BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2519
(622 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 21/137 (15%)
Query: 101 RSACGFMYQHDLFSPSLTVYEHL-------YFMALLKLDRRVKAYQRIALINSLLIELGL 153
R GF++Q P LT E++ Y A+ +RR +A +E
Sbjct: 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA-----------LECLK 130
Query: 154 MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM 213
M R + Q LSGG+++R++ A L +P ++L D+PT LDS + K++++
Sbjct: 131 MAELEERFANHKPNQ---LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 214 MRELTSQRKKTVLCTIH 230
+++L + KTV+ H
Sbjct: 188 LKKLNEEDGKTVVVVTH 204
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 87 GDIRVNGKPVE--GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI 144
G I ++GK V + F+YQ+ P + V ++L F +K ++K +R+
Sbjct: 55 GRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK---KIKDPKRV--- 108
Query: 145 NSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204
L ++ +I + LSGGE++R++ A L+T+P +LL DEP + LD
Sbjct: 109 --------LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160
Query: 205 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ M+ L + K TVL H + I M D+I ++ D + +G +
Sbjct: 161 RTQENAREMLSVLHKKNKLTVLHITHDQTEARI-MADRIAVVMDGKLIQVGKPE 213
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 21/137 (15%)
Query: 101 RSACGFMYQHDLFSPSLTVYEHL-------YFMALLKLDRRVKAYQRIALINSLLIELGL 153
R GF++Q P LT E++ Y A+ +RR +A +E
Sbjct: 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA-----------LECLK 130
Query: 154 MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM 213
M R + Q LSGG+++R++ A L +P ++L D+PT LDS + K++++
Sbjct: 131 MAELEERFANHKPNQ---LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187
Query: 214 MRELTSQRKKTVLCTIH 230
+++L + KTV+ H
Sbjct: 188 LKKLNEEDGKTVVVVTH 204
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 75/140 (53%), Gaps = 20/140 (14%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE++R++ A+ ++ +P +L+ DEP GLD + L+R++ + + KTV+ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHD 199
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADF-----LIKSLA 286
+ +I+ D++++L + F G++ + FLE Y+P F +++ L
Sbjct: 200 IET-VINHVDRVVVLEKGKKVFDGTR---MEFLEK--------YDPRFFTSKMLVMRRLV 247
Query: 287 VTTND--ELSSRRRLKRICD 304
+ D +S L+R+C+
Sbjct: 248 LKGEDPFSMSDDELLERVCN 267
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 73/135 (54%), Gaps = 10/135 (7%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE++R++ A+ ++ +P +L+ DEP GLD + L+R++ + + KTV+ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHD 197
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTND 291
+ +I+ D++++L + F G++ + FLE P + +++ L + D
Sbjct: 198 IET-VINHVDRVVVLEKGKKVFDGTR---MEFLEKYD---PRFFTSKMLVMRRLVLKGED 250
Query: 292 --ELSSRRRLKRICD 304
+S L+R+C+
Sbjct: 251 PFSMSDDELLERVCN 265
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 23/156 (14%)
Query: 101 RSACGFMYQHDLFSPSLTVYEHL-------YFMALLKLDRRVKAYQRIALINSLLIELGL 153
R GF++Q P LT E++ Y A +RR +A + L + L E
Sbjct: 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALE--CLKXAELEE--- 136
Query: 154 MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM 213
R + Q LSGG+++R++ A L +P ++L DEPT LDS + K+ ++
Sbjct: 137 ------RFANHKPNQ---LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQL 187
Query: 214 MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249
+++L + KTV+ H + + ++II L D
Sbjct: 188 LKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDG 221
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 24/173 (13%)
Query: 92 NGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF------MALLKLDRRVKAYQRIALIN 145
NGK + G ++Q P+LT +E++ F M+ ++ +RV+ +I I+
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH 131
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
+L + R LSGG+++R++ A L+ DP+LLL DEP + LD+
Sbjct: 132 HVL-------NHFPR----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+++E+ S+ T+L H P +++ + D++ +L + +G +
Sbjct: 175 MRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
G+ R+N P G ++Q P L+V E++ F L ++ QR+ +
Sbjct: 63 GEKRMNDTP---PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 119
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
+L L++ + LSGG+R+R++ L+ +P++ L DEP + LD+
Sbjct: 120 VLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 207 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
++ + L + +T++ H E + + DKI++L R A +G
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGK 217
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
G+ R+N P G ++Q P L+V E++ F L ++ QR+ +
Sbjct: 63 GEKRMNDTP---PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 119
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
+L L++ + LSGG+R+R++ L+ +P++ L DEP + LD+
Sbjct: 120 VLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 207 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
++ + L + +T++ H E + + DKI++L R A +G
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGK 217
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 107 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166
++Q P +TVY+++ F L+ R + QR+ + LL L+N +
Sbjct: 86 VFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE------ 139
Query: 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
LSGG+R+R++ ++ P + L DEP + LD A +RM EL +++ +
Sbjct: 140 -----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD---AKLRVRMRAELKKLQRQLGV 191
Query: 227 CTIH--QPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKS 284
TI+ E + M D+I ++ +GS D + G P +FL
Sbjct: 192 TTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPPMNFLD-- 249
Query: 285 LAVTTNDELS--SRRRLKRICDEFSV 308
A+ T D RLK + D+F V
Sbjct: 250 -AIVTEDGFVDFGEFRLKLLPDQFEV 274
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 171 VLSGGERKRLSFATELLT------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224
VLSGGE++R+ A L P L DEPT+ LD + +R++R+LT Q
Sbjct: 141 VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLA 200
Query: 225 VLCTIHQPSSELIDMF-DKIILLADSRTAFIGSKDAAL 261
V C +H L ++ D+I+LLA + G+ + L
Sbjct: 201 VCCVLH--DLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
G+ R+N P G ++Q P L+V E++ F L ++ QR+ +
Sbjct: 63 GEKRMNDTP---PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 119
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
+L L++ + LSGG+R+R++ L+ +P++ L D+P + LD+
Sbjct: 120 VLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAAL 168
Query: 207 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
++ + L + +T++ H E + + DKI++L R A +G
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGK 217
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 83/173 (47%), Gaps = 24/173 (13%)
Query: 92 NGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF------MALLKLDRRVKAYQRIALIN 145
NGK + G ++Q P+LT +E++ F M+ ++ +RV+ +I I+
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH 131
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
+L + R LSG +++R++ A L+ DP+LLL DEP + LD+
Sbjct: 132 HVL-------NHFPR----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+++E+ S+ T+L H P +++ + D++ +L + +G +
Sbjct: 175 MRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 17/184 (9%)
Query: 84 IIDGDIRVNGKPVE----GKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAY 138
+ G I ++G ++ G R+ G + Q + LFS TV E++ D V
Sbjct: 393 VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD--TVKENILLGRPTATDEEVVEA 450
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
++A + + + L T +G + LSGG+++RLS A L +P +L+ DE
Sbjct: 451 AKMANAHDFI--MNLPQGYDTEVGERGVK----LSGGQKQRLSIARIFLNNPPILILDEA 504
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
T+ LD S S + + L+ R T L H+ S+ I DKI+++ + G+
Sbjct: 505 TSALDLESESIIQEALDVLSKDR--TTLIVAHRLST--ITHADKIVVIENGHIVETGTHR 560
Query: 259 AALA 262
+A
Sbjct: 561 ELIA 564
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 104 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 163
G ++Q+ P +TVY+++ F L+ R + +++ + +L L+N +
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ--- 133
Query: 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 223
LSGG+++R++ A L+ +P +LL DEP + LD+ ++ ++ L +
Sbjct: 134 --------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185
Query: 224 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
T + H +E + M D+I ++ + +G+ D
Sbjct: 186 TTVYVTHD-QAEALAMADRIAVIREGEILQVGTPD 219
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 25/151 (16%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEH-----LYFMALLKLDRRVKAYQR 140
DG ++V K R+ ++QH +TV E+ + + L K D R +A +
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKY 136
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQK---VVLSGGERKRLSFATELLTDPALLLCDE 197
+A ++G Q V LSGG+++R+S A L +P +LL DE
Sbjct: 137 LA-----------------KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 179
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
PT+ LD +++R+M++L + K V+ T
Sbjct: 180 PTSALDPELVGEVLRIMQQLAEEGKTMVVVT 210
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V+LSGG+R+R++ A LL D +L+ DE T+ LD+ S + + EL Q+ +T L
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVIA 536
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
H+ S+ I+ D+I+++ D G+ LA
Sbjct: 537 HRLST--IEQADEIVVVEDGIIVERGTHSELLA 567
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 104 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 163
GF++Q P LT E++ + +LK+ + K + LL ELGL G
Sbjct: 84 LGFVFQFHYLIPELTALENV-IVPMLKMGKPKKEAKERG--EYLLSELGL--------GD 132
Query: 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 223
+ LSGGE++R++ A L +P LL DEPT LDS + +++ + ++
Sbjct: 133 KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTS 192
Query: 224 TVLCTIHQPSSELIDMFDKIILLADSR 250
V+ T H+ EL ++ + + + D +
Sbjct: 193 IVMVT-HE--RELAELTHRTLEMKDGK 216
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 25/174 (14%)
Query: 99 KFRSACGFMYQ---HDLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLM 154
K R + G ++Q + LFS S VY+ + F A+ +KL + R + N+L
Sbjct: 81 KLRESIGIVFQDPDNQLFSAS--VYQDVSFGAVNMKLP---EDEIRKRVDNAL------- 128
Query: 155 NSQHTRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 212
R G + K LS G++KR++ A L+ +P +L+ DEPT GLD S++++
Sbjct: 129 ----KRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184
Query: 213 MMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGSKDAALAFLE 265
++ E+ + T++ H +++ ++ D + ++ + R G+ A E
Sbjct: 185 LLVEMQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 155 NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 214
N T IG + V+LSGG+R+R++ A LL D +L+ DE T+ LD+ S + +
Sbjct: 468 NGLDTVIGENG----VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523
Query: 215 RELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249
EL Q+ +T L H+ S+ I+ D+I+++ D
Sbjct: 524 DEL--QKNRTSLVIAHRLST--IEKADEIVVVEDG 554
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 10/100 (10%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+R++ A LL D +L+ DE T+ LD+ S + + EL Q+ KTVL H+
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL--QKNKTVLVIAHR 538
Query: 232 PSSELIDMFDKIILLAD------SRTAFIGSKDAALAFLE 265
S+ I+ D+I+++ + R A + ++D A A L
Sbjct: 539 LST--IEQADEILVVDEGEIIERGRHADLLAQDGAYAQLH 576
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 16/150 (10%)
Query: 82 DCIIDGDIRVNGKPVE-GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR--RVKAY 138
+ IIDG I + K K R G ++Q P +TV ++ +A +K+ + R KA
Sbjct: 59 EIIIDG-INLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNIT-LAPMKVRKWPREKAE 116
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ LL ++GL + H S LSGG+ +R++ A L +P ++L DEP
Sbjct: 117 AKAM---ELLDKVGLKDKAHAYPDS--------LSGGQAQRVAIARALAMEPKIMLFDEP 165
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
T+ LD +++ +M++L ++ V+ T
Sbjct: 166 TSALDPEMVGEVLSVMKQLANEGMTMVVVT 195
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ R TV+
Sbjct: 138 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR--TVII 195
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 266
H+ S+ + D+II++ + G L+ ES
Sbjct: 196 IAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 232
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ R TV+
Sbjct: 138 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR--TVII 195
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 266
H+ S+ + D+II++ + G L+ ES
Sbjct: 196 IAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 232
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ R TV+
Sbjct: 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR--TVII 193
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 266
H+ S+ + D+II++ + G L+ ES
Sbjct: 194 IAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 230
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ R TV+
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR--TVII 199
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 266
H+ S+ + D+II++ + G L+ ES
Sbjct: 200 IAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 16/181 (8%)
Query: 87 GDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRI 141
G+I ++G+P++ +RS GF+ Q T+ E+L Y + D + +
Sbjct: 57 GEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDL 115
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
A S + + + +T +G + V +SGG+R+RL+ A L +P +L+ DE T
Sbjct: 116 AFARSFV--ENMPDQLNTEVGE----RGVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261
LDS S S + + + L R T L H+ S+ ++D DKI + + G + +
Sbjct: 170 LDSESESMVQKALDSLMKGR--TTLVIAHRLST-IVDA-DKIYFIEKGQITGSGKHNELV 225
Query: 262 A 262
A
Sbjct: 226 A 226
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 11/133 (8%)
Query: 99 KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 158
K R G ++QH S TV+ ++ L+LD K + + LL +GL +H
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVALP--LELDNTPKDEVK-RRVTELLSLVGL-GDKH 134
Query: 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 218
S+ LSGG+++R++ A L ++P +LLCDE T+ LD + ++ +++++
Sbjct: 135 DSYPSN-------LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 219 SQRKKTVLCTIHQ 231
+ T+L H+
Sbjct: 188 RRLGLTILLITHE 200
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 16/150 (10%)
Query: 82 DCIIDGDIRVNGKPVE-GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR--RVKAY 138
+ IIDG I + K K R G ++Q P +TV ++ +A +K+ + R KA
Sbjct: 80 EIIIDG-INLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNIT-LAPMKVRKWPREKAE 137
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ LL ++GL + H S LSGG+ +R++ A L +P ++L DEP
Sbjct: 138 AKAM---ELLDKVGLKDKAHAYPDS--------LSGGQAQRVAIARALAMEPKIMLFDEP 186
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
T+ LD +++ +M++L ++ V+ T
Sbjct: 187 TSALDPEMVGEVLSVMKQLANEGMTMVVVT 216
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 15/175 (8%)
Query: 86 DGDIRVNGKPV----EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
+GDI++ GK V RS G + Q + Y LY + +KA +
Sbjct: 73 EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSA 132
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
L + IE L T +G+ + LSGGER+R++ A LL DP +++ DE T+
Sbjct: 133 QLYD--FIE-ALPKKWDTIVGNKGMK----LSGGERQRIAIARCLLKDPKIVIFDEATSS 185
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
LDS + + + +L R T++ H+ S+ I + IILL + G+
Sbjct: 186 LDSKTEYLFQKAVEDLRKNR--TLIIIAHRLST--ISSAESIILLNKGKIVEKGT 236
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
Q LSGG+R+R++ A L+ +P +L+ D+ T+ LD S ++R M ++ R TV+
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGR--TVII 199
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 266
H+ S+ + D+II++ + G L+ ES
Sbjct: 200 IAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 24/148 (16%)
Query: 115 PSLTVYEHLYFMALLK------LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168
P +TVYE++ F +K +D+RV+ + I LL R +
Sbjct: 96 PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL----------NRYPAQ---- 141
Query: 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
LSGG+R+R++ A ++ +P +LL DEP + LD+ + +++L + K T +
Sbjct: 142 ---LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV 198
Query: 229 IHQPSSELIDMFDKIILLADSRTAFIGS 256
H E + M D+I ++ + IGS
Sbjct: 199 THD-QVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 24/148 (16%)
Query: 115 PSLTVYEHLYFMALLK------LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168
P +TVYE++ F +K +D+RV+ + I LL R +
Sbjct: 97 PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL----------NRYPAQ---- 142
Query: 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
LSGG+R+R++ A ++ +P +LL DEP + LD+ + +++L + K T +
Sbjct: 143 ---LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV 199
Query: 229 IHQPSSELIDMFDKIILLADSRTAFIGS 256
H E + M D+I ++ + IGS
Sbjct: 200 THD-QVEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 11/133 (8%)
Query: 99 KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 158
K R G ++QH S TV+ ++ L + + +R+ + SL+ GL +H
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV---GL-GDKH 157
Query: 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 218
S+ LSGG+++R++ A L ++P +LLCD+ T+ LD + ++ +++++
Sbjct: 158 DSYPSN-------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 219 SQRKKTVLCTIHQ 231
+ T+L H+
Sbjct: 211 RRLGLTILLITHE 223
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 88 DIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL 147
D+ VN P K+R G ++Q+ P +TV+E++ F + + + +R+ I
Sbjct: 64 DVLVNDIP--PKYRE-VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARK 120
Query: 148 LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 207
L+ L++ + T+ LSGG+++R++ A L+ P +LL DEP + LD+
Sbjct: 121 LLIDNLLDRKPTQ-----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 208 SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ ++ L + T + H +E + M +I + + G+ D
Sbjct: 170 MIMRAEIKHLQQELGITSVYVTHD-QAEAMTMASRIAVFNQGKLVQYGTPD 219
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 11/133 (8%)
Query: 99 KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 158
K R G ++QH S TV+ ++ L + + +R+ + SL+ GL +H
Sbjct: 102 KARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV---GL-GDKH 157
Query: 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 218
S+ LSGG+++R++ A L ++P +LLCD+ T+ LD + ++ +++++
Sbjct: 158 DSYPSN-------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 219 SQRKKTVLCTIHQ 231
+ T+L H+
Sbjct: 211 RRLGLTILLITHE 223
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ R TV+
Sbjct: 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR--TVII 193
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 266
+ S+ + D+II++ + G L+ ES
Sbjct: 194 IAARLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 230
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ R TV+
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR--TVII 199
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 266
+ S+ + D+II++ + G L+ ES
Sbjct: 200 IAARLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+ + A + ++ L+L DEPT+ LD + ++ ++ +L + TV+ T HQ
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKD 258
P ++++ + +K +LL F +++
Sbjct: 189 P-NQVVAIANKTLLLNKQNFKFGETRN 214
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 87 GDIRVNGKPVEG-KFRSACGFMYQHDLFSPS-----LTVYEHLYF-MALLKLDRRVKAYQ 139
G+I ++G P + R G+++Q+ PS TV E + F + ++ LD + +
Sbjct: 65 GEIFLDGSPADPFLLRKNVGYVFQN----PSSQIIGATVEEDVAFSLEIMGLDES-EMRK 119
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
RI + L+ GL + + LSGG+++RL+ A+ L D L DEP
Sbjct: 120 RIKKVLELVGLSGL-----------AAADPLNLSGGQKQRLAIASMLARDTRFLALDEPV 168
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
+ LD S ++ +++ L ++ K +L T H+ E +D D I+ +++ F GS
Sbjct: 169 SMLDPPSQREIFQVLESLKNEGKGIILVT-HE--LEYLDDMDFILHISNGTIDFCGS 222
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 14/174 (8%)
Query: 87 GDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI 144
GD+ + GK V + G ++Q+ +TVY+++ F ++RV + A +
Sbjct: 70 GDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLR---EKRVPKDEMDARV 126
Query: 145 NSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204
LL + R+ S + LSGG+++R++ A L P +LL DEP +D+
Sbjct: 127 RELL--------RFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDT 178
Query: 205 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+L +R++ + T + H E +++ D++++L + G+ +
Sbjct: 179 QIRRELRTFVRQVHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNVEQFGTPE 231
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 90/184 (48%), Gaps = 17/184 (9%)
Query: 84 IIDGDIRVNGKPV----EGKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAY 138
I G IR++G+ + + RS G + Q LF+ T+ +++ + + + V+A
Sbjct: 106 ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND--TIADNIRYGRVTAGNDEVEAA 163
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ A I+ + + T++G + LSGGE++R++ A +L P ++L DE
Sbjct: 164 AQAAGIHDAI--MAFPEGYRTQVGERGLK----LSGGEKQRVAIARTILKAPGIILLDEA 217
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
T+ LD+ + + + ++ + R T + H+ S+ + D+I+++ D G +
Sbjct: 218 TSALDTSNERAIQASLAKVCANR--TTIVVAHRLST--VVNADQILVIKDGCIVERGRHE 273
Query: 259 AALA 262
A L+
Sbjct: 274 ALLS 277
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
+TR+G TQ LSGG+++R++ A L+ P +LL DE T+ LD+ S ++++E
Sbjct: 1162 NTRVGDKG-TQ---LSGGQKQRIAIARALVRQPHILLLDEATSALDTESE----KVVQEA 1213
Query: 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
+ ++ C + I D I+++ + + G+ LA
Sbjct: 1214 LDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L+ +P +LL DE T+ LD+ S + + + + ++ +T + H+
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK--AREGRTTIVIAHR 584
Query: 232 PS----SELIDMFDKIILL 246
S +++I FD +++
Sbjct: 585 LSTVRNADVIAGFDGGVIV 603
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
+TR+G TQ LSGG+++R++ A L+ P +LL DE T+ LD+ S ++++E
Sbjct: 1162 NTRVGDKG-TQ---LSGGQKQRIAIARALVRQPHILLLDEATSALDTESE----KVVQEA 1213
Query: 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
+ ++ C + I D I+++ + + G+ LA
Sbjct: 1214 LDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L+ +P +LL DE T+ LD+ S + + + + ++ +T + H+
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK--AREGRTTIVIAHR 584
Query: 232 PS----SELIDMFDKIILL 246
S +++I FD +++
Sbjct: 585 LSTVRNADVIAGFDGGVIV 603
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 27/152 (17%)
Query: 87 GDIRVNGK-----PVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
G++R+NG P E R GF+ Q P L+VY ++ + R V+ +R
Sbjct: 53 GEVRLNGADITPLPPE---RRGIGFVPQDYALFPHLSVYRNIAYGL-----RNVERVERD 104
Query: 142 ALINSLLIELG---LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ + +LG L++ + R LSGGER+R++ A L+ P LLL DEP
Sbjct: 105 RRVREMAEKLGIAHLLDRKPAR-----------LSGGERQRVALARALVIQPRLLLLDEP 153
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+ +D + L+ +R + + +L H
Sbjct: 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+ ++ A L+ P LL+ D+ T+ LD+ + ++ R++ E +TVL HQ
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ 216
Query: 232 PSSELIDMFDKIILLADS 249
S L + I+ L +
Sbjct: 217 LS--LAERAHHILFLKEG 232
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
+ V+LSGG+++R++ A LL +P +LL DE T+ LD+ + + + L R TVL
Sbjct: 480 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGR--TVLV 537
Query: 228 TIHQPSS 234
H+ S+
Sbjct: 538 IAHRLST 544
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGGE +R++ A LL D + L DEP+ LD + R +R L + +KT L H
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGGE +R++ A LL + DEP++ LD R +R L S+ K+VL H
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL-SEEGKSVLVVEH 216
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL- 187
+ +D ++ ++ I I L L + + ++G + T LSGGE +R+ A+EL
Sbjct: 767 MTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATT----LSGGEAQRIKLASELRK 822
Query: 188 --TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245
T L + DEPT GL KL+ ++ L R TV+ H + ++I D II
Sbjct: 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEH--NLDVIKNADHIID 879
Query: 246 LADSRTAFIGSKDAALAFLESQGYPCPYGYNPADF 280
L G K+ ++ + G P NP +
Sbjct: 880 LGPE-----GGKEG--GYIVATGTPEEIAKNPHSY 907
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 116 SLTVYEHLYFMALLKLDRRVKA-----YQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170
L++ E L F+ L L R + + I L+++GL ++ + S+ T
Sbjct: 411 ELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGL---EYLTLSRSATT--- 464
Query: 171 VLSGGERKRLSFATELLTD--PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
LSGGE +R+ AT++ + + + DEPT GL +LI+ +++L TV+
Sbjct: 465 -LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVV 522
Query: 229 IHQPSSELIDMFDKII 244
H E+I D II
Sbjct: 523 EH--DEEVIRNADHII 536
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGGE +R++ A LL D + L DEP+ LD + R +R L + +KT L H
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGGE +R++ A LL DEP++ LD K+ R++R L ++ K VL H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEH 286
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGGE +R++ A LL D + L DEP+ LD + R +R L + +KT L H
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGGE +R++ A LL DEP++ LD K+ R++R L ++ K VL H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEH 272
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 10/96 (10%)
Query: 134 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 193
+V+ R+A I++ + EL TR+G TQ LSGG+++R++ A L+ +P +L
Sbjct: 1186 QVEEAARLANIHNFIAEL--PEGFETRVGDRG-TQ---LSGGQKQRIAIARALVRNPKIL 1239
Query: 194 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
L DE T+ LD+ S ++++E + ++ C +
Sbjct: 1240 LLDEATSALDTESE----KVVQEALDRAREGRTCIV 1271
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 153 LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 212
L N +T +G TQ LSGG+++R++ A L+ +P +LL DE T+ LD+ S + +
Sbjct: 540 LPNGYNTLVGDRG-TQ---LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595
Query: 213 MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
+ + + + +T + H+ S+ I D II + + +G A +A
Sbjct: 596 ALDK--AAKGRTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRALMA 641
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
+ V+LSGG+++R++ A LL +P +LL DE T+ LD+ + + + L R TVL
Sbjct: 511 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGR--TVLV 568
Query: 228 TIHQPSS 234
H S+
Sbjct: 569 IAHHLST 575
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 116 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
S T+ E+L + D + +IA I+ +I L G + SGG
Sbjct: 430 SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN------FSGG 483
Query: 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 235
+++RLS A L+ P +L+ D+ T+ +D + +++ ++ T + T + T P++
Sbjct: 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTAL 542
Query: 236 LIDMFDKIILLADSRTAFIGSKDAAL 261
L DKI++L + + A G+ L
Sbjct: 543 LA---DKILVLHEGKVAGFGTHKELL 565
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 107 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166
++Q P TVY+++ F L+ + + +R+ + L L+N +
Sbjct: 89 VFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRE------ 142
Query: 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
LSGG+R+R++ ++ P + L DEP + LD+ K +++L Q T +
Sbjct: 143 -----LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTI 197
Query: 227 CTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
H E D+I + +G+ D
Sbjct: 198 YVTHD-QVEAXTXGDRIAVXNKGELQQVGTPD 228
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 212
LSGG ++R+ A LL DP +L+ DEPT+ LD + + +I+
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 20/206 (9%)
Query: 26 SEIVGSVQ----VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVID 81
S+IV VQ Y ++ + +D + V L N S + L +Q
Sbjct: 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK-G 61
Query: 82 DCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR- 140
I +G N KP R + + P LTVYE+L A + D+ + +R
Sbjct: 62 KIIFNGQDITN-KPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDK--EGIKRD 118
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ I SL L + ++G + LSGGE++ L+ L + P LL DEP+
Sbjct: 119 LEWIFSLFPRL---KERLKQLGGT-------LSGGEQQXLAIGRALXSRPKLLXXDEPSL 168
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVL 226
GL S++ +++++ +Q T+L
Sbjct: 169 GLAPILVSEVFEVIQKI-NQEGTTIL 193
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+ ++ A L+ P LL+ D T+ LD+ + ++ R++ E +TVL Q
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216
Query: 232 PSSELIDMFDKIILLADS 249
S L + I+ L +
Sbjct: 217 LS--LAERAHHILFLKEG 232
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
S G ++L A L+ +P L + DEPT+GLD +A ++ +++++ SQ T+L + H
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ-ASQEGLTILVSSH 204
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 161 IGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 218
+G S+ Q+ + LS GE++R+ A L P +L+ DEP GLD + L+ ++ L+
Sbjct: 149 VGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLS 208
Query: 219 SQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251
+ E+ F KI+LL D ++
Sbjct: 209 DSYPTLAXIYVTHFIEEITANFSKILLLKDGQS 241
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 9/188 (4%)
Query: 82 DCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
+ ++DG+ + P E + R +Q+ + P +T+ L KL R V +
Sbjct: 61 EILLDGENILELSPDE-RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW 119
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
+ L L S +R + SGGE+KR L+ +P + DE +G
Sbjct: 120 TKVKKALELLDWDESYLSRYLNEG------FSGGEKKRNEILQLLVLEPTYAVLDETDSG 173
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261
LD + + R + + ++ T +Q I DK+ ++ D R G + AL
Sbjct: 174 LDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQP-DKVHVMMDGRVVATGGPELAL 232
Query: 262 AFLESQGY 269
LE++GY
Sbjct: 233 E-LEAKGY 239
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V LSGG+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT- 217
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 289
E + DKI++L + F G+ F E Q DF K + T
Sbjct: 218 --SKMEHLRKADKILILHQGSSYFYGT------FSELQSL-------RPDFSSKLMGYDT 262
Query: 290 NDELSSRRR---LKRICDEFSVCD 310
D+ + RR L FSV D
Sbjct: 263 FDQFTEERRSSILTETLRRFSVDD 286
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+ ++ A L+ P +L+ D+ T+ LD+ S ++ +++ E + ++VL
Sbjct: 155 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH 214
Query: 232 PSSELIDMFDKIILL 246
S L++ D I+ L
Sbjct: 215 LS--LVEQADHILFL 227
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V LSGG+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 158 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT- 216
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 289
E + DKI++L + F G+ F E Q DF K + T
Sbjct: 217 --SKMEHLRKADKILILHQGSSYFYGT------FSELQSL-------RPDFSSKLMGYDT 261
Query: 290 NDELSSRRR---LKRICDEFSVCD 310
D+ + RR L FSV D
Sbjct: 262 FDQFTEERRSSILTETLRRFSVDD 285
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 16/129 (12%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V LSGG+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT- 217
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 289
E + DKI++L + F G+ F E Q DF K + T
Sbjct: 218 --SKMEHLRKADKILILHQGSSYFYGT------FSELQSL-------RPDFSSKLMGYDT 262
Query: 290 NDELSSRRR 298
D+ + RR
Sbjct: 263 FDQFTEERR 271
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 16/129 (12%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V LSGG+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT- 217
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 289
E + DKI++L + F G+ F E Q DF K + T
Sbjct: 218 --SKMEHLRKADKILILHQGSSYFYGT------FSELQSL-------RPDFSSKLMGYDT 262
Query: 290 NDELSSRRR 298
D+ + RR
Sbjct: 263 FDQFTEERR 271
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 16/129 (12%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V LSGG+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT- 217
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 289
E + DKI++L + F G+ F E Q DF K + T
Sbjct: 218 --SKMEHLRKADKILILHQGSSYFYGT------FSELQSL-------RPDFSSKLMGYDT 262
Query: 290 NDELSSRRR 298
D+ + RR
Sbjct: 263 FDQFTEERR 271
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 87 GDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G+I ++GK + K G++ Q + P LTVY ++ + R + QR
Sbjct: 59 GEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR 118
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
I ++EL T I + LSGG+++R + A L DP L+L DEP +
Sbjct: 119 I----EAMLEL-------TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFS 167
Query: 201 GLDSFSASKLIRMMRE-----LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
LD +L R +RE L + K V + E + D+I ++ R
Sbjct: 168 ALD----EQLRRQIREDMIAALRANGKSAVFVS--HDREEALQYADRIAVMKQGR 216
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 65/168 (38%), Gaps = 40/168 (23%)
Query: 74 LFLSQVIDDCIIDGDIRVNGKPVEGKFRS-------ACGFMYQHDLFSPSLTVYEHLYFM 126
LFL V C + R N + +E ++R A HD F+ E F
Sbjct: 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA-----DESAIFR 709
Query: 127 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186
AL L E+GL + R+G + LSGGE +R+ ATEL
Sbjct: 710 AL-----------------DTLREVGL---GYLRLGQPATE----LSGGEAQRIKLATEL 745
Query: 187 L---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
+ + DEPTTGL +L R + +L TV+ H+
Sbjct: 746 RRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAVEHK 792
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
LSGGER RL+ + L + +LL+ DEPT LD KLI +M + + +
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 143
Query: 226 LCTIHQPSSELIDMFDKIILLA 247
L + + EL D D +I ++
Sbjct: 144 LVSHDE---ELKDAADHVIRIS 162
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
LSGGER RL+ + L + +LL+ DEPT LD KLI +M + + +
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 148
Query: 226 LCTIHQPSSELIDMFDKIILLA 247
L + + EL D D +I ++
Sbjct: 149 LVSHDE---ELKDAADHVIRIS 167
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
LSGGER RL+ + L + +LL+ DEPT LD KLI +M + + +
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 226 LCTIHQPSSELIDMFDKIILLA 247
L + + EL D D +I ++
Sbjct: 118 LVSHDE---ELKDAADHVIRIS 136
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
+ LSGG+R R+S A + D L L D P LD + ++ K +L T
Sbjct: 159 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT- 217
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 289
E + DKI++L + + F G+ F E Q DF K + +
Sbjct: 218 --SKMEHLKKADKILILHEGSSYFYGT------FSELQNL-------QPDFSSKLMGCDS 262
Query: 290 NDELSSRRR 298
D+ S+ RR
Sbjct: 263 FDQFSAERR 271
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
Q AL+ L I L + T IG + LSGG+++R+S A + ++ + L D+P
Sbjct: 102 QACALLPDLEI---LPSGDRTEIGEKGVN----LSGGQKQRVSLARAVYSNADIYLFDDP 154
Query: 199 TTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257
+ +D+ + ++ + KT + H S + D II+++ + + +GS
Sbjct: 155 LSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH--SMSYLPQVDVIIVMSGGKISEMGSY 212
Query: 258 DAALA 262
LA
Sbjct: 213 QELLA 217
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
+ LSGG+R R+S A + D L L D P LD + ++ K +L T
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT- 216
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 289
E + DKI++L + + F G+ F E Q DF K + +
Sbjct: 217 --SKMEHLKKADKILILHEGSSYFYGT------FSELQNL-------RPDFSSKLMGCDS 261
Query: 290 NDELSSRRR 298
D+ S+ RR
Sbjct: 262 FDQFSAERR 270
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 148 LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL---TDPALLLCDEPTTGLDS 204
L+++GL + R+G + T LSGGE +R+ A+EL T + + DEPTTGL
Sbjct: 847 LVDVGL---GYVRLGQPAPT----LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHF 899
Query: 205 FSASKLIRMMRELTSQRKKTVLCTIH 230
KL+ ++ L + TV+ H
Sbjct: 900 DDIRKLLNVINGLVD-KGNTVIVIEH 924
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 170 VVLSGGERKRLSFATELLTD--PALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGGE +R+ AT++ + L + DEP+ GL +LI + L
Sbjct: 520 ATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRL 569
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
+ LSGG+R R+S A + D L L D P LD + ++ K +L T
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT- 216
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 289
E + DKI++L + + F G+ F E Q DF K + +
Sbjct: 217 --SKMEHLKKADKILILHEGSSYFYGT------FSELQNL-------RPDFSSKLMGCDS 261
Query: 290 NDELSSRRR 298
D+ S+ RR
Sbjct: 262 FDQFSAERR 270
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
+ LSGG+R R+S A + D L L D P LD + ++ K +L T
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT- 199
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGS 256
E + DKI++L + + F G+
Sbjct: 200 --SKMEHLKKADKILILHEGSSYFYGT 224
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
+ LSGG+R R+S A + D L L D P LD + ++ K +L T
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT- 187
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGS 256
E + DKI++L + + F G+
Sbjct: 188 --SKMEHLKKADKILILHEGSSYFYGT 212
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
+ LSGG+R R+S A + D L L D P LD + ++ K +L T
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT- 186
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGS 256
E + DKI++L + + F G+
Sbjct: 187 --SKMEHLKKADKILILHEGSSYFYGT 211
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
LSGGER RL+ + L + +LL+ DEPT LD KLI +M + + +
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 226 LCTIHQPSSELIDMFDKIILLA 247
L + EL D D +I ++
Sbjct: 309 LVS---HDEELKDAADHVIRIS 327
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
LSGGER RL+ + L + +LL+ DEPT LD KLI +M + + +
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 328
Query: 226 LCTIHQPSSELIDMFDKIILLA 247
L + EL D D +I ++
Sbjct: 329 LVS---HDEELKDAADHVIRIS 347
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA 183
+F ++ K+ R+++ L ++GL + ++G + T LSGGE +R+ A
Sbjct: 815 FFASIPKIKRKLET----------LYDVGLG---YXKLGQPATT----LSGGEAQRVKLA 857
Query: 184 TELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240
EL L + DEPTTGL ++L+ ++ L TVL H + ++I
Sbjct: 858 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEH--NLDVIKTA 914
Query: 241 DKIILLA 247
D II L
Sbjct: 915 DYIIDLG 921
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 172 LSGGERKRLSFATELLTD--PALLLCDEPTTGLDSFSASKLIRMMR 215
LSGGE +R+ AT++ + L + DEP+ GL +LI ++
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLK 550
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 214
LSGG + +L+ A +L + +LL DEPT LD+ + + L+ +
Sbjct: 548 ALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
LSGG++ +L A P L++ DEPT LD S L + ++E
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 214
LSGG + +L+ A +L + +LL DEPT LD+ + + L+ +
Sbjct: 542 ALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 585
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
LSGG++ +L A P L++ DEPT LD S L + ++E
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 940
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 24/135 (17%)
Query: 117 LTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
+TV + L +F ++ K+ R+++ L ++GL + ++G + T LSGG
Sbjct: 807 MTVEDALDFFASIPKIKRKLET----------LYDVGL---GYMKLGQPATT----LSGG 849
Query: 176 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
E +R+ A EL L + DEPTTGL ++L+ ++ L TVL H
Sbjct: 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEH-- 906
Query: 233 SSELIDMFDKIILLA 247
+ ++I D II L
Sbjct: 907 NLDVIKTADYIIDLG 921
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 116 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT---QKVVL 172
+++V E L F L+L + R+ ++ + LG + + +G +T L
Sbjct: 451 AMSVTEALAFFDGLELTEKEAQIARL-ILREIRDRLGFLQN----VGLDYLTLSRSAGTL 505
Query: 173 SGGERKRLSFATELLTD--PALLLCDEPTTGLDSFSASKLI---RMMRELTS 219
SGGE +R+ AT++ + L + DEP+ GL +LI + MR+L +
Sbjct: 506 SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGN 557
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 172 LSGGERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
LSGGE +R+ A EL L + DEPTTGL ++L+ ++ L TVL
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVI 602
Query: 229 IHQPSSELIDMFDKIILLA 247
H + ++I D II L
Sbjct: 603 EH--NLDVIKTADYIIDLG 619
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 172 LSGGERKRLSFATELLTD--PALLLCDEPTTGLDSFSASKLI---RMMREL 217
LSGGE +R+ AT++ + L + DEP+ GL +LI + MR+L
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL 253
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
L+ G+R+ ++ A L+ P LL+ D T+ LD+ + ++ R++ E +TVL Q
Sbjct: 157 LAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216
Query: 232 PSSELIDMFDKIILLADS 249
S L + I+ L +
Sbjct: 217 LS--LAERAHHILFLKEG 232
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
L GGER RL+ + L + +LL+ DEPT LD KLI +M + + +
Sbjct: 54 LRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 113
Query: 226 LCTIHQPSSELIDMFDKIILLA 247
L + + EL D D +I ++
Sbjct: 114 LVSHDE---ELKDAADHVIRIS 132
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
LSGG++ +L A P L++ DEPT LD S L + ++E
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI 211
LSGG + +L+ A +L + +LL DEPT LD+ + + L+
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLV 588
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGG+ K + L+T+P +++ DEP G+ A + + EL ++
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGG+ K + L+T+P +++ DEP G+ A + + EL ++
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 30/158 (18%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA-------------LLKLD 132
D + +V V +FR + Y +L+S L + + ++ L K+D
Sbjct: 55 DPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID 114
Query: 133 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192
R K + + LL L N +LSGG +RL A LL + +
Sbjct: 115 ERGKKDE----VKELLNMTNLWNKDAN-----------ILSGGGLQRLLVAASLLREADV 159
Query: 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+ D+P++ LD + + +REL + K V+ H
Sbjct: 160 YIFDQPSSYLDVRERMNMAKAIRELL--KNKYVIVVDH 195
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE ++L A L + L + D+P++ LD + + ++ +T +RK H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 232 PS 233
S
Sbjct: 446 LS 447
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGG+ K + L+T+P +++ D+P G+ A + + EL ++
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 172 LSGGERKRLSFATELL-----TDPA--LLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGGE +R+ A +L +PA LLL DEP LD S L +++ L+ Q
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQ 182
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE +R++ L + L DEP+ LDS +++R KKT H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD 527
Query: 232 PSSELIDMFDKIILLADSRTAFIG--SKDAALAFLESQGYPCPYGYNPADFLIKSLAVT- 288
F LAD F G SK+A ES C + +K+L VT
Sbjct: 528 --------FIMATYLADKVIVFEGIPSKNAHARAPESLLTGC-------NRFLKNLNVTF 572
Query: 289 TNDELSSRRRLKRI 302
D S R R+ ++
Sbjct: 573 RRDPNSFRPRINKL 586
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCT 228
LSGGE +R + + + + + DEP++ LD +A+++IR + T K V+C
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT----KYVICV 277
Query: 229 IH 230
H
Sbjct: 278 EH 279
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 172 LSGGERKRLSFATELL-----TDPA--LLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGGE +R+ A +L +PA LLL DEP LD S L +++ L Q
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQ 182
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 172 LSGGERKRLSFATELL-----TDPA--LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224
LSGGE +R+ A +L +PA LLL D+P LD S L +++ L+ Q
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAI 186
Query: 225 VLCT 228
V+ +
Sbjct: 187 VMSS 190
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V SGGE+KR + +P L + DE +GLD + + + L ++ ++ T
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
Query: 230 HQPSSELIDMF--DKIILLADSRTAFIGSKDAALAF-LESQGY 269
+Q ++D D + +L R + S D L LE QGY
Sbjct: 204 YQ---RILDYIKPDYVHVLYQGR--IVKSGDFTLVKQLEEQGY 241
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V SGGE+KR + +P L + DE +GLD + + + L ++ ++ T
Sbjct: 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 230 HQPSSELIDMF--DKIILLADSRTAFIGSKDAALAF-LESQGY 269
+Q ++D D + +L R + S D L LE QGY
Sbjct: 223 YQ---RILDYIKPDYVHVLYQGR--IVKSGDFTLVKQLEEQGY 260
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
VLS G ++ + A +L+ +LL DEP+ LD + + R +++
Sbjct: 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ 200
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 172 LSGGERKRLSFATELL-----TDPA--LLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGGE +R+ A +L +PA LLL D+P LD S L +++ L+ Q
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQ 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,300,410
Number of Sequences: 62578
Number of extensions: 624880
Number of successful extensions: 2029
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1912
Number of HSP's gapped (non-prelim): 124
length of query: 622
length of database: 14,973,337
effective HSP length: 105
effective length of query: 517
effective length of database: 8,402,647
effective search space: 4344168499
effective search space used: 4344168499
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)