)
T ss_dssp ETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEE
T ss_pred ECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEE
Confidence 45667899999999998888776665555554443
No 279
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=79.76 E-value=0.45 Score=34.05 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=18.0
Q ss_pred ccCCceEEEEEeeccCccccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFD 25 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~ 25 (208)
.+++..+.+.+||++|+++|+
T Consensus 61 ~~~~~~~~l~i~Dt~G~~~~~ 81 (184)
T 3ihw_A 61 VVDGQSYLLLIRDEGGPPELQ 81 (184)
T ss_dssp EETTEEEEEEEEECSSSCCHH
T ss_pred EECCEEEEEEEEECCCChhhh
Confidence 456778999999999999887
No 280
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=79.25 E-value=1.8 Score=30.63 Aligned_cols=34 Identities=38% Similarity=0.630 Sum_probs=16.6
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.++..+.+.+||++|++++......++.+..++.
T Consensus 64 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 64 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp ETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4566788999999999888777666655555544
No 281
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=79.21 E-value=5.1 Score=29.94 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=46.1
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-------CCCCEEEEEeCCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC-------GEIPTVLVQNKIDL 141 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-------~~~piivvgnK~Dl 141 (208)
.+.+.|.|+++... ......+..+|.++++.+.+ ..+...+...+..+.... +...+-+|.|+.|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 45688999987433 24556677899999999875 567777766666665432 12467788999884
No 282
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=79.10 E-value=0.73 Score=32.52 Aligned_cols=35 Identities=34% Similarity=0.476 Sum_probs=25.0
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..++..+.+.+||++|++++....+.++.+..++.
T Consensus 60 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp EETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred EeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 45677788999999999888776665555544444
No 283
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=78.61 E-value=0.86 Score=31.83 Aligned_cols=33 Identities=42% Similarity=1.006 Sum_probs=22.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 38 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~ 38 (208)
..+..+.+.+||++|++++......++-+..++
T Consensus 51 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 51 VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp ETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 456678999999999888766554444443333
No 284
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=78.49 E-value=1 Score=31.07 Aligned_cols=33 Identities=88% Similarity=1.413 Sum_probs=22.7
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 38 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~ 38 (208)
.++..+.+.+||++|++++....+.++-+..++
T Consensus 49 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 49 VNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp ETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred ECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 346678999999999988876655444444333
No 285
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.41 E-value=1.1 Score=32.62 Aligned_cols=34 Identities=38% Similarity=0.785 Sum_probs=23.8
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.++..+.+.+||++|++++....+.++-+..++.
T Consensus 68 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 68 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp ETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 4567789999999999888765555444444443
No 286
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=79.72 E-value=0.43 Score=34.60 Aligned_cols=35 Identities=40% Similarity=0.745 Sum_probs=27.2
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
.++..+.+.+||++|+++|......++-+..++.-
T Consensus 73 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 73 VDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 45667888999999999998888877766655544
No 287
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=78.20 E-value=1.4 Score=30.82 Aligned_cols=32 Identities=47% Similarity=0.982 Sum_probs=14.8
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
+..+.+.+||++|++++......++-+..++.
T Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp SCCEEEEEECCC----------CCSTTCCEEE
T ss_pred CcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 45678999999999888776655554444443
No 288
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=78.09 E-value=0.67 Score=33.62 Aligned_cols=35 Identities=49% Similarity=0.998 Sum_probs=25.6
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
.++..+.+.+||++|+++|......++-+..++..
T Consensus 73 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (201)
T 2hup_A 73 IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIL 107 (201)
T ss_dssp ETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEE
T ss_pred ECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEE
Confidence 45667899999999999888766655555555443
No 289
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=77.97 E-value=0.78 Score=32.08 Aligned_cols=35 Identities=40% Similarity=0.683 Sum_probs=26.0
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
.++..+.+.+||++|+++|....+.++-+..++..
T Consensus 52 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (181)
T 2fn4_A 52 VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 86 (181)
T ss_dssp ETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred ECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence 45667889999999999888777666655555544
No 290
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=77.77 E-value=0.99 Score=32.55 Aligned_cols=38 Identities=32% Similarity=0.553 Sum_probs=27.0
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
.++..+.+.+||++|++++......++.+..++...+.
T Consensus 67 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 104 (201)
T 3oes_A 67 LGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYS 104 (201)
T ss_dssp ----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEE
T ss_pred ECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEe
Confidence 45667889999999999998887777777666655444
No 291
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=77.74 E-value=1.1 Score=32.89 Aligned_cols=39 Identities=36% Similarity=0.724 Sum_probs=30.0
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..++..+.+.+||++|++++......++.+..++...+.
T Consensus 58 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 96 (221)
T 3gj0_A 58 HTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFD 96 (221)
T ss_dssp EETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEE
T ss_pred EECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEE
Confidence 456678899999999999998887777776666655443
No 292
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=77.73 E-value=0.97 Score=31.50 Aligned_cols=33 Identities=45% Similarity=0.796 Sum_probs=23.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 38 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~ 38 (208)
.++..+.+.+||++|++++.....-++-+..++
T Consensus 58 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 58 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp ETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred ECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 456678999999999988877665544444443
No 293
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=77.54 E-value=0.84 Score=32.22 Aligned_cols=36 Identities=47% Similarity=0.947 Sum_probs=25.7
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
..++..+.+.+||++|++++.....-++-+..++..
T Consensus 53 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 88 (186)
T 2bme_A 53 NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 88 (186)
T ss_dssp EETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred EECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEE
Confidence 345667899999999999888766555555554443
No 294
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=77.34 E-value=1 Score=31.54 Aligned_cols=34 Identities=41% Similarity=0.889 Sum_probs=24.3
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..+....+.+||++|++++....+.++-+..++.
T Consensus 56 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 56 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp ETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 4566789999999999888776655554444443
No 295
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=77.26 E-value=0.99 Score=32.08 Aligned_cols=38 Identities=45% Similarity=0.983 Sum_probs=27.2
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
..++..+.+.+||++|++++....+.++-+..++...+
T Consensus 58 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 95 (195)
T 1x3s_A 58 SVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVY 95 (195)
T ss_dssp EETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEE
T ss_pred EECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEE
Confidence 34567789999999999988877666655555544333
No 296
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=77.07 E-value=1.3 Score=31.49 Aligned_cols=33 Identities=48% Similarity=0.919 Sum_probs=23.0
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 38 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~ 38 (208)
..+..+.+.+||++|++++......++-+..++
T Consensus 66 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 66 RHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp ETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred ECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 456678999999999988776655444444443
No 297
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=77.01 E-value=0.99 Score=31.09 Aligned_cols=34 Identities=44% Similarity=0.919 Sum_probs=23.2
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.++..+.+.+||++|++++......++-+..++.
T Consensus 50 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 50 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp ETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred ECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4566788999999999887766554444444433
No 298
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=76.86 E-value=0.75 Score=31.70 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=24.0
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..++..+.+.+||++|++++......++.+..++.
T Consensus 45 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 45 EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp ESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred EECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 34566788999999999888766555444444443
No 299
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=76.54 E-value=1.1 Score=32.02 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=15.0
Q ss_pred ccCCceEEEEEeeccCccccce
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDA 26 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~ 26 (208)
..++..+.+.+||++|+++|..
T Consensus 63 ~~~~~~~~l~i~Dt~G~~~~~~ 84 (187)
T 3c5c_A 63 TVDHQPVHLRVMDTADLDTPRN 84 (187)
T ss_dssp EETTEEEEEEEEECCC---CCC
T ss_pred EECCEEEEEEEEECCCCCcchh
Confidence 3466778999999999987765
No 300
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=76.49 E-value=0.94 Score=31.37 Aligned_cols=34 Identities=18% Similarity=0.531 Sum_probs=23.9
Q ss_pred eEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
...+.+||++|++++....+-++-+..++.-.+.
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 83 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 83 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEE
Confidence 4678999999999888776666555555544333
No 301
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=76.39 E-value=0.77 Score=32.43 Aligned_cols=36 Identities=36% Similarity=0.613 Sum_probs=23.4
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
..++..+.+.+||++|++++......++-+..++..
T Consensus 46 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 46 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred EECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 356777889999999998887776655555555443
No 302
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=76.33 E-value=1.1 Score=30.94 Aligned_cols=34 Identities=44% Similarity=0.841 Sum_probs=23.9
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.++..+.+.+||++|++++.....-++-+..++.
T Consensus 47 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 47 INEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp ETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred ECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 4567788999999999888776555544444443
No 303
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=76.31 E-value=1.1 Score=31.95 Aligned_cols=36 Identities=47% Similarity=0.957 Sum_probs=25.9
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
.+++....+.+||++|++++....+.++.+..++..
T Consensus 66 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 101 (192)
T 2fg5_A 66 PCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI 101 (192)
T ss_dssp ECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred EeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEE
Confidence 345677899999999999888776655555554443
No 304
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=76.19 E-value=0.88 Score=31.79 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=22.0
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..+.+.+||++|+++|....+.++-+..++.
T Consensus 54 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 84 (178)
T 2hxs_A 54 LNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL 84 (178)
T ss_dssp EEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred CEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence 4689999999999888766555544444443
No 305
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=76.11 E-value=0.91 Score=32.82 Aligned_cols=38 Identities=45% Similarity=0.994 Sum_probs=27.9
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
.++..+.+.+||++|++++....+.++-+..++...+.
T Consensus 69 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 106 (200)
T 2o52_A 69 VGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 106 (200)
T ss_dssp ETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEE
T ss_pred ECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEE
Confidence 45667899999999999888877666666665554333
No 306
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=75.98 E-value=1.1 Score=30.89 Aligned_cols=25 Identities=56% Similarity=0.987 Sum_probs=18.8
Q ss_pred cCCceEEEEEeeccCccccceeeeE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKA 30 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki 30 (208)
..+..+.+.+||++|++++.....-
T Consensus 47 ~~~~~~~~~l~D~~G~~~~~~~~~~ 71 (170)
T 1g16_A 47 INGKKVKLQIWDTAGQERFRTITTA 71 (170)
T ss_dssp SSSCEEEEEEECCTTGGGTSCCCHH
T ss_pred ECCEEEEEEEEeCCCChhhhhhHHH
Confidence 4566788999999998887665433
No 307
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=75.88 E-value=1.3 Score=32.01 Aligned_cols=34 Identities=59% Similarity=1.039 Sum_probs=23.9
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.++..+.+.+||++|++++....+.++-+..++.
T Consensus 64 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 64 INGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp ETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred ECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 4566789999999999988776555554444443
No 308
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=75.78 E-value=0.44 Score=33.98 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=19.4
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCc
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQ 36 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s 36 (208)
+..+.+.+||++|+++|......++.|..
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 45778999999999988876555444433
No 309
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=75.63 E-value=23 Score=26.49 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=53.5
Q ss_pred EEEEEEEeCCChhhhcchh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCE-EEEEeCCCCCCCCCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAIT-KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPT-VLVQNKIDLLDQSVVA 148 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~pi-ivvgnK~Dl~~~~~v~ 148 (208)
.+.+.|.||++......+. ......+|.++++...+ ..+...+...+..+..... +.++ -+|.|+.+. ...
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~----~~~ 189 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV----ANE 189 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS----SCC
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc----chh
Confidence 3568899998753222221 11224799999998865 5667666666666655432 3444 578899873 123
Q ss_pred HHHHHHHHHHhCCeEE
Q psy2518 149 PEEADLLSRALGCRLM 164 (208)
Q Consensus 149 ~~~~~~~~~~~~~~~~ 164 (208)
.+..+.+.+.++.+++
T Consensus 190 ~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 190 YELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHcCCccc
Confidence 5556667777777655
No 310
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=75.30 E-value=1.1 Score=31.96 Aligned_cols=38 Identities=45% Similarity=0.974 Sum_probs=27.3
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
..++..+.+.+||++|++++......++-+..++...+
T Consensus 59 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 96 (196)
T 3tkl_A 59 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 96 (196)
T ss_dssp EETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEE
T ss_pred EECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEE
Confidence 34667789999999999988877666665555554433
No 311
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=74.97 E-value=1 Score=32.30 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 11 VRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 11 ~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..+.+||++|+++++.....++.+..++.
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 78899999999988765554444444443
No 312
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=74.71 E-value=1 Score=31.78 Aligned_cols=29 Identities=28% Similarity=0.713 Sum_probs=20.8
Q ss_pred EEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 11 VRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 11 ~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..+.+||++|++++....+-++-+..++.
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 68999999999988776655554444443
No 313
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=74.50 E-value=0.5 Score=32.63 Aligned_cols=34 Identities=18% Similarity=0.631 Sum_probs=24.2
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
..+.+.+||++|+++++...+.++-+..++.-.+
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 4578999999999988776665555555554433
No 314
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=74.48 E-value=0.82 Score=31.37 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=25.4
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
..++..+.+.+||++|++++......++-+..++..
T Consensus 45 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 45 EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp EETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred EECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 345667889999999998887766655555555443
No 315
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=74.33 E-value=1.2 Score=31.54 Aligned_cols=34 Identities=18% Similarity=0.500 Sum_probs=24.6
Q ss_pred eEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
...+.+||++|+++++...+-++-+..++.-.+.
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 98 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVD 98 (189)
T ss_dssp TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEE
T ss_pred CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEe
Confidence 4688999999999988877666655555544333
No 316
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=74.27 E-value=1.2 Score=31.97 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=19.2
Q ss_pred eEEEEEeeccCccccceeeeEEEecCc
Q psy2518 10 EVRLMLWDTAGQEEFDAITKAYYRGAQ 36 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s 36 (208)
.+.+.+||++|++++......++-+..
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 788999999999887765444443333
No 317
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=74.15 E-value=1.2 Score=32.03 Aligned_cols=33 Identities=45% Similarity=0.880 Sum_probs=23.1
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 38 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~ 38 (208)
.++..+.+.+||++|++++......++.+..++
T Consensus 52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 52 RNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp ETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred ECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 456678999999999988876654444444443
No 318
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=73.91 E-value=1.4 Score=30.37 Aligned_cols=33 Identities=42% Similarity=0.862 Sum_probs=22.6
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 38 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~ 38 (208)
..+....+.+||++|++++......++-+..++
T Consensus 50 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 50 YQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp ETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred ECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 456678899999999987776555544444443
No 319
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=73.71 E-value=0.87 Score=32.81 Aligned_cols=36 Identities=50% Similarity=0.935 Sum_probs=25.3
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
..++..+.+.+||++|+++|......++.+..++..
T Consensus 71 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 106 (199)
T 2p5s_A 71 IVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL 106 (199)
T ss_dssp EETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred EECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence 346677889999999998887765555555544443
No 320
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=72.86 E-value=1.2 Score=30.95 Aligned_cols=34 Identities=50% Similarity=1.066 Sum_probs=23.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.++..+.+.+||++|++++....+.++-+..++.
T Consensus 59 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 59 VSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp ETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 4566788999999999887766554444444433
No 321
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=72.82 E-value=1.2 Score=31.70 Aligned_cols=34 Identities=47% Similarity=0.813 Sum_probs=23.6
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.++..+.+.+||++|++++....+.++-+..++.
T Consensus 69 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 69 LGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp ETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred ECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 4566788999999999887766555554444443
No 322
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=72.39 E-value=0.98 Score=32.45 Aligned_cols=38 Identities=39% Similarity=0.780 Sum_probs=27.3
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
..++..+.+.+||++|++++....+.++-+..++...+
T Consensus 56 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 93 (206)
T 2bov_A 56 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF 93 (206)
T ss_dssp EETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred EECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEE
Confidence 34667789999999999988877666655555554433
No 323
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=71.87 E-value=1.1 Score=32.12 Aligned_cols=35 Identities=51% Similarity=1.026 Sum_probs=24.7
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
.++..+.+.+||++|++++....+-++-+..++.-
T Consensus 70 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iil 104 (192)
T 2il1_A 70 LRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL 104 (192)
T ss_dssp ETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEE
T ss_pred ECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 45667899999999998887765555544444443
No 324
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=71.79 E-value=1.1 Score=31.92 Aligned_cols=20 Identities=55% Similarity=1.125 Sum_probs=16.4
Q ss_pred cCCceEEEEEeeccCccccc
Q psy2518 6 CEGEEVRLMLWDTAGQEEFD 25 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~ 25 (208)
.++..+.+.+||++|++++.
T Consensus 64 ~~~~~~~~~l~Dt~G~~~~~ 83 (189)
T 1z06_A 64 IDGERIKIQLWDTAGQERFR 83 (189)
T ss_dssp ETTEEEEEEEEECCCSHHHH
T ss_pred ECCEEEEEEEEECCCchhhh
Confidence 45667899999999988776
No 325
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=71.58 E-value=0.78 Score=32.60 Aligned_cols=33 Identities=18% Similarity=0.528 Sum_probs=23.1
Q ss_pred eEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
.+.+.+||++|+++++....-++.+..++.-.+
T Consensus 59 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 91 (181)
T 1fzq_A 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI 91 (181)
T ss_dssp TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 467899999999988776655555555554433
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=71.40 E-value=1 Score=30.89 Aligned_cols=35 Identities=40% Similarity=0.790 Sum_probs=21.7
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..++..+.+.+||++|++++....+.++.+..++.
T Consensus 46 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 46 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp EETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred EECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 35667788999999999887766555544444444
No 327
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=71.20 E-value=0.51 Score=40.81 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=33.1
Q ss_pred ceeeeEEEecCceEEE--EEEeeecCccc-ccc----ccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518 25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAH----SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE 86 (208)
Q Consensus 25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 86 (208)
.....|.++|..++|| +++++.+.... ... ..|.|+-.+...+. ......+.++||+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccc-cCCCceEEEecCCCcCc
Confidence 4568899999999999 45655554421 111 22222211111110 12234588999999643
No 328
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=71.15 E-value=0.6 Score=33.77 Aligned_cols=21 Identities=29% Similarity=0.416 Sum_probs=16.8
Q ss_pred cCCceEEEEEeeccCccccce
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDA 26 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~ 26 (208)
.++..+.|.+||++|++++..
T Consensus 67 ~~~~~~~l~i~Dt~g~~~~~~ 87 (195)
T 3cbq_A 67 VDKEEVTLVVYDIWEQGDAGG 87 (195)
T ss_dssp ETTEEEEEEEECCCCCSGGGH
T ss_pred ECCEEEEEEEEecCCCccchh
Confidence 467788899999999987654
No 329
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=70.90 E-value=2.1 Score=33.29 Aligned_cols=35 Identities=34% Similarity=0.690 Sum_probs=24.7
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..++..+.+.+||++|++++....+.++-+..++.
T Consensus 197 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 197 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp EETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred EECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 35677888999999999988766555554444443
No 330
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=70.87 E-value=0.99 Score=32.04 Aligned_cols=33 Identities=24% Similarity=0.664 Sum_probs=20.2
Q ss_pred EEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 11 ~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..+.+||++|++++....+-++-+..++.-.+.
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 92 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 92 (187)
T ss_dssp EEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 789999999999888776666655555544443
No 331
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=70.18 E-value=2.2 Score=31.02 Aligned_cols=36 Identities=36% Similarity=0.792 Sum_probs=28.3
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
+..+.+.+||++|++++......++.+..++...+.
T Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (218)
T 4djt_A 58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFD 93 (218)
T ss_dssp SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEE
T ss_pred CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEe
Confidence 344889999999999999888877777777665444
No 332
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=69.47 E-value=1.3 Score=31.65 Aligned_cols=37 Identities=24% Similarity=0.498 Sum_probs=26.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF 42 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~ 42 (208)
.++..+.+.+||++|++++....+.++-+..++...+
T Consensus 51 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 87 (199)
T 2gf0_A 51 CDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVF 87 (199)
T ss_dssp ETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEE
T ss_pred ECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEE
Confidence 3556778999999999988876666666655554433
No 333
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=69.11 E-value=12 Score=28.70 Aligned_cols=83 Identities=11% Similarity=0.099 Sum_probs=47.1
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHh---hc-CCCCE-EEEEeCCCCCCCCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN---EC-GEIPT-VLVQNKIDLLDQSVV 147 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~-~~~pi-ivvgnK~Dl~~~~~v 147 (208)
.+.+.|.||++.... .....+..+|.++++...+ ..+...+...+..+.+ .. ++.++ -+|.|+.|... ..
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~--~~ 228 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS--AT 228 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC--HH
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc--HH
Confidence 356789999875432 2233445699999999875 3455555444444433 22 25664 47889998532 11
Q ss_pred CHHHHHHHHHHhC
Q psy2518 148 APEEADLLSRALG 160 (208)
Q Consensus 148 ~~~~~~~~~~~~~ 160 (208)
..+..+++.+.++
T Consensus 229 ~~~~~~~~~~~~~ 241 (298)
T 2oze_A 229 IKSNLEELYKQHK 241 (298)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 2333444555544
No 334
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=69.03 E-value=1.1 Score=31.70 Aligned_cols=31 Identities=19% Similarity=0.573 Sum_probs=21.4
Q ss_pred eEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
...+.+||++|+++++...+-++-+..++.-
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4678999999998887766555544444433
No 335
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=68.87 E-value=1.3 Score=30.50 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=24.2
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
.++....+.+||++|++++....+.++-+..++..
T Consensus 46 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 46 CDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp ETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred ECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 34566789999999998887665555555444443
No 336
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=68.72 E-value=1.3 Score=31.02 Aligned_cols=35 Identities=40% Similarity=0.790 Sum_probs=24.5
Q ss_pred ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..++..+.+.+||++|++++....+.++-+..++.
T Consensus 60 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 60 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp EETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred EECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 34566788999999999888766555554444444
No 337
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=68.64 E-value=1.4 Score=31.27 Aligned_cols=28 Identities=46% Similarity=0.988 Sum_probs=19.9
Q ss_pred EEEEEeeccCccccceeeeEEEecCceE
Q psy2518 11 VRLMLWDTAGQEEFDAITKAYYRGAQAC 38 (208)
Q Consensus 11 ~~~~~~d~~g~~~~~~~~ki~~vG~s~~ 38 (208)
..+.+||++|++++.....-++-+..++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 120 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCA 120 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEE
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 8899999999988876555444444433
No 338
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=68.11 E-value=1.1 Score=30.95 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=14.1
Q ss_pred ccCCceEEEEEeeccCccccce
Q psy2518 5 ICEGEEVRLMLWDTAGQEEFDA 26 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~~~~ 26 (208)
..++..+.+.+||++|++++..
T Consensus 45 ~~~~~~~~~~i~D~~g~~~~~~ 66 (169)
T 3q85_A 45 MVDKEEVTLIVYDIWEQGDAGG 66 (169)
T ss_dssp EETTEEEEEEEECCCCC-----
T ss_pred EECCeEEEEEEEECCCccccch
Confidence 3567788999999999987654
No 339
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=67.97 E-value=37 Score=25.71 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=51.0
Q ss_pred EEEEEEEeCCChhhhcchh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCC-EEEEEeCCCCCCCCCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAIT-KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIP-TVLVQNKIDLLDQSVVA 148 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p-iivvgnK~Dl~~~~~v~ 148 (208)
.+.+.|.||++......+. ......+|.++++...+ ..+...+...+..+.+... +.+ .-+|.|+.+.. ..
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~ 192 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----RE 192 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----TH
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hH
Confidence 4568899998743221111 22235799999998865 5566666555555544322 444 35678998631 22
Q ss_pred HHHHHHHHHHhCCeEE
Q psy2518 149 PEEADLLSRALGCRLM 164 (208)
Q Consensus 149 ~~~~~~~~~~~~~~~~ 164 (208)
.+..+.+.+.++.+++
T Consensus 193 ~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 193 DELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHcCcccc
Confidence 4455566667776654
No 340
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=67.60 E-value=2.1 Score=30.40 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=19.8
Q ss_pred EEEEEeeccCccccceeeeEEEecCceE
Q psy2518 11 VRLMLWDTAGQEEFDAITKAYYRGAQAC 38 (208)
Q Consensus 11 ~~~~~~d~~g~~~~~~~~ki~~vG~s~~ 38 (208)
..+.+||++|+++++...+-++-+..++
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 6789999999988876655444444443
No 341
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=67.26 E-value=30 Score=27.53 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=29.1
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHH
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH 117 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 117 (208)
.+.+.|.||+..- .......+..+|.++++...+ ..++..+.
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~~ 194 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAFG 194 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHHH
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHHH
Confidence 5668999998643 234455667799999999875 55554443
No 342
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=66.72 E-value=3 Score=29.91 Aligned_cols=34 Identities=47% Similarity=0.957 Sum_probs=25.4
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.+|..+.+.+||++|+++++.....++-+..++.
T Consensus 49 ~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 49 VDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp ETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred ECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 5677788999999999998877666665554443
No 343
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=66.66 E-value=1 Score=32.29 Aligned_cols=32 Identities=19% Similarity=0.648 Sum_probs=17.8
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
..+.+.+||++|+++++...+-++-+..++.-
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 34789999999998877665555555554443
No 344
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=66.12 E-value=2.1 Score=30.18 Aligned_cols=29 Identities=45% Similarity=0.869 Sum_probs=20.1
Q ss_pred eEEEEEeeccCccccceeeeEEEecCceE
Q psy2518 10 EVRLMLWDTAGQEEFDAITKAYYRGAQAC 38 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~ 38 (208)
.+.+.+||++|++++.....-++-+..++
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 97 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGF 97 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEE
Confidence 78999999999988776544444333333
No 345
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=65.99 E-value=1.8 Score=29.51 Aligned_cols=34 Identities=38% Similarity=0.630 Sum_probs=22.5
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.++..+.+.+||++|++++......++.+..++.
T Consensus 46 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp ETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred ECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 4566778899999998877665554444444433
No 346
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=65.64 E-value=10 Score=28.99 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=41.4
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHH---HH-------------H---HHHHhh--cCC-C
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH---SW-------------K---MKVENE--CGE-I 130 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~---~~-------------~---~~~~~~--~~~-~ 130 (208)
.+.+.|.|+++.. .......+..+|.++++...+. .+...+. .+ + ..+... .+. .
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 179 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF-VDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAM 179 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH-HHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc-cHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCccc
Confidence 3567899998864 3445667789999999998763 2322211 11 2 222222 335 6
Q ss_pred CEEEEEeCCCC
Q psy2518 131 PTVLVQNKIDL 141 (208)
Q Consensus 131 piivvgnK~Dl 141 (208)
++.+|.|++|.
T Consensus 180 ~~~vV~N~~~~ 190 (286)
T 2xj4_A 180 DWVVLRNRLAT 190 (286)
T ss_dssp EEEEEEECCTT
T ss_pred cEEEEEeeecC
Confidence 77899999985
No 347
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=64.22 E-value=1.1 Score=32.00 Aligned_cols=32 Identities=38% Similarity=0.698 Sum_probs=22.8
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
....+.+||++|++++......++.+..++..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 35678999999999887766655555555443
No 348
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=63.62 E-value=3.9 Score=28.38 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=15.4
Q ss_pred cCCceEEEEEeeccCccc
Q psy2518 6 CEGEEVRLMLWDTAGQEE 23 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~ 23 (208)
.++..+.+.+||++|+++
T Consensus 49 ~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 49 VDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp ETTEEEEEEEEECSSSCC
T ss_pred ECCEEEEEEEEECCCCch
Confidence 466788999999999986
No 349
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=63.40 E-value=1.4 Score=32.00 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.5
Q ss_pred eEEEEEeeccCccccce
Q psy2518 10 EVRLMLWDTAGQEEFDA 26 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~~~ 26 (208)
.+.+.+||++|+++|..
T Consensus 53 ~~~~~i~Dt~G~~~~~~ 69 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRF 69 (214)
T ss_dssp CCEEEEEECCCCHHHHH
T ss_pred ccEEEEEECCCChhHHH
Confidence 57899999999987764
No 350
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=62.84 E-value=3.8 Score=28.38 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=20.3
Q ss_pred EEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 11 VRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 11 ~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
..+.+||++|+++|.....-.+-+..++.
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 35779999999998877665544444443
No 351
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=62.69 E-value=0.98 Score=32.23 Aligned_cols=35 Identities=49% Similarity=0.917 Sum_probs=25.3
Q ss_pred cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
.++..+.+.+||++|++.+......++-+..++..
T Consensus 67 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 67 RHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp ETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred ECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 45667889999999998888776665555555443
No 352
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=60.71 E-value=15 Score=28.10 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=40.8
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEE-EEEeCCCC
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDL 141 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pii-vvgnK~Dl 141 (208)
+.+.|.||++..... ........+|.+++|..... .+...+...+..+.+. +.+++ +|.|+.|.
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~--~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT--GAKLLGVVLNRMPK 256 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT--TCEEEEEEEEEECC
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC--CCCEEEEEEeCCcC
Confidence 557899998753321 12234457899999998763 4555555555555543 45555 78899986
No 353
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=59.62 E-value=14 Score=29.92 Aligned_cols=50 Identities=30% Similarity=0.416 Sum_probs=35.4
Q ss_pred CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 129 ~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 185 (208)
..|.+++.||.|.. ..++.+.+.+. -.++.+|+..+.|++++...+.+.+
T Consensus 249 ~~p~i~v~nKid~~-----~~eele~l~~~--~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 249 YMPAIYVLNKIDSL-----SIEELELLYRI--PNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EECEEEEEECGGGS-----CHHHHHHHTTS--TTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccceEEEEeccccc-----CHHHHHHHhcc--cchhhhhhhhcccchhHHHHHHHHc
Confidence 57999999999962 34444433322 2578999999999988877665543
No 354
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=58.76 E-value=1.9 Score=31.37 Aligned_cols=31 Identities=48% Similarity=0.920 Sum_probs=22.6
Q ss_pred eEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
.+.+.+||++|+++|....+.++-+..++..
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iil 113 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLL 113 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEE
Confidence 6789999999999887766555555554443
No 355
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=58.47 E-value=3 Score=28.78 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=11.5
Q ss_pred ccCCceEEEEEeeccCccc
Q psy2518 5 ICEGEEVRLMLWDTAGQEE 23 (208)
Q Consensus 5 ~~~~~~~~~~~~d~~g~~~ 23 (208)
..++..+.+.+||++|++.
T Consensus 46 ~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 46 TVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EETTEEEEEEEECCC----
T ss_pred EECCEEEEEEEEecCCCCc
Confidence 3456677888999999876
No 356
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=57.79 E-value=2.1 Score=29.98 Aligned_cols=22 Identities=32% Similarity=0.776 Sum_probs=12.5
Q ss_pred EEEEEeeccCccccceeeeEEE
Q psy2518 11 VRLMLWDTAGQEEFDAITKAYY 32 (208)
Q Consensus 11 ~~~~~~d~~g~~~~~~~~ki~~ 32 (208)
..+.+||++|++++....+-++
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~ 83 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYY 83 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTT
T ss_pred EEEEEEECCCCHhHHHHHHHHh
Confidence 6788999999987766544433
No 357
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=57.78 E-value=1.7 Score=34.04 Aligned_cols=34 Identities=26% Similarity=0.528 Sum_probs=22.1
Q ss_pred eEEEEEeeccCcccc-----ceeeeEEEecCceEEEEEE
Q psy2518 10 EVRLMLWDTAGQEEF-----DAITKAYYRGAQACVITFS 43 (208)
Q Consensus 10 ~~~~~~~d~~g~~~~-----~~~~ki~~vG~s~~gk~~~ 43 (208)
.+.+.+||++|+++| ......++.+..++.-.+.
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D 89 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFD 89 (307)
T ss_dssp TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEE
T ss_pred ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEE
Confidence 578999999999987 4444444445555444333
No 358
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=56.24 E-value=1.6 Score=34.63 Aligned_cols=36 Identities=17% Similarity=0.564 Sum_probs=20.1
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
...+.+.+|||+|++.|......++-+..++...+.
T Consensus 206 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 206 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp ETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 345789999999999888776665555555444333
No 359
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=53.90 E-value=3.5 Score=34.48 Aligned_cols=35 Identities=26% Similarity=0.701 Sum_probs=27.0
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 43 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~ 43 (208)
..+.+.+|||+|+++|+....-++-+..++...+.
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 34689999999999999887777766666655444
No 360
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=52.61 E-value=2.9 Score=30.76 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=18.7
Q ss_pred cCCceEEEEEeeccCccc-cceeeeEEEecCceEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEE-FDAITKAYYRGAQACVI 40 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~-~~~~~ki~~vG~s~~gk 40 (208)
+++..+.+.+||++|++. +......++.+..++..
T Consensus 82 ~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~il 117 (211)
T 2g3y_A 82 VDGESATIILLDMWENKGENEWLHDHCMQVGDAYLI 117 (211)
T ss_dssp ETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEE
T ss_pred ECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEE
Confidence 455666777777777765 33333333444444433
No 361
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=51.03 E-value=1.5 Score=36.58 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=36.3
Q ss_pred eeeeEEEecCceEEE--EEEeeec------------------Ccccc---ccccccccceeeEEEEE---CCeEEEEEEE
Q psy2518 26 AITKAYYRGAQACVI--TFSTIDR------------------DSFEA---AHSWKMKVSIKRTIKEC---EGEEVRLMLW 79 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk--~~~~~~~------------------~~f~~---~~~~t~~~~~~~~~~~~---~~~~~~l~i~ 79 (208)
...-|.++|..++|| ++++++. ..|.. ....|.|+-.....+.. ++....+-+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 456688899999999 3444432 23432 23344554333322211 5667899999
Q ss_pred eCCChh
Q psy2518 80 DTAGQE 85 (208)
Q Consensus 80 Dt~g~~ 85 (208)
||+|..
T Consensus 146 DTeG~~ 151 (447)
T 3q5d_A 146 DTQGTF 151 (447)
T ss_dssp EEECCC
T ss_pred cCCccc
Confidence 999953
No 362
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=48.92 E-value=2.9 Score=29.95 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=10.8
Q ss_pred cCCceEEEEEeeccCccc
Q psy2518 6 CEGEEVRLMLWDTAGQEE 23 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~ 23 (208)
+++..+.+.+||++|++.
T Consensus 51 ~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 51 VDGESATIILLDMWENKG 68 (192)
T ss_dssp ETTEEEEEEEECCCCC--
T ss_pred ECCeEEEEEEEEeccCcc
Confidence 455666777777777653
No 363
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=48.89 E-value=7.3 Score=27.66 Aligned_cols=27 Identities=48% Similarity=1.004 Sum_probs=19.2
Q ss_pred cCCceEEEEEeeccCccccceeeeEEE
Q psy2518 6 CEGEEVRLMLWDTAGQEEFDAITKAYY 32 (208)
Q Consensus 6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~ 32 (208)
.++..+.+.+||++|++++......++
T Consensus 73 ~~g~~~~~~i~Dt~g~~~~~~~~~~~~ 99 (191)
T 1oix_A 73 VDGKTIKAQIWDTAGLERYRAITSAYY 99 (191)
T ss_dssp ETTEEEEEEEEEECSCCSSSCCCHHHH
T ss_pred ECCEEEEEEEEECCCCcchhhhhHHHh
Confidence 456677888899999887766544433
No 364
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=46.71 E-value=81 Score=24.10 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=41.5
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD 143 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~ 143 (208)
+.+.|.||+....... .....+.+|++++|..... .+...+...+..+.+.. ...+-+|.|+.|...
T Consensus 202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g-~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG-IPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT-CCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC-CCEEEEEEcCccccc
Confidence 4578999987543211 2344567999999998764 34555555555554432 234456789998643
No 365
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=45.02 E-value=47 Score=26.69 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=36.5
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh------hHHHHHHHHHHHHhhcCCCC---EEEEEeCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD------SFEAAHSWKMKVENECGEIP---TVLVQNKID 140 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~p---iivvgnK~D 140 (208)
.+.+.|.||+..-. ......+..+|.++++...+..+ .+..+...+..+.+...+.+ ++.+.|+.+
T Consensus 247 ~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 247 DYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp GCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred cCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 45688999987543 23445566899999999876332 11222333333433322333 455778877
No 366
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=44.88 E-value=46 Score=26.21 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=51.0
Q ss_pred EEEEeCCChhhhcc-----hhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH
Q psy2518 76 LMLWDTAGQEEFDA-----ITK-AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP 149 (208)
Q Consensus 76 l~i~Dt~g~~~~~~-----~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~ 149 (208)
+.+.||+|...... +.. ...-..|-.+++.|...... +......+.+. ...-.++.||.|-.. .-
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~~~~~~~~~--~~it~iilTKlD~~a----~~ 284 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVEQARQFNEA--VKIDGIILTKLDADA----RG 284 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHH--SCCCEEEEECGGGCS----CC
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHHHHHHHHHh--cCCCEEEEeCcCCcc----ch
Confidence 45799998633211 111 01124788899999765532 22223333322 123467789999522 22
Q ss_pred HHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518 150 EEADLLSRALGCRLMRTSVKEDINVNS 176 (208)
Q Consensus 150 ~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 176 (208)
..+...+...+.++..++ +|+++++
T Consensus 285 G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 285 GAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp HHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred hHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 345567777888888777 6666554
No 367
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=42.96 E-value=7.8 Score=29.19 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=20.5
Q ss_pred cCCceEEEEEee-----------------------ccCccccceeeeEEEecCceEE
Q psy2518 6 CEGEEVRLMLWD-----------------------TAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 6 ~~~~~~~~~~~d-----------------------~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.++..+.+.+|| ++|+++|....+.++......|
T Consensus 90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~ 146 (255)
T 3c5h_A 90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLG 146 (255)
T ss_dssp ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTT
T ss_pred cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhcccccc
Confidence 356789999999 7788877777777666444444
No 368
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=42.06 E-value=50 Score=25.43 Aligned_cols=65 Identities=9% Similarity=-0.008 Sum_probs=38.1
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCC
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLL 142 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~ 142 (208)
+.+.|.||++...... .......+|.+++|..... .+...+...+..+.+. +.+ .-+|.|+.|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~-~~~~~~~~~~~~l~~~--~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGL-NTAKEVSLSMQRLEQA--GVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTT-SCTTHHHHHHHHHHHT--TCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCC-ChHHHHHHHHHHHHhC--CCCeEEEEEeCCccC
Confidence 4578999987543211 2234467999999988653 3444444444445443 233 33667999863
No 369
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=40.31 E-value=52 Score=27.74 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe--cCCCCCHHHHHHHHHHHH
Q psy2518 113 FEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS--VKEDINVNSIFRYLTTKC 185 (208)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S--a~~~~~i~~~f~~i~~~~ 185 (208)
+.++.+.++.++++ ..|++|..|+..... .-..+..+++|++.|+.+..+. ++-|+|-.++-+.+++.+
T Consensus 346 ~~NL~kHIen~~~f--GvpvVVaiN~F~tDT--~aEi~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 346 FKNLRVHVENLRKF--NLPVVVALNRFSTDT--EKEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEEEECCTTCC--HHHHHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc--CCCeEEEEeCCCCCC--HHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHh
Confidence 34555556666554 799999999976422 1223456778888998765443 455667666666655543
No 370
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=38.13 E-value=35 Score=24.63 Aligned_cols=72 Identities=13% Similarity=-0.035 Sum_probs=43.2
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHh----hcCCCCEEEEEeCC-CCCCCCCCCHHHHHHHHHHhCCeEE
Q psy2518 91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN----ECGEIPTVLVQNKI-DLLDQSVVAPEEADLLSRALGCRLM 164 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~----~~~~~piivvgnK~-Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (208)
....+..||++|++...-+..--..++.|++.+.. ...++|+.++++-- .... .......+......|+..+
T Consensus 67 ~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g~--~~a~~~Lr~il~~lg~~~v 143 (199)
T 4hs4_A 67 MAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGG--ARAQNHLRQSLVFLDAYVL 143 (199)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSCS--HHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCccc--HHHHHHHHHHHHHcCCEEc
Confidence 34457899999999887765444445666666654 22278898888742 2211 1123445555666676443
No 371
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=38.01 E-value=5.3 Score=28.88 Aligned_cols=12 Identities=8% Similarity=-0.045 Sum_probs=11.1
Q ss_pred eEEEecCceEEE
Q psy2518 29 KAYYRGAQACVI 40 (208)
Q Consensus 29 ki~~vG~s~~gk 40 (208)
.|+++|+||+||
T Consensus 3 pIVi~GPSG~GK 14 (186)
T 1ex7_A 3 PIVISGPSGTGK 14 (186)
T ss_dssp CEEEECCTTSSH
T ss_pred EEEEECCCCCCH
Confidence 489999999999
No 372
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=37.56 E-value=1.7e+02 Score=23.95 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=44.9
Q ss_pred EEEEEEEeCCChhhhcc-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCC
Q psy2518 73 EVRLMLWDTAGQEEFDA-ITK-----AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQS 145 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~ 145 (208)
.+.+.|.||+|...... +.. .....++.+++|.|.......-. ....+.. ..+ .-+|.||.|... +
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~---~l~i~gvVlnK~D~~~-~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE---ALPLTGVVLTKVDGDA-R 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH---HSCCCCEEEECTTSSS-C
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc---cCCCeEEEEecCCCCc-c
Confidence 35688999999643211 111 12447899999999875433221 1222222 233 346789999633 2
Q ss_pred CCCHHHHHHHHHHhCCeEE
Q psy2518 146 VVAPEEADLLSRALGCRLM 164 (208)
Q Consensus 146 ~v~~~~~~~~~~~~~~~~~ 164 (208)
. ..+.......+.++.
T Consensus 256 ~---g~~l~i~~~~~~Pi~ 271 (433)
T 2xxa_A 256 G---GAALSIRHITGKPIK 271 (433)
T ss_dssp C---THHHHHHHHHCCCEE
T ss_pred H---HHHHHHHHHHCCCeE
Confidence 1 234455666666543
No 373
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=37.05 E-value=74 Score=22.28 Aligned_cols=46 Identities=9% Similarity=-0.204 Sum_probs=32.8
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHh----hcCCCCEEEEEeC
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN----ECGEIPTVLVQNK 138 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~----~~~~~piivvgnK 138 (208)
..+..+|++++.+..-...-...+..|++.+.. ...+.|+.++++-
T Consensus 48 ~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~ 97 (188)
T 2ark_A 48 EDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSS 97 (188)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEE
T ss_pred HHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEEC
Confidence 345679999999988765555567778877654 2236788888874
No 374
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=35.11 E-value=14 Score=26.14 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=11.0
Q ss_pred EEEecCceEEEE
Q psy2518 30 AYYRGAQACVIT 41 (208)
Q Consensus 30 i~~vG~s~~gk~ 41 (208)
+++.|+.|+||+
T Consensus 41 ~ll~G~~G~GKT 52 (226)
T 2chg_A 41 LLFSGPPGTGKT 52 (226)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 899999999993
No 375
>2idc_A Anti-silencing protein 1 and histone H3 chimera; IG-like fold, ASF1, chaperone, chromatin, repli chaperone complex; 2.20A {Saccharomyces cerevisiae}
Probab=34.85 E-value=1.2e+02 Score=21.60 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=44.4
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEE-EEEeeecCcccccccc---ccccceeeEEEEECCeE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI-TFSTIDRDSFEAAHSW---KMKVSIKRTIKECEGEE 73 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~---t~~~~~~~~~~~~~~~~ 73 (208)
++-..++..-+.|.+++|+..+--+.+|+-.+|+ .|. +..+.-+....| -+|+....-+..+.++.
T Consensus 38 ~dleWkliYVgSa~s~~~DQ~Ldsv~VGPi~~G~~kFv-~~adpPd~~~IP~~dilGvTviLlt~sY~~qE 107 (179)
T 2idc_A 38 HDLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFV-FSADPPSAELIPASELVSVTVILLSCSYDGRE 107 (179)
T ss_dssp SCEEEEEEECSCTTCGGGCEEEEEEEECSCCSEEEEEE-EEECCCCGGGSCTTTTTSCEEEEEEEEETTEE
T ss_pred CCcEEEEEEEcCCCcccCCeEeeEEEECCccceeEEEE-EEcCCCCcccCChhhcceeEEEEEEEEECCeE
Confidence 3456678888899999999999999999999999 333 223332222212 24666666666666654
No 376
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=33.96 E-value=6.3 Score=32.88 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=39.4
Q ss_pred eeeeEEEecCceEEEE--EE---eee---------------cCcccc---ccccccccceeeEEEEE---CCeEEEEEEE
Q psy2518 26 AITKAYYRGAQACVIT--FS---TID---------------RDSFEA---AHSWKMKVSIKRTIKEC---EGEEVRLMLW 79 (208)
Q Consensus 26 ~~~ki~~vG~s~~gk~--~~---~~~---------------~~~f~~---~~~~t~~~~~~~~~~~~---~~~~~~l~i~ 79 (208)
.+.=|.++|..++||+ ++ ++. ...|.- ..+-|.|+-+....+.+ +|..+.+-+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 4566778999999993 33 222 234442 34457777666554433 6788999999
Q ss_pred eCCChh
Q psy2518 80 DTAGQE 85 (208)
Q Consensus 80 Dt~g~~ 85 (208)
||.|..
T Consensus 146 DTEG~~ 151 (457)
T 4ido_A 146 DTQGTF 151 (457)
T ss_dssp EECCBT
T ss_pred eccCCC
Confidence 999953
No 377
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=33.62 E-value=1.9e+02 Score=23.59 Aligned_cols=85 Identities=19% Similarity=0.129 Sum_probs=46.4
Q ss_pred EEEEEEeCCChhhhcc-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC
Q psy2518 74 VRLMLWDTAGQEEFDA-ITK-----AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV 147 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v 147 (208)
+.+.|.||+|...... +.. .....++.+++|.|....... ......+... -...-+|.||.|-..
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~a---v~~a~~f~~~--l~i~GVIlTKlD~~~---- 251 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEA---LSVARAFDEK--VGVTGLVLTKLDGDA---- 251 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHH---HHHHHHHHHH--TCCCEEEEESGGGCS----
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHH---HHHHHHHHhc--CCceEEEEeCcCCcc----
Confidence 4578999998643211 111 112358889999998643222 1122222221 122456789999532
Q ss_pred CHHHHHHHHHHhCCeEEEEe
Q psy2518 148 APEEADLLSRALGCRLMRTS 167 (208)
Q Consensus 148 ~~~~~~~~~~~~~~~~~e~S 167 (208)
....+...+...+.++..+.
T Consensus 252 ~~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 252 RGGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp SCHHHHHHHHHHCCCEEEEE
T ss_pred cHHHHHHHHHHHCCCEEEEe
Confidence 12344556677788876665
No 378
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=33.28 E-value=1.2e+02 Score=21.19 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=45.5
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEE-EEEeeecCcccccccc----ccccceeeEEEEECCeE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI-TFSTIDRDSFEAAHSW----KMKVSIKRTIKECEGEE 73 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~----t~~~~~~~~~~~~~~~~ 73 (208)
++-..++..-+.|.+++|+..+--+.+|+-.+|+ .|. +..+.-+...-| -+|+....-+..+.++.
T Consensus 36 ~dlewkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv-~~adpPd~~~IP~~~dilGvTvillt~sY~~qE 106 (161)
T 2cu9_A 36 SDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFV-FEADPPNIDLLPQLSDVLGVTVILLSCAYEDNE 106 (161)
T ss_dssp SCEEEEEEEESSTTSCCCEEEEEEEEECSCCSEEEEEE-EEECCCCGGGSSCGGGGSEEEEEEEEEEETTEE
T ss_pred CCeEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEE-EEcCCCChhHCCCcccceeeEEEEEEEEECCeE
Confidence 4556778888999999999999999999999999 333 223333333223 35666666666676654
No 379
>1roc_A Anti-silencing protein 1; beta-sandwich, replication, chaperone; 1.50A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 2ygv_A
Probab=32.92 E-value=1.2e+02 Score=21.05 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=44.5
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEE-EEEeeecCccccccccc---cccceeeEEEEECCeE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI-TFSTIDRDSFEAAHSWK---MKVSIKRTIKECEGEE 73 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t---~~~~~~~~~~~~~~~~ 73 (208)
++-..++..-+.|.+++|+..+--+.+|+-.+|+ .|. +..+.-+....|. +|+...--+..+.++.
T Consensus 37 ~dlewkliYVgSa~s~~~DQ~Ld~v~vGPi~~G~~kFv-~~adpPd~~~Ip~~dilGvTvillt~sY~~qE 106 (155)
T 1roc_A 37 HDLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFV-FSADPPSAELIPASELVSVTVILLSCSYDGRE 106 (155)
T ss_dssp SCEEEEEEECCCTTSSCTTEEEEEEEECSCCSEEEEEE-EEECCCCGGGCCTHHHHSCEEEEEEEEETTEE
T ss_pred CCcEEEEEEEeCCCcccCceEeeEEEeccccceeEEEE-EEcCCCCcccCChhhcceeEEEEEEEEECCcE
Confidence 3456677888899999999999999999999999 332 2233322222121 4666666666776654
No 380
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=31.90 E-value=1.8e+02 Score=22.54 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=46.6
Q ss_pred EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEE-EEEeCCCCCCCCCCCHH
Q psy2518 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTV-LVQNKIDLLDQSVVAPE 150 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~pii-vvgnK~Dl~~~~~v~~~ 150 (208)
+.+.+.|+++......+ ...+..||.+|++...+ ..+...+.+.+..+..... +.++. +|.|+++. ..
T Consensus 164 ~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e-~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-------~~ 234 (314)
T 3fwy_A 164 TDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-------TD 234 (314)
T ss_dssp CSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-------CH
T ss_pred CceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc-HHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc-------hh
Confidence 34556676654322111 23456789988887654 5566666666666654433 33332 56676653 23
Q ss_pred HHHHHHHHhCCeEE
Q psy2518 151 EADLLSRALGCRLM 164 (208)
Q Consensus 151 ~~~~~~~~~~~~~~ 164 (208)
+.++++++++.+++
T Consensus 235 ~v~~~a~~~~~~~l 248 (314)
T 3fwy_A 235 EVDRFCKETNFRRL 248 (314)
T ss_dssp HHHHHHHHHTCCEE
T ss_pred HHHHHHHHhCCeEE
Confidence 45667777777654
No 381
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=31.80 E-value=24 Score=29.27 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=8.8
Q ss_pred EEEEEeeccCccccceee
Q psy2518 11 VRLMLWDTAGQEEFDAIT 28 (208)
Q Consensus 11 ~~~~~~d~~g~~~~~~~~ 28 (208)
..+.+|||+|+++|....
T Consensus 121 ~~~~iiDtPGh~~f~~~~ 138 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNM 138 (467)
T ss_dssp EEEEECCCCC--------
T ss_pred eEEEEEECCCcHHHHHHH
Confidence 568899999998876544
No 382
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=31.77 E-value=12 Score=31.65 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=23.7
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
+..+.+.+||++|++.|......++-+...+.
T Consensus 95 ~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii 126 (535)
T 3dpu_A 95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYM 126 (535)
T ss_dssp TTTCEEEEECCCSCCTTTTTCHHHHHSSEEEE
T ss_pred CceEEEEEEECCcHHHHHHHHHHHccCCcEEE
Confidence 44688999999999998887665555544443
No 383
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=31.15 E-value=44 Score=21.78 Aligned_cols=68 Identities=6% Similarity=-0.048 Sum_probs=39.8
Q ss_pred hhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE
Q psy2518 94 YYRGAQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM 164 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (208)
.+..+|+++++.......-... +..+++.+.....+.|+.++++--.- -.-............|+.++
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPKLKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGGCSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhhcCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc
Confidence 3568999999987753322222 55566665444447888888874221 11234455556666787544
No 384
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=30.59 E-value=17 Score=32.85 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=24.6
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
++....+.+|||+|+.+|.....-++.+..++..
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ail 127 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALV 127 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEE
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEE
Confidence 4557899999999999887766555555555543
No 385
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=30.26 E-value=1.4e+02 Score=20.95 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=35.1
Q ss_pred EEEEeCCCh-hhhcchhHhh-hcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEE-EeCC
Q psy2518 76 LMLWDTAGQ-EEFDAITKAY-YRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLV-QNKI 139 (208)
Q Consensus 76 l~i~Dt~g~-~~~~~~~~~~-~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivv-gnK~ 139 (208)
+.+-|+-+. ..+..+.... -.++|.++++-|+.+.. ..+....++..+.+. ..|+++| ||.=
T Consensus 9 ~~iSD~H~~~~~~~~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~--~~pv~~v~GNHD 74 (228)
T 1uf3_A 9 LATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEA--HLPTAYVPGPQD 74 (228)
T ss_dssp EEEECCTTCHHHHHHHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGG--CSCEEEECCTTS
T ss_pred EEEeeccCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc--CCcEEEECCCCC
Confidence 456677553 2222222211 12799999999998765 444444555555443 4566544 7764
No 386
>2hue_A Anti-silencing protein 1; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 1wg3_A
Probab=30.22 E-value=1.5e+02 Score=21.11 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=44.6
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEE-EEEeeecCcccccc-ccc--cccceeeEEEEECCeE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI-TFSTIDRDSFEAAH-SWK--MKVSIKRTIKECEGEE 73 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~-~~t--~~~~~~~~~~~~~~~~ 73 (208)
++-..++..-+.|.+++|+..+--+.+|+-.+|+ .|. +..+.-+... +.. +|+....-+..+.++.
T Consensus 42 ~dleWkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv-~~adpPd~~~IP~~dilGvTviLlt~sY~~qE 111 (175)
T 2hue_A 42 HDLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFV-FSADPPSAELIPASELVSVTVILLSCSYDGRE 111 (175)
T ss_dssp SCEEEEEEEESCTTCGGGEEEEEEEEECSCCSEEEEEE-EEECCCCGGGSCHHHHTSCEEEEEEEEETTEE
T ss_pred CCcEEEEEEEcCCCCccCCeEeeEEEECCccceeEEEE-EEcCCCChhhCChhhccceEEEEEEEEECCeE
Confidence 3456778888999999999999999999999999 333 2223322222 122 4666666666676654
No 387
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=30.07 E-value=8.6 Score=27.14 Aligned_cols=12 Identities=17% Similarity=0.019 Sum_probs=11.0
Q ss_pred eEEEecCceEEE
Q psy2518 29 KAYYRGAQACVI 40 (208)
Q Consensus 29 ki~~vG~s~~gk 40 (208)
.++++|++|+||
T Consensus 7 ~i~i~GpsGsGK 18 (180)
T 1kgd_A 7 TLVLLGAHGVGR 18 (180)
T ss_dssp EEEEECCTTSSH
T ss_pred EEEEECCCCCCH
Confidence 578999999999
No 388
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=29.61 E-value=47 Score=23.30 Aligned_cols=70 Identities=9% Similarity=-0.009 Sum_probs=41.9
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM 164 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (208)
...+..+|+++++...-+..--..++.|++.+.....+.|++++.+ -.... .......+.+....|+..+
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~l~gK~~~~~~~-G~~~~--~~~~~~l~~~l~~~G~~~~ 148 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPALVVSY-GGHGG--SKCNDQLQEVLHGLKMNVI 148 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTTTTTCEEEEEEE-ETTTT--HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHhhcCCCEEEEEEe-CCcch--hhHHHHHHHHHHHCCCEEc
Confidence 3457899999999988775444456677776643333677777765 22211 1122344455666777544
No 389
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=29.31 E-value=51 Score=22.80 Aligned_cols=72 Identities=3% Similarity=-0.090 Sum_probs=40.9
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHh------------hcCCCCEEEEEeCCCCCC-CCCCCHHHHHHHHHHh
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN------------ECGEIPTVLVQNKIDLLD-QSVVAPEEADLLSRAL 159 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~------------~~~~~piivvgnK~Dl~~-~~~v~~~~~~~~~~~~ 159 (208)
..+..+|++++++.+-...--..++.|++.+.. ...+.+++++++--.-.. .-.......+.++...
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~ 146 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFM 146 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHc
Confidence 457899999999988765444455666665532 122678888877322100 0001123444556667
Q ss_pred CCeEE
Q psy2518 160 GCRLM 164 (208)
Q Consensus 160 ~~~~~ 164 (208)
|+.++
T Consensus 147 G~~~~ 151 (184)
T 1rli_A 147 GMSFK 151 (184)
T ss_dssp TCEEE
T ss_pred CCccc
Confidence 87544
No 390
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=28.62 E-value=72 Score=22.76 Aligned_cols=72 Identities=10% Similarity=0.034 Sum_probs=42.0
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE----CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM 164 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~----~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (208)
...+..||++|++...-+..--..++.|++.+... ..++|+.++++----.. ........+.....+++..+
T Consensus 67 ~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~g-g~~a~~~Lr~~l~~lg~~v~ 142 (193)
T 3svl_A 67 AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIG-GARCQYHLRQILVFLDAMVM 142 (193)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcc-hHHHHHHHHHHHHHCCCEEc
Confidence 44578999999998877654444455555555441 22788888886322111 11123445556666676544
No 391
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=28.31 E-value=13 Score=30.62 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=17.1
Q ss_pred CCceEEEEEeeccCccccceeee
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITK 29 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~k 29 (208)
+.....+.+|||+|+++|.....
T Consensus 80 ~~~~~~~~iiDtpG~~~f~~~~~ 102 (435)
T 1jny_A 80 ETKKYFFTIIDAPGHRDFVKNMI 102 (435)
T ss_dssp ECSSCEEEECCCSSSTTHHHHHH
T ss_pred ecCCeEEEEEECCCcHHHHHHHH
Confidence 33456799999999998876433
No 392
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=28.23 E-value=20 Score=26.25 Aligned_cols=12 Identities=8% Similarity=0.083 Sum_probs=7.9
Q ss_pred eEEEecCceEEE
Q psy2518 29 KAYYRGAQACVI 40 (208)
Q Consensus 29 ki~~vG~s~~gk 40 (208)
-+.++|.+|+||
T Consensus 29 ii~l~Gp~GsGK 40 (231)
T 3lnc_A 29 ILVLSSPSGCGK 40 (231)
T ss_dssp EEEEECSCC---
T ss_pred EEEEECCCCCCH
Confidence 478999999999
No 393
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=28.12 E-value=29 Score=29.88 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=20.5
Q ss_pred EEEEeeccCccccceeeeEEEecCceEE
Q psy2518 12 RLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 12 ~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.+.+|||+|+++|.....-.+....++.
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aI 98 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAI 98 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 5999999999999887764444444444
No 394
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=27.91 E-value=9.7 Score=27.43 Aligned_cols=12 Identities=8% Similarity=0.027 Sum_probs=11.2
Q ss_pred eEEEecCceEEE
Q psy2518 29 KAYYRGAQACVI 40 (208)
Q Consensus 29 ki~~vG~s~~gk 40 (208)
.++++|++|+||
T Consensus 6 ~i~lvGpsGaGK 17 (198)
T 1lvg_A 6 PVVLSGPSGAGK 17 (198)
T ss_dssp CEEEECCTTSSH
T ss_pred EEEEECCCCCCH
Confidence 688999999999
No 395
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=27.82 E-value=23 Score=28.94 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=16.1
Q ss_pred ceEEEEEeeccCccccceeee
Q psy2518 9 EEVRLMLWDTAGQEEFDAITK 29 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~k 29 (208)
....+.+|||+|+++|.....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~ 122 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMA 122 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHH
T ss_pred CCceEEEEECCChHHHHHHHH
Confidence 345799999999998865543
No 396
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=27.73 E-value=28 Score=24.67 Aligned_cols=71 Identities=8% Similarity=-0.026 Sum_probs=42.6
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE----CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM 164 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~----~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (208)
..+..+|++++++..-...--..++.|++.+... ..++|+.++++--.-.. ........+.+....|+.++
T Consensus 68 ~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~ 142 (193)
T 1rtt_A 68 EQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPL 142 (193)
T ss_dssp HHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEEC
T ss_pred HHHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEc
Confidence 4567899999998776654444567777777542 33688888887632111 11123444555666676443
No 397
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=27.39 E-value=34 Score=29.56 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=24.8
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI 40 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk 40 (208)
++....+.+|||+|+++|.....-.+.+..++..
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aIL 100 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALL 100 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEE
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEE
Confidence 4556889999999999998766555555555543
No 398
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=27.13 E-value=30 Score=29.28 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518 113 FEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186 (208)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 186 (208)
+.++.+.++.++++ ..|++|..|+.....+ -..+..+++|++.|+.+..+=++-|.|-.++-+.+++.+-
T Consensus 360 ~~NL~kHien~~~f--GvpvVVaiN~F~tDT~--aEi~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~ 429 (557)
T 3pzx_A 360 FANLEKHIENIGKF--GVPAVVAINAFPTDTE--AELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLE 429 (557)
T ss_dssp HHHHHHHHHHHHTT--TCCEEEEEECCTTCCH--HHHHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCeEEEEeCCCCCCH--HHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHh
Confidence 33455555555543 7999999999764221 1123455566666766554456667787787777776653
No 399
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=27.06 E-value=27 Score=23.40 Aligned_cols=15 Identities=7% Similarity=0.255 Sum_probs=12.7
Q ss_pred eeeEEEecCceEEEE
Q psy2518 27 ITKAYYRGAQACVIT 41 (208)
Q Consensus 27 ~~ki~~vG~s~~gk~ 41 (208)
...|++.|+.|+||+
T Consensus 27 ~~~vll~G~~GtGKt 41 (143)
T 3co5_A 27 TSPVFLTGEAGSPFE 41 (143)
T ss_dssp SSCEEEEEETTCCHH
T ss_pred CCcEEEECCCCccHH
Confidence 356999999999993
No 400
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=26.35 E-value=34 Score=29.53 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=23.0
Q ss_pred CCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
++....+.+|||+|+++|.....-.+.+..++.
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aI 101 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGAL 101 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEE
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEE
Confidence 345688999999999998765544444444443
No 401
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=26.24 E-value=32 Score=26.82 Aligned_cols=59 Identities=12% Similarity=-0.073 Sum_probs=35.1
Q ss_pred EEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCE-EEEEeCC
Q psy2518 75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT-VLVQNKI 139 (208)
Q Consensus 75 ~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pi-ivvgnK~ 139 (208)
-+.|-|+-+.... + .+..+|++|++-|+++....+.+..++..+.+. +..++ ++.||.=
T Consensus 62 i~~iSD~H~~~~~--l---~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l-~~~~v~~V~GNHD 121 (296)
T 3rl5_A 62 FVCISDTRSRTDG--I---QMPYGDILLHTGDFTELGLPSEVKKFNDWLGNL-PYEYKIVIAGNHE 121 (296)
T ss_dssp EEEEBCCTTCCTT--C---CCCSCSEEEECSCCSSSCCHHHHHHHHHHHHTS-CCSEEEECCCTTC
T ss_pred EEEEeeCCCCcch--h---ccCCCCEEEECCcccCCCCHHHHHHHHHHHHhC-CCCeEEEEcCCcc
Confidence 3667788765331 1 346899999999999876655554444444433 22334 4446653
No 402
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=25.62 E-value=15 Score=30.53 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=21.0
Q ss_pred CceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 39 (208)
Q Consensus 8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g 39 (208)
.....+.+|||+|+++|.....-.+.+..++.
T Consensus 108 ~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~l 139 (483)
T 3p26_A 108 THRANFTIVDAPGHRDFVPNAIMGISQADMAI 139 (483)
T ss_dssp CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEE
T ss_pred cCCceEEEEECCCcHHHHHHHHHhhhhCCEEE
Confidence 34467899999999887655544444444433
No 403
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=25.36 E-value=2.4e+02 Score=21.88 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=49.9
Q ss_pred EEEEEEEeCCChhhhc-----chhH--hhh-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCC
Q psy2518 73 EVRLMLWDTAGQEEFD-----AITK--AYY-----RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKI 139 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~-----~~~~--~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~ 139 (208)
.+.+.|.||+|..... .+.. ..+ ..+|.+++|.+.... .+.+.. ........+ .=+|.||.
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~----~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ----AEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH----HHHHTTTSCCCEEEEECG
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH----HHHHhhcCCCcEEEEeCC
Confidence 3568899999964421 1110 111 247899999988742 233322 222222233 34678999
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518 140 DLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN 175 (208)
Q Consensus 140 Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 175 (208)
|-.. + -..+.......+.++..+. .|++++
T Consensus 265 d~~~-~---~g~~~~~~~~~~~Pi~~i~--~Ge~~~ 294 (320)
T 1zu4_A 265 DSTS-K---GGIGLAIKELLNIPIKMIG--VGEKVD 294 (320)
T ss_dssp GGCS-C---TTHHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred CCCC-c---hhHHHHHHHHHCcCEEEEe--CCCCcc
Confidence 9533 2 1255667777888776554 344444
No 404
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=24.91 E-value=1.8e+02 Score=21.10 Aligned_cols=37 Identities=5% Similarity=0.109 Sum_probs=22.6
Q ss_pred EEEEeCCCh-hhhcchhHhh-hcCCcEEEEEEeCCChhh
Q psy2518 76 LMLWDTAGQ-EEFDAITKAY-YRGAQACVITFSTIDRDS 112 (208)
Q Consensus 76 l~i~Dt~g~-~~~~~~~~~~-~~~~d~ii~v~d~~~~~s 112 (208)
+.+-|+-+. +.+..+.... -..+|+++++-|+.+...
T Consensus 9 ~~iSDlH~~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 9 LAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEA 47 (260)
T ss_dssp EEEECCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCHH
T ss_pred EEEeecCCChHHHHHHHHHHHhcCCCEEEECCCCCCccC
Confidence 556677553 2233322222 247999999999988654
No 405
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=24.50 E-value=85 Score=22.45 Aligned_cols=48 Identities=10% Similarity=0.170 Sum_probs=30.9
Q ss_pred hHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhh--cCCCCEEEEEeC
Q psy2518 91 TKAYYRGAQACVITFSTID---RDSFEAAHSWKMKVENE--CGEIPTVLVQNK 138 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~--~~~~piivvgnK 138 (208)
+...+..||++|++-..-+ +..+.+...|+...... ..++|+.+++.=
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S 113 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTS 113 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEE
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeC
Confidence 3456889999999976655 34566666676431111 127889888753
No 406
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=24.29 E-value=94 Score=24.78 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=24.7
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 109 (208)
.+.+.|+||+..-. ......+..+|.++++...+.
T Consensus 244 ~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~ 278 (398)
T 3ez2_A 244 DYDFILVDSGPHLD--AFLKNALASANILFTPLPPAT 278 (398)
T ss_dssp TCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSH
T ss_pred cCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCch
Confidence 35689999987542 223445668999999998764
No 407
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=24.07 E-value=13 Score=27.13 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=11.4
Q ss_pred eeEEEecCceEEE
Q psy2518 28 TKAYYRGAQACVI 40 (208)
Q Consensus 28 ~ki~~vG~s~~gk 40 (208)
-.++++|++|+||
T Consensus 20 ~~ivl~GPSGaGK 32 (197)
T 3ney_A 20 KTLVLIGASGVGR 32 (197)
T ss_dssp CEEEEECCTTSSH
T ss_pred CEEEEECcCCCCH
Confidence 4578999999999
No 408
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=24.02 E-value=23 Score=29.96 Aligned_cols=28 Identities=7% Similarity=0.134 Sum_probs=24.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518 161 CRLMRTSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 161 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
++++.+||++|.||+++++.+++.+...
T Consensus 251 ~PV~~gSA~~~~GV~~Lld~i~~~~p~p 278 (528)
T 3tr5_A 251 TPIFFGSAINNFGVGELLDAFVKEAPPP 278 (528)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCC
T ss_pred eEEEeccccCCccHHHHHHHHHHhCCCC
Confidence 3899999999999999999999887543
No 409
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=23.72 E-value=1.1e+02 Score=21.31 Aligned_cols=74 Identities=8% Similarity=-0.064 Sum_probs=42.9
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-----cCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEE
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE-----CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 165 (208)
...+..+|++++....-...-...++.|++.+... ..+.|+.++++--..........+....+....|+.++.
T Consensus 65 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 65 LDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred HHHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 34567899999999887644344456666655321 226777777764332111122344555667777876543
No 410
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=23.61 E-value=65 Score=25.28 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=34.3
Q ss_pred CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183 (208)
Q Consensus 129 ~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 183 (208)
..|+| |.+|-|.. .++..+.|++.+++++.+++.+...+..+...+..
T Consensus 80 ~~P~I-Iltrg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~ 127 (314)
T 1ko7_A 80 ETPAI-IVTRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEH 127 (314)
T ss_dssp TCCCE-EECTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHH
T ss_pred CCCEE-EEeCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHH
Confidence 45555 45666642 45567788999999999998887777777666544
No 411
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=23.54 E-value=1.5e+02 Score=22.70 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=46.6
Q ss_pred EEEEEEeCCChhhhcc-hh---Hhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC
Q psy2518 74 VRLMLWDTAGQEEFDA-IT---KAYYR--GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV 147 (208)
Q Consensus 74 ~~l~i~Dt~g~~~~~~-~~---~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v 147 (208)
+.+.|.||+|...... .. ...+. ..+.+++|.|.+.. .+.+..+...+.. . +. .-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~-l-~~-~giVltk~D~~~~--- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS-V-PV-NQYIFTKIDETTS--- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS-S-CC-CEEEEECTTTCSC---
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc-C-CC-CEEEEeCCCcccc---
Confidence 4688999999754322 11 11222 36778889987643 2333333332221 1 22 3445699996432
Q ss_pred CHHHHHHHHHHhCCeEEEEe
Q psy2518 148 APEEADLLSRALGCRLMRTS 167 (208)
Q Consensus 148 ~~~~~~~~~~~~~~~~~e~S 167 (208)
...+...+...+.++..++
T Consensus 255 -~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 -LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp -CHHHHHHHHTCSCCCSEEC
T ss_pred -hhHHHHHHHHHCcCEEEEE
Confidence 2355667777787765544
No 412
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=23.33 E-value=20 Score=31.56 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=25.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518 161 CRLMRTSVKEDINVNSIFRYLTTKCLSEL 189 (208)
Q Consensus 161 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 189 (208)
++++..||++|.|++.+++.++..+....
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~ 290 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYLPSPV 290 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCCChh
Confidence 48999999999999999999999886543
No 413
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=23.24 E-value=73 Score=22.79 Aligned_cols=71 Identities=8% Similarity=0.045 Sum_probs=41.3
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe
Q psy2518 91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCR 162 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~ 162 (208)
....+..||+++++...-+..-...++.|++.+.. ...++|+.++++- .-.......+...+.....+|+.
T Consensus 79 ~~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~-G~~~~~~~~~~~L~~il~~lg~~ 150 (191)
T 3k1y_A 79 ITSALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATA-GSARHSLVLDYALRPLLSYMRAV 150 (191)
T ss_dssp HHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEE-SSSTTTTHHHHTHHHHHHHTTCE
T ss_pred HHHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeC-CCcchhhHHHHHHHHHHHHCCCE
Confidence 34467899999999988775544555666666543 2227888888873 21111111112245556666764
No 414
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=23.11 E-value=69 Score=22.74 Aligned_cols=71 Identities=8% Similarity=-0.096 Sum_probs=44.2
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-----------cCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh
Q psy2518 91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE-----------CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL 159 (208)
Q Consensus 91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-----------~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~ 159 (208)
....+..||++|++...-+..--..++.|++.+... ..++|+.++++--..... ......+......
T Consensus 61 ~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~~--~~~~~l~~~l~~~ 138 (192)
T 3fvw_A 61 AREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASPE--EVFEDYRSLLPFI 138 (192)
T ss_dssp HHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcchh--HHHHHHHHHHHHc
Confidence 345678999999998877655445567777777641 226788887765432221 2235556667777
Q ss_pred CCeE
Q psy2518 160 GCRL 163 (208)
Q Consensus 160 ~~~~ 163 (208)
|+..
T Consensus 139 G~~~ 142 (192)
T 3fvw_A 139 RMHL 142 (192)
T ss_dssp TCEE
T ss_pred CCee
Confidence 7643
No 415
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=23.03 E-value=2.6e+02 Score=21.48 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=40.0
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEE----eCCCCCCCCCCCHHHHHHHHH
Q psy2518 95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQ----NKIDLLDQSVVAPEEADLLSR 157 (208)
Q Consensus 95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvg----nK~Dl~~~~~v~~~~~~~~~~ 157 (208)
-.++|+++++-..-.+.+-+.+..++..+....++.|+++-- +..|+ +.+...++++
T Consensus 104 ~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l------~~~~~~~La~ 164 (303)
T 2wkj_A 104 RYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL------TLDQINTLVT 164 (303)
T ss_dssp HHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCC------CHHHHHHHHT
T ss_pred hCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCC------CHHHHHHHhc
Confidence 358999999977766667788888888888766448888754 34553 4455555553
No 416
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=22.93 E-value=47 Score=23.62 Aligned_cols=70 Identities=6% Similarity=-0.052 Sum_probs=40.9
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCEEEEEeCCCCCCCCCCCH-HHHHHHHHHhCCeEE
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE-CGEIPTVLVQNKIDLLDQSVVAP-EEADLLSRALGCRLM 164 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~piivvgnK~Dl~~~~~v~~-~~~~~~~~~~~~~~~ 164 (208)
..+..+|+++++...-+..-...++.|++.+... ..+.|+.++++ ..-.... ... ...+.+....|+.++
T Consensus 65 ~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t-gg~~~~~-~a~~~~l~~~l~~~g~~~v 136 (197)
T 2vzf_A 65 DATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLAT-GGSPAHV-LALDYGLRPVLHSMGVRHV 136 (197)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE-ESSGGGG-GHHHHTHHHHHHTTTCSEE
T ss_pred HHHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEEE-CCCcchh-hHHHHHHHHHHHHcCCEec
Confidence 3567899999999887654344455666555322 22788988888 3321111 111 234556666776543
No 417
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=22.76 E-value=16 Score=26.99 Aligned_cols=12 Identities=0% Similarity=-0.266 Sum_probs=10.9
Q ss_pred eEEEecCceEEE
Q psy2518 29 KAYYRGAQACVI 40 (208)
Q Consensus 29 ki~~vG~s~~gk 40 (208)
-++++|++|+||
T Consensus 18 ii~l~GpsGsGK 29 (219)
T 1s96_A 18 LYIVSAPSGAGK 29 (219)
T ss_dssp EEEEECCTTSCH
T ss_pred EEEEECCCCCCH
Confidence 578999999999
No 418
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=22.62 E-value=16 Score=26.43 Aligned_cols=24 Identities=8% Similarity=-0.033 Sum_probs=16.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518 161 CRLMRTSVKEDINVNSIFRYLTTKCLSE 188 (208)
Q Consensus 161 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 188 (208)
+.++-+ +.++++.+..+...+...
T Consensus 166 ~d~viv----N~~~~~~~~~l~~~i~~~ 189 (208)
T 3tau_A 166 YDYAVV----NDVVANAVQKIKGIVETE 189 (208)
T ss_dssp SSEEEE----CSSHHHHHHHHHHHHHHH
T ss_pred CCEEEE----CcCHHHHHHHHHHHHHHH
Confidence 345544 346999999888777654
No 419
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=22.37 E-value=80 Score=22.11 Aligned_cols=73 Identities=7% Similarity=-0.078 Sum_probs=41.2
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-----cCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE-----CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM 164 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (208)
...+..+|++++....-...-...++.|++.+... ..+.|+.++++---......-..+....+....|+.++
T Consensus 66 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~ 143 (200)
T 2a5l_A 66 LEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 143 (200)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 44567899999999887654344456666655332 23678887777432211111122334455556676543
No 420
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=22.18 E-value=16 Score=25.45 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=11.9
Q ss_pred eEEEecCceEEE-EEE
Q psy2518 29 KAYYRGAQACVI-TFS 43 (208)
Q Consensus 29 ki~~vG~s~~gk-~~~ 43 (208)
-+.++|.+|+|| ++.
T Consensus 11 i~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 467899999999 443
No 421
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=22.13 E-value=93 Score=24.65 Aligned_cols=51 Identities=10% Similarity=-0.205 Sum_probs=31.6
Q ss_pred EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy2518 73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE 126 (208)
Q Consensus 73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 126 (208)
.+.+.|+||+.... ......+..+|.+++|...+ +.+...+..+...+...
T Consensus 259 ~yD~VIID~p~~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~l~~~~~~l~~l 309 (373)
T 3fkq_A 259 NYDEIIVDLPFSLE--IEKLKLLSKAWRIIVVNDGS-QLSNYKFMRAYESVVLL 309 (373)
T ss_dssp CCSEEEEECCCCCC--HHHHHHHTTCSEEEEEECCC-HHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEecCC-chHHHHHHHHHHHHHHh
Confidence 46688999984322 23455678899999998765 55544444444444433
No 422
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=21.94 E-value=80 Score=22.47 Aligned_cols=46 Identities=7% Similarity=-0.063 Sum_probs=32.9
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh--------------cCCCCEEEEEeC
Q psy2518 93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE--------------CGEIPTVLVQNK 138 (208)
Q Consensus 93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~--------------~~~~piivvgnK 138 (208)
..+..||++++++.+-+-.--..++.|++.+... ...++++++.+-
T Consensus 69 ~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~ 128 (196)
T 3lcm_A 69 DLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTH 128 (196)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEEC
T ss_pred HHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcC
Confidence 4578899999999987765556678888888432 125677777654
No 423
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=21.84 E-value=5.5 Score=31.28 Aligned_cols=20 Identities=10% Similarity=-0.099 Sum_probs=14.7
Q ss_pred eEEEecCceEEE-EEEeeecC
Q psy2518 29 KAYYRGAQACVI-TFSTIDRD 48 (208)
Q Consensus 29 ki~~vG~s~~gk-~~~~~~~~ 48 (208)
.+.++|++|+|| ++.+.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 688999999999 44444444
No 424
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=21.82 E-value=21 Score=26.87 Aligned_cols=15 Identities=13% Similarity=-0.051 Sum_probs=12.5
Q ss_pred eeeEEEecCceEEEE
Q psy2518 27 ITKAYYRGAQACVIT 41 (208)
Q Consensus 27 ~~ki~~vG~s~~gk~ 41 (208)
.-.+++.|+.|+||+
T Consensus 51 ~~~~ll~G~~GtGKT 65 (285)
T 3h4m_A 51 PKGILLYGPPGTGKT 65 (285)
T ss_dssp CSEEEEESSSSSSHH
T ss_pred CCeEEEECCCCCcHH
Confidence 345899999999993
No 425
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=21.76 E-value=39 Score=23.46 Aligned_cols=72 Identities=13% Similarity=-0.014 Sum_probs=43.0
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM 164 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (208)
...+..+|+++++...-+..-...++.|++.+.. ...++|+.++++----.. ........+......|+.++
T Consensus 58 ~~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g-~~~a~~~l~~~l~~~g~~~v 130 (174)
T 3gfs_A 58 KQRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGDG-GINALNNMRTVMRGVYANVI 130 (174)
T ss_dssp HHHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTC-SHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEEECCCChh-HHHHHHHHHHHHHHcCCEEe
Confidence 3457889999999988775544555656554432 222688888886432111 11123455666677787554
No 426
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=21.68 E-value=16 Score=25.76 Aligned_cols=11 Identities=9% Similarity=-0.031 Sum_probs=10.2
Q ss_pred EEEecCceEEE
Q psy2518 30 AYYRGAQACVI 40 (208)
Q Consensus 30 i~~vG~s~~gk 40 (208)
+.++|++|+||
T Consensus 4 i~l~GpsGaGK 14 (186)
T 3a00_A 4 IVISGPSGTGK 14 (186)
T ss_dssp EEEESSSSSSH
T ss_pred EEEECCCCCCH
Confidence 67899999999
No 427
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=21.61 E-value=22 Score=30.75 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=18.7
Q ss_pred ceEEEEEeeccCccccceeeeEEEecCce
Q psy2518 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQA 37 (208)
Q Consensus 9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~ 37 (208)
....+.+|||+|+++|.....-.+.+..+
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~ 271 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADM 271 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSE
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCc
Confidence 34578999999998875544433333333
No 428
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=21.19 E-value=18 Score=25.99 Aligned_cols=13 Identities=8% Similarity=-0.097 Sum_probs=11.5
Q ss_pred eeEEEecCceEEE
Q psy2518 28 TKAYYRGAQACVI 40 (208)
Q Consensus 28 ~ki~~vG~s~~gk 40 (208)
.-++++|.+|+||
T Consensus 13 ~~i~l~G~sGsGK 25 (204)
T 2qor_A 13 PPLVVCGPSGVGK 25 (204)
T ss_dssp CCEEEECCTTSCH
T ss_pred CEEEEECCCCCCH
Confidence 4578999999999
No 429
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=21.00 E-value=1.1e+02 Score=21.25 Aligned_cols=73 Identities=4% Similarity=-0.185 Sum_probs=40.0
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-----cCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEE
Q psy2518 92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE-----CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165 (208)
Q Consensus 92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 165 (208)
...+..+|++++....-...-...++.|++.+... ..+.|+.++++--.. ................+|+.++.
T Consensus 63 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 63 PQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp GGGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 34567899999998876544334455666554321 236777777765332 11111223334455556765543
No 430
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=20.96 E-value=17 Score=25.68 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=11.2
Q ss_pred eEEEecCceEEE
Q psy2518 29 KAYYRGAQACVI 40 (208)
Q Consensus 29 ki~~vG~s~~gk 40 (208)
++.++|++|+||
T Consensus 2 ~i~l~G~nGsGK 13 (178)
T 1ye8_A 2 KIIITGEPGVGK 13 (178)
T ss_dssp EEEEECCTTSSH
T ss_pred EEEEECCCCCCH
Confidence 688999999999
No 431
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=20.48 E-value=17 Score=26.56 Aligned_cols=12 Identities=8% Similarity=-0.097 Sum_probs=11.0
Q ss_pred eEEEecCceEEE
Q psy2518 29 KAYYRGAQACVI 40 (208)
Q Consensus 29 ki~~vG~s~~gk 40 (208)
.+.++|++|+||
T Consensus 25 ~~~lvGpsGsGK 36 (218)
T 1z6g_A 25 PLVICGPSGVGK 36 (218)
T ss_dssp CEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 578999999999
No 432
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=20.26 E-value=6.6 Score=29.66 Aligned_cols=21 Identities=10% Similarity=-0.066 Sum_probs=15.5
Q ss_pred eEEEecCceEEE-EEEeeecCc
Q psy2518 29 KAYYRGAQACVI-TFSTIDRDS 49 (208)
Q Consensus 29 ki~~vG~s~~gk-~~~~~~~~~ 49 (208)
.+.++|++|+|| ++.+.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 578999999999 555444443
No 433
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=20.22 E-value=1.1e+02 Score=19.98 Aligned_cols=67 Identities=9% Similarity=0.041 Sum_probs=38.6
Q ss_pred hhcCCcEEEEEEeCCChhhH-H-HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeE
Q psy2518 94 YYRGAQACVITFSTIDRDSF-E-AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRL 163 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~~s~-~-~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~ 163 (208)
.+..+|++++........-. . .+..|+..+.....+.++.++++--.- . .-......+..+..|+..
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~t~g~~-~--~~a~~~l~~~l~~~G~~~ 110 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTKISGKKVALFGSYGWG-D--GKWMRDFEERMNGYGCVV 110 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEEEEESSS-C--SHHHHHHHHHHHHTTCEE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEEEecCCC-C--ChHHHHHHHHHHHCCCEE
Confidence 45689999999887543211 1 345556655543347888888873221 1 122345555666677644
No 434
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=20.11 E-value=1e+02 Score=23.26 Aligned_cols=45 Identities=13% Similarity=0.032 Sum_probs=32.2
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh--------------cCCCCEEEEEeC
Q psy2518 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENE--------------CGEIPTVLVQNK 138 (208)
Q Consensus 94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~--------------~~~~piivvgnK 138 (208)
.+..||++|+.+.+-.-.--..++.|++.+... ....+++++.+-
T Consensus 90 ~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~ 148 (273)
T 1d4a_A 90 KLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITT 148 (273)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEEC
T ss_pred HHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeC
Confidence 378899999999987755455578888887432 125677777664
No 435
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=20.08 E-value=19 Score=25.51 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHHHH
Q psy2518 173 NVNSIFRYLTTKCLSE 188 (208)
Q Consensus 173 ~i~~~f~~i~~~~~~~ 188 (208)
+++++++.+...+...
T Consensus 172 ~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 172 NFDQAVQNLIHIISAE 187 (205)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7999999888776543
No 436
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=20.06 E-value=11 Score=28.48 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=31.2
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHH------HHhCCeEEEEe
Q psy2518 97 GAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLS------RALGCRLMRTS 167 (208)
Q Consensus 97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~------~~~~~~~~e~S 167 (208)
-..++|+||+...+...+.+.+ ...... +..+++||.-.+ +..++...+. ...|+.|+...
T Consensus 102 viggII~~f~~p~~~~~~~i~~----~~~~~~~dg~~v~Vg~~~~------~~~~~~de~~e~~~~~~~~GfE~V~~~ 169 (233)
T 3uc9_A 102 VMAGIILITDIRQTKPQELLHQ----FMIAAHRNTFVVLVNVNEE------VEQDEIDELNEIWSNAFTNVIEFVNWK 169 (233)
T ss_dssp TEEEEEEEECHHHHCGGGTHHH----HHHHSCTTCEEEEEECCTT------CCHHHHHHHHHHHTTSSSSCEEEEECC
T ss_pred hcceEEEEEeCCCcchHHHHHH----HhccCCCCceEEEEecCCc------cCCCchhhHHHHHHHHHhcCeEEEEec
Confidence 3478999998766554443332 222223 455555554333 2333333332 23466788654
Done!