RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2518
(208 letters)
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 145 bits (369), Expect = 9e-45
Identities = 81/123 (65%), Positives = 95/123 (77%), Gaps = 1/123 (0%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
R I + E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA SW+ KV
Sbjct: 45 RQI-QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV 103
Query: 124 ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183
E G+IPT LVQNKIDLLD S + EEA+ L++ L R RTSVKED+NV+ +F+YL
Sbjct: 104 VAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 163
Query: 184 KCL 186
K L
Sbjct: 164 KHL 166
Score = 82.2 bits (204), Expect = 4e-20
Identities = 41/50 (82%), Positives = 44/50 (88%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA SW
Sbjct: 50 NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW 99
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 120 bits (304), Expect = 5e-35
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
+ R+I +GEE LM++D Q+ + A VI +S D+ SFE A
Sbjct: 36 HTYDRSI-VVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL 94
Query: 120 KMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
++++ ++P +LV NK DL+ V+ +E + C+ + TS NV ++
Sbjct: 95 RVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQAL 154
Query: 178 F 178
F
Sbjct: 155 F 155
Score = 69.8 bits (172), Expect = 2e-15
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
+GEE LM++D Q+ + A VI +S D+ SFE A +++ ++R
Sbjct: 44 VDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ--LRR- 100
Query: 66 IKECEGEEVRLML 78
++ ++V ++L
Sbjct: 101 ARQT--DDVPIIL 111
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 120 bits (304), Expect = 8e-35
Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
S ++ + +GEEV++ + DTAGQE++ AI Y+R + + FS + +SF A +
Sbjct: 53 DSYRKKV-VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADF 111
Query: 120 KMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
+ ++ +P +LV NK DL D+ V+ EEA + + TS K NV+ +
Sbjct: 112 REQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171
Query: 178 FRYLTTKCLSELRQQEEEYS 197
F L + E+R ++ E S
Sbjct: 172 FFDL----MREIRARKMEDS 187
Score = 68.7 bits (169), Expect = 8e-15
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
+GEEV++ + DTAGQE++ AI Y+R + + FS + +SF A ++ + I R
Sbjct: 61 LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQ--ILR- 117
Query: 66 IKECEGEEVRLML 78
+KE E V +L
Sbjct: 118 VKED--ENVPFLL 128
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 120 bits (304), Expect = 2e-34
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 7/148 (4%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
S ++ + +GEEV++ + DTAGQE++ AI Y+R + + FS + +SF A +
Sbjct: 49 DSYRKKV-VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADF 107
Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
+ ++ E +P +LV NK DL D+ V+ EEA + + TS K NV+ +
Sbjct: 108 REQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167
Query: 178 FRYLTTKCLSELRQQEEEYSINGNGLPP 205
F L + E+R ++ E S NG
Sbjct: 168 FFDL----MREIRARKMEDSKEKNGKKK 191
Score = 68.4 bits (168), Expect = 1e-14
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
+GEEV++ + DTAGQE++ AI Y+R + + FS + +SF A ++ + I R
Sbjct: 57 LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQ--ILR- 113
Query: 66 IKECE 70
+KE E
Sbjct: 114 VKEDE 118
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 119 bits (302), Expect = 2e-34
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
RT+ E GE+V+L +WDTAGQE F IT YYRG ++ + +SF W ++
Sbjct: 49 RTV-EINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI 107
Query: 124 ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183
C ++ +LV NK D ++ VV E+A + +G +L TS KE++NV +F +T
Sbjct: 108 NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITE 167
Query: 184 KCLSELRQQEEE 195
L + +
Sbjct: 168 LVLRAKKDNLAK 179
Score = 70.3 bits (173), Expect = 2e-15
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
GE+V+L +WDTAGQE F IT YYRG ++ + +SF W
Sbjct: 54 NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRW 103
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 119 bits (300), Expect = 2e-34
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
S ++ + +GEEV++ + DTAGQE++ AI Y+R + + FS + +SF A +
Sbjct: 39 DSYRKKV-VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADF 97
Query: 120 KMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
+ ++ +P +LV NK DL D+ V+ EEA + + TS K NV+ +
Sbjct: 98 REQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKV 157
Query: 178 FRYLT 182
F L
Sbjct: 158 FFDLM 162
Score = 68.3 bits (168), Expect = 7e-15
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
+GEEV++ + DTAGQE++ AI Y+R + + FS + +SF A ++ + I R
Sbjct: 47 LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQ--ILR- 103
Query: 66 IKECEGEEVRLML 78
+KE E V +L
Sbjct: 104 VKED--ENVPFLL 114
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 119 bits (301), Expect = 2e-34
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 63 KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
I +G RL + DTAGQEEF A+ + Y R ++ F+ DR SF +
Sbjct: 46 YTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQ 105
Query: 123 VEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180
+ + + P VLV NK DL Q V EA + S K +NV+ F
Sbjct: 106 ILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF-- 163
Query: 181 LTTKCLSELRQQEEE 195
+ + +R+ +E+
Sbjct: 164 --EQLVRAVRKYQEQ 176
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 118 bits (299), Expect = 3e-34
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
+ ++ I C+ L + DT G +F A+ + A ++ +S R S E
Sbjct: 38 DTYRQVI-SCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPI 96
Query: 120 K---MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176
+++ + IP +LV NK D V EA+ L+R C M TS K + NV
Sbjct: 97 YEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKE 156
Query: 177 IFRYLTTKCLSELRQQE 193
+F+ L L+ +++
Sbjct: 157 LFQEL----LNLEKRRT 169
Score = 68.3 bits (168), Expect = 6e-15
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
C+ L + DT G +F A+ + A ++ +S R S E + I
Sbjct: 46 CDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ--ICEI 103
Query: 66 IKECE 70
+ E
Sbjct: 104 KGDVE 108
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 118 bits (298), Expect = 5e-34
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
+ + I G+E L L DTAGQ+E+ + Y ++ +S SFE
Sbjct: 41 NTFTKLI-TVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVI 99
Query: 120 KMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
K+ + G +IP +LV NK DL + V++ EE L+ + + +S KE+ +
Sbjct: 100 HGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 159
Query: 178 FRYLTTKCLSELRQQEEEYS 197
FR + + E + + S
Sbjct: 160 FRRI----ILEAEKMDGACS 175
Score = 67.5 bits (166), Expect = 2e-14
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
G+E L L DTAGQ+E+ + Y ++ +S SFE K +
Sbjct: 49 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGK--LLD- 105
Query: 66 IKECE 70
+
Sbjct: 106 MVGKV 110
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 119 bits (300), Expect = 7e-34
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 6/143 (4%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+ + +G ++ +WDTAGQE+ + YY GA ++ F R + + W +
Sbjct: 52 TFL-DDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF 110
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ G P V+ NKID+ ++ ++ + + + S K N F +L
Sbjct: 111 QAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170
Query: 183 TKCLSELRQQEEEYSINGNGLPP 205
+ + ++ L P
Sbjct: 171 RI----FTGRPDLIFVSNVNLEP 189
Score = 72.3 bits (178), Expect = 6e-16
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G ++ +WDTAGQE+ + YY GA ++ F R + + W
Sbjct: 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARW 106
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 119 bits (300), Expect = 7e-34
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
++ +WDTAGQE+F + YY AQ +I F R +++ +W +
Sbjct: 55 LVF-HTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113
Query: 124 ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183
C IP VL NK+D+ D+ V ++ + R + S K + N F +L
Sbjct: 114 VRVCENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171
Query: 184 KCLSELRQQEEE 195
K + + +
Sbjct: 172 KLIGDPNLEFVA 183
Score = 72.7 bits (179), Expect = 5e-16
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE+F + YY AQ +I F R +++ +W
Sbjct: 60 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 109
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 118 bits (299), Expect = 8e-34
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+TI + ++L +WDTAG E + IT AYYRGA ++ + + +SF A W ++
Sbjct: 48 KTI-YRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI 106
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ + +LV NK D+ D+ VV+ E L+ LG S K++INV F L
Sbjct: 107 KTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166
Query: 183 TKCLSELRQQEEEYSINGNGLPP 205
++ + + G
Sbjct: 167 DVICEKMSESLDTADPAVTGAKQ 189
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 118 bits (298), Expect = 1e-33
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
+ + + +E L L DTAGQ+E+ + ++ G V+ +S SF+ S
Sbjct: 59 NTYSKIV-TLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESL 117
Query: 120 KMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
K+ G +P VLV NK DL + V E L+ + G M +S +E+ I
Sbjct: 118 YQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177
Query: 178 FRYLTTKCLSELRQQEEEYS 197
F TK + E+ + E Y
Sbjct: 178 F----TKVIQEIARVENSYG 193
Score = 67.6 bits (166), Expect = 3e-14
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
+E L L DTAGQ+E+ + ++ G V+ +S SF+ S K +
Sbjct: 67 LGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQK--LHE- 123
Query: 66 IKECEGEEVRLML 78
V ++L
Sbjct: 124 GHGK--TRVPVVL 134
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 118 bits (297), Expect = 1e-33
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 2/141 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
RTI E +G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W ++
Sbjct: 56 RTI-ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 114
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ E + +LV NK DL + VV A + +LG + TS K NV F +
Sbjct: 115 DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174
Query: 183 TKCLSELRQQEEEYSINGNGL 203
+ + + +
Sbjct: 175 AEIKKRMGPGATAGGAEKSNV 195
Score = 70.7 bits (174), Expect = 1e-15
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W
Sbjct: 61 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 110
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 118 bits (297), Expect = 1e-33
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ E +G+ V+L +WDTAGQE F IT +YYRG+ +I + D++SF W ++
Sbjct: 48 KTV-ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI 106
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ + +LV NK DL D+ VV + A + A + TS + NV F +
Sbjct: 107 DRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 166
Query: 183 TKCLSELRQQEEEYSINGNGLPP 205
+ + QQ +
Sbjct: 167 RQIKESMSQQNLNETTQKKEDKG 189
Score = 70.8 bits (174), Expect = 2e-15
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ V+L +WDTAGQE F IT +YYRG+ +I + D++SF W
Sbjct: 53 DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 102
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 116 bits (294), Expect = 2e-33
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDA-ITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
R I + EEV L+++D Q + + + A +I FS DR SF ++
Sbjct: 42 RRI-MVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR 100
Query: 123 VENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
+ ++P +LV NK DL V+ EE L+ L C+ + TS N +F
Sbjct: 101 LRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
Score = 68.3 bits (168), Expect = 6e-15
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 6 CEGEEVRLMLWDTAGQEEFDA-ITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+ EEV L+++D Q + + + A +I FS DR SF
Sbjct: 46 VDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET 97
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 117 bits (295), Expect = 2e-33
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 20/156 (12%)
Query: 43 STIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-ITKAYYRGAQAC 101
D++E R I + EEV L+++D Q + + + A
Sbjct: 54 PENPEDTYE------------RRI-MVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100
Query: 102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL 159
+I FS DR SF +++ ++P +LV NK DL V+ EE L+ L
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 160
Query: 160 GCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEE 195
C+ + TS N +F ++R +
Sbjct: 161 SCKHIETSAALHHNTRELFEGAVR----QIRLRRGR 192
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 116 bits (293), Expect = 2e-33
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 63 KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
R E + L + DTAG E+F ++ Y + Q ++ +S +++ SF+ + +
Sbjct: 40 YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQ 99
Query: 123 VEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180
+ ++P +LV NK+DL + V+ E L+ GC M TS K V+ +F
Sbjct: 100 IIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159
Query: 181 L 181
+
Sbjct: 160 I 160
Score = 67.1 bits (165), Expect = 2e-14
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
+ L + DTAG E+F ++ Y + Q ++ +S +++ SF+ + + I R
Sbjct: 46 VDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQ--IIR- 102
Query: 66 IKECE 70
+K E
Sbjct: 103 VKRYE 107
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 116 bits (292), Expect = 3e-33
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
S ++ + +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H +
Sbjct: 38 DSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96
Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
+ +++ + ++P VLV NK D L V +A L+R+ G + TS K V
Sbjct: 97 REQIKRVKDSDDVPMVLVGNKSD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDA 155
Query: 178 FRYLTTKCLSELRQQ 192
F L + E+RQ
Sbjct: 156 FYTL----VREIRQH 166
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 116 bits (294), Expect = 3e-33
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+ I G+ V+L +WDTAGQE F ++T++YYRGA ++ + R+++ A +W
Sbjct: 50 KII-NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA 108
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ I +L NK DL V EA ++ + TS NV F
Sbjct: 109 RMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 168
Query: 183 TKCLSELRQQEEEYSING 200
K L+++ E + G
Sbjct: 169 RKILNKIESGELDPERMG 186
Score = 71.8 bits (177), Expect = 4e-16
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+ V+L +WDTAGQE F ++T++YYRGA ++ + R+++ A +W
Sbjct: 55 GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 104
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 117 bits (295), Expect = 3e-33
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ E GE+V+L +WDTAGQE F +IT++YYR A A ++T+ +SF W ++
Sbjct: 66 KTV-EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI 124
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
E + TVLV NKIDL ++ V+ + A+ S A + TS KE NV +F L
Sbjct: 125 EQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184
Query: 183 TKCLSELRQQE 193
+ +SE RQ
Sbjct: 185 CRLISEARQNT 195
Score = 70.8 bits (174), Expect = 1e-15
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
GE+V+L +WDTAGQE F +IT++YYR A A ++T+ +SF W
Sbjct: 71 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 120
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 115 bits (291), Expect = 5e-33
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+ + G+ V L +WDTAGQE F A+ YYR + ++ + D DSF+ +W ++
Sbjct: 46 KKL-NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL 104
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
G I +V NKIDL + V+ +EA+ + ++G + TS K++ + +F L
Sbjct: 105 RKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164
Query: 183 TKCL 186
+ +
Sbjct: 165 KRMI 168
Score = 70.2 bits (173), Expect = 1e-15
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+ V L +WDTAGQE F A+ YYR + ++ + D DSF+ +W
Sbjct: 51 GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNW 100
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 116 bits (292), Expect = 6e-33
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ + ++L +WDTAGQE + IT AYYRGA ++ + +++SF A W ++
Sbjct: 62 KTV-YRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ + +LV NK DL D+ VV E+ L+ LG S KE+INV +F L
Sbjct: 121 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
Query: 183 TKCLSELRQ 191
++ +
Sbjct: 181 DVICEKMNE 189
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 116 bits (293), Expect = 6e-33
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+ + + V + +WDTAGQE F ++ A+YRGA CV+ F ++F+ SW+ +
Sbjct: 48 KEV-MVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 106
Query: 124 ENECGE-----IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
+ P V++ NKIDL ++ V TS KE INV F
Sbjct: 107 LIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Query: 179 RYLTTKCLSELRQQEEE 195
+ + L + + E
Sbjct: 167 QTIARNALKQETEVELY 183
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 115 bits (291), Expect = 7e-33
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 2/133 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
RTI E +G+ ++L +WDTAGQE F IT AYYRGA ++ + + SF+ +W +
Sbjct: 48 RTI-ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI 106
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
E + +++ NK D+ D+ V+ E + L+ G + M TS K +INV + F L
Sbjct: 107 EEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
Query: 183 TKCLSELRQQEEE 195
+++ + +
Sbjct: 167 RDIKAKMDKNWKA 179
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 116 bits (292), Expect = 8e-33
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
+ ++ I C+ L + DT G +F A+ + A ++ FS + S E
Sbjct: 43 DTYRQVI-SCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPI 101
Query: 120 K---MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176
++++ +IP +LV NK D Q V EA +++ C M TS K + NV
Sbjct: 102 YKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKE 160
Query: 177 IFRYLTTKCLSELRQQEEEYSINGN 201
+F+ L L+ ++ +I+G
Sbjct: 161 LFQEL----LTLETRRNMSLNIDGK 181
Score = 68.0 bits (167), Expect = 2e-14
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
C+ L + DT G +F A+ + A ++ FS + S E I +
Sbjct: 51 CDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKL--IVQI 108
Query: 66 IKECE 70
E
Sbjct: 109 KGSVE 113
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 115 bits (291), Expect = 8e-33
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
S ++ + +GE L + DTAGQEE+ A+ Y R + + F+ + SFE H +
Sbjct: 39 DSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHY 97
Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
+ +++ + ++P VLV NK D L V ++A L+R+ G + TS K V+
Sbjct: 98 REQIKRVKDSEDVPMVLVGNKCD-LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDA 156
Query: 178 FRYLTTKCLSELRQQEEEYSINGNG 202
F L + E+R+ +E+ S +G
Sbjct: 157 FYTL----VREIRKHKEKMSKDGKK 177
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 116 bits (292), Expect = 9e-33
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ E VRL LWDTAG E F ++ +Y R + V+ + + +SF+ W V
Sbjct: 56 KTM-YLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV 114
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
E G + +LV NK DL D+ V+ EE + ++ L + TS K NV +FR +
Sbjct: 115 RTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 174
Query: 183 TKCLSELRQQEEE 195
Q+
Sbjct: 175 AALPGMESTQDRS 187
Score = 70.8 bits (174), Expect = 2e-15
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
E VRL LWDTAG E F ++ +Y R + V+ + + +SF+ W
Sbjct: 61 EDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKW 110
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 115 bits (290), Expect = 9e-33
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ E VRL LWDTAGQE F ++ +Y R + V+ + + +SF W V
Sbjct: 54 KTM-YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV 112
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
E G + +LV NK DL D+ V+ EE + ++ L + TS K NV +FR +
Sbjct: 113 RTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172
Query: 183 TK 184
Sbjct: 173 AA 174
Score = 70.7 bits (174), Expect = 1e-15
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
E VRL LWDTAGQE F ++ +Y R + V+ + + +SF W
Sbjct: 59 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKW 108
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 115 bits (291), Expect = 1e-32
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
RTI E +G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W ++
Sbjct: 73 RTI-ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 131
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ E + +LV NK DL + VV A + +LG + TS K NV F +
Sbjct: 132 DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 191
Query: 183 TKCL 186
+
Sbjct: 192 AEIK 195
Score = 71.5 bits (176), Expect = 7e-16
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++L +WDTAGQE F IT +YYRGA ++ + D++SF W
Sbjct: 78 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 127
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 114 bits (289), Expect = 1e-32
Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+ + + +G +V+L +WDTAGQE F ++T AYYR A A ++ + ++ SF+ +W ++
Sbjct: 51 KVL-DVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI 109
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ +L+ NK+D + VV E+ + L++ G M TS K +NV+ F +
Sbjct: 110 HEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169
Query: 183 TKCLSELRQQ 192
+ +
Sbjct: 170 KELKRRSMKA 179
Score = 70.7 bits (174), Expect = 1e-15
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G +V+L +WDTAGQE F ++T AYYR A A ++ + ++ SF+ +W
Sbjct: 56 DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW 105
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 115 bits (290), Expect = 1e-32
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ C E + ++WDTAGQE F ++ YYRG+ A VI + +DSF W ++
Sbjct: 63 KTV-PCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL 121
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ E I + NK DL D V ++A + ++G ++ TS K IN+ +F+ ++
Sbjct: 122 KEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181
Query: 183 TK 184
+
Sbjct: 182 RQ 183
Score = 71.1 bits (175), Expect = 1e-15
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
E + ++WDTAGQE F ++ YYRG+ A VI + +DSF W
Sbjct: 68 GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKW 117
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 115 bits (291), Expect = 2e-32
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 2/140 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
RT+ E EG+ ++ +WDTAGQE + AIT AYYRGA +I + S+E + W ++
Sbjct: 53 RTL-EIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSEL 111
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ + L+ NK DL V EE+ ++ TS NV+ F L
Sbjct: 112 RENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171
Query: 183 TKCLSELRQQEEEYSINGNG 202
++ + + + +
Sbjct: 172 NTIYQKVSKHQMDLGDSSAN 191
Score = 71.3 bits (175), Expect = 1e-15
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
EG+ ++ +WDTAGQE + AIT AYYRGA +I + S+E + W
Sbjct: 58 EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW 107
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 114 bits (288), Expect = 2e-32
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 4/125 (3%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
R I V L +WD GQ + Y GAQ ++ + + SFE W V
Sbjct: 46 RRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVV 105
Query: 124 ENECGE----IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
+ E LV NKIDL + PE+ + G S K +V F+
Sbjct: 106 KKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQ 165
Query: 180 YLTTK 184
+ +
Sbjct: 166 KVAAE 170
Score = 71.4 bits (176), Expect = 6e-16
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECE 70
V L +WD GQ + Y GAQ ++ + + SFE W V + + E
Sbjct: 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVV---KKVSEES 112
Query: 71 GEEVRLML 78
+ + L
Sbjct: 113 ETQPLVAL 120
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 115 bits (289), Expect = 2e-32
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
R+I + +G+ ++ +WDTAGQE + IT AYYRGA ++ + ++E W ++
Sbjct: 45 RSI-QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 103
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ I +LV NK DL V +EA + + TS + NV F+ +
Sbjct: 104 RDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163
Query: 183 TKCLSELRQQEEEYSINGNGLP 204
T+ + Q++ + P
Sbjct: 164 TEIYRIVSQKQIADRAAHDESP 185
Score = 71.5 bits (176), Expect = 9e-16
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++ +WDTAGQE + IT AYYRGA ++ + ++E W
Sbjct: 50 DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERW 99
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 114 bits (288), Expect = 2e-32
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+TI +G + +L +WDTAGQE F +T +YYRGAQ ++ + RD+F +W ++
Sbjct: 55 KTI-SVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNEL 113
Query: 124 ENECGE--IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
E C I +LV NKID + V E +R + S K V F L
Sbjct: 114 ETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172
Query: 182 TTKCLSELRQQEEEYSINGNG 202
K + E E +G
Sbjct: 173 VEKIIQTPGLWESENQNSGPS 193
Score = 71.1 bits (175), Expect = 1e-15
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G + +L +WDTAGQE F +T +YYRGAQ ++ + RD+F +W
Sbjct: 60 DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNW 109
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 114 bits (287), Expect = 3e-32
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 63 KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
E + + L + DTAGQEEF A+ + Y R +I +S D+ SFE +
Sbjct: 55 YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQL 114
Query: 123 VEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED-INVNSIFR 179
+ + P +LV NK+DL+ V ++ ++ + TS K+ +NV+ F
Sbjct: 115 ILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 180 YL 181
L
Sbjct: 175 DL 176
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 114 bits (288), Expect = 3e-32
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
R + G+ V+L +WDTAGQE F ++T++YYRGA ++ + R+++ + +W
Sbjct: 65 RVV-NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA 123
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
I +L NK DL + V EA ++ + TS NV F
Sbjct: 124 RTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 183
Query: 183 TKCLSELRQQE 193
L+++ E
Sbjct: 184 RTILNKIDSGE 194
Score = 71.5 bits (176), Expect = 7e-16
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+ V+L +WDTAGQE F ++T++YYRGA ++ + R+++ + +W
Sbjct: 70 GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAW 119
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 114 bits (287), Expect = 3e-32
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
S ++ + +GE L + DTAGQEE+ A+ Y R + + F+ + SF + +
Sbjct: 56 DSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLY 114
Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
+ +++ + ++P VLV NK D L V ++A L+++ G + TS K V
Sbjct: 115 REQIKRVKDSDDVPMVLVGNKCD-LPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA 173
Query: 178 FRYLTTKCLSELRQQEEE 195
F L + E+RQ +
Sbjct: 174 FYTL----VREIRQYRMK 187
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 114 bits (287), Expect = 3e-32
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
RT+ V+ +WDTAG E + AIT AYYRGA ++ F ++ W ++
Sbjct: 65 RTV-MLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL 123
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ I +LV NK DL V EEA + + G + TS + NV F +
Sbjct: 124 YDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 183
Query: 183 TKCLSELRQQ 192
+ +++ +Q
Sbjct: 184 KEIFAKVSKQ 193
Score = 71.1 bits (175), Expect = 1e-15
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAG E + AIT AYYRGA ++ F ++ W
Sbjct: 70 GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERW 119
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 114 bits (287), Expect = 3e-32
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ + V+L +WDTAGQE + IT AYYRGA ++ + + +SF A W ++
Sbjct: 63 KTV-YRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI 121
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ + +LV NK D+ ++ VV E+ LL+ LG S KE+I+V F L
Sbjct: 122 KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181
Query: 183 TKCLSELRQ 191
++
Sbjct: 182 DAICDKMSD 190
Score = 70.0 bits (172), Expect = 3e-15
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+ V+L +WDTAGQE + IT AYYRGA ++ + + +SF A W
Sbjct: 68 HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW 117
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 114 bits (288), Expect = 4e-32
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ + G++V+L LWDTAGQE F IT AYYRGA ++ + D +F W V
Sbjct: 60 KTV-DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV 118
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ +LV NK D ++ VV ++ + L++ LG + +S K D NVN IF L
Sbjct: 119 NEHANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177
Query: 183 TKCLSELRQQEEEYSINGNG 202
++ + NG
Sbjct: 178 KLIQEKIDSNKLVGVGNGKE 197
Score = 70.4 bits (173), Expect = 3e-15
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G++V+L LWDTAGQE F IT AYYRGA ++ + D +F W
Sbjct: 65 NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW 114
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 113 bits (285), Expect = 4e-32
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ + + E + ++WDTAG E F A+ YYRG+ A +I + ++F +W ++
Sbjct: 46 KTV-QYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVREL 104
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
I + NK DL D V +A + ++ + TS K IN+N +F ++
Sbjct: 105 RQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 164
Query: 183 TK 184
+
Sbjct: 165 RR 166
Score = 69.5 bits (171), Expect = 3e-15
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+ E + ++WDTAG E F A+ YYRG+ A +I + ++F +W
Sbjct: 51 QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 100
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 113 bits (285), Expect = 4e-32
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAIT--KAYYRGAQACVITFSTIDRDSFEAAHSWKM 121
RT+ +GE+ L++ DT E+ D ++ +G A VI +S DR SFE+A ++
Sbjct: 43 RTL-TVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRI 101
Query: 122 KVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
++ +P +LV NK DL V+ EE + C+ + TS NV +F
Sbjct: 102 QLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
Query: 180 YLTTKCLSELRQQEEE 195
+ +LR + +
Sbjct: 162 GVVR----QLRLRRRD 173
Score = 64.1 bits (157), Expect = 3e-13
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAIT--KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIK 63
+GE+ L++ DT E+ D ++ +G A VI +S DR SFE+A +++ ++
Sbjct: 47 VDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQ--LR 104
Query: 64 RTIKECE 70
R + +
Sbjct: 105 R-THQAD 110
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 113 bits (284), Expect = 6e-32
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
R I E G++++L +WDTAGQE F A+T++YYRGA ++ + R ++ SW
Sbjct: 55 RII-EVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA 113
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
N +L+ NK DL Q V EEA + G + S K NV F
Sbjct: 114 RNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173
Query: 183 TK 184
K
Sbjct: 174 KK 175
Score = 71.5 bits (176), Expect = 7e-16
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G++++L +WDTAGQE F A+T++YYRGA ++ + R ++ SW
Sbjct: 60 SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 109
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 113 bits (285), Expect = 6e-32
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
R + +G++++L +WDTAGQE F +IT++YYRGA ++ + R++F SW
Sbjct: 61 RMV-NIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA 119
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ +L+ NK DL + V EE + +R G M TS K NV F
Sbjct: 120 RQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA 179
Query: 183 TKCLSELRQ 191
+ +++Q
Sbjct: 180 KEIYRKIQQ 188
Score = 70.3 bits (173), Expect = 2e-15
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G++++L +WDTAGQE F +IT++YYRGA ++ + R++F SW
Sbjct: 66 DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSW 115
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 113 bits (285), Expect = 6e-32
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
R+I + +G+ ++ +WDTAG E + AIT AYYRGA ++ + ++E W ++
Sbjct: 69 RSI-QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 127
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ I +LV NK DL V +EA + G + TS + NV + F+ +
Sbjct: 128 RDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187
Query: 183 TK 184
T+
Sbjct: 188 TE 189
Score = 71.5 bits (176), Expect = 8e-16
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ ++ +WDTAG E + AIT AYYRGA ++ + ++E W
Sbjct: 74 DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 123
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 113 bits (285), Expect = 6e-32
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 2/128 (1%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--EC 127
G+ + L LWDTAG E F ++T A++R A ++ F + SF +W +++
Sbjct: 66 RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS 125
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
VL NK DL DQ V EEA L+ G TS N++ L +
Sbjct: 126 ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185
Query: 188 ELRQQEEE 195
+ + ++
Sbjct: 186 RMERSVDK 193
Score = 70.3 bits (173), Expect = 2e-15
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+ + L LWDTAG E F ++T A++R A ++ F + SF +W
Sbjct: 66 RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNW 115
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 114 bits (287), Expect = 6e-32
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 67 KECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN- 125
+ +V L LWDTAGQE F ++T A++R A ++ F + SF +W +++
Sbjct: 77 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 136
Query: 126 -ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
C VL+ NK DL DQ V +A L+ G TS NV L
Sbjct: 137 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196
Query: 185 CLSELRQQEEEYSINGN 201
+ + Q E+ I
Sbjct: 197 IMKRMEQCVEKTQIPDT 213
Score = 70.1 bits (172), Expect = 4e-15
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+ +V L LWDTAGQE F ++T A++R A ++ F + SF +W
Sbjct: 79 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW 129
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 113 bits (284), Expect = 8e-32
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ V+ +WDTAGQE + ++ YYRGA A +I F ++ SFE A W ++
Sbjct: 52 QTL-AVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL 110
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ + + L NK DLLD V E+A ++ G M TS K NV IF +
Sbjct: 111 QAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170
Query: 183 TK 184
+
Sbjct: 171 RR 172
Score = 70.6 bits (174), Expect = 1e-15
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE + ++ YYRGA A +I F ++ SFE A W
Sbjct: 57 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKW 106
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 111 bits (281), Expect = 2e-31
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ + V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W ++
Sbjct: 46 QTV-CLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ + I L NK DL ++ V +EA + M TS K +NVN IF +
Sbjct: 105 QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
Query: 183 TK 184
K
Sbjct: 165 KK 166
Score = 69.9 bits (172), Expect = 2e-15
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+ V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W
Sbjct: 51 DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 100
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 112 bits (282), Expect = 2e-31
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ +GE L LWDTAGQE F +I K+Y+R A ++ + SF W +
Sbjct: 68 KTL-IVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI 126
Query: 124 ENECGE-IPTVLVQNKIDLLDQS------VVAPEEADLLSRALGCRLMRTSVKEDINVNS 176
E+ E +P +LV NK D+ D + V + L+ G TS K+ N+
Sbjct: 127 EDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE 186
Query: 177 IFRYLTTK 184
+L +
Sbjct: 187 AVLHLARE 194
Score = 72.3 bits (178), Expect = 4e-16
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
+GE L LWDTAGQE F +I K+Y+R A ++ + SF W I
Sbjct: 73 DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW------VDMI 126
Query: 67 KECEGEEVRLML 78
++ E V +ML
Sbjct: 127 EDAAHETVPIML 138
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 111 bits (279), Expect = 3e-31
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
S ++ + E + ++ L + DTAG E+F A+ Y + Q + +S + +F
Sbjct: 38 DSYRKQV-EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96
Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDINVNS 176
+ ++ + ++P +LV NK DL D+ VV E+ L+R C + +S K INVN
Sbjct: 97 REQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNE 156
Query: 177 IFRYL 181
IF L
Sbjct: 157 IFYDL 161
Score = 66.4 bits (163), Expect = 4e-14
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
+ ++ L + DTAG E+F A+ Y + Q + +S + +F + + I R
Sbjct: 46 VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQ--ILR- 102
Query: 66 IKECE 70
+K+ E
Sbjct: 103 VKDTE 107
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 111 bits (279), Expect = 3e-31
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ + G++V+L +WDTAGQE F IT AYYRGA ++ + D +F W V
Sbjct: 43 KTV-DINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV 101
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
+ +LV NK D ++ VV ++ + L++ LG + +S K D NVN IF L
Sbjct: 102 NEHANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160
Query: 183 TKCL 186
Sbjct: 161 KLIQ 164
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 111 bits (280), Expect = 5e-31
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ E +G+ V+L +WDTAGQE F IT++YYR A ++ + R SF + W V
Sbjct: 69 KTL-EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV 127
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRL-MRTSVKEDINVNSIFRYL 181
G I +L+ NK DL + V+ EA L+ + TS K+ NV F +
Sbjct: 128 RKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 187
Query: 182 TTKCL 186
T+ +
Sbjct: 188 ATELI 192
Score = 71.1 bits (175), Expect = 1e-15
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ V+L +WDTAGQE F IT++YYR A ++ + R SF + W
Sbjct: 74 QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHW 123
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 109 bits (276), Expect = 1e-30
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 15/138 (10%)
Query: 63 KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
K+ I +G+ L++ D G E + A V FS D SF+ +++ ++
Sbjct: 57 KKEI-VVDGQSYLLLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLR 110
Query: 123 VEN--ECGEIPTVLVQNKIDLLDQS--VVAPEEADLLSRALG-CRLMRTSVKEDINVNSI 177
+ + E+P VLV + + + V+ A LS L C T +NV +
Sbjct: 111 LCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170
Query: 178 FRYLTTKCLSELRQQEEE 195
F+ + ++ ++
Sbjct: 171 FQDVA----QKVVALRKK 184
Score = 65.3 bits (160), Expect = 1e-13
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+G+ L++ D G E + A V FS D SF+ +++ +++
Sbjct: 62 VDGQSYLLLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRL 111
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 109 bits (276), Expect = 1e-30
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 11/135 (8%)
Query: 63 KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
+ + V L + DTA + + Y A A ++ +S R SF+++ S+
Sbjct: 59 SSEE-TVDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLEL 116
Query: 123 VENECGE----IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI-NVNSI 177
+ E IP +L+ NK+D+ V E L+ GC S D +V +
Sbjct: 117 LALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV 176
Query: 178 FRYLTTKCLSELRQQ 192
F + E R++
Sbjct: 177 FHEA----VREARRE 187
Score = 66.1 bits (162), Expect = 7e-14
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
+ + V L + DTA + + Y A A ++ +S R SF+++ S+ +
Sbjct: 64 VDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLEL--LALH 120
Query: 66 IKECEGEEVRLML 78
KE + + +L
Sbjct: 121 AKETQ-RSIPALL 132
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 110 bits (276), Expect = 2e-30
Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+T+ E G+++RL +WDTAGQE F++IT AYYR A+ ++ + +++F+ W +
Sbjct: 66 KTV-ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI 124
Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNSIFRYL 181
+ E +LV NK+D + ++ + ++ + G R S K++ NV+ IF L
Sbjct: 125 DKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184
Query: 182 TTKCLSEL 189
L ++
Sbjct: 185 VDDILKKM 192
Score = 70.7 bits (174), Expect = 2e-15
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
G+++RL +WDTAGQE F++IT AYYR A+ ++ + +++F+ W
Sbjct: 71 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKW 120
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 109 bits (274), Expect = 2e-30
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE-----NECG 128
+ +WDTAGQE F ++ A+YRGA CV+ + + SFE SW+ + N
Sbjct: 58 ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPE 117
Query: 129 EIPTVLVQNKIDLLDQS-VVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRYLTTKCL 186
P V++ NKID + +V+ + A L+++LG L TS K INV++ F + L
Sbjct: 118 TFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
Score = 71.8 bits (177), Expect = 4e-16
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 57
+ +WDTAGQE F ++ A+YRGA CV+ + + SFE SW+
Sbjct: 58 ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWR 104
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 110 bits (276), Expect = 3e-30
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 64 RTIKECEGEEVRLML---WDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 120
RT+ +GE ++L W+ G+ E+ + + A +I +S DR SFE A +
Sbjct: 78 RTL-MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELR 134
Query: 121 MKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
+++ +IP +LV NK DL+ V+ E + C+ + TS NV +F
Sbjct: 135 IQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194
Query: 179 RYLTTKCLSELRQQEEE 195
+ + ++R + +
Sbjct: 195 EGI----VRQVRLRRDS 207
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 109 bits (274), Expect = 3e-30
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEF-DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
R + + +GE +++ LWDTAGQE F ++ + YYR A V + + SF + +W +
Sbjct: 60 RAV-DIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEE 118
Query: 123 VEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK---EDINVNSI 177
+ +IP +LV NK DL V + A + L TS K ++ +V +I
Sbjct: 119 CKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI 178
Query: 178 FRYLTTK 184
F L K
Sbjct: 179 FMTLAHK 185
Score = 69.9 bits (172), Expect = 3e-15
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 7 EGEEVRLMLWDTAGQEEF-DAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+GE +++ LWDTAGQE F ++ + YYR A V + + SF + +W
Sbjct: 65 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAW 115
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 109 bits (274), Expect = 5e-30
Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 9/141 (6%)
Query: 64 RTIKECEGEEVRLMLW--DTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW-- 119
+ V + L+ DTAG + + Y+ G ++ F +SFE+ +W
Sbjct: 62 APV-TIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFE 120
Query: 120 --KMKVENECGEIPTVLVQNKIDLLDQ-SVVAPEEADLLSRALGCRLMRTSVKED-INVN 175
K + + VLV NK DL Q V + A + S + +
Sbjct: 121 LLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDAD 180
Query: 176 SIFRYLTTKCLSELRQQEEEY 196
+ F + T + +
Sbjct: 181 APFLSIATTFYRNYEDKVAAF 201
Score = 68.1 bits (167), Expect = 2e-14
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 7 EGEEVRLMLW--DTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKR 64
V + L+ DTAG + + Y+ G ++ F +SFE+ +W + +
Sbjct: 67 PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELL---K 123
Query: 65 TIKECEGEEVRLML 78
+ + +R +L
Sbjct: 124 SARPDRERPLRAVL 137
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 108 bits (272), Expect = 5e-30
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+ + E +G V + +WDTAGQE F ++ +YRG+ C++TFS D SF+ +WK +
Sbjct: 47 KDL-EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 105
Query: 124 EN-----ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSI 177
E P V++ NKID + + V+ EEA R G TS K+ NV +
Sbjct: 106 IYYADVKEPESFPFVILGNKID-ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA 164
Query: 178 FRYLTTKCLS 187
F + L+
Sbjct: 165 FEEAVRRVLA 174
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 107 bits (269), Expect = 2e-29
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
+ + + E V + + DTAGQE+ + + R + V+ + DR SFE
Sbjct: 63 STYRHQA-TIDDEVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPL 120
Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED-INVNS 176
K ++ + + +LV NK DL V+ EE + L+ L C S N+
Sbjct: 121 KNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITE 180
Query: 177 IFRYLTTKCLSELRQQEEE 195
IF L E+R++
Sbjct: 181 IFYEL----CREVRRRRMV 195
Score = 61.5 bits (150), Expect = 4e-12
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
+ E V + + DTAGQE+ + + R + V+ + DR SFE K +
Sbjct: 71 IDDEVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNI--LDE- 126
Query: 66 IKECE 70
IK+ +
Sbjct: 127 IKKPK 131
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 106 bits (267), Expect = 2e-29
Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 13/141 (9%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
K+ + +G+ +++ + AG + + A A + FS D +SF+A
Sbjct: 41 EQYKKEM-LVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRL 94
Query: 120 KMKVEN----ECGEIPTVLV--QNKIDLLDQSVVAPEEA-DLLSRALGCRLMRTSVKEDI 172
++ + G + LV Q++I VV A L + C T +
Sbjct: 95 HGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL 154
Query: 173 NVNSIFRYLTTKCLSELRQQE 193
NV+ +F+ + K ++ +QQ+
Sbjct: 155 NVDRVFQEVAQKVVTLRKQQQ 175
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 102 bits (257), Expect = 1e-27
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 43 STIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102
+ + + + ++ + ++ +WDTAGQE + +I YYRGA +
Sbjct: 62 NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121
Query: 103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCR 162
+ F + ++ + A +W + +LV NKID ++ V E ++
Sbjct: 122 VVFDISNSNTLDRAKTW-VNQLKISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLL 179
Query: 163 LMRTSVKEDINVNSIFRYLTTK 184
++TS K N+ +IF L +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEE 201
Score = 69.1 bits (169), Expect = 7e-15
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
++ +WDTAGQE + +I YYRGA ++ F + ++ + A +W
Sbjct: 89 NLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTW 138
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 100 bits (252), Expect = 4e-27
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 64 RTIKECEGEEVRLML---WDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 120
RT+ +GE ++L W+ G+ E+ + + A +I +S DR SFE A +
Sbjct: 47 RTL-MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELR 103
Query: 121 MKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
+++ +IP +LV NK DL+ V+ E + + + TS NV +F
Sbjct: 104 IQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
Query: 179 RYLTTKCLSELRQQEEEYSING 200
+ ++R + + N
Sbjct: 164 EGIVR----QVRLRRDSKEKNE 181
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 99.3 bits (248), Expect = 2e-26
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENE 126
+ + EE L LWDTAGQEE+D + Y + ++ F+ +R SF+ + W+ ++++
Sbjct: 65 KYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY 124
Query: 127 CGEIPTVLVQNKIDLLD--QSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRYLTT 183
TVLV K+DL V +E D L + LGC + S I +N +F
Sbjct: 125 IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184
Query: 184 KCLS 187
S
Sbjct: 185 CIFS 188
Score = 62.4 bits (152), Expect = 2e-12
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+ EE L LWDTAGQEE+D + Y + ++ F+ +R SF+
Sbjct: 67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 111
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 102 bits (255), Expect = 1e-25
Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 3/144 (2%)
Query: 52 AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 111
K +IK + E +E WD GQE A + + + ++ D
Sbjct: 76 LNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSR 132
Query: 112 SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED 171
+ H W +E G+ P ++V NKID + ++ + A+ R R S K
Sbjct: 133 TDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192
Query: 172 INVNSIFRYLTTKCLSELRQQEEE 195
V SI + L + L
Sbjct: 193 DGVESIAKSLKSAVLHPDSIYGTP 216
Score = 60.4 bits (146), Expect = 5e-11
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
E +E WD GQE A + + + ++ D + H W
Sbjct: 94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSRTDSNKHYW 140
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 95.2 bits (237), Expect = 4e-25
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
+ + V+ +WDTAGQE F ++ YYR AQA ++ + SF A W ++
Sbjct: 43 QRV-TINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKEL 101
Query: 124 ENECGE-IPTVLVQNKIDLL---DQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
+ + I LV NKID L + VA EE + L+ G TS K NVN +F
Sbjct: 102 HEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161
Query: 180 YLTTK 184
+ K
Sbjct: 162 GIGEK 166
Score = 64.0 bits (156), Expect = 3e-13
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
V+ +WDTAGQE F ++ YYR AQA ++ + SF A W
Sbjct: 48 NEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHW 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 94.0 bits (234), Expect = 2e-24
Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 10/139 (7%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS-FEAAHSWKMKV 123
I++ ++ L +WD AG+EEF + + + + + +A W +
Sbjct: 47 QIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI 106
Query: 124 ENECGEIPTVLVQNKIDLLDQ---SVVAPEEADLLSRALG-----CRLMRTSVKEDINVN 175
+ P +LV +D+ D+ + L G + +E +
Sbjct: 107 KARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALA 166
Query: 176 SIFRYLTTKCLSELRQQEE 194
+ + + + L + +++
Sbjct: 167 KLRKTIINESL-NFKIRDQ 184
Score = 63.5 bits (155), Expect = 6e-13
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS-FEAAHSW 56
++ L +WD AG+EEF + + + + + +A W
Sbjct: 52 RKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPW 102
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 93.2 bits (232), Expect = 6e-24
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
+G+ V L LWDTAGQE++ + YRGA V+ FS I + S+E W ++
Sbjct: 53 DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP 112
Query: 129 EIPTVLVQNKIDLLD--------QSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFR 179
+P VLV K+DL D +V+ + + L + +G + S K NV ++F
Sbjct: 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFD 172
Query: 180 YLTTKCLSELRQQE 193
L R++E
Sbjct: 173 TAIKVVLQPPRRKE 186
Score = 59.3 bits (144), Expect = 4e-11
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G+ V L LWDTAGQE++ + YRGA V+ FS I + S+E
Sbjct: 53 DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYE 97
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 91.3 bits (227), Expect = 2e-23
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMK 122
G V L LWDTAGQE+++ + YRGA ++ FS I + S+E + W +
Sbjct: 46 SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE 105
Query: 123 VENECGEIPTVLVQNKIDLLD----------QSVVAPEEADLLSRALGCRL-MRTSVKED 171
+++ +P VLV K+DL D + + + L + +G + S K
Sbjct: 106 LKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQ 165
Query: 172 INVNSIF 178
NV +F
Sbjct: 166 ENVKGVF 172
Score = 61.2 bits (149), Expect = 4e-12
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
G V L LWDTAGQE+++ + YRGA ++ FS I + S+E
Sbjct: 52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 96
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 90.6 bits (225), Expect = 6e-23
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKV 123
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V
Sbjct: 64 ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV 123
Query: 124 ENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKE 170
++ C +P +LV NK DL Q V EE ++ + + S K
Sbjct: 124 KHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKT 183
Query: 171 DINVNSIF 178
V +F
Sbjct: 184 KEGVREVF 191
Score = 60.1 bits (146), Expect = 1e-11
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+ +G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 65 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 89.9 bits (223), Expect = 1e-22
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 14/138 (10%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMK 122
G++ L L+DTAGQE++D + Y +I FS ++ SF+ W +
Sbjct: 56 AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 115
Query: 123 VENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALG-CRLMRTSVK 169
++ +P +L+ +IDL D + + E+ L++ +G C + S
Sbjct: 116 LKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175
Query: 170 EDINVNSIFRYLTTKCLS 187
+ ++F L+
Sbjct: 176 TQKGLKTVFDEAIIAILT 193
Score = 58.7 bits (142), Expect = 4e-11
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 2 INRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
++ G++ L L+DTAGQE++D + Y +I FS ++ SF+
Sbjct: 57 VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ 106
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 89.8 bits (223), Expect = 1e-22
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMK 122
+G+ V L LWDTAGQE++D + Y +I FS + SFE + W +
Sbjct: 68 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE 127
Query: 123 VENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVK 169
V + C P +LV K+DL D + + + +++ +G + + S
Sbjct: 128 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187
Query: 170 EDINVNSIF 178
+ ++F
Sbjct: 188 TQRGLKTVF 196
Score = 60.6 bits (147), Expect = 1e-11
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ V L LWDTAGQE++D + Y +I FS + SFE +
Sbjct: 74 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 123
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 89.8 bits (223), Expect = 1e-22
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
+ +G+ V L +WDTAGQ+++D + +Y A ++ F +SF+ + W +V +
Sbjct: 76 QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF 135
Query: 127 CGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKEDIN 173
C ++P ++V K DL V ++R++G + S + N
Sbjct: 136 CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN 195
Query: 174 VNSIFRYLTTKCLS 187
V+++F+ LS
Sbjct: 196 VHAVFQEAAEVALS 209
Score = 60.9 bits (148), Expect = 9e-12
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G+ V L +WDTAGQ+++D + +Y A ++ F +SF+
Sbjct: 78 KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD 122
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 89.4 bits (222), Expect = 2e-22
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
E +G++V L LWDTAGQE++D + Y ++ FS DS E W +V++
Sbjct: 67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF 126
Query: 127 CGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKEDIN 173
C +P +LV NK DL Q V ++ ++ + + S K
Sbjct: 127 CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186
Query: 174 VNSIF 178
V +F
Sbjct: 187 VREVF 191
Score = 59.0 bits (143), Expect = 3e-11
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G++V L LWDTAGQE++D + Y ++ FS DS E
Sbjct: 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLE 113
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 89.0 bits (221), Expect = 2e-22
Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMK 122
+ +G VRL L DTAGQ+EFD + Y ++ FS + SF+ W +
Sbjct: 58 SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPE 117
Query: 123 VENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVK 169
+ C + P +LV + DL + + V E A LL+ + + S
Sbjct: 118 IRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL 177
Query: 170 EDINVNSIFRYLTTKCLSELRQQE 193
N+ +F + Q+
Sbjct: 178 TQKNLKEVFDAAIVAGIQYSDTQQ 201
Score = 57.4 bits (139), Expect = 1e-10
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G VRL L DTAGQ+EFD + Y ++ FS + SF+
Sbjct: 64 DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQ 108
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 86.7 bits (215), Expect = 1e-21
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 18/162 (11%)
Query: 40 ITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99
I+++T ++F + + +G+ V L LWDTAGQE++D + Y
Sbjct: 23 ISYTT---NAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 78
Query: 100 ACVITFSTIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLD------------QSV 146
+I FS + SFE + W +V + C P +LV K+DL D +
Sbjct: 79 VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP 138
Query: 147 VAPEEADLLSRALG-CRLMRTSVKEDINVNSIFRYLTTKCLS 187
+ + +++ +G + + S + ++F L
Sbjct: 139 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180
Score = 57.8 bits (140), Expect = 7e-11
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+G+ V L LWDTAGQE++D + Y +I FS + SFE +
Sbjct: 49 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAK 98
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 87.2 bits (216), Expect = 1e-21
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKV 123
E E + V L LWDT+G +D + Y + A ++ F ++ ++A W+ ++
Sbjct: 66 ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 125
Query: 124 ENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGCR--LMRTSVK 169
+ C +L+ K DL Q+ ++ E+ +++ LG L ++
Sbjct: 126 LDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFT 185
Query: 170 EDINVNSIFRYLTTKCLSE 188
+ +++SIFR + CL++
Sbjct: 186 SEKSIHSIFRTASMLCLNK 204
Score = 59.1 bits (143), Expect = 4e-11
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
E + V L LWDT+G +D + Y + A ++ F ++ ++A
Sbjct: 71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKK 120
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 84.8 bits (210), Expect = 7e-21
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 15/139 (10%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKV 123
E + + + L LWDT+G +D + Y + A +I F ++ ++ WK ++
Sbjct: 46 ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 105
Query: 124 ENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGCRL-MRTSVKE 170
+ C +LV K DL Q+ V+ ++ +++ +G + S +
Sbjct: 106 QEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 165
Query: 171 DIN-VNSIFRYLTTKCLSE 188
N V IF T C+++
Sbjct: 166 SENSVRDIFHVATLACVNK 184
Score = 58.9 bits (143), Expect = 3e-11
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+ + + L LWDT+G +D + Y + A +I F ++ +
Sbjct: 51 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 95
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 84.0 bits (208), Expect = 2e-20
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 15/139 (10%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKV 123
E + + + L LWDT+G +D + Y + A +I F ++ ++ WK ++
Sbjct: 67 ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 126
Query: 124 ENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKE 170
+ C +LV K DL Q+ V+ ++ +++ +G + S +
Sbjct: 127 QEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 186
Query: 171 DIN-VNSIFRYLTTKCLSE 188
N V IF T C+++
Sbjct: 187 SENSVRDIFHVATLACVNK 205
Score = 58.6 bits (142), Expect = 5e-11
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+ + + L LWDT+G +D + Y + A +I F ++ +
Sbjct: 72 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 116
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 80.4 bits (198), Expect = 2e-18
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
+G+ V L LWDTAG E++D + Y +I FS + SF W +V +
Sbjct: 197 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH 256
Query: 127 CGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKEDIN 173
C P +LV K+DL D + + + +++ +G + + S
Sbjct: 257 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316
Query: 174 VNSIF 178
+ ++F
Sbjct: 317 LKTVF 321
Score = 54.6 bits (131), Expect = 3e-09
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
+G+ V L LWDTAG E++D + Y +I FS + SF
Sbjct: 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 66.2 bits (161), Expect = 2e-13
Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 9/145 (6%)
Query: 45 IDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104
ID +F+ S ++ IKR +LM + T + + V
Sbjct: 106 IDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDG 165
Query: 105 F------STIDRDSFEAAHSWKMKVENECGE--IPTVLVQNKIDLLDQSVVAPEEADLLS 156
F S +F+ + + N+ + P V+V K D + + LS
Sbjct: 166 FLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS 225
Query: 157 RALGCRLMRTSVKEDINVNSIFRYL 181
+ +++ TS + ++NV+ F L
Sbjct: 226 K-KNLQVVETSARSNVNVDLAFSTL 249
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 59.8 bits (145), Expect = 2e-11
Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 9/134 (6%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE 124
I E +G + R L+ GQ ++A K RG V + A S + E
Sbjct: 65 DIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE 124
Query: 125 NECGE------IPTVLVQNKIDLLDQSVVAPEE-ADLLSRALGCRLMRTSVKEDINVNSI 177
N +P V+ NK DL D + E ++ ++ E V
Sbjct: 125 NLAEYGLTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFET 182
Query: 178 FRYLTTKCLSELRQ 191
+ ++ L+ +
Sbjct: 183 LKEVSRLVLARVAG 196
Score = 47.8 bits (114), Expect = 3e-07
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 57
+G + R L+ GQ ++A K RG V + A S +
Sbjct: 69 VKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMR 120
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 42.9 bits (102), Expect = 3e-05
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLS--RALGCRLMRTSVKEDINVNSIFRYLTT 183
E +I ++ K+DL++ R +G + TS K+ ++ I +
Sbjct: 114 EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQD 173
Query: 184 K 184
K
Sbjct: 174 K 174
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 41.5 bits (97), Expect = 8e-05
Identities = 16/142 (11%), Positives = 40/142 (28%), Gaps = 18/142 (12%)
Query: 71 GEEVRLMLWDTAGQEEF-----DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN 125
+ L LWD GQ+ F ++ Q + F + + + ++
Sbjct: 49 LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ 108
Query: 126 ECGEIPTVLVQ---NKIDLLDQSVVAPEEADLLSRAL---------GCRLMRTSVKEDIN 173
P + +K+DL+ ++ TS+ D +
Sbjct: 109 LRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIW-DES 167
Query: 174 VNSIFRYLTTKCLSELRQQEEE 195
+ + + + + +
Sbjct: 168 LYKAWSQIVCSLIPNMSNHQSN 189
Score = 33.0 bits (75), Expect = 0.044
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 2 INRICEGEEVRLMLWDTAGQEEF-----DAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+ + + L LWD GQ+ F ++ Q + F + + +
Sbjct: 43 HSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIF 102
Query: 57 KM 58
Sbjct: 103 AK 104
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 40.7 bits (95), Expect = 9e-05
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 74 VRLMLWDTAGQEEFDAIT---KAYYRGAQACVITFSTIDR--DSFEAAHSWKMKVENECG 128
V +WD GQ +F T + +RG A + D ++ H K
Sbjct: 69 VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP 128
Query: 129 EIPTVLVQNKIDLLDQS 145
++ + +K+D L
Sbjct: 129 DMNFEVFIHKVDGLSDD 145
Score = 30.3 bits (68), Expect = 0.30
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 2 INRICEGEEVRLMLWDTAGQEEFDAIT---KAYYRGAQACVITFSTIDR--DSFEAAHSW 56
+ I V +WD GQ +F T + +RG A + D ++ H
Sbjct: 60 KDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHIT 119
Query: 57 KMK 59
K
Sbjct: 120 VSK 122
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 40.7 bits (96), Expect = 1e-04
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADL-LSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
E ++ ++V NKIDLLD + + + R +G R++ S + + LT +
Sbjct: 157 ETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGR 216
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 39.9 bits (94), Expect = 2e-04
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKV 123
++E R ++WD GQE + YY + ++ + DR+ +KM
Sbjct: 52 VEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 111
Query: 124 ENECGEIPTVLVQNKIDL 141
+ + ++ NK D+
Sbjct: 112 HEDLRKAGLLIFANKQDV 129
Score = 32.6 bits (75), Expect = 0.053
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
R ++WD GQE + YY + ++ + DR+
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT 102
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 39.5 bits (93), Expect = 3e-04
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADL-LSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
E ++ V+V NKIDLL++ E + + R G +++ S K ++ + YL
Sbjct: 107 EYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGF 166
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 38.7 bits (91), Expect = 3e-04
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGEIP 131
+ +WD GQ++ + + Y++ Q + + DR+ A +M E+E +
Sbjct: 44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 103
Query: 132 TVLVQNKIDL 141
++ NK DL
Sbjct: 104 LLVFANKQDL 113
Score = 31.8 bits (73), Expect = 0.084
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ +WD GQ++ + + Y++ Q + + DR+ A
Sbjct: 44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 86
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 38.8 bits (91), Expect = 4e-04
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKV 123
++ + + + +WD GQ + Y+ A + + DRD A + +
Sbjct: 58 LETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLD 117
Query: 124 ENECGEIPTVLVQNKIDL 141
E+E + ++ NK DL
Sbjct: 118 EDELRKSLLLIFANKQDL 135
Score = 32.6 bits (75), Expect = 0.054
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ +WD GQ + Y+ A + + DRD A
Sbjct: 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVA 108
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 38.8 bits (91), Expect = 4e-04
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGEIP 131
+ +WD GQ++ + + Y++ Q + + DR+ + + KM E+E +
Sbjct: 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132
Query: 132 TVLVQNKIDL 141
++ NK D+
Sbjct: 133 LLVFANKQDM 142
Score = 31.5 bits (72), Expect = 0.12
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ +WD GQ++ + + Y++ Q + + DR+ + +
Sbjct: 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQES 115
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 38.8 bits (91), Expect = 4e-04
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKV 123
++ + ++L +WD GQ + YY A + + D+D A M
Sbjct: 54 VETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQ 113
Query: 124 ENECGEIPTVLVQNKIDL 141
E E + ++ NK D
Sbjct: 114 EEELQDAALLVFANKQDQ 131
Score = 32.2 bits (74), Expect = 0.072
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
++L +WD GQ + YY A + + D+D A
Sbjct: 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA 104
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 38.3 bits (90), Expect = 5e-04
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKV 123
++ + ++ +WD G + YY A + + DRD + S M
Sbjct: 43 VETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLE 102
Query: 124 ENECGEIPTVLVQNKIDL 141
E E + V+ NK D+
Sbjct: 103 EEELRKAILVVFANKQDM 120
Score = 31.0 bits (71), Expect = 0.16
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
++ +WD G + YY A + + DRD +
Sbjct: 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGIS 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 37.6 bits (88), Expect = 0.001
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGEIP 131
R ++WD GQE + YY + ++ + DR+ +KM + +
Sbjct: 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 124
Query: 132 TVLVQNKIDL 141
++ NK D+
Sbjct: 125 LLIFANKQDV 134
Score = 31.1 bits (71), Expect = 0.14
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
R ++WD GQE + YY + ++ + DR+
Sbjct: 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 39/227 (17%), Positives = 72/227 (31%), Gaps = 78/227 (34%)
Query: 8 GEEV-----RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS----FEAAHSWKM 58
G ++ +L+ + + + K Y A ++ D+ S F A
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYI---TARIMAKRPFDKKSNSALFRAVGE--- 151
Query: 59 KVSIKRTIKECEGEEVRLMLWDTA---GQ---EE-FDAITKAY--YRGAQACVI-----T 104
+L+ A GQ ++ F+ + Y Y +I T
Sbjct: 152 -------------GNAQLV----AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 105 FSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL---LDQSVVAPEEADLLSRALGC 161
S + R + +A + +++ L+ P++ LLS + C
Sbjct: 195 LSELIRTTLDA----------------EKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 162 RLMRTSVKEDINVNSIFRYLTT-KCL----SELRQQEEEYSINGNGL 203
L I V + Y+ T K L ELR + + + GL
Sbjct: 239 PL--------IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Score = 30.8 bits (69), Expect = 0.35
Identities = 19/135 (14%), Positives = 33/135 (24%), Gaps = 47/135 (34%)
Query: 15 LWDTAGQEEFDA----ITK----------AYYRGAQACVIT--FSTIDRDSFEAAHSWKM 58
+W+ A D I ++ G + I +S + ++
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 59 KV--SIKRTIKEC--EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS-------- 106
K+ I E+ L T +F Q +
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSA--T----QF----------TQPALTLMEKAAFEDLK 1748
Query: 107 ---TIDRDSFEAAHS 118
I D+ A HS
Sbjct: 1749 SKGLIPADATFAGHS 1763
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 37.2 bits (87), Expect = 0.001
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKV 123
+++ V + LWD GQ F ++ + Y RG A V D++ EA+ + +
Sbjct: 59 MRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLD 118
Query: 124 ENECGEIPTVLVQNKIDL 141
+ + IP +++ NK DL
Sbjct: 119 KPQLQGIPVLVLGNKRDL 136
Score = 30.6 bits (70), Expect = 0.24
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS 55
V + LWD GQ F ++ + Y RG A V D++ EA+ +
Sbjct: 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 111
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 37.5 bits (88), Expect = 0.002
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
E E+ TV+V NK+DL D+ + + +++TS K + + + YL K
Sbjct: 112 EKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 36.8 bits (86), Expect = 0.002
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKV 123
IK E +L +WD GQ+ + + Y+ + + DR + + V
Sbjct: 54 IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLV 113
Query: 124 ENECGEIPTVLVQNKIDL 141
E ++ NK DL
Sbjct: 114 EERLAGATLLIFANKQDL 131
Score = 30.3 bits (69), Expect = 0.27
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+L +WD GQ+ + + Y+ + + DR +
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDC 104
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 36.4 bits (85), Expect = 0.002
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGEIP 131
+L +WD GQ + ++Y+ + + DR FE ++ E + +P
Sbjct: 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP 119
Query: 132 TVLVQNKIDL 141
++ NK DL
Sbjct: 120 VLIFANKQDL 129
Score = 29.9 bits (68), Expect = 0.37
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+L +WD GQ + ++Y+ + + DR FE
Sbjct: 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 102
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 36.5 bits (85), Expect = 0.002
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---ENECGEI 130
+ ++D +GQ + + + YY+ QA + + DR A + +
Sbjct: 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRR 126
Query: 131 PTVLV-QNKIDL 141
+L NK+DL
Sbjct: 127 IPILFFANKMDL 138
Score = 31.9 bits (73), Expect = 0.10
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ ++D +GQ + + + YY+ QA + + DR A
Sbjct: 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVA 109
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 36.5 bits (85), Expect = 0.002
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMK 122
T +E + +D G + + K Y V D + + +
Sbjct: 60 TSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLM 119
Query: 123 VENECGEIPTVLVQNKIDL 141
+ +P +++ NKID
Sbjct: 120 TDETIANVPILILGNKIDR 138
Score = 29.2 bits (66), Expect = 0.64
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
+ +D G + + K Y V D + +
Sbjct: 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLES 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.003
Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 49/210 (23%)
Query: 13 LML---WDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK----VSIKRT 65
L+L + F+ +C I +T + + + T
Sbjct: 248 LVLLNVQNAKAWNAFNL----------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI------TFSTIDRDSFEAAHSW 119
+ E + + L+ + D + + RD +W
Sbjct: 298 LTPDEVKSL-LLKY--LDCRPQDL-------PREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 120 KMKVENECGEIPTVLVQNKIDLLDQS---------VVAPEEADLLSRALGCRLMRTSVKE 170
K ++ I +++ +++L+ + V P A + + L + +K
Sbjct: 348 KHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-SLIWFDVIKS 402
Query: 171 DINVNSIFRYLTTKCLSELRQQEEEYSING 200
D V + L L E + +E SI
Sbjct: 403 D--VMVVVNKLHKYSLVEKQPKESTISIPS 430
Score = 31.0 bits (69), Expect = 0.29
Identities = 21/159 (13%), Positives = 51/159 (32%), Gaps = 49/159 (30%)
Query: 43 STIDRDSFEAAHSWKMKVSIKRTIKECEGEEVR-------------------L-MLWDTA 82
+T D ++ + K+ I+ ++ E E R L ++W
Sbjct: 342 ATWDN--WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 83 GQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL 142
+ + + ++ +S +++ E+ S IP++ L
Sbjct: 400 IKSDVMVVVNKLHK--------YSLVEKQPKESTIS-----------IPSI-------YL 433
Query: 143 DQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRY 180
+ V E L + + +T +D+ + +Y
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 36.6 bits (84), Expect = 0.004
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 73 EVRLMLWDTAGQEEFDA---ITKAYYRGAQA--CVITFSTIDRDSFEAAHSWKMKVENEC 127
+ L + + GQ + ++ ++ A VI ++
Sbjct: 45 LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN 104
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRA 158
I ++ +K+D L + + D++ R
Sbjct: 105 PSINIEVLIHKVDGLSEDFKVDAQRDIMQRT 135
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 35.2 bits (81), Expect = 0.011
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGEIP 131
+ +WD GQ++ + + Y++ Q + + DR+ A +M E+E +
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 268
Query: 132 TVLVQNKIDL 141
++ NK DL
Sbjct: 269 LLVFANKQDL 278
Score = 29.1 bits (65), Expect = 0.98
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH 54
+ +WD GQ++ + + Y++ Q + + DR+ A
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR 252
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 35.0 bits (81), Expect = 0.012
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
EIP V+V NKID+L + A E L +++ S + + I K +SE
Sbjct: 140 EIPFVVVVNKIDVLGEK--AEELKGLYESRYEAKVLLVSALQKKGFDDIG-----KTISE 192
Query: 189 LRQQEEEYSING 200
+ +EE G
Sbjct: 193 ILPGDEEIPYLG 204
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 34.5 bits (80), Expect = 0.012
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF---STIDRDSFEAAHS--W 119
T +E ++ +D G + + K Y+ V F + D + F+ A
Sbjct: 58 TSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIV--FLVDAA-DPERFDEARVELD 114
Query: 120 KMKVENECGEIPTVLVQNKIDL 141
+ E ++P V++ NKID
Sbjct: 115 ALFNIAELKDVPFVILGNKIDA 136
Score = 28.3 bits (64), Expect = 1.5
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITF---STIDRDSFEAA 53
++ +D G + + K Y+ V F + D + F+ A
Sbjct: 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIV--FLVDAA-DPERFDEA 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 34.1 bits (78), Expect = 0.026
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKV 123
++ + V+ +WD GQ++ + + YY G Q + DRD + A ++
Sbjct: 358 VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN 417
Query: 124 ENECGEIPTVLVQNKIDL 141
+ E + ++ NK DL
Sbjct: 418 DREMRDAIILIFANKQDL 435
Score = 29.1 bits (65), Expect = 1.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
V+ +WD GQ++ + + YY G Q + DRD + A
Sbjct: 366 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA 408
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 33.7 bits (77), Expect = 0.028
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC 161
+ S E +V E ++P ++V NKID+ D+ + E + + G
Sbjct: 253 IFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFV--KEKGL 310
Query: 162 RLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEE 195
++ S + ++ + + K L L ++
Sbjct: 311 NPIKISALKGTGIDLV-KEEIIKTLRPLAEKVAR 343
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 33.0 bits (75), Expect = 0.048
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 111 DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD---LLSRALGCRLMR-- 165
D F+ S+ + + P +LV NK DLL +SV P+ ++ LG +
Sbjct: 80 DIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVC 139
Query: 166 -TSVKEDINVNSIFRYL 181
S + I + + +
Sbjct: 140 LVSAAKGIGMAKVMEAI 156
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 32.8 bits (75), Expect = 0.052
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEF-DAITKAYYRGAQAC--VITFSTIDRDSFEAA---HS 118
K L L D G E + + A+A V+ + R+ + A +
Sbjct: 45 IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQ 104
Query: 119 WKMKVENECGEIPTVLV-QNKIDLLD 143
+ P++L+ NK D+
Sbjct: 105 -VLIDSMALKNSPSLLIACNKQDIAM 129
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 32.6 bits (74), Expect = 0.078
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 111 DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV 146
D F+ SW + G +LV NK DL+ +SV
Sbjct: 78 DIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSV 113
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 32.5 bits (75), Expect = 0.089
Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 22/147 (14%)
Query: 65 TIKEC---EGEEVRLMLWDTAG--QEEFDAI-------TKAYYRGAQACVITFSTIDRDS 112
I E G R++ DTAG E D + T A + D+
Sbjct: 281 VISEEIVIRGILFRIV--DTAGVRSETNDLVERLGIERTLQEIEKADIVLFVL-----DA 333
Query: 113 FEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
K+ ++V NK+D++++ EE +++ S +
Sbjct: 334 SSPLDEEDRKILERIKNKRYLVVINKVDVVEK---INEEEIKNKLGTDRHMVKISALKGE 390
Query: 173 NVNSIFRYLTTKCLSELRQQEEEYSIN 199
+ + + + + + N
Sbjct: 391 GLEKLEESIYRETQEIFERGSDSLITN 417
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 31.7 bits (72), Expect = 0.13
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 13/92 (14%)
Query: 65 TIKECEGEE---VRLMLWDTAGQEEFDAITKAYYRGAQACV--ITF---STIDRDSFEAA 116
+ + + + L D G + Y + V + F ST+D
Sbjct: 43 SQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT 102
Query: 117 ----HSWKMKVENECGEIPTVLVQ-NKIDLLD 143
E+ C +L+ NK +L
Sbjct: 103 AEFLVDILSITESSCENGIDILIACNKSELFT 134
Score = 26.6 bits (59), Expect = 5.2
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV--ITF---STIDRDSFEAA 53
+ + + L D G + Y + V + F ST+D
Sbjct: 47 LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT 102
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 31.2 bits (71), Expect = 0.13
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV--ITF---STIDRDSFEAAHSWK 120
+ + + + L D G + Y + V + F ST+D +
Sbjct: 83 LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFL 142
Query: 121 MKV----ENECGEIPTVLVQ-NKIDLLD 143
+ + E+ C +L+ NK +L
Sbjct: 143 VDILSITESSCENGIDILIACNKSELFT 170
Score = 26.6 bits (59), Expect = 4.8
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 3 NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV--ITF---STIDRDSFEAA 53
+ + + L D G + Y + V + F ST+D
Sbjct: 83 LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT 138
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.23
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 5/22 (22%)
Query: 63 KRTIKECEGEEVRLMLW--DTA 82
K+ +K+ + L L+ D+A
Sbjct: 19 KQALKKLQA---SLKLYADDSA 37
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 30.2 bits (69), Expect = 0.28
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 65 TIKEC---EGEEVRLMLWDTAG-QEEFDA-----ITKAYYRGAQACVITFSTID---RDS 112
++E +G + ++ DTAG +E D I +A+ QA + F +D D+
Sbjct: 42 VLREHIHIDGMPLHII--DTAGLREASDEVERIGIERAWQEIEQADRVLF-MVDGTTTDA 98
Query: 113 FEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
+ A W + ++P +V+NK D+ E +S G L+R S +
Sbjct: 99 VDPAEIWPEFIARLPAKLPITVVRNKADI-------TGETLGMSEVNGHALIRLSARTGE 151
Query: 173 NV 174
V
Sbjct: 152 GV 153
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 30.5 bits (69), Expect = 0.30
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-----GCRLMRTSVKEDINVNS 176
+++ V+ NKID + ++ + L+ + L + S + V
Sbjct: 135 SIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQ 194
Query: 177 IFRYLTTKCLSELRQQEEEYS 197
+ + L + +
Sbjct: 195 A-KITACELLKNDQAESILLD 214
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 30.7 bits (70), Expect = 0.34
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 124 ENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153
E P ++ NKID ++ + +
Sbjct: 287 EIGVSGKPILVTLNKIDKINGDLYKKLDLV 316
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 30.2 bits (69), Expect = 0.52
Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
+ P +LV NKIDL+++ L +++ T+ + ++S+ +
Sbjct: 326 EQVKHRPLILVMNKIDLVEK----QLITSLEYPENITQIVHTAAAQKQGIDSLETAILEI 381
Query: 185 CLS-ELRQQEEEYSIN 199
+ +++ + + +IN
Sbjct: 382 VQTGKVQAADMDLAIN 397
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 29.8 bits (68), Expect = 0.64
Identities = 7/79 (8%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
+++ + V NK+D A ++ G ++ S ++++ +++
Sbjct: 336 ELKAAHPAAKFLTVANKLDRAAN---ADALIRAIADGTGTEVIGISALNGDGIDTLKQHM 392
Query: 182 TTKCLS-ELRQQEEEYSIN 199
+ + + +
Sbjct: 393 GDLVKNLDKLHEASVLVTS 411
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 28.2 bits (64), Expect = 1.7
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 122 KVENECGEIPTVLVQNKIDLLDQ 144
++ G++P +LV NK+D
Sbjct: 110 ALKPLVGKVPILLVGNKLDAAKY 132
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 27.8 bits (62), Expect = 2.2
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 15/96 (15%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKE 68
+ + + T E+ A+ ++ ++ +M + ++KE
Sbjct: 20 NDNIINIMKTFAPPEWMALKDGVLSKT----LSI----KEGVG-----RMFGLLPSSLKE 66
Query: 69 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104
V G EF + VI+
Sbjct: 67 EITSFVLEDAKIREGFREF--VAFINEHEIPFYVIS 100
>3qph_A TRMB, A global transcription regulator; transcriptional regulator;
HET: SUC; 2.99A {Pyrococcus furiosus}
Length = 342
Score = 27.8 bits (61), Expect = 2.4
Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 62 IKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 121
+ ++ + EV ++ + + + K RG + D F+ ++ +
Sbjct: 124 FRESLYSAK-NEVIVVTPSEFFETIREDLIKTLERGVTVSLYIDKIPDLSEFKGKGNFFV 182
Query: 122 KV 123
+
Sbjct: 183 RQ 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 27.5 bits (62), Expect = 3.3
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 131 PTVLVQNKIDLLDQSVVAPEEADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKCLS 187
P+++ NK+DLL+ E L+ AL G ++ S + ++ L +
Sbjct: 271 PSLVALNKVDLLE-----EEAVKALADALAREGLAVLPVSALTGAGLPALKEALHAL-VR 324
Query: 188 ELRQQEEE 195
E
Sbjct: 325 STPPPEMP 332
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
3dvw_A 3a3t_A
Length = 193
Score = 27.1 bits (59), Expect = 3.6
Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
Query: 49 SFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTI 108
+ H ++ + + K +++ L Q+E + + A +
Sbjct: 33 GYFCPHCAHLEPVLSKHAKSF-KDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVA 91
Query: 109 DRDSFEAAHSWKMKVENECGEIPTVLVQNKID 140
+ F+A + K+K++N + Q D
Sbjct: 92 NSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFD 123
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 26.7 bits (60), Expect = 5.5
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 129 EIPTVLVQNKIDLL-DQSVVAPEEADLLSR 157
P ++V NKID + V P ++ +
Sbjct: 122 NKPVIVVINKIDKIGPAKNVLPLIDEIHKK 151
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 26.3 bits (59), Expect = 6.8
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 129 EIPTVLVQNKIDLLDQ 144
+ P +L NK+D + +
Sbjct: 116 KAPVILAVNKVDNVQE 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 26.4 bits (59), Expect = 7.1
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 131 PTVLVQNKIDLLDQSVVAPEEADLLSRAL--GCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
P ++V NK+D+ + A E + L + S + + + + L
Sbjct: 276 PQIIVANKMDMPE----AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQ-LEN 330
Query: 189 LRQQEEE 195
+
Sbjct: 331 TPEFPLY 337
>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis
PV citri, unknown funct; HET: MSE; 1.90A {Xanthomonas
axonopodis PV} SCOP: c.52.1.33
Length = 182
Score = 26.0 bits (57), Expect = 7.8
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVL 134
LW GQ + + KA R +A VI + +A +W K N G +
Sbjct: 77 DPDLWIDLGQPDESRVRKACNRSREAVVIGYGG------QATETWWKKHANAMGRYRNLR 130
Query: 135 VQNKIDLLDQSVVAPEEADLLSRAL 159
V LD L+ R +
Sbjct: 131 VIE----LDSQATE-ALGALIQRGM 150
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 26.3 bits (59), Expect = 8.3
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 111 DSFEAAHSWKMKVENECGEIPTVLV---QN 137
D+ E A++W+ + G P L+ Q
Sbjct: 525 DANETAYAWRTILARRNGSGPVGLILTRQG 554
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.393
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,240,074
Number of extensions: 184414
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 249
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)