RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2518
(208 letters)
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 87.9 bits (217), Expect = 1e-22
Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 1/145 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
+ F + V E GE+V+L +WDTAGQE F +IT++YYR A A ++T+
Sbjct: 27 QGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYD 86
Query: 107 TIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+SF + + ++ TVLV NKIDL ++ V+ + A+ S A +
Sbjct: 87 ITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLE 146
Query: 166 TSVKEDINVNSIFRYLTTKCLSELR 190
TS KE NV +F L + +SE R
Sbjct: 147 TSAKESDNVEKLFLDLACRLISEAR 171
Score = 52.1 bits (124), Expect = 3e-09
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
GE+V+L +WDTAGQE F +IT++YYR A A ++T+ +SF W
Sbjct: 50 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 99
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 84.4 bits (208), Expect = 2e-21
Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F + + + K E +G+ ++L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 28 EDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 87
Query: 107 TIDRDSF-EAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ SF + + E+ ++ +++ NK D+ D+ V+ E + L+ G + M
Sbjct: 88 ITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFME 147
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEE 195
TS K +INV + F L +++ + ++
Sbjct: 148 TSAKANINVENAFFTLAR----DIKAKMDK 173
Score = 56.7 bits (136), Expect = 6e-11
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+G+ ++L +WDTAGQE F IT AYYRGA ++ + + SF+ +W +
Sbjct: 51 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI 104
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 83.7 bits (206), Expect = 4e-21
Identities = 41/136 (30%), Positives = 65/136 (47%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D F + + + K + G++V+L +WDTAGQE F IT AYYRGA ++ +
Sbjct: 24 EDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYD 83
Query: 107 TIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
D +F W V + +L+ ++ VV ++ + L++ LG + +
Sbjct: 84 ITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIES 143
Query: 167 SVKEDINVNSIFRYLT 182
S K D NVN IF L
Sbjct: 144 SAKNDDNVNEIFFTLA 159
Score = 59.0 bits (142), Expect = 9e-12
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
G++V+L +WDTAGQE F IT AYYRGA ++ + D +F W
Sbjct: 48 GKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFK 98
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 81.5 bits (200), Expect = 4e-20
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 45 IDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104
D + + + + + +G +V+L +WDTAGQE F ++T AYYR A A ++
Sbjct: 27 KDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLL 86
Query: 105 FSTIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVAPEEADLLSRALGCRL 163
+ ++ SF+ +W ++ + L+ NK+D + VV E+ + L++ G
Sbjct: 87 YDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPF 146
Query: 164 MRTSVKEDINVNSIFRYLTTK 184
M TS K +NV+ F + +
Sbjct: 147 METSAKTGLNVDLAFTAIAKE 167
Score = 50.6 bits (120), Expect = 9e-09
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
+G +V+L +WDTAGQE F ++T AYYR A A ++ + ++ SF+ +W
Sbjct: 51 VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLT 103
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 80.3 bits (197), Expect = 8e-20
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 1/139 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
F A + V I E G++++L +WDTAGQE F A+T++YYRGA ++ +
Sbjct: 26 EKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 85
Query: 107 TIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
R ++ S +L+ NK DL Q V EEA + G +
Sbjct: 86 ITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLE 145
Query: 166 TSVKEDINVNSIFRYLTTK 184
S K NV F K
Sbjct: 146 ASAKTGENVEDAFLEAAKK 164
Score = 44.9 bits (105), Expect = 1e-06
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
G++++L +WDTAGQE F A+T++YYRGA ++ + R ++ SW
Sbjct: 49 SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA 102
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 79.1 bits (194), Expect = 4e-19
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 1/150 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D++ + + V K E +G+ V+L +WDTAGQE F IT +YYRG+ +I +
Sbjct: 28 DDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYD 87
Query: 107 TIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
D++SF + + +LV NK DL D+ VV + A + A +
Sbjct: 88 VTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLE 147
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEE 195
TS + NV F + + + QQ
Sbjct: 148 TSALDSTNVEDAFLTMARQIKESMSQQNLN 177
Score = 52.9 bits (126), Expect = 2e-09
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
+ V+L +WDTAGQE F IT +YYRG+ +I + D++SF W
Sbjct: 53 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQ 102
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 77.2 bits (189), Expect = 1e-18
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
R+ F + V + +G+ ++ +WDTAGQE + IT AYYRGA ++ +
Sbjct: 26 RNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 85
Query: 107 TIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
++E W ++ + I +LV NK DL V +EA + +
Sbjct: 86 IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE 145
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQE 193
TS + NV F+ + T+ + Q++
Sbjct: 146 TSALDSTNVEEAFKNILTEIYRIVSQKQ 173
Score = 37.9 bits (87), Expect = 2e-04
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+G+ ++ +WDTAGQE + IT AYYRGA ++ + ++E W ++
Sbjct: 49 DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 102
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 74.1 bits (181), Expect = 2e-17
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 1/141 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
DSF A + + K + ++L +WDTAGQE + IT AYYRGA ++ +
Sbjct: 27 DDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 86
Query: 107 TIDRDSF-EAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ +SF +LV NK D+ D+ VV+ E L+ LG
Sbjct: 87 ITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFE 146
Query: 166 TSVKEDINVNSIFRYLTTKCL 186
S K++INV F L
Sbjct: 147 ASAKDNINVKQTFERLVDVIC 167
Score = 51.8 bits (123), Expect = 4e-09
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
+ ++L +WDTAGQE + IT AYYRGA ++ + + +SF A W
Sbjct: 52 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW 99
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 73.4 bits (179), Expect = 4e-17
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV-- 123
+ +V L LWDTAGQE F ++T A++R A ++ F + SF +W ++
Sbjct: 56 GSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 115
Query: 124 ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183
C VL+ NK DL DQ V +A L+ G TS NV L
Sbjct: 116 NAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLD 175
Query: 184 KCLSELRQQEE 194
+ + Q E
Sbjct: 176 LIMKRMEQCVE 186
Score = 46.4 bits (109), Expect = 3e-07
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
+ +V L LWDTAGQE F ++T A++R A ++ F + SF +W
Sbjct: 60 KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS 111
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 73.4 bits (179), Expect = 5e-17
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
F+ + + V I G+ V+L +WDTAGQE F ++T++YYRGA ++ +
Sbjct: 27 EKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 86
Query: 107 TIDRDSFEAAHSWKMKVENECGEIPT-VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
R+++ A +W + +L NK DL V EA ++ +
Sbjct: 87 ITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLE 146
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQE 193
TS NV F K L+++ E
Sbjct: 147 TSALTGENVEEAFVQCARKILNKIESGE 174
Score = 45.7 bits (107), Expect = 5e-07
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
G+ V+L +WDTAGQE F ++T++YYRGA ++ + R+++ A +W
Sbjct: 49 VGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLT 101
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 70.0 bits (170), Expect = 6e-16
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
DSF+ + + + E +RL LWDTAGQE F ++ +Y R + A V+ +
Sbjct: 22 YDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYD 81
Query: 107 TIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ +SF+ W V E G + LV NK DL D+ V+ EE + ++ L +
Sbjct: 82 ITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIE 141
Query: 166 TSVKEDINVNSIFRYLTTK 184
TS K NV +FR +
Sbjct: 142 TSAKAGYNVKQLFRRVAAA 160
Score = 36.1 bits (82), Expect = 0.001
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 1 MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
E +RL LWDTAGQE F ++ +Y R + A V+ + + +SF+ W
Sbjct: 39 SKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDD- 97
Query: 61 SIKRTIKECEGEEVRLMLWDT 81
++ G +V +ML
Sbjct: 98 -----VRTERGSDVIIMLVGN 113
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 69.9 bits (170), Expect = 7e-16
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
F+ H + V + +G++++L +WDTAGQE F +IT++YYRGA ++ +
Sbjct: 25 DKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 84
Query: 107 TIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
R++F S + ++ + +L+ NK DL + V EE + +R G M
Sbjct: 85 ITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFME 144
Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQ 191
TS K NV F + +++Q
Sbjct: 145 TSAKTACNVEEAFINTAKEIYRKIQQ 170
Score = 33.3 bits (75), Expect = 0.009
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 1 MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
+G++++L +WDTAGQE F +IT++YYRGA ++ + R++F SW
Sbjct: 42 ARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED- 100
Query: 61 SIKRTIKECEGEEVRLML 78
++ + +ML
Sbjct: 101 -----ARQHSSSNMVIML 113
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 66.8 bits (162), Expect = 1e-14
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 1/141 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F+ + + V K +G + +L +WDTAGQE F +T +YYRGAQ ++ +
Sbjct: 29 DDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYD 88
Query: 107 TIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
RD+F +W ++E C ++ + V E +R +
Sbjct: 89 VTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIE 148
Query: 166 TSVKEDINVNSIFRYLTTKCL 186
S K V F L K +
Sbjct: 149 ASAKTCDGVQCAFEELVEKII 169
Score = 44.8 bits (105), Expect = 1e-06
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 12 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
+L +WDTAGQE F +T +YYRGAQ ++ + RD+F +W
Sbjct: 57 KLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLN 103
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 63.0 bits (152), Expect = 3e-13
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 69 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NE 126
+ L + DTAG E+F ++ Y + Q ++ +S +++ SF+ + ++
Sbjct: 46 VDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR 105
Query: 127 CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
++P +LV NK+DL + V+ E L+ GC M TS K V+ +F + +
Sbjct: 106 YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 62.3 bits (150), Expect = 7e-13
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
+ F+ + V E +G V + +WDTAGQE F ++ +YRG+ C++TFS
Sbjct: 28 TNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFS 87
Query: 107 TIDRDSFEAAHSWKMKVE-----NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC 161
D SF+ +WK + E P V++ NKID+ ++ V E
Sbjct: 88 VDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDY 147
Query: 162 RLMRTSVKEDINVNSIFRYLTTKCLS 187
TS K+ NV + F + L+
Sbjct: 148 PYFETSAKDATNVAAAFEEAVRRVLA 173
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 61.5 bits (148), Expect = 9e-13
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
+ F H + S G+ V L +WDTAGQE F A+ YYR + ++ +
Sbjct: 25 ENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYD 84
Query: 107 TIDRDSFEA-AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
D DSF+ + K + EI +V NKIDL + V+ +EA+ + ++G +
Sbjct: 85 ITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYH 144
Query: 166 TSVKEDINVNSIFRYLTTKCL 186
TS K++ + +F L + +
Sbjct: 145 TSAKQNKGIEELFLDLCKRMI 165
Score = 37.2 bits (85), Expect = 5e-04
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 1 MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
G+ V L +WDTAGQE F A+ YYR + ++ + D DSF+ +W
Sbjct: 42 TKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK 99
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 59.7 bits (143), Expect = 4e-12
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 1/139 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
+ F + + + V+ +WDTAGQE + ++ YYRGAQA ++ +
Sbjct: 28 KGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYD 87
Query: 107 TIDRDSF-EAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
+ +SF A + K I L NK DL ++ V +EA + M
Sbjct: 88 ITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFME 147
Query: 166 TSVKEDINVNSIFRYLTTK 184
TS K +NVN IF + K
Sbjct: 148 TSAKTSMNVNEIFMAIAKK 166
Score = 36.9 bits (84), Expect = 5e-04
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 1 MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
+ V+ +WDTAGQE + ++ YYRGAQA ++ + + +SF A +W
Sbjct: 45 TQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 59.3 bits (142), Expect = 6e-12
Identities = 81/140 (57%), Positives = 98/140 (70%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
+ F + + V + E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FS
Sbjct: 24 KGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFS 83
Query: 107 TIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
T DR+SFEA SW+ KV E G+IPT LVQNKIDLLD S + EEA+ L++ L R RT
Sbjct: 84 TTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRT 143
Query: 167 SVKEDINVNSIFRYLTTKCL 186
SVKED+NV+ +F+YL K L
Sbjct: 144 SVKEDLNVSEVFKYLAEKHL 163
Score = 25.8 bits (55), Expect = 2.9
Identities = 41/58 (70%), Positives = 45/58 (77%)
Query: 1 MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA SW+
Sbjct: 41 ERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWRE 98
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 57.0 bits (136), Expect = 5e-11
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 7/151 (4%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
+ F + + ++ S + I +G RL + DTAGQEEF A+ + Y R ++ F+
Sbjct: 28 QSYFVSDYDPTIEDSYTK-ICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFA 86
Query: 107 TIDRDSFEAAHSWKMKVENECGE--IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM 164
DR SF ++ P VLV NK DL Q V EA +
Sbjct: 87 INDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYF 146
Query: 165 RTSVKEDINVNSIFRYLTTKCLSELRQQEEE 195
S K +NV+ F L +R+ +E+
Sbjct: 147 EASAKLRLNVDEAFEQLVR----AVRKYQEQ 173
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 53.5 bits (127), Expect = 1e-09
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
DSF+ + + S + + E + ++WDTAG E F A+ YYRG+ A +I +
Sbjct: 26 EDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYD 85
Query: 107 TIDRDSFEAAHSWKMKVENECGEIPTVLVQ-NKIDLLDQSVVAPEEADLLSRALGCRLMR 165
++F +W ++ V + NK DL D V +A + ++ +
Sbjct: 86 ITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVE 145
Query: 166 TSVKEDINVNSIFRYLTTK 184
TS K IN+N +F ++ +
Sbjct: 146 TSAKNAININELFIEISRR 164
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 53.0 bits (126), Expect = 1e-09
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 77 MLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV--ENECGEIPTVL 134
+ DTAGQE++ AI Y+R + + FS + +SF A ++ ++ E +P +L
Sbjct: 55 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 114
Query: 135 VQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
V NK DL D+ V+ EEA + + TS K NV+ +F L + +
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 52.7 bits (125), Expect = 2e-09
Identities = 43/142 (30%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
+ F + + V+ +WDTAGQE F ++ YYR AQA ++ +
Sbjct: 25 SNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYD 84
Query: 107 TIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDL---LDQSVVAPEEADLLSRALGCR 162
SF A H K E +I LV NKID+ + VA EE + L+ G
Sbjct: 85 VTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLL 144
Query: 163 LMRTSVKEDINVNSIFRYLTTK 184
TS K NVN +F + K
Sbjct: 145 FFETSAKTGENVNDVFLGIGEK 166
Score = 28.1 bits (61), Expect = 0.51
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 1 MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
V+ +WDTAGQE F ++ YYR AQA ++ + SF A W
Sbjct: 42 TQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVK 99
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 52.8 bits (125), Expect = 2e-09
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 5/152 (3%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
F + + + V + +WDTAGQE F ++ A+YRGA CV+ F
Sbjct: 24 NKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFD 83
Query: 107 TIDRDSFEAAHSWKMKVENECGE-----IPTVLVQNKIDLLDQSVVAPEEADLLSRALGC 161
++F+ SW+ + + P V++ NKIDL ++ V
Sbjct: 84 VTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNI 143
Query: 162 RLMRTSVKEDINVNSIFRYLTTKCLSELRQQE 193
TS KE INV F+ + L + + E
Sbjct: 144 PYFETSAKEAINVEQAFQTIARNALKQETEVE 175
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 52.7 bits (125), Expect = 2e-09
Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 15/155 (9%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
D+F + + ++ G++ L L+DTAGQE++D + Y +I FS
Sbjct: 31 NDAFPEEYVPTVFDHYAVSVTVG-GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 89
Query: 107 TIDRDSFEAAHSWKMK-VENECGEIPTVLVQNKIDLLDQSV------------VAPEEAD 153
++ SF+ + ++ +P +L+ +IDL D + E+
Sbjct: 90 VVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 149
Query: 154 LLSRALG-CRLMRTSVKEDINVNSIFRYLTTKCLS 187
L++ +G C + S + ++F L+
Sbjct: 150 KLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 184
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 50.8 bits (120), Expect = 8e-09
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--N 125
+GE L + DTAGQEE+ A+ Y R + + F+ + SFE H ++ +++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK 104
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
+ ++P VLV NK DL V +A L+R+ G + TS K V F L +
Sbjct: 105 DSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 50.4 bits (119), Expect = 1e-08
Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 15/155 (9%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
++F + + +G+ V L LWDTAGQE++D + Y +I FS
Sbjct: 27 TNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFS 85
Query: 107 TIDRDSFEAAHSWKMK-VENECGEIPTVLVQNKIDLLDQSVVAPE------------EAD 153
+ SFE + V + C P +LV K+DL D + +
Sbjct: 86 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 145
Query: 154 LLSRALG-CRLMRTSVKEDINVNSIFRYLTTKCLS 187
+++ +G + + S + ++F L
Sbjct: 146 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 50.0 bits (118), Expect = 1e-08
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-TKAYYRGAQACVITF 105
F + V + + +GE +++ LWDTAGQE F + YYR A V +
Sbjct: 24 AGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVY 83
Query: 106 STIDRDSFEAAHSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRL 163
+ SF + +W + K +IP +LV NK DL V + A + L
Sbjct: 84 DMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPL 143
Query: 164 MRTSVK---EDINVNSIFRYL 181
TS K ++ +V +IF L
Sbjct: 144 FETSAKNPNDNDHVEAIFMTL 164
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 50.0 bits (118), Expect = 2e-08
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
FE + + V + + ++ +WDTAGQE+F + YY AQ +I F
Sbjct: 25 TGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFD 84
Query: 107 TIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
R +++ +W + C IP VL NK+D+ D+ V A R +
Sbjct: 85 VTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVF--HRKKNLQYYDI 142
Query: 167 SVKEDINVNSIFRYLTTKCLSE 188
S K + N F +L K + +
Sbjct: 143 SAKSNYNFEKPFLWLARKLIGD 164
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 49.6 bits (117), Expect = 3e-08
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 14/140 (10%)
Query: 69 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK-VENEC 127
GE L L+DTAGQE++D + Y ++ FS + SFE + + + C
Sbjct: 46 IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Query: 128 GEIPTVLVQNKIDLLDQSVVA------------PEEADLLSRALGCRL-MRTSVKEDINV 174
+ P +LV +IDL D PE A+ L+R L + S +
Sbjct: 106 PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGL 165
Query: 175 NSIFRYLTTKCLSELRQQEE 194
++F L ++
Sbjct: 166 KNVFDEAILAALEPPEPKKS 185
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 48.1 bits (113), Expect = 7e-08
Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 5/130 (3%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
+I ++ E + + +WD GQ++ + + Y++ Q + + DR+ A
Sbjct: 30 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREE 89
Query: 120 KMKVENECGEIPTVLV-----QNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINV 174
M++ E VL+ Q+ + ++ + + + R + T +
Sbjct: 90 LMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGL 149
Query: 175 NSIFRYLTTK 184
+L+ +
Sbjct: 150 YEGLDWLSNQ 159
Score = 31.2 bits (69), Expect = 0.044
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 1 MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
E + + +WD GQ++ + + Y++ Q + + DR+ A M+
Sbjct: 34 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR- 92
Query: 61 SIKRTIKECEGEEVRLMLW 79
+ E E + L+++
Sbjct: 93 ----MLAEDELRDAVLLVF 107
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 47.3 bits (111), Expect = 1e-07
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
+ F + ++ S ++ + E + ++ L + DTAG E+F A+ Y + Q + +S
Sbjct: 25 QGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS 83
Query: 107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRL 163
+ +F + ++ ++P +LV NK DL D+ VV E+ L+R C
Sbjct: 84 ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAF 143
Query: 164 MRTSVKEDINVNSIFRYLTTK 184
+ +S K INVN IF L +
Sbjct: 144 LESSAKSKINVNEIFYDLVRQ 164
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 45.7 bits (107), Expect = 5e-07
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---E 124
C+ L + DT G +F A+ + A ++ +S R S E ++ +
Sbjct: 44 SCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK 103
Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
+ IP +LV NK D V EA+ L+R C M TS K + NV +F+ L
Sbjct: 104 GDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 160
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 45.7 bits (107), Expect = 5e-07
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 5/133 (3%)
Query: 54 HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF 113
+ + IK + + +L +WD GQ + ++Y+ + + DR F
Sbjct: 40 DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 99
Query: 114 EAAHSWKMKV--ENECGEIPTVLVQNKIDLLDQ---SVVAPEEADLLSRALGCRLMRTSV 168
E ++ E + +P ++ NK DLL S +A R ++ S
Sbjct: 100 EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 159
Query: 169 KEDINVNSIFRYL 181
V ++
Sbjct: 160 LTGEGVQDGMNWV 172
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 45.4 bits (106), Expect = 6e-07
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK-VENE 126
E +G++V L LWDTAG E++D + Y ++ FS DS E V++
Sbjct: 44 EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 103
Query: 127 CGEIPTVLVQNKIDLLDQSVV------------APEEADLLSRALGC-RLMRTSVKEDIN 173
C +P +LV NK DL + PEE ++ +G M S K
Sbjct: 104 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 163
Query: 174 VNSIFRYLTTKCL 186
V +F T L
Sbjct: 164 VREVFEMATRAAL 176
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 45.4 bits (106), Expect = 7e-07
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 8/148 (5%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLM-LWDTAGQEEFDAITKAYYRGAQACVITF 105
D + + + +G++V M +WDTAGQE F ++ A+YRGA CV+ +
Sbjct: 24 NDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVY 83
Query: 106 STIDRDSFEAAHSWKMK-----VENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL- 159
+ SFE SW+ + N P V++ NKID + + E++
Sbjct: 84 DVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL 143
Query: 160 -GCRLMRTSVKEDINVNSIFRYLTTKCL 186
L TS K INV++ F + L
Sbjct: 144 GDIPLFLTSAKNAINVDTAFEEIARSAL 171
Score = 30.4 bits (67), Expect = 0.11
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 15 LWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEG 71
+WDTAGQE F ++ A+YRGA CV+ + + SFE SW+ + + + E
Sbjct: 56 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 112
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 45.4 bits (106), Expect = 7e-07
Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 9/134 (6%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV- 123
++ + ++L +WD GQ + YY A + + D+D A +
Sbjct: 52 NVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLML 111
Query: 124 -ENECGEIPTVLVQNKIDLLDQ---SVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
E E + ++ NK D S V+ E + + ++ +S + +
Sbjct: 112 QEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLD 171
Query: 180 YLTTKCLSELRQQE 193
+L + +++++
Sbjct: 172 WL----IDVIKEEQ 181
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 45.0 bits (105), Expect = 8e-07
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
+ RL + DTAGQEEF A+ + Y R + ++ FS DR SFE + ++ ++
Sbjct: 47 VIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK 106
Query: 128 GE--IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
P +L+ NK DL Q V EE L+R L M S K +NV+ F L
Sbjct: 107 DRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL---- 162
Query: 186 LSELRQQEE 194
+ +R+ +E
Sbjct: 163 VRVIRKFQE 171
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 45.3 bits (106), Expect = 8e-07
Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)
Query: 50 FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
+ S ++ ++ + V+ +WD GQ++ + + YY G Q + D
Sbjct: 32 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 91
Query: 110 RDSFEAAHSWKMKVENECG--EIPTVLVQNKIDL---LDQSVVAPEEADLLSRALGCRLM 164
RD + A ++ N+ + ++ NK DL + + + R +
Sbjct: 92 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 151
Query: 165 RTSVKEDINVNSIFRYLTTK 184
+ + +LT+
Sbjct: 152 PSCATSGDGLYEGLTWLTSN 171
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 43.5 bits (101), Expect = 3e-06
Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 15/135 (11%)
Query: 69 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG 128
+ + + L LWDT+G +D + Y + A +I F ++ ++ E
Sbjct: 45 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 104
Query: 129 EIPTV-LVQNKIDLLD------------QSVVAPEEADLLSRALG-CRLMRTSVKEDIN- 173
+ LV K DL Q+ V+ ++ +++ +G + S + N
Sbjct: 105 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 164
Query: 174 VNSIFRYLTTKCLSE 188
V IF T C+++
Sbjct: 165 VRDIFHVATLACVNK 179
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 43.5 bits (101), Expect = 3e-06
Identities = 15/126 (11%), Positives = 41/126 (32%), Gaps = 5/126 (3%)
Query: 64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
++E R ++WD GQE + YY + ++ + DR+ K+
Sbjct: 49 SNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM 108
Query: 124 ENECG--EIPTVLVQNKIDLLDQ---SVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
+ ++ NK D+ + + ++ + + +
Sbjct: 109 LAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 168
Query: 179 RYLTTK 184
++ ++
Sbjct: 169 EWMMSR 174
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 42.4 bits (98), Expect = 8e-06
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 3/140 (2%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
F ++ ++ + + I G+E L L DTAGQ+E+ + Y ++ +S
Sbjct: 26 EGQFVDSYDPTIENTFTKLIT-VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYS 84
Query: 107 TIDRDSFE--AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM 164
SFE K+ +IP +LV NK DL + V++ EE L+ + +
Sbjct: 85 VTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFL 144
Query: 165 RTSVKEDINVNSIFRYLTTK 184
+S KE+ +FR + +
Sbjct: 145 ESSAKENQTAVDVFRRIILE 164
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 37.3 bits (85), Expect = 4e-04
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 93 AYYRGAQACVITFSTIDRDSFEAAHSWK--MKVENECGEIPTVLVQNKIDLLDQSVVAPE 150
+ R + V+ + DR SFE K + + + +LV NK DL V+ E
Sbjct: 68 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTE 127
Query: 151 EADLLSRALGCRLMRTSVKE-DINVNSIFRYLTTK 184
E + L+ L C S + N+ IF L +
Sbjct: 128 EGEKLATELACAFYECSACTGEGNITEIFYELCRE 162
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 37.0 bits (84), Expect = 5e-04
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153
A V + + + +++ + +IP +LV NK DL+ V+ E
Sbjct: 76 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR 135
Query: 154 LLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEE 194
+ C+ + TS NV +F + + ++R + +
Sbjct: 136 ACAVVFDCKFIETSAAVQHNVKELFEGI----VRQVRLRRD 172
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 36.9 bits (84), Expect = 6e-04
Identities = 27/154 (17%), Positives = 59/154 (38%), Gaps = 14/154 (9%)
Query: 47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
S++ + + K +G+ +++ + AG + + A A + FS
Sbjct: 27 TGSYQVLEKTESEQYKK--EMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFS 79
Query: 107 TIDRDSFEAAHSWKMKVENECG----EIPTVLVQNKIDLLDQSVVAPEEA---DLLSRAL 159
D +SF+A ++ + G + LV + + S +A L +
Sbjct: 80 LEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMK 139
Query: 160 GCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQE 193
C T +NV+ +F+ + K ++ +QQ+
Sbjct: 140 RCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 173
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 36.6 bits (83), Expect = 7e-04
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 12/135 (8%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
+ T +E ++ +D G + + K Y+ V D + F+ A
Sbjct: 30 PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVE 89
Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAP----------EEADLLSRALGCRLMRTS 167
+ N E ++P V++ NKID + A + + + S
Sbjct: 90 LDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 149
Query: 168 VKEDINVNSIFRYLT 182
V F++L+
Sbjct: 150 VVMRNGYLEAFQWLS 164
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 35.9 bits (81), Expect = 0.001
Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 101 CVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG 160
V + + + +++ + ++P +LV NK DL+ V+ +E +
Sbjct: 77 IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD 136
Query: 161 CRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEE 194
C+ + TS NV ++F + + ++R + +
Sbjct: 137 CKFIETSAALHHNVQALFEGV----VRQIRLRRD 166
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 33.5 bits (75), Expect = 0.009
Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV- 123
++ + ++ +WD G + YY A + + DRD + S + +
Sbjct: 40 NVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAML 99
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVA---PEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
E E + V+ NK D+ + + ++ +TS + ++
Sbjct: 100 EEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAME 159
Query: 180 YLTTK 184
+L
Sbjct: 160 WLVET 164
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 31.8 bits (71), Expect = 0.040
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 12/120 (10%)
Query: 65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE 124
+ E + V + D GQ + + + S+ + D ++
Sbjct: 35 HEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLT 94
Query: 125 NECGE------------IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
+ +L NK DLL++ V D G V++ +
Sbjct: 95 ESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL 154
Score = 26.0 bits (56), Expect = 3.0
Identities = 7/52 (13%), Positives = 14/52 (26%)
Query: 7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
E + V + D GQ + + + S+ + D
Sbjct: 40 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTN 91
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 30.8 bits (68), Expect = 0.074
Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 17/143 (11%)
Query: 56 WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 115
+ ++ T +E + +D G + + K Y V D +
Sbjct: 39 GQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLE 98
Query: 116 AHSWKMKVENECG--EIPTVLVQNKIDL------------LDQSVVAPEEADLLSRALGC 161
+ + + +P +++ NKID + + + L
Sbjct: 99 SKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNA 158
Query: 162 RLMR---TSVKEDINVNSIFRYL 181
R + SV + FR++
Sbjct: 159 RPLEVFMCSVLKRQGYGEGFRWM 181
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 30.0 bits (66), Expect = 0.11
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIP 131
V + LWD GQ F ++ + Y RG A V D++ EA+ + + ++ IP
Sbjct: 47 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 106
Query: 132 TVLVQNKIDLLD---QSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
+++ NK DL + + + + S KE N++ ++L
Sbjct: 107 VLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 159
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 29.3 bits (65), Expect = 0.27
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
E E+ TV+V NK+DL D+ + + +++TS K + + + YL K
Sbjct: 38 EKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKI 97
>d2ot9a1 c.52.1.33 (A:2-180) Hypothetical protein PSPTO1487
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 179
Score = 27.8 bits (62), Expect = 0.61
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVL 134
R++ W GQ + D +T R + ++ + + W+ KV + V
Sbjct: 76 RVLHWIEVGQPDADRLTWCSRRTERTSLLAYG--------SLRVWEGKVIPAIKNLKNVN 127
Query: 135 VQNKIDLLDQSVVAPEEADLLSRAL 159
+ + Q V+ A + R +
Sbjct: 128 IAA----VPQDVLE-VLAKDMPRVI 147
Score = 24.3 bits (53), Expect = 8.8
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 12 RLMLWDTAGQEEFDAITKAYYRGAQACVITFST 44
R++ W GQ + D +T R + ++ + +
Sbjct: 76 RVLHWIEVGQPDADRLTWCSRRTERTSLLAYGS 108
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 28.2 bits (62), Expect = 0.84
Identities = 10/92 (10%), Positives = 21/92 (22%)
Query: 63 KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
++ WD G + Y + F I + + +
Sbjct: 96 MERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIA 155
Query: 123 VENECGEIPTVLVQNKIDLLDQSVVAPEEADL 154
+ V+ K+D + E
Sbjct: 156 KAISMMKKEFYFVRTKVDSDITNEADGEPQTF 187
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 27.0 bits (58), Expect = 1.5
Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 5/149 (3%)
Query: 25 DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ 84
D I A + + + L DT G
Sbjct: 23 DHIR--GSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH 80
Query: 85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ 144
E A T RG + +D + + + P V+ NKID +
Sbjct: 81 E---AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHG 137
Query: 145 SVVAPEEADLLSRALGCRLMRTSVKEDIN 173
V + + + ++ + +
Sbjct: 138 WRVHEGRPFMETFSKQDIQVQQKLDTKVY 166
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.9 bits (58), Expect = 1.7
Identities = 7/89 (7%), Positives = 19/89 (21%), Gaps = 5/89 (5%)
Query: 60 VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA--- 116
S ++ + + + A+A V +
Sbjct: 34 DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAE 93
Query: 117 --HSWKMKVENECGEIPTVLVQNKIDLLD 143
+ + ++ NK D+
Sbjct: 94 FLYQVLIDSMALKNSPSLLIACNKQDIAM 122
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.393
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 789,671
Number of extensions: 35152
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 83
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)