Query psy2519
Match_columns 622
No_of_seqs 361 out of 3434
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:15:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00955 3a01204 The Eye Pigm 100.0 3E-105 7E-110 909.6 64.2 578 30-622 36-617 (617)
2 KOG0061|consensus 100.0 1E-104 2E-109 897.7 60.1 585 15-622 23-612 (613)
3 PLN03211 ABC transporter G-25; 100.0 1E-101 3E-106 880.7 62.8 571 18-618 69-658 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 2.2E-96 5E-101 895.3 60.3 571 31-618 73-694 (1394)
5 TIGR00956 3a01205 Pleiotropic 100.0 7.7E-96 2E-100 890.5 61.6 580 18-622 760-1394(1394)
6 PLN03140 ABC transporter G fam 100.0 1.5E-95 3E-100 885.2 63.3 580 18-622 868-1470(1470)
7 PLN03140 ABC transporter G fam 100.0 3.2E-94 6.9E-99 873.5 60.5 569 31-618 177-789 (1470)
8 KOG0065|consensus 100.0 1.6E-89 3.5E-94 785.6 38.5 565 30-619 802-1384(1391)
9 KOG0065|consensus 100.0 3.6E-84 7.8E-89 741.6 42.7 569 32-618 128-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 9E-55 2E-59 415.3 21.2 218 17-261 2-224 (240)
11 COG1125 OpuBA ABC-type proline 100.0 5.6E-51 1.2E-55 396.5 20.9 218 17-261 1-224 (309)
12 COG1135 AbcC ABC-type metal io 100.0 4.3E-51 9.3E-56 408.6 20.3 220 17-261 1-230 (339)
13 COG1127 Ttg2A ABC-type transpo 100.0 6.5E-50 1.4E-54 387.5 19.8 221 15-261 6-234 (263)
14 COG1116 TauB ABC-type nitrate/ 100.0 5.8E-49 1.3E-53 386.2 20.6 209 16-252 2-212 (248)
15 COG3842 PotA ABC-type spermidi 100.0 7.1E-49 1.5E-53 408.9 20.1 220 16-261 4-225 (352)
16 COG3839 MalK ABC-type sugar tr 100.0 2E-48 4.3E-53 403.6 21.3 219 17-262 3-223 (338)
17 COG1136 SalX ABC-type antimicr 100.0 6.7E-48 1.5E-52 378.5 21.9 208 18-251 2-220 (226)
18 COG1131 CcmA ABC-type multidru 100.0 2.9E-47 6.4E-52 395.3 24.5 222 17-265 4-229 (293)
19 COG3638 ABC-type phosphate/pho 100.0 7.8E-48 1.7E-52 372.1 18.0 222 17-261 3-236 (258)
20 COG1118 CysA ABC-type sulfate/ 100.0 1.2E-47 2.5E-52 383.0 19.7 221 17-262 2-227 (345)
21 COG2884 FtsE Predicted ATPase 100.0 1.2E-47 2.7E-52 358.5 18.6 213 17-256 1-220 (223)
22 COG1120 FepC ABC-type cobalami 100.0 1.1E-47 2.3E-52 384.2 17.9 221 17-261 2-227 (258)
23 COG4555 NatA ABC-type Na+ tran 100.0 1.3E-47 2.7E-52 361.2 15.5 233 17-285 1-237 (245)
24 COG1117 PstB ABC-type phosphat 100.0 2E-46 4.2E-51 356.5 17.2 221 17-261 7-236 (253)
25 COG1122 CbiO ABC-type cobalt t 100.0 2.3E-45 5E-50 366.9 20.7 221 16-262 2-228 (235)
26 TIGR02314 ABC_MetN D-methionin 100.0 6.8E-45 1.5E-49 384.5 25.0 220 17-261 1-229 (343)
27 PRK11650 ugpC glycerol-3-phosp 100.0 5.3E-45 1.1E-49 388.1 24.3 219 17-261 3-223 (356)
28 PRK13537 nodulation ABC transp 100.0 6.6E-45 1.4E-49 380.8 24.4 218 17-262 7-227 (306)
29 PRK11432 fbpC ferric transport 100.0 7E-45 1.5E-49 386.2 24.9 218 17-261 6-225 (351)
30 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.8E-45 8.2E-50 364.0 21.0 219 16-261 3-226 (254)
31 TIGR03265 PhnT2 putative 2-ami 100.0 7.8E-45 1.7E-49 386.4 24.7 219 17-262 4-224 (353)
32 TIGR03258 PhnT 2-aminoethylpho 100.0 1.4E-44 3E-49 385.2 24.7 219 16-261 4-227 (362)
33 COG3840 ThiQ ABC-type thiamine 100.0 7E-45 1.5E-49 337.3 17.9 216 17-261 1-218 (231)
34 COG1124 DppF ABC-type dipeptid 100.0 1.9E-44 4.2E-49 351.1 19.5 220 16-262 2-231 (252)
35 COG0410 LivF ABC-type branched 100.0 2.8E-44 6E-49 347.8 20.2 218 16-261 2-225 (237)
36 PRK09452 potA putrescine/sperm 100.0 5.7E-44 1.2E-48 381.8 24.6 218 17-261 14-233 (375)
37 PRK10851 sulfate/thiosulfate t 100.0 6.4E-44 1.4E-48 379.4 24.7 220 18-261 3-225 (353)
38 PRK11607 potG putrescine trans 100.0 8.2E-44 1.8E-48 381.2 25.3 218 17-261 19-238 (377)
39 PRK13536 nodulation factor exp 100.0 1.1E-43 2.3E-48 375.9 25.1 218 17-262 41-261 (340)
40 cd03261 ABC_Org_Solvent_Resist 100.0 1.2E-43 2.6E-48 358.1 24.3 218 18-261 1-225 (235)
41 PRK11000 maltose/maltodextrin 100.0 2.8E-43 6E-48 377.1 24.7 217 18-261 4-222 (369)
42 COG0411 LivG ABC-type branched 100.0 8.8E-44 1.9E-48 346.8 18.5 221 17-261 4-238 (250)
43 COG4175 ProV ABC-type proline/ 100.0 8.9E-44 1.9E-48 355.4 18.4 205 32-261 41-253 (386)
44 cd03265 ABC_DrrA DrrA is the A 100.0 5.7E-43 1.2E-47 349.7 23.4 216 18-260 1-219 (220)
45 COG1137 YhbG ABC-type (unclass 100.0 2.8E-44 6.2E-49 338.2 13.1 219 17-261 4-227 (243)
46 TIGR01288 nodI ATP-binding ABC 100.0 5.6E-43 1.2E-47 366.2 24.3 218 17-262 4-224 (303)
47 PRK11153 metN DL-methionine tr 100.0 6.3E-43 1.4E-47 371.3 25.0 220 17-261 1-229 (343)
48 TIGR01186 proV glycine betaine 100.0 8.5E-43 1.9E-47 370.6 25.4 208 29-261 3-218 (363)
49 COG4152 ABC-type uncharacteriz 100.0 2E-43 4.3E-48 341.7 18.6 221 17-265 2-222 (300)
50 cd03259 ABC_Carb_Solutes_like 100.0 7.4E-43 1.6E-47 347.0 22.9 211 18-255 1-213 (213)
51 TIGR00960 3a0501s02 Type II (G 100.0 7.2E-43 1.6E-47 347.9 22.0 209 17-251 1-216 (216)
52 PRK13643 cbiO cobalt transport 100.0 1.3E-42 2.9E-47 360.7 24.5 238 17-281 1-255 (288)
53 PRK13637 cbiO cobalt transport 100.0 3.9E-42 8.5E-47 357.1 27.8 231 18-273 3-248 (287)
54 TIGR01188 drrA daunorubicin re 100.0 1.5E-42 3.3E-47 362.8 24.7 208 29-262 3-213 (302)
55 cd03296 ABC_CysA_sulfate_impor 100.0 1.7E-42 3.6E-47 350.6 24.0 220 18-261 3-225 (239)
56 COG4598 HisP ABC-type histidin 100.0 1.9E-43 4.1E-48 326.8 14.4 218 17-261 6-240 (256)
57 cd03219 ABC_Mj1267_LivG_branch 100.0 2.5E-42 5.5E-47 348.5 24.0 219 18-261 1-231 (236)
58 TIGR03522 GldA_ABC_ATP gliding 100.0 1.9E-42 4E-47 361.8 23.7 216 18-262 3-221 (301)
59 COG4181 Predicted ABC-type tra 100.0 7.3E-43 1.6E-47 320.7 17.6 211 17-253 6-226 (228)
60 cd03301 ABC_MalK_N The N-termi 100.0 2.7E-42 5.9E-47 342.9 23.2 211 18-255 1-213 (213)
61 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.2E-42 7E-47 344.2 23.7 215 18-258 1-219 (220)
62 cd03258 ABC_MetN_methionine_tr 100.0 3.3E-42 7.3E-47 347.0 23.4 218 17-261 1-229 (233)
63 PRK13634 cbiO cobalt transport 100.0 3.4E-42 7.4E-47 358.0 24.2 230 18-273 3-249 (290)
64 PRK13650 cbiO cobalt transport 100.0 7E-42 1.5E-46 353.9 26.0 231 17-273 4-243 (279)
65 PRK15079 oligopeptide ABC tran 100.0 4.5E-42 9.7E-47 362.4 24.9 222 17-261 8-250 (331)
66 cd03218 ABC_YhbG The ABC trans 100.0 4.5E-42 9.7E-47 345.8 23.6 216 18-261 1-221 (232)
67 cd03263 ABC_subfamily_A The AB 100.0 3.9E-42 8.4E-47 343.5 22.6 216 18-260 1-219 (220)
68 cd03266 ABC_NatA_sodium_export 100.0 3.2E-42 6.9E-47 343.7 21.8 210 18-255 2-218 (218)
69 PRK09536 btuD corrinoid ABC tr 100.0 3.3E-42 7.1E-47 370.4 23.3 220 17-261 3-227 (402)
70 cd03269 ABC_putative_ATPase Th 100.0 4.5E-42 9.7E-47 340.7 22.1 210 18-255 1-210 (210)
71 cd03256 ABC_PhnC_transporter A 100.0 6E-42 1.3E-46 346.8 23.2 220 18-261 1-233 (241)
72 PRK11831 putative ABC transpor 100.0 8E-42 1.7E-46 351.7 24.3 219 17-261 7-232 (269)
73 cd03295 ABC_OpuCA_Osmoprotecti 100.0 9.3E-42 2E-46 345.9 23.9 217 18-261 1-224 (242)
74 PRK13651 cobalt transporter AT 100.0 7.3E-42 1.6E-46 357.3 23.8 231 18-274 3-269 (305)
75 TIGR02315 ABC_phnC phosphonate 100.0 4E-42 8.6E-47 348.6 21.1 221 17-260 1-233 (243)
76 PRK13647 cbiO cobalt transport 100.0 1.2E-41 2.7E-46 351.1 24.9 217 17-260 4-225 (274)
77 PRK13635 cbiO cobalt transport 100.0 2.1E-41 4.6E-46 350.2 26.2 219 17-261 5-228 (279)
78 TIGR01257 rim_protein retinal- 100.0 3.6E-39 7.7E-44 394.9 50.2 221 17-264 928-1151(2272)
79 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.5E-42 1.8E-46 340.6 22.3 208 18-251 1-218 (218)
80 PRK11264 putative amino-acid A 100.0 1.2E-41 2.6E-46 346.6 23.8 218 17-261 3-232 (250)
81 PRK10070 glycine betaine trans 100.0 1.2E-41 2.6E-46 365.8 25.1 216 19-261 30-253 (400)
82 PRK13646 cbiO cobalt transport 100.0 1.2E-41 2.6E-46 353.3 24.1 218 18-261 3-234 (286)
83 PRK09493 glnQ glutamine ABC tr 100.0 1.3E-41 2.8E-46 344.3 23.7 217 18-261 2-224 (240)
84 PRK13631 cbiO cobalt transport 100.0 1.6E-41 3.4E-46 356.9 25.0 230 17-273 21-279 (320)
85 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2E-41 4.4E-46 342.1 24.8 217 17-261 1-220 (236)
86 cd03260 ABC_PstB_phosphate_tra 100.0 7.5E-42 1.6E-46 343.1 21.3 213 18-259 1-226 (227)
87 cd03224 ABC_TM1139_LivF_branch 100.0 1.2E-41 2.7E-46 340.2 22.5 214 18-261 1-220 (222)
88 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2E-41 4.4E-46 348.7 24.7 216 19-261 26-249 (269)
89 COG4525 TauB ABC-type taurine 100.0 6.7E-42 1.5E-46 320.6 19.1 217 17-259 3-221 (259)
90 PRK11308 dppF dipeptide transp 100.0 2.1E-41 4.6E-46 357.0 25.0 222 16-261 4-243 (327)
91 cd03268 ABC_BcrA_bacitracin_re 100.0 7.1E-42 1.5E-46 338.7 20.0 206 18-255 1-208 (208)
92 PRK11629 lolD lipoprotein tran 100.0 3.3E-41 7.2E-46 339.9 24.4 215 17-257 5-229 (233)
93 COG0444 DppD ABC-type dipeptid 100.0 2.6E-41 5.5E-46 343.1 23.3 224 18-261 2-242 (316)
94 PRK13636 cbiO cobalt transport 100.0 3.4E-41 7.4E-46 349.4 24.6 219 17-261 5-230 (283)
95 cd03226 ABC_cobalt_CbiO_domain 100.0 1.5E-41 3.3E-46 335.7 20.9 202 19-252 1-205 (205)
96 TIGR00972 3a0107s01c2 phosphat 100.0 3.5E-41 7.5E-46 342.7 24.1 219 17-261 1-231 (247)
97 TIGR02673 FtsE cell division A 100.0 2.5E-41 5.4E-46 336.2 22.0 206 18-250 2-214 (214)
98 PRK10895 lipopolysaccharide AB 100.0 3.1E-41 6.8E-46 341.7 23.1 218 17-261 3-225 (241)
99 PRK10619 histidine/lysine/argi 100.0 5.8E-41 1.3E-45 343.1 25.0 218 16-261 4-240 (257)
100 PRK11248 tauB taurine transpor 100.0 4.2E-41 9.1E-46 343.6 23.8 214 17-258 1-216 (255)
101 cd03264 ABC_drug_resistance_li 100.0 2.4E-41 5.2E-46 335.7 21.0 208 18-255 1-211 (211)
102 PRK11300 livG leucine/isoleuci 100.0 4.8E-41 1E-45 343.2 23.4 221 17-261 5-242 (255)
103 PRK11022 dppD dipeptide transp 100.0 8.2E-41 1.8E-45 352.5 25.7 224 17-261 3-242 (326)
104 PRK09473 oppD oligopeptide tra 100.0 9E-41 2E-45 352.6 25.8 224 17-261 12-250 (330)
105 PRK13641 cbiO cobalt transport 100.0 5.6E-41 1.2E-45 348.5 23.7 217 18-261 3-233 (287)
106 PRK13548 hmuV hemin importer A 100.0 5.2E-41 1.1E-45 343.6 23.1 218 17-261 2-229 (258)
107 TIGR03005 ectoine_ehuA ectoine 100.0 7.3E-41 1.6E-45 341.4 24.0 218 18-261 1-235 (252)
108 PRK13638 cbiO cobalt transport 100.0 7.1E-41 1.5E-45 345.0 23.9 217 17-261 1-224 (271)
109 cd03292 ABC_FtsE_transporter F 100.0 5.3E-41 1.2E-45 333.8 22.1 207 18-251 1-214 (214)
110 PRK13652 cbiO cobalt transport 100.0 8.4E-41 1.8E-45 345.5 23.9 219 17-261 3-226 (277)
111 PRK13644 cbiO cobalt transport 100.0 1E-40 2.2E-45 344.3 24.3 217 17-261 1-223 (274)
112 PRK13640 cbiO cobalt transport 100.0 8.4E-41 1.8E-45 346.3 23.7 222 17-261 5-231 (282)
113 PRK10908 cell division protein 100.0 8.7E-41 1.9E-45 334.4 22.9 209 18-253 2-217 (222)
114 COG4161 ArtP ABC-type arginine 100.0 1.9E-41 4.1E-46 308.4 16.3 214 18-258 3-226 (242)
115 TIGR03411 urea_trans_UrtD urea 100.0 1.2E-40 2.6E-45 337.6 24.0 219 17-261 2-230 (242)
116 PRK11614 livF leucine/isoleuci 100.0 6.3E-41 1.4E-45 338.7 21.8 215 17-261 5-225 (237)
117 PRK13633 cobalt transporter AT 100.0 1.2E-40 2.5E-45 345.0 24.1 219 17-261 4-232 (280)
118 cd03235 ABC_Metallic_Cations A 100.0 5.6E-41 1.2E-45 333.6 20.8 210 19-255 1-213 (213)
119 cd03257 ABC_NikE_OppD_transpor 100.0 9.6E-41 2.1E-45 335.1 22.6 214 18-255 2-228 (228)
120 PRK10575 iron-hydroxamate tran 100.0 1.1E-40 2.3E-45 342.6 23.4 221 17-261 11-236 (265)
121 PRK13632 cbiO cobalt transport 100.0 1E-40 2.3E-45 343.8 23.4 219 17-261 7-230 (271)
122 TIGR03415 ABC_choXWV_ATP choli 100.0 1.3E-40 2.7E-45 355.5 24.8 208 29-261 34-253 (382)
123 cd03225 ABC_cobalt_CbiO_domain 100.0 8.9E-41 1.9E-45 331.5 22.0 206 19-250 1-211 (211)
124 PRK11247 ssuB aliphatic sulfon 100.0 7.5E-41 1.6E-45 341.7 22.0 209 16-258 11-219 (257)
125 TIGR02769 nickel_nikE nickel i 100.0 1.2E-40 2.7E-45 342.2 23.8 221 17-261 2-239 (265)
126 PRK11144 modC molybdate transp 100.0 1E-40 2.3E-45 355.5 24.0 209 17-261 1-217 (352)
127 PRK11124 artP arginine transpo 100.0 1.2E-40 2.6E-45 337.6 23.1 215 18-260 3-228 (242)
128 PRK15093 antimicrobial peptide 100.0 1.6E-40 3.5E-45 351.2 24.8 226 17-261 3-247 (330)
129 PRK13639 cbiO cobalt transport 100.0 1.9E-40 4E-45 342.6 24.5 217 18-261 2-225 (275)
130 PRK09984 phosphonate/organopho 100.0 1E-40 2.2E-45 342.2 22.4 223 17-260 4-240 (262)
131 TIGR03410 urea_trans_UrtE urea 100.0 9E-41 1.9E-45 336.0 21.4 213 18-260 1-219 (230)
132 TIGR02211 LolD_lipo_ex lipopro 100.0 1.6E-40 3.4E-45 332.1 22.9 209 18-252 2-220 (221)
133 TIGR02142 modC_ABC molybdenum 100.0 1.7E-40 3.7E-45 354.3 24.6 209 22-261 4-220 (354)
134 PRK13648 cbiO cobalt transport 100.0 2.3E-40 5E-45 340.9 24.7 219 17-261 7-230 (269)
135 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.1E-40 2.3E-45 331.1 21.4 209 18-255 1-211 (211)
136 cd03234 ABCG_White The White s 100.0 2.1E-40 4.5E-45 332.6 23.5 217 17-255 3-226 (226)
137 cd03262 ABC_HisP_GlnQ_permease 100.0 1.2E-40 2.7E-45 330.9 21.7 207 18-251 1-213 (213)
138 PRK10253 iron-enterobactin tra 100.0 1E-40 2.2E-45 342.8 21.7 222 16-261 6-232 (265)
139 PRK11231 fecE iron-dicitrate t 100.0 1.2E-40 2.6E-45 340.4 21.7 219 18-261 3-226 (255)
140 PRK15112 antimicrobial peptide 100.0 2.1E-40 4.6E-45 340.7 23.5 222 16-261 3-238 (267)
141 PRK10771 thiQ thiamine transpo 100.0 1.6E-40 3.4E-45 334.8 22.0 216 17-261 1-218 (232)
142 PRK14247 phosphate ABC transpo 100.0 2.8E-40 6.1E-45 336.6 24.1 221 17-261 3-233 (250)
143 PRK13649 cbiO cobalt transport 100.0 4.3E-40 9.3E-45 340.8 25.3 217 18-261 3-233 (280)
144 TIGR01978 sufC FeS assembly AT 100.0 4E-40 8.6E-45 333.9 24.3 219 18-261 1-233 (243)
145 PRK14268 phosphate ABC transpo 100.0 3.5E-40 7.6E-45 337.5 24.1 218 17-261 12-241 (258)
146 PRK14273 phosphate ABC transpo 100.0 2.6E-40 5.6E-45 337.7 23.1 221 15-261 5-237 (254)
147 cd03267 ABC_NatA_like Similar 100.0 4E-40 8.7E-45 332.7 24.0 202 29-255 31-236 (236)
148 PRK14250 phosphate ABC transpo 100.0 1.9E-40 4.2E-45 336.1 21.7 213 17-261 3-220 (241)
149 TIGR03873 F420-0_ABC_ATP propo 100.0 2.7E-40 5.9E-45 337.9 23.0 219 18-261 2-225 (256)
150 TIGR03740 galliderm_ABC gallid 100.0 2.3E-40 4.9E-45 331.6 21.7 209 18-258 1-209 (223)
151 PRK13642 cbiO cobalt transport 100.0 4.7E-40 1E-44 339.9 24.3 219 17-261 4-228 (277)
152 TIGR01277 thiQ thiamine ABC tr 100.0 4E-40 8.6E-45 327.6 22.7 210 18-256 1-212 (213)
153 PRK14267 phosphate ABC transpo 100.0 4.6E-40 9.9E-45 335.6 23.5 221 17-261 4-236 (253)
154 cd03300 ABC_PotA_N PotA is an 100.0 7.6E-40 1.7E-44 329.8 24.5 217 18-261 1-219 (232)
155 PRK10584 putative ABC transpor 100.0 5.2E-40 1.1E-44 330.0 23.1 212 17-254 6-227 (228)
156 PRK13645 cbiO cobalt transport 100.0 4.3E-40 9.4E-45 342.3 23.2 220 16-261 5-239 (289)
157 cd03297 ABC_ModC_molybdenum_tr 100.0 5.3E-40 1.2E-44 326.8 22.6 202 22-255 5-214 (214)
158 TIGR00968 3a0106s01 sulfate AB 100.0 7.7E-40 1.7E-44 330.8 24.0 217 18-261 1-219 (237)
159 cd03299 ABC_ModC_like Archeal 100.0 1E-39 2.2E-44 329.5 24.5 216 18-261 1-218 (235)
160 PRK14242 phosphate transporter 100.0 7.3E-40 1.6E-44 334.1 23.4 219 17-261 6-236 (253)
161 PRK13547 hmuV hemin importer A 100.0 5.9E-40 1.3E-44 337.8 22.1 224 17-261 1-243 (272)
162 PRK14256 phosphate ABC transpo 100.0 1.6E-39 3.4E-44 331.5 24.5 221 16-261 3-235 (252)
163 PRK14241 phosphate transporter 100.0 1.5E-39 3.2E-44 332.9 24.4 220 17-261 4-241 (258)
164 PRK14269 phosphate ABC transpo 100.0 1.7E-39 3.6E-44 330.2 24.4 220 17-261 2-229 (246)
165 PRK14274 phosphate ABC transpo 100.0 1.7E-39 3.6E-44 332.7 24.2 220 16-261 11-242 (259)
166 PRK13549 xylose transporter AT 100.0 5.9E-40 1.3E-44 366.9 21.9 221 17-260 5-230 (506)
167 PRK10744 pstB phosphate transp 100.0 1.7E-39 3.6E-44 332.9 23.3 220 16-261 12-243 (260)
168 COG1123 ATPase components of v 100.0 1.3E-39 2.9E-44 352.8 23.5 227 17-262 5-244 (539)
169 PRK14235 phosphate transporter 100.0 2.2E-39 4.7E-44 333.3 23.9 220 17-261 19-250 (267)
170 COG1123 ATPase components of v 100.0 1.2E-39 2.6E-44 353.2 22.9 222 16-261 279-518 (539)
171 PRK11701 phnK phosphonate C-P 100.0 2.2E-39 4.9E-44 331.5 23.7 219 17-261 6-240 (258)
172 PRK10762 D-ribose transporter 100.0 9E-40 1.9E-44 365.0 22.5 219 17-260 4-228 (501)
173 PRK14245 phosphate ABC transpo 100.0 2.5E-39 5.3E-44 329.7 23.4 218 17-261 3-233 (250)
174 PRK10418 nikD nickel transport 100.0 2.8E-39 6E-44 330.1 23.2 218 17-261 4-229 (254)
175 PRK15439 autoinducer 2 ABC tra 100.0 1.7E-39 3.8E-44 363.1 23.5 213 17-261 11-228 (510)
176 PRK14272 phosphate ABC transpo 100.0 4.1E-39 8.8E-44 328.4 23.9 220 17-261 4-235 (252)
177 PRK14270 phosphate ABC transpo 100.0 3.8E-39 8.3E-44 328.5 23.6 221 15-261 2-234 (251)
178 cd03252 ABCC_Hemolysin The ABC 100.0 1E-39 2.2E-44 329.9 18.9 218 18-261 1-224 (237)
179 PRK09700 D-allose transporter 100.0 1.8E-39 4E-44 363.3 22.8 219 17-260 5-232 (510)
180 PRK14240 phosphate transporter 100.0 5.9E-39 1.3E-43 326.9 24.3 219 17-261 3-233 (250)
181 PRK14239 phosphate transporter 100.0 5.5E-39 1.2E-43 327.4 24.0 219 17-261 5-235 (252)
182 PRK14244 phosphate ABC transpo 100.0 5.5E-39 1.2E-43 327.3 23.9 218 19-261 7-236 (251)
183 PRK14262 phosphate ABC transpo 100.0 6.2E-39 1.3E-43 326.7 24.2 219 17-261 3-233 (250)
184 TIGR02323 CP_lyasePhnK phospho 100.0 4.3E-39 9.4E-44 328.4 23.1 220 16-261 2-237 (253)
185 COG4148 ModC ABC-type molybdat 100.0 4.8E-40 1E-44 323.5 14.8 204 24-261 5-217 (352)
186 PRK14258 phosphate ABC transpo 100.0 6.8E-39 1.5E-43 328.5 24.0 221 17-261 7-244 (261)
187 PRK14248 phosphate ABC transpo 100.0 5.1E-39 1.1E-43 330.7 23.1 219 17-261 21-251 (268)
188 TIGR03608 L_ocin_972_ABC putat 100.0 5.1E-39 1.1E-43 317.7 22.2 198 20-246 1-206 (206)
189 COG2274 SunT ABC-type bacterio 100.0 6.9E-40 1.5E-44 372.2 18.2 229 10-262 464-696 (709)
190 TIGR01257 rim_protein retinal- 100.0 2.8E-39 6E-44 395.9 24.7 225 15-265 1935-2162(2272)
191 PRK14259 phosphate ABC transpo 100.0 3.8E-39 8.2E-44 331.8 22.0 219 15-261 11-252 (269)
192 TIGR01184 ntrCD nitrate transp 100.0 4.7E-39 1E-43 323.6 22.0 201 35-259 1-201 (230)
193 PRK14249 phosphate ABC transpo 100.0 8.3E-39 1.8E-43 326.0 24.0 219 17-261 4-234 (251)
194 PRK10419 nikE nickel transport 100.0 7.4E-39 1.6E-43 329.5 23.7 221 17-261 3-240 (268)
195 PRK14237 phosphate transporter 100.0 1.3E-38 2.7E-43 327.6 25.5 227 9-261 9-250 (267)
196 TIGR02982 heterocyst_DevA ABC 100.0 4.8E-39 1E-43 321.4 21.6 209 18-251 2-219 (220)
197 PRK14253 phosphate ABC transpo 100.0 8.4E-39 1.8E-43 325.6 23.4 219 17-261 3-232 (249)
198 PRK10261 glutathione transport 100.0 7.2E-39 1.6E-43 365.6 25.4 221 17-261 313-552 (623)
199 PRK14251 phosphate ABC transpo 100.0 1E-38 2.2E-43 325.4 23.6 219 17-261 4-234 (251)
200 cd03233 ABC_PDR_domain1 The pl 100.0 8.2E-39 1.8E-43 315.5 21.8 194 18-255 4-202 (202)
201 PRK10982 galactose/methyl gala 100.0 7.5E-39 1.6E-43 356.8 24.2 216 20-260 1-221 (491)
202 PRK14255 phosphate ABC transpo 100.0 1.5E-38 3.3E-43 324.2 24.4 220 16-261 4-235 (252)
203 TIGR02770 nickel_nikD nickel i 100.0 1.1E-38 2.5E-43 320.8 23.2 206 34-261 1-214 (230)
204 PRK14260 phosphate ABC transpo 100.0 1.1E-38 2.4E-43 326.6 23.4 219 17-261 7-242 (259)
205 cd03251 ABCC_MsbA MsbA is an e 100.0 3.5E-39 7.5E-44 325.2 19.2 218 18-261 1-224 (234)
206 PRK14275 phosphate ABC transpo 100.0 1.4E-38 3E-43 330.3 23.8 219 17-261 39-269 (286)
207 CHL00131 ycf16 sulfate ABC tra 100.0 2E-38 4.4E-43 323.3 24.3 222 15-260 5-239 (252)
208 COG4604 CeuD ABC-type enteroch 100.0 5.1E-40 1.1E-44 308.6 11.4 220 17-261 1-224 (252)
209 PRK14261 phosphate ABC transpo 100.0 1.8E-38 4E-43 323.9 23.9 219 17-261 6-236 (253)
210 PRK14236 phosphate transporter 100.0 1.9E-38 4.1E-43 327.2 24.1 219 17-261 25-255 (272)
211 PRK03695 vitamin B12-transport 100.0 1.5E-38 3.1E-43 323.7 22.9 209 19-261 2-221 (248)
212 PRK10261 glutathione transport 100.0 1E-38 2.2E-43 364.3 23.6 222 16-261 11-257 (623)
213 COG4988 CydD ABC-type transpor 100.0 4E-39 8.7E-44 347.7 18.9 222 8-261 309-542 (559)
214 PRK14257 phosphate ABC transpo 100.0 2.4E-38 5.3E-43 333.8 24.4 226 16-261 79-312 (329)
215 PRK14246 phosphate ABC transpo 100.0 2.4E-38 5.1E-43 323.7 23.6 221 16-261 9-240 (257)
216 PRK15134 microcin C ABC transp 100.0 1.8E-38 3.8E-43 356.8 24.3 222 16-261 274-514 (529)
217 PRK14238 phosphate transporter 100.0 2.2E-38 4.8E-43 326.4 23.0 219 17-261 24-254 (271)
218 TIGR03269 met_CoM_red_A2 methy 100.0 1.9E-38 4E-43 356.0 24.4 219 18-263 1-259 (520)
219 PRK11288 araG L-arabinose tran 100.0 1.5E-38 3.2E-43 355.1 23.3 216 17-257 4-224 (501)
220 TIGR02633 xylG D-xylose ABC tr 100.0 1.6E-38 3.4E-43 355.1 23.4 219 18-259 2-227 (500)
221 PRK14254 phosphate ABC transpo 100.0 2.9E-38 6.4E-43 327.6 23.7 217 17-261 39-268 (285)
222 PRK14243 phosphate transporter 100.0 2.3E-38 4.9E-43 325.2 22.3 218 16-261 9-247 (264)
223 TIGR01187 potA spermidine/putr 100.0 1.8E-38 3.8E-43 335.0 22.0 183 64-261 5-189 (325)
224 PRK14271 phosphate ABC transpo 100.0 3.7E-38 8.1E-43 325.4 24.0 219 17-261 21-250 (276)
225 PRK10247 putative ABC transpor 100.0 1.3E-38 2.9E-43 319.3 19.6 210 16-256 6-221 (225)
226 PRK15056 manganese/iron transp 100.0 2.3E-38 5E-43 326.5 21.7 219 17-260 6-228 (272)
227 PRK14265 phosphate ABC transpo 100.0 4.7E-38 1E-42 324.4 24.0 228 6-261 9-257 (274)
228 TIGR03269 met_CoM_red_A2 methy 100.0 3.3E-38 7.2E-43 354.0 24.5 220 17-262 279-517 (520)
229 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.3E-38 2.7E-43 322.0 18.9 216 18-262 1-226 (238)
230 PRK15134 microcin C ABC transp 100.0 3.3E-38 7.2E-43 354.6 24.2 224 17-261 5-245 (529)
231 PRK13538 cytochrome c biogenes 100.0 2.4E-38 5.2E-43 312.7 20.3 199 17-246 1-202 (204)
232 cd03254 ABCC_Glucan_exporter_l 100.0 1.3E-38 2.8E-43 320.0 18.1 218 17-261 2-225 (229)
233 PRK13543 cytochrome c biogenes 100.0 5.8E-38 1.3E-42 312.3 21.8 201 17-248 11-212 (214)
234 PRK13549 xylose transporter AT 100.0 2.7E-38 5.8E-43 353.5 21.7 222 17-260 259-492 (506)
235 PRK11174 cysteine/glutathione 100.0 1.9E-38 4.2E-43 361.2 20.7 212 17-261 349-571 (588)
236 COG4559 ABC-type hemin transpo 100.0 2.1E-38 4.5E-43 301.1 17.2 219 17-261 1-229 (259)
237 PRK09580 sufC cysteine desulfu 100.0 1.2E-37 2.5E-42 316.8 23.9 224 17-266 1-238 (248)
238 COG1129 MglA ABC-type sugar tr 100.0 3.5E-38 7.5E-43 339.7 21.0 216 17-257 8-229 (500)
239 cd03213 ABCG_EPDR ABCG transpo 100.0 5.5E-38 1.2E-42 307.7 20.6 185 17-255 3-194 (194)
240 PRK14263 phosphate ABC transpo 100.0 1.4E-37 3.1E-42 318.6 24.5 216 18-261 9-244 (261)
241 cd03232 ABC_PDR_domain2 The pl 100.0 6.2E-38 1.3E-42 306.9 20.5 187 15-255 1-192 (192)
242 PRK14266 phosphate ABC transpo 100.0 1E-37 2.3E-42 317.7 22.9 218 18-261 4-233 (250)
243 KOG0055|consensus 100.0 3.9E-37 8.4E-42 355.2 30.0 227 12-262 345-576 (1228)
244 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.3E-38 5.1E-43 366.4 19.9 214 14-261 448-672 (686)
245 PRK11176 lipid transporter ATP 100.0 1.8E-38 4E-43 361.0 18.3 216 16-261 340-566 (582)
246 cd03245 ABCC_bacteriocin_expor 100.0 2.6E-38 5.6E-43 315.9 17.2 211 18-255 3-220 (220)
247 cd03253 ABCC_ATM1_transporter 100.0 4.4E-38 9.6E-43 317.6 19.0 212 18-261 1-223 (236)
248 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.7E-37 3.7E-42 311.1 22.9 202 18-255 23-224 (224)
249 cd03231 ABC_CcmA_heme_exporter 100.0 9.4E-38 2E-42 307.7 20.0 195 18-246 1-198 (201)
250 KOG0058|consensus 100.0 2.1E-38 4.7E-43 347.9 16.2 225 13-261 461-690 (716)
251 KOG0057|consensus 100.0 2.3E-38 5E-43 336.8 15.6 220 9-262 343-574 (591)
252 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.7E-38 1.4E-42 322.5 18.5 217 17-262 2-225 (275)
253 PRK14264 phosphate ABC transpo 100.0 3E-37 6.6E-42 323.0 23.8 221 17-261 45-288 (305)
254 PRK14252 phosphate ABC transpo 100.0 2.8E-37 6.2E-42 317.3 23.0 219 17-261 16-248 (265)
255 PRK09544 znuC high-affinity zi 100.0 2.4E-37 5.1E-42 315.1 21.8 203 17-261 4-208 (251)
256 cd03248 ABCC_TAP TAP, the Tran 100.0 4.7E-38 1E-42 315.4 15.6 212 14-251 8-226 (226)
257 PRK09700 D-allose transporter 100.0 1.5E-37 3.3E-42 347.9 21.4 214 17-257 265-493 (510)
258 TIGR01842 type_I_sec_PrtD type 100.0 1.2E-37 2.7E-42 351.2 20.2 219 15-261 314-541 (544)
259 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6.6E-38 1.4E-42 364.1 18.3 216 14-262 474-700 (710)
260 cd03244 ABCC_MRP_domain2 Domai 100.0 1.2E-37 2.7E-42 311.2 17.2 203 18-256 3-220 (221)
261 TIGR02633 xylG D-xylose ABC tr 100.0 2.3E-37 5.1E-42 345.6 21.4 220 17-258 257-488 (500)
262 PRK10938 putative molybdenum t 100.0 1.3E-37 2.9E-42 346.7 19.1 209 17-261 3-223 (490)
263 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.2E-37 9.2E-42 302.9 20.4 188 18-265 1-196 (200)
264 TIGR01189 ccmA heme ABC export 100.0 4.2E-37 9E-42 302.4 20.1 194 18-245 1-197 (198)
265 PRK11160 cysteine/glutathione 100.0 1.4E-37 3.1E-42 352.5 19.3 215 16-261 337-561 (574)
266 cd03288 ABCC_SUR2 The SUR doma 100.0 2.6E-37 5.7E-42 316.1 19.0 225 10-261 12-242 (257)
267 PRK10790 putative multidrug tr 100.0 2E-37 4.3E-42 353.1 20.1 213 16-261 339-562 (592)
268 PRK13539 cytochrome c biogenes 100.0 3.5E-37 7.6E-42 305.1 19.2 198 17-248 2-200 (207)
269 cd03230 ABC_DR_subfamily_A Thi 100.0 5.4E-37 1.2E-41 295.2 19.8 169 19-251 2-173 (173)
270 PRK13540 cytochrome c biogenes 100.0 5.4E-37 1.2E-41 302.1 19.9 193 18-244 2-197 (200)
271 TIGR02324 CP_lyasePhnL phospho 100.0 9.4E-37 2E-41 305.6 21.9 205 17-247 1-223 (224)
272 PRK13546 teichoic acids export 100.0 2.5E-36 5.3E-41 309.5 25.3 198 30-262 35-232 (264)
273 TIGR03375 type_I_sec_LssB type 100.0 2E-37 4.3E-42 359.1 19.1 218 15-263 461-689 (694)
274 COG1132 MdlB ABC-type multidru 100.0 1.9E-37 4.2E-42 351.4 18.2 222 16-262 327-552 (567)
275 COG4987 CydC ABC-type transpor 100.0 5.3E-38 1.2E-42 333.8 12.2 215 17-262 336-561 (573)
276 COG4172 ABC-type uncharacteriz 100.0 1.1E-36 2.5E-41 312.4 21.1 220 18-261 277-515 (534)
277 TIGR01193 bacteriocin_ABC ABC- 100.0 2.6E-37 5.7E-42 358.8 18.5 216 15-262 471-697 (708)
278 cd03215 ABC_Carb_Monos_II This 100.0 9.9E-37 2.1E-41 295.8 19.1 171 17-251 4-182 (182)
279 PRK10762 D-ribose transporter 100.0 8.3E-37 1.8E-41 341.1 21.2 214 17-260 257-482 (501)
280 PRK13657 cyclic beta-1,2-gluca 100.0 5.7E-37 1.2E-41 349.0 20.1 215 15-261 332-557 (588)
281 TIGR03771 anch_rpt_ABC anchore 100.0 1.7E-36 3.7E-41 303.6 21.0 194 48-261 4-200 (223)
282 PRK13545 tagH teichoic acids e 100.0 3.5E-36 7.6E-41 327.4 24.9 212 16-262 20-232 (549)
283 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.2E-36 2.6E-41 301.2 18.8 198 17-257 6-207 (207)
284 COG3845 ABC-type uncharacteriz 100.0 1.2E-36 2.7E-41 321.3 19.9 216 16-256 3-223 (501)
285 TIGR01846 type_I_sec_HlyB type 100.0 5.6E-37 1.2E-41 355.2 19.0 217 14-261 452-679 (694)
286 cd03229 ABC_Class3 This class 100.0 1.3E-36 2.9E-41 293.9 18.3 172 18-250 1-178 (178)
287 cd03214 ABC_Iron-Siderophores_ 100.0 7.3E-37 1.6E-41 296.2 16.5 176 19-255 1-180 (180)
288 cd03246 ABCC_Protease_Secretio 100.0 1.3E-36 2.8E-41 292.5 18.1 169 18-251 1-173 (173)
289 PRK11288 araG L-arabinose tran 100.0 9.7E-37 2.1E-41 340.5 19.8 214 18-260 258-483 (501)
290 TIGR01166 cbiO cobalt transpor 100.0 2.8E-36 6.2E-41 294.5 20.5 178 30-232 3-187 (190)
291 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-36 3.5E-41 339.2 21.3 214 17-260 268-490 (510)
292 TIGR00958 3a01208 Conjugate Tr 100.0 6.2E-37 1.3E-41 355.0 17.7 214 16-262 477-702 (711)
293 cd03247 ABCC_cytochrome_bd The 100.0 1.7E-36 3.6E-41 293.1 17.8 175 18-255 1-178 (178)
294 TIGR02203 MsbA_lipidA lipid A 100.0 9.1E-37 2E-41 346.4 18.2 217 15-261 328-555 (571)
295 PRK10789 putative multidrug tr 100.0 1.3E-36 2.7E-41 344.6 18.4 215 16-261 312-537 (569)
296 TIGR01192 chvA glucan exporter 100.0 4.5E-36 9.9E-41 340.8 19.8 214 16-261 333-557 (585)
297 cd03237 ABC_RNaseL_inhibitor_d 100.0 2E-35 4.4E-40 299.8 22.4 202 25-259 1-204 (246)
298 TIGR02204 MsbA_rel ABC transpo 100.0 3E-36 6.5E-41 342.5 18.1 215 16-261 336-562 (576)
299 COG4619 ABC-type uncharacteriz 100.0 1.1E-36 2.4E-41 279.1 10.8 203 19-251 5-212 (223)
300 COG4674 Uncharacterized ABC-ty 100.0 2.2E-36 4.8E-41 283.6 13.1 220 16-261 4-234 (249)
301 PRK10535 macrolide transporter 100.0 2.1E-35 4.5E-40 338.4 23.8 218 17-261 4-231 (648)
302 PTZ00265 multidrug resistance 100.0 3.9E-36 8.5E-41 367.8 17.8 221 15-261 1163-1451(1466)
303 cd03250 ABCC_MRP_domain1 Domai 100.0 1.3E-35 2.9E-40 293.1 17.8 193 18-250 1-204 (204)
304 PRK13541 cytochrome c biogenes 100.0 3E-35 6.5E-40 288.5 19.0 191 18-243 2-192 (195)
305 PRK15064 ABC transporter ATP-b 100.0 4.4E-35 9.6E-40 329.4 22.7 210 17-261 1-241 (530)
306 COG1101 PhnK ABC-type uncharac 100.0 1.7E-35 3.7E-40 281.9 16.1 218 17-256 1-232 (263)
307 COG1119 ModF ABC-type molybden 100.0 8.6E-36 1.9E-40 290.9 14.2 218 15-256 29-256 (257)
308 PRK10982 galactose/methyl gala 100.0 3.3E-35 7.2E-40 327.5 20.8 215 17-258 250-476 (491)
309 cd03290 ABCC_SUR1_N The SUR do 100.0 5.4E-35 1.2E-39 291.7 20.1 196 19-250 2-218 (218)
310 PRK10938 putative molybdenum t 100.0 2.6E-35 5.7E-40 328.3 19.7 216 16-255 259-485 (490)
311 cd03228 ABCC_MRP_Like The MRP 100.0 3.9E-35 8.4E-40 281.8 17.1 167 18-250 1-171 (171)
312 COG4608 AppF ABC-type oligopep 100.0 5.1E-35 1.1E-39 291.3 18.2 187 17-261 4-198 (268)
313 KOG0055|consensus 100.0 1.5E-35 3.3E-40 342.1 16.1 221 13-262 983-1213(1228)
314 PRK11819 putative ABC transpor 100.0 8.1E-35 1.8E-39 328.7 21.7 209 17-261 6-249 (556)
315 COG4172 ABC-type uncharacteriz 100.0 1.2E-34 2.7E-39 297.5 19.9 228 16-261 5-246 (534)
316 cd03216 ABC_Carb_Monos_I This 100.0 1.4E-34 3.1E-39 275.7 18.6 157 18-253 1-162 (163)
317 PLN03130 ABC transporter C fam 100.0 4.6E-35 1E-39 361.6 19.2 215 16-262 1236-1461(1622)
318 PRK15064 ABC transporter ATP-b 100.0 1.2E-34 2.7E-39 325.7 21.0 203 16-261 318-524 (530)
319 PLN03232 ABC transporter C fam 100.0 3.4E-35 7.3E-40 362.4 17.6 214 16-261 1233-1457(1495)
320 COG4586 ABC-type uncharacteriz 100.0 5.7E-35 1.2E-39 287.2 14.9 209 32-265 37-249 (325)
321 PRK10522 multidrug transporter 100.0 1E-34 2.2E-39 327.6 18.9 205 17-254 322-530 (547)
322 PTZ00243 ABC transporter; Prov 100.0 9.5E-35 2.1E-39 358.2 20.2 214 16-261 1307-1532(1560)
323 TIGR02857 CydD thiol reductant 100.0 5.3E-35 1.1E-39 328.9 16.3 199 17-246 320-529 (529)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.9E-34 4.1E-39 325.5 20.6 211 17-262 4-248 (552)
325 cd03291 ABCC_CFTR1 The CFTR su 100.0 6E-34 1.3E-38 294.2 21.5 206 11-261 33-246 (282)
326 PRK15177 Vi polysaccharide exp 100.0 5.6E-34 1.2E-38 283.4 20.4 193 34-265 2-195 (213)
327 TIGR02868 CydC thiol reductant 100.0 7.1E-35 1.5E-39 327.9 15.7 187 16-232 333-529 (529)
328 TIGR00957 MRP_assoc_pro multi 100.0 1.7E-34 3.8E-39 356.6 19.8 215 16-262 1283-1508(1522)
329 cd03223 ABCD_peroxisomal_ALDP 100.0 4.5E-34 9.8E-39 273.0 18.2 163 18-249 1-163 (166)
330 COG0396 sufC Cysteine desulfur 100.0 1.4E-33 2.9E-38 272.3 20.1 231 17-271 3-242 (251)
331 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.5E-34 7.7E-39 323.5 18.7 208 16-254 336-551 (555)
332 KOG0059|consensus 100.0 2.3E-34 5.1E-39 338.6 17.9 227 11-265 558-790 (885)
333 PRK13409 putative ATPase RIL; 100.0 8.1E-34 1.8E-38 320.5 21.5 198 17-257 340-537 (590)
334 COG4618 ArpD ABC-type protease 100.0 3.4E-34 7.4E-39 302.2 17.1 227 16-265 333-563 (580)
335 PRK11819 putative ABC transpor 100.0 1.2E-33 2.6E-38 319.2 21.2 205 16-260 323-531 (556)
336 COG4167 SapF ABC-type antimicr 100.0 2.2E-33 4.7E-38 260.6 18.3 221 17-261 4-238 (267)
337 PTZ00265 multidrug resistance 100.0 7.1E-34 1.5E-38 348.0 19.8 213 17-249 382-655 (1466)
338 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.2E-33 2.6E-38 288.0 18.3 199 21-255 4-220 (255)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-33 3.7E-38 317.8 21.3 204 16-259 321-528 (552)
340 TIGR01271 CFTR_protein cystic 100.0 1.1E-33 2.3E-38 348.6 21.3 213 16-261 1216-1439(1490)
341 KOG0056|consensus 100.0 1.9E-34 4.1E-39 300.7 9.8 222 15-261 535-760 (790)
342 PRK10636 putative ABC transpor 100.0 9.3E-33 2E-37 315.7 20.7 203 16-262 311-517 (638)
343 PRK11147 ABC transporter ATPas 100.0 2.5E-32 5.3E-37 312.8 19.7 204 17-260 319-526 (635)
344 COG4136 ABC-type uncharacteriz 100.0 1.5E-32 3.3E-37 247.5 13.9 195 17-236 2-198 (213)
345 cd03222 ABC_RNaseL_inhibitor T 100.0 8.4E-32 1.8E-36 259.1 18.2 154 21-258 4-159 (177)
346 PLN03073 ABC transporter F fam 100.0 9.7E-32 2.1E-36 308.9 22.2 206 16-262 507-714 (718)
347 PRK10636 putative ABC transpor 100.0 5.9E-32 1.3E-36 309.2 20.3 208 17-260 1-234 (638)
348 TIGR00954 3a01203 Peroxysomal 100.0 5E-32 1.1E-36 310.8 18.1 203 15-247 449-652 (659)
349 COG1134 TagH ABC-type polysacc 100.0 2.4E-31 5.2E-36 260.1 18.7 215 18-267 25-241 (249)
350 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.9E-31 4.2E-36 248.8 17.2 143 19-250 2-144 (144)
351 COG4107 PhnK ABC-type phosphon 100.0 1E-31 2.2E-36 247.7 14.7 215 16-261 5-240 (258)
352 PRK11147 ABC transporter ATPas 100.0 3.3E-31 7.3E-36 303.4 21.0 208 17-261 3-242 (635)
353 cd03238 ABC_UvrA The excision 100.0 6.6E-31 1.4E-35 252.6 19.2 161 31-255 7-170 (176)
354 PLN03232 ABC transporter C fam 100.0 2.8E-31 6.1E-36 327.7 21.1 205 17-261 614-827 (1495)
355 PLN03130 ABC transporter C fam 100.0 3E-31 6.5E-36 327.8 19.2 204 17-261 614-827 (1622)
356 PRK13409 putative ATPase RIL; 100.0 4.9E-31 1.1E-35 297.9 17.1 195 16-249 71-287 (590)
357 TIGR00957 MRP_assoc_pro multi 100.0 8.8E-31 1.9E-35 323.8 20.5 210 17-261 636-849 (1522)
358 COG4133 CcmA ABC-type transpor 100.0 8.4E-31 1.8E-35 245.6 14.3 187 17-233 2-191 (209)
359 COG5265 ATM1 ABC-type transpor 100.0 2.1E-31 4.5E-36 275.6 10.4 223 15-262 260-486 (497)
360 cd00267 ABC_ATPase ABC (ATP-bi 100.0 5.4E-30 1.2E-34 242.5 18.1 153 19-250 1-157 (157)
361 COG0488 Uup ATPase components 100.0 4.4E-30 9.4E-35 283.6 17.9 207 17-259 3-237 (530)
362 TIGR01271 CFTR_protein cystic 100.0 1.4E-29 3.1E-34 312.2 23.3 196 32-261 439-635 (1490)
363 PTZ00243 ABC transporter; Prov 100.0 1.3E-29 2.9E-34 312.8 22.1 197 30-261 671-869 (1560)
364 PLN03073 ABC transporter F fam 100.0 5.4E-30 1.2E-34 294.5 14.2 219 15-260 175-429 (718)
365 COG4778 PhnL ABC-type phosphon 100.0 2.3E-29 5E-34 231.4 12.2 206 17-248 4-227 (235)
366 cd03271 ABC_UvrA_II The excisi 100.0 3.3E-28 7.2E-33 247.5 19.1 195 33-257 9-261 (261)
367 cd03270 ABC_UvrA_I The excisio 100.0 9.5E-28 2.1E-32 240.8 20.2 192 29-255 5-226 (226)
368 COG1129 MglA ABC-type sugar tr 100.0 1.3E-27 2.9E-32 257.9 19.1 211 18-257 264-485 (500)
369 KOG0054|consensus 99.9 1.3E-27 2.9E-32 282.5 15.9 215 15-261 1136-1361(1381)
370 KOG0054|consensus 99.9 4.5E-27 9.8E-32 278.1 18.1 208 14-261 515-730 (1381)
371 PF00005 ABC_tran: ABC transpo 99.9 4.5E-27 9.8E-32 216.8 12.6 133 35-200 1-137 (137)
372 COG0488 Uup ATPase components 99.9 2.1E-26 4.5E-31 254.5 19.3 205 13-261 317-524 (530)
373 cd03278 ABC_SMC_barmotin Barmo 99.9 6.6E-27 1.4E-31 229.6 12.2 166 36-248 14-190 (197)
374 COG4138 BtuD ABC-type cobalami 99.9 2.5E-27 5.4E-32 218.9 5.2 206 18-261 4-220 (248)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 4.3E-25 9.4E-30 223.8 15.5 186 30-247 13-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 6.1E-27 1.3E-31 232.4 0.1 189 17-248 5-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.1E-25 2.4E-30 229.4 8.3 178 50-247 25-242 (251)
378 COG3845 ABC-type uncharacteriz 99.9 4.3E-24 9.3E-29 226.5 17.9 219 17-259 257-489 (501)
379 COG4615 PvdE ABC-type sideroph 99.9 7.3E-25 1.6E-29 224.9 7.5 206 16-255 321-530 (546)
380 cd03240 ABC_Rad50 The catalyti 99.9 4.4E-24 9.6E-29 210.8 11.9 159 51-249 23-199 (204)
381 PRK00635 excinuclease ABC subu 99.9 3.8E-23 8.2E-28 250.9 21.6 137 113-261 759-905 (1809)
382 cd03279 ABC_sbcCD SbcCD and ot 99.9 8E-24 1.7E-28 210.5 11.1 193 17-250 5-210 (213)
383 PRK00349 uvrA excinuclease ABC 99.9 3E-22 6.5E-27 234.1 23.0 125 117-261 792-926 (943)
384 COG4178 ABC-type uncharacteriz 99.9 8.5E-23 1.8E-27 224.8 13.2 197 16-247 391-587 (604)
385 cd03276 ABC_SMC6_euk Eukaryoti 99.9 4.1E-22 8.9E-27 195.8 14.0 161 50-250 21-192 (198)
386 PF01061 ABC2_membrane: ABC-2 99.9 1.1E-23 2.3E-28 206.9 1.2 209 346-558 1-210 (210)
387 TIGR00630 uvra excinuclease AB 99.9 3.1E-21 6.8E-26 225.2 20.5 125 116-260 789-923 (924)
388 KOG0927|consensus 99.9 4.7E-22 1E-26 211.9 11.5 200 17-258 389-592 (614)
389 KOG0927|consensus 99.9 6.7E-22 1.4E-26 210.7 12.6 227 4-261 62-308 (614)
390 COG4170 SapD ABC-type antimicr 99.9 6.1E-22 1.3E-26 188.1 9.7 228 18-261 4-247 (330)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.8 3.4E-21 7.4E-26 196.0 8.3 180 51-247 23-232 (247)
392 KOG2355|consensus 99.8 3.2E-20 7E-25 176.0 13.2 211 16-262 12-237 (291)
393 COG1245 Predicted ATPase, RNas 99.8 3.7E-20 8.1E-25 193.6 14.0 179 35-247 352-530 (591)
394 KOG0062|consensus 99.8 2.6E-20 5.6E-25 197.7 9.7 199 19-260 82-283 (582)
395 KOG0062|consensus 99.8 1E-19 2.2E-24 193.2 11.9 198 16-253 361-559 (582)
396 KOG0060|consensus 99.8 6.9E-19 1.5E-23 189.1 15.8 210 14-252 430-646 (659)
397 KOG0066|consensus 99.8 3.3E-19 7.1E-24 184.9 12.5 188 17-248 586-776 (807)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.8 8.6E-19 1.9E-23 174.1 12.4 78 172-250 127-211 (213)
399 PRK00349 uvrA excinuclease ABC 99.8 1.9E-18 4.1E-23 202.4 15.3 137 113-261 433-584 (943)
400 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.3E-18 2.9E-23 171.3 10.8 80 172-255 92-172 (200)
401 TIGR00630 uvra excinuclease AB 99.8 3.3E-18 7.2E-23 200.0 15.9 136 114-261 432-582 (924)
402 COG0178 UvrA Excinuclease ATPa 99.7 2.3E-17 5.1E-22 183.3 17.9 127 116-262 783-919 (935)
403 COG1245 Predicted ATPase, RNas 99.7 4E-18 8.8E-23 178.5 8.6 169 48-247 98-287 (591)
404 cd03239 ABC_SMC_head The struc 99.7 1.6E-16 3.5E-21 153.5 14.4 74 172-248 95-172 (178)
405 cd03283 ABC_MutS-like MutS-lik 99.7 4.9E-17 1.1E-21 159.9 9.4 147 32-246 14-163 (199)
406 PRK00635 excinuclease ABC subu 99.7 2.1E-16 4.6E-21 192.7 16.4 136 114-261 424-571 (1809)
407 cd03241 ABC_RecN RecN ATPase i 99.7 1E-16 2.2E-21 165.8 11.5 76 171-250 170-249 (276)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.7 4.9E-17 1.1E-21 162.6 7.6 154 31-256 16-175 (222)
409 cd03227 ABC_Class2 ABC-type Cl 99.7 7.1E-16 1.5E-20 146.8 11.9 74 172-248 78-155 (162)
410 COG2401 ABC-type ATPase fused 99.6 2.8E-15 6E-20 155.6 12.9 185 31-252 395-588 (593)
411 KOG0064|consensus 99.6 4E-16 8.6E-21 165.8 6.0 198 13-242 477-677 (728)
412 cd03242 ABC_RecF RecF is a rec 99.6 2.9E-14 6.2E-19 147.1 15.1 74 172-251 184-269 (270)
413 cd03243 ABC_MutS_homologs The 99.6 7.4E-15 1.6E-19 144.9 10.1 84 172-259 92-176 (202)
414 KOG0063|consensus 99.5 5.6E-14 1.2E-18 146.5 12.4 184 31-247 348-531 (592)
415 KOG0066|consensus 99.5 4.2E-15 9.2E-20 154.6 3.6 210 16-257 263-494 (807)
416 TIGR01247 drrB daunorubicin re 99.5 1.7E-12 3.7E-17 131.0 22.5 227 354-612 1-234 (236)
417 cd03282 ABC_MSH4_euk MutS4 hom 99.5 5.8E-14 1.3E-18 138.5 8.6 135 31-232 15-151 (204)
418 TIGR02858 spore_III_AA stage I 99.5 1.1E-13 2.3E-18 141.8 10.2 139 51-260 112-267 (270)
419 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 3.7E-12 8E-17 126.0 17.2 152 437-619 57-208 (208)
420 cd03284 ABC_MutS1 MutS1 homolo 99.4 3.4E-13 7.4E-18 134.4 9.5 158 33-260 19-179 (216)
421 TIGR01291 nodJ ABC-2 type tran 99.4 1.3E-10 2.8E-15 118.8 25.3 236 349-618 8-251 (253)
422 TIGR00025 Mtu_efflux ABC trans 99.4 1.3E-10 2.8E-15 117.1 23.5 222 360-615 2-229 (232)
423 TIGR03861 phenyl_ABC_PedC alco 99.4 3.7E-10 8E-15 115.3 26.3 237 345-616 1-250 (253)
424 smart00534 MUTSac ATPase domai 99.4 8.4E-13 1.8E-17 128.5 6.4 80 172-254 62-142 (185)
425 TIGR00634 recN DNA repair prot 99.3 3.2E-12 6.9E-17 144.9 9.2 77 170-250 439-519 (563)
426 PRK10869 recombination and rep 99.3 6.4E-12 1.4E-16 141.5 9.9 77 170-250 429-509 (553)
427 TIGR00618 sbcc exonuclease Sbc 99.3 9E-12 1.9E-16 150.9 11.1 77 171-249 950-1036(1042)
428 COG0178 UvrA Excinuclease ATPa 99.3 5.5E-11 1.2E-15 133.2 15.3 136 114-261 426-576 (935)
429 PHA02562 46 endonuclease subun 99.3 8.6E-12 1.9E-16 141.8 8.8 77 170-251 467-555 (562)
430 TIGR01069 mutS2 MutS2 family p 99.2 1.8E-11 3.9E-16 142.4 8.0 59 172-232 386-445 (771)
431 PTZ00132 GTP-binding nuclear p 99.2 2.2E-11 4.8E-16 121.1 7.3 45 175-219 156-205 (215)
432 KOG0063|consensus 99.2 2.4E-11 5.3E-16 127.0 7.3 97 141-247 191-287 (592)
433 cd03281 ABC_MSH5_euk MutS5 hom 99.2 1.8E-10 3.9E-15 114.6 13.2 58 175-232 94-154 (213)
434 PRK15066 inner membrane transp 99.2 1.3E-08 2.9E-13 104.1 27.2 243 344-619 6-254 (257)
435 PF02463 SMC_N: RecF/RecN/SMC 99.2 1.8E-11 4E-16 122.1 4.4 72 172-247 137-212 (220)
436 PRK10246 exonuclease subunit S 99.1 4.7E-11 1E-15 144.2 6.2 75 172-248 950-1032(1047)
437 PRK03918 chromosome segregatio 99.1 1.4E-10 3E-15 138.8 9.3 75 170-247 787-867 (880)
438 PRK01156 chromosome segregatio 99.1 7.8E-10 1.7E-14 132.5 13.3 77 169-247 799-883 (895)
439 TIGR00606 rad50 rad50. This fa 99.1 3.6E-10 7.8E-15 139.8 10.5 68 172-240 1200-1277(1311)
440 PRK00409 recombination and DNA 99.0 3.6E-10 7.8E-15 131.9 8.4 79 172-254 391-470 (782)
441 PRK13695 putative NTPase; Prov 99.0 3.5E-10 7.7E-15 108.8 4.5 76 172-254 79-156 (174)
442 PRK07721 fliI flagellum-specif 99.0 3.7E-09 8E-14 115.4 12.7 172 32-259 146-340 (438)
443 cd01124 KaiC KaiC is a circadi 99.0 5E-09 1.1E-13 101.4 12.0 75 172-247 72-163 (187)
444 cd03287 ABC_MSH3_euk MutS3 hom 98.9 1.1E-08 2.3E-13 102.4 12.7 55 184-240 105-160 (222)
445 TIGR02168 SMC_prok_B chromosom 98.9 1.9E-09 4.2E-14 132.5 8.1 74 170-247 1088-1165(1179)
446 cd01128 rho_factor Transcripti 98.9 6.5E-09 1.4E-13 105.6 10.2 73 172-251 130-211 (249)
447 COG0842 ABC-type multidrug tra 98.9 2.4E-07 5.1E-12 94.7 21.7 169 424-620 116-285 (286)
448 cd00820 PEPCK_HprK Phosphoenol 98.9 3.4E-09 7.3E-14 93.0 6.0 73 32-126 2-78 (107)
449 PRK08533 flagellar accessory p 98.8 1E-08 2.2E-13 103.3 9.7 75 172-247 96-184 (230)
450 PRK00064 recF recombination pr 98.8 1E-08 2.3E-13 110.1 8.4 77 170-251 272-359 (361)
451 PRK13830 conjugal transfer pro 98.8 4.6E-08 9.9E-13 115.5 14.2 69 187-257 650-728 (818)
452 TIGR02169 SMC_prok_A chromosom 98.8 1.1E-08 2.4E-13 125.9 8.7 76 169-248 1072-1151(1164)
453 PRK02224 chromosome segregatio 98.8 1.3E-08 2.9E-13 121.8 9.0 76 170-248 780-868 (880)
454 cd03286 ABC_MSH6_euk MutS6 hom 98.7 2.1E-08 4.5E-13 100.0 7.3 55 178-232 98-153 (218)
455 TIGR02788 VirB11 P-type DNA tr 98.7 1.3E-07 2.9E-12 99.4 12.6 71 181-261 210-280 (308)
456 cd01120 RecA-like_NTPases RecA 98.7 4E-08 8.7E-13 92.0 7.2 61 172-233 68-138 (165)
457 COG3910 Predicted ATPase [Gene 98.7 4.2E-07 9.1E-12 86.4 13.7 59 172-232 130-188 (233)
458 TIGR01248 drrC daunorubicin re 98.7 4.6E-07 1E-11 85.3 13.7 131 421-554 14-146 (152)
459 PRK06793 fliI flagellum-specif 98.6 1.3E-07 2.7E-12 102.7 10.7 168 18-256 131-305 (432)
460 TIGR00611 recf recF protein. A 98.6 9.6E-08 2.1E-12 102.6 7.1 59 170-232 274-341 (365)
461 PRK14079 recF recombination pr 98.5 1.1E-07 2.5E-12 101.6 7.0 77 171-256 263-348 (349)
462 PRK06067 flagellar accessory p 98.5 1.5E-06 3.2E-11 87.7 12.9 75 172-247 101-186 (234)
463 cd01131 PilT Pilus retraction 98.5 7.2E-07 1.6E-11 87.8 10.1 57 181-247 66-122 (198)
464 cd01125 repA Hexameric Replica 98.4 7.9E-07 1.7E-11 90.1 9.6 46 186-232 108-159 (239)
465 COG0419 SbcC ATPase involved i 98.4 5.2E-07 1.1E-11 108.3 9.6 77 169-248 813-897 (908)
466 TIGR03518 ABC_perm_GldF glidin 98.4 0.00021 4.5E-09 72.5 25.6 220 349-616 2-239 (240)
467 TIGR02680 conserved hypothetic 98.3 1E-06 2.2E-11 109.2 7.5 60 169-232 1245-1316(1353)
468 COG1682 TagG ABC-type polysacc 98.3 0.00038 8.3E-09 71.4 24.4 208 344-560 16-226 (263)
469 PF13304 AAA_21: AAA domain; P 98.3 2.4E-06 5.1E-11 85.2 8.1 60 172-232 237-299 (303)
470 smart00382 AAA ATPases associa 98.2 4.1E-05 8.8E-10 68.8 14.2 59 172-230 61-124 (148)
471 TIGR02655 circ_KaiC circadian 98.2 5.5E-08 1.2E-12 108.5 -5.8 81 148-247 100-190 (484)
472 PRK06995 flhF flagellar biosyn 98.2 4.6E-06 9.9E-11 92.0 8.6 140 49-230 255-400 (484)
473 PF13558 SbcCD_C: Putative exo 98.1 7.3E-06 1.6E-10 70.1 6.6 46 171-216 32-90 (90)
474 TIGR03881 KaiC_arch_4 KaiC dom 98.1 5.2E-06 1.1E-10 83.4 6.1 42 206-247 140-188 (229)
475 PRK15176 Vi polysaccharide exp 98.1 0.0014 2.9E-08 67.5 23.8 239 345-620 18-262 (264)
476 PF12679 ABC2_membrane_2: ABC- 98.0 0.0011 2.5E-08 67.9 23.2 165 426-616 88-274 (277)
477 PF12698 ABC2_membrane_3: ABC- 98.0 1.3E-06 2.9E-11 91.3 -0.0 157 421-611 182-343 (344)
478 PRK07196 fliI flagellum-specif 98.0 8.4E-06 1.8E-10 88.8 5.9 88 32-130 143-240 (434)
479 TIGR01420 pilT_fam pilus retra 98.0 3.2E-05 7E-10 82.6 10.3 57 181-247 187-243 (343)
480 cd01130 VirB11-like_ATPase Typ 97.9 3.6E-05 7.8E-10 74.9 8.8 75 48-130 23-100 (186)
481 TIGR03238 dnd_assoc_3 dnd syst 97.9 4.8E-06 1E-10 90.6 2.3 52 32-98 19-71 (504)
482 TIGR01026 fliI_yscN ATPase Fli 97.9 6.7E-05 1.5E-09 82.3 11.0 174 32-260 151-346 (440)
483 PRK06002 fliI flagellum-specif 97.9 2.3E-05 5.1E-10 85.4 7.1 82 16-112 138-230 (450)
484 cd02023 UMPK Uridine monophosp 97.8 1.9E-05 4.1E-10 77.5 4.9 106 64-204 8-113 (198)
485 PRK05399 DNA mismatch repair p 97.7 5.9E-05 1.3E-09 89.6 8.0 68 171-242 666-738 (854)
486 PF06422 PDR_CDR: CDR ABC tran 97.7 7.7E-05 1.7E-09 65.4 6.1 47 573-619 28-75 (103)
487 PRK13898 type IV secretion sys 97.6 0.00074 1.6E-08 80.3 15.1 51 185-237 638-689 (800)
488 cd01122 GP4d_helicase GP4d_hel 97.5 0.0018 3.9E-08 66.6 14.5 55 177-231 126-190 (271)
489 TIGR00416 sms DNA repair prote 97.5 0.00022 4.7E-09 79.0 7.8 63 188-250 169-247 (454)
490 TIGR02903 spore_lon_C ATP-depe 97.5 0.00028 6.1E-09 81.1 8.4 111 51-216 176-291 (615)
491 PF09818 ABC_ATPase: Predicted 97.5 0.003 6.5E-08 68.2 15.3 79 172-251 323-416 (448)
492 PLN03210 Resistant to P. syrin 97.5 0.00042 9.1E-09 85.6 10.2 38 50-94 207-244 (1153)
493 cd01121 Sms Sms (bacterial rad 97.4 0.00059 1.3E-08 73.5 8.7 62 188-249 157-234 (372)
494 PRK00454 engB GTP-binding prot 97.4 0.0022 4.7E-08 62.2 12.0 65 143-219 126-194 (196)
495 PRK09825 idnK D-gluconate kina 97.3 0.00013 2.8E-09 70.4 2.8 65 50-126 3-70 (176)
496 PRK13764 ATPase; Provisional 97.3 0.0012 2.5E-08 75.0 10.7 64 186-258 321-401 (602)
497 PRK06315 type III secretion sy 97.3 0.00062 1.3E-08 74.5 8.2 109 32-154 152-277 (442)
498 COG1277 NosY ABC-type transpor 97.3 0.05 1.1E-06 56.0 21.5 250 347-617 3-275 (278)
499 cd01876 YihA_EngB The YihA (En 97.2 0.00039 8.4E-09 64.8 5.1 42 172-217 123-169 (170)
500 PRK13891 conjugal transfer pro 97.2 0.00071 1.5E-08 80.7 8.1 70 182-253 680-752 (852)
No 1
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.2e-105 Score=909.57 Aligned_cols=578 Identities=39% Similarity=0.705 Sum_probs=518.3
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEe
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMY 108 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~ 108 (622)
|++++|+++|+++ ++|+.++++|++ ||||||||++|+|+.+++...+|+|.+||++++. .+++.+|||+
T Consensus 36 ~~~~iL~~vs~~i-----~~Ge~~aI~G~s-----GsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~ 105 (617)
T TIGR00955 36 PRKHLLKNVSGVA-----KPGELLAVMGSS-----GAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQ 105 (617)
T ss_pred CccccccCCEEEE-----eCCeEEEEECCC-----CCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeec
Confidence 4678999999999 677778888776 8999999999999998754468999999999864 5788999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhh
Q psy2519 109 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188 (622)
Q Consensus 109 Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~ 188 (622)
|++.+++.+||+|||.|++.++.+...++++++++++++++.+||.+++|+.+|+ +..++||||||||||+||++|+.
T Consensus 106 Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~--~~~~~~LSgGqrkRvsia~aL~~ 183 (617)
T TIGR00955 106 QDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGV--PGRVKGLSGGERKRLAFASELLT 183 (617)
T ss_pred cccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCC--CCCCCCcCcchhhHHHHHHHHHc
Confidence 9999999999999999999888765556667778899999999999999999997 44467899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHHHHhCC
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQG 268 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~~~~g 268 (622)
+|++++|||||+|||+.++.++++.|+++++ .|+|||+++|||+.++.++||++++|++|++++.|+++++.+||++.|
T Consensus 184 ~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g 262 (617)
T TIGR00955 184 DPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLG 262 (617)
T ss_pred CCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcC
Confidence 9999999999999999999999999999997 699999999999778999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHhhccCCchhhhhHHHHHHHHHHhhhChhHHHHHHHhhhccccCCC--ccccccCCCCcCCChhHH
Q psy2519 269 YPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTY--DFLADFNSRKIKKPFWFT 346 (622)
Q Consensus 269 ~~~p~~~n~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 346 (622)
++||++.||+|+++++++.+++.+.+..+..+++.+.|+.++...+.....+......+. .........++..+ |++
T Consensus 263 ~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 341 (617)
T TIGR00955 263 HPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNAS-WWT 341 (617)
T ss_pred CCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCC-HHH
Confidence 999999999999999987655444444556677888888876665554433111000000 00001122345677 999
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh
Q psy2519 347 IIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLP 426 (622)
Q Consensus 347 Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~ 426 (622)
|+.+|++|++++.+|||.++..|+++.+++|+++|++|+++ ++++.++++|.|++|+++++++|.+++++++.|+.||+
T Consensus 342 q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~-~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~ 420 (617)
T TIGR00955 342 QFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQ-GLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELP 420 (617)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 89999999999999999999999998899999999999
Q ss_pred HHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy2519 427 LFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSV 506 (622)
Q Consensus 427 v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~ 506 (622)
+|.||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..+++.++|+++++++|+.
T Consensus 421 v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~ 500 (617)
T TIGR00955 421 VFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSST 500 (617)
T ss_pred HHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCC-CCCCCCccChHHHHhhc
Q psy2519 507 STAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFD-NPDLPCLEDGAQVINNM 585 (622)
Q Consensus 507 ~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~-~~~~~c~~~g~~~L~~~ 585 (622)
.+|+.+++++++++++|+||+++.++||+||+|++|+||++||+||++.|||.+..+.+|.+ +....|+.+|+++|+.+
T Consensus 501 ~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~ 580 (617)
T TIGR00955 501 SMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETL 580 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999987668976 33346999999999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy2519 586 NFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRPKS 622 (622)
Q Consensus 586 ~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~~~~ 622 (622)
|++.++.|.++++|++++++|++++|++|+++.|++|
T Consensus 581 g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 581 SFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999887
No 2
>KOG0061|consensus
Probab=100.00 E-value=9.6e-105 Score=897.65 Aligned_cols=585 Identities=33% Similarity=0.578 Sum_probs=516.7
Q ss_pred cCCcccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 15 KNNEEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
+...++++++.+.... .+++|++|+..+ ++|+-.+++|+ ||||||||||+|+|+..++...+|+|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~-----~~Gel~AimG~-----SGsGKtTLL~~Lagr~~~~~~~~G~ilv 92 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTA-----KPGELLAIMGP-----SGSGKTTLLNALAGRLNGGLKLSGEILL 92 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEE-----ecCeEEEEECC-----CCCCHHHHHHHHhccccCCCcceEEEEE
Confidence 3445556666665433 378999999999 67777777766 4899999999999999976568999999
Q ss_pred CCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 92 NGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 92 ~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
||++... .+++.+|||.|||.++|+|||+|++.|++++++++..++++++++|+++++++||.+++|+.+|+ ++. |
T Consensus 93 NG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~--~~~-r 169 (613)
T KOG0061|consen 93 NGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGN--PGI-R 169 (613)
T ss_pred CCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecC--CCC-C
Confidence 9987765 58999999999999999999999999999999988788899999999999999999999999999 455 9
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|+||||||||+||.+|++||.||+|||||+|||+.++.++++.|+++|++ |+|||+++|||+.++++++|++++|++|+
T Consensus 170 giSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~ 248 (613)
T KOG0061|consen 170 GLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGE 248 (613)
T ss_pred ccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCc
Confidence 99999999999999999999999999999999999999999999999995 99999999999999999999999999999
Q ss_pred eEEecChHHHHHHHHhCCCCCCCCCChHHHHHHhhccC-CchhhhhHHHHHHHHHHhhhChhHHHHHHHhhhccccCCCc
Q psy2519 251 TAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVT-TNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTYD 329 (622)
Q Consensus 251 iv~~G~~~~~~~~~~~~g~~~p~~~n~~d~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (622)
++|+|+++++.+||...|++||++.||+||++|+++.+ ...+.....+.....+.++..+...+..... .......+
T Consensus 249 ~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 326 (613)
T KOG0061|consen 249 VVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEAL--EKSLSTSK 326 (613)
T ss_pred EEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHH--hhhccccc
Confidence 99999999999999999999999999999999999863 3333333333344444443211111110000 00000000
Q ss_pred cccccCCCCcCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHH
Q psy2519 330 FLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTEN 409 (622)
Q Consensus 330 ~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~~~~~ 409 (622)
.......++ ||.|+++|++|.+++.+|||.+...|+++.+++|+++|++||++ ++++.++++|.|++|+++.++
T Consensus 327 ----~~~~~~~~s-~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~-~~~~~~~~~~~g~~~~~~~~~ 400 (613)
T KOG0061|consen 327 ----KVEIGTSPS-WWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNL-GNDAKGIQNRLGLFFFILSFM 400 (613)
T ss_pred ----ccccccCCc-HHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCC-CCchHHHHHHHHHHHHHHHHH
Confidence 000111566 99999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHhHHHHHhhhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHH
Q psy2519 410 TFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILII 489 (622)
Q Consensus 410 ~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~ 489 (622)
.|.+++++++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++++++..
T Consensus 401 ~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~ 480 (613)
T KOG0061|consen 401 TFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSS 480 (613)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCC
Q psy2519 490 NVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDN 569 (622)
Q Consensus 490 ~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~ 569 (622)
++++++|+++++.+||...|+.+++++.+++++|+||+++.+++|.||+|++|+||++|++|+++.|||.+ ....|...
T Consensus 481 ~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~-~~~~~~~~ 559 (613)
T KOG0061|consen 481 LVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSG-GSSRCFLS 559 (613)
T ss_pred HHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhc-cccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 33477653
Q ss_pred CCCCCccChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy2519 570 PDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRPKS 622 (622)
Q Consensus 570 ~~~~c~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~~~~ 622 (622)
....|..+|.++++..++++.+.|.|+.+++++.++|++++|++|+++.|++|
T Consensus 560 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 560 GNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 32477789999999999999999999999999999999999999999988865
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.2e-101 Score=880.74 Aligned_cols=571 Identities=26% Similarity=0.441 Sum_probs=482.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
..++|++++| +++++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+|+. .+|+|.+||+++.
T Consensus 69 ~~~~~l~~~~--~~~~iL~~vs~~i-----~~Ge~~aI~Gpn-----GaGKSTLL~iLaG~~~~~~-~sG~I~inG~~~~ 135 (659)
T PLN03211 69 PKISDETRQI--QERTILNGVTGMA-----SPGEILAVLGPS-----GSGKSTLLNALAGRIQGNN-FTGTILANNRKPT 135 (659)
T ss_pred cccccccccC--CCCeeeeCCEEEE-----ECCEEEEEECCC-----CCCHHHHHHHHhCCCCCCc-eeEEEEECCEECc
Confidence 4577888875 6778999999999 677888888776 8999999999999998742 5899999999986
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
...++++|||+|++.+++.+||+||+.|.+.++.+...++++++++++++++.+||.+++|+.+|+ ...++||||||
T Consensus 136 ~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~---~~~~~LSgGer 212 (659)
T PLN03211 136 KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN---SFIRGISGGER 212 (659)
T ss_pred hhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCC---CCCCCcChhhh
Confidence 655678999999999999999999999988776543344556667899999999999999999987 34567999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecCh
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 257 (622)
||++||++|+.+|++|+|||||+|||+.++.++++.|+++++ +|+|||+++|||+.++.++||++++|++|++++.|++
T Consensus 213 qRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~ 291 (659)
T PLN03211 213 KRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKG 291 (659)
T ss_pred hHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCH
Confidence 999999999999999999999999999999999999999997 6999999999997678999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCChHHHHHHhhccCCch----hhhhHHHHHHHHHHhhhChhHHHHHHHhhh---ccccCCC--
Q psy2519 258 DAALAFLESQGYPCPYGYNPADFLIKSLAVTTND----ELSSRRRLKRICDEFSVCDFAKEVDLEINY---QTHVGTY-- 328 (622)
Q Consensus 258 ~~~~~~~~~~g~~~p~~~n~~d~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~-- 328 (622)
+++.+||++.|++||++.||+||++++++.+... +.+.....+.+.+.|+.... .+....... .......
T Consensus 292 ~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 370 (659)
T PLN03211 292 SDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVG 370 (659)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhh
Confidence 9999999999999999999999999998643211 11112223445566643211 111111100 0000000
Q ss_pred -cc-ccc-cCCCCcCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHH
Q psy2519 329 -DF-LAD-FNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIM 405 (622)
Q Consensus 329 -~~-~~~-~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~ 405 (622)
.. ... .....+.++ |++|+.+|++|++++ +||+.+...|+++++++|+++|++||++ + +.++++|.|++||+
T Consensus 371 ~~~~~~~~~~~~~~~~s-~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~-~--~~~~~~r~g~lff~ 445 (659)
T PLN03211 371 SASTKEHRSSDRISIST-WFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHS-D--FRDVQDRLGLLFFI 445 (659)
T ss_pred cccccccccCCCccCCC-HHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcC-C--HHHHHHHHHHHHHH
Confidence 00 000 011124467 999999999999998 8999999999999999999999999998 4 67899999999999
Q ss_pred HHHHHHHhHHHHHhhhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHH
Q psy2519 406 VTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLIC 485 (622)
Q Consensus 406 ~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~ 485 (622)
++++++.+++++++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|++++
T Consensus 446 ~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~ 525 (659)
T PLN03211 446 SIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVL 525 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHH
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcc--
Q psy2519 486 ILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTN-- 563 (622)
Q Consensus 486 ~l~~~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~-- 563 (622)
++..++++++|+++++++|+..+|+.+++++++++++|+||+++ +||+||+|++|+||++||+||++.|||++...
T Consensus 526 ~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~ 603 (659)
T PLN03211 526 LGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRIS 603 (659)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999999999999999999999999999997 79999999999999999999999999986532
Q ss_pred --cccCCC---CCCCCccChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2519 564 --ITCFDN---PDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKS 618 (622)
Q Consensus 564 --~~C~~~---~~~~c~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~ 618 (622)
++|..+ ....|...++.++ ...+.|.++++|++++++|++++|++|++.+
T Consensus 604 ~~~~C~~~~~~~~~~c~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 604 SLLGCSLPHGSDRASCKFVEEDVA-----GQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred cccCCCCcccCCCCCCccchhhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368642 1134655554444 3457899999999999999999999998754
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.2e-96 Score=895.34 Aligned_cols=571 Identities=23% Similarity=0.316 Sum_probs=495.3
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-CceeeEEEECCEecCc---cccccEEE
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD-CIIDGDIRVNGKPVEG---KFRSACGF 106 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~-~~~~G~I~~~G~~~~~---~~r~~igy 106 (622)
++++|+++|+.+ ++|+.++++|+| |||||||||+|+|+.++. ...+|+|.+||+++.. ..|+.++|
T Consensus 73 ~~~iL~~vs~~i-----~~Ge~~aIlG~n-----GsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~y 142 (1394)
T TIGR00956 73 TFDILKPMDGLI-----KPGELTVVLGRP-----GSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVY 142 (1394)
T ss_pred cceeeeCCEEEE-----ECCEEEEEECCC-----CCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEE
Confidence 467999999999 677788888776 899999999999997421 1269999999998753 35677999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHcCCCc----cccHHHHHHH-HHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHH
Q psy2519 107 MYQHDLFSPSLTVYEHLYFMALLKLDR----RVKAYQRIAL-INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLS 181 (622)
Q Consensus 107 V~Q~~~l~~~lTV~E~l~f~~~l~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvs 181 (622)
|+|++.++|.+||+||+.|+++++.+. ..++++..++ ++++++.+||.+++|+++|+ ..++||||||||||+
T Consensus 143 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~---~~~~~LSGGerkRvs 219 (1394)
T TIGR00956 143 NAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGN---DFVRGVSGGERKRVS 219 (1394)
T ss_pred eccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCC---CcCCCCCcccchHHH
Confidence 999999999999999999998876432 1233443333 56789999999999999998 456789999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 182 FATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 182 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|||+++|||++++.++||++++|++|+++++|+++++.
T Consensus 220 IA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 220 IAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred HHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999997569999999999888999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCChHHHHHHhhccCC-----chhhhhHHHHHHHHHHhhhChhHHHHHHHhhhc--cccC--------
Q psy2519 262 AFLESQGYPCPYGYNPADFLIKSLAVTT-----NDELSSRRRLKRICDEFSVCDFAKEVDLEINYQ--THVG-------- 326 (622)
Q Consensus 262 ~~~~~~g~~~p~~~n~~d~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~-------- 326 (622)
+||+++|++||++.||+||++++.+.+. +.|...+...+++++.|++|+..+++.++++.. ....
T Consensus 300 ~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1394)
T TIGR00956 300 QYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYR 379 (1394)
T ss_pred HHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHH
Confidence 9999999999999999999999875321 112222345678899999988766555443210 0000
Q ss_pred ---CC-ccccccCCCCcCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q psy2519 327 ---TY-DFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGAL 402 (622)
Q Consensus 327 ---~~-~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~l 402 (622)
.. ........+++..| +++|+++|++|++++.+|||.+++.|+++.+++|+++|++||++ +++++++++|.|++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~s-~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~-~~~~~~~~~r~g~l 457 (1394)
T TIGR00956 380 ESHVAKQSKRTRPSSPYTVS-FSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNL-PKNTSDFYSRGGAL 457 (1394)
T ss_pred HHHHhhhcccccCCCCCcCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHH
Confidence 00 00011123457788 99999999999999999999999999999999999999999999 88999999999999
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHH
Q psy2519 403 FIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAV 482 (622)
Q Consensus 403 f~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~ 482 (622)
||++++.+|+++.+ +..+..||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+
T Consensus 458 f~~~~~~~~~~~~~-i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~ 536 (1394)
T TIGR00956 458 FFAILFNAFSSLLE-IASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYL 536 (1394)
T ss_pred HHHHHHHHHHHHHH-HHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHH
Confidence 99999999999755 55566799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCc
Q psy2519 483 LICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562 (622)
Q Consensus 483 ~~~~l~~~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~ 562 (622)
++++++.+++.+++.++++++|+..+|+.+++++++++++|+||+++.++||+||+|++|+||++|||||++.|||++.+
T Consensus 537 l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~ 616 (1394)
T TIGR00956 537 LILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRR 616 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccCC---------C---CCCCC----------ccChHHHHh-hcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2519 563 NITCFD---------N---PDLPC----------LEDGAQVIN-NMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKS 618 (622)
Q Consensus 563 ~~~C~~---------~---~~~~c----------~~~g~~~L~-~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~ 618 (622)
+ +|.. + ....| ..+|+++|+ .++++++++|+|+++|++++++|++++++++.+.+
T Consensus 617 ~-~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 617 F-ECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred c-cccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4 8952 0 11246 348999998 68999999999999999999999999999998765
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.7e-96 Score=890.54 Aligned_cols=580 Identities=22% Similarity=0.336 Sum_probs=499.5
Q ss_pred cccCCccccccc--cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIV--GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~--g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++||++++.. +++++|+++|+++ ++|+.+.|+|+| |||||||||+|+|+.+++...+|+|.+||++
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i-----~~Ge~~aI~G~s-----GaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~ 829 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWV-----KPGTLTALMGAS-----GAGKTTLLNVLAERVTTGVITGGDRLVNGRP 829 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEE-----ECCEEEEEECCC-----CCCHHHHHHHHhCCCCCCCcceeEEEECCEE
Confidence 468999998742 3568999999999 677788888776 8999999999999998543357999999999
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
+...+|+.+|||+|++.+++.+||+||+.|++.++.+...+++++.++++++++.+||.+++|+.+++ ++ ++||||
T Consensus 830 ~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~--~~--~~LSgG 905 (1394)
T TIGR00956 830 LDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV--PG--EGLNVE 905 (1394)
T ss_pred CChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCC--CC--CCCCHH
Confidence 87667889999999999999999999999998887654445566778899999999999999999986 22 269999
Q ss_pred HHHHHHHHHHHhhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC-ceEE
Q psy2519 176 ERKRLSFATELLTDPA-LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS-RTAF 253 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~-lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G-~iv~ 253 (622)
|||||+||+||+.+|+ +|||||||+|||+.++.++++.|+++++ +|+|||+++|||+..+++.||++++|++| ++++
T Consensus 906 qrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 906 QRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY 984 (1394)
T ss_pred HhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence 9999999999999997 9999999999999999999999999987 69999999999976677899999999987 9999
Q ss_pred ecCh----HHHHHHHHhCCC-CCCCCCChHHHHHHhhccCCchhhhhHHHHHHHHHHhhhChhHHHHHHHhhhc-cccCC
Q psy2519 254 IGSK----DAALAFLESQGY-PCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQ-THVGT 327 (622)
Q Consensus 254 ~G~~----~~~~~~~~~~g~-~~p~~~n~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 327 (622)
.|++ +++.+||++.|+ +||++.|||||++|+++...+.+ ..+.+.+.|+.++..++...+++.. .....
T Consensus 985 ~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1059 (1394)
T TIGR00956 985 FGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH-----ANQDYHEVWRNSSEYQAVKNELDRLEAELSK 1059 (1394)
T ss_pred ECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc-----hhccHHHHHhcCHHHHHHHHHHHHhhccccc
Confidence 9997 568899999996 99999999999999986543221 1235777888776655544332111 11010
Q ss_pred C-ccccccCCCCcCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHH
Q psy2519 328 Y-DFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMV 406 (622)
Q Consensus 328 ~-~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~~ 406 (622)
. .........++++| |++|+++|++|++++.||||.++..|+++.+++|+++|++||++ ++++.++++|.|++|+++
T Consensus 1060 ~~~~~~~~~~~~~~~s-~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~-~~~~~~i~~~~g~~f~~~ 1137 (1394)
T TIGR00956 1060 AEDDNDPDALSKYAAS-LWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKV-GTSLQGLQNQMFAVFMAT 1137 (1394)
T ss_pred CccccccccccccCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHH
Confidence 1 00011122457888 99999999999999999999999999999999999999999999 899999999999999988
Q ss_pred HHHHHHhHHHHHhhhhhhhhHH-HHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHH-------H
Q psy2519 407 TENTFSPMYSVLSQFPDMLPLF-HREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSV-------F 478 (622)
Q Consensus 407 ~~~~~~~~~~~~~~f~~er~v~-~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~-------f 478 (622)
++..+. +..+++.|+.||.++ +||+.+|+|++.+|++|++++|+|+.++.+++|.+|+|||+||++++.. |
T Consensus 1138 ~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f 1216 (1394)
T TIGR00956 1138 VLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERG 1216 (1394)
T ss_pred HHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchH
Confidence 877665 346788888888886 8999999999999999999999999999999999999999999988765 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHh
Q psy2519 479 LMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQW 558 (622)
Q Consensus 479 ~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef 558 (622)
++|++++++..+++.++|+++++++|+..+|+.++++++.++++|+||+++.++||.||+|++|+||++|++++++.|||
T Consensus 1217 ~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~ 1296 (1394)
T TIGR00956 1217 VLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGL 1296 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCC------------------------------C--C---CCCcc-ChHHHHhhcCCCCCCchhhHHHHHHH
Q psy2519 559 QGVTNITCFDN------------------------------P--D---LPCLE-DGAQVINNMNFSPDNLYPNLIAMVVL 602 (622)
Q Consensus 559 ~~~~~~~C~~~------------------------------~--~---~~c~~-~g~~~L~~~~~~~~~~~~~~~il~~~ 602 (622)
++.+ ++|.++ + . .+|+. +|+++|+.++++.++.|+|+++++++
T Consensus 1297 ~~~~-~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~ 1375 (1394)
T TIGR00956 1297 ADVP-VTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAF 1375 (1394)
T ss_pred CCCe-eecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHH
Confidence 9875 366531 0 1 24554 99999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhcccCC
Q psy2519 603 YFAFHTLAFLFLLMKSRPKS 622 (622)
Q Consensus 603 ~~~f~~l~~~~L~~~~~~~~ 622 (622)
++++ ++++++|+|+.|.+|
T Consensus 1376 ~~~~-~~~~~~l~~~~r~~k 1394 (1394)
T TIGR00956 1376 IFFN-IIATVFFYWLARVPK 1394 (1394)
T ss_pred HHHH-HHHHHhhheEEEcCC
Confidence 8888 888899988776554
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.5e-95 Score=885.20 Aligned_cols=580 Identities=20% Similarity=0.334 Sum_probs=500.3
Q ss_pred cccCCccccccc-----------cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee
Q psy2519 18 EEVPNVDFSEIV-----------GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID 86 (622)
Q Consensus 18 ~~~~~~~~~~~~-----------g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~ 86 (622)
+..+||++++.. ++.++|+++|+.+ ++|+.++++|+| |||||||||+|+|+.+++ ..+
T Consensus 868 ~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i-----~~Gel~aL~G~s-----GaGKTTLL~~LaG~~~~g-~~~ 936 (1470)
T PLN03140 868 MSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAF-----RPGVLTALMGVS-----GAGKTTLMDVLAGRKTGG-YIE 936 (1470)
T ss_pred EEEEEEEEEEccCccccccccCcCCceEeeCcEEEE-----ECCeEEEEECCC-----CCCHHHHHHHHcCCCCCC-ccc
Confidence 456778777532 3457999999999 677788888776 899999999999998753 368
Q ss_pred eEEEECCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcC
Q psy2519 87 GDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 165 (622)
Q Consensus 87 G~I~~~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~ 165 (622)
|+|.+||++... .+++.+|||+|++.++|.+||+|||.|++.++.+...+++++.++++++++.+||.+++|+.+|.
T Consensus 937 G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~-- 1014 (1470)
T PLN03140 937 GDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL-- 1014 (1470)
T ss_pred ceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCC--
Confidence 999999998764 46778999999999999999999999998777654445566677899999999999999999987
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
| .++||||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|||+++|||+.++++.||++++
T Consensus 1015 ~-~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vll 1092 (1470)
T PLN03140 1015 P-GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLL 1092 (1470)
T ss_pred C-CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEE
Confidence 3 3467999999999999999999999999999999999999999999999997 6999999999997678899999999
Q ss_pred ecC-CceEEecCh----HHHHHHHHhC-CCC-CCCCCChHHHHHHhhccCCchhhhhHHHHHHHHHHhhhChhHHHHHHH
Q psy2519 246 LAD-SRTAFIGSK----DAALAFLESQ-GYP-CPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLE 318 (622)
Q Consensus 246 L~~-G~iv~~G~~----~~~~~~~~~~-g~~-~p~~~n~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (622)
|++ |+++++|++ +++.+||+++ |.+ ||+..|||||++++++..... ....++++.|+.|+.+++....
T Consensus 1093 L~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~-----~~~~d~~~~~~~s~~~~~~~~~ 1167 (1470)
T PLN03140 1093 MKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV-----KLGIDFAEHYKSSSLYQRNKAL 1167 (1470)
T ss_pred EcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc-----cccchHHHHHhccHHHHHHHHH
Confidence 996 899999996 5789999997 664 999999999999997643211 1123688899988877665443
Q ss_pred hhhccccCCCccccccCCCCcCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCCh---hhH
Q psy2519 319 INYQTHVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQ---RGV 395 (622)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~---~~~ 395 (622)
...... ............++++| +++|+.+|++|+++++||||.+++.|+++.+++|+++|++||++ ++++ .++
T Consensus 1168 ~~~~~~-~~~~~~~~~~~~~~~~s-~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~-~~~~~~~~~~ 1244 (1470)
T PLN03140 1168 VKELST-PPPGASDLYFATQYSQS-TWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKV-GTKRSNANDL 1244 (1470)
T ss_pred HHHhcc-CCCCccccccCccccCC-HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCC-CCCcchhhhH
Confidence 311000 00000011123457788 99999999999999999999999999999999999999999999 6654 577
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccH
Q psy2519 396 QSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSL 475 (622)
Q Consensus 396 ~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~ 475 (622)
+++.|++|+++++.++..+.++++.|..||++|+||+++|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++
T Consensus 1245 ~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~ 1324 (1470)
T PLN03140 1245 TMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTA 1324 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccH
Confidence 88999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHH
Q psy2519 476 SVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTI 555 (622)
Q Consensus 476 ~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~ 555 (622)
..||+|++++++..+++.++|+++++++|+.++|+.++++++.++++|+||+++.++||.||+|++|+||++|++++++.
T Consensus 1325 ~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~ 1404 (1470)
T PLN03140 1325 AKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIV 1404 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcccccCCCCCCCCccChHHH-HhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy2519 556 TQWQGVTNITCFDNPDLPCLEDGAQV-INNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRPKS 622 (622)
Q Consensus 556 nef~~~~~~~C~~~~~~~c~~~g~~~-L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~~~~ 622 (622)
|||++.+. +|..++. ....+++++ ++.+|++.+++|++++++++|+++|++++++++++.+..||
T Consensus 1405 ~~f~~~~~-~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1405 SQYGDVED-TIKVPGG-APDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHhCCCCC-cccCCCC-CCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99998764 4432110 011256666 57899999999999999999999999999999999888887
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.2e-94 Score=873.49 Aligned_cols=569 Identities=20% Similarity=0.308 Sum_probs=487.6
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEec
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQ 109 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q 109 (622)
++++|+++|+.+ ++|+.++++|+| |||||||||+|+|+++|+...+|+|.+||++++. ..++.+|||+|
T Consensus 177 ~~~IL~~vs~~i-----~~Ge~~~llGpn-----GSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q 246 (1470)
T PLN03140 177 KLTILKDASGII-----KPSRMTLLLGPP-----SSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQ 246 (1470)
T ss_pred cceeccCCeEEE-----eCCeEEEEEcCC-----CCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecc
Confidence 467999999999 678888888776 8999999999999998854469999999999865 34778999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCc-------cccHHHH------------------------HHHHHHHHHHhCCCcccC
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKLDR-------RVKAYQR------------------------IALINSLLIELGLMNSQH 158 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~ 158 (622)
+|.++|.+||+||+.|+++++... ..+++++ ...++++++.+||++++|
T Consensus 247 ~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~ 326 (1470)
T PLN03140 247 NDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKD 326 (1470)
T ss_pred cccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccC
Confidence 999999999999999998765321 0111111 123678999999999999
Q ss_pred CccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh
Q psy2519 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238 (622)
Q Consensus 159 ~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~ 238 (622)
+.+|+ ..++||||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|+|+++|||.+++++
T Consensus 327 t~vg~---~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~ 403 (1470)
T PLN03140 327 TIVGD---EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFD 403 (1470)
T ss_pred ceeCC---ccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHH
Confidence 99998 556889999999999999999999999999999999999999999999999876699999999999889999
Q ss_pred hccceeeecCCceEEecChHHHHHHHHhCCCCCCCCCChHHHHHHhhccCCchhh---h-h---HHHHHHHHHHhhhChh
Q psy2519 239 MFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDEL---S-S---RRRLKRICDEFSVCDF 311 (622)
Q Consensus 239 ~~D~v~~L~~G~iv~~G~~~~~~~~~~~~g~~~p~~~n~~d~~~~~~~~~~~~~~---~-~---~~~~~~l~~~~~~~~~ 311 (622)
+||+|++|++|+++|+|+++++.+||+++|++||+..||+||++++.+....... . . ....+++++.|+.++.
T Consensus 404 lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~ 483 (1470)
T PLN03140 404 LFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHV 483 (1470)
T ss_pred HhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHH
Confidence 9999999999999999999999999999999999999999999998764211010 0 0 1246788999998877
Q ss_pred HHHHHHHhhhccccCCCccccccCCCCcCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy2519 312 AKEVDLEINYQTHVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLT 391 (622)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~ 391 (622)
..++..+++.......... .....+++..+ ++.|++.+++|+++..+||+..+..|+++.+++|+++|++||++ +.+
T Consensus 484 ~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~s-~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~-~~~ 560 (1470)
T PLN03140 484 GMQLENELSVPFDKSQSHK-AALVFSKYSVP-KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRT-EMH 560 (1470)
T ss_pred HHHHHHHHhhhhhhhhccc-ccccCCCCcCC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 6665554321100000000 11123457888 99999999999999999999999999999999999999999999 543
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy2519 392 ---QRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWI 468 (622)
Q Consensus 392 ---~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~ 468 (622)
..+.+.+.|++||++++.+|.++ ..++.+..||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||
T Consensus 561 ~~~~~~~~~~~g~lff~~l~~~~~~~-~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m 639 (1470)
T PLN03140 561 TRNEEDGALYIGALLFSMIINMFNGF-AELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYS 639 (1470)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 23457788999999999888876 56788889999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHH
Q psy2519 469 SGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEY 548 (622)
Q Consensus 469 ~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Y 548 (622)
+||++++++||+|+++++++++++.+++.++++++++..+|+.+++++++++++|+||+++.++||+||+|++|+||++|
T Consensus 640 ~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Y 719 (1470)
T PLN03140 640 IGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSY 719 (1470)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcccccCCCCCCCCccChHHHHhhcCCCCCC--chhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2519 549 SNEALTITQWQGVTNITCFDNPDLPCLEDGAQVINNMNFSPDN--LYPNLIAMVVLYFAFHTLAFLFLLMKS 618 (622)
Q Consensus 549 a~eal~~nef~~~~~~~C~~~~~~~c~~~g~~~L~~~~~~~~~--~~~~~~il~~~~~~f~~l~~~~L~~~~ 618 (622)
|+||++.|||.+.....|...+ .+...|+++|+.+|+.+++ .|+++++|++++++|+++++++|++.+
T Consensus 720 a~eal~~NEf~~~~~~~~~~~~--~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 720 GFNALAVNEMFAPRWMNKMASD--NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HHHHHHHHhccCccccCcccCC--CCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999875432221111 2345999999999998654 489999999999999999999999765
No 8
>KOG0065|consensus
Probab=100.00 E-value=1.6e-89 Score=785.59 Aligned_cols=565 Identities=24% Similarity=0.350 Sum_probs=481.6
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEe
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMY 108 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~ 108 (622)
+++++|++|+=-+ ++|.-+++.|. ||||||||||+|+||...+. ++|+|++||.|.++ .++|.+|||.
T Consensus 802 ~~~qLL~~V~G~~-----kPG~LTALMG~-----SGAGKTTLLdvLA~R~t~G~-I~Gdi~i~G~p~~q~tF~R~~GYvq 870 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAF-----KPGVLTALMGE-----SGAGKTTLLDVLAGRKTGGY-IEGDILISGFPKDQETFARVSGYVE 870 (1391)
T ss_pred cceEhhhcCceEe-----cCCceeehhcC-----CCCchHHHHHHHhcCcccce-EEeEEEECCeeCchhhhccccceee
Confidence 3456666666555 44445555544 59999999999999987654 89999999999984 6999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhh
Q psy2519 109 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188 (622)
Q Consensus 109 Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~ 188 (622)
|+|.+.|.+||+|.|.|+|.+|++..++.+++.+.|+++++.++|++++|..||. |+ +|||..||||++||.+|+.
T Consensus 871 Q~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~--~G--~GLs~eQRKrLTIgVELvA 946 (1391)
T KOG0065|consen 871 QQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGL--PG--SGLSTEQRKRLTIGVELVA 946 (1391)
T ss_pred cccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccC--CC--CCCCHHHhceeeEEEEEec
Confidence 9999999999999999999999998899898889999999999999999999999 66 7999999999999999999
Q ss_pred CC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec-CCceEEecChHH----HHH
Q psy2519 189 DP-ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DSRTAFIGSKDA----ALA 262 (622)
Q Consensus 189 ~P-~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~-~G~iv~~G~~~~----~~~ 262 (622)
+| .||+|||||||||+.++..|++.+|++++ .|+||+|++|||+.++++.||++++|+ .|++||.|+..+ +++
T Consensus 947 ~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~ 1025 (1391)
T KOG0065|consen 947 NPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIE 1025 (1391)
T ss_pred CCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHH
Confidence 99 89999999999999999999999999998 899999999999999999999999997 689999999764 668
Q ss_pred HHHhCC-CCCCCCCChHHHHHHhhccCCchhhhhHHHHHHHHHHhhhChhHHHHHHHhhh-ccccCCCccccccCCCCcC
Q psy2519 263 FLESQG-YPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINY-QTHVGTYDFLADFNSRKIK 340 (622)
Q Consensus 263 ~~~~~g-~~~p~~~n~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 340 (622)
||+++| .+||...|||||++|++....+.+. -.++++.|+.|+.++.+.++++. +...+. .........+++
T Consensus 1026 YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~-----~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~-~~~~~~~~~~fa 1099 (1391)
T KOG0065|consen 1026 YFESIGGVKCISDENPAEWMLEVIGAGAEASL-----SVDFAEIWKNSEEYKRNKELVKELSQPPPG-FSTDLEFKTRFA 1099 (1391)
T ss_pred HHHhcCCccCCCCCChHHHHHhhccccccccc-----CccHHHHHhccHHHHHHHHHHHHHhcCCcc-CCcccccccccc
Confidence 999875 8999999999999999875443322 23789999999988877666531 111111 111233445688
Q ss_pred CChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy2519 341 KPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQ 420 (622)
Q Consensus 341 ~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~ 420 (622)
+| +|.|++.+++|++..+||+|.++..|++..++.|+++|+.||+. ++..+++||.+|++|+.+++..-.......+.
T Consensus 1100 ~s-~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~-g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~ 1177 (1391)
T KOG0065|consen 1100 QS-LWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKV-GHNVQGLQNAMGAAYMATVFSGPNNNQLQQPA 1177 (1391)
T ss_pred hh-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeec-CCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Confidence 89 99999999999999999999999999999999999999999999 89999999999999999887665544345566
Q ss_pred hhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 421 FPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFS 500 (622)
Q Consensus 421 f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~ 500 (622)
+..||.+++||+++|+||+.+|++|++++|+|+.++++.+|.+|+|+++|++.++.+|++|++..+++.++...+|+++.
T Consensus 1178 v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~ 1257 (1391)
T KOG0065|consen 1178 VATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLV 1257 (1391)
T ss_pred HhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCC----CCCCcc
Q psy2519 501 LAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNP----DLPCLE 576 (622)
Q Consensus 501 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~----~~~c~~ 576 (622)
+++||.+.|..+.++++..+.+|+||+++++.||.||+|++|+||+.|-.++++..++++.+ .+|...+ +++|..
T Consensus 1258 s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~-v~c~~~e~~~~~pp~g~ 1336 (1391)
T KOG0065|consen 1258 SLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVE-VTCEDSEMNYFDPPSGQ 1336 (1391)
T ss_pred HhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCc-eeeecCCccccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999876 4786411 113332
Q ss_pred -ChHHHHhhcC----CCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2519 577 -DGAQVINNMN----FSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619 (622)
Q Consensus 577 -~g~~~L~~~~----~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~ 619 (622)
.|+.+...+| +..+.......+.+.+.+++..++.+.+++.++
T Consensus 1337 tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~ 1384 (1391)
T KOG0065|consen 1337 TCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNF 1384 (1391)
T ss_pred CHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHH
Confidence 2444444566 444333333444555666666666666665443
No 9
>KOG0065|consensus
Probab=100.00 E-value=3.6e-84 Score=741.58 Aligned_cols=569 Identities=24% Similarity=0.364 Sum_probs=496.5
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEecC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQH 110 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q~ 110 (622)
.+++++++..+ ++|+.+.++|++ ||||||||++|+|.+.......|+|.+||.+.+. ..++.++|..|+
T Consensus 128 ~~il~~~sg~~-----~pg~m~lvLG~p-----gsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~ 197 (1391)
T KOG0065|consen 128 IQILKDISGII-----KPGEMTLVLGPP-----GSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQ 197 (1391)
T ss_pred ceeecCcceeE-----cCCceEEEecCC-----CCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccc
Confidence 46889998888 677777777665 8999999999999988755557899999999876 247889999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCcc----ccHHHHH-HHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 111 DLFSPSLTVYEHLYFMALLKLDRR----VKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 111 ~~l~~~lTV~E~l~f~~~l~~~~~----~~~~~~~-~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
|.++|.|||+|+|.|+++++.+.. .++.++. +..+.+++.+||++++|+.+|+ ..+||+||||||||++|.+
T Consensus 198 DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGn---d~~RGvSGGerKRvsi~E~ 274 (1391)
T KOG0065|consen 198 DVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGN---DMVRGVSGGERKRVSIGEM 274 (1391)
T ss_pred ccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecc---cccccccCcccceeeeeee
Confidence 999999999999999999987621 2223222 2678999999999999999999 7789999999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHHHH
Q psy2519 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 265 (622)
Q Consensus 186 L~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~~ 265 (622)
++.+|+++++||+|.|||+.++.++++.|+++++..+.|++++.|||+++++++||+|++|.+|+++|+||.+++++||+
T Consensus 275 ~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe 354 (1391)
T KOG0065|consen 275 LVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFE 354 (1391)
T ss_pred eecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCChHHHHHHhhccCCc----hh---hhhHHHHHHHHHHhhhChhHHHHHHHhhhccccCCCccccccCCCC
Q psy2519 266 SQGYPCPYGYNPADFLIKSLAVTTN----DE---LSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTYDFLADFNSRK 338 (622)
Q Consensus 266 ~~g~~~p~~~n~~d~~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (622)
+.|+.||+..++|||+.++.+.... .+ ........++.+.|..++.+.++..+++..-...+ ..+.....++
T Consensus 355 ~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k-~~~~al~s~~ 433 (1391)
T KOG0065|consen 355 DMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSK-KHKAALVSSK 433 (1391)
T ss_pred hcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhh-ccchhhcCCc
Confidence 9999999999999999999872110 00 11122346888899999888877776532111111 1112346678
Q ss_pred cCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHHHHHHHHHHhHHHH
Q psy2519 339 IKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSID-LTQRGVQSVQGALFIMVTENTFSPMYSV 417 (622)
Q Consensus 339 ~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~-~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 417 (622)
+..| +|.|++.+++|.+....||..++..++++.+++|+++|++|++. + .+..+.+.|.|++||.+++.+|.++.+.
T Consensus 434 y~v~-~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~-~~~t~~~~~~~~~~lffsll~~~f~~laEi 511 (1391)
T KOG0065|consen 434 YSVP-YWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRT-PMSTTSGGYSRGGALFFALLFNLFNGLAEI 511 (1391)
T ss_pred eecc-HHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeec-cCcccccchhhhhHHHHHHHHHHHHhHHHH
Confidence 8999 99999999999999999999999999999999999999999999 6 6777889999999999999999998665
Q ss_pred HhhhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 418 LSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGI 497 (622)
Q Consensus 418 ~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~ 497 (622)
-..| +.||||+|+|...+|++++|.++.++.++|+.++.+++|.+|+||++||.+++++||.++++++++++++.++..
T Consensus 512 ~~~~-~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr 590 (1391)
T KOG0065|consen 512 ALTF-QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFR 590 (1391)
T ss_pred HHHH-hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCC------C--
Q psy2519 498 MFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFD------N-- 569 (622)
Q Consensus 498 ~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~------~-- 569 (622)
++++++++...|+.++++.++.+.+++||+++.++||+||+|++|+||+.||+|+++.|||.+... .|.. |
T Consensus 591 ~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~-~c~p~gp~y~n~~ 669 (1391)
T KOG0065|consen 591 FIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRW-PCSPSGPAYDNIS 669 (1391)
T ss_pred HHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccC-CCCCCCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999864 8972 1
Q ss_pred -CCCCCcc----------ChHHHHh-hcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2519 570 -PDLPCLE----------DGAQVIN-NMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKS 618 (622)
Q Consensus 570 -~~~~c~~----------~g~~~L~-~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~ 618 (622)
.+..|.. .|.++++ .+++.+.+.|++++|++++.++|.++..+++.+.+
T Consensus 670 ~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 670 IENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 1135632 4555553 46666899999999999999999999999987654
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-55 Score=415.26 Aligned_cols=218 Identities=24% Similarity=0.345 Sum_probs=199.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|+| |+.++|+++|+++ ++|+.++|+|| ||||||||||+|.|+.+| .+|+|.++|+++
T Consensus 2 mi~i~~l~K~f--g~~~VLkgi~l~v-----~~Gevv~iiGp-----SGSGKSTlLRclN~LE~~---~~G~I~i~g~~~ 66 (240)
T COG1126 2 MIEIKNLSKSF--GDKEVLKGISLSV-----EKGEVVVIIGP-----SGSGKSTLLRCLNGLEEP---DSGSITVDGEDV 66 (240)
T ss_pred eEEEEeeeEEe--CCeEEecCcceeE-----cCCCEEEEECC-----CCCCHHHHHHHHHCCcCC---CCceEEECCEec
Confidence 57899999995 9999999999999 67788888866 489999999999999999 599999999877
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. .+|+++|+|||+.+|||++||.||+..+...-. +.++++.++++.++|+++||.+.+|.++..
T Consensus 67 ~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~--~~~k~eA~~~A~~lL~~VGL~~ka~~yP~q-------- 136 (240)
T COG1126 67 GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK--KLSKAEAREKALELLEKVGLADKADAYPAQ-------- 136 (240)
T ss_pred cchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHc--CCCHHHHHHHHHHHHHHcCchhhhhhCccc--------
Confidence 43 479999999999999999999999999865432 356788889999999999999999999555
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||+|||||+.+|+++|+|||||+|||....++++.+++||+ +|+|.|+|||++ ..+.+.+|||++|++|++
T Consensus 137 LSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM-~FAr~VadrviFmd~G~i 214 (240)
T COG1126 137 LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEM-GFAREVADRVIFMDQGKI 214 (240)
T ss_pred cCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechh-HHHHHhhheEEEeeCCEE
Confidence 999999999999999999999999999999999999999999999998 799999999996 688999999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
+..|+|++++
T Consensus 215 ie~g~p~~~f 224 (240)
T COG1126 215 IEEGPPEEFF 224 (240)
T ss_pred EEecCHHHHh
Confidence 9999998764
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-51 Score=396.46 Aligned_cols=218 Identities=23% Similarity=0.312 Sum_probs=199.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||||.| +...+++++||++ .+|+-++++|+ |||||||+||+|.++.+| ++|+|++||+++
T Consensus 1 MI~~~nvsk~y--~~~~av~~v~l~I-----~~gef~vliGp-----SGsGKTTtLkMINrLiep---t~G~I~i~g~~i 65 (309)
T COG1125 1 MIEFENVSKRY--GNKKAVDDVNLTI-----EEGEFLVLIGP-----SGSGKTTTLKMINRLIEP---TSGEILIDGEDI 65 (309)
T ss_pred Cceeeeeehhc--CCceeeeeeeEEe-----cCCeEEEEECC-----CCCcHHHHHHHHhcccCC---CCceEEECCeec
Confidence 57899999996 7888999999999 55666666655 599999999999999999 599999999999
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc--ccCCccCCcCCCCcc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN--SQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~~~~~~~~ 170 (622)
.. ++|++||||-|+-.|||++||.||+++...+.. .++++.+++++++++.+||+. +++++ |++
T Consensus 66 ~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~---w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~e-- 135 (309)
T COG1125 66 SDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLG---WDKERIKKRADELLDLVGLDPSEYADRY-----PHE-- 135 (309)
T ss_pred ccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcC---CCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chh--
Confidence 76 589999999999999999999999999988764 466778899999999999964 77888 555
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||.+||||+.+|++||+|||+++|||.++.++.+.++++.++.|+|||+||||. +|+.+++|||++|++|+
T Consensus 136 -LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~ 213 (309)
T COG1125 136 -LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGE 213 (309)
T ss_pred -cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCe
Confidence 9999999999999999999999999999999999999999999999998899999999996 79999999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++..++|++++
T Consensus 214 i~Q~~~P~~il 224 (309)
T COG1125 214 IVQYDTPDEIL 224 (309)
T ss_pred EEEeCCHHHHH
Confidence 99999999887
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-51 Score=408.61 Aligned_cols=220 Identities=23% Similarity=0.323 Sum_probs=202.5
Q ss_pred CcccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
++++++|+|.|..+ ...++++|||++ .+|+.+.++|.+ |||||||+|++.++.+| ++|+|.++|
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I-----~~GeI~GIIG~S-----GAGKSTLiR~iN~Le~P---tsG~v~v~G 67 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEI-----PKGEIFGIIGYS-----GAGKSTLLRLINLLERP---TSGSVFVDG 67 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEE-----cCCcEEEEEcCC-----CCcHHHHHHHHhccCCC---CCceEEEcC
Confidence 57899999998542 368999999999 678888888774 89999999999999999 599999999
Q ss_pred EecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 94 KPVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 94 ~~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
+++.. ..|++||++||+++|+...||.||++|+.++.. .+++++++||.++++.+||++.+++++.+
T Consensus 68 ~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP~q--- 141 (339)
T COG1135 68 QDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYPAQ--- 141 (339)
T ss_pred EecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCchh---
Confidence 98864 378999999999999999999999999988865 56788999999999999999999999555
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+|||||+.+|++||+|||||+|||.++..|+++|++++++.|.||+++||++ +.+.++||||.+|
T Consensus 142 -----LSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm 215 (339)
T COG1135 142 -----LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVL 215 (339)
T ss_pred -----cCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEe
Confidence 9999999999999999999999999999999999999999999999998999999999996 7999999999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|+..+++
T Consensus 216 ~~G~lvE~G~v~~vF 230 (339)
T COG1135 216 DQGRLVEEGTVSEVF 230 (339)
T ss_pred eCCEEEEeccHHHhh
Confidence 999999999999875
No 13
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.5e-50 Score=387.53 Aligned_cols=221 Identities=29% Similarity=0.394 Sum_probs=201.8
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...+++++|+++ +|++.+++++||+| .+|+.+.++||+ |+|||||||+|.|+++| .+|+|.++|+
T Consensus 6 ~~~I~vr~v~~~--fG~~~Ild~v~l~V-----~~Gei~~iiGgS-----GsGKStlLr~I~Gll~P---~~GeI~i~G~ 70 (263)
T COG1127 6 EPLIEVRGVTKS--FGDRVILDGVDLDV-----PRGEILAILGGS-----GSGKSTLLRLILGLLRP---DKGEILIDGE 70 (263)
T ss_pred cceEEEeeeeee--cCCEEEecCceeee-----cCCcEEEEECCC-----CcCHHHHHHHHhccCCC---CCCeEEEcCc
Confidence 346789999998 49999999999999 678888888774 89999999999999999 5999999999
Q ss_pred ecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCC
Q psy2519 95 PVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~ 166 (622)
++.. ++|+++|++||+.+||..|||.||+.|..+.+. +.+++..++.+..-|+.+||... ++.+ |
T Consensus 71 ~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~--~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----P 143 (263)
T COG1127 71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KLPESLIRELVLMKLELVGLRGAAADLY-----P 143 (263)
T ss_pred chhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc--cCCHHHHHHHHHHHHHhcCCChhhhhhC-----c
Confidence 9854 378999999999999999999999999876654 45778888899999999999877 7887 4
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
.+ ||||||||+++||||+.||++|++||||+||||.++..+.++|+++.++.|.|+++||||. ++++.+|||+++|
T Consensus 144 sE---LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L 219 (263)
T COG1127 144 SE---LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVL 219 (263)
T ss_pred hh---hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEE
Confidence 44 9999999999999999999999999999999999999999999999998899999999996 6899999999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
.+|+++++|+++++.
T Consensus 220 ~~gkv~~~Gt~~el~ 234 (263)
T COG1127 220 ADGKVIAEGTPEELL 234 (263)
T ss_pred eCCEEEEeCCHHHHH
Confidence 999999999999886
No 14
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-49 Score=386.23 Aligned_cols=209 Identities=29% Similarity=0.376 Sum_probs=187.3
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..+++++|+++| |+..+|+++||++ .+|+.+.++|+ ||||||||||+|+|+.+| .+|+|.++|++
T Consensus 2 ~~l~i~~v~~~f--~~~~vl~~i~L~v-----~~GEfvsilGp-----SGcGKSTLLriiAGL~~p---~~G~V~~~g~~ 66 (248)
T COG1116 2 ALLEIEGVSKSF--GGVEVLEDINLSV-----EKGEFVAILGP-----SGCGKSTLLRLIAGLEKP---TSGEVLLDGRP 66 (248)
T ss_pred ceEEEEeeEEEe--CceEEeccceeEE-----CCCCEEEEECC-----CCCCHHHHHHHHhCCCCC---CCceEEECCcc
Confidence 357889999996 7799999999999 66767777765 589999999999999999 59999999999
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
+ ......+|||||++.|+|++||.||+.++..... .++++++++++++|+.+||.+..|+++.. ||||
T Consensus 67 v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P~q--------LSGG 134 (248)
T COG1116 67 V-TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYPHQ--------LSGG 134 (248)
T ss_pred c-CCCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCccc--------cChH
Confidence 8 4456789999999999999999999999987754 35566777999999999999999999444 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC--CceE
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTA 252 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~--G~iv 252 (622)
|||||+|||||+.+|++||||||+++||+.++.++.+.+.+++++.++||++||||. +|+..++|||++|++ |++.
T Consensus 135 MrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 135 MRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999999999999999999999999998899999999996 688889999999998 4453
No 15
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-49 Score=408.94 Aligned_cols=220 Identities=23% Similarity=0.343 Sum_probs=201.2
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| |+..+++++||++ ++|+-++++||+ |||||||||+|+|+..| ++|+|.++|++
T Consensus 4 ~~l~i~~v~k~y--g~~~av~~isl~i-----~~Gef~~lLGPS-----GcGKTTlLR~IAGfe~p---~~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSF--GDFTAVDDISLDI-----KKGEFVTLLGPS-----GCGKTTLLRMIAGFEQP---SSGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeec--CCeeEEecceeee-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEE
Confidence 467899999996 7999999999999 667777777664 89999999999999999 59999999999
Q ss_pred cCc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 96 VEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 96 ~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
++. ..+|.+|+|||+.+|||+|||+||++|+.+++. ...+++++++++++++.++|++.+++++.+ ||
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~p~q--------LS 138 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRKPHQ--------LS 138 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhChhh--------hC
Confidence 987 468999999999999999999999999987442 235566888999999999999999999555 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
|||||||++||||+.+|++||||||.|+||..-+.++...++++.++.|.|.|++|||. +|+..++|||++|++|+|..
T Consensus 139 GGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 139 GGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred hHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceee
Confidence 99999999999999999999999999999999999999999999998899999999995 79999999999999999999
Q ss_pred ecChHHHH
Q psy2519 254 IGSKDAAL 261 (622)
Q Consensus 254 ~G~~~~~~ 261 (622)
.|+|+++.
T Consensus 218 ~gtP~eiY 225 (352)
T COG3842 218 VGTPEEIY 225 (352)
T ss_pred cCCHHHHh
Confidence 99999885
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-48 Score=403.57 Aligned_cols=219 Identities=25% Similarity=0.349 Sum_probs=201.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+| |+..+++++|+++ +.|+-.+++||+ |||||||||+|+|+.+| ++|+|.++|+++
T Consensus 3 ~i~l~~v~K~y--g~~~~l~~i~l~i-----~~Gef~vllGPS-----GcGKSTlLr~IAGLe~~---~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSF--GSFEVLKDVNLDI-----EDGEFVVLLGPS-----GCGKSTLLRMIAGLEEP---TSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEc--CCceeeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence 46899999996 7655899999999 667777777664 89999999999999999 599999999999
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
+. ..+|.||+|||+.+|||+|||+||+.|+.+.+. .++++.+++|+++.+.++|++..|+++.. |||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P~~--------LSG 136 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKPLQ--------LSG 136 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcCccc--------CCh
Confidence 87 367899999999999999999999999998864 46788899999999999999999999665 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|+++|||||.|+||+..+.++...|+++.++.|.|+|.+|||. .|+..++|||++|++|++...
T Consensus 137 GQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~ 215 (338)
T COG3839 137 GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQV 215 (338)
T ss_pred hhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeec
Confidence 9999999999999999999999999999999999999999999988899999999995 789999999999999999999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+|.++.+
T Consensus 216 g~p~ely~ 223 (338)
T COG3839 216 GTPLELYE 223 (338)
T ss_pred CChHHHhh
Confidence 99998863
No 17
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.7e-48 Score=378.49 Aligned_cols=208 Identities=31% Similarity=0.442 Sum_probs=183.1
Q ss_pred cccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++||++.|..|. .++|+++||++ ++|+.++|+|| |||||||||++|+|+.+| ++|+|.++|++
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i-----~~Ge~vaI~Gp-----SGSGKSTLLniig~ld~p---t~G~v~i~g~d 68 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEI-----EAGEFVAIVGP-----SGSGKSTLLNLLGGLDKP---TSGEVLINGKD 68 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEE-----cCCCEEEEECC-----CCCCHHHHHHHHhcccCC---CCceEEECCEE
Confidence 56899999987665 57999999999 67777777766 489999999999999999 59999999998
Q ss_pred cCc-------c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccC-CccCCcCC
Q psy2519 96 VEG-------K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH-TRIGSSSI 166 (622)
Q Consensus 96 ~~~-------~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~v~~~~~ 166 (622)
++. . .++.||||||+..|.|++||+||+.++..+... +..+..++++++++.+||.+..+ +++.+
T Consensus 69 ~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~p~e--- 142 (226)
T COG1136 69 LTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKKPSE--- 142 (226)
T ss_pred cCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCCchh---
Confidence 864 1 468899999999999999999999998766542 22255677889999999997766 76555
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+|||||+.+|+++|+||||++||+.++.+|++++++++++.|+|||++|||+ ++...|||++.|
T Consensus 143 -----LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l 215 (226)
T COG1136 143 -----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIEL 215 (226)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999987799999999996 788999999999
Q ss_pred cCCce
Q psy2519 247 ADSRT 251 (622)
Q Consensus 247 ~~G~i 251 (622)
.+|++
T Consensus 216 ~dG~~ 220 (226)
T COG1136 216 KDGKI 220 (226)
T ss_pred eCCee
Confidence 99994
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.9e-47 Score=395.31 Aligned_cols=222 Identities=30% Similarity=0.383 Sum_probs=200.1
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.++++||++.| | ++.+|++||+++ ++|+.+.++|+| |||||||||+|+|+.+| ++|+|.++|++
T Consensus 4 ~i~~~~l~k~~--~~~~~~l~~vs~~i-----~~Gei~gllG~N-----GAGKTTllk~l~gl~~p---~~G~i~i~G~~ 68 (293)
T COG1131 4 VIEVRNLTKKY--GGDKTALDGVSFEV-----EPGEIFGLLGPN-----GAGKTTLLKILAGLLKP---TSGEILVLGYD 68 (293)
T ss_pred eeeecceEEEe--CCCCEEEeceeEEE-----cCCeEEEEECCC-----CCCHHHHHHHHhCCcCC---CceEEEEcCEe
Confidence 45779999996 7 689999999999 677788888887 79999999999999999 59999999999
Q ss_pred cCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 96 VEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 96 ~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
... +.++++|||+|++.++|.+||+|||.|.+.++.... ...+++++++++.+||.+..++++++ |
T Consensus 69 ~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~~~--------l 137 (293)
T COG1131 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKVRT--------L 137 (293)
T ss_pred CccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcchhh--------c
Confidence 865 578899999999999999999999999999986432 44567899999999999877777777 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|+|||||++||+||+++|++|||||||+||||.++.++.++|++++++.|+||+++||++ +++.++||||++|++|+++
T Consensus 138 S~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~ 216 (293)
T COG1131 138 SGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKII 216 (293)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999985448999999996 7899999999999999999
Q ss_pred EecChHHHHHHHH
Q psy2519 253 FIGSKDAALAFLE 265 (622)
Q Consensus 253 ~~G~~~~~~~~~~ 265 (622)
+.|+++++...+.
T Consensus 217 ~~g~~~~l~~~~~ 229 (293)
T COG1131 217 AEGTPEELKEKFG 229 (293)
T ss_pred EeCCHHHHHHhhc
Confidence 9999998766554
No 19
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-48 Score=372.11 Aligned_cols=222 Identities=26% Similarity=0.358 Sum_probs=197.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|+ |++++|++||+++ .+|+.++|+|++ |||||||||+|+|+..| .+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I-----~~GE~VaiIG~S-----GaGKSTLLR~lngl~d~---t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEI-----NQGEMVAIIGPS-----GAGKSTLLRSLNGLVDP---TSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEe-----CCCcEEEEECCC-----CCcHHHHHHHHhcccCC---CcceEEecccch
Confidence 578999999985 8889999999999 677777777664 89999999999999998 589999999887
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-----cccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-----RVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
.. ++|+++||+||+++|.|.+||.||+..+..-+.+. ....++.+.++-+.|+++|+.+.+.++.++
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~- 147 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAST- 147 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhcc-
Confidence 64 36899999999999999999999998864332210 112234556778999999999999999888
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||+|||+|||||+.+|+++|.|||+++|||.++.++++.|++++++.|.|||++.|+. +.+.++|||++
T Consensus 148 -------LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Rii 219 (258)
T COG3638 148 -------LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRII 219 (258)
T ss_pred -------CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhhe
Confidence 9999999999999999999999999999999999999999999999998999999999996 68899999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
-|++|+++|+|+++++-
T Consensus 220 gl~~G~ivfDg~~~el~ 236 (258)
T COG3638 220 GLKAGRIVFDGPASELT 236 (258)
T ss_pred EecCCcEEEeCChhhhh
Confidence 99999999999998764
No 20
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-47 Score=383.02 Aligned_cols=221 Identities=25% Similarity=0.370 Sum_probs=198.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE--
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK-- 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~-- 94 (622)
++.++|+++. +|+.++++++++.+ ++|+.+.++|++ |||||||||+|+|+..| ++|.|.+||+
T Consensus 2 ~i~i~~~~~~--~~~~~a~~di~l~i-----~~Ge~vaLlGpS-----GaGKsTlLRiIAGLe~p---~~G~I~~~~~~l 66 (345)
T COG1118 2 SIRINNVKKR--FGAFGALDDISLDI-----KSGELVALLGPS-----GAGKSTLLRIIAGLETP---DAGRIRLNGRVL 66 (345)
T ss_pred ceeehhhhhh--cccccccccceeee-----cCCcEEEEECCC-----CCcHHHHHHHHhCcCCC---CCceEEECCEec
Confidence 4678899997 58999999999999 567777777665 89999999999999999 5999999999
Q ss_pred -ecCc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 95 -PVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 95 -~~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
|.++ ...|+||||||+..||++|||.|||+|+.+.+. ...++.+++.++.++|+.+.|++..++++.+
T Consensus 67 ~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~-~~p~~~~~r~rv~elL~lvqL~~la~ryP~Q-------- 137 (345)
T COG1118 67 FDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-ERPSEAEIRARVEELLRLVQLEGLADRYPAQ-------- 137 (345)
T ss_pred cchhccchhhcceeEEEechhhcccchHHhhhhhcccccc-cCCChhhHHHHHHHHHHHhcccchhhcCchh--------
Confidence 5544 246889999999999999999999999987762 2335667888999999999999999998544
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||++||||+.+|++||||||+++||...+.++.+.|+++.++.|.|+++||||+ +|+.++||||++|++|+|
T Consensus 138 LSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~I 216 (345)
T COG1118 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRI 216 (345)
T ss_pred cChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCee
Confidence 9999999999999999999999999999999999999999999999987799999999996 799999999999999999
Q ss_pred EEecChHHHHH
Q psy2519 252 AFIGSKDAALA 262 (622)
Q Consensus 252 v~~G~~~~~~~ 262 (622)
...|+++|+.+
T Consensus 217 eqvg~p~ev~~ 227 (345)
T COG1118 217 EQVGPPDEVYD 227 (345)
T ss_pred eeeCCHHHHhc
Confidence 99999998853
No 21
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-47 Score=358.48 Aligned_cols=213 Identities=24% Similarity=0.289 Sum_probs=191.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|.|..| .++|+++|+++ .+|+-..+.|+ ||||||||||+|.+..+| ++|+|.++|+++
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i-----~~Gef~fl~Gp-----SGAGKSTllkLi~~~e~p---t~G~i~~~~~dl 66 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHI-----PKGEFVFLTGP-----SGAGKSTLLKLIYGEERP---TRGKILVNGHDL 66 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEee-----cCceEEEEECC-----CCCCHHHHHHHHHhhhcC---CCceEEECCeec
Confidence 46889999999766 78999999999 45555555544 599999999999999999 599999999998
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
+. .+||+||+||||..|.+..||+||++|+.+... .++.+.+++|.++|+.+||.+.++..+.+
T Consensus 67 ~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~lP~~------ 137 (223)
T COG2884 67 SRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARALPSQ------ 137 (223)
T ss_pred ccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcCccc------
Confidence 65 379999999999999999999999999987764 45677889999999999999999888444
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||||+||||++.+|++||.||||.+|||..+.+|++++.++++ .|+||++.||| ...+..+-.|++.|++|
T Consensus 138 --LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd-~~lv~~~~~rvl~l~~G 213 (223)
T COG2884 138 --LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHD-LELVNRMRHRVLALEDG 213 (223)
T ss_pred --cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEecc-HHHHHhccCcEEEEeCC
Confidence 999999999999999999999999999999999999999999999998 89999999999 47888888999999999
Q ss_pred ceEEecC
Q psy2519 250 RTAFIGS 256 (622)
Q Consensus 250 ~iv~~G~ 256 (622)
+++.+..
T Consensus 214 rl~~d~~ 220 (223)
T COG2884 214 RLVRDES 220 (223)
T ss_pred EEEeccc
Confidence 9997654
No 22
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.1e-47 Score=384.16 Aligned_cols=221 Identities=24% Similarity=0.346 Sum_probs=197.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| |++++++++|+++ .+|+.++|+||| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y--~~~~il~~ls~~i-----~~G~i~~iiGpN-----G~GKSTLLk~l~g~l~p---~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGY--GGKPILDDLSFSI-----PKGEITGILGPN-----GSGKSTLLKCLAGLLKP---KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEE--CCeeEEecceEEe-----cCCcEEEEECCC-----CCCHHHHHHHHhccCCC---CCCEEEECCCch
Confidence 46889999997 7889999999999 678888888887 79999999999999999 489999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-cccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ++.+.+|||||+....+.+||+|-+.++..-+... ....++..+.+++.|+.+|+.+.+++.+.+
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~-------- 138 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-------- 138 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccc--------
Confidence 65 47899999999998889999999999985433211 112234455799999999999999999888
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||.|||||+.+|++|||||||+.||...+.+++++++++++++|+|||+++||+ +.+.++||++++|++|++
T Consensus 139 LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i 217 (258)
T COG1120 139 LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKI 217 (258)
T ss_pred cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999987899999999997 688999999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+|++++
T Consensus 218 ~a~G~p~evl 227 (258)
T COG1120 218 VAQGTPEEVL 227 (258)
T ss_pred EeecCcchhc
Confidence 9999999775
No 23
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-47 Score=361.23 Aligned_cols=233 Identities=25% Similarity=0.336 Sum_probs=207.0
Q ss_pred CcccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++.+++++| |+ ++++++|++++ +.|+.+.++|+| ||||||+||+|++++.| ++|.|+++|.+
T Consensus 1 Ml~v~~l~K~y--~~~v~AvrdVSF~a-----e~Gei~GlLG~N-----GAGKTT~LRmiatlL~P---~~G~v~idg~d 65 (245)
T COG4555 1 MLEVTDLTKSY--GSKVQAVRDVSFEA-----EEGEITGLLGEN-----GAGKTTLLRMIATLLIP---DSGKVTIDGVD 65 (245)
T ss_pred Ceeeeehhhhc--cCHHhhhhheeEEe-----ccceEEEEEcCC-----CCCchhHHHHHHHhccC---CCceEEEeecc
Confidence 57889999997 54 55999999999 677788888887 79999999999999999 59999999999
Q ss_pred cCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 96 VEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 96 ~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
..+ ..|++||.++.+..++..||++|||.|.++++. +...+.+++++++.+.++|.++.|+++++ +
T Consensus 66 ~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~~--------~ 134 (245)
T COG4555 66 TVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVGE--------F 134 (245)
T ss_pred cccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHhh--------h
Confidence 865 479999999988899999999999999999875 45677788999999999999999999988 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|.||||||+|||||+++|++++|||||||||..++..+.+.++++.. +|++||++||.+ ++++++||||+++++|+++
T Consensus 135 S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH~m-~EvealCDrvivlh~Gevv 212 (245)
T COG4555 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSHIM-QEVEALCDRVIVLHKGEVV 212 (245)
T ss_pred chhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecccH-HHHHHhhheEEEEecCcEE
Confidence 99999999999999999999999999999999999999999999987 799999999996 7999999999999999999
Q ss_pred EecChHHHHHHHHhCCCCCCCCCChHHHHHHhh
Q psy2519 253 FIGSKDAALAFLESQGYPCPYGYNPADFLIKSL 285 (622)
Q Consensus 253 ~~G~~~~~~~~~~~~g~~~p~~~n~~d~~~~~~ 285 (622)
+.|+++++..-- ...|+.+.+...+
T Consensus 213 ~~gs~~~l~~r~--------~~~~le~~f~~~l 237 (245)
T COG4555 213 LEGSIEALDART--------VLRNLEEIFAFAL 237 (245)
T ss_pred EcCCHHHHHHHH--------hhcCHHHHHHHhh
Confidence 999999765321 1245555555544
No 24
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-46 Score=356.47 Aligned_cols=221 Identities=22% Similarity=0.325 Sum_probs=191.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
.++++||++.| |+.++|++||+.+ .+++.++++|| ||||||||||++..... |+...+|+|.++|+
T Consensus 7 ~~~~~~l~~yY--g~~~aL~~i~l~i-----~~~~VTAlIGP-----SGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ 74 (253)
T COG1117 7 AIEVRDLNLYY--GDKHALKDINLDI-----PKNKVTALIGP-----SGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGK 74 (253)
T ss_pred eeEecceeEEE--CchhhhccCceec-----cCCceEEEECC-----CCcCHHHHHHHHHhhcccCcCceEEEEEEECCe
Confidence 46788999986 8999999999999 56667777766 48999999999998764 45678999999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCC
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~ 167 (622)
++-. ++|+++|+|||.+.-|| +|++||+.|+.+++... + ++..++|++.|+...|.+. .|+.-.+ +
T Consensus 75 ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~--~-~~ldeiVe~sLk~AaLWdEVKDrL~~s--a- 147 (253)
T COG1117 75 NIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK--D-KELDEIVESSLKKAALWDEVKDRLHKS--A- 147 (253)
T ss_pred eccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc--h-HHHHHHHHHHHHHhHhHHHhHHHhhCC--c-
Confidence 9854 47999999999999999 89999999999887632 2 6677889999999999654 4443222 2
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
.+||||||||++|||||+.+|+|||||||||+|||.++.+|-++|.+|++ .-|||+|||++ ..+.+.+|+..++.
T Consensus 148 --~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnm-qQAaRvSD~taFf~ 222 (253)
T COG1117 148 --LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNM-QQAARVSDYTAFFY 222 (253)
T ss_pred --cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCH-HHHHHHhHhhhhhc
Confidence 34999999999999999999999999999999999999999999999985 68999999996 78999999999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
.|++++.|++++++
T Consensus 223 ~G~LvE~g~T~~iF 236 (253)
T COG1117 223 LGELVEFGPTDKIF 236 (253)
T ss_pred ccEEEEEcCHHhhh
Confidence 99999999999775
No 25
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-45 Score=366.89 Aligned_cols=221 Identities=21% Similarity=0.284 Sum_probs=197.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.+++++|++|+|..+ .++++++|+++ ++|+.++++|+| |||||||+++|+|+++| .+|+|.++|.+
T Consensus 2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i-----~~Ge~~~i~G~n-----GsGKSTL~~~l~GLl~p---~~G~v~~~g~~ 67 (235)
T COG1122 2 RMIEAENLSFRYPGR-KAALKDVSLEI-----EKGERVLLIGPN-----GSGKSTLLKLLNGLLKP---TSGEVLVDGLD 67 (235)
T ss_pred ceEEEEEEEEEcCCC-ceeeeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHcCcCcC---CCCEEEECCee
Confidence 356789999998656 78999999999 677788888777 79999999999999999 58999999999
Q ss_pred cC--c---cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 96 VE--G---KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 96 ~~--~---~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
+. . ++|+++|||||++ ..+..-||.|.++|+..... .+.++.+++++++++.+|+.+.+++.+.+
T Consensus 68 ~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g---~~~~e~~~rv~~~l~~vgl~~~~~r~p~~------ 138 (235)
T COG1122 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG---LPREEIEERVAEALELVGLEELLDRPPFN------ 138 (235)
T ss_pred ccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC---CCHHHHHHHHHHHHHHcCchhhccCCccc------
Confidence 76 2 5899999999996 46667799999999986653 45567888999999999999999988665
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||||+||.+|+.+|++|+|||||+|||+..+.++++.+++++++.|+|+|++|||. +.+.+++||+++|++|
T Consensus 139 --LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G 215 (235)
T COG1122 139 --LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDG 215 (235)
T ss_pred --cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999986689999999996 7899999999999999
Q ss_pred ceEEecChHHHHH
Q psy2519 250 RTAFIGSKDAALA 262 (622)
Q Consensus 250 ~iv~~G~~~~~~~ 262 (622)
+++++|+|.+++.
T Consensus 216 ~i~~~g~p~~i~~ 228 (235)
T COG1122 216 KILADGDPAEIFN 228 (235)
T ss_pred EEeecCCHHHHhh
Confidence 9999999987753
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.8e-45 Score=384.55 Aligned_cols=220 Identities=22% Similarity=0.311 Sum_probs=195.2
Q ss_pred CcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||+++|..+ ..++|+++|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i-----~~Gei~gIiG~s-----GaGKSTLlr~I~gl~~p---~~G~I~i~G~ 67 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHV-----PAGQIYGVIGAS-----GAGKSTLIRCVNLLERP---TSGSVIVDGQ 67 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCE
Confidence 46889999998532 357999999999 677788888776 89999999999999999 5899999999
Q ss_pred ecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 95 PVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
++.. ..|+.+||+||+..+++.+||+||+.++..... .++.+.++++.++++.+||.+..|+++++
T Consensus 68 ~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~~~---- 140 (343)
T TIGR02314 68 DLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYPSN---- 140 (343)
T ss_pred ECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChhh----
Confidence 9853 147789999999999999999999999865432 24455667889999999999988988666
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++.|.|||++||++ +.+.++||++++|+
T Consensus 141 ----LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~ 215 (343)
T TIGR02314 141 ----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVIS 215 (343)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999985699999999996 68889999999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|++++.|+++++.
T Consensus 216 ~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 216 NGELIEQGTVSEIF 229 (343)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999998774
No 27
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-45 Score=388.13 Aligned_cols=219 Identities=21% Similarity=0.275 Sum_probs=195.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.|. |+.++|+++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~i~~l~~~~~-~~~~~l~~vsl~i-----~~Ge~~~llG~s-----GsGKSTLLr~iaGl~~p---~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD-GKTQVIKGIDLDV-----ADGEFIVLVGPS-----GCGKSTLLRMVAGLERI---TSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC-CCCEEEeeeeEEE-----cCCCEEEEECCC-----CCcHHHHHHHHHCCCCC---CceEEEECCEEC
Confidence 468899999863 5678999999999 677778888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|++||+||+.|+.+.+. .++.+..++++++++.+||.+..++++.+ |||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------LSg 137 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG---MPKAEIEERVAEAARILELEPLLDRKPRE--------LSG 137 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhHhhCChhh--------CCH
Confidence 64 245789999999999999999999999876432 34455667899999999999999998766 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||++||+.++.++.+.|+++.++.|+|+|++|||+ .++.++||++++|++|+++..
T Consensus 138 Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~ 216 (356)
T PRK11650 138 GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQI 216 (356)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999999886699999999996 689999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 217 g~~~~~~ 223 (356)
T PRK11650 217 GTPVEVY 223 (356)
T ss_pred CCHHHHH
Confidence 9999875
No 28
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.6e-45 Score=380.76 Aligned_cols=218 Identities=29% Similarity=0.380 Sum_probs=195.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|.| |+.++++++|+++ ++|+.+.++|+| |||||||+++|+|+++| .+|+|.++|.++
T Consensus 7 ~i~i~~l~k~~--~~~~~l~~vsl~i-----~~Gei~gllGpN-----GaGKSTLl~~l~Gl~~p---~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRY--GDKLVVDGLSFHV-----QRGECFGLLGPN-----GAGKTTTLRMLLGLTHP---DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEE--CCeEEEecceEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEec
Confidence 57899999996 6788999999999 677788888887 89999999999999999 589999999998
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.. ..++++|||+|++.+++.+||+||+.+.+..+. .+..+.+++++++++.++|.+..++.+++ ||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS 140 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKVGE--------LS 140 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCchhh--------CC
Confidence 64 367889999999999999999999998776543 23344556788999999999989998877 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
||||||++||+||+++|++|+|||||+|||+.++.++.+.|+++++ +|+|||++||++ +++.++||||++|++|++++
T Consensus 141 ~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l-~e~~~~~d~i~il~~G~i~~ 218 (306)
T PRK13537 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVIEEGRKIA 218 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999986 699999999996 68999999999999999999
Q ss_pred ecChHHHHH
Q psy2519 254 IGSKDAALA 262 (622)
Q Consensus 254 ~G~~~~~~~ 262 (622)
.|+++++..
T Consensus 219 ~g~~~~l~~ 227 (306)
T PRK13537 219 EGAPHALIE 227 (306)
T ss_pred ECCHHHHHh
Confidence 999998753
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-45 Score=386.18 Aligned_cols=218 Identities=22% Similarity=0.292 Sum_probs=196.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+..+++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~llGps-----GsGKSTLLr~IaGl~~p---~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRF--GSNTVIDNLNLTI-----KQGTMVTLLGPS-----GCGKTTVLRLVAGLEKP---TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEE--CCeEEEeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHHCCCCC---CceEEEECCEEC
Confidence 57889999996 6778999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||+..++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++.+ |||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~~~--------LSg 139 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYVDQ--------ISG 139 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCChhh--------CCH
Confidence 65 246789999999999999999999999876542 34456677899999999999988888666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|+|+|++|||+ +++.+++||+++|++|+++..
T Consensus 140 Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~ 218 (351)
T PRK11432 140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQI 218 (351)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999876699999999996 688999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 219 g~~~~~~ 225 (351)
T PRK11432 219 GSPQELY 225 (351)
T ss_pred cCHHHHH
Confidence 9999875
No 30
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-45 Score=363.99 Aligned_cols=219 Identities=28% Similarity=0.403 Sum_probs=187.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| +..++|+++|+++ .+|+.+.++||| |||||||+|+|.|+++| .+|+|.++|++
T Consensus 3 ~~i~v~nl~v~y--~~~~vl~~i~l~v-----~~G~~~~iiGPN-----GaGKSTLlK~iLGll~p---~~G~i~~~g~~ 67 (254)
T COG1121 3 PMIEVENLTVSY--GNRPVLEDISLSV-----EKGEITALIGPN-----GAGKSTLLKAILGLLKP---SSGEIKIFGKP 67 (254)
T ss_pred cEEEEeeeEEEE--CCEeeeeccEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCcC---CcceEEEcccc
Confidence 357899999997 4337999999999 677777788777 89999999999999999 59999999998
Q ss_pred cCcc-ccccEEEEecCC--CCCCCCCHHHHHHHHHHcCC--CccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 96 VEGK-FRSACGFMYQHD--LFSPSLTVYEHLYFMALLKL--DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~~-~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~--~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
.... -+.+||||||.. ..-..+||+|-+..+...+. -+... ++.++.++++|+++|+.+.+|+.+++
T Consensus 68 ~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~~------- 139 (254)
T COG1121 68 VRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIGE------- 139 (254)
T ss_pred ccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCcccc-------
Confidence 8653 357899999954 22334699999988743322 11223 33467899999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||+|||-|||||+.+|++|+|||||+|+|+.++.++.++|++++++ |+||++||||+ ..+.+.||+|+.| +++
T Consensus 140 -LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL-~~v~~~~D~vi~L-n~~ 215 (254)
T COG1121 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDL-GLVMAYFDRVICL-NRH 215 (254)
T ss_pred -cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCc-HHhHhhCCEEEEE-cCe
Confidence 9999999999999999999999999999999999999999999999985 99999999997 6899999999999 568
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 216 ~~~~G~~~~~~ 226 (254)
T COG1121 216 LIASGPPEEVL 226 (254)
T ss_pred eEeccChhhcc
Confidence 88999999875
No 31
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=7.8e-45 Score=386.38 Aligned_cols=219 Identities=22% Similarity=0.319 Sum_probs=196.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~Gps-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRF--GAFTALKDISLSV-----KKGEFVCLLGPS-----GCGKTTLLRIIAGLERQ---TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEe--CCeEEEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHCCCCC---CceEEEECCEEC
Confidence 47889999996 6677999999999 677788888776 89999999999999998 589999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||+..++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++.+.+ |||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~~~~~~~~l~~l~L~~~~~~~~~~--------LSg 137 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG---MGRAEVAERVAELLDLVGLPGSERKYPGQ--------LSG 137 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCCchhhCChhh--------CCH
Confidence 64 346789999999999999999999999876432 34456677899999999999999988666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||++||+.++.++.+.|+++.++.|.|+|++|||+ +++.+++||+++|++|++++.
T Consensus 138 Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~ 216 (353)
T TIGR03265 138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQV 216 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999886699999999996 689999999999999999999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++++.+
T Consensus 217 g~~~~~~~ 224 (353)
T TIGR03265 217 GTPQEIYR 224 (353)
T ss_pred cCHHHHHh
Confidence 99998753
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.4e-44 Score=385.20 Aligned_cols=219 Identities=20% Similarity=0.299 Sum_probs=196.0
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee--eEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID--GDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~--G~I~~~G 93 (622)
+.++++||+++| |+..+++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+ |+|.++|
T Consensus 4 ~~l~~~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~llGps-----GsGKSTLLr~iaGl~~p---~~~~G~i~~~g 68 (362)
T TIGR03258 4 GGIRIDHLRVAY--GANTVLDDLSLEI-----EAGELLALIGKS-----GCGKTTLLRAIAGFVKA---AGLTGRIAIAD 68 (362)
T ss_pred eEEEEEEEEEEE--CCeEEEeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCCEEEEECC
Confidence 357899999997 6678999999999 677788888776 89999999999999999 47 9999999
Q ss_pred EecCc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 94 KPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 94 ~~~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
+++.. ..++.+|||||++.++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++.+
T Consensus 69 ~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~-------- 137 (362)
T TIGR03258 69 RDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQK---MPKADIAERVADALKLVGLGDAAAHLPAQ-------- 137 (362)
T ss_pred EECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCCchhhCChhh--------
Confidence 99864 246789999999999999999999999876442 34455667899999999999999998766
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR-KKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~-g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++. |+|+|++|||+ +++.+++|||++|++|+
T Consensus 138 LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~ 216 (362)
T TIGR03258 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGR 216 (362)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999998754 89999999996 68899999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++..|+++++.
T Consensus 217 i~~~g~~~~~~ 227 (362)
T TIGR03258 217 LAAHGEPQALY 227 (362)
T ss_pred EEEEcCHHHHH
Confidence 99999999875
No 33
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7e-45 Score=337.32 Aligned_cols=216 Identities=24% Similarity=0.368 Sum_probs=189.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++.+++|.++| +..+- ..|+++ ..|+.+.|+|+ ||||||||||+|+|...| .+|+|++||++.
T Consensus 1 ~l~L~~V~~~y--~~~~~--~fdl~v-----~~ge~vAi~Gp-----SGaGKSTLLnLIAGF~~P---~~G~i~i~g~d~ 63 (231)
T COG3840 1 MLALDDVRFSY--GHLPM--RFDLTV-----PAGEIVAILGP-----SGAGKSTLLNLIAGFETP---ASGEILINGVDH 63 (231)
T ss_pred CccccceEEee--CcceE--EEEEee-----cCCcEEEEECC-----CCccHHHHHHHHHhccCC---CCceEEEcCeec
Confidence 46789999986 55443 345556 46777777766 489999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
+. ..+|=++++||+.+||.+|||.+|+.++..-.+ +.. .+.+++++.++.++||..+.++.+++ |||
T Consensus 64 t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP~~--------LSG 132 (231)
T COG3840 64 TASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLPGE--------LSG 132 (231)
T ss_pred CcCCcccCChhhhhhccccchhhhhhhhhcccCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCccc--------cCc
Confidence 76 467889999999999999999999999754332 122 45677899999999999999999666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||++||.|+.+-+||+||||+|+|||.-+.++..++.+++++++.|+++|||+| +++.+++|+++++++|||.+.
T Consensus 133 GqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~ 211 (231)
T COG3840 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQ 211 (231)
T ss_pred hHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEee
Confidence 9999999999999999999999999999999999999999999998999999999998 688999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+.++.+
T Consensus 212 g~~~~~~ 218 (231)
T COG3840 212 GSTQELL 218 (231)
T ss_pred ccHHHHh
Confidence 9998664
No 34
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-44 Score=351.13 Aligned_cols=220 Identities=25% Similarity=0.321 Sum_probs=191.2
Q ss_pred CCcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
.+++++|++++|..+. .+++++||+++ .+|+.+.|+|. ||||||||.++|+|+.+| .+|+|.++|
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i-----~~Ge~lgivGe-----SGsGKSTL~r~l~Gl~~p---~~G~I~~~G 68 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEI-----ERGETLGIVGE-----SGSGKSTLARLLAGLEKP---SSGSILLDG 68 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEe-----cCCCEEEEEcC-----CCCCHHHHHHHHhcccCC---CCceEEECC
Confidence 3578999999973322 14999999999 67888888876 489999999999999999 599999999
Q ss_pred EecCc-----cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcC
Q psy2519 94 KPVEG-----KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSS 165 (622)
Q Consensus 94 ~~~~~-----~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~ 165 (622)
++..+ .+++.+-+||||+ .+.|..||++.|.-+..... .++. .+++.++++.+||.+ .++++
T Consensus 69 ~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~---~~~~--~~~i~~~L~~VgL~~~~l~R~----- 138 (252)
T COG1124 69 KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG---LSKS--QQRIAELLDQVGLPPSFLDRR----- 138 (252)
T ss_pred cccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC---ccHH--HHHHHHHHHHcCCCHHHHhcC-----
Confidence 88765 3678999999997 69999999999988766532 2333 334899999999964 56777
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|++ ||||||||++|||||+.+|++|+||||||+||+..+.+|+++|.++.++.|.|.|++|||. ..+.++||||++
T Consensus 139 P~e---LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~V 214 (252)
T COG1124 139 PHE---LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAV 214 (252)
T ss_pred chh---cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheee
Confidence 555 9999999999999999999999999999999999999999999999998899999999995 799999999999
Q ss_pred ecCCceEEecChHHHHH
Q psy2519 246 LADSRTAFIGSKDAALA 262 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~~ 262 (622)
|++|++++.++.+++..
T Consensus 215 m~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 215 MDNGQIVEIGPTEELLS 231 (252)
T ss_pred eeCCeEEEeechhhhhc
Confidence 99999999999998763
No 35
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-44 Score=347.76 Aligned_cols=218 Identities=25% Similarity=0.351 Sum_probs=194.4
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.+++++||+..| |+.++|++||+++ ++|+.++++|+| |||||||||+|+|+.++ .+|+|.++|+|
T Consensus 2 ~mL~v~~l~~~Y--G~~~~L~gvsl~v-----~~Geiv~llG~N-----GaGKTTlLkti~Gl~~~---~~G~I~~~G~d 66 (237)
T COG0410 2 PMLEVENLSAGY--GKIQALRGVSLEV-----ERGEIVALLGRN-----GAGKTTLLKTIMGLVRP---RSGRIIFDGED 66 (237)
T ss_pred CceeEEeEeecc--cceeEEeeeeeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeeEEECCee
Confidence 467899999986 9999999999999 788888888888 79999999999999998 48999999999
Q ss_pred cCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-CCcccCCccCCcCCCCc
Q psy2519 96 VEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-LMNSQHTRIGSSSITQK 169 (622)
Q Consensus 96 ~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v~~~~~~~~ 169 (622)
++. ..|+.++||||....||.|||+|||..++..+.. +...+..++++.+.+- |.+.++++.|+
T Consensus 67 it~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~------ 136 (237)
T COG0410 67 ITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGT------ 136 (237)
T ss_pred cCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccC------
Confidence 976 3689999999999999999999999998755421 1112223778888884 67888999888
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.|++++++.|.||++|.++. ..+.+++||.++|.+|
T Consensus 137 --LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~G 213 (237)
T COG0410 137 --LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVLENG 213 (237)
T ss_pred --CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999986689999999995 6888999999999999
Q ss_pred ceEEecChHHHH
Q psy2519 250 RTAFIGSKDAAL 261 (622)
Q Consensus 250 ~iv~~G~~~~~~ 261 (622)
+++++|+++++.
T Consensus 214 riv~~G~~~eL~ 225 (237)
T COG0410 214 RIVLSGTAAELL 225 (237)
T ss_pred EEEEecCHHHHh
Confidence 999999999875
No 36
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.7e-44 Score=381.80 Aligned_cols=218 Identities=19% Similarity=0.260 Sum_probs=194.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| |+.++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 14 ~L~l~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~LlGps-----GsGKSTLLr~IaGl~~p---~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSF--DGKEVISNLDLTI-----NNGEFLTLLGPS-----GCGKTTVLRLIAGFETP---DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEE--CCeEEEeeeEEEE-----eCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 36789999986 6678999999999 677778888776 89999999999999998 589999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|++||.||+.|+.+.+. .++.+.+++++++++.+||.+..++++.+ |||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p~~--------LSg 147 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRKPHQ--------LSG 147 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCChhh--------CCH
Confidence 64 246789999999999999999999999865432 24455567889999999999999998666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ .++..++||+++|++|+++..
T Consensus 148 Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~ 226 (375)
T PRK09452 148 GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQD 226 (375)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999986699999999996 688999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 227 g~~~~i~ 233 (375)
T PRK09452 227 GTPREIY 233 (375)
T ss_pred cCHHHHH
Confidence 9999875
No 37
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.4e-44 Score=379.36 Aligned_cols=220 Identities=25% Similarity=0.365 Sum_probs=194.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| |+..+++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++.
T Consensus 3 L~i~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~llGps-----GsGKSTLLr~IaGl~~p---~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSF--GRTQVLNDISLDI-----PSGQMVALLGPS-----GSGKTTLLRIIAGLEHQ---TSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEe--CCeEEEEEeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEECC
Confidence 5789999986 6678999999999 677788888776 89999999999999998 5899999999986
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.+|||||++.++|.+||+||+.|+.+.... ...++++..++++++++.++|.+..++++.+ |||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~--------LSg 139 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ--------LSG 139 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhh--------CCH
Confidence 4 3457899999999999999999999998654211 1123455667899999999999988988766 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|+|++|||+ .++.++||||++|++|++++.
T Consensus 140 Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~ 218 (353)
T PRK10851 140 GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQA 218 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999885699999999996 688999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 219 g~~~~i~ 225 (353)
T PRK10851 219 GTPDQVW 225 (353)
T ss_pred cCHHHHH
Confidence 9999875
No 38
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-44 Score=381.17 Aligned_cols=218 Identities=20% Similarity=0.264 Sum_probs=195.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 19 ~l~l~~v~~~~--~~~~~l~~vsl~i-----~~Ge~~~llGps-----GsGKSTLLr~IaGl~~p---~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSF--DGQHAVDDVSLTI-----YKGEIFALLGAS-----GCGKSTLLRMLAGFEQP---TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 47789999986 6678999999999 677777787776 89999999999999999 589999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|++||.||+.|+.+.+. .++.+.+++++++++.++|.+..++++.+ |||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~~~~--------LSg 152 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRKPHQ--------LSG 152 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCChhh--------CCH
Confidence 64 357789999999999999999999999875432 24455667899999999999988888666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++.|.|+|++|||+ +++..++||+++|++|+++..
T Consensus 153 Gq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 153 GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999999876799999999996 688999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 232 g~~~~~~ 238 (377)
T PRK11607 232 GEPEEIY 238 (377)
T ss_pred cCHHHHH
Confidence 9999875
No 39
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.1e-43 Score=375.87 Aligned_cols=218 Identities=31% Similarity=0.362 Sum_probs=195.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| |+..+++++|+++ .+|+.+.++|+| |||||||+++|+|+++| .+|+|.++|+++
T Consensus 41 ~i~i~nl~k~y--~~~~~l~~is~~i-----~~Gei~gLlGpN-----GaGKSTLl~~L~Gl~~p---~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSY--GDKAVVNGLSFTV-----ASGECFGLLGPN-----GAGKSTIARMILGMTSP---DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcCCCC---CceEEEECCEEC
Confidence 48899999996 7778999999999 678888888887 79999999999999999 489999999998
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.. ..++.+||+||++.+++.+||.||+.+....+. ....+..++++++++.++|.+..++.+++ ||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~~--------LS 174 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVSD--------LS 174 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChhh--------CC
Confidence 64 367889999999999999999999998765542 22334456678899999999999999887 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
||||||++||+||+++|++|||||||+|||+.++.++.+.|+++++ +|+|||++||++ +++.++||||++|++|++++
T Consensus 175 ~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~ 252 (340)
T PRK13536 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIA 252 (340)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987 699999999996 78999999999999999999
Q ss_pred ecChHHHHH
Q psy2519 254 IGSKDAALA 262 (622)
Q Consensus 254 ~G~~~~~~~ 262 (622)
.|+++++..
T Consensus 253 ~g~~~~l~~ 261 (340)
T PRK13536 253 EGRPHALID 261 (340)
T ss_pred EcCHHHHHh
Confidence 999998764
No 40
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-43 Score=358.11 Aligned_cols=218 Identities=26% Similarity=0.375 Sum_probs=189.9
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSF--GGRTVLKGVDLDV-----RRGEILAIIGPS-----GSGKSTLLRLIVGLLRP---DSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 3688999986 6678999999999 678888888887 89999999999999998 5899999999874
Q ss_pred c-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 98 G-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 98 ~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. .+++.+|||+|++.+++.+||+||+.+...... ..+.++..++++++++.+||.+..++.+++
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 136 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAE------- 136 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChhh-------
Confidence 3 246789999999999999999999998754321 123344456788999999998888888776
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|+
T Consensus 137 -LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~ 214 (235)
T cd03261 137 -LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGK 214 (235)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCe
Confidence 9999999999999999999999999999999999999999999999874589999999996 67888999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 215 i~~~g~~~~~~ 225 (235)
T cd03261 215 IVAEGTPEELR 225 (235)
T ss_pred EEEecCHHHHc
Confidence 99999988653
No 41
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=377.14 Aligned_cols=217 Identities=23% Similarity=0.306 Sum_probs=193.4
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 4 l~i~~l~~~~--~~~~vl~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLL~~iaGl~~p---~~G~I~~~g~~i~ 68 (369)
T PRK11000 4 VTLRNVTKAY--GDVVISKDINLDI-----HEGEFVVFVGPS-----GCGKSTLLRMIAGLEDI---TSGDLFIGEKRMN 68 (369)
T ss_pred EEEEEEEEEe--CCeEEEeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence 6789999986 6677999999999 677788888776 89999999999999998 5899999999986
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.+|||+|++.++|.+||+||+.|+...+. .+..+.+++++++++.+||.+..++.+.+ ||||
T Consensus 69 ~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~~~--------LSgG 137 (369)
T PRK11000 69 DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKPKA--------LSGG 137 (369)
T ss_pred CCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCChhh--------CCHH
Confidence 4 245789999999999999999999999865432 23345567889999999999888888776 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
|||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|.|+|++|||+ +++.++||++++|++|+++..|
T Consensus 138 q~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999875699999999996 6888999999999999999999
Q ss_pred ChHHHH
Q psy2519 256 SKDAAL 261 (622)
Q Consensus 256 ~~~~~~ 261 (622)
+++++.
T Consensus 217 ~~~~i~ 222 (369)
T PRK11000 217 KPLELY 222 (369)
T ss_pred CHHHHH
Confidence 999875
No 42
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-44 Score=346.83 Aligned_cols=221 Identities=25% Similarity=0.311 Sum_probs=199.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++ ||+..++++||+++ .+|+.+.+|||| |||||||+|+|+|..+| ++|+|.++|+++
T Consensus 4 lL~v~~l~k~--FGGl~Al~~Vsl~v-----~~Gei~~LIGPN-----GAGKTTlfNlitG~~~P---~~G~v~~~G~~i 68 (250)
T COG0411 4 LLEVRGLSKR--FGGLTAVNDVSLEV-----RPGEIVGLIGPN-----GAGKTTLFNLITGFYKP---SSGTVIFRGRDI 68 (250)
T ss_pred eeeeccceee--cCCEEEEeceeEEE-----cCCeEEEEECCC-----CCCceeeeeeecccccC---CCceEEECCccc
Confidence 4689999998 59999999999999 678888888888 79999999999999999 489999999999
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC--------Cc-cccHHHHHHHHHHHHHHhCCCcccCCccC
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL--------DR-RVKAYQRIALINSLLIELGLMNSQHTRIG 162 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~ 162 (622)
+. ..|..++--||...+|+.|||.||+..++..+. +. ....++.++++.++|+.+||.+.+|+..+
T Consensus 69 t~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~ 148 (250)
T COG0411 69 TGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG 148 (250)
T ss_pred CCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh
Confidence 76 257888999999999999999999999865331 11 11345667889999999999999999998
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.|++++++.|.||+++.||+ ..+..+|||
T Consensus 149 ~--------LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dr 219 (250)
T COG0411 149 N--------LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADR 219 (250)
T ss_pred c--------CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccE
Confidence 8 9999999999999999999999999999999999999999999999986789999999996 799999999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
|++|+.|+++++|+|+++.
T Consensus 220 i~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 220 IVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred EEeccCCcCcccCCHHHHh
Confidence 9999999999999999886
No 43
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-44 Score=355.37 Aligned_cols=205 Identities=26% Similarity=0.315 Sum_probs=187.6
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-------c-cccc
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-------K-FRSA 103 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-------~-~r~~ 103 (622)
+..++++||++ ..|+.++|.|- ||||||||+|+|.++.+| ++|+|+++|+++.+ + .|++
T Consensus 41 vvGv~~~sl~v-----~~GeIfViMGL-----SGSGKSTLvR~~NrLiep---t~G~ilv~g~di~~~~~~~Lr~~Rr~~ 107 (386)
T COG4175 41 VVGVNDASLDV-----EEGEIFVIMGL-----SGSGKSTLVRLLNRLIEP---TRGEILVDGKDIAKLSAAELRELRRKK 107 (386)
T ss_pred EEeeccceeee-----cCCeEEEEEec-----CCCCHHHHHHHHhccCCC---CCceEEECCcchhcCCHHHHHHHHhhh
Confidence 44578889988 56666776655 589999999999999999 59999999999854 1 4688
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHH
Q psy2519 104 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA 183 (622)
Q Consensus 104 igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA 183 (622)
+++|||+..|+|+.||.||..|+.+++. ++++++++++.++|+.+||....++++.+ |||||||||.+|
T Consensus 108 ~sMVFQ~FaLlPhrtVl~Nv~fGLev~G---v~~~er~~~a~~~l~~VgL~~~~~~yp~e--------LSGGMqQRVGLA 176 (386)
T COG4175 108 ISMVFQSFALLPHRTVLENVAFGLEVQG---VPKAEREERALEALELVGLEGYADKYPNE--------LSGGMQQRVGLA 176 (386)
T ss_pred hhhhhhhhccccchhHhhhhhcceeecC---CCHHHHHHHHHHHHHHcCchhhhhcCccc--------ccchHHHHHHHH
Confidence 9999999999999999999999988864 67888999999999999999999999555 999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 184 TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 184 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|||+.+|+|||+|||+|+|||--+.++.+.|.+|.++.++|||++|||. +|+.++.|||.+|++|+++..|+|+|++
T Consensus 177 RAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 177 RALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred HHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhccceEEEecCCeEEEeCCHHHHH
Confidence 9999999999999999999999999999999999988899999999996 7999999999999999999999999987
No 44
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-43 Score=349.67 Aligned_cols=216 Identities=26% Similarity=0.343 Sum_probs=189.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 1 i~~~~~~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKY--GDFEAVRGVSFRV-----RRGEIFGLLGPN-----GAGKTTTIKMLTTLLKP---TSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEE--CCEEeeeceeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEecC
Confidence 3688999986 6678999999999 678888888887 89999999999999998 5999999999875
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.++|.+..++++++ |||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 134 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLVKT--------YSG 134 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChhh--------CCH
Confidence 3 356789999999999999999999998765432 22334456788999999999888888776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.|||+++|++|+++..
T Consensus 135 G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 135 GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999874589999999996 688889999999999999999
Q ss_pred cChHHH
Q psy2519 255 GSKDAA 260 (622)
Q Consensus 255 G~~~~~ 260 (622)
|+++++
T Consensus 214 ~~~~~~ 219 (220)
T cd03265 214 GTPEEL 219 (220)
T ss_pred CChHHc
Confidence 987753
No 45
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-44 Score=338.19 Aligned_cols=219 Identities=24% Similarity=0.335 Sum_probs=198.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.+.++|+.|+| ++.+|+++||+++ ++|+.+.++||| ||||||.+.++.|+.+| .+|+|.+||.++
T Consensus 4 ~L~a~~l~K~y--~kr~Vv~~Vsl~v-----~~GEiVGLLGPN-----GAGKTT~Fymi~Glv~~---d~G~i~ld~~di 68 (243)
T COG1137 4 TLVAENLAKSY--KKRKVVNDVSLEV-----NSGEIVGLLGPN-----GAGKTTTFYMIVGLVRP---DSGKILLDDEDI 68 (243)
T ss_pred EEEehhhhHhh--CCeeeeeeeeEEE-----cCCcEEEEECCC-----CCCceeEEEEEEEEEec---CCceEEECCccc
Confidence 46789999996 8899999999999 788888888887 79999999999999999 499999999999
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
+. ..|..+||+||++..|..|||+||+......+.. ...+.+++++++++|+++++.|.++++..+
T Consensus 69 T~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~s-------- 139 (243)
T COG1137 69 TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYS-------- 139 (243)
T ss_pred ccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccc--------
Confidence 86 3578899999999999999999999988777642 123345666789999999999999999777
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||+|+.|||||+.+|+.++||||++|.||.+..+|.++++.|++ .|..|+++-|+. .|...+|||.+++++|++
T Consensus 140 LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNV-REtL~i~dRaYIi~~G~v 217 (243)
T COG1137 140 LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNV-RETLDICDRAYIISDGKV 217 (243)
T ss_pred cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccH-HHHHhhhheEEEEecCeE
Confidence 999999999999999999999999999999999999999999999998 799999999997 588899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
.++|+|+++.
T Consensus 218 la~G~p~ei~ 227 (243)
T COG1137 218 LAEGSPEEIV 227 (243)
T ss_pred EecCCHHHHh
Confidence 9999999886
No 46
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5.6e-43 Score=366.21 Aligned_cols=218 Identities=31% Similarity=0.378 Sum_probs=192.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| |+.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 4 ~i~~~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~l~G~N-----GaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSY--GDKVVVNDLSFTI-----ARGECFGLLGPN-----GAGKSTIARMLLGMISP---DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEe--CCeEEEcceeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 46889999986 6678999999999 678888888887 89999999999999998 589999999987
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.. ..++.+||++|++.+++.+||+||+.+...... .+..+.+++++++++.++|.+..++.+++ ||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~~~--------LS 137 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRVAL--------LS 137 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCchhh--------CC
Confidence 53 357889999999999999999999987654432 22334455678899999999888888777 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|++++
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~ 215 (303)
T TIGR01288 138 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGRKIA 215 (303)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987 699999999996 68889999999999999999
Q ss_pred ecChHHHHH
Q psy2519 254 IGSKDAALA 262 (622)
Q Consensus 254 ~G~~~~~~~ 262 (622)
.|+++++..
T Consensus 216 ~g~~~~~~~ 224 (303)
T TIGR01288 216 EGRPHALID 224 (303)
T ss_pred EcCHHHHHh
Confidence 999998753
No 47
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-43 Score=371.30 Aligned_cols=220 Identities=21% Similarity=0.321 Sum_probs=193.1
Q ss_pred CcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||+++|..+ +.++++++|+++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i-----~~Gei~~iiG~n-----GsGKSTLlk~L~Gl~~p---~~G~I~~~g~ 67 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHI-----PAGEIFGVIGAS-----GAGKSTLIRCINLLERP---TSGRVLVDGQ 67 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CceEEEECCE
Confidence 36789999998422 467999999999 677788888777 89999999999999998 5899999999
Q ss_pred ecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 95 PVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
++.. ..++.+|||+|++.+++.+||+||+.+...... .++.+.+++++++++.+||.+..++.+.+
T Consensus 68 ~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 140 (343)
T PRK11153 68 DLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYPAQ---- 140 (343)
T ss_pred ECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChhh----
Confidence 8853 136789999999999999999999999865432 23344556789999999999888888766
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|+
T Consensus 141 ----LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~ 215 (343)
T PRK11153 141 ----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVID 215 (343)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999875699999999996 68889999999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|++++.|+++++.
T Consensus 216 ~G~i~~~g~~~~~~ 229 (343)
T PRK11153 216 AGRLVEQGTVSEVF 229 (343)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999998774
No 48
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=8.5e-43 Score=370.58 Aligned_cols=208 Identities=23% Similarity=0.328 Sum_probs=187.2
Q ss_pred ccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----cc----
Q psy2519 29 VGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KF---- 100 (622)
Q Consensus 29 ~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----~~---- 100 (622)
+|++.+++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.. .+
T Consensus 3 ~~~~~~l~~vs~~i-----~~Gei~~l~G~s-----GsGKSTLLr~L~Gl~~p---~~G~I~i~G~~i~~~~~~~~~~~r 69 (363)
T TIGR01186 3 TGGKKGVNDADLAI-----AKGEIFVIMGLS-----GSGKSTTVRMLNRLIEP---TAGQIFIDGENIMKQSPVELREVR 69 (363)
T ss_pred cCCceeEEeeEEEE-----cCCCEEEEECCC-----CChHHHHHHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHH
Confidence 47788999999999 678888888776 89999999999999999 59999999999864 23
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHH
Q psy2519 101 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180 (622)
Q Consensus 101 r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRv 180 (622)
++.+|||+|++.++|++||+||+.|...... .++++..+++.++++.+||++..++++.+ |||||||||
T Consensus 70 r~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~---~~~~~~~~~~~~~l~~vgL~~~~~~~p~~--------LSGGq~QRV 138 (363)
T TIGR01186 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLG---WPEQERKEKALELLKLVGLEEYEHRYPDE--------LSGGMQQRV 138 (363)
T ss_pred hCcEEEEECCCcCCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCchhhhCChhh--------CCHHHHHHH
Confidence 6789999999999999999999999876542 34455677899999999999888888766 999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHH
Q psy2519 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
+|||||+.+|++|||||||++||+.++.++.+.+++++++.|+|||++|||+ +++.++||||++|++|+++..|+++++
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999999875699999999996 688899999999999999999999987
Q ss_pred H
Q psy2519 261 L 261 (622)
Q Consensus 261 ~ 261 (622)
.
T Consensus 218 ~ 218 (363)
T TIGR01186 218 L 218 (363)
T ss_pred H
Confidence 5
No 49
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-43 Score=341.68 Aligned_cols=221 Identities=21% Similarity=0.369 Sum_probs=207.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++ ||+..+++|+|+++ .+|+.+.++|+| ||||||++|+|.|+++| ++|+|.++|.++
T Consensus 2 ~L~ie~vtK~--Fg~k~av~~isf~v-----~~G~i~GllG~N-----GAGKTTtfRmILglle~---~~G~I~~~g~~~ 66 (300)
T COG4152 2 ALEIEGVTKS--FGDKKAVDNISFEV-----PPGEIFGLLGPN-----GAGKTTTFRMILGLLEP---TEGEITWNGGPL 66 (300)
T ss_pred ceEEecchhc--cCceeeecceeeee-----cCCeEEEeecCC-----CCCccchHHHHhccCCc---cCceEEEcCcch
Confidence 4689999998 59999999999999 688888888888 79999999999999999 599999999999
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
+...+.+|||+|.+..|+|.+||.|.|.|.++++. +++++.+++++.+|+++++.....++|.+ ||.|+
T Consensus 67 ~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kIk~--------LSKGn 135 (300)
T COG4152 67 SQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKIKE--------LSKGN 135 (300)
T ss_pred hhhhhhhcccChhhhccCccCcHHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchHHH--------hhhhh
Confidence 98888999999999999999999999999999975 67788889999999999999999999888 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecC
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
+|++.+-.+++++|++++||||+|||||.+.+.+-+.+.++++ +|.|||+++|.+ +.++++||++++|++|+.|.+|+
T Consensus 136 qQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 136 QQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecchH-HHHHHHhhhhheecCCceEEecc
Confidence 9999999999999999999999999999999999999999998 799999999996 79999999999999999999999
Q ss_pred hHHHHHHHH
Q psy2519 257 KDAALAFLE 265 (622)
Q Consensus 257 ~~~~~~~~~ 265 (622)
.+++.+-+.
T Consensus 214 v~~ir~~~G 222 (300)
T COG4152 214 VEDIRRSFG 222 (300)
T ss_pred HHHHHHhcC
Confidence 999886443
No 50
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-43 Score=347.05 Aligned_cols=211 Identities=27% Similarity=0.369 Sum_probs=183.6
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~ 65 (213)
T cd03259 1 LELKGLSKTY--GSVRALDDLSLTV-----EPGEFLALLGPS-----GCGKTTLLRLIAGLERP---DSGEILIDGRDVT 65 (213)
T ss_pred CeeeeeEEEe--CCeeeecceeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCEEcC
Confidence 3678999986 5577999999999 677788888777 89999999999999998 5899999999875
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.++|++|++.+++.+||+||+.+...... ....+..++++++++.++|.+..++.+.+ ||||
T Consensus 66 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSgG 134 (213)
T cd03259 66 GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYPHE--------LSGG 134 (213)
T ss_pred cCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcChhh--------CCHH
Confidence 4 245789999999999999999999998754321 12333456788999999999888888766 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|++++.|
T Consensus 135 ~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 135 QQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999875589999999996 6788999999999999998765
No 51
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=7.2e-43 Score=347.89 Aligned_cols=209 Identities=23% Similarity=0.332 Sum_probs=181.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|..++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 67 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHI-----TKGEMVFLVGHS-----GAGKSTFLKLILGIEKP---TRGKIRFNGQDL 67 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEeh
Confidence 36789999997433357999999999 678888888887 89999999999999998 589999999987
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
.. ..++.++|++|++.+++.+||.||+.+...... ....+..++++++++.+||.+..++.+++
T Consensus 68 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------ 138 (216)
T TIGR00960 68 TRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALPMQ------ 138 (216)
T ss_pred hhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh------
Confidence 42 146789999999999999999999998765432 12334456788999999999888888666
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ +++.++||++++|++|
T Consensus 139 --LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 139 --LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTLSRG 214 (216)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999987 589999999996 6788899999999999
Q ss_pred ce
Q psy2519 250 RT 251 (622)
Q Consensus 250 ~i 251 (622)
++
T Consensus 215 ~i 216 (216)
T TIGR00960 215 RL 216 (216)
T ss_pred cC
Confidence 75
No 52
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=360.70 Aligned_cols=238 Identities=21% Similarity=0.264 Sum_probs=199.7
Q ss_pred CcccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
+++++||+++|..++ +++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i-----~~Ge~v~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g 67 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEV-----KKGSYTALIGHT-----GSGKSTLLQHLNGLLQP---TEGKVTVGD 67 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEE-----cCCCEEEEECCC-----CChHHHHHHHHhcCCCC---CCcEEEECC
Confidence 467899999984332 35999999999 678888888887 89999999999999998 589999999
Q ss_pred EecCc--------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccC
Q psy2519 94 KPVEG--------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIG 162 (622)
Q Consensus 94 ~~~~~--------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~ 162 (622)
+++.. ..++.+|||+|++ .+++ .||.||+.|+..... .++.+.++++.++++.+||. +..++.+.
T Consensus 68 ~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (288)
T PRK13643 68 IVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFG---IPKEKAEKIAAEKLEMVGLADEFWEKSPF 143 (288)
T ss_pred EECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCChhhccCCcc
Confidence 98741 2578899999986 4555 699999999865432 23455567889999999996 46677766
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++|||
T Consensus 144 ~--------LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dr 213 (288)
T PRK13643 144 E--------LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADY 213 (288)
T ss_pred c--------CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCE
Confidence 5 999999999999999999999999999999999999999999999987 699999999996 678889999
Q ss_pred eeeecCCceEEecChHHHH---HHHHhCCCCCCCCCChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL---AFLESQGYPCPYGYNPADFL 281 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~---~~~~~~g~~~p~~~n~~d~~ 281 (622)
|++|++|++++.|+++++. +.+...|+.+|.....++.+
T Consensus 214 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 214 VYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999875 34556777777655555444
No 53
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-42 Score=357.05 Aligned_cols=231 Identities=19% Similarity=0.302 Sum_probs=193.7
Q ss_pred cccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||++.|..++ .++++++|+++ .+|+.+.++|+| |||||||+++|+|+++| .+|+|.++|+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GaGKSTLl~~l~Gl~~p---~~G~i~~~g~ 69 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEI-----EDGEFVGLIGHT-----GSGKSTLIQHLNGLLKP---TSGKIIIDGV 69 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CccEEEECCE
Confidence 67899999984322 47999999999 678888888887 89999999999999999 5999999999
Q ss_pred ecCc------cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC--cccCCccCCcC
Q psy2519 95 PVEG------KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM--NSQHTRIGSSS 165 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~v~~~~ 165 (622)
++.. ..++.+|||||++. .+...||+||+.|+..... .++++..++++++++.+||. +..++.+..
T Consensus 70 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~-- 144 (287)
T PRK13637 70 DITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG---LSEEEIENRVKRAMNIVGLDYEDYKDKSPFE-- 144 (287)
T ss_pred ECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCC---CCHHHHHHHHHHHHHHcCCCchhhccCCccc--
Confidence 9853 35678999999863 3345799999998764432 24455667789999999997 567777666
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||++|||||+.+|++|||||||+|||+.++.++.++|++++++.|+|||++||++ +++.++|||+++
T Consensus 145 ------LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~ 217 (287)
T PRK13637 145 ------LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIV 217 (287)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999875599999999996 678889999999
Q ss_pred ecCCceEEecChHHHHH---HHHhCCCCCCC
Q psy2519 246 LADSRTAFIGSKDAALA---FLESQGYPCPY 273 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~~---~~~~~g~~~p~ 273 (622)
|++|++++.|+++++.+ .+...|+..|.
T Consensus 218 l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 218 MNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 99999999999998753 23344555443
No 54
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.5e-42 Score=362.77 Aligned_cols=208 Identities=27% Similarity=0.320 Sum_probs=185.8
Q ss_pred ccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc---cccccEE
Q psy2519 29 VGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG---KFRSACG 105 (622)
Q Consensus 29 ~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~---~~r~~ig 105 (622)
+|+.++++++|+++ .+|+.+.++|+| |||||||+|+|+|+++| .+|+|.++|+++.. ..++.+|
T Consensus 3 y~~~~~l~~vs~~i-----~~Ge~~~l~G~N-----GaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~ 69 (302)
T TIGR01188 3 YGDFKAVDGVNFKV-----REGEVFGFLGPN-----GAGKTTTIRMLTTLLRP---TSGTARVAGYDVVREPRKVRRSIG 69 (302)
T ss_pred eCCeeEEeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEcccCHHHHHhhcE
Confidence 36778999999999 678888888887 89999999999999998 58999999998754 3567899
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 106 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 106 yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
|++|++.+++.+||+||+.+.+..+. .+..+..++++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 70 ~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSgG~~qrv~la~a 138 (302)
T TIGR01188 70 IVPQYASVDEDLTGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVGT--------YSGGMRRRLDIAAS 138 (302)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchhh--------CCHHHHHHHHHHHH
Confidence 99999999999999999999776542 23344456789999999999888998777 99999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHH
Q psy2519 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 186 L~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 262 (622)
|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|++++.|+++++.+
T Consensus 139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999999987 599999999996 68999999999999999999999998754
No 55
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-42 Score=350.65 Aligned_cols=220 Identities=25% Similarity=0.332 Sum_probs=189.4
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 3 l~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRF--GDFVALDDVSLDI-----PSGELVALLGPS-----GSGKTTLLRLIAGLERP---DSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEE--CCEEeeeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence 5789999997 5577999999999 678888888887 89999999999999998 5899999999875
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.++||+|++.+++.+||+||+.+....... ......+..++++++++.+||.+..++.+.+ |||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 139 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQ--------LSG 139 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhh--------CCH
Confidence 4 2356899999999999999999999987543211 0012233445688999999998888888766 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.||++++|++|++++.
T Consensus 140 G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 140 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999874589999999996 678889999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 219 ~~~~~~~ 225 (239)
T cd03296 219 GTPDEVY 225 (239)
T ss_pred cCHHHHh
Confidence 9988653
No 56
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-43 Score=326.75 Aligned_cols=218 Identities=23% Similarity=0.337 Sum_probs=193.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|+.|.| |+..+|++|||+. .+|..+.|||. |||||||+||||.=+.+| ..|+|.+||+.+
T Consensus 6 ~l~v~dlHK~~--G~~eVLKGvSL~A-----~~GdVisIIGs-----SGSGKSTfLRCiN~LE~P---~~G~I~v~geei 70 (256)
T COG4598 6 ALEVEDLHKRY--GEHEVLKGVSLQA-----NAGDVISIIGS-----SGSGKSTFLRCINFLEKP---SAGSIRVNGEEI 70 (256)
T ss_pred ceehhHHHhhc--ccchhhcceeeec-----CCCCEEEEecC-----CCCchhHHHHHHHhhcCC---CCceEEECCeEE
Confidence 57889999985 9999999999998 56666677655 589999999999999999 489999999987
Q ss_pred Cc-----------------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCC
Q psy2519 97 EG-----------------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 159 (622)
Q Consensus 97 ~~-----------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 159 (622)
.- .+|.+.|+|||+.+|+++|||.||+.-+...-+ ..++.+..++++.+|+++|+.+..|.
T Consensus 71 ~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~ 148 (256)
T COG4598 71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA 148 (256)
T ss_pred EeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc
Confidence 31 257789999999999999999999987653322 24677888999999999999999998
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~ 239 (622)
++.. |||||+||++|||||+.+|+++++|||||+|||.-.-++++.+++||+ +|+|.+++||.+ ..+.+.
T Consensus 149 YP~~--------LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTHEM-~FAR~V 218 (256)
T COG4598 149 YPAH--------LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHEM-GFARDV 218 (256)
T ss_pred Cccc--------cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEeeeh-hHHHhh
Confidence 8555 999999999999999999999999999999999999999999999998 799999999996 688899
Q ss_pred ccceeeecCCceEEecChHHHH
Q psy2519 240 FDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
..+|++|++|.|-.+|+|++++
T Consensus 219 ss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 219 SSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred hhheEEeecceecccCChHHHh
Confidence 9999999999999999999875
No 57
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.5e-42 Score=348.54 Aligned_cols=219 Identities=26% Similarity=0.348 Sum_probs=188.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 65 (236)
T cd03219 1 LEVRGLTKRF--GGLVALDDVSFSV-----RPGEIHGLIGPN-----GAGKTTLFNLISGFLRP---TSGSVLFDGEDIT 65 (236)
T ss_pred CeeeeeEEEE--CCEEEecCceEEe-----cCCcEEEEECCC-----CCCHHHHHHHHcCCCCC---CCceEEECCEECC
Confidence 3678999986 5677999999999 677788888777 89999999999999998 5899999999875
Q ss_pred c----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCcc-------ccHHHHHHHHHHHHHHhCCCcccCCccCCcC
Q psy2519 98 G----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR-------VKAYQRIALINSLLIELGLMNSQHTRIGSSS 165 (622)
Q Consensus 98 ~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~ 165 (622)
. . .++.++|++|++.+++.+||+||+.+......... ....+..++++++++.+||.+..++.+.+
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (236)
T cd03219 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGE-- 143 (236)
T ss_pred CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhh--
Confidence 4 1 24679999999999999999999998764332110 01233456788999999999888888766
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++
T Consensus 144 ------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~ 215 (236)
T cd03219 144 ------LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDM-DVVMSLADRVTV 215 (236)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 688899999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|+++..|+++++.
T Consensus 216 l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 216 LDQGRVIAEGTPDEVR 231 (236)
T ss_pred EeCCEEEeecCHHHhc
Confidence 9999999999988763
No 58
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.9e-42 Score=361.84 Aligned_cols=216 Identities=23% Similarity=0.326 Sum_probs=193.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| |+..+++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 3 l~~~~l~~~~--~~~~~l~~is~~i-----~~Gei~~l~G~N-----GaGKTTLl~~l~Gl~~~---~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLY--GTQNALDEVSFEA-----QKGRIVGFLGPN-----GAGKSTTMKIITGYLPP---DSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEE--CCEEEEEEeEEEE-----eCCeEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 6789999996 6788999999999 678888888887 79999999999999998 5899999999885
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.+||++|++.+++.+||.||+.+.+.++. .+.++..++++++++.+||.+..++.+++ |||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------LS~ 136 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIGQ--------LSK 136 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchhh--------CCH
Confidence 4 357889999999999999999999998876543 23344456788999999999989998777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++|||+++|++|++++.
T Consensus 137 G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~ 213 (301)
T TIGR03522 137 GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIM-QEVEAICDRVIIINKGKIVAD 213 (301)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999963 69999999996 689999999999999999999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++++..
T Consensus 214 g~~~~~~~ 221 (301)
T TIGR03522 214 KKLDELSA 221 (301)
T ss_pred CCHHHHHH
Confidence 99998754
No 59
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.3e-43 Score=320.71 Aligned_cols=211 Identities=24% Similarity=0.330 Sum_probs=188.5
Q ss_pred CcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.+++++++++...+ +.++|++|+|.+ ++|+.+.|+|++ ||||||||-+++|+..| .+|+|.+.|+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v-----~~Ge~vaiVG~S-----GSGKSTLl~vlAGLd~~---ssGeV~l~G~ 72 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVV-----KRGETVAIVGPS-----GSGKSTLLAVLAGLDDP---SSGEVRLLGQ 72 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEe-----cCCceEEEEcCC-----CCcHHhHHHHHhcCCCC---CCceEEEcCc
Confidence 56899999987544 478999999999 788888888764 89999999999999999 5999999999
Q ss_pred ecCc-------c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 95 PVEG-------K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~-------~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
++.+ . ..+++|||||...|.|+||..||++.++.++.. +..+.+..+.++|+.+||.+..+.+++.
T Consensus 73 ~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~q--- 146 (228)
T COG4181 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPAQ--- 146 (228)
T ss_pred chhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCccc---
Confidence 9864 1 458899999999999999999999999988763 2233456678999999999999988555
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+||||++..|++||.||||.+||..+..+|.+++-.++++.|+|.|+||||| .+...|||.+-|
T Consensus 147 -----LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~ 219 (228)
T COG4181 147 -----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRL 219 (228)
T ss_pred -----cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeee
Confidence 9999999999999999999999999999999999999999999999998999999999997 677899999999
Q ss_pred cCCceEE
Q psy2519 247 ADSRTAF 253 (622)
Q Consensus 247 ~~G~iv~ 253 (622)
.+|+++.
T Consensus 220 ~~G~l~~ 226 (228)
T COG4181 220 RSGRLVE 226 (228)
T ss_pred ecceecc
Confidence 9999975
No 60
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.7e-42 Score=342.88 Aligned_cols=211 Identities=22% Similarity=0.328 Sum_probs=184.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRF--GNVTALDDLNLDI-----ADGEFVVLLGPS-----GCGKTTTLRMIAGLEEP---TSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEE--CCeeeeeceEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence 3678999986 5568999999999 677788888777 89999999999999998 5899999999875
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.++|++|++.+++.+||+||+.+...... ...++.+++++++++.+|+.+..++.+++ ||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 134 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKPKQ--------LSGG 134 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCChhh--------CCHH
Confidence 4 235679999999999999999999998754432 22344456788999999999888888776 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|++++.|
T Consensus 135 ~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 135 QRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999875589999999996 6888899999999999999876
No 61
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-42 Score=344.20 Aligned_cols=215 Identities=27% Similarity=0.351 Sum_probs=185.0
Q ss_pred cccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++|++++|..++ .++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~ 67 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSV-----EEGEFVALVGPS-----GCGKSTLLRIIAGLERP---TSGEVLVDGEP 67 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEE
Confidence 36789999873211 67999999999 677788888887 89999999999999988 58999999998
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
+.. .++.++||+|++.+++.+||+||+.+....+. ....+..++++++++.+||.+..++.+.+ ||||
T Consensus 68 ~~~-~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSgG 135 (220)
T cd03293 68 VTG-PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYPHQ--------LSGG 135 (220)
T ss_pred Ccc-ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCccc--------CCHH
Confidence 753 46789999999999999999999998764432 12233456788999999998888888766 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec--CCceEE
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAF 253 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~--~G~iv~ 253 (622)
||||++|||||+.+|+++||||||+|||+.++.++.+.|++++++.|+|||++||++ +++.++||++++|+ +|+++.
T Consensus 136 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 136 MRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEE
Confidence 999999999999999999999999999999999999999999765689999999996 57888999999999 799998
Q ss_pred ecChH
Q psy2519 254 IGSKD 258 (622)
Q Consensus 254 ~G~~~ 258 (622)
.++.+
T Consensus 215 ~~~~~ 219 (220)
T cd03293 215 EVEVD 219 (220)
T ss_pred EEEec
Confidence 87653
No 62
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-42 Score=347.05 Aligned_cols=218 Identities=23% Similarity=0.311 Sum_probs=189.5
Q ss_pred CcccCCccccccccce----eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 17 NEEVPNVDFSEIVGSV----QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~----~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+++++||++.| ++. ++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++
T Consensus 1 ~i~~~~l~~~~--~~~~~~~~il~~~s~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~ 65 (233)
T cd03258 1 MIELKNVSKVF--GDTGGKVTALKDVSLSV-----PKGEIFGIIGRS-----GAGKSTLIRCINGLERP---TSGSVLVD 65 (233)
T ss_pred CeEEecceEEc--cCCCCceeeeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEEC
Confidence 35789999997 443 7999999999 678888888877 89999999999999998 58999999
Q ss_pred CEecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcC
Q psy2519 93 GKPVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 165 (622)
Q Consensus 93 G~~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~ 165 (622)
|+++.. ..++.++|++|++.+++.+|++||+.+....+. ....+..+.++++++.++|.+..++.+.+
T Consensus 66 g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (233)
T cd03258 66 GTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYPAQ-- 140 (233)
T ss_pred CEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcChhh--
Confidence 998753 136789999999999999999999998754432 22333456788999999999888888666
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++
T Consensus 141 ------LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~ 213 (233)
T cd03258 141 ------LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAV 213 (233)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999874589999999996 678889999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+++++.
T Consensus 214 l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 214 MEKGEVVEEGTVEEVF 229 (233)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999887653
No 63
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-42 Score=358.01 Aligned_cols=230 Identities=20% Similarity=0.256 Sum_probs=192.6
Q ss_pred cccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||+++|..+ ..++|+++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~ 69 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSI-----PSGSYVAIIGHT-----GSGKSTLLQHLNGLLQP---TSGTVTIGER 69 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CCcEEEECCE
Confidence 5789999998432 256999999999 678888888777 89999999999999998 5899999999
Q ss_pred ecCc--------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCC
Q psy2519 95 PVEG--------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~--------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~ 163 (622)
++.. ..++.+|||+|++ .++ ..||.||+.|+..... .+..+.+++++++++.+||. +..++.+.+
T Consensus 70 ~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 145 (290)
T PRK13634 70 VITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFG---VSEEDAKQKAREMIELVGLPEELLARSPFE 145 (290)
T ss_pred ECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCChhhhhCCccc
Confidence 8741 3567899999986 355 4699999998764332 23344556789999999997 567887666
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.++|++++++.|.|||++||++ +++.++|||+
T Consensus 146 --------LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv 216 (290)
T PRK13634 146 --------LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQI 216 (290)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 9999999999999999999999999999999999999999999999875699999999996 6888999999
Q ss_pred eeecCCceEEecChHHHH---HHHHhCCCCCCC
Q psy2519 244 ILLADSRTAFIGSKDAAL---AFLESQGYPCPY 273 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~---~~~~~~g~~~p~ 273 (622)
++|++|++++.|+++++. ..+...+...|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 999999999999998874 234444555443
No 64
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-42 Score=353.86 Aligned_cols=231 Identities=20% Similarity=0.261 Sum_probs=195.1
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+++++||+++|..+ ..++|+++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~ 70 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHV-----KQGEWLSIIGHN-----GSGKSTTVRLIDGLLEA---ESGQIIIDGDL 70 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEE
Confidence 57899999998432 246999999999 677788888777 89999999999999998 59999999999
Q ss_pred cCc----cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 96 VEG----KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
+.. ..++.+|||+|++ .+++.+||+||+.|+..... .++++..++++++++.+||.+..++.+.+
T Consensus 71 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~------- 140 (279)
T PRK13650 71 LTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG---IPHEEMKERVNEALELVGMQDFKEREPAR------- 140 (279)
T ss_pred CCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC---CCHHHHHHHHHHHHHHCCCHhHhhCCccc-------
Confidence 854 3567899999997 47788899999998754321 23445566789999999999888888766
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|++++++.|+|||++||++ +++ ..|||+++|++|+
T Consensus 141 -LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~ 217 (279)
T PRK13650 141 -LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQ 217 (279)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999875599999999996 566 5899999999999
Q ss_pred eEEecChHHHHH---HHHhCCCCCCC
Q psy2519 251 TAFIGSKDAALA---FLESQGYPCPY 273 (622)
Q Consensus 251 iv~~G~~~~~~~---~~~~~g~~~p~ 273 (622)
++..|+++++.. .+...++..|.
T Consensus 218 i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 218 VESTSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred EEEECCHHHHHcChHHHHHcCCCCcH
Confidence 999999987652 34445555443
No 65
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.5e-42 Score=362.45 Aligned_cols=222 Identities=18% Similarity=0.310 Sum_probs=191.3
Q ss_pred CcccCCccccccc-----------cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCce
Q psy2519 17 NEEVPNVDFSEIV-----------GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCII 85 (622)
Q Consensus 17 ~~~~~~~~~~~~~-----------g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~ 85 (622)
.++++||+++|.. +..++++++|+++ ++|+.+.++|+| |||||||+++|+|+++| .
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~lvG~s-----GsGKSTLlk~i~Gl~~p---~ 74 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRL-----YEGETLGVVGES-----GCGKSTFARAIIGLVKA---T 74 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHCCCCC---C
Confidence 4789999999853 1367999999999 677788888776 89999999999999998 4
Q ss_pred eeEEEECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-c
Q psy2519 86 DGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-N 155 (622)
Q Consensus 86 ~G~I~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~ 155 (622)
+|+|.++|+++.. .+++.++||+|++ .++|.+||.||+.+......+ ..++++.++++.++++.+||. +
T Consensus 75 ~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~ 153 (331)
T PRK15079 75 DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPN 153 (331)
T ss_pred CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChH
Confidence 8999999999853 2467899999997 689999999999987544311 124455667888999999994 4
Q ss_pred ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHH
Q psy2519 156 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 235 (622)
Q Consensus 156 ~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~ 235 (622)
..++++.+ |||||||||+|||||+.+|++||+||||+|||+.++.++.++|++++++.|.|+|++|||+ ..
T Consensus 154 ~~~~~p~~--------LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~ 224 (331)
T PRK15079 154 LINRYPHE--------FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AV 224 (331)
T ss_pred HhcCCccc--------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HH
Confidence 66777555 9999999999999999999999999999999999999999999999875699999999996 68
Q ss_pred HHhhccceeeecCCceEEecChHHHH
Q psy2519 236 LIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 236 i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
+.++||||++|.+|++++.|+++++.
T Consensus 225 ~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 225 VKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 88899999999999999999998775
No 66
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.5e-42 Score=345.84 Aligned_cols=216 Identities=24% Similarity=0.336 Sum_probs=188.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRY--GKRKVVNGVSLSV-----KQGEIVGLLGPN-----GAGKTTTFYMIVGLVKP---DSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEe--CCEEeeccceeEe-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEecc
Confidence 3688999987 5667999999999 677788888887 89999999999999998 5899999999875
Q ss_pred c----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 98 G----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 98 ~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
. . .++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+++.+..++.+.+ |
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------L 134 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKASS--------L 134 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh--------C
Confidence 3 1 34679999999999999999999998754332 12333455788999999999888888766 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|+++
T Consensus 135 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 135 SGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNV-RETLSITDRAYIIYEGKVL 212 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999999999987 689999999996 6889999999999999999
Q ss_pred EecChHHHH
Q psy2519 253 FIGSKDAAL 261 (622)
Q Consensus 253 ~~G~~~~~~ 261 (622)
..|+++++.
T Consensus 213 ~~~~~~~~~ 221 (232)
T cd03218 213 AEGTPEEIA 221 (232)
T ss_pred EEeCHHHhh
Confidence 999988653
No 67
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.9e-42 Score=343.51 Aligned_cols=216 Identities=27% Similarity=0.376 Sum_probs=187.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.|..++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNV-----YKGEIFGLLGHN-----GAGKTTTLKMLTGELRP---TSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEecc
Confidence 3678999987433377999999999 677788888887 89999999999999998 5999999999875
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.+|||+|++.+++.+||+||+.+...... .+..+..++++++++.++|.+..++.+++ |||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 136 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRART--------LSG 136 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChhhh--------CCH
Confidence 4 356789999999999999999999998765432 12333456788999999998888888766 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +.+.+.||++++|++|+++..
T Consensus 137 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 137 GMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999999975 48999999997 578889999999999999999
Q ss_pred cChHHH
Q psy2519 255 GSKDAA 260 (622)
Q Consensus 255 G~~~~~ 260 (622)
|+++++
T Consensus 214 ~~~~~~ 219 (220)
T cd03263 214 GSPQEL 219 (220)
T ss_pred CCHHHc
Confidence 988754
No 68
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.2e-42 Score=343.65 Aligned_cols=210 Identities=27% Similarity=0.340 Sum_probs=184.1
Q ss_pred cccCCccccccccce----eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 18 EEVPNVDFSEIVGSV----QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~----~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
++++||++.| ++. ++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|
T Consensus 2 l~~~~v~~~~--~~~~~~~~il~~~sl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g 66 (218)
T cd03266 2 ITADALTKRF--RDVKKTVQAVDGVSFTV-----KPGEVTGLLGPN-----GAGKTTTLRMLAGLLEP---DAGFATVDG 66 (218)
T ss_pred eEEEEEEEec--CCCCccceeecceEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCcCC---CCceEEECC
Confidence 5789999997 333 7999999999 677788888777 89999999999999998 589999999
Q ss_pred EecCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 94 KPVEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 94 ~~~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
+++.. .+++.+||++|++.+++.+||+||+.+....+. ....+..++++++++.+||.+..++.+++
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 136 (218)
T cd03266 67 FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRVGG------- 136 (218)
T ss_pred EEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhhhh-------
Confidence 98754 356789999999999999999999998755432 22344556788999999999888888777
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.+++|++++|++|+
T Consensus 137 -LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 213 (218)
T cd03266 137 -FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGR 213 (218)
T ss_pred -cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999976 699999999996 68889999999999999
Q ss_pred eEEec
Q psy2519 251 TAFIG 255 (622)
Q Consensus 251 iv~~G 255 (622)
+++.|
T Consensus 214 i~~~~ 218 (218)
T cd03266 214 VVYEG 218 (218)
T ss_pred EeecC
Confidence 98754
No 69
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.3e-42 Score=370.42 Aligned_cols=220 Identities=24% Similarity=0.280 Sum_probs=192.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |++++++++|+++ ++|+.+.++|+| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 3 ~L~~~nls~~y--~~~~vL~~vs~~i-----~~Geiv~liGpN-----GaGKSTLLk~LaGll~p---~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEF--GDTTVLDGVDLSV-----REGSLVGLVGPN-----GAGKTTLLRAINGTLTP---TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEE--CCEEEEEeeEEEE-----CCCCEEEEECCC-----CchHHHHHHHHhcCCCC---CCcEEEECCEEc
Confidence 57889999986 6788999999999 678888888887 79999999999999999 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-cccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ++++++|||+|++.+++.+||+||+.++...+... .....+.+++++++++.+||.+..++.+.+
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~-------- 139 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTS-------- 139 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhh--------
Confidence 54 36788999999999999999999999864321100 001123456789999999999988988777
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+++|++|||||||+|||+.++.+++++|+++++ +|+|||+++|++ +++.++|||+++|++|++
T Consensus 140 LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl-~~~~~~adrii~l~~G~i 217 (402)
T PRK09536 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDL-DLAARYCDELVLLADGRV 217 (402)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 689999999996 788899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 218 v~~G~~~ev~ 227 (402)
T PRK09536 218 RAAGPPADVL 227 (402)
T ss_pred EEecCHHHHh
Confidence 9999999753
No 70
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-42 Score=340.68 Aligned_cols=210 Identities=28% Similarity=0.431 Sum_probs=183.9
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~v~~~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRF--GRVTALDDISFSV-----EKGEIFGLLGPN-----GAGKTTTIRMILGIILP---DSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEE--CCEEEEeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCCchh
Confidence 3678999986 5678999999999 677778888777 89999999999999988 5999999999876
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
...++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+|+.+..++.+.+ ||||||
T Consensus 66 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G~~ 134 (210)
T cd03269 66 IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRVEE--------LSKGNQ 134 (210)
T ss_pred HHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcHhh--------CCHHHH
Confidence 5556789999999999999999999998765432 12334456788999999998888887666 999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|.|||++||++ +++.++||++++|++|++++.|
T Consensus 135 qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 135 QKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999999987 589999999996 6788899999999999998764
No 71
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-42 Score=346.81 Aligned_cols=220 Identities=22% Similarity=0.326 Sum_probs=186.7
Q ss_pred cccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 18 EEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 18 ~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++++||+++| ++ .++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 1 l~~~~l~~~~--~~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 65 (241)
T cd03256 1 IEVENLSKTY--PNGKKALKDVSLSI-----NPGEFVALIGPS-----GAGKSTLLRCLNGLVEP---TSGSVLIDGTDI 65 (241)
T ss_pred CEEeeEEEec--CCccEEEecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCcCC---CCceEEECCEec
Confidence 3578999987 44 67999999999 677888888777 89999999999999988 589999999987
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC-----CccccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL-----DRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
.. ..++.++|++|++.+++.+||+||+.+...... .......+..++++++++.++|.+..++.+.+
T Consensus 66 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 144 (241)
T cd03256 66 NKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQ- 144 (241)
T ss_pred cccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCccc-
Confidence 53 246789999999999999999999987542110 00011123345688999999998888887666
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||+++
T Consensus 145 -------LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~ 216 (241)
T cd03256 145 -------LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIV 216 (241)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999999875689999999996 68888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 217 GLKDGRIVFDGPPAELT 233 (241)
T ss_pred EEECCEEEeecCHHHhh
Confidence 99999999999988753
No 72
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8e-42 Score=351.69 Aligned_cols=219 Identities=21% Similarity=0.348 Sum_probs=189.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 7 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTR--GNRCIFDNISLTV-----PRGKITAIMGPS-----GIGKTTLLRLIGGQIAP---DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEc
Confidence 46899999986 6678999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
.. ..++.++|++|+..+++.+||.||+.+....... .+..+..+++.++++.+||.+..++.+++
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------ 143 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ--LPAPLLHSTVMMKLEAVGLRGAAKLMPSE------ 143 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHcCChhhhhCChhh------
Confidence 53 1356799999999999999999999886432211 12333455678899999999888888776
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|
T Consensus 144 --LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G 220 (269)
T PRK11831 144 --LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADK 220 (269)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999875589999999996 6888999999999999
Q ss_pred ceEEecChHHHH
Q psy2519 250 RTAFIGSKDAAL 261 (622)
Q Consensus 250 ~iv~~G~~~~~~ 261 (622)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (269)
T PRK11831 221 KIVAHGSAQALQ 232 (269)
T ss_pred EEEEeCCHHHHh
Confidence 999999988664
No 73
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-42 Score=345.86 Aligned_cols=217 Identities=24% Similarity=0.332 Sum_probs=188.2
Q ss_pred cccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 18 EEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 18 ~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++++||+++| ++ .++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 1 l~~~~l~~~~--~~~~~~l~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 65 (242)
T cd03295 1 IEFENVTKRY--GGGKKAVNNLNLEI-----AKGEFLVLIGPS-----GSGKTTTMKMINRLIEP---TSGEIFIDGEDI 65 (242)
T ss_pred CEEEEEEEEe--CCcceEeeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCeEc
Confidence 3678999986 44 67999999999 678888888777 89999999999999998 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc--ccCCccCCcCCCCcc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN--SQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~~~~~~~~ 170 (622)
.. ..++.++|++|++.+++.+||+||+.+...... ....+..+++.++++.+||.+ ..++.+.+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~------- 135 (242)
T cd03295 66 REQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRYPHE------- 135 (242)
T ss_pred CcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcChhh-------
Confidence 53 356789999999999999999999998755432 223344567889999999985 67777666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+++|++++|++|+
T Consensus 136 -LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~ 213 (242)
T cd03295 136 -LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGE 213 (242)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999874589999999996 67889999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 214 i~~~~~~~~~~ 224 (242)
T cd03295 214 IVQVGTPDEIL 224 (242)
T ss_pred EEEecCHHHHH
Confidence 99999987653
No 74
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-42 Score=357.32 Aligned_cols=231 Identities=19% Similarity=0.221 Sum_probs=192.6
Q ss_pred cccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||+++|..++ .++++++|+++ .+|+.++++|+| |||||||+++|+|+++| .+|+|.++|+
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i-----~~Ge~v~iiG~n-----GsGKSTLl~~L~Gl~~p---~~G~i~~~g~ 69 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEI-----NQGEFIAIIGQT-----GSGKTTFIEHLNALLLP---DTGTIEWIFK 69 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEE-----eCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CCcEEEEece
Confidence 67899999984322 36899999999 678888888887 89999999999999998 4899999987
Q ss_pred ecC----------------------------ccccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHH
Q psy2519 95 PVE----------------------------GKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145 (622)
Q Consensus 95 ~~~----------------------------~~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~ 145 (622)
+.. ...++.+|||||++ ..+...||+||+.|+..... .++++..++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~---~~~~~~~~~~~ 146 (305)
T PRK13651 70 DEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMG---VSKEEAKKRAA 146 (305)
T ss_pred ecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcC---CCHHHHHHHHH
Confidence 641 13567899999985 33445799999998765432 34455567889
Q ss_pred HHHHHhCCC-cccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCE
Q psy2519 146 SLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224 (622)
Q Consensus 146 ~~l~~lgL~-~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~t 224 (622)
++++.+||. +..++.+.+ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|
T Consensus 147 ~~l~~~gL~~~~~~~~~~~--------LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~t 217 (305)
T PRK13651 147 KYIELVGLDESYLQRSPFE--------LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKT 217 (305)
T ss_pred HHHHHcCCChhhhhCChhh--------CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCE
Confidence 999999996 677888666 999999999999999999999999999999999999999999999986 6999
Q ss_pred EEEEeccCcHHHHhhccceeeecCCceEEecChHHHH---HHHHhCCCCCCCC
Q psy2519 225 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL---AFLESQGYPCPYG 274 (622)
Q Consensus 225 vi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~---~~~~~~g~~~p~~ 274 (622)
||++|||+ +.+.+.|||+++|++|++++.|+++++. +.+...+...|..
T Consensus 218 iiivtHd~-~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~ 269 (305)
T PRK13651 218 IILVTHDL-DNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPPKL 269 (305)
T ss_pred EEEEeeCH-HHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCChH
Confidence 99999996 6788999999999999999999999875 2334455554443
No 75
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4e-42 Score=348.62 Aligned_cols=221 Identities=24% Similarity=0.287 Sum_probs=186.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 1 ~l~~~~l~~~~~-~~~~il~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 66 (243)
T TIGR02315 1 MLEVENLSKVYP-NGKQALKNINLNI-----NPGEFVAIIGPS-----GAGKSTLLRCINRLVEP---SSGSILLEGTDI 66 (243)
T ss_pred CeEEEeeeeecC-CCcceeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCcCC---CccEEEECCEEh
Confidence 357899999873 2567999999999 677788888776 89999999999999998 589999999987
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC-----CccccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL-----DRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
.. .+++.+|||+|++.+++.+||+||+.++..... .......+.+++++++++.+||.+..++.+.+
T Consensus 67 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 145 (243)
T TIGR02315 67 TKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQ- 145 (243)
T ss_pred hhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCccc-
Confidence 53 146789999999999999999999987532100 00011223456788999999998888888666
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||+++
T Consensus 146 -------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~ 217 (243)
T TIGR02315 146 -------LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIV 217 (243)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEE
Confidence 9999999999999999999999999999999999999999999999875589999999996 67888999999
Q ss_pred eecCCceEEecChHHH
Q psy2519 245 LLADSRTAFIGSKDAA 260 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~ 260 (622)
+|++|++++.|+++++
T Consensus 218 ~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 218 GLKAGEIVFDGAPSEL 233 (243)
T ss_pred EEECCEEEecCCHHHh
Confidence 9999999999988764
No 76
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=351.09 Aligned_cols=217 Identities=23% Similarity=0.283 Sum_probs=187.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++|. ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~-~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK-DGTKALKGLSLSI-----PEGSKTALLGPN-----GAGKSTLLLHLNGIYLP---QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC-CCCeeeeeEEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 467999999873 3467999999999 678888888877 89999999999999998 589999999988
Q ss_pred Cc----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.+|||+|++. .++..||.||+.|+..... .++.+.+++++++++.+||.+..++.+.+
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-------- 138 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG---LDKDEVERRVEEALKAVRMWDFRDKPPYH-------- 138 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC---CCHHHHHHHHHHHHHHCCCHHHhcCChhh--------
Confidence 53 34678999999863 4556899999998754321 23344456788999999999888888766
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++||++ +++.++|||+++|++|++
T Consensus 139 LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~-~~~~~~~d~i~~l~~G~i 216 (274)
T PRK13647 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDV-DLAAEWADQVIVLKEGRV 216 (274)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 599999999996 678889999999999999
Q ss_pred EEecChHHH
Q psy2519 252 AFIGSKDAA 260 (622)
Q Consensus 252 v~~G~~~~~ 260 (622)
++.|+++++
T Consensus 217 ~~~g~~~~~ 225 (274)
T PRK13647 217 LAEGDKSLL 225 (274)
T ss_pred EEECCHHHh
Confidence 999998754
No 77
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=350.16 Aligned_cols=219 Identities=21% Similarity=0.260 Sum_probs=189.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||++.|..++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GaGKSTLl~~i~G~~~p---~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSV-----YEGEWVAIVGHN-----GSGKSTLAKLLNGLLLP---EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence 47899999997433467999999999 677788888777 89999999999999999 599999999998
Q ss_pred Cc----cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.+||++|++ .+++..||.||+.+...... ...++..++++++++.+||.+..++.+++
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-------- 140 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG---VPREEMVERVDQALRQVGMEDFLNREPHR-------- 140 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC---CCHHHHHHHHHHHHHHcCChhhhhCCccc--------
Confidence 64 3567899999997 47778899999998754432 23344566789999999999888888766
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++. .|||+++|++|++
T Consensus 141 LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~-~~~~-~~d~i~~l~~G~i 218 (279)
T PRK13635 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL-DEAA-QADRVIVMNKGEI 218 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHH-cCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875599999999996 5665 5999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 219 ~~~g~~~~~~ 228 (279)
T PRK13635 219 LEEGTPEEIF 228 (279)
T ss_pred EEECCHHHHh
Confidence 9999988765
No 78
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.6e-39 Score=394.94 Aligned_cols=221 Identities=22% Similarity=0.290 Sum_probs=197.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|.|..|++++++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I-----~~Gei~aLLG~N-----GAGKSTLLkiLaGLl~P---tsG~I~i~G~dI 994 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITF-----YENQITAFLGHN-----GAGKTTTLSILTGLLPP---TSGTVLVGGKDI 994 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEE-----cCCcEEEEECCC-----CChHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 56789999998545678999999999 678888888887 89999999999999999 599999999998
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.. ..|+.+||++|++.+++.+||+||+.|.++++. .+.++.+++++++++.+||.+.+|+.+++ ||
T Consensus 995 ~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~~~--------LS 1063 (2272)
T TIGR01257 995 ETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEAQD--------LS 1063 (2272)
T ss_pred cchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhh--------CC
Confidence 64 367889999999999999999999999877653 23344556789999999999999999877 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
|||||||+||+||+.+|+++||||||+|||+.++++++++|++++ +|+|||++||++ +++..+|||+++|++|+++.
T Consensus 1064 GGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~ 1140 (2272)
T TIGR01257 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYC 1140 (2272)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999994 489999999996 68889999999999999999
Q ss_pred ecChHHHHHHH
Q psy2519 254 IGSKDAALAFL 264 (622)
Q Consensus 254 ~G~~~~~~~~~ 264 (622)
.|++.++.+.+
T Consensus 1141 ~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1141 SGTPLFLKNCF 1151 (2272)
T ss_pred ecCHHHHHHhc
Confidence 99999887654
No 79
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.5e-42 Score=340.57 Aligned_cols=208 Identities=28% Similarity=0.380 Sum_probs=178.3
Q ss_pred cccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++||+++|..++ .++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i-----~~G~~~~l~G~n-----GsGKSTLl~~i~Gl~~~---~~G~i~~~g~~ 67 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSI-----EKGEFVAIVGPS-----GSGKSTLLNILGGLDRP---TSGEVRVDGTD 67 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEE-----cCCCEEEEEcCC-----CCCHHHHHHHHhCCcCC---CceeEEECCEe
Confidence 36889999873221 67999999999 678888888887 89999999999999998 58999999998
Q ss_pred cCc-c-------ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 96 VEG-K-------FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 96 ~~~-~-------~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
+.. . .++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+||.+..++.+++
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 140 (218)
T cd03255 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYPSE---- 140 (218)
T ss_pred hhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcChhh----
Confidence 753 1 24679999999999999999999999765432 12233456788999999998888888766
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++. .||++++|+
T Consensus 141 ----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~ 214 (218)
T cd03255 141 ----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELR 214 (218)
T ss_pred ----cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEee
Confidence 9999999999999999999999999999999999999999999999874589999999996 5665 999999999
Q ss_pred CCce
Q psy2519 248 DSRT 251 (622)
Q Consensus 248 ~G~i 251 (622)
+|++
T Consensus 215 ~G~i 218 (218)
T cd03255 215 DGKI 218 (218)
T ss_pred CCcC
Confidence 9974
No 80
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-41 Score=346.64 Aligned_cols=218 Identities=24% Similarity=0.312 Sum_probs=188.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 67 (250)
T PRK11264 3 AIEVKNLVKKF--HGQTVLHGIDLEV-----KPGEVVAIIGPS-----GSGKTTLLRCINLLEQP---EAGTIRVGDITI 67 (250)
T ss_pred cEEEeceEEEE--CCeeeeccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeEEEECCEEc
Confidence 47899999997 5667999999999 677788888777 89999999999999988 589999999987
Q ss_pred Cc------------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 97 EG------------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 97 ~~------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
.. ..++.+|||+|++.+++.+||.||+.++...... ....+..++++++++.+||.+..++.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~- 144 (250)
T PRK11264 68 DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKG--EPKEEATARARELLAKVGLAGKETSYPRR- 144 (250)
T ss_pred cccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhCChhh-
Confidence 42 2467899999999999999999999886432111 12334456788999999998878887666
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ +++.++||+++
T Consensus 145 -------LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~-~~~~~~~d~i~ 215 (250)
T PRK11264 145 -------LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEM-SFARDVADRAI 215 (250)
T ss_pred -------CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEE
Confidence 999999999999999999999999999999999999999999999987 589999999996 68888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 216 ~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 216 FMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988663
No 81
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=365.82 Aligned_cols=216 Identities=22% Similarity=0.309 Sum_probs=186.9
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++++.+.| |...+++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++..
T Consensus 30 ~~~~~~~~~--~~~~~L~~isl~i-----~~Gei~~LvG~N-----GsGKSTLLr~I~Gl~~p---~sG~I~i~G~~i~~ 94 (400)
T PRK10070 30 SKEQILEKT--GLSLGVKDASLAI-----EEGEIFVIMGLS-----GSGKSTMVRLLNRLIEP---TRGQVLIDGVDIAK 94 (400)
T ss_pred cHHHHHhhc--CCeEEEEeEEEEE-----cCCCEEEEECCC-----CchHHHHHHHHHcCCCC---CCCEEEECCEECCc
Confidence 344555553 5556899999999 677888888776 89999999999999999 58999999999753
Q ss_pred ----c----ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 99 ----K----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 99 ----~----~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. .++.+|||+|++.+++.+||+||+.+....+. .+..+..++++++++.+||.+..++++.+
T Consensus 95 ~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~~~------- 164 (400)
T PRK10070 95 ISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYPDE------- 164 (400)
T ss_pred CCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCccc-------
Confidence 1 24679999999999999999999999865542 23344556788999999999888888666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++||++ +++.++||++++|++|+
T Consensus 165 -LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~ 242 (400)
T PRK10070 165 -LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGE 242 (400)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999875699999999996 68889999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++..|+++++.
T Consensus 243 i~~~g~~~~l~ 253 (400)
T PRK10070 243 VVQVGTPDEIL 253 (400)
T ss_pred EEecCCHHHHH
Confidence 99999998764
No 82
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=353.30 Aligned_cols=218 Identities=20% Similarity=0.288 Sum_probs=187.2
Q ss_pred cccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||+++|..+. .++|+++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~L~Gl~~p---~~G~i~~~g~ 69 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEF-----EQGKYYAIVGQT-----GSGKSTLIQNINALLKP---TTGTVTVDDI 69 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCE
Confidence 57899999984322 46999999999 677788888877 89999999999999999 5899999999
Q ss_pred ecCc--------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCC
Q psy2519 95 PVEG--------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~--------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~ 163 (622)
++.. .+++.+|||||++ .+++ .||.||+.|+..... .+..+..++++++++.+||. +..++.+.+
T Consensus 70 ~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 145 (286)
T PRK13646 70 TITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFK---MNLDEVKNYAHRLLMDLGFSRDVMSQSPFQ 145 (286)
T ss_pred ECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCCccc
Confidence 8742 3577899999985 4555 599999998754321 23445566789999999996 677777666
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|||||||+|||+.++.++.++|++++++.|+|||++||++ +++.++|||+
T Consensus 146 --------LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri 216 (286)
T PRK13646 146 --------MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEV 216 (286)
T ss_pred --------CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEE
Confidence 9999999999999999999999999999999999999999999999875699999999996 6788899999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998765
No 83
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-41 Score=344.33 Aligned_cols=217 Identities=25% Similarity=0.344 Sum_probs=188.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~--~~~~il~~~s~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHF--GPTQVLHNIDLNI-----DQGEVVVIIGPS-----GSGKSTLLRCINKLEEI---TSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEE--CCeEEeeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence 5789999986 5677999999999 678888888877 89999999999999998 5899999999875
Q ss_pred c------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 98 G------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
. ..++.++|++|++.+++.+||+||+.+...... .....+..+++.++++.+||.+..++.+.+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-------- 136 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPSE-------- 136 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChhh--------
Confidence 3 246789999999999999999999988642111 122334456788999999998888888666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.+.||++++|++|++
T Consensus 137 LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i 214 (240)
T PRK09493 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEI-GFAEKVASRLIFIDKGRI 214 (240)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999986 689999999996 678889999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 215 ~~~g~~~~~~ 224 (240)
T PRK09493 215 AEDGDPQVLI 224 (240)
T ss_pred EeeCCHHHHh
Confidence 9999988764
No 84
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=356.94 Aligned_cols=230 Identities=19% Similarity=0.262 Sum_probs=192.0
Q ss_pred CcccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
.++++||+++|..+ ..++|+++|+++ ++|+.++|+|+| |||||||+++|+|+.+| .+|+|.++|
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i-----~~Ge~~~I~G~n-----GsGKSTLl~~L~Gl~~p---~~G~I~i~g 87 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTF-----EKNKIYFIIGNS-----GSGKSTLVTHFNGLIKS---KYGTIQVGD 87 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCeEEECC
Confidence 36889999998432 246999999999 677788888776 89999999999999998 589999999
Q ss_pred EecCc--------------------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh
Q psy2519 94 KPVEG--------------------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL 151 (622)
Q Consensus 94 ~~~~~--------------------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l 151 (622)
+++.. ..++.+|||+|++ .+++ .||+||+.|+..... .+.++..++++++++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~ 163 (320)
T PRK13631 88 IYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALG---VKKSEAKKLAKFYLNKM 163 (320)
T ss_pred EEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcC---CCHHHHHHHHHHHHHHc
Confidence 87632 2568899999986 4665 499999998754321 23444556788999999
Q ss_pred CCC-cccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEec
Q psy2519 152 GLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 152 gL~-~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH 230 (622)
||. +..++.+.+ ||||||||++|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++||
T Consensus 164 gL~~~~~~~~~~~--------LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtH 234 (320)
T PRK13631 164 GLDDSYLERSPFG--------LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITH 234 (320)
T ss_pred CCChhHhcCCccc--------CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 996 567777655 999999999999999999999999999999999999999999999986 6999999999
Q ss_pred cCcHHHHhhccceeeecCCceEEecChHHHH---HHHHhCCCCCCC
Q psy2519 231 QPSSELIDMFDKIILLADSRTAFIGSKDAAL---AFLESQGYPCPY 273 (622)
Q Consensus 231 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~---~~~~~~g~~~p~ 273 (622)
++ +++.+.|||+++|++|+++..|+++++. +.+...++..|.
T Consensus 235 d~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 96 5788899999999999999999999775 334455665554
No 85
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2e-41 Score=342.07 Aligned_cols=217 Identities=27% Similarity=0.387 Sum_probs=187.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|++++| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|.++
T Consensus 1 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~i 65 (236)
T TIGR03864 1 ALEVAGLSFAY--GARRALDDVSFTV-----RPGEFVALLGPN-----GAGKSTLFSLLTRLYVA---QEGQISVAGHDL 65 (236)
T ss_pred CEEEEeeEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCcCC---CceEEEECCEEc
Confidence 35789999986 5678999999999 678888888887 89999999999999998 589999999987
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.. ..++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+||.+..++.+++ ||
T Consensus 66 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------LS 134 (236)
T TIGR03864 66 RRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG---LSRAEARERIAALLARLGLAERADDKVRE--------LN 134 (236)
T ss_pred ccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhcCChhh--------CC
Confidence 53 234689999999988899999999988764432 12333455688999999999888888776 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++.|.|+|++||++ +++. .||++++|++|+++.
T Consensus 135 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~ 212 (236)
T TIGR03864 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV-DEIE-ADDRLVVLHRGRVLA 212 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhHh-hCCEEEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999864689999999997 5665 599999999999999
Q ss_pred ecChHHHH
Q psy2519 254 IGSKDAAL 261 (622)
Q Consensus 254 ~G~~~~~~ 261 (622)
.|+++++.
T Consensus 213 ~~~~~~~~ 220 (236)
T TIGR03864 213 DGAAAELR 220 (236)
T ss_pred eCCHHHHH
Confidence 99988664
No 86
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=7.5e-42 Score=343.14 Aligned_cols=213 Identities=22% Similarity=0.324 Sum_probs=182.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC-----CCCCceeeEEEEC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV-----IDDCIIDGDIRVN 92 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~-----~~~~~~~G~I~~~ 92 (622)
++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+. +| .+|+|.++
T Consensus 1 i~~~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYY--GDKHALKDISLDI-----PKGEITALIGPS-----GCGKSTLLRLLNRLNDLIPGAP---DEGEVLLD 65 (227)
T ss_pred CEEEEEEEEc--CCceeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhcccccCCC---CCeEEEEC
Confidence 3688999986 5667999999999 677788888777 899999999999999 77 58999999
Q ss_pred CEecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCcc--CCc
Q psy2519 93 GKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI--GSS 164 (622)
Q Consensus 93 G~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v--~~~ 164 (622)
|+++.. ..++.+||++|++.++ .+||+||+.+....... ....+..++++++++.+||.+..++.+ .+
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 141 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLHALG- 141 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCCccc-
Confidence 998742 2467899999998888 79999999987654321 122224567889999999987766653 44
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|+++++ + +|||++||++ +++.++||+++
T Consensus 142 -------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~-~~~~~~~d~i~ 211 (227)
T cd03260 142 -------LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNM-QQAARVADRTA 211 (227)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999987 5 8999999996 67888999999
Q ss_pred eecCCceEEecChHH
Q psy2519 245 LLADSRTAFIGSKDA 259 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~ 259 (622)
+|++|++++.|++++
T Consensus 212 ~l~~G~i~~~g~~~~ 226 (227)
T cd03260 212 FLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEeCCEEEEecCccc
Confidence 999999999998764
No 87
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.2e-41 Score=340.24 Aligned_cols=214 Identities=26% Similarity=0.391 Sum_probs=185.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGY--GKSQILFGVSLTV-----PEGEIVALLGRN-----GAGKTTLLKTIMGLLPP---RSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeec--CCeeEeeeeeEEE-----cCCeEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEcC
Confidence 3688999986 5667999999999 678888888777 89999999999999998 5899999999875
Q ss_pred c----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh-CCCcccCCccCCcCCCCccc
Q psy2519 98 G----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~~~~~~~~g 171 (622)
. . .++.++|++|++.+++.+|++||+.+...... ..+..++++++++.+ ++.+..++.+.+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~-------- 132 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAGT-------- 132 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchhh--------
Confidence 3 1 35679999999999999999999998754331 122345567888888 577777887666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|+++++ .|+|||++||++ +++.++||++++|++|++
T Consensus 133 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i 210 (222)
T cd03224 133 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLERGRV 210 (222)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEeeCCeE
Confidence 999999999999999999999999999999999999999999999987 689999999996 678899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
+..|+++++.
T Consensus 211 ~~~~~~~~~~ 220 (222)
T cd03224 211 VLEGTAAELL 220 (222)
T ss_pred EEeCCHHHHh
Confidence 9999887653
No 88
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-41 Score=348.68 Aligned_cols=216 Identities=23% Similarity=0.295 Sum_probs=188.0
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
.++||++.| |..++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 26 ~~~~~~~~~--~~~~il~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~L~Gl~~p---~~G~i~i~g~~~~~ 90 (269)
T cd03294 26 SKEEILKKT--GQTVGVNDVSLDV-----REGEIFVIMGLS-----GSGKSTLLRCINRLIEP---TSGKVLIDGQDIAA 90 (269)
T ss_pred hhhhhhhhc--CCceEeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeEEEECCEEccc
Confidence 567888875 7788999999999 678888888777 89999999999999998 48999999998753
Q ss_pred ----c----ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 99 ----K----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 99 ----~----~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. .++.+||++|++.+++.+||+||+.+...... ....+..++++++++.+||.+..++.+++
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 160 (269)
T cd03294 91 MSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYPDE------- 160 (269)
T ss_pred cChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCccc-------
Confidence 1 14679999999999999999999998754432 12334456788999999999888888776
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++||++ +++.++||++++|++|+
T Consensus 161 -LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~ 238 (269)
T cd03294 161 -LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGR 238 (269)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999864589999999996 67889999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 239 i~~~g~~~~~~ 249 (269)
T cd03294 239 LVQVGTPEEIL 249 (269)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
No 89
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-42 Score=320.60 Aligned_cols=217 Identities=26% Similarity=0.368 Sum_probs=191.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++.+++++.+|.--...+++++|+++ ++|+.++++|+ ||||||||||+++|..+| ..|+|.+||+++
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~i-----a~ge~vv~lGp-----SGcGKTTLLnl~AGf~~P---~~G~i~l~~r~i 69 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTI-----ASGELVVVLGP-----SGCGKTTLLNLIAGFVTP---SRGSIQLNGRRI 69 (259)
T ss_pred eeehhheEEecCCcchhhhhccceee-----cCCCEEEEEcC-----CCccHHHHHHHHhcCcCc---ccceEEECCEec
Confidence 45678999987322244899999999 67777777766 489999999999999999 589999999999
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
+.. ...-|.|||++.|+|++||.||++|+.+++. +++.++++++.+.+..+||++..++++-+ |||||
T Consensus 70 ~gP-gaergvVFQ~~~LlPWl~~~dNvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i~q--------LSGGm 137 (259)
T COG4525 70 EGP-GAERGVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYIWQ--------LSGGM 137 (259)
T ss_pred cCC-CccceeEeccCccchhhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccceEe--------ecchH
Confidence 752 2234899999999999999999999998875 67888999999999999999999999777 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec--CCceEEe
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAFI 254 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~--~G~iv~~ 254 (622)
||||.|||||+.+|++|+||||+++||..+++++.++|-+++++.|+.++++||+. +|+.-+++|+++|+ .||++..
T Consensus 138 rQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~ 216 (259)
T COG4525 138 RQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVER 216 (259)
T ss_pred HHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEe
Confidence 99999999999999999999999999999999999999999998899999999996 67777999999998 5899987
Q ss_pred cChHH
Q psy2519 255 GSKDA 259 (622)
Q Consensus 255 G~~~~ 259 (622)
=+++-
T Consensus 217 ~~~df 221 (259)
T COG4525 217 LPLDF 221 (259)
T ss_pred cCCCH
Confidence 77663
No 90
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=356.98 Aligned_cols=222 Identities=18% Similarity=0.255 Sum_probs=191.5
Q ss_pred CCcccCCccccccc--------cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee
Q psy2519 16 NNEEVPNVDFSEIV--------GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG 87 (622)
Q Consensus 16 ~~~~~~~~~~~~~~--------g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G 87 (622)
..++++||+++|.. +..+++++||+++ .+|+.+.|+|+| |||||||+++|+|+++| .+|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~IvG~s-----GsGKSTLl~~l~gl~~p---~~G 70 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTL-----ERGKTLAVVGES-----GCGKSTLARLLTMIETP---TGG 70 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEE-----CCCCEEEEECCC-----CCcHHHHHHHHHcCCCC---CCc
Confidence 35789999999852 1367999999999 677888888776 89999999999999998 489
Q ss_pred EEEECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-ccc
Q psy2519 88 DIRVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQ 157 (622)
Q Consensus 88 ~I~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 157 (622)
+|.++|+++.. .+|+.+|||||++ .+.|.+||.+++........ ...+.+.++++.++++.+||. +..
T Consensus 71 ~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~ 148 (327)
T PRK11308 71 ELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHY 148 (327)
T ss_pred EEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHh
Confidence 99999999753 2567899999997 69999999999987655432 123445667889999999996 356
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++++.+ |||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++.|.|+|++|||+ ..+.
T Consensus 149 ~~~p~~--------LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~ 219 (327)
T PRK11308 149 DRYPHM--------FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVE 219 (327)
T ss_pred cCCCcc--------CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHH
Confidence 777555 9999999999999999999999999999999999999999999999886699999999996 6888
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++||+|++|++|++++.|+++++.
T Consensus 220 ~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 220 HIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HhCCEEEEEECCEEEEECCHHHHh
Confidence 899999999999999999999875
No 91
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=7.1e-42 Score=338.73 Aligned_cols=206 Identities=26% Similarity=0.339 Sum_probs=181.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~~~~~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTY--GKKRVLDDISLHV-----KKGEIYGFLGPN-----GAGKTTTMKIILGLIKP---DSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEE--CCeEeEeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCcCC---CceEEEECCCccc
Confidence 3678999987 5678999999999 677788888777 89999999999999998 5999999999875
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.++||+|++.+++.+||+||+.++..... . ..++++++++.++|.+..++.+++ ||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 130 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKVKG--------FSLG 130 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhHhh--------CCHH
Confidence 3 356789999999999999999999998764332 1 134578899999999888888766 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
|||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|++||++ +++.+++|++++|++|++++.|
T Consensus 131 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 131 MKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999987 689999999996 6788899999999999998765
No 92
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-41 Score=339.89 Aligned_cols=215 Identities=25% Similarity=0.328 Sum_probs=183.3
Q ss_pred CcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||++.|..++ .++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~ 71 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSI-----GEGEMMAIVGSS-----GSGKSTLLHLLGGLDTP---TSGDVIFNGQ 71 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCE
Confidence 468999999984332 57999999999 677788888777 89999999999999998 5999999999
Q ss_pred ecCcc-------c-cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 95 PVEGK-------F-RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~~-------~-r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
++... . ++.+||++|++.+++.+||+||+.+...... ....+.+++++++++.+||.+..++.+.+
T Consensus 72 ~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--- 145 (233)
T PRK11629 72 PMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK---KKPAEINSRALEMLAAVGLEHRANHRPSE--- 145 (233)
T ss_pred EcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCChhh---
Confidence 87531 2 3679999999999999999999998754321 12334456788999999998888887666
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++||++ +++.. +|++++|
T Consensus 146 -----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l 218 (233)
T PRK11629 146 -----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEM 218 (233)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEE
Confidence 9999999999999999999999999999999999999999999999864689999999996 56655 5899999
Q ss_pred cCCceEEecCh
Q psy2519 247 ADSRTAFIGSK 257 (622)
Q Consensus 247 ~~G~iv~~G~~ 257 (622)
++|++++.|+.
T Consensus 219 ~~G~i~~~~~~ 229 (233)
T PRK11629 219 RDGRLTAELSL 229 (233)
T ss_pred ECCEEEEEecc
Confidence 99999988763
No 93
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=343.08 Aligned_cols=224 Identities=21% Similarity=0.291 Sum_probs=193.4
Q ss_pred cccCCccccccc--cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC-C-CCceeeEEEECC
Q psy2519 18 EEVPNVDFSEIV--GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI-D-DCIIDGDIRVNG 93 (622)
Q Consensus 18 ~~~~~~~~~~~~--g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~-~-~~~~~G~I~~~G 93 (622)
++++||+.+|.. |.+++++||||++ ++|+.+.|+|. |||||||+.++|.|+++ + +...+|+|.++|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i-----~~GE~lgiVGE-----SGsGKS~~~~aim~llp~~~~~i~~G~i~f~g 71 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFEL-----KKGEILGIVGE-----SGSGKSVLAKAIMGLLPKPNARIVGGEILFDG 71 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEE-----cCCcEEEEEcC-----CCCCHHHHHHHHHhccCCCCCeEeeeEEEECC
Confidence 578999999865 3478999999999 67777777766 48999999999999997 4 345789999999
Q ss_pred EecCc-------c-ccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc---cCCc
Q psy2519 94 KPVEG-------K-FRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS---QHTR 160 (622)
Q Consensus 94 ~~~~~-------~-~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~ 160 (622)
+++.. + ..+.|+|+||++ .|.|.+||.+.+.-..+.+.... .+++.++++.++|+.+||.+. .+.+
T Consensus 72 ~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y 150 (316)
T COG0444 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY 150 (316)
T ss_pred cccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC
Confidence 98743 1 357899999996 69999999999988776543111 355677889999999999753 3555
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
|++ |||||||||.||.||+.+|++||.||||++||...+.+|+++|++++++.|+++|++|||+ ..+.++|
T Consensus 151 -----Phe---lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~a 221 (316)
T COG0444 151 -----PHE---LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIA 221 (316)
T ss_pred -----Ccc---cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhc
Confidence 777 9999999999999999999999999999999999999999999999988899999999996 6899999
Q ss_pred cceeeecCCceEEecChHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|||+||..|++|+.|++++++
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999776
No 94
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-41 Score=349.41 Aligned_cols=219 Identities=21% Similarity=0.328 Sum_probs=189.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~-~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GaGKSTLl~~i~Gl~~p---~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS-DGTHALKGININI-----KKGEVTAILGGN-----GAGKSTLFQNLNGILKP---SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC-CCCeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CccEEEECCEEC
Confidence 478999999973 3567999999999 677888888887 89999999999999998 589999999987
Q ss_pred Cc------cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EG------KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~------~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
.. .+++.+||++|++. .+...||+||+.+...... .+..+..++++++++.+||.+..++.+.+
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~------ 141 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK---LPEDEVRKRVDNALKRTGIEHLKDKPTHC------ 141 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhCCccc------
Confidence 41 35678999999863 3445799999998654321 23344556789999999999888888777
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.++|++++++.|+|||++||++ +++.++|||+++|++|
T Consensus 142 --LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G 218 (283)
T PRK13636 142 --LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEG 218 (283)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999875599999999996 6788899999999999
Q ss_pred ceEEecChHHHH
Q psy2519 250 RTAFIGSKDAAL 261 (622)
Q Consensus 250 ~iv~~G~~~~~~ 261 (622)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (283)
T PRK13636 219 RVILQGNPKEVF 230 (283)
T ss_pred EEEEeCCHHHHh
Confidence 999999998865
No 95
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.5e-41 Score=335.66 Aligned_cols=202 Identities=26% Similarity=0.359 Sum_probs=174.5
Q ss_pred ccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 19 EVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 19 ~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
+++||+++| ++ .++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 ~~~~l~~~~--~~~~~~l~~v~~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 65 (205)
T cd03226 1 RIENISFSY--KKGTEILDDLSLDL-----YAGEIIALTGKN-----GAGKTTLAKILAGLIKE---SSGSILLNGKPIK 65 (205)
T ss_pred CcccEEEEe--CCcCceeeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEhh
Confidence 478999987 44 67999999999 677788888777 89999999999999998 5999999999875
Q ss_pred c-cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G-KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~-~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.+||++|++. .+..+||+||+.++..... . ..++++++++.+||.+..++.+.+ ||||
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 130 (205)
T cd03226 66 AKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD----A---GNEQAETVLKDLDLYALKERHPLS--------LSGG 130 (205)
T ss_pred hHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC----c---cHHHHHHHHHHcCCchhcCCCchh--------CCHH
Confidence 4 45678999999974 3446799999988653321 1 124678999999999888888766 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||++ +++.++||++++|++|+++
T Consensus 131 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 131 QKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999999999999987 699999999996 6788899999999999875
No 96
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.5e-41 Score=342.72 Aligned_cols=219 Identities=21% Similarity=0.332 Sum_probs=186.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
+++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+|.. ..+|+|.++|+
T Consensus 1 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 1 AIEIENLNLFY--GEKEALKNINLDI-----PKNQVTALIGPS-----GCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred CEEEEEEEEEE--CCeeeecceeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 35789999986 5667999999999 677788888777 8999999999999998720 11899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++ +||.||+.+....+. ..+..+..++++++++.+||. +..++.+++
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 144 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSALG- 144 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCccc-
Confidence 8752 24678999999998888 999999998764432 112334456788999999997 666777665
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||+++
T Consensus 145 -------LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~i~ 214 (247)
T TIGR00972 145 -------LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNM-QQAARISDRTA 214 (247)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999976 38999999996 67889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 215 ~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 215 FFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
No 97
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.5e-41 Score=336.24 Aligned_cols=206 Identities=25% Similarity=0.377 Sum_probs=179.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|. ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-~~~~il~~is~~i-----~~G~~~~l~G~n-----GsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP-GGVAALHDVSLHI-----RKGEFLFLTGPS-----GAGKTTLLKLLYGALTP---SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC-CCceeecceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEcc
Confidence 57899999873 4567999999999 677788888777 89999999999999988 5899999999875
Q ss_pred c-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 98 G-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 98 ~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. .+++.++|++|++.+++.+||.||+.+...... ....+..++++++++.++|.+..++.+.+
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 137 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFPEQ------- 137 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh-------
Confidence 3 246789999999999999999999998754432 12233456788999999998877887666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|+
T Consensus 138 -LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 138 -LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999999999986 689999999996 68888999999999985
No 98
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=341.74 Aligned_cols=218 Identities=23% Similarity=0.305 Sum_probs=189.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~~sl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAY--KGRRVVEDVSLTV-----NSGEIVGLLGPN-----GAGKTTTFYMVVGIVPR---DAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEe--CCEEEEeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEEC
Confidence 46789999987 5678999999999 678888888777 89999999999999998 589999999987
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.++|++|++.+++.+||.||+.+...... .....+.+++++++++.+|+.+..++.+++
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 137 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQS-------- 137 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchhh--------
Confidence 53 145789999999999999999999988654321 112334456788999999998877777666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.++++++ .|+|||++||++ +++.+.||++++|++|++
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i 215 (241)
T PRK10895 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQGHL 215 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeCCeE
Confidence 999999999999999999999999999999999999999999999986 699999999996 688899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 216 ~~~~~~~~~~ 225 (241)
T PRK10895 216 IAHGTPTEIL 225 (241)
T ss_pred EeeCCHHHHh
Confidence 9999988764
No 99
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.8e-41 Score=343.10 Aligned_cols=218 Identities=22% Similarity=0.282 Sum_probs=188.1
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 4 ~~l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~ 68 (257)
T PRK10619 4 NKLNVIDLHKRY--GEHEVLKGVSLQA-----NAGDVISIIGSS-----GSGKSTFLRCINFLEKP---SEGSIVVNGQT 68 (257)
T ss_pred ccEEEeeeEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCEE
Confidence 467899999997 5678999999999 677788888777 89999999999999998 58999999998
Q ss_pred cCc-----------------cccccEEEEecCCCCCCCCCHHHHHHHHHH-cCCCccccHHHHHHHHHHHHHHhCCCccc
Q psy2519 96 VEG-----------------KFRSACGFMYQHDLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQ 157 (622)
Q Consensus 96 ~~~-----------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 157 (622)
+.. .+++.++||+|++.+++.+||+||+.++.. ... ....+.++++.++++.+|+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~ 145 (257)
T PRK10619 69 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG---LSKQEARERAVKYLAKVGIDERA 145 (257)
T ss_pred cccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCChhh
Confidence 641 246789999999999999999999987542 221 12344456788999999998764
Q ss_pred -CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 158 -HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 158 -~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
++.+.+ ||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++
T Consensus 146 ~~~~~~~--------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~~~ 215 (257)
T PRK10619 146 QGKYPVH--------LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-GFA 215 (257)
T ss_pred hhCCccc--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHH
Confidence 666555 999999999999999999999999999999999999999999999987 699999999996 678
Q ss_pred HhhccceeeecCCceEEecChHHHH
Q psy2519 237 IDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 237 ~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
.++|||+++|++|++++.|+++++.
T Consensus 216 ~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 216 RHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHhh
Confidence 8899999999999999999988654
No 100
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-41 Score=343.57 Aligned_cols=214 Identities=27% Similarity=0.376 Sum_probs=185.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 1 ml~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 65 (255)
T PRK11248 1 MLQISHLYADY--GGKPALEDINLTL-----ESGELLVVLGPS-----GCGKTTLLNLIAGFVPY---QHGSITLDGKPV 65 (255)
T ss_pred CEEEEEEEEEe--CCeeeEeeeeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEEC
Confidence 36789999986 5677999999999 678888888887 89999999999999998 589999999987
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
.. .++.+||++|++.+++.+||.||+.+...... ....+..++++++++.+||.+..++.+.+ |||||
T Consensus 66 ~~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------LSgGq 133 (255)
T PRK11248 66 EG-PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRYIWQ--------LSGGQ 133 (255)
T ss_pred CC-CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCChhh--------CCHHH
Confidence 54 34568999999999999999999988754332 22334456788999999998888887666 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec--CCceEEe
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAFI 254 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~--~G~iv~~ 254 (622)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|+ +|+++..
T Consensus 134 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 134 RQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEE
Confidence 99999999999999999999999999999999999999999764689999999996 68889999999998 5999988
Q ss_pred cChH
Q psy2519 255 GSKD 258 (622)
Q Consensus 255 G~~~ 258 (622)
++.+
T Consensus 213 ~~~~ 216 (255)
T PRK11248 213 LPLN 216 (255)
T ss_pred ecCC
Confidence 7654
No 101
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-41 Score=335.72 Aligned_cols=208 Identities=27% Similarity=0.417 Sum_probs=180.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ ++| .++++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~~~~~~--~~~~~l~~vs~~i-----~~g-~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRY--GKKRALDGVSLTL-----GPG-MYGLLGPN-----GAGKTTLMRILATLTPP---SSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEE--CCEEEEcceeEEE-----cCC-cEEEECCC-----CCCHHHHHHHHhCCCCC---CccEEEECCCccc
Confidence 3678999986 5567999999999 565 77777776 89999999999999998 5899999998875
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.++|++|++.+++.+||.||+.+...... ....+..++++++++.+||.+..++.+.+ |||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 133 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKIGS--------LSG 133 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCchhh--------CCH
Confidence 3 357789999999999999999999998765432 12233456788999999998888888666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++||+++|++|++++.
T Consensus 134 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 134 GMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999999975 48999999996 678889999999999999876
Q ss_pred c
Q psy2519 255 G 255 (622)
Q Consensus 255 G 255 (622)
|
T Consensus 211 g 211 (211)
T cd03264 211 G 211 (211)
T ss_pred C
Confidence 5
No 102
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-41 Score=343.22 Aligned_cols=221 Identities=22% Similarity=0.306 Sum_probs=188.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRF--GGLLAVNNVNLEV-----REQEIVSLIGPN-----GAGKTTVFNCLTGFYKP---TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEE--CCEEEEEeeeeEE-----cCCeEEEEECCC-----CCCHHHHHHHHhCCcCC---CcceEEECCEEC
Confidence 47899999986 6678999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC----------c--cccHHHHHHHHHHHHHHhCCCcccCC
Q psy2519 97 EG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD----------R--RVKAYQRIALINSLLIELGLMNSQHT 159 (622)
Q Consensus 97 ~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~----------~--~~~~~~~~~~v~~~l~~lgL~~~~~~ 159 (622)
.. . .+..++|++|++.+++.+||+||+.++...... . .....+..++++++++.+||.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 53 1 345699999999999999999999986431100 0 00112234567889999999888888
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~ 239 (622)
.+++ ||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++
T Consensus 150 ~~~~--------LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~ 220 (255)
T PRK11300 150 QAGN--------LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGI 220 (255)
T ss_pred Chhh--------CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHh
Confidence 8777 9999999999999999999999999999999999999999999999874589999999996 688899
Q ss_pred ccceeeecCCceEEecChHHHH
Q psy2519 240 FDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
||++++|++|++++.|+++++.
T Consensus 221 ~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 221 SDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred CCEEEEEECCeEEecCCHHHHh
Confidence 9999999999999999988653
No 103
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-41 Score=352.55 Aligned_cols=224 Identities=17% Similarity=0.201 Sum_probs=188.2
Q ss_pred CcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC-ceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC-IIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~-~~~G~I~~~G 93 (622)
.++++||+++|..++ .+++++|||++ .+|+.+.++|+| |||||||+++|+|++++.. ..+|+|.++|
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~lvG~s-----GsGKSTL~~~l~Gll~~~~~~~~G~i~~~G 72 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSV-----KQGEVVGIVGES-----GSGKSVSSLAIMGLIDYPGRVMAEKLEFNG 72 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEE-----CCCCEEEEECCC-----CChHHHHHHHHHcCCCCCCCCcceEEEECC
Confidence 468999999984322 57999999999 677778888776 8999999999999997421 2589999999
Q ss_pred EecCc----c----ccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc---ccCCc
Q psy2519 94 KPVEG----K----FRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTR 160 (622)
Q Consensus 94 ~~~~~----~----~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ 160 (622)
+++.. . .++.+|||||++ .+.|.+||.+++........ ...+++.++++.++++.+||.+ ..+++
T Consensus 73 ~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~ 150 (326)
T PRK11022 73 QDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY 150 (326)
T ss_pred EECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 99753 1 235799999997 58999999999877654432 1234455678899999999974 34666
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
+++ |||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++.|.|+|++|||+ ..+.+++
T Consensus 151 p~~--------LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~a 221 (326)
T PRK11022 151 PHQ--------LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAA 221 (326)
T ss_pred chh--------CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhC
Confidence 444 9999999999999999999999999999999999999999999999876799999999996 6788899
Q ss_pred cceeeecCCceEEecChHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|||++|++|++++.|+++++.
T Consensus 222 dri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 222 HKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred CEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999875
No 104
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=9e-41 Score=352.59 Aligned_cols=224 Identities=19% Similarity=0.297 Sum_probs=189.4
Q ss_pred CcccCCccccccc--cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIV--GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~--g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.++++||+++|.. |..++++++|+++ .+|+.+.++|+| |||||||+++|+|+++|+...+|+|.++|+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~ivG~s-----GsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~ 81 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSL-----RAGETLGIVGES-----GSGKSQTAFALMGLLAANGRIGGSATFNGR 81 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEE-----cCCCEEEEECCC-----CchHHHHHHHHHcCCCCCCCCCeEEEECCE
Confidence 4789999999843 3467999999999 677888888776 899999999999999884224899999999
Q ss_pred ecCc----c---c-cccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc---CCcc
Q psy2519 95 PVEG----K---F-RSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ---HTRI 161 (622)
Q Consensus 95 ~~~~----~---~-r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~---~~~v 161 (622)
++.. + + ++.++||||++ .+.|.+|+.+++........+ ..+.+..+++.++++.+||.+.. +++
T Consensus 82 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~--~~~~~~~~~~~~~L~~vgL~~~~~~~~~~- 158 (330)
T PRK09473 82 EILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG--MSKAEAFEESVRMLDAVKMPEARKRMKMY- 158 (330)
T ss_pred ECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCChHHHhcCC-
Confidence 9853 1 2 25799999997 689999999999876544321 23455567889999999997532 344
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
|++ |||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++.|.|+|++|||+ ..+.+++|
T Consensus 159 ----p~~---LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~D 230 (330)
T PRK09473 159 ----PHE---FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICD 230 (330)
T ss_pred ----ccc---CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCC
Confidence 444 9999999999999999999999999999999999999999999999886699999999996 67888999
Q ss_pred ceeeecCCceEEecChHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~ 261 (622)
|+++|++|++++.|+++++.
T Consensus 231 ri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 231 KVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999999875
No 105
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-41 Score=348.49 Aligned_cols=217 Identities=18% Similarity=0.252 Sum_probs=186.3
Q ss_pred cccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||++.|..+ +.++++++|+++ .+|+.+.++|+| ||||||||++|+|+++| .+|+|.++|+
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~iiG~N-----GaGKSTLl~~l~Gl~~p---~~G~i~~~g~ 69 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFEL-----EEGSFVALVGHT-----GSGKSTLMQHFNALLKP---SSGTITIAGY 69 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCE
Confidence 5689999997422 146999999999 678888888887 89999999999999999 5999999999
Q ss_pred ecCc--------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCC
Q psy2519 95 PVEG--------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~--------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~ 163 (622)
++.. ..++.+||++|++ .++ .+||.||+.+...... ...++..++++++++.+||. +..++.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 145 (287)
T PRK13641 70 HITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFG---FSEDEAKEKALKWLKKVGLSEDLISKSPFE 145 (287)
T ss_pred ECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhHhhCCccc
Confidence 8742 2457899999986 344 5799999998754332 23344556789999999997 677888777
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++
T Consensus 146 --------LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~-~~~~~~~d~v 215 (287)
T PRK13641 146 --------LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNM-DDVAEYADDV 215 (287)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999986 699999999996 6888999999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 106
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-41 Score=343.62 Aligned_cols=218 Identities=26% Similarity=0.335 Sum_probs=187.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~--~~~~il~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~p---~~G~i~~~g~~~ 66 (258)
T PRK13548 2 MLEARNLSVRL--GGRTLLDDVSLTL-----RPGEVVAILGPN-----GAGKSTLLRALSGELSP---DSGEVRLNGRPL 66 (258)
T ss_pred eEEEEeEEEEe--CCeeeeeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCEEEECCEEc
Confidence 46789999986 5677999999999 677788888887 89999999999999998 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.. ..++.+||++|++.+++.+||+||+.+...... ...++..++++++++.+||.+..++.+++ |
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------L 135 (258)
T PRK13548 67 ADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDYPQ--------L 135 (258)
T ss_pred ccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCccc--------C
Confidence 53 345789999999988888999999988643221 11223345678999999998888888777 9
Q ss_pred ChHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 173 SGGERKRLSFATELL------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 173 SgGqrqRvsIA~aL~------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||++ +++.++||++++|
T Consensus 136 SgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l 214 (258)
T PRK13548 136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLL 214 (258)
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEE
Confidence 999999999999999 599999999999999999999999999999844689999999996 6788899999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++..|+++++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 215 HQGRLVADGTPAEVL 229 (258)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988664
No 107
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=7.3e-41 Score=341.35 Aligned_cols=218 Identities=22% Similarity=0.315 Sum_probs=188.1
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRF--GILTVLDGLNFSV-----AAGEKVALIGPS-----GSGKSTILRILMTLEPI---DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEe--CCeeEEeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 3688999987 5678999999999 678888888887 89999999999999998 5899999999873
Q ss_pred c-----------------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCc
Q psy2519 98 G-----------------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 160 (622)
Q Consensus 98 ~-----------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 160 (622)
. ..++.++|++|++.+++.+||.||+.++..... .....+..++++++++.+|+.+..++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 1 246789999999999999999999988643211 122334456788999999998888887
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
+.+ ||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++.|.|+|++||++ +++.+++
T Consensus 144 ~~~--------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~ 214 (252)
T TIGR03005 144 PAQ--------LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFA 214 (252)
T ss_pred hhh--------cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhc
Confidence 666 9999999999999999999999999999999999999999999999875589999999996 6788899
Q ss_pred cceeeecCCceEEecChHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~ 261 (622)
||+++|++|++++.|+++++.
T Consensus 215 d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 215 DRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988663
No 108
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-41 Score=345.03 Aligned_cols=217 Identities=19% Similarity=0.230 Sum_probs=186.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+++| .+|+|.++|+++
T Consensus 1 ml~~~~l~~~~--~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 65 (271)
T PRK13638 1 MLATSDLWFRY--QDEPVLKGLNLDF-----SLSPVTGLVGAN-----GCGKSTLFMNLSGLLRP---QKGAVLWQGKPL 65 (271)
T ss_pred CeEEEEEEEEc--CCcccccceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CccEEEECCEEc
Confidence 46789999997 5667999999999 677788888877 89999999999999998 589999999987
Q ss_pred Cc------cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EG------KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~------~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
.. ..++.+|||+|++. .+...|+.||+.+...... ....+..++++++++.+||.+..++.+.+
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------ 136 (271)
T PRK13638 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG---VPEAEITRRVDEALTLVDAQHFRHQPIQC------ 136 (271)
T ss_pred ccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHhHhcCCchh------
Confidence 41 24678999999875 3455689999988654331 12334455688999999998888888766
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|
T Consensus 137 --LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~d~i~~l~~G 212 (271)
T PRK13638 137 --LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDI-DLIYEISDAVYVLRQG 212 (271)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999986 589999999996 6788899999999999
Q ss_pred ceEEecChHHHH
Q psy2519 250 RTAFIGSKDAAL 261 (622)
Q Consensus 250 ~iv~~G~~~~~~ 261 (622)
++++.|+++++.
T Consensus 213 ~i~~~g~~~~~~ 224 (271)
T PRK13638 213 QILTHGAPGEVF 224 (271)
T ss_pred EEEEeCCHHHHh
Confidence 999999998764
No 109
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.3e-41 Score=333.77 Aligned_cols=207 Identities=22% Similarity=0.343 Sum_probs=179.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.|. ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~-~~~~~l~~~sl~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~ 66 (214)
T cd03292 1 IEFINVTKTYP-NGTAALDGINISI-----SAGEFVFLVGPS-----GAGKSTLLKLIYKEELP---TSGTIRVNGQDVS 66 (214)
T ss_pred CEEEEEEEEeC-CCceeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEcc
Confidence 35789999873 2357999999999 677788888777 89999999999999998 5899999999875
Q ss_pred c-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 98 G-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 98 ~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. ..++.++|++|++.+++.+|++||+.+....+. ...++..++++++++.+||++..++.+++
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 136 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALPAE------- 136 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChhh-------
Confidence 3 246789999999999999999999998765432 12334456788999999998888888666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +|+|||++||++ +.+.++||++++|++|+
T Consensus 137 -LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 137 -LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVIALERGK 213 (214)
T ss_pred -cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCc
Confidence 999999999999999999999999999999999999999999999976 589999999996 67888999999999997
Q ss_pred e
Q psy2519 251 T 251 (622)
Q Consensus 251 i 251 (622)
+
T Consensus 214 ~ 214 (214)
T cd03292 214 L 214 (214)
T ss_pred C
Confidence 4
No 110
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-41 Score=345.52 Aligned_cols=219 Identities=25% Similarity=0.344 Sum_probs=188.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. ++..+++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~-~~~~~l~~vsl~i-----~~Ge~~~i~G~N-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 68 (277)
T PRK13652 3 LIETRDLCYSYS-GSKEALNNINFIA-----PRNSRIAVIGPN-----GAGKSTLFRHFNGILKP---TSGSVLIRGEPI 68 (277)
T ss_pred eEEEEEEEEEeC-CCCceeeEeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 367899999973 3456999999999 677788888877 89999999999999998 599999999987
Q ss_pred Cc----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.+|||+|++. .+...||.||+.+...... .+..+..++++++++.+||.+..++.+.+
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 137 (277)
T PRK13652 69 TKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG---LDEETVAHRVSSALHMLGLEELRDRVPHH-------- 137 (277)
T ss_pred CcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCCccc--------
Confidence 53 35678999999963 3446799999988654321 23344456788999999999888888766
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +++.+.|||+++|++|++
T Consensus 138 LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i 216 (277)
T PRK13652 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRI 216 (277)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999874589999999996 688899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 217 ~~~g~~~~~~ 226 (277)
T PRK13652 217 VAYGTVEEIF 226 (277)
T ss_pred EEECCHHHHh
Confidence 9999999875
No 111
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-40 Score=344.34 Aligned_cols=217 Identities=24% Similarity=0.278 Sum_probs=186.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. ++.++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|.++
T Consensus 1 ml~~~~l~~~~~-~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 66 (274)
T PRK13644 1 MIRLENVSYSYP-DGTPALENINLVI-----KKGEYIGIIGKN-----GSGKSTLALHLNGLLRP---QKGKVLVSGIDT 66 (274)
T ss_pred CEEEEEEEEEcC-CCCceeeeeEEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCEEC
Confidence 367899999973 3466999999999 678888888777 89999999999999998 589999999987
Q ss_pred Cc-----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 97 EG-----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
.. ..++.+||++|++. .++..||.||+.+...... .+..+..++++++++.+||.+..++.+++
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------- 136 (274)
T PRK13644 67 GDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLC---LPPIEIRKRVDRALAEIGLEKYRHRSPKT------- 136 (274)
T ss_pred CccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcC---CCHHHHHHHHHHHHHHCCCHHHhcCCccc-------
Confidence 42 34678999999975 4667899999998754331 23344456788999999999888888766
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||++ +++ +.||++++|++|+
T Consensus 137 -LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~-~~~-~~~d~v~~l~~G~ 212 (274)
T PRK13644 137 -LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNL-EEL-HDADRIIVMDRGK 212 (274)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHH-hhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999986 699999999996 566 5699999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 213 i~~~g~~~~~~ 223 (274)
T PRK13644 213 IVLEGEPENVL 223 (274)
T ss_pred EEEECCHHHHh
Confidence 99999998764
No 112
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-41 Score=346.30 Aligned_cols=222 Identities=21% Similarity=0.325 Sum_probs=189.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|+++.|..++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|....+|+|.++|+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i-----~~Ge~~~I~G~n-----GaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSI-----PRGSWTALIGHN-----GSGKSTISKLINGLLLPDDNPNSKITVDGITL 74 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcccCCCCCCCcEEEECCEEC
Confidence 57899999997433456999999999 677788888777 89999999999999988411139999999998
Q ss_pred Cc----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.+|||+|++. +++..||.||+.+...... .+.++..++++++++.+||.+..++.+.+
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-------- 143 (282)
T PRK13640 75 TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA---VPRPEMIKIVRDVLADVGMLDYIDSEPAN-------- 143 (282)
T ss_pred CcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC---CCHHHHHHHHHHHHHHCCChhHhcCCccc--------
Confidence 54 35678999999974 6778999999998654332 23445566789999999999888888666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||++ +++ ..||++++|++|++
T Consensus 144 LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~-~~~d~i~~l~~G~i 221 (282)
T PRK13640 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI-DEA-NMADQVLVLDDGKL 221 (282)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874599999999997 466 57999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 222 ~~~g~~~~~~ 231 (282)
T PRK13640 222 LAQGSPVEIF 231 (282)
T ss_pred EEeCCHHHHh
Confidence 9999998775
No 113
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=8.7e-41 Score=334.36 Aligned_cols=209 Identities=21% Similarity=0.285 Sum_probs=181.4
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.|. ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL-GGRQALQGVTFHM-----RPGEMAFLTGHS-----GAGKSTLLKLICGIERP---SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec-CCCeEEeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 57899999873 4567999999999 678888888887 89999999999999998 5999999999875
Q ss_pred c-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 98 G-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 98 ~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. ..++.++|++|++.+++.+||+||+.+...... ....+..++++++++.+++.+..++.+.+
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 137 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG---ASGDDIRRRVSAALDKVGLLDKAKNFPIQ------- 137 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCchh-------
Confidence 3 146789999999988899999999998754432 22334455678999999998877887666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||||+.+|++|+|||||+|||+.++.++.+.|+++++ +|.|+|++||++ +++.+.||++++|++|+
T Consensus 138 -LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 214 (222)
T PRK10908 138 -LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRMLTLSDGH 214 (222)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987 589999999996 68888999999999999
Q ss_pred eEE
Q psy2519 251 TAF 253 (622)
Q Consensus 251 iv~ 253 (622)
++.
T Consensus 215 i~~ 217 (222)
T PRK10908 215 LHG 217 (222)
T ss_pred Ecc
Confidence 864
No 114
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-41 Score=308.36 Aligned_cols=214 Identities=21% Similarity=0.296 Sum_probs=188.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
+.++|+++.| |..++|.+++++. .+|+..+++|| ||||||||+|.|.-+..| .+|+..+.|...+
T Consensus 3 irv~~in~~y--g~~q~lfdi~l~~-----~~getlvllgp-----sgagkssllr~lnlle~p---~sg~l~ia~~~fd 67 (242)
T COG4161 3 IQLNGINCFY--GAHQALFDITLDC-----PEGETLVLLGP-----SGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFD 67 (242)
T ss_pred eEEccccccc--ccchheeeeeecC-----CCCCEEEEECC-----CCCchHHHHHHHHHHhCC---CCCeEEecccccc
Confidence 5789999986 9999999999998 45556666655 589999999999998888 5999999887542
Q ss_pred --c--------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 98 --G--------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 98 --~--------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
. .+|+.+|+|||+..++|+|||.||+.-+...- .++++++.+.++.++++++.|.+.+|+.+-.
T Consensus 68 ~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv--~gl~~~qa~~~a~ellkrlrl~~~adr~plh---- 141 (242)
T COG4161 68 FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRV--LGLSKDQALARAEKLLKRLRLKPYADRYPLH---- 141 (242)
T ss_pred cccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHH--hCCCHHHHHHHHHHHHHHhccccccccCcee----
Confidence 1 37899999999999999999999997754221 1357778888999999999999999998555
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||+|||+|||||+++|++|++||||++|||.-..+++++|++++. .|.|-+++||.. +.+.+.+.||+.|.
T Consensus 142 ----lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev-~va~k~as~vvyme 215 (242)
T COG4161 142 ----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEV-EVARKTASRVVYME 215 (242)
T ss_pred ----cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeeh-hHHHhhhhheEeee
Confidence 999999999999999999999999999999999999999999999997 799999999996 67888999999999
Q ss_pred CCceEEecChH
Q psy2519 248 DSRTAFIGSKD 258 (622)
Q Consensus 248 ~G~iv~~G~~~ 258 (622)
+|+|++.|+.+
T Consensus 216 ~g~ive~g~a~ 226 (242)
T COG4161 216 NGHIVEQGDAS 226 (242)
T ss_pred cCeeEeecchh
Confidence 99999999876
No 115
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-40 Score=337.62 Aligned_cols=219 Identities=21% Similarity=0.280 Sum_probs=187.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ ++|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 2 ~i~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~ 66 (242)
T TIGR03411 2 ILYLEGLSVSF--DGFKALNDLSLYV-----DPGELRVIIGPN-----GAGKTTMMDVITGKTRP---DEGSVLFGGTDL 66 (242)
T ss_pred eEEEEeeEEEc--CCeEEeeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCeEEECCeec
Confidence 46789999987 5567999999999 678888888887 89999999999999998 489999999987
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC--c---cccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD--R---RVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
.. ..++.++|++|++.+++.+||+||+.++...... . ....++..++++++++.+|+.+..++.+++
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (242)
T TIGR03411 67 TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGL--- 143 (242)
T ss_pred CCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhh---
Confidence 53 1345799999999999999999999986432110 0 011233456788999999999888888777
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|
T Consensus 144 -----LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l 215 (242)
T TIGR03411 144 -----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDM-EFVRSIADKVTVL 215 (242)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999975 68999999996 6888999999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++..|+++++.
T Consensus 216 ~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 216 HQGSVLAEGSLDQVQ 230 (242)
T ss_pred ECCeEEeeCCHHHHh
Confidence 999999999988653
No 116
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-41 Score=338.70 Aligned_cols=215 Identities=20% Similarity=0.289 Sum_probs=185.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHY--GKIQALHEVSLHI-----NQGEIVTLIGAN-----GAGKTTLLGTLCGDPRA---TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEee--CCceeeeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHcCCCCC---CCceEEECCEec
Confidence 57789999986 5678999999999 678888888887 89999999999999998 589999999987
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh-CCCcccCCccCCcCCCCcc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~~~~~~~~ 170 (622)
.. ..++.++|++|++.+++.+||.||+.+..... ...+..++++++++.+ ++.+..++.+.+
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~------- 137 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAGT------- 137 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchhh-------
Confidence 53 14678999999999999999999998864321 1122334567788888 577666776655
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.+.|||+++|++|+
T Consensus 138 -LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 214 (237)
T PRK11614 138 -MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRGYVLENGH 214 (237)
T ss_pred -CCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999987 599999999996 68889999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 215 i~~~~~~~~~~ 225 (237)
T PRK11614 215 VVLEDTGDALL 225 (237)
T ss_pred EEeeCCHHHHh
Confidence 99999998764
No 117
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=344.98 Aligned_cols=219 Identities=21% Similarity=0.278 Sum_probs=187.4
Q ss_pred CcccCCcccccccc----ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 17 NEEVPNVDFSEIVG----SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 17 ~~~~~~~~~~~~~g----~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+++++||+++|..+ ++++++++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~i~ 70 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEV-----KKGEFLVILGRN-----GSGKSTIAKHMNALLIP---SEGKVYVD 70 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEEC
Confidence 57899999998432 357999999999 677788888777 89999999999999998 58999999
Q ss_pred CEecCc-----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 93 GKPVEG-----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 93 G~~~~~-----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
|+++.. ..++.+|||+|++. .+...||.||+.|...... .++.+.+++++++++.+||.+..++.+++
T Consensus 71 g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--- 144 (280)
T PRK13633 71 GLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLG---IPPEEIRERVDESLKKVGMYEYRRHAPHL--- 144 (280)
T ss_pred CEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcC---CCHHHHHHHHHHHHHHCCCHhHhhCCccc---
Confidence 998753 35788999999963 2334699999998764332 23344556789999999999888888776
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.. ||++++|
T Consensus 145 -----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~-~~~~~-~d~v~~l 217 (280)
T PRK13633 145 -----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM-EEAVE-ADRIIVM 217 (280)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHhc-CCEEEEE
Confidence 9999999999999999999999999999999999999999999999875699999999997 46654 9999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++..|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 218 DSGKVVMEGTPKEIF 232 (280)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999999875
No 118
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5.6e-41 Score=333.56 Aligned_cols=210 Identities=29% Similarity=0.410 Sum_probs=176.0
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 ~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~- 64 (213)
T cd03235 1 EVEDLTVSY--GGHPVLEDVSFEV-----KPGEFLAIVGPN-----GAGKSTLLKAILGLLKP---TSGSIRVFGKPLE- 64 (213)
T ss_pred CcccceeEE--CCEEeeecceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CCCEEEECCccHH-
Confidence 578999987 5567999999999 677888888777 89999999999999998 5899999998775
Q ss_pred cccccEEEEecCCCCC--CCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 99 KFRSACGFMYQHDLFS--PSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 99 ~~r~~igyV~Q~~~l~--~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
..++.++||+|++.+. +.+||+||+.+....... ......+..++++++++.+++.+..++.+++ ||||
T Consensus 65 ~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSgG 136 (213)
T cd03235 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGE--------LSGG 136 (213)
T ss_pred HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCccc--------CCHH
Confidence 3567899999998763 348999999886432110 0011123345788999999998878888766 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||++ +++.++||++++|++| +++.|
T Consensus 137 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 137 QQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999999999987 699999999996 6888899999999875 66554
No 119
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=9.6e-41 Score=335.08 Aligned_cols=214 Identities=22% Similarity=0.296 Sum_probs=177.8
Q ss_pred cccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++||++.|...+ .++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 68 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSI-----KKGETLGLVGES-----GSGKSTLARAILGLLKP---TSGSIIFDGKD 68 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEE
Confidence 56899999873211 27999999999 677788888777 89999999999999998 58999999998
Q ss_pred cCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHH-HHHHHHHhCCC-cccCCccCCc
Q psy2519 96 VEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL-INSLLIELGLM-NSQHTRIGSS 164 (622)
Q Consensus 96 ~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~v~~~ 164 (622)
+.. ..++.+||++|++ .+++.+||+||+.+........ ...+..+. ++++++.+++. +..++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 145 (228)
T cd03257 69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNRYPHE- 145 (228)
T ss_pred ccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhCCchh-
Confidence 753 2467899999997 5778899999998875443211 11122222 36889999995 567777666
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.||+++
T Consensus 146 -------LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~ 217 (228)
T cd03257 146 -------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVA 217 (228)
T ss_pred -------cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEE
Confidence 9999999999999999999999999999999999999999999999874489999999996 67888999999
Q ss_pred eecCCceEEec
Q psy2519 245 LLADSRTAFIG 255 (622)
Q Consensus 245 ~L~~G~iv~~G 255 (622)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998764
No 120
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-40 Score=342.64 Aligned_cols=221 Identities=21% Similarity=0.251 Sum_probs=187.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 11 ~l~i~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRV--PGRTLLHPLSLTF-----PAGKVTGLIGHN-----GSGKSTLLKMLGRHQPP---SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEE--CCEEEEeeeeeEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CCCEEEECCEeh
Confidence 35789999986 5668999999999 678888888777 89999999999999988 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. .+++.++|++|+..+++.+||.||+.+....... ......+..++++++++.++|.+..++.+++
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 147 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDS-------- 147 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc--------
Confidence 43 3567899999998888999999999875321100 0001122345688999999998888888776
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +++.+.||++++|++|++
T Consensus 148 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i 226 (265)
T PRK10575 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEM 226 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999874589999999996 688899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
+..|+++++.
T Consensus 227 ~~~~~~~~~~ 236 (265)
T PRK10575 227 IAQGTPAELM 236 (265)
T ss_pred EEecCHHHhc
Confidence 9999887653
No 121
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-40 Score=343.77 Aligned_cols=219 Identities=23% Similarity=0.325 Sum_probs=188.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|++++|..++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEI-----NEGEYVAILGHN-----GSGKSTISKILTGLLKP---QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCEec
Confidence 57899999997434567999999999 677788888777 89999999999999998 589999999998
Q ss_pred Cc----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. .+++.+||++|++. .++.+||+||+.+...... ...++.+++++++++.+||.+..++.+.+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 142 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKKVGMEDYLDKEPQN-------- 142 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCccc--------
Confidence 53 35778999999974 6778999999998754321 12334456788999999999888888776
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++.++|||++||++ +++ ..||++++|++|++
T Consensus 143 LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~-~~~d~v~~l~~G~i 220 (271)
T PRK13632 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM-DEA-ILADKVIVFSEGKL 220 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech-hHH-hhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874469999999997 456 47999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
+..|+++++.
T Consensus 221 ~~~g~~~~~~ 230 (271)
T PRK13632 221 IAQGKPKEIL 230 (271)
T ss_pred EEecCHHHHh
Confidence 9999988764
No 122
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.3e-40 Score=355.55 Aligned_cols=208 Identities=23% Similarity=0.291 Sum_probs=184.0
Q ss_pred ccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE----ecCc----c-
Q psy2519 29 VGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK----PVEG----K- 99 (622)
Q Consensus 29 ~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~----~~~~----~- 99 (622)
+|...+++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+ ++.. .
T Consensus 34 ~g~~~~l~~vsf~i-----~~Gei~~I~G~n-----GsGKSTLlr~L~Gl~~p---~~G~I~idG~~~~~~i~~~~~~~l 100 (382)
T TIGR03415 34 TGLVVGVANASLDI-----EEGEICVLMGLS-----GSGKSSLLRAVNGLNPV---SRGSVLVKDGDGSIDVANCDAATL 100 (382)
T ss_pred hCCEEEEEeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CCcEEEECCEecccccccCCHHHH
Confidence 58888999999999 677788888776 89999999999999999 5899999997 3321 1
Q ss_pred --c-cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 100 --F-RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 100 --~-r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
. ++.+|||||++.++|.+||.||+.++..... .++.+.+++++++++.+||.+..++++++ |||||
T Consensus 101 ~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g---~~~~~~~~~a~e~le~vgL~~~~~~~~~~--------LSgGq 169 (382)
T TIGR03415 101 RRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQG---MPEAERRKRVDEQLELVGLAQWADKKPGE--------LSGGM 169 (382)
T ss_pred HHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhh--------CCHHH
Confidence 2 3689999999999999999999999865432 23455667889999999999888888766 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecC
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++|||+ +++.+++||+++|++|+++..|+
T Consensus 170 ~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 170 QQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGT 248 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999875699999999996 68889999999999999999999
Q ss_pred hHHHH
Q psy2519 257 KDAAL 261 (622)
Q Consensus 257 ~~~~~ 261 (622)
++++.
T Consensus 249 ~~ei~ 253 (382)
T TIGR03415 249 PEEIV 253 (382)
T ss_pred HHHHh
Confidence 98875
No 123
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.9e-41 Score=331.53 Aligned_cols=206 Identities=26% Similarity=0.366 Sum_probs=175.6
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++||+++|..++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i-----~~G~~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~ 67 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTI-----KKGEFVLIVGPN-----GSGKSTLLRLLNGLLGP---TSGEVLVDGKDLTK 67 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCEEccc
Confidence 478999987322267999999999 677788888887 89999999999999998 58999999998753
Q ss_pred ----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 99 ----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
..++.++|++|++. .++.+||+||+.+...... ....+..++++++++.++|.+..++.+++ ||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS 136 (211)
T cd03225 68 LSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG---LPEEEIEERVEEALELVGLEGLRDRSPFT--------LS 136 (211)
T ss_pred CCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCcHhhhcCCccc--------CC
Confidence 35678999999974 4678899999988654321 12233445688999999998888888666 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|+
T Consensus 137 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 137 GGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-EGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999987 599999999996 68888999999999985
No 124
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-41 Score=341.71 Aligned_cols=209 Identities=22% Similarity=0.318 Sum_probs=182.8
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|.+
T Consensus 11 ~~l~i~~l~~~~--~~~~il~~isl~i-----~~Ge~~~I~G~N-----GsGKSTLlk~l~Gl~~p---~~G~i~~~g~~ 75 (257)
T PRK11247 11 TPLLLNAVSKRY--GERTVLNQLDLHI-----PAGQFVAVVGRS-----GCGKSTLLRLLAGLETP---SAGELLAGTAP 75 (257)
T ss_pred CcEEEEEEEEEE--CCcceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeEEEECCEE
Confidence 346789999987 5667999999999 677888888777 89999999999999998 58999999987
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
+. ..++.++|++|++.+++.+||+||+.+... . ...++++++++.+||.+..++.+.+ ||||
T Consensus 76 ~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~~~~--------LSgG 137 (257)
T PRK11247 76 LA-EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------G--QWRDAALQALAAVGLADRANEWPAA--------LSGG 137 (257)
T ss_pred HH-HhhCceEEEecCccCCCCCcHHHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCChhh--------CCHH
Confidence 64 356789999999999999999999988531 0 1234678899999998888888666 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|++++.|
T Consensus 138 qkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~ 216 (257)
T PRK11247 138 QKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDL 216 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999999999765689999999996 5788899999999999999887
Q ss_pred ChH
Q psy2519 256 SKD 258 (622)
Q Consensus 256 ~~~ 258 (622)
+.+
T Consensus 217 ~~~ 219 (257)
T PRK11247 217 TVD 219 (257)
T ss_pred ccc
Confidence 654
No 125
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.2e-40 Score=342.15 Aligned_cols=221 Identities=20% Similarity=0.261 Sum_probs=187.6
Q ss_pred CcccCCcccccccc-------ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 17 NEEVPNVDFSEIVG-------SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-------~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
+++++||+++|..+ +.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i 68 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSI-----EEGETVGLLGRS-----GCGKSTLARLLLGLEKP---AQGTV 68 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEE
Confidence 46789999998432 467999999999 678888888777 89999999999999998 58999
Q ss_pred EECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCC
Q psy2519 90 RVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHT 159 (622)
Q Consensus 90 ~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 159 (622)
.++|+++.. ..++.+||++|++ .+++.+||+||+.+...... .....+..++++++++.+||. +..++
T Consensus 69 ~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 69 SFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred EECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 999998753 1467899999986 47788999999987653211 112233456788999999996 66777
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~ 239 (622)
.+++ ||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +.+.++
T Consensus 147 ~~~~--------LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~ 217 (265)
T TIGR02769 147 LPRQ--------LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSF 217 (265)
T ss_pred Chhh--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHH
Confidence 7666 9999999999999999999999999999999999999999999999874589999999996 678889
Q ss_pred ccceeeecCCceEEecChHHHH
Q psy2519 240 FDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
||++++|++|++++.|+++++.
T Consensus 218 ~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 218 CQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred hcEEEEEeCCEEEEECCHHHHc
Confidence 9999999999999999998764
No 126
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=355.51 Aligned_cols=209 Identities=24% Similarity=0.367 Sum_probs=182.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
|+++ ||+++| |+..+ ++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 1 ~l~~-~l~k~~--~~~~~--~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~iaGl~~p---~~G~I~~~g~~~ 62 (352)
T PRK11144 1 MLEL-NFKQQL--GDLCL--TVNLTL-----PAQGITAIFGRS-----GAGKTSLINAISGLTRP---QKGRIVLNGRVL 62 (352)
T ss_pred CeEE-EEEEEe--CCEEE--EEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEc
Confidence 3566 888886 55433 788888 577788888776 89999999999999998 489999999987
Q ss_pred Cc--------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 97 EG--------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 97 ~~--------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
.. ..++.+|||+|+..++|.+||+||+.++... ...++++++++.+||.+..++.+.+
T Consensus 63 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------~~~~~~~~~l~~~gl~~~~~~~~~~----- 128 (352)
T PRK11144 63 FDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK---------SMVAQFDKIVALLGIEPLLDRYPGS----- 128 (352)
T ss_pred cccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh---------hhHHHHHHHHHHcCCchhhhCCccc-----
Confidence 42 2467899999999999999999999986421 1235678999999999888888766
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|+|++|||+ +++.++||++++|++
T Consensus 129 ---LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~ 204 (352)
T PRK11144 129 ---LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQ 204 (352)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999875589999999996 688999999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|+++..|+++++.
T Consensus 205 G~i~~~g~~~~i~ 217 (352)
T PRK11144 205 GKVKAFGPLEEVW 217 (352)
T ss_pred CEEEEecCHHHHH
Confidence 9999999999875
No 127
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=337.64 Aligned_cols=215 Identities=21% Similarity=0.295 Sum_probs=185.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 3 l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFY--GAHQALFDITLDC-----PQGETLVLLGPS-----GAGKSSLLRVLNLLEMP---RSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEE--CCeeeEeeeeeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEecc
Confidence 5789999987 5668999999999 677788888776 89999999999999998 5899999999862
Q ss_pred ------c----cccccEEEEecCCCCCCCCCHHHHHHHH-HHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 98 ------G----KFRSACGFMYQHDLFSPSLTVYEHLYFM-ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 98 ------~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
. ..++.++|++|++.+++.+||.||+.+. ..... ....+..+++.++++.+||.+..++.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--- 141 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLG---LSKDQALARAEKLLERLRLKPYADRFPLH--- 141 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh---
Confidence 1 2467899999999999999999999753 22221 12233456788999999998888888766
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|++||++ .++.+++|++++|
T Consensus 142 -----LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~~~~~d~i~~l 214 (242)
T PRK11124 142 -----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEV-EVARKTASRVVYM 214 (242)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999986 699999999996 6788899999999
Q ss_pred cCCceEEecChHHH
Q psy2519 247 ADSRTAFIGSKDAA 260 (622)
Q Consensus 247 ~~G~iv~~G~~~~~ 260 (622)
++|++++.|+++++
T Consensus 215 ~~g~i~~~~~~~~~ 228 (242)
T PRK11124 215 ENGHIVEQGDASCF 228 (242)
T ss_pred ECCEEEEeCCHHHh
Confidence 99999999988754
No 128
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=351.23 Aligned_cols=226 Identities=18% Similarity=0.199 Sum_probs=186.0
Q ss_pred CcccCCccccccc--cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-CceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIV--GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD-CIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~--g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~-~~~~G~I~~~G 93 (622)
.++++||+++|.. |...+++++|+++ .+|+.+.|+|+| |||||||+++|+|++++. ...+|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i-----~~Ge~~~ivG~s-----GsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g 72 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTL-----TEGEIRGLVGES-----GSGKSLIAKAICGVTKDNWRVTADRMRFDD 72 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHHccCCCCCCCcceEEEECC
Confidence 4689999999843 4567999999999 677788888776 899999999999999742 12589999999
Q ss_pred EecCc----c----ccccEEEEecCCC--CCCCCCHHHHHHHHHHcCC--Ccc-ccHHHHHHHHHHHHHHhCCCcc---c
Q psy2519 94 KPVEG----K----FRSACGFMYQHDL--FSPSLTVYEHLYFMALLKL--DRR-VKAYQRIALINSLLIELGLMNS---Q 157 (622)
Q Consensus 94 ~~~~~----~----~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~--~~~-~~~~~~~~~v~~~l~~lgL~~~---~ 157 (622)
+++.. + .++.++||||++. +.|.+||.+++........ ... ....+.++++.++++.+||.+. .
T Consensus 73 ~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~ 152 (330)
T PRK15093 73 IDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM 152 (330)
T ss_pred EECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH
Confidence 98753 1 2357999999975 7899999999986432111 000 0112345678899999999753 4
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++++.+ |||||||||+|||||+.+|++||+||||+|||+.++.++.++|++++++.|.|||++|||+ ..+.
T Consensus 153 ~~~p~~--------LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~ 223 (330)
T PRK15093 153 RSFPYE--------LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLS 223 (330)
T ss_pred hCCchh--------CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHH
Confidence 566444 9999999999999999999999999999999999999999999999875699999999996 6888
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++|||+++|++|++++.|+++++.
T Consensus 224 ~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 224 QWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999998764
No 129
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=342.56 Aligned_cols=217 Identities=21% Similarity=0.316 Sum_probs=186.8
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.|. ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-~~~~~l~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP-DGTEALKGINFKA-----EKGEMVALLGPN-----GAGKSTLFLHFNGILKP---TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC-CCCeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CccEEEECCEECc
Confidence 57899999973 3457999999999 678888888887 89999999999999998 4899999999874
Q ss_pred c------cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 98 G------KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 98 ~------~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. ..++.+||++|++. .+...||.||+.+...... ...++..+++.++++.+||.+..++.+++
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~------- 137 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG---LSKEEVEKRVKEALKAVGMEGFENKPPHH------- 137 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchhhcCChhh-------
Confidence 2 24678999999963 3345799999988643221 23344556788999999999888888776
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++++|||||+|||+.++.++.+.|+++++ +|.|||++||++ +++.++||++++|++|+
T Consensus 138 -LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~-~~~~~~~d~i~~l~~G~ 214 (275)
T PRK13639 138 -LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDV-DLVPVYADKVYVMSDGK 214 (275)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987 599999999996 67888999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 215 i~~~g~~~~~~ 225 (275)
T PRK13639 215 IIKEGTPKEVF 225 (275)
T ss_pred EEEeCCHHHHh
Confidence 99999999875
No 130
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1e-40 Score=342.18 Aligned_cols=223 Identities=22% Similarity=0.311 Sum_probs=188.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|+...+|+|.++|+++
T Consensus 4 ~l~~~nl~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 4 IIRVEKLAKTF--NQHQALHAVDLNI-----HHGEMVALLGPS-----GSGKSTLLRHLSGLITGDKSAGSHIELLGRTV 71 (262)
T ss_pred EEEEeeEEEEe--CCeEEEecceEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence 47899999986 6678999999999 677888888777 89999999999999987421369999999987
Q ss_pred Cc---------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-----cccHHHHHHHHHHHHHHhCCCcccCCccC
Q psy2519 97 EG---------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-----RVKAYQRIALINSLLIELGLMNSQHTRIG 162 (622)
Q Consensus 97 ~~---------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~v~ 162 (622)
.. ..++.++|++|++.+++.+||.||+.+......+. .....+.+++++++++.+||.+..++.++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (262)
T PRK09984 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS 151 (262)
T ss_pred ccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 42 23567999999999999999999998764211000 00112344578899999999888888877
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.||+
T Consensus 152 ~--------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~ 222 (262)
T PRK09984 152 T--------LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCER 222 (262)
T ss_pred c--------cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCE
Confidence 6 9999999999999999999999999999999999999999999999875689999999996 678899999
Q ss_pred eeeecCCceEEecChHHH
Q psy2519 243 IILLADSRTAFIGSKDAA 260 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~ 260 (622)
+++|++|++++.|+++++
T Consensus 223 i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 223 IVALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999998753
No 131
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9e-41 Score=336.00 Aligned_cols=213 Identities=24% Similarity=0.320 Sum_probs=183.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYY--GQSHILRGVSLEV-----PKGEVTCVLGRN-----GVGKTTLLKTLMGLLPV---KSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEe--CCeEEecceeeEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCEEEECCEECC
Confidence 3678999986 5668999999999 678888888877 89999999999999998 5899999999875
Q ss_pred c----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-CCcccCCccCCcCCCCccc
Q psy2519 98 G----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-LMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v~~~~~~~~~g 171 (622)
. . .++.+||++|++.+++.+|+.||+.+...... .. ..+.++++++.++ +.+..++.+.+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~~~-------- 131 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRGGD-------- 131 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCChhh--------
Confidence 3 1 35679999999999999999999998754331 11 1233567788876 56667777666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++++|||||+|||+.++.++.+.|++++++.|+|||++||++ +++.++||+++++++|++
T Consensus 132 LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i 210 (230)
T TIGR03410 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRV 210 (230)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874589999999996 688889999999999999
Q ss_pred EEecChHHH
Q psy2519 252 AFIGSKDAA 260 (622)
Q Consensus 252 v~~G~~~~~ 260 (622)
+..|+++++
T Consensus 211 ~~~~~~~~~ 219 (230)
T TIGR03410 211 VASGAGDEL 219 (230)
T ss_pred EEECCHHHc
Confidence 999998865
No 132
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.6e-40 Score=332.14 Aligned_cols=209 Identities=24% Similarity=0.353 Sum_probs=177.8
Q ss_pred cccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++||+++|..+ ..++++++|+++ ++|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i-----~~G~~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~ 68 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSI-----GKGEIVAIVGSS-----GSGKSTLLHLLGGLDNP---TSGEVLFNGQS 68 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEE
Confidence 4689999997422 257999999999 678888888887 89999999999999998 59999999998
Q ss_pred cCc----c---cc-ccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 96 VEG----K---FR-SACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 96 ~~~----~---~r-~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
+.. . ++ +.++||+|++.+++.+||+||+.+....+. ....+..+++.++++.+||.+..++.+++
T Consensus 69 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 141 (221)
T TIGR02211 69 LSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRPSE---- 141 (221)
T ss_pred hhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh----
Confidence 753 1 22 679999999999999999999998754332 12233455678999999998888888666
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++. .+|++++|+
T Consensus 142 ----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~-~~d~v~~l~ 215 (221)
T TIGR02211 142 ----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELAK-KLDRVLEMK 215 (221)
T ss_pred ----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHh-hcCEEEEEe
Confidence 9999999999999999999999999999999999999999999999875589999999997 4664 589999999
Q ss_pred CCceE
Q psy2519 248 DSRTA 252 (622)
Q Consensus 248 ~G~iv 252 (622)
+|+++
T Consensus 216 ~G~i~ 220 (221)
T TIGR02211 216 DGQLF 220 (221)
T ss_pred CCEec
Confidence 99875
No 133
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.7e-40 Score=354.32 Aligned_cols=209 Identities=23% Similarity=0.359 Sum_probs=182.1
Q ss_pred CccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc---
Q psy2519 22 NVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--- 98 (622)
Q Consensus 22 ~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--- 98 (622)
||+++| |+..+ ++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++..
T Consensus 4 ~l~~~~--~~~~~--~isl~i-----~~Gei~~l~G~n-----GsGKSTLl~~iaGl~~p---~~G~I~~~g~~i~~~~~ 66 (354)
T TIGR02142 4 RFSKRL--GDFSL--DADFTL-----PGQGVTAIFGRS-----GSGKTTLIRLIAGLTRP---DEGEIVLNGRTLFDSRK 66 (354)
T ss_pred EEEEEE--CCEEE--EEEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEECccCcc
Confidence 677775 66544 888888 577788888776 89999999999999998 58999999998742
Q ss_pred -----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 99 -----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 99 -----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
..++.+|||+|++.+++.+||+||+.|+.... ...+..++++++++.+||.+..++.+.+ ||
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------LS 133 (354)
T TIGR02142 67 GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGR--------LS 133 (354)
T ss_pred ccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhh--------CC
Confidence 24678999999999999999999999875432 1233455788999999999888888776 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
|||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|+|++||++ +++.+++|++++|++|+++.
T Consensus 134 gGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~ 212 (354)
T TIGR02142 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAA 212 (354)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999875589999999996 68889999999999999999
Q ss_pred ecChHHHH
Q psy2519 254 IGSKDAAL 261 (622)
Q Consensus 254 ~G~~~~~~ 261 (622)
.|+++++.
T Consensus 213 ~g~~~~~~ 220 (354)
T TIGR02142 213 AGPIAEVW 220 (354)
T ss_pred ECCHHHHh
Confidence 99998765
No 134
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-40 Score=340.88 Aligned_cols=219 Identities=20% Similarity=0.247 Sum_probs=187.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|++++|..+..++++++|+++ ++|+.++|+|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i-----~~Ge~~~I~G~n-----GsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNI-----PKGQWTSIVGHN-----GSGKSTIAKLMIGIEKV---KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 47899999997422346899999999 678888888777 89999999999999998 589999999987
Q ss_pred Cc----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.+||++|++. +++..|+.+|+.+...... ...++..++++++++.+++.+..++.+.+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 142 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA---VPYDEMHRRVSEALKQVDMLERADYEPNA-------- 142 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCCccc--------
Confidence 53 35778999999974 7788899999988754322 12334456788999999999888888666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.. |||+++|++|++
T Consensus 143 LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G~i 220 (269)
T PRK13648 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKGTV 220 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874589999999997 56654 999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 221 ~~~g~~~~~~ 230 (269)
T PRK13648 221 YKEGTPTEIF 230 (269)
T ss_pred EEecCHHHHh
Confidence 9999998764
No 135
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=331.06 Aligned_cols=209 Identities=25% Similarity=0.358 Sum_probs=177.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| ++.. .++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~--~~~~--~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~ 63 (211)
T cd03298 1 VRLDKIRFSY--GEQP--MHFDLTF-----AQGEITAIVGPS-----GSGKSTLLNLIAGFETP---QSGRVLINGVDVT 63 (211)
T ss_pred CEEEeEEEEe--CCEe--cceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEcC
Confidence 3678999986 4443 2888888 577788888887 89999999999999998 5899999999875
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.+||++|++.+++.+||+||+.+....... . .++.+++++++++.+||.+..++.+.+ ||||
T Consensus 64 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 132 (211)
T cd03298 64 AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK--L-TAEDRQAIEVALARVGLAGLEKRLPGE--------LSGG 132 (211)
T ss_pred cCCHhHccEEEEecccccCCCCcHHHHHhcccccccC--c-cHHHHHHHHHHHHHcCCHHHHhCCccc--------CCHH
Confidence 4 2457899999999999999999999886432211 1 123345688999999998888888666 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|+++..|
T Consensus 133 ~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 133 ERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999999875689999999996 6888899999999999998754
No 136
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.1e-40 Score=332.58 Aligned_cols=217 Identities=33% Similarity=0.512 Sum_probs=183.9
Q ss_pred CcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC---CCCceeeEEEE
Q psy2519 17 NEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI---DDCIIDGDIRV 91 (622)
Q Consensus 17 ~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~---~~~~~~G~I~~ 91 (622)
..+++||++.|+.- .+++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+ | .+|+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLlk~l~G~~~~~~~---~~G~i~~ 69 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHV-----ESGQVMAILGSS-----GSGKTTLLDAISGRVEGGGT---TSGQILF 69 (226)
T ss_pred cceeecceeeeecCccccccccCceEEE-----cCCeEEEEECCC-----CCCHHHHHHHHhCccCCCCC---CceEEEE
Confidence 35689999998422 368999999999 677788888777 8999999999999998 6 5899999
Q ss_pred CCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHH-HHHHhCCCcccCCccCCcCCCCc
Q psy2519 92 NGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS-LLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 92 ~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
+|+++.. ..++.+||++|++.+++.+||+||+.+......+.........+++++ .++.+++.+..++.+++
T Consensus 70 ~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------ 143 (226)
T cd03234 70 NGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKG------ 143 (226)
T ss_pred CCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccC------
Confidence 9998764 467889999999999999999999998765432211122223334555 89999998888887766
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|++||++..++.+.||++++|++|
T Consensus 144 --LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 144 --ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred --cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999987 58999999999645789999999999999
Q ss_pred ceEEec
Q psy2519 250 RTAFIG 255 (622)
Q Consensus 250 ~iv~~G 255 (622)
++++.|
T Consensus 221 ~i~~~g 226 (226)
T cd03234 221 EIVYSG 226 (226)
T ss_pred EEEecC
Confidence 999865
No 137
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.2e-40 Score=330.91 Aligned_cols=207 Identities=24% Similarity=0.352 Sum_probs=179.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~~s~~i-----~~G~~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSF--GDFHVLKGIDLTV-----KKGEVVVIIGPS-----GSGKSTLLRCINLLEEP---DSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEE--CCeEeecCceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEECC
Confidence 3678999986 5577999999999 678888888887 89999999999999998 5899999999873
Q ss_pred c------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 98 G------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
. ..++.++|++|++.+++.+|+.||+.+...... .....+..++++++++.+|+.+..++.+.+
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 135 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQ-------- 135 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCccc--------
Confidence 2 256789999999999999999999988643211 112334456788999999998888888666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++
T Consensus 136 LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 136 LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999999999987 689999999996 688899999999999975
No 138
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=342.77 Aligned_cols=222 Identities=18% Similarity=0.237 Sum_probs=188.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|++
T Consensus 6 ~~l~i~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGY--GKYTVAENLTVEI-----PDGHFTAIIGPN-----GCGKSTLLRTLSRLMTP---AHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEE--CCEEEeeecceEE-----CCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CCcEEEECCEE
Confidence 356789999997 5677999999999 677788888777 89999999999999998 58999999998
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
+.. ..++.+||++|++.+++.+||+||+.+......+ .....+...++++++++.+||.+..++.+.+
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 143 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDT------- 143 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc-------
Confidence 753 3456899999999999999999999875311100 0001122345678999999998888888766
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||++ +++.++||++++|++|+
T Consensus 144 -LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~ 221 (265)
T PRK10253 144 -LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGK 221 (265)
T ss_pred -CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999874589999999996 68889999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 222 i~~~g~~~~~~ 232 (265)
T PRK10253 222 IVAQGAPKEIV 232 (265)
T ss_pred EEEeCCHHHHh
Confidence 99999988764
No 139
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=340.39 Aligned_cols=219 Identities=24% Similarity=0.330 Sum_probs=186.9
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ ++|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 3 l~~~~l~~~~--~~~~il~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGY--GTKRILNDLSLSL-----PTGKITALIGPN-----GCGKSTLLKCFARLLTP---QSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEE--CCEEEEeeeeeEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCcCC---CCcEEEECCEEhH
Confidence 6789999986 6678999999999 677788888887 89999999999999988 5899999999874
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
. ..++.+||++|+..+++.+|+.||+.++...... ......+..++++++++.+||.+..++.+++ |
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------L 139 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD--------L 139 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCccc--------C
Confidence 3 3567799999999888999999999885311000 0011123345678999999998888888766 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|+++
T Consensus 140 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~ 217 (255)
T PRK11231 140 SGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDL-NQASRYCDHLVVLANGHVM 217 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHhcCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999999999987 589999999996 6888999999999999999
Q ss_pred EecChHHHH
Q psy2519 253 FIGSKDAAL 261 (622)
Q Consensus 253 ~~G~~~~~~ 261 (622)
..|+++++.
T Consensus 218 ~~~~~~~~~ 226 (255)
T PRK11231 218 AQGTPEEVM 226 (255)
T ss_pred EEcCHHHhc
Confidence 999887653
No 140
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.1e-40 Score=340.75 Aligned_cols=222 Identities=19% Similarity=0.275 Sum_probs=188.2
Q ss_pred CCcccCCccccccc-------cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeE
Q psy2519 16 NNEEVPNVDFSEIV-------GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGD 88 (622)
Q Consensus 16 ~~~~~~~~~~~~~~-------g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~ 88 (622)
.+++++||+++|.. |+.++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~i~G~N-----GsGKSTLl~~l~Gl~~p---~~G~ 69 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTL-----REGQTLAIIGEN-----GSGKSTLAKMLAGMIEP---TSGE 69 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEe-----cCCCEEEEEcCC-----CCCHHHHHHHHhCCCCC---CCCE
Confidence 35789999999842 2357999999999 678888888887 89999999999999998 5899
Q ss_pred EEECCEecCc----cccccEEEEecCCC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCcc
Q psy2519 89 IRVNGKPVEG----KFRSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRI 161 (622)
Q Consensus 89 I~~~G~~~~~----~~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 161 (622)
|.++|+++.. ..++.+|||+|++. +++.+||.|++.+..+.... ....+..++++++++.+||. +..++.+
T Consensus 70 i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 147 (267)
T PRK15112 70 LLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD--LEPEQREKQIIETLRQVGLLPDHASYYP 147 (267)
T ss_pred EEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCCChHHHhcCc
Confidence 9999998753 23467999999874 67889999999887654321 12334456788999999994 5667776
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
.+ ||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +++.++||
T Consensus 148 ~~--------LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d 218 (267)
T PRK15112 148 HM--------LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISD 218 (267)
T ss_pred hh--------cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcC
Confidence 65 9999999999999999999999999999999999999999999999875589999999996 68888999
Q ss_pred ceeeecCCceEEecChHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~ 261 (622)
++++|++|+++..|+++++.
T Consensus 219 ~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 219 QVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred EEEEEECCEEEecCCHHHHh
Confidence 99999999999999888664
No 141
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-40 Score=334.77 Aligned_cols=216 Identities=20% Similarity=0.328 Sum_probs=184.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| ++.. .++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 1 ~l~~~~l~~~~--~~~~--~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 63 (232)
T PRK10771 1 MLKLTDITWLY--HHLP--MRFDLTV-----ERGERVAILGPS-----GAGKSTLLNLIAGFLTP---ASGSLTLNGQDH 63 (232)
T ss_pred CeEEEEEEEEE--CCcc--ceeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCeec
Confidence 35789999997 3333 3788888 578888888887 89999999999999998 589999999987
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.++|++|++.+++.+|+.||+.+...... ... +...+++.++++.+||.+..++.+.+ |||
T Consensus 64 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 132 (232)
T PRK10771 64 TTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KLN-AAQREKLHAIARQMGIEDLLARLPGQ--------LSG 132 (232)
T ss_pred CcCChhhccEEEEecccccccCCcHHHHHhccccccc--CCC-HHHHHHHHHHHHHcCcHHHHhCCccc--------CCH
Confidence 54 235679999999999999999999987532111 111 23355688999999998888888766 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.||++++|++|++++.
T Consensus 133 G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~ 211 (232)
T PRK10771 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWD 211 (232)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875589999999996 678889999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 212 g~~~~~~ 218 (232)
T PRK10771 212 GPTDELL 218 (232)
T ss_pred CCHHHHH
Confidence 9988664
No 142
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=336.59 Aligned_cols=221 Identities=23% Similarity=0.318 Sum_probs=185.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+|. ...+|+|.++|+
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 3 KIEIRDLKVSF--GQVEVLDGVNLEI-----PDNTITALMGPS-----GSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred eEEEEeeEEEE--CCeeeeecceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 46889999986 5667999999999 677788888777 899999999999998741 115899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCcCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~~~ 166 (622)
++.. .+++.+||++|++.+++.+||.||+.+....... .....+..+++.++++.+||.+ ..++.+.+
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~--- 146 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPAGK--- 146 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCccc---
Confidence 8753 3567899999999889999999999987543211 0122344567889999999864 34666555
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||++ +++.+.||++++|
T Consensus 147 -----LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i~~l 218 (250)
T PRK14247 147 -----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFP-QQAARISDYVAFL 218 (250)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999953 79999999996 5788899999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++..|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 219 YKGQIVEWGPTREVF 233 (250)
T ss_pred ECCeEEEECCHHHHH
Confidence 999999999988764
No 143
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-40 Score=340.84 Aligned_cols=217 Identities=22% Similarity=0.311 Sum_probs=184.1
Q ss_pred cccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||+++|..++ .++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~Gl~~p---~~G~i~~~g~ 69 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTI-----EDGSYTAFIGHT-----GSGKSTIMQLLNGLHVP---TQGSVRVDDT 69 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCE
Confidence 57899999974222 46999999999 677888888887 89999999999999998 5899999999
Q ss_pred ecCc--------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCC
Q psy2519 95 PVEG--------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~--------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~ 163 (622)
++.. ..++.+||++|++ .+++ .||+||+.+...... ...++..++++++++.+||. +..++.+++
T Consensus 70 ~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 145 (280)
T PRK13649 70 LITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFG---VSQEEAEALAREKLALVGISESLFEKNPFE 145 (280)
T ss_pred EccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCCccc
Confidence 8742 2467899999986 4554 699999998754321 12334456688999999997 456777666
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++
T Consensus 146 --------LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~i 215 (280)
T PRK13649 146 --------LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADFV 215 (280)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999987 589999999996 6788899999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 144
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4e-40 Score=333.90 Aligned_cols=219 Identities=21% Similarity=0.207 Sum_probs=183.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~~~~G~I~~~G~~ 95 (622)
++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+. +| .+|+|.++|++
T Consensus 1 l~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~ 65 (243)
T TIGR01978 1 LKIKDLHVSV--EDKEILKGVNLTV-----KKGEIHAIMGPN-----GSGKSTLSKTIAGHPSYEV---TSGTILFKGQD 65 (243)
T ss_pred CeEeeEEEEE--CCEEEEeccceEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCCCC---CcceEEECCEe
Confidence 3689999997 5677999999999 677788888777 899999999999995 56 58999999998
Q ss_pred cCc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC--c--cccHHHHHHHHHHHHHHhCCC-cccCCccC-Cc
Q psy2519 96 VEG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD--R--RVKAYQRIALINSLLIELGLM-NSQHTRIG-SS 164 (622)
Q Consensus 96 ~~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~--~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~~ 164 (622)
+.. . .+..++||+|++.+++.+|++|++.+....... . .....+..++++++++.+||. +..++.+. +
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 144 (243)
T TIGR01978 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEG- 144 (243)
T ss_pred cCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccC-
Confidence 753 1 244599999999999999999999886543210 0 012233346788999999997 45666654 3
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh-ccce
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKI 243 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~-~D~v 243 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|.|||++||++ +++.+. ||++
T Consensus 145 -------LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~-~~~~~~~~d~i 215 (243)
T TIGR01978 145 -------FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQ-RLLNYIKPDYV 215 (243)
T ss_pred -------cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecH-HHHHhhcCCeE
Confidence 999999999999999999999999999999999999999999999986 689999999996 677777 8999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 216 HVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEEeCCEEEEecCHHHhc
Confidence 999999999999987543
No 145
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=337.50 Aligned_cols=218 Identities=20% Similarity=0.293 Sum_probs=183.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+|.. ..+|+|.++|+
T Consensus 12 ~l~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 79 (258)
T PRK14268 12 QIKVENLNLWY--GEKQALKNVSMQI-----PKNSVTALIGPS-----GCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGE 79 (258)
T ss_pred eEEEeeeEEEe--CCeeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCcccCCCcceEEEECCE
Confidence 57789999986 6677999999999 677788888777 8999999999999987510 14899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++ +||+||+.+...... .+.++..++++++++.+++. +..++.+++
T Consensus 80 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 154 (258)
T PRK14268 80 DIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG---ANKKDLDGVVENALRSAALWDETSDRLKSPALS- 154 (258)
T ss_pred EcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcchhhhhcCChhh-
Confidence 8742 24678999999988888 899999998754432 12333445688899999984 345666555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++ +++.++||+++
T Consensus 155 -------LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~-~~~~~~~d~i~ 224 (258)
T PRK14268 155 -------LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNM-QQAARISDYTG 224 (258)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999963 79999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 225 ~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 225 FFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988764
No 146
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=337.70 Aligned_cols=221 Identities=19% Similarity=0.267 Sum_probs=184.8
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEEC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~ 92 (622)
..+++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+|.. ..+|+|.++
T Consensus 5 ~~~l~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 72 (254)
T PRK14273 5 EAIIETENLNLFY--TDFKALNNINIKI-----LKNSITALIGPS-----GCGKSTFLRTLNRMNDLVEGIKIEGNVIYE 72 (254)
T ss_pred CceEEEeeeEEEe--CCceeecceeeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccccCCcCCCCceEEEEC
Confidence 3467899999987 5567999999999 678888888777 8999999999999998620 138999999
Q ss_pred CEecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccC
Q psy2519 93 GKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIG 162 (622)
Q Consensus 93 G~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~ 162 (622)
|+++.. ..++.+||++|++.+++ +||+||+.+....... ....+..++++++++.+++. +..++.+.
T Consensus 73 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 149 (254)
T PRK14273 73 GKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTNAL 149 (254)
T ss_pred CEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCCcc
Confidence 998742 35678999999988875 8999999987543211 12233456678899999873 44566655
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++||
T Consensus 150 ~--------LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~-~~~~~~~d~ 218 (254)
T PRK14273 150 S--------LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNM-QQAGRISDR 218 (254)
T ss_pred c--------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCE
Confidence 5 999999999999999999999999999999999999999999999953 68999999996 678889999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
+++|++|+++..|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999998764
No 147
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4e-40 Score=332.66 Aligned_cols=202 Identities=22% Similarity=0.324 Sum_probs=175.1
Q ss_pred ccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc---cccccEE
Q psy2519 29 VGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG---KFRSACG 105 (622)
Q Consensus 29 ~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~---~~r~~ig 105 (622)
+|+.++|+++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.. ..++.++
T Consensus 31 ~~~~~il~~vs~~i-----~~Ge~~~i~G~N-----GsGKSTLl~~i~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~ 97 (236)
T cd03267 31 YREVEALKGISFTI-----EKGEIVGFIGPN-----GAGKTTTLKILSGLLQP---TSGEVRVAGLVPWKRRKKFLRRIG 97 (236)
T ss_pred cCCeeeeeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCcCC---CceEEEECCEEccccchhhcccEE
Confidence 47778999999999 677788888887 89999999999999998 58999999997643 3567899
Q ss_pred EEe-cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHH
Q psy2519 106 FMY-QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFAT 184 (622)
Q Consensus 106 yV~-Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~ 184 (622)
|++ |++.+++.+||+||+.+...... ....+..++++++++.+||.+..++.+.+ ||||||||++||+
T Consensus 98 ~~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------LS~G~~qrl~la~ 166 (236)
T cd03267 98 VVFGQKTQLWWDLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPVRQ--------LSLGQRMRAEIAA 166 (236)
T ss_pred EEcCCccccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCChhh--------CCHHHHHHHHHHH
Confidence 998 45678899999999998765432 12333455678899999999888888777 9999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 185 ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 185 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
+|+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||++ +++.++||++++|++|++++.|
T Consensus 167 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999875589999999996 6788999999999999998765
No 148
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=336.06 Aligned_cols=213 Identities=22% Similarity=0.283 Sum_probs=183.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSS--FGKEILKDISVKF-----EGGAIYTIVGPS-----GAGKSTLIKLINRLIDP---TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEe--CCeeeeeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEEh
Confidence 46789999986 5677999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.++|++|++.+++ .||+||+.+...... . ..+++.++++.++|. +..++.+.+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~~~-------- 131 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG----E---KNVDVEYYLSIVGLNKEYATRDVKN-------- 131 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC----c---HHHHHHHHHHHcCCCHHHhhCCccc--------
Confidence 53 35678999999988887 699999987543221 1 134577899999996 566777555
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|++
T Consensus 132 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i 210 (241)
T PRK14250 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGIL 210 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999874589999999996 678889999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
+..|+++++.
T Consensus 211 ~~~~~~~~~~ 220 (241)
T PRK14250 211 VEYAKTYDFF 220 (241)
T ss_pred EEeCCHHHHh
Confidence 9999988764
No 149
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.7e-40 Score=337.92 Aligned_cols=219 Identities=24% Similarity=0.309 Sum_probs=186.9
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~--~~~~il~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSA--GGRLIVDGVDVTA-----PPGSLTGLLGPN-----GSGKSTLLRLLAGALRP---DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEE--CCEEEEeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHcCCCCC---CCCEEEECCEEcc
Confidence 4689999986 6678999999999 678888888887 89999999999999998 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
. ..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+++.+..++.+.+ |
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------L 138 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMST--------L 138 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCccc--------C
Confidence 4 3466799999998888889999999885311100 0011122345688999999998888888776 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|.|||++||++ +++.++||++++|++|+++
T Consensus 139 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (256)
T TIGR03873 139 SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDL-NLAASYCDHVVVLDGGRVV 216 (256)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEE
Confidence 99999999999999999999999999999999999999999999986 689999999996 6888999999999999999
Q ss_pred EecChHHHH
Q psy2519 253 FIGSKDAAL 261 (622)
Q Consensus 253 ~~G~~~~~~ 261 (622)
..|+++++.
T Consensus 217 ~~g~~~~~~ 225 (256)
T TIGR03873 217 AAGPPREVL 225 (256)
T ss_pred EecCHHHhh
Confidence 999988653
No 150
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.3e-40 Score=331.57 Aligned_cols=209 Identities=25% Similarity=0.317 Sum_probs=183.1
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+++| .+|+|.++|+++.
T Consensus 1 l~l~~v~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~~~~~~ 65 (223)
T TIGR03740 1 LETKNLSKRF--GKQTAVNNISLTV-----PKNSVYGLLGPN-----GAGKSTLLKMITGILRP---TSGEIIFDGHPWT 65 (223)
T ss_pred CEEEeEEEEE--CCEEEEeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEecc
Confidence 3678999986 5678999999999 677788888777 89999999999999998 5999999999876
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
...++.++|++|++.+++.+|++||+.+...... .. .+++.++++.+||.+..++.+.+ ||||||
T Consensus 66 ~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~--------LS~G~~ 130 (223)
T TIGR03740 66 RKDLHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKAKQ--------FSLGMK 130 (223)
T ss_pred ccccccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhHhh--------CCHHHH
Confidence 4334579999999999999999999988764432 11 23567899999999888888766 999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecCh
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 257 (622)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.+.|||+++|++|+++..|++
T Consensus 131 ~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 131 QRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKI 208 (223)
T ss_pred HHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecCh
Confidence 999999999999999999999999999999999999999986 689999999996 678889999999999999999986
Q ss_pred H
Q psy2519 258 D 258 (622)
Q Consensus 258 ~ 258 (622)
.
T Consensus 209 ~ 209 (223)
T TIGR03740 209 N 209 (223)
T ss_pred h
Confidence 5
No 151
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-40 Score=339.89 Aligned_cols=219 Identities=19% Similarity=0.275 Sum_probs=187.8
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.++++||+++|... +.++++++|+++ .+|+.+.|+|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i-----~~Ge~~~I~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~ 70 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSI-----TKGEWVSIIGQN-----GSGKSTTARLIDGLFEE---FEGKVKIDGEL 70 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CCCEEEECCEE
Confidence 46799999998422 246899999999 678888888887 89999999999999998 58999999998
Q ss_pred cCc----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 96 VEG----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
+.. ..++.+||++|++. +++..||.||+.++..... ..+.+..++++++++.+||.+..++.+..
T Consensus 71 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 140 (277)
T PRK13642 71 LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG---IPREEMIKRVDEALLAVNMLDFKTREPAR------- 140 (277)
T ss_pred CCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC---CCHHHHHHHHHHHHHHCCCHhHhhCCccc-------
Confidence 753 35788999999974 6778899999988654321 23344456788999999998888887666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++. .+|++++|++|+
T Consensus 141 -LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~-~~~~-~~d~i~~l~~G~ 217 (277)
T PRK13642 141 -LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL-DEAA-SSDRILVMKAGE 217 (277)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH-hCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999875599999999996 5664 699999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++..|+++++.
T Consensus 218 i~~~g~~~~~~ 228 (277)
T PRK13642 218 IIKEAAPSELF 228 (277)
T ss_pred EEEeCCHHHHh
Confidence 99999998765
No 152
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4e-40 Score=327.55 Aligned_cols=210 Identities=20% Similarity=0.315 Sum_probs=179.9
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.|. . .+.++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 ~~~~~l~~~~~--~--~~~~~s~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 63 (213)
T TIGR01277 1 LALDKVRYEYE--H--LPMEFDLNV-----ADGEIVAIMGPS-----GAGKSTLLNLIAGFIEP---ASGSIKVNDQSHT 63 (213)
T ss_pred CeEEeeeEEeC--C--cceeeEEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEEcc
Confidence 36899999873 2 467889888 678888888777 89999999999999998 5899999999875
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.+|||+|++.+++.+|+.||+.+....... ...+.+++++++++.+||.+..++.+.+ ||||
T Consensus 64 ~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 132 (213)
T TIGR01277 64 GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK---LNAEQQEKVVDAAQQVGIADYLDRLPEQ--------LSGG 132 (213)
T ss_pred cCChhccceEEEeccCccCCCCcHHHHHHhHhhccCC---ccHHHHHHHHHHHHHcCcHHHhhCCccc--------CCHH
Confidence 4 3567899999999999999999999876432211 1122345678899999998888888666 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|.|||++||++ +++.+.||++++|++|+++..|
T Consensus 133 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 133 QRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEec
Confidence 999999999999999999999999999999999999999999874589999999996 6788899999999999999887
Q ss_pred C
Q psy2519 256 S 256 (622)
Q Consensus 256 ~ 256 (622)
+
T Consensus 212 ~ 212 (213)
T TIGR01277 212 D 212 (213)
T ss_pred C
Confidence 5
No 153
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=335.63 Aligned_cols=221 Identities=23% Similarity=0.312 Sum_probs=185.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
.++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+|+ ...+|+|.++|+
T Consensus 4 ~l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 4 AIETVNLRVYY--GSNHVIKGVDLKI-----PQNGVFALMGPS-----GCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred eEEEEeEEEEe--CCeeeeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 46789999986 5667999999999 677788888777 899999999999999872 014899999999
Q ss_pred ecC--c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVE--G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~--~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++. . .+++.+||++|++.+++.+||.||+.++...+.. ..+.++..++++++++.+|+.+ ..++.+.+
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 149 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDYPSN- 149 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccChhh-
Confidence 874 1 3567899999999999999999999987543211 0122334456788999999853 34555554
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||+++
T Consensus 150 -------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i~ 219 (253)
T PRK14267 150 -------LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSP-AQAARVSDYVA 219 (253)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999964 58999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 220 ~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 220 FLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
No 154
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-40 Score=329.79 Aligned_cols=217 Identities=23% Similarity=0.306 Sum_probs=189.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| +.+++++++|+++ ++|+.+.++|+| |||||||+++|+|..+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~il~~i~~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~g~~~~---~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFY--GGFVALDGVSLDI-----KEGEFFTLLGPS-----GCGKTTLLRLIAGFETP---TSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEe--CCeeeeccceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEcC
Confidence 3578999986 5567999999999 678888888777 89999999999999998 4899999999886
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.+||++|++.+++.+|+.||+.+....+. .......++++++++.+||.+..++.+.+ ||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------lS~G 134 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKPSQ--------LSGG 134 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhh--------CCHH
Confidence 4 246789999999999999999999988765432 12233455778999999999888888666 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||+++|++ +++.+.||++++|++|++++.|
T Consensus 135 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~ 213 (232)
T cd03300 135 QQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIG 213 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999874589999999996 6788999999999999999999
Q ss_pred ChHHHH
Q psy2519 256 SKDAAL 261 (622)
Q Consensus 256 ~~~~~~ 261 (622)
+.+++.
T Consensus 214 ~~~~~~ 219 (232)
T cd03300 214 TPEEIY 219 (232)
T ss_pred CHHHHH
Confidence 887654
No 155
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=5.2e-40 Score=330.00 Aligned_cols=212 Identities=23% Similarity=0.317 Sum_probs=180.3
Q ss_pred CcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||+++|..++ .++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~Gl~~p---~~G~i~~~g~ 72 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVV-----KRGETIALIGES-----GSGKSTLLAILAGLDDG---SSGEVSLVGQ 72 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcCCCC---CCeeEEECCE
Confidence 467899999974322 36999999999 678888888887 89999999999999998 5899999999
Q ss_pred ecCc---c----c-cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 95 PVEG---K----F-RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~---~----~-r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
++.. . . ++.+||++|++.+++.+||.||+.+....+. ....+.+++++++++.++|.+..++.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 146 (228)
T PRK10584 73 PLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLPAQ--- 146 (228)
T ss_pred EcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCChhh---
Confidence 8753 1 1 3579999999999999999999988654321 12334456788999999998888888666
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +.+ +.+|++++|
T Consensus 147 -----LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l 219 (228)
T PRK10584 147 -----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL-QLA-ARCDRRLRL 219 (228)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999874589999999996 466 559999999
Q ss_pred cCCceEEe
Q psy2519 247 ADSRTAFI 254 (622)
Q Consensus 247 ~~G~iv~~ 254 (622)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99998753
No 156
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-40 Score=342.29 Aligned_cols=220 Identities=20% Similarity=0.280 Sum_probs=184.9
Q ss_pred CCcccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 16 NNEEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+.++++||+++|.... .++++++|+++ .+|+.++++|+| |||||||+|+|+|+.+| .+|+|.++
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~ 71 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTF-----KKNKVTCVIGTT-----GSGKSTMIQLTNGLIIS---ETGQTIVG 71 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEEC
Confidence 5578999999973211 35999999999 677788888777 89999999999999998 58999999
Q ss_pred CEecCc---------cccccEEEEecCCC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCc
Q psy2519 93 GKPVEG---------KFRSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTR 160 (622)
Q Consensus 93 G~~~~~---------~~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 160 (622)
|+++.. .+++.+|||+|++. +++ .||+||+.+...... ...++..++++++++.++|. +..++.
T Consensus 72 g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 72 DYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLG---ENKQEAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred CEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence 998631 34678999999863 444 599999998754321 12334456688899999994 677777
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
+++ ||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++|
T Consensus 148 ~~~--------LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~ 218 (289)
T PRK13645 148 PFE--------LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIA 218 (289)
T ss_pred hhh--------CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhC
Confidence 666 9999999999999999999999999999999999999999999999874589999999996 6788999
Q ss_pred cceeeecCCceEEecChHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|++++|++|++++.|+++++.
T Consensus 219 d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 219 DEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988764
No 157
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-40 Score=326.82 Aligned_cols=202 Identities=25% Similarity=0.343 Sum_probs=174.3
Q ss_pred CccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc---
Q psy2519 22 NVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--- 98 (622)
Q Consensus 22 ~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--- 98 (622)
||+|+| |+..+ ++|+++ .+ +.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 5 ~l~~~~--~~~~~--~vsl~i-----~~-e~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 66 (214)
T cd03297 5 DIEKRL--PDFTL--KIDFDL-----NE-EVTGIFGAS-----GAGKSTLLRCIAGLEKP---DGGTIVLNGTVLFDSRK 66 (214)
T ss_pred eeeEec--CCeee--CceEEE-----cc-eeEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEecccccc
Confidence 788886 66555 889888 56 788888777 89999999999999998 58999999998742
Q ss_pred -----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 99 -----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 99 -----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
..++.++|++|++.+++.+|++||+.+..... .....+++++++++.+|+.+..++.+.+ ||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS 133 (214)
T cd03297 67 KINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQ--------LS 133 (214)
T ss_pred hhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCccc--------CC
Confidence 24678999999999999999999998875322 1223345688999999998878887666 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.||++++|++|+++.
T Consensus 134 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999874589999999996 67888999999999999987
Q ss_pred ec
Q psy2519 254 IG 255 (622)
Q Consensus 254 ~G 255 (622)
.|
T Consensus 213 ~g 214 (214)
T cd03297 213 IG 214 (214)
T ss_pred cC
Confidence 65
No 158
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=7.7e-40 Score=330.83 Aligned_cols=217 Identities=27% Similarity=0.359 Sum_probs=189.1
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 1 i~i~~l~~~~--~~~~il~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRF--GSFQALDDVNLEV-----PTGSLVALLGPS-----GSGKSTLLRIIAGLEQP---DSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEE--CCeeeeeeEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEcC
Confidence 3688999986 5668999999999 677788888777 89999999999999988 5899999999876
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.+++ ||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------lS~G 134 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYPNQ--------LSGG 134 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCChhh--------CCHH
Confidence 4 346789999999999999999999998765432 12233446778999999998888888766 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.||++++|++|++++.|
T Consensus 135 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 213 (237)
T TIGR00968 135 QRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIG 213 (237)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999874489999999996 6788999999999999999999
Q ss_pred ChHHHH
Q psy2519 256 SKDAAL 261 (622)
Q Consensus 256 ~~~~~~ 261 (622)
+.+++.
T Consensus 214 ~~~~~~ 219 (237)
T TIGR00968 214 SPDEVY 219 (237)
T ss_pred CHHHHH
Confidence 988764
No 159
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-39 Score=329.50 Aligned_cols=216 Identities=23% Similarity=0.289 Sum_probs=187.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++.| ++. +++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~--~~~-~l~~is~~i-----~~Ge~~~i~G~n-----G~GKStLl~~l~G~~~p---~~G~v~i~g~~~~ 64 (235)
T cd03299 1 LKVENLSKDW--KEF-KLKNVSLEV-----ERGDYFVILGPT-----GSGKSVLLETIAGFIKP---DSGKILLNGKDIT 64 (235)
T ss_pred CeeEeEEEEe--CCc-eeeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCcCC---CceEEEECCEEcC
Confidence 3578999986 443 799999999 677888888877 89999999999999998 5899999999876
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.++|++|++.+++.+|+.||+.+...... ....+..+++.++++.+||.+..++.+.+ ||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 133 (235)
T cd03299 65 NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNRKPET--------LSGG 133 (235)
T ss_pred cCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHHhcCccc--------CCHH
Confidence 4 246789999999999999999999988754321 12344455678899999998888888776 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++||++ .++.++||++++|++|+++..|
T Consensus 134 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 212 (235)
T cd03299 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVG 212 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999874599999999996 6788899999999999999999
Q ss_pred ChHHHH
Q psy2519 256 SKDAAL 261 (622)
Q Consensus 256 ~~~~~~ 261 (622)
++++..
T Consensus 213 ~~~~~~ 218 (235)
T cd03299 213 KPEEVF 218 (235)
T ss_pred CHHHHH
Confidence 987654
No 160
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-40 Score=334.13 Aligned_cols=219 Identities=19% Similarity=0.301 Sum_probs=181.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
.++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.. |....+|+|.++|+
T Consensus 6 ~l~~~~l~~~~--~~~~il~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14242 6 KMEARGLSFFY--GDFQALHDISLEF-----EQNQVTALIGPS-----GCGKSTFLRCLNRMNDLIPGARVEGEILLDGE 73 (253)
T ss_pred EEEEeeeEEEE--CCeeeecceeEEE-----eCCCEEEEECCC-----CCCHHHHHHHHHhhcccCCCCCCceEEEECCE
Confidence 35688999986 5667999999999 677788888887 8999999999999864 10014899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++ .||+||+.+....+.. ...++..++++++++.+|+.+ ..++.+++
T Consensus 74 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 149 (253)
T PRK14242 74 NIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHESALG- 149 (253)
T ss_pred EccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhCCccc-
Confidence 8742 24678999999988888 5999999987543321 122334567888999999854 34555555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++ +++.++||+++
T Consensus 150 -------LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~-~~~~~~~d~v~ 219 (253)
T PRK14242 150 -------LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHNM-QQAARVSDVTA 219 (253)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999953 78999999996 67889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 220 ~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 220 FFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988653
No 161
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-40 Score=337.85 Aligned_cols=224 Identities=21% Similarity=0.270 Sum_probs=186.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC-----ceeeEEEE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC-----IIDGDIRV 91 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~-----~~~G~I~~ 91 (622)
+++++|++++| ++.++++++|+++ .+|+.+.++|+| |||||||||+|+|+++|.. ..+|+|.+
T Consensus 1 ml~~~nl~~~~--~~~~il~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 1 MLTADHLHVAR--RHRAILRDLSLRI-----EPGRVTALLGRN-----GAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred CeEEEEEEEEE--CCEeEEecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 36789999986 6678999999999 677788888777 8999999999999998730 12899999
Q ss_pred CCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 92 NGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 92 ~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
+|+++.. ..++.++|++|++.+++.+||+||+.+....... ......+..++++++++.+||.+..++.+.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 145 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTT--- 145 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCccc---
Confidence 9998753 3466789999998766679999999885321110 0111123345688999999998888887766
Q ss_pred CCccccChHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 167 TQKVVLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
|||||||||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.
T Consensus 146 -----LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~ 219 (272)
T PRK13547 146 -----LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAA 219 (272)
T ss_pred -----CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHH
Confidence 9999999999999999 599999999999999999999999999999874489999999996 6788
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++||++++|++|++++.|+++++.
T Consensus 220 ~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 220 RHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HhCCEEEEEECCeEEEecCHHHHc
Confidence 899999999999999999988663
No 162
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=331.50 Aligned_cols=221 Identities=20% Similarity=0.286 Sum_probs=184.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G 93 (622)
+.++++|++++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+ |....+|+|.++|
T Consensus 3 ~~l~~~nl~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 3 NKVKLEQLNVHF--GKNHAVKDVSMDF-----PENSVTAIIGPS-----GCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred cEEEEEEEEEEe--CCeeEEecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 457899999997 5667999999999 677888888777 8999999999999986 3111489999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGS 163 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~ 163 (622)
+++.. .+++.++|++|++.+++.+||.||+.+...... .....+..++++++++.+++.+ ..++.+++
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 148 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSNAME 148 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCc
Confidence 98742 357789999999999999999999987654321 1122333456789999999854 33455444
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++
T Consensus 149 --------LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~i 217 (252)
T PRK14256 149 --------LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNM-QQAARVSDYT 217 (252)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCH-HHHHhhCCEE
Confidence 999999999999999999999999999999999999999999999975 58999999996 6888999999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+++++.
T Consensus 218 ~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 218 AFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
No 163
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=332.87 Aligned_cols=220 Identities=20% Similarity=0.286 Sum_probs=184.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
.++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+|.. ..+|+|.++|+
T Consensus 4 ~l~i~~v~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~ 71 (258)
T PRK14241 4 RIDVKDLNIYY--GSFHAVEDVNLNI-----EPRSVTAFIGPS-----GCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE 71 (258)
T ss_pred cEEEeeEEEEE--CCEeeeeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhccCCcccCCCcceEEEECCE
Confidence 57899999997 5567999999999 677788888777 8999999999999987421 14899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++.+||+||+.+....+.. .+..+.+++++++++.+||. +..++.+++
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 148 (258)
T PRK14241 72 DLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGV--RNKKDLDELVEKSLRGANLWNEVKDRLDKPGGG- 148 (258)
T ss_pred eccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhHhhCCccc-
Confidence 8731 3567899999999999999999999987643321 12334456788999999984 345566555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+.||+++
T Consensus 149 -------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~-~~~~~~~d~i~ 218 (258)
T PRK14241 149 -------LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNM-QQAARVSDQTA 218 (258)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 58999999996 67889999999
Q ss_pred eec------CCceEEecChHHHH
Q psy2519 245 LLA------DSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~------~G~iv~~G~~~~~~ 261 (622)
+|+ +|++++.|+++++.
T Consensus 219 ~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 219 FFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEecccCCCCceEEecCCHHHHH
Confidence 997 79999999988764
No 164
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=330.19 Aligned_cols=220 Identities=22% Similarity=0.315 Sum_probs=182.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+|....+|+|.++|+++
T Consensus 2 ~~~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 2 IAKTTNLNLFY--GKKQALFDINMQI-----EQNKITALIGAS-----GCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred ceeeeeeEEEE--CCEeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 35789999987 5678999999999 677788888776 89999999999999752111589999999988
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCcCCCC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQ 168 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~~~~~ 168 (622)
.. ..++.+||++|++.+++ .||+||+.++...+... ....+.+++++++++.++|.+ ..++.+.+
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~----- 142 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQNALA----- 142 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcCCccc-----
Confidence 54 35778999999998887 69999999875443210 012334456789999999953 34555444
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||++ +++.+.+|++++|++
T Consensus 143 ---LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~i~~l~~ 216 (246)
T PRK14269 143 ---LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNM-QQGKRVADYTAFFHL 216 (246)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHHhhCcEEEEEEC
Confidence 999999999999999999999999999999999999999999999963 79999999996 678889999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|++++.|+++++.
T Consensus 217 G~i~~~g~~~~~~ 229 (246)
T PRK14269 217 GELIEFGESKEFF 229 (246)
T ss_pred CEEEEECCHHHHH
Confidence 9999999988764
No 165
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=332.70 Aligned_cols=220 Identities=20% Similarity=0.322 Sum_probs=183.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G 93 (622)
.+++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+ |....+|+|.++|
T Consensus 11 ~~l~i~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 11 EVYQINGMNLWY--GQHHALKNINLSI-----PENEVTAIIGPS-----GCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred ceEEEeeEEEEE--CCeeeEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 357899999986 5678999999999 677788888777 8999999999999987 3211489999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGS 163 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~ 163 (622)
+++.. ..++.+||++|++.+++. ||+||+.+....... ..+++..++++++++.+++.+ ..++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~ 155 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRLHTQALS 155 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhhhCCccc
Confidence 98742 346789999999888885 999999987543321 122344556788999999853 34555555
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|+|++||++ +++.+.|||+
T Consensus 156 --------LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d~i 224 (259)
T PRK14274 156 --------LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNM-QQAARVSDQT 224 (259)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999964 68999999996 6888999999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+++++.
T Consensus 225 ~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 225 AFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998764
No 166
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-40 Score=366.87 Aligned_cols=221 Identities=20% Similarity=0.253 Sum_probs=190.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ .+|+.++++|+| |||||||||+|+|+.+|+ ..+|+|.++|+++
T Consensus 5 ~l~~~nl~~~~--~~~~il~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTF--GGVKALDNVSLKV-----RAGEIVSLCGEN-----GAGKSTLMKVLSGVYPHG-TYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEe--CCeEeecceeEEE-----eCCeEEEEECCC-----CCCHHHHHHHHhCCCCCC-CCCeEEEECCEEC
Confidence 57899999986 6678999999999 677788888887 899999999999999862 1489999999988
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.+|||+|++.+++.+||+||+.++...+.....+.++..++++++++.+||.+..++.+++
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 143 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGN-------- 143 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhh--------
Confidence 53 13577999999999999999999999875432101112334456788999999998888888777
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +++.++||++++|++|++
T Consensus 144 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i 221 (506)
T PRK13549 144 LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTICVIRDGRH 221 (506)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999986 699999999996 688889999999999999
Q ss_pred EEecChHHH
Q psy2519 252 AFIGSKDAA 260 (622)
Q Consensus 252 v~~G~~~~~ 260 (622)
++.|+++++
T Consensus 222 ~~~~~~~~~ 230 (506)
T PRK13549 222 IGTRPAAGM 230 (506)
T ss_pred eeecccccC
Confidence 999988764
No 167
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=332.90 Aligned_cols=220 Identities=23% Similarity=0.330 Sum_probs=183.8
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G 93 (622)
..++++|+++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+ |....+|+|.++|
T Consensus 12 ~~l~~~~l~~~~--~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g 79 (260)
T PRK10744 12 SKIQVRNLNFYY--GKFHALKNINLDI-----AKNQVTAFIGPS-----GCGKSTLLRTFNRMYELYPEQRAEGEILLDG 79 (260)
T ss_pred ceEEEEEEEEEe--CCeEEeeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccccCCCCCcceEEEECC
Confidence 346789999987 5667999999999 677888888777 8999999999999986 2111489999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGS 163 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~ 163 (622)
+++.. .+++.++|++|++.+++ .||+||+.+...... ..+..+..++++++++.+++. +..++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 156 (260)
T PRK10744 80 ENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYS 156 (260)
T ss_pred EEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCC
Confidence 98742 35678999999988887 899999988754321 123334456788999999984 345666555
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++|++
T Consensus 157 --------LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d~i 225 (260)
T PRK10744 157 --------LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHNM-QQAARCSDYT 225 (260)
T ss_pred --------CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999953 68999999996 6788899999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+++++.
T Consensus 226 ~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 226 AFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
No 168
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=352.82 Aligned_cols=227 Identities=21% Similarity=0.290 Sum_probs=198.2
Q ss_pred CcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-CceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD-CIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~-~~~~G~I~~~G 93 (622)
.++|+||+++|...+ ++++++||+++ .+|+.+.|+|.+ ||||||+.++|.|+++++ ...+|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v-----~~GE~lgIvGES-----GsGKSt~a~~i~gll~~~~~~~~G~I~~~g 74 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEV-----EPGEILGIVGES-----GSGKSTLALALMGLLPEGGRITSGEVILDG 74 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEe-----cCCcEEEEEcCC-----CCCHHHHHHHHhccCCCCCcccceEEEECC
Confidence 678999999985332 47999999999 678888888764 899999999999999986 34689999999
Q ss_pred EecCc--------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCC
Q psy2519 94 KPVEG--------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 163 (622)
Q Consensus 94 ~~~~~--------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~ 163 (622)
+++.. ...+.|+||||++ .+.|-+||.+.+.-....+.. .+.++.++++.++++++||.+.... +
T Consensus 75 ~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~ 149 (539)
T COG1123 75 RDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---D 149 (539)
T ss_pred cchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---c
Confidence 97643 1458899999996 588889999999887766642 2367788899999999999887655 3
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
.+|++ |||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.++.|+++|++|||+ ..+.++||||
T Consensus 150 ~yPhe---LSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv 225 (539)
T COG1123 150 RYPHQ---LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRV 225 (539)
T ss_pred cCCcc---cCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeE
Confidence 34777 9999999999999999999999999999999999999999999999988999999999997 7899999999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|.+|++++.|+++++++
T Consensus 226 ~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 226 VVMYKGEIVETGPTEEILS 244 (539)
T ss_pred EEEECCEEEEecCHHHHHh
Confidence 9999999999999998874
No 169
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=333.25 Aligned_cols=220 Identities=19% Similarity=0.305 Sum_probs=184.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+|. ...+|+|.++|+
T Consensus 19 ~l~~~nl~~~~--~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~ 86 (267)
T PRK14235 19 KMRARDVSVFY--GEKQALFDVDLDI-----PEKTVTAFIGPS-----GCGKSTFLRCLNRMNDTIDGCRVTGKITLDGE 86 (267)
T ss_pred eEEEEeEEEEE--CCEEEEEEEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 67899999997 5678999999999 678888888777 899999999999998741 014899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. .+++.+||++|++.+++. ||.||+.+....+.. .....+..++++++++.+||.+ ..++.+++
T Consensus 87 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 163 (267)
T PRK14235 87 DIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTG- 163 (267)
T ss_pred ECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCCccc-
Confidence 8742 256789999999888875 999999987644321 0122334567889999999964 34555555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +.+.++||+++
T Consensus 164 -------LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~-~~~~~~~d~v~ 233 (267)
T PRK14235 164 -------LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSM-QQAARVSQRTA 233 (267)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999964 68999999996 68889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 234 ~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 234 FFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
No 170
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=353.19 Aligned_cols=222 Identities=22% Similarity=0.288 Sum_probs=193.7
Q ss_pred CCcccCCccccccc---------cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee
Q psy2519 16 NNEEVPNVDFSEIV---------GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID 86 (622)
Q Consensus 16 ~~~~~~~~~~~~~~---------g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~ 86 (622)
..++++||++.|.. |.+.++++|||.+ .+|+.+.++|. ||||||||.|+|+|+.+| .+
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l-----~~GE~lglVGe-----SGsGKSTlar~i~gL~~P---~~ 345 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL-----REGETLGLVGE-----SGSGKSTLARILAGLLPP---SS 345 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEe-----cCCCEEEEECC-----CCCCHHHHHHHHhCCCCC---CC
Confidence 45679999999973 3478899999999 67777777766 489999999999999999 48
Q ss_pred eEEEECCEecC--c----cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-cc
Q psy2519 87 GDIRVNGKPVE--G----KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQ 157 (622)
Q Consensus 87 G~I~~~G~~~~--~----~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~ 157 (622)
|+|.++|.+.. . ..|+.+-+|||++ .|.|.+||.+++.-....+... ...+++++++++++.+||.. ..
T Consensus 346 G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l 423 (539)
T COG1123 346 GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFL 423 (539)
T ss_pred ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHH
Confidence 99999998732 1 3567888999986 6999999999999987765432 24566778999999999975 57
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
+++ |++ ||||||||++|||||+.+|++|++|||||.||+..+.++.++|+++.++.|.|.|++|||+ +.+.
T Consensus 424 ~ry-----P~e---lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~ 494 (539)
T COG1123 424 DRY-----PHE---LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVR 494 (539)
T ss_pred hcC-----chh---cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHH
Confidence 777 455 9999999999999999999999999999999999999999999999998899999999996 7999
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++||||++|.+|++|..|+.++++
T Consensus 495 ~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 495 YIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred hhCceEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999888776
No 171
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.2e-39 Score=331.55 Aligned_cols=219 Identities=18% Similarity=0.192 Sum_probs=184.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe-
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP- 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~- 95 (622)
.++++||++.| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 6 ~l~~~~l~~~~--~~~~il~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLY--GPRKGCRDVSFDL-----YPGEVLGIVGES-----GSGKTTLLNALSARLAP---DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEc--CCceeeeeeeEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCEEEECCccc
Confidence 57899999987 5567999999999 678888888887 89999999999999998 58999999998
Q ss_pred ----cCc----c----ccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCc
Q psy2519 96 ----VEG----K----FRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTR 160 (622)
Q Consensus 96 ----~~~----~----~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ 160 (622)
+.. . .++.+|||+|++ .+++.+|+.||+.+....... ....+..++++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA--RHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 542 1 245799999996 477889999999775322110 112234556889999999974 66777
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
+.+ ||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +.+.+.|
T Consensus 149 ~~~--------LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~ 219 (258)
T PRK11701 149 PTT--------FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLA 219 (258)
T ss_pred Ccc--------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhc
Confidence 666 9999999999999999999999999999999999999999999999875589999999996 6788899
Q ss_pred cceeeecCCceEEecChHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|++++|++|++++.|+++++.
T Consensus 220 d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 220 HRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988764
No 172
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9e-40 Score=364.95 Aligned_cols=219 Identities=21% Similarity=0.255 Sum_probs=189.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 4 ~i~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~l~G~N-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAF--PGVKALSGAALNV-----YPGRVMALVGEN-----GAGKSTMMKVLTGIYTR---DAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEe--CCeEEeeeeeEEE-----cCCeEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEEC
Confidence 57899999987 5678999999999 677788888887 89999999999999998 489999999987
Q ss_pred Cc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 97 EG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
.. . .++.+|||+|++.+++.+||+||+.++...... ...+..+.+++++++++.+||.+..++.+++
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 141 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE------- 141 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhh-------
Confidence 53 1 356799999999999999999999986433210 1112233456788999999999888888777
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ .|+|||++|||+ +++.++||++++|++|+
T Consensus 142 -LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~~l~~G~ 218 (501)
T PRK10762 142 -LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVTVFRDGQ 218 (501)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999986 699999999996 68889999999999999
Q ss_pred eEEecChHHH
Q psy2519 251 TAFIGSKDAA 260 (622)
Q Consensus 251 iv~~G~~~~~ 260 (622)
++..|+++++
T Consensus 219 i~~~~~~~~~ 228 (501)
T PRK10762 219 FIAEREVADL 228 (501)
T ss_pred EEEecCcCcC
Confidence 9999987754
No 173
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=329.72 Aligned_cols=218 Identities=19% Similarity=0.307 Sum_probs=181.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC---CCCCceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV---IDDCIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~---~~~~~~~G~I~~~G 93 (622)
+++++|+++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+. +|. ..+|+|.++|
T Consensus 3 ~l~~~~~~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWY--GDFHALKGISMEI-----EEKSVVAFIGPS-----GCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEE--CCEeEEeeeeEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhhhhcccCCC-CCceEEEECC
Confidence 46789999986 6678999999999 677888888777 899999999999973 331 1389999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGS 163 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~ 163 (622)
+++.. ..++.++|++|++.+++ .|+.||+.+....+.. .......+.++++++.+||.+ ..++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 146 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKESAFA 146 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhCCccc
Confidence 98743 24678999999988887 5999999887544321 112234456789999999864 34555444
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++ .++|||++||++ +++.++|||+
T Consensus 147 --------LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiivtH~~-~~~~~~~d~v 215 (250)
T PRK14245 147 --------LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KDYTIVIVTHNM-QQAARVSDKT 215 (250)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCH-HHHHhhCCEE
Confidence 99999999999999999999999999999999999999999999995 379999999996 6788999999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 216 AFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998774
No 174
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.8e-39 Score=330.14 Aligned_cols=218 Identities=20% Similarity=0.245 Sum_probs=183.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC-ceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC-IIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~-~~~G~I~~~G~~ 95 (622)
.++++||+++| + .++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|.. ..+|+|.++|++
T Consensus 4 ~l~~~~l~~~~--~-~~il~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~ 70 (254)
T PRK10418 4 QIELRNIALQA--A-QPLVHGVSLTL-----QRGRVLALVGGS-----GSGKSLTCAAALGILPAGVRQTAGRVLLDGKP 70 (254)
T ss_pred EEEEeCeEEEe--c-cceecceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCCCCCCcCCEEEECCee
Confidence 56889999997 3 57999999999 678888888887 8999999999999998721 138999999998
Q ss_pred cCc-c-ccccEEEEecCCC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc---ccCCccCCcCCCC
Q psy2519 96 VEG-K-FRSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQ 168 (622)
Q Consensus 96 ~~~-~-~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~~~~~~ 168 (622)
+.. . .++.++||+|++. +.+.+|+.+++.+.+..... .. ..+++.++++.++|.+ ..++.+++
T Consensus 71 i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~----- 140 (254)
T PRK10418 71 VAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK---PA--DDATLTAALEAVGLENAARVLKLYPFE----- 140 (254)
T ss_pred ccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCC---Ch--HHHHHHHHHHHcCCCChhhhhhcCCcc-----
Confidence 854 2 3467999999974 55778999998775433211 11 2256789999999976 45666666
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +++.++||++++|++
T Consensus 141 ---LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~ 216 (254)
T PRK10418 141 ---MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSH 216 (254)
T ss_pred ---cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999875589999999996 678889999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|+++..|+++++.
T Consensus 217 G~i~~~~~~~~~~ 229 (254)
T PRK10418 217 GRIVEQGDVETLF 229 (254)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
No 175
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.7e-39 Score=363.13 Aligned_cols=213 Identities=21% Similarity=0.296 Sum_probs=187.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ .+|+.++++|+| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~liG~N-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQY--SGVEVLKGIDFTL-----HAGEVHALLGGN-----GAGKSTLMKIIAGIVPP---DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEe--CCceeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 57899999986 6677999999999 677788888887 89999999999999998 489999999987
Q ss_pred Cc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. . .++.+|||+|++.+++.+||+||+.+.... ..+.+++++++++.+||.+..++.+++
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 140 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGS-------- 140 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhh--------
Confidence 53 1 235799999999999999999999886321 123345688999999999888888777
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|++
T Consensus 141 LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i 218 (510)
T PRK15439 141 LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKL-PEIRQLADRISVMRDGTI 218 (510)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 688899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 219 ~~~g~~~~~~ 228 (510)
T PRK15439 219 ALSGKTADLS 228 (510)
T ss_pred EEecChHHcC
Confidence 9999988653
No 176
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-39 Score=328.41 Aligned_cols=220 Identities=21% Similarity=0.272 Sum_probs=183.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+|+|+|+++|.. ..+|+|.++|+
T Consensus 4 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 71 (252)
T PRK14272 4 LLSAQDVNIYY--GDKQAVKNVNLDV-----QRGTVNALIGPS-----GCGKTTFLRAINRMHDLTPGARVTGRILLDGQ 71 (252)
T ss_pred EEEEeeeEEEE--CCEEeeccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCCCcCCCCceeEEECCE
Confidence 57899999987 5678999999999 677788888777 8999999999999987631 13799999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++.+|+.||+.+....... ..+++..++++++++.+++. +..++.+++
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~- 148 (252)
T PRK14272 72 DIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGI--RDRDHLMEVAERSLRGAALWDEVKDRLKTPATG- 148 (252)
T ss_pred EcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCcchhhhhhhcCCccc-
Confidence 8742 3467899999999999999999999876543211 12233345667777877763 344666555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+.|||++
T Consensus 149 -------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i~ 218 (252)
T PRK14272 149 -------LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNM-HQAARVSDTTS 218 (252)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 69999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 219 ~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 219 FFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
No 177
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-39 Score=328.50 Aligned_cols=221 Identities=20% Similarity=0.272 Sum_probs=184.4
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEEC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~ 92 (622)
+-+++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+|. ...+|+|.++
T Consensus 2 ~~~l~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~~~~~~~~G~i~~~ 69 (251)
T PRK14270 2 KIKMESKNLNLWY--GEKQALNDINLPI-----YENKITALIGPS-----GCGKSTFLRCLNRMNDLISNVKIEGEVLLD 69 (251)
T ss_pred ccEEEEEEeEEEE--CCeeeeeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhccCcccCCCCccEEEEC
Confidence 3467899999986 5677999999999 677888888777 899999999999998741 1148999999
Q ss_pred CEecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccC
Q psy2519 93 GKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIG 162 (622)
Q Consensus 93 G~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~ 162 (622)
|+++.. ..++.+||++|++.+++ +|++||+.+....... ....+..++++++++.++|. +..++.++
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 146 (251)
T PRK14270 70 GKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKSAL 146 (251)
T ss_pred CEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCCcc
Confidence 998742 24678999999998887 8999999987544321 12233455678899999884 33455555
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++|||
T Consensus 147 ~--------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d~ 215 (251)
T PRK14270 147 K--------LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSDY 215 (251)
T ss_pred c--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcCE
Confidence 4 999999999999999999999999999999999999999999999975 48999999996 688899999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
+++|++|++++.|+++++.
T Consensus 216 v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 216 TAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEECCeEEEeCCHHHHh
Confidence 9999999999999998764
No 178
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1e-39 Score=329.88 Aligned_cols=218 Identities=22% Similarity=0.309 Sum_probs=173.1
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.|..++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRI-----KPGEVVGIVGRS-----GSGKSTLTKLIQRFYVP---ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCCEEEECCeehH
Confidence 3578999997444567999999999 677788888776 89999999999999998 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh--CCCcccCCccCCcCCCCccc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~~~~~~~~g 171 (622)
. ..++.+||++|++.+++ .||.||+.+....................++++.+ ++....++.+.+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-------- 138 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAG-------- 138 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCc--------
Confidence 3 35678999999987775 69999998753211000000000111234555555 555555566555
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++ .|+|||++||++ +++ +.||++++|++|++
T Consensus 139 LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~-~~~-~~~d~v~~l~~G~i 214 (237)
T cd03252 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRL-STV-KNADRIIVMEKGRI 214 (237)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCH-HHH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999996 389999999997 466 46999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 215 ~~~~~~~~~~ 224 (237)
T cd03252 215 VEQGSHDELL 224 (237)
T ss_pred EEEcCHHHHH
Confidence 9999988764
No 179
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=363.31 Aligned_cols=219 Identities=21% Similarity=0.267 Sum_probs=189.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|++++| |+.++++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~liG~n-----GsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSF--GPVHALKSVNLTV-----YPGEIHALLGEN-----GAGKSTLMKVLSGIHEP---TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEc--CCeEEeeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHcCCcCC---CccEEEECCEEC
Confidence 57899999986 6678999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcC----CCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 97 EG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLK----LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 97 ~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~----~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
.. . .++.+|||+|++.+++.+||+||+.++.... .....+..+..++++++++.+||.+..++.+++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 145 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVAN---- 145 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhh----
Confidence 54 1 3467999999999999999999998754211 100012234456788999999999888888777
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++||++ +++.++||++++|+
T Consensus 146 ----LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~-~~~~~~~d~v~~l~ 219 (510)
T PRK09700 146 ----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKL-AEIRRICDRYTVMK 219 (510)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999987 599999999996 68889999999999
Q ss_pred CCceEEecChHHH
Q psy2519 248 DSRTAFIGSKDAA 260 (622)
Q Consensus 248 ~G~iv~~G~~~~~ 260 (622)
+|++++.|+++++
T Consensus 220 ~G~i~~~g~~~~~ 232 (510)
T PRK09700 220 DGSSVCSGMVSDV 232 (510)
T ss_pred CCEEeeecchhhC
Confidence 9999999998764
No 180
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-39 Score=326.89 Aligned_cols=219 Identities=21% Similarity=0.313 Sum_probs=182.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCC--CCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVID--DCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~--~~~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.++ ....+|+|.++|+
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14240 3 KISVKDLDLFY--GDFQALKKINLDI-----EENQVTALIGPS-----GCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQ 70 (250)
T ss_pred eEEEEEEEEEE--CCceeeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 46789999987 5567999999999 677788888777 89999999999998763 2114899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+|||+|++.+++ +|+.||+.+....... .+.++..++++++++.+++. +..++.+++
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~- 146 (250)
T PRK14240 71 DIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKSALG- 146 (250)
T ss_pred EccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCC-
Confidence 8752 25778999999988887 8999999987543321 12233456678889999874 334566555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +.+.+.+|+++
T Consensus 147 -------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~v~ 216 (250)
T PRK14240 147 -------LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTHNM-QQASRISDKTA 216 (250)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999953 78999999996 67889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 217 ~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 217 FFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
No 181
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-39 Score=327.44 Aligned_cols=219 Identities=21% Similarity=0.249 Sum_probs=181.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
+++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+ |....+|+|.++|+
T Consensus 5 ~l~~~~l~~~~--~~~~~l~~~s~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~ 72 (252)
T PRK14239 5 ILQVSDLSVYY--NKKKALNSVSLDF-----YPNEITALIGPS-----GSGKSTLLRSINRMNDLNPEVTITGSIVYNGH 72 (252)
T ss_pred eEEEEeeEEEE--CCeeeeeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcccccCCCCCccceEEECCE
Confidence 47899999987 5667999999999 677788888777 8999999999999853 52113899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. .+++.+|||+|++.+++ +||+||+.+....... .......++++++++.+++.+ ..++.+++
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 148 (252)
T PRK14239 73 NIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGI--KDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG- 148 (252)
T ss_pred ECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCchhHHHHHhcCccc-
Confidence 8742 24678999999988887 8999999987543311 112233456788899998743 34555555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+.|||++
T Consensus 149 -------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~ 218 (252)
T PRK14239 149 -------LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSM-QQASRISDRTG 218 (252)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 58999999996 67889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 219 ~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 219 FFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
No 182
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-39 Score=327.34 Aligned_cols=218 Identities=21% Similarity=0.347 Sum_probs=180.5
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCEec
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGKPV 96 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~~~ 96 (622)
+++||++.| ++.++++++|+++ .+|+.+.|+|+| |||||||+++|+|+.+ |....+|+|.++|+++
T Consensus 7 ~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~I~G~n-----GsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 74 (251)
T PRK14244 7 SVKNLNLWY--GSKQILFDINLDI-----YKREVTAFIGPS-----GCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74 (251)
T ss_pred EeeeEEEEE--CCeeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhcccCCCCCcceEEEECCEeh
Confidence 578999986 5678999999999 677788888777 8999999999999986 2111489999999987
Q ss_pred Cc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCcCC
Q psy2519 97 EG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSI 166 (622)
Q Consensus 97 ~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~~~ 166 (622)
.. ..++.+||++|++.+++. ||.||+.+....+.. .....+..+.+.++++.+||.+ ..++.+++
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~--- 149 (251)
T PRK14244 75 YSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE--- 149 (251)
T ss_pred HhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhh---
Confidence 42 257789999999888886 999999987543321 1122334456788999999965 23455444
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++ .|+|||++||++ +++.+.||++++|
T Consensus 150 -----LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiiisH~~-~~~~~~~d~i~~l 221 (251)
T PRK14244 150 -----LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KNFTIIVVTHSM-KQAKKVSDRVAFF 221 (251)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCH-HHHHhhcCEEEEE
Confidence 99999999999999999999999999999999999999999999995 379999999996 6788899999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 222 QSGRIVEYNTTQEIF 236 (251)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988664
No 183
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-39 Score=326.75 Aligned_cols=219 Identities=20% Similarity=0.304 Sum_probs=182.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++++++|+++ ++|+.+.++|+| ||||||||++|+|+.+|. ...+|+|.++|.
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~i~~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 3 IIEIENFSAYY--GEKKAVKNVTMKI-----FKNQITAIIGPS-----GCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred eEEEEeeEEEe--CCceeEeeeeEee-----cCCCEEEEECCC-----CCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 46899999986 5678999999999 677788888887 899999999999998741 114899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. ..++.++|++|++.+++ .||+||+.+....... ....+.++.++++++.+++.+ ..++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGV--KSKHKLDRIVEESLKKAALWDEVKSELNKPGTR- 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCchhHHHHhCChhh-
Confidence 8742 24678999999998887 8999999987543211 122334456788999999854 34555554
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +.+.+++|+++
T Consensus 147 -------LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~-~~~~~~~d~i~ 216 (250)
T PRK14262 147 -------LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNI-GQAIRIADYIA 216 (250)
T ss_pred -------cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 68999999996 57889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 217 FMYRGELIEYGPTREIV 233 (250)
T ss_pred EEECCEEEEecCHHHHH
Confidence 99999999999988764
No 184
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4.3e-39 Score=328.43 Aligned_cols=220 Identities=19% Similarity=0.195 Sum_probs=183.2
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.+++++||++.| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|++
T Consensus 2 ~~l~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 66 (253)
T TIGR02323 2 PLLQVSGLSKSY--GGGKGCRDVSFDL-----YPGEVLGIVGES-----GSGKSTLLGCLAGRLAP---DHGTATYIMRS 66 (253)
T ss_pred ceEEEeeeEEEe--CCceEeecceEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEEeccc
Confidence 467899999987 5567899999999 677788888777 89999999999999998 58999999987
Q ss_pred -----cCc----c----ccccEEEEecCCC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCC
Q psy2519 96 -----VEG----K----FRSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHT 159 (622)
Q Consensus 96 -----~~~----~----~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 159 (622)
+.. . .++.+||++|++. +.+.+|+.||+.+........ ...+..++++++++.+|+. +..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~ 144 (253)
T TIGR02323 67 GAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGAR--HYGNIRAAAHDWLEEVEIDPTRIDD 144 (253)
T ss_pred ccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhccc--chHHHHHHHHHHHHHcCCChhhhhc
Confidence 532 1 2457999999864 566789999997643211100 1123346788999999997 46777
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~ 239 (622)
.+.+ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +++.+.
T Consensus 145 ~~~~--------LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~ 215 (253)
T TIGR02323 145 LPRA--------FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLL 215 (253)
T ss_pred Cchh--------cCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHh
Confidence 7666 9999999999999999999999999999999999999999999999875589999999996 688889
Q ss_pred ccceeeecCCceEEecChHHHH
Q psy2519 240 FDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
+|++++|++|+++..|+++++.
T Consensus 216 ~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 216 AQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred cCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999988664
No 185
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-40 Score=323.49 Aligned_cols=204 Identities=23% Similarity=0.379 Sum_probs=176.1
Q ss_pred cccccccceeeeEeeeeEEEEcccCCC-cceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----
Q psy2519 24 DFSEIVGSVQVYAIVNLLVIMDQTAST-SKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG---- 98 (622)
Q Consensus 24 ~~~~~~g~~~~l~~v~l~~~~~~~~~~-~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~---- 98 (622)
++....|...+ ++|+.. ++ |.+++-|. ||||||||+|+|+|+.+| .+|.|.+||+-+.+
T Consensus 5 ~~~~~lG~~~l--~a~~~~------p~~GvTAlFG~-----SGsGKTslin~IaGL~rP---deG~I~lngr~L~Ds~k~ 68 (352)
T COG4148 5 NFRQRLGNFAL--DANFTL------PARGITALFGP-----SGSGKTSLINMIAGLTRP---DEGRIELNGRVLVDAEKG 68 (352)
T ss_pred ehhhhcCceEE--EEeccC------CCCceEEEecC-----CCCChhhHHHHHhccCCc---cccEEEECCEEeecccCC
Confidence 34444455433 445554 45 66666655 589999999999999999 59999999997643
Q ss_pred ----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 99 ----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.-+|+|||||||..|||++||+.||.|+.... .....+++.+.+|++|..++++.+ |||
T Consensus 69 i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~--------LSG 131 (352)
T COG4148 69 IFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGT--------LSG 131 (352)
T ss_pred cccChhhheeeeEeeccccccceEEecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCc--------cCc
Confidence 24789999999999999999999999986432 234567899999999999999777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+++|++|+||||.+.||-.-..+++-.|.+++++.+..|+.|||.+ +|+.+++|+|++|++|++.+.
T Consensus 132 GEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~ 210 (352)
T COG4148 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKAS 210 (352)
T ss_pred chhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEec
Confidence 9999999999999999999999999999999999999999999998899999999996 799999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+.+++.
T Consensus 211 g~~e~v~ 217 (352)
T COG4148 211 GPLEEVW 217 (352)
T ss_pred CcHHHHh
Confidence 9999775
No 186
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-39 Score=328.52 Aligned_cols=221 Identities=18% Similarity=0.262 Sum_probs=185.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
.++++||+++| ++..+++++|+++ ++|+.+.++|+| ||||||||++|+|+.+|+. ..+|+|.++|+
T Consensus 7 ~l~~~nl~~~~--~~~~il~~is~~i-----~~Ge~~~I~G~n-----GsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~ 74 (261)
T PRK14258 7 AIKVNNLSFYY--DTQKILEGVSMEI-----YQSKVTAIIGPS-----GCGKSTFLKCLNRMNELESEVRVEGRVEFFNQ 74 (261)
T ss_pred eEEEeeEEEEe--CCeeEeeceEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcccCCCCCccccceEEECCE
Confidence 57899999987 5667999999999 678888888777 8999999999999998731 13799999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. .+++.++|++|++.+++ +|++||+.+....... .+..+..+++.++++.+++.+ ..++.+.+
T Consensus 75 ~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 150 (261)
T PRK14258 75 NIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHKSALD- 150 (261)
T ss_pred EhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcCCccc-
Confidence 8631 35678999999988888 8999999886543211 122333456788999999854 34555444
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||++ .++.++||+++
T Consensus 151 -------LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~ 222 (261)
T PRK14258 151 -------LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTA 222 (261)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEE
Confidence 9999999999999999999999999999999999999999999999764589999999996 68899999999
Q ss_pred eecC-----CceEEecChHHHH
Q psy2519 245 LLAD-----SRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~-----G~iv~~G~~~~~~ 261 (622)
+|++ |++++.|+++++.
T Consensus 223 ~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 223 FFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EEccCCCcCceEEEeCCHHHHH
Confidence 9999 9999999999874
No 187
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-39 Score=330.71 Aligned_cols=219 Identities=19% Similarity=0.286 Sum_probs=180.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
+++++|+++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+ |....+|+|.++|+
T Consensus 21 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 88 (268)
T PRK14248 21 ILEVKDLSIYY--GEKRAVNDISMDI-----EKHAVTALIGPS-----GCGKSTFLRSINRMNDLIPSARSEGEILYEGL 88 (268)
T ss_pred eEEEEEEEEEe--CCceeeeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhcccccCCCCCceEEEECCE
Confidence 47889999987 5677999999999 677788888887 8999999999999864 10015899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++. |+.||+.+....... .......+.+.+.++.+++. +..++.+++
T Consensus 89 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 164 (268)
T PRK14248 89 NILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGE--RRKSVLDEIVEESLTKAALWDEVKDRLHSSALS- 164 (268)
T ss_pred EcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCCcchHHHHhcCccc-
Confidence 8742 246789999999988885 999999987543211 11222345577888888885 334566555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++|||++
T Consensus 165 -------LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~v~ 234 (268)
T PRK14248 165 -------LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNM-QQALRVSDRTA 234 (268)
T ss_pred -------CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 58999999996 67889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 235 ~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 235 FFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
No 188
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.1e-39 Score=317.67 Aligned_cols=198 Identities=25% Similarity=0.333 Sum_probs=170.9
Q ss_pred cCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-
Q psy2519 20 VPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG- 98 (622)
Q Consensus 20 ~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~- 98 (622)
++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 1 i~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~ 65 (206)
T TIGR03608 1 LKNISKKF--GDKIILDDLNLTI-----EKGKMYAIIGES-----GSGKSTLLNIIGLLEKF---DSGQVYLNGKETPPL 65 (206)
T ss_pred CcceEEEE--CCEEEEeceEEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeEEEECCEEcccc
Confidence 57899986 5678999999999 677788888777 89999999999999998 58999999998531
Q ss_pred -------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 99 -------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 99 -------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
..++.++|++|++.+++.+|++||+.+...... ..+.+..++++++++.+||.+..++.+.+
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 134 (206)
T TIGR03608 66 NSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKK---LSKKEKREKKKEALEKVGLNLKLKQKIYE-------- 134 (206)
T ss_pred chhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCchhhhcCChhh--------
Confidence 246789999999999999999999998754321 22344456788999999998888888766
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|+|++||++ +. .+.||++++|
T Consensus 135 lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~-~~~~d~i~~l 206 (206)
T TIGR03608 135 LSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDP-EV-AKQADRVIEL 206 (206)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HH-HhhcCEEEeC
Confidence 999999999999999999999999999999999999999999999987 599999999997 44 4689999875
No 189
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=6.9e-40 Score=372.21 Aligned_cols=229 Identities=24% Similarity=0.341 Sum_probs=189.2
Q ss_pred eEEeecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 10 TVILFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
....-.+.++++||+|.|...+.++|+|+|+++ ++|+.++|+|++ |||||||+|+|+|+.+| .+|+|
T Consensus 464 ~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I-----~~Ge~vaIvG~S-----GsGKSTL~KLL~gly~p---~~G~I 530 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEI-----PPGEKVAIVGRS-----GSGKSTLLKLLLGLYKP---QQGRI 530 (709)
T ss_pred cccccCceEEEEEEEEEeCCCCcchhhceeEEe-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceE
Confidence 455566789999999999766668999999999 678888888775 89999999999999999 59999
Q ss_pred EECCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcC
Q psy2519 90 RVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 165 (622)
Q Consensus 90 ~~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~ 165 (622)
++||.|++. .+|+++|||+||+.++.. |++||+.++......+..-...+.+-+++.+. .++...|+.+++
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-- 605 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-- 605 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH--hccccccccccc--
Confidence 999999876 489999999999988766 99999998753221111111111122333333 345567888877
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
...+||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|.++.+ |+|+|+++|.+ ...+.||||++
T Consensus 606 --~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl--~ti~~adrIiV 679 (709)
T COG2274 606 --GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL--STIRSADRIIV 679 (709)
T ss_pred --CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccc--hHhhhccEEEE
Confidence 2356999999999999999999999999999999999999999999999974 79999999997 56789999999
Q ss_pred ecCCceEEecChHHHHH
Q psy2519 246 LADSRTAFIGSKDAALA 262 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~~ 262 (622)
|++|+++.+|+.+|+.+
T Consensus 680 l~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 680 LDQGKIVEQGSHEELLA 696 (709)
T ss_pred ccCCceeccCCHHHHHH
Confidence 99999999999998874
No 190
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.8e-39 Score=395.91 Aligned_cols=225 Identities=22% Similarity=0.249 Sum_probs=200.9
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++.++++||+|.|..+++.+++++|+++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I-----~~GEi~gLLG~N-----GAGKTTLlkmL~Gll~p---tsG~I~i~G~ 2001 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGV-----RPGECFGLLGVN-----GAGKTTTFKMLTGDTTV---TSGDATVAGK 2001 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEE-----cCCcEEEEECCC-----CCcHHHHHHHHhCCCCC---CccEEEECCE
Confidence 3568899999998432467999999999 788888888887 79999999999999999 4899999999
Q ss_pred ecCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 95 PVEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 95 ~~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
++.. +.++.+||++|++.+++.+||+|++.+.++++. .++++.+++++++++.+||.+.+|+++++
T Consensus 2002 ~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~~-------- 2070 (2272)
T TIGR01257 2002 SILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAGT-------- 2070 (2272)
T ss_pred ECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChhh--------
Confidence 9853 357789999999999999999999999877653 23344566788999999999999999887
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||+||+||+.+|++|||||||+||||.+++++++.|+++++ +|+|||++||++ +++.++|||+++|++|++
T Consensus 2071 LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i 2148 (2272)
T TIGR01257 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR-EGRAVVLTSHSM-EECEALCTRLAIMVKGAF 2148 (2272)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 599999999996 799999999999999999
Q ss_pred EEecChHHHHHHHH
Q psy2519 252 AFIGSKDAALAFLE 265 (622)
Q Consensus 252 v~~G~~~~~~~~~~ 265 (622)
+..|+++++...+.
T Consensus 2149 ~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2149 QCLGTIQHLKSKFG 2162 (2272)
T ss_pred EEECCHHHHHHHhC
Confidence 99999999877664
No 191
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-39 Score=331.80 Aligned_cols=219 Identities=20% Similarity=0.239 Sum_probs=181.7
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEEC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~ 92 (622)
..+++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.++.. ..+|+|.++
T Consensus 11 ~~~l~i~nl~~~~--~~~~il~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 11 NIIISLQNVTISY--GTFEAVKNVFCDI-----PRGKVTALIGPS-----GCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred CceEEEEeEEEEE--CCEEEEcceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3468899999986 6678999999999 677788888877 8999999999999987310 158999999
Q ss_pred CEecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccC
Q psy2519 93 GKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIG 162 (622)
Q Consensus 93 G~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~ 162 (622)
|+++.. ..++.+|||+|++.+++. ||+||+.+....+. .. .+..++++++++.+++. +..++.+.
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 153 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNESGY 153 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCCcc
Confidence 998741 356789999999988884 99999998764432 11 12345567888888874 34566655
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||+
T Consensus 154 ~--------LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d~ 222 (269)
T PRK14259 154 S--------LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNM-QQAVRVSDM 222 (269)
T ss_pred c--------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCE
Confidence 5 999999999999999999999999999999999999999999999953 68999999996 688899999
Q ss_pred eeeecC-----------CceEEecChHHHH
Q psy2519 243 IILLAD-----------SRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~-----------G~iv~~G~~~~~~ 261 (622)
+++|++ |++++.|+++++.
T Consensus 223 i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 223 TAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEEeccccccccccccceEEEeCCHHHHH
Confidence 999996 6789999998775
No 192
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.7e-39 Score=323.60 Aligned_cols=201 Identities=24% Similarity=0.337 Sum_probs=170.7
Q ss_pred eEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCC
Q psy2519 35 YAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 114 (622)
Q Consensus 35 l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~ 114 (622)
++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++... ....+|++|++.++
T Consensus 1 l~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~ 66 (230)
T TIGR01184 1 LKGVNLTI-----QQGEFISLIGHS-----GCGKSTLLNLISGLAQP---TSGGVILEGKQITEP-GPDRMVVFQNYSLL 66 (230)
T ss_pred CCceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEECCCC-ChhheEEecCcccC
Confidence 35778888 577788888777 89999999999999998 599999999987642 22358999999999
Q ss_pred CCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEE
Q psy2519 115 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194 (622)
Q Consensus 115 ~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLl 194 (622)
+.+||+||+.+....... ...+.+.+++++++++.+||.+..++.+++ ||||||||++|||+|+.+|++||
T Consensus 67 ~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSgG~~qrv~la~al~~~p~lll 137 (230)
T TIGR01184 67 PWLTVRENIALAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPGQ--------LSGGMKQRVAIARALSIRPKVLL 137 (230)
T ss_pred CCCCHHHHHHHHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChhh--------CCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999886431111 123344456788999999999888888766 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHH
Q psy2519 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 259 (622)
Q Consensus 195 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 259 (622)
|||||+|||+.++.++.+.|++++++.|+|||++||++ +++.++||++++|++|+++..|+..+
T Consensus 138 LDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 138 LDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 99999999999999999999999875589999999996 67889999999999999999886553
No 193
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-39 Score=326.03 Aligned_cols=219 Identities=20% Similarity=0.264 Sum_probs=182.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|.. ..+|+|.++|+
T Consensus 4 ~l~~~~l~~~~--~~~~il~~~s~~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 4 KIKIRGVNFFY--HKHQVLKNINMDF-----PERQITAIIGPS-----GCGKSTLLRALNRMNDIVSGARLEGAVLLDNE 71 (251)
T ss_pred eEEEEEEEEEE--CCeeEecceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccCccccCCcccEEEECCE
Confidence 57789999986 5677999999999 677788888777 8999999999999998731 12699999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. ..++.+|||+|++.+++. ||+||+.+....+... .+++..+.++++++.+++.+ ..++.+++
T Consensus 72 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~- 147 (251)
T PRK14249 72 NIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLA- 147 (251)
T ss_pred EccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHhhCCccc-
Confidence 8742 357889999999988875 9999999876433211 12223455777888888753 34555544
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||++ +++.+.||+++
T Consensus 148 -------LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~-~~~~~~~d~i~ 217 (251)
T PRK14249 148 -------LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNM-QQAARASDWTG 217 (251)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCH-HHHHhhCCEEE
Confidence 99999999999999999999999999999999999999999999994 479999999996 68889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 218 FLLTGDLVEYGRTGEIF 234 (251)
T ss_pred EEeCCeEEEeCCHHHHH
Confidence 99999999999988764
No 194
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=7.4e-39 Score=329.45 Aligned_cols=221 Identities=22% Similarity=0.297 Sum_probs=187.1
Q ss_pred CcccCCcccccccc-------ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 17 NEEVPNVDFSEIVG-------SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-------~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
+++++||++.|..| +.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~sG~i 69 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSL-----KSGETVALLGRS-----GCGKSTLARLLVGLESP---SQGNV 69 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEE
Confidence 36789999998431 467999999999 677788888777 89999999999999988 59999
Q ss_pred EECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCC
Q psy2519 90 RVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHT 159 (622)
Q Consensus 90 ~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 159 (622)
.++|+++.. ..++.+||++|++ .+++..|+.|++.+...... .....+..++++++++.+|+. +..++
T Consensus 70 ~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 70 SWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred EECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhC
Confidence 999998743 2467899999997 47788999999987543211 112334456789999999996 56777
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~ 239 (622)
.+.+ ||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|.|+|++||++ +++.++
T Consensus 148 ~~~~--------LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~ 218 (268)
T PRK10419 148 RPPQ--------LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERF 218 (268)
T ss_pred CCcc--------CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHh
Confidence 7666 9999999999999999999999999999999999999999999999875589999999996 688889
Q ss_pred ccceeeecCCceEEecChHHHH
Q psy2519 240 FDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
||++++|++|++++.|+++++.
T Consensus 219 ~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 219 CQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred CCEEEEEECCEEeeeCChhhcc
Confidence 9999999999999999988754
No 195
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=327.58 Aligned_cols=227 Identities=18% Similarity=0.221 Sum_probs=187.2
Q ss_pred ceEEeec---CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--C
Q psy2519 9 KTVILFK---NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--C 83 (622)
Q Consensus 9 ~~~~~~~---~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~ 83 (622)
..+|++- ..++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+|. .
T Consensus 9 ~~~~~~~~~~~~l~~~nl~~~~--~~~~il~~vsl~i-----~~Ge~~~I~G~n-----GsGKSTLl~~l~Gl~~~~~~~ 76 (267)
T PRK14237 9 RHIITFPEEEIALSTKDLHVYY--GKKEAIKGIDMQF-----EKNKITALIGPS-----GSGKSTYLRSLNRMNDTIDIA 76 (267)
T ss_pred ceeEecCCCCeEEEEeeEEEEE--CCeeeEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhccCccCCC
Confidence 3455553 457889999987 6678999999999 678888888777 899999999999998641 0
Q ss_pred ceeeEEEECCEecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc--
Q psy2519 84 IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-- 155 (622)
Q Consensus 84 ~~~G~I~~~G~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-- 155 (622)
..+|+|.++|+++.. ..++.+|||+|++.+++ .||+||+.++..... ...+.+..+++.++++.++|.+
T Consensus 77 ~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i 153 (267)
T PRK14237 77 RVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQV 153 (267)
T ss_pred CcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchh
Confidence 158999999998742 24778999999988887 599999998754321 1123344566888999999853
Q ss_pred --ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 156 --SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 156 --~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
..++.+++ ||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++
T Consensus 154 ~~~~~~~~~~--------LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~- 222 (267)
T PRK14237 154 KDDLHKSALT--------LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNM- 222 (267)
T ss_pred hhhhcCCccc--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-
Confidence 34555444 999999999999999999999999999999999999999999999953 68999999996
Q ss_pred HHHHhhccceeeecCCceEEecChHHHH
Q psy2519 234 SELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 234 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
+++.++||++++|++|++++.|+++++.
T Consensus 223 ~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 223 QQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 6788999999999999999999998764
No 196
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4.8e-39 Score=321.35 Aligned_cols=209 Identities=23% Similarity=0.350 Sum_probs=179.4
Q ss_pred cccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++||++.|..+ ..++++++|+++ .+|+.+.|+|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i-----~~G~~~~I~G~n-----GsGKStLl~~l~G~~~~---~~G~i~~~g~~ 68 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEI-----NPGEIVILTGPS-----GSGKTTLLTLIGGLRSV---QEGSLKVLGQE 68 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCEE
Confidence 4678999987432 267999999999 677788888777 89999999999999998 59999999998
Q ss_pred cCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 96 VEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 96 ~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
+.. ..++.++|++|++.+++.+|+.||+.+....... ...++..++++++++.+||.+..++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 141 (220)
T TIGR02982 69 LYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPN--LSYQEARERARAMLEAVGLGDHLDYYPHN----- 141 (220)
T ss_pred hHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCChhhhhcChhh-----
Confidence 753 2467899999999999999999999987654321 23344556789999999998888888666
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ + ..++||++++|++
T Consensus 142 ---lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l~~ 216 (220)
T TIGR02982 142 ---LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHMED 216 (220)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999875589999999996 3 5689999999999
Q ss_pred Cce
Q psy2519 249 SRT 251 (622)
Q Consensus 249 G~i 251 (622)
|++
T Consensus 217 g~~ 219 (220)
T TIGR02982 217 GKL 219 (220)
T ss_pred CEE
Confidence 986
No 197
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-39 Score=325.57 Aligned_cols=219 Identities=20% Similarity=0.288 Sum_probs=182.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+|. ...+|+|.++|.
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (249)
T PRK14253 3 KFNIENLDLFY--GENQALKSINLPI-----PARQVTALIGPS-----GCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE 70 (249)
T ss_pred eEEEeccEEEE--CCeeeeecceEEe-----cCCCEEEEECCC-----CCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 46789999986 5678999999999 678888888887 899999999999998852 014899999999
Q ss_pred ecCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCcC
Q psy2519 95 PVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSS 165 (622)
Q Consensus 95 ~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~~ 165 (622)
++.. ..++.+||++|++.+++ .||.||+.+...... ...+....+++.+.++.+++.+ ..++.+++
T Consensus 71 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-- 145 (249)
T PRK14253 71 DIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFG-- 145 (249)
T ss_pred EcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcCccc--
Confidence 8742 35678999999998887 899999988754321 1122334456778888888753 34455444
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++
T Consensus 146 ------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~~~d~i~~ 216 (249)
T PRK14253 146 ------LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSM-QQARRISDRTAF 216 (249)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCH-HHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999975 48999999996 688899999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|+++..|+++++.
T Consensus 217 l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 217 FLMGELVEHDDTQVIF 232 (249)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988653
No 198
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-39 Score=365.58 Aligned_cols=221 Identities=19% Similarity=0.246 Sum_probs=190.4
Q ss_pred CcccCCccccccc--c-------ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee
Q psy2519 17 NEEVPNVDFSEIV--G-------SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG 87 (622)
Q Consensus 17 ~~~~~~~~~~~~~--g-------~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G 87 (622)
.++++||+++|.. + ..++++++|+++ .+|+.+.++|+| |||||||+++|+|+++| .+|
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i-----~~Ge~~~lvG~n-----GsGKSTLlk~i~Gl~~p---~~G 379 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDL-----WPGETLSLVGES-----GSGKSTTGRALLRLVES---QGG 379 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcCCCC---CCc
Confidence 5889999999842 1 257999999999 677788888776 89999999999999998 589
Q ss_pred EEEECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-ccc
Q psy2519 88 DIRVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQ 157 (622)
Q Consensus 88 ~I~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 157 (622)
+|.++|+++.. .+++.+|||||++ .++|.+||.||+.+....+.. ..+.+.+++++++++.+||. +..
T Consensus 380 ~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~L~~~gL~~~~~ 457 (623)
T PRK10261 380 EIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGL--LPGKAAAARVAWLLERVGLLPEHA 457 (623)
T ss_pred EEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCHHHh
Confidence 99999998743 1467899999996 589999999999987544321 12334456788999999996 567
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++++++ |||||||||+|||||+.+|++|||||||+|||+.++.++.++|++++++.|.|||++|||+ +.+.
T Consensus 458 ~~~~~~--------LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~ 528 (623)
T PRK10261 458 WRYPHE--------FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVE 528 (623)
T ss_pred hCCccc--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH
Confidence 888666 9999999999999999999999999999999999999999999999875699999999996 6888
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++||||++|++|++++.|+++++.
T Consensus 529 ~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 529 RISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred HhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999875
No 199
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-38 Score=325.36 Aligned_cols=219 Identities=19% Similarity=0.293 Sum_probs=181.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
.++++||+++| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+ |....+|+|.++|+
T Consensus 4 ~l~~~~l~~~~--~~~~~l~~~sl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~ 71 (251)
T PRK14251 4 IISAKDVHLSY--GNYEALHGISLDF-----EEKELTALIGPS-----GCGKSTFLRCLNRMNDDIENIKITGEIKFEGQ 71 (251)
T ss_pred eEEEEeeEEEE--CCeeeeeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhhccccccCCCcceEEEECCE
Confidence 46789999986 6678999999999 677788888777 8999999999999986 21114899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++ .||+||+.+....... ...+...++++++++.+++. +..++.+.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 147 (251)
T PRK14251 72 NIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDRNAQA- 147 (251)
T ss_pred EcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhccChhh-
Confidence 8742 25678999999988886 7999999886543211 11222345678899999984 334555554
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+.||+++
T Consensus 148 -------LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~-~~~~~~~d~i~ 217 (251)
T PRK14251 148 -------FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNL-QQAGRISDQTA 217 (251)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCH-HHHHhhcCEEE
Confidence 999999999999999999999999999999999999999999999954 68999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 218 FLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
No 200
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-39 Score=315.52 Aligned_cols=194 Identities=28% Similarity=0.459 Sum_probs=164.4
Q ss_pred cccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++||+|+|+.| +.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|....+|+|.++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVV-----KPGEMVLVLGRP-----GSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEE-----CCCcEEEEECCC-----CCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 4689999999765 678999999999 678888888777 8999999999999998311158999999998
Q ss_pred cCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 96 VEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 96 ~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
+.. ..++.++|++|++.+++.+||+||+.+..... .++.+.+ |
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~--------L 119 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRG--------I 119 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhh--------C
Confidence 754 35778999999999999999999998764210 3444444 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.+.|+|+++|+..+++.+.||++++|++|+++
T Consensus 120 S~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 120 SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999987446777776665446888999999999999998
Q ss_pred Eec
Q psy2519 253 FIG 255 (622)
Q Consensus 253 ~~G 255 (622)
+.|
T Consensus 200 ~~g 202 (202)
T cd03233 200 YYG 202 (202)
T ss_pred ecC
Confidence 765
No 201
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-39 Score=356.76 Aligned_cols=216 Identities=18% Similarity=0.228 Sum_probs=185.7
Q ss_pred cCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-
Q psy2519 20 VPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG- 98 (622)
Q Consensus 20 ~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~- 98 (622)
++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 1 ~~nl~~~~--~~~~il~~vs~~i-----~~Ge~~~liG~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~ 65 (491)
T PRK10982 1 MSNISKSF--PGVKALDNVNLKV-----RPHSIHALMGEN-----GAGKSTLLKCLFGIYQK---DSGSILFQGKEIDFK 65 (491)
T ss_pred CCceEEEe--CCEEeeeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHcCCCCC---CceEEEECCEECCCC
Confidence 47899986 6678999999999 677788888777 89999999999999998 58999999998753
Q ss_pred ----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 99 ----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
..++.+|||+|++.+++.+||+||+.++.........+..+..++++++++.+++.+..++.+++ |||
T Consensus 66 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSg 137 (491)
T PRK10982 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVAT--------LSV 137 (491)
T ss_pred CHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhh--------CCH
Confidence 24678999999998999999999998864211110012233456788999999998888888777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++++ .|+|||++||++ +++.++||++++|++|+++..
T Consensus 138 Gq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 138 SQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999999999999999999999987 699999999996 688899999999999999999
Q ss_pred cChHHH
Q psy2519 255 GSKDAA 260 (622)
Q Consensus 255 G~~~~~ 260 (622)
|++++.
T Consensus 216 ~~~~~~ 221 (491)
T PRK10982 216 QPLAGL 221 (491)
T ss_pred cChhhC
Confidence 987764
No 202
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=324.19 Aligned_cols=220 Identities=19% Similarity=0.285 Sum_probs=180.8
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G 93 (622)
.+++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+ |....+|+|.++|
T Consensus 4 ~~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 4 KIITSSDVHLFY--GKFEALKGIDLDF-----NQNEITALIGPS-----GCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred ceEEEEeEEEEE--CCeeEEecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 357899999986 5678999999999 677788888777 8999999999999875 3211489999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGS 163 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~ 163 (622)
+++.. ..++.+||++|++.+++ .||+||+.+....+... ..+...+++.+.++.+++. +..++.+++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~ 148 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHLHESALS 148 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHHhcCccc
Confidence 98742 35678999999988888 69999999875433211 1222234567788888774 334555554
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+.||++
T Consensus 149 --------LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i 217 (252)
T PRK14255 149 --------LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSM-HQASRISDKT 217 (252)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999975 48999999996 6788899999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|++.++.
T Consensus 218 ~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 218 AFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 203
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.1e-38 Score=320.80 Aligned_cols=206 Identities=22% Similarity=0.261 Sum_probs=173.0
Q ss_pred eeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-CceeeEEEECCEecCc-c-ccccEEEEecC
Q psy2519 34 VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD-CIIDGDIRVNGKPVEG-K-FRSACGFMYQH 110 (622)
Q Consensus 34 ~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~-~~~~G~I~~~G~~~~~-~-~r~~igyV~Q~ 110 (622)
+++++|+++ ++|+.++++|+| |||||||+|+|+|+.+|. ...+|+|.++|+++.. . .++.+||++|+
T Consensus 1 ~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 70 (230)
T TIGR02770 1 LVQDLNLSL-----KRGEVLALVGES-----GSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQN 70 (230)
T ss_pred CccceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecC
Confidence 467889888 677788888887 899999999999999871 0038999999998864 2 24689999999
Q ss_pred CC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC---cccCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 111 DL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM---NSQHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 111 ~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
+. +.+.+|++||+.+....... ...+..++++++++.++|. +..++.+++ |||||||||+|||+
T Consensus 71 ~~~~~~~~~t~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--------LS~G~~qrv~lara 139 (230)
T TIGR02770 71 PRTAFNPLFTMGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKYPFQ--------LSGGMLQRVMIALA 139 (230)
T ss_pred chhhcCcccCHHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCChhh--------cCHHHHHHHHHHHH
Confidence 74 66789999999876543211 1233456788999999997 456777666 99999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 186 L~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.+|++++|++|+++..|+++++.
T Consensus 140 l~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 140 LLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999874589999999996 6888899999999999999999988764
No 204
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=326.61 Aligned_cols=219 Identities=18% Similarity=0.273 Sum_probs=182.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCc--eeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCI--IDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~--~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|+.. .+|+|.++|+
T Consensus 7 ~l~~~~l~~~~--~~~~il~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~ 74 (259)
T PRK14260 7 AIKVKDLSFYY--NTSKAIEGISMDI-----YRNKVTAIIGPS-----GCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ 74 (259)
T ss_pred eEEEEEEEEEE--CCeEeecceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhcCcccCCccceEEEECCE
Confidence 46789999986 5677999999999 678888888777 89999999999999885311 3899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.++|++|++.+++ +||+||+.+....+.. .++.+..++++++++.+++. +..++.+.+
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~- 150 (259)
T PRK14260 75 NIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAK--LPQADLDEIVESALKGAALWQEVKDKLNKSALG- 150 (259)
T ss_pred eccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhhHhcCCccc-
Confidence 8742 24678999999998887 8999999887543321 12233445678889999884 345555544
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||+++
T Consensus 151 -------LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~i~~~~d~i~ 220 (259)
T PRK14260 151 -------LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNM-QQATRVSDFTA 220 (259)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCeEE
Confidence 999999999999999999999999999999999999999999999964 58999999996 68889999999
Q ss_pred eec-----CCceEEecChHHHH
Q psy2519 245 LLA-----DSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~-----~G~iv~~G~~~~~~ 261 (622)
+|+ +|++++.|+++++.
T Consensus 221 ~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 221 FFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EEeccCCCCceEEEeCCHHHHh
Confidence 998 59999999999764
No 205
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-39 Score=325.24 Aligned_cols=218 Identities=25% Similarity=0.311 Sum_probs=174.8
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|...+.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDI-----PAGETVALVGPS-----GSGKSTLVNLIPRFYDV---DSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccccC---CCCEEEECCEEhh
Confidence 3678999987322237899999999 677788888877 89999999999999998 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh--CCCcccCCccCCcCCCCccc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~~~~~~~~g 171 (622)
. ..++.++|++|++.+++ .||+||+.+..................+++.++.+ ++.+..++.+.+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-------- 138 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVK-------- 138 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCc--------
Confidence 3 35678999999988886 69999998764221100000001111345666666 666666666555
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |.|||++||++ +++.. ||++++|++|++
T Consensus 139 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~-~d~v~~l~~G~i 214 (234)
T cd03251 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRL-STIEN-ADRIVVLEDGKI 214 (234)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEecCH-HHHhh-CCEEEEecCCeE
Confidence 999999999999999999999999999999999999999999999963 79999999997 56654 999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
+..|+++++.
T Consensus 215 ~~~~~~~~~~ 224 (234)
T cd03251 215 VERGTHEELL 224 (234)
T ss_pred eeeCCHHHHH
Confidence 9999988764
No 206
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=330.33 Aligned_cols=219 Identities=20% Similarity=0.278 Sum_probs=181.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+ |....+|+|.++|+
T Consensus 39 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~ 106 (286)
T PRK14275 39 HVVAKNFSIYY--GEFEAVKKVNADI-----LSKYVTAIIGPS-----GCGKSTFLRAINRMNDLIPSCHTTGALMFDGE 106 (286)
T ss_pred EEEEeeeEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccccCCCCCCceEEEECCE
Confidence 46889999987 5567999999999 678888888877 8999999999999864 21014899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+|||+|++.+++. ||.||+.+....+.. .+....++++.++++.+|+. +..++.+.+
T Consensus 107 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~- 182 (286)
T PRK14275 107 DIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKNALG- 182 (286)
T ss_pred EhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCChhh-
Confidence 8742 246789999999988875 999999987543321 12223345677889999874 345666555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++|||++
T Consensus 183 -------LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~-~~~~~~~d~i~ 252 (286)
T PRK14275 183 -------LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNM-QQASRVSDYTM 252 (286)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999974 58999999996 68888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 253 ~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 253 FFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
No 207
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2e-38 Score=323.28 Aligned_cols=222 Identities=19% Similarity=0.222 Sum_probs=182.1
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC--CCCCCceeeEEEEC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ--VIDDCIIDGDIRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~--~~~~~~~~G~I~~~ 92 (622)
+.+++++||++.| ++.++++++|+++ ++|+.++++|+| |||||||+++|+|+ .+| .+|+|.++
T Consensus 5 ~~~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~Gl~~~~~---~~G~i~~~ 69 (252)
T CHL00131 5 KPILEIKNLHASV--NENEILKGLNLSI-----NKGEIHAIMGPN-----GSGKSTLSKVIAGHPAYKI---LEGDILFK 69 (252)
T ss_pred CceEEEEeEEEEe--CCEEeeecceeEE-----cCCcEEEEECCC-----CCCHHHHHHHHcCCCcCcC---CCceEEEC
Confidence 3457899999987 4567999999999 678888888887 89999999999998 356 58999999
Q ss_pred CEecCc----cccc-cEEEEecCCCCCCCCCHHHHHHHHHHcCCC----ccccHHHHHHHHHHHHHHhCCC-cccCCccC
Q psy2519 93 GKPVEG----KFRS-ACGFMYQHDLFSPSLTVYEHLYFMALLKLD----RRVKAYQRIALINSLLIELGLM-NSQHTRIG 162 (622)
Q Consensus 93 G~~~~~----~~r~-~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~ 162 (622)
|.++.. ..++ .++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+|+. +..++.++
T Consensus 70 g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 149 (252)
T CHL00131 70 GESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN 149 (252)
T ss_pred CEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc
Confidence 998754 1222 488999999999999999999876432110 0112223345678899999997 45666654
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh-cc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FD 241 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~-~D 241 (622)
. .|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||++ +.+... +|
T Consensus 150 ~-------~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~-~~~~~~~~d 220 (252)
T CHL00131 150 E-------GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQ-RLLDYIKPD 220 (252)
T ss_pred c-------CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHhhhCC
Confidence 1 2999999999999999999999999999999999999999999999986 689999999996 566666 89
Q ss_pred ceeeecCCceEEecChHHH
Q psy2519 242 KIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~ 260 (622)
++++|++|++++.|+++.+
T Consensus 221 ~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 221 YVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred EEEEEeCCEEEEecChhhh
Confidence 9999999999999998843
No 208
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-40 Score=308.59 Aligned_cols=220 Identities=23% Similarity=0.280 Sum_probs=199.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|+| |++.+++++|+.+ .+|+.+.++||| ||||||||.+++.+++. .+|+|.++|+++
T Consensus 1 MI~i~nv~K~y--~~~~vl~~isl~i-----~~g~iTs~IGPN-----GAGKSTLLS~~sRL~~~---d~G~i~i~g~~~ 65 (252)
T COG4604 1 MITIENVSKSY--GTKVVLDDVSLDI-----PKGGITSIIGPN-----GAGKSTLLSMMSRLLKK---DSGEITIDGLEL 65 (252)
T ss_pred CeeehhhhHhh--CCEEeeccceeee-----cCCceeEEECCC-----CccHHHHHHHHHHhccc---cCceEEEeeeec
Confidence 57899999996 9999999999999 688899999888 79999999999999998 599999999999
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.. ++.+.++.+-|+......+||+|-+.|+.-.+. +.....+.+..+++.++.++|++..|++..+ |
T Consensus 66 ~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryLd~--------L 136 (252)
T COG4604 66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYLDE--------L 136 (252)
T ss_pred ccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhHHh--------c
Confidence 65 478889999999999999999999999743332 2223355677899999999999999999888 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||.-||+.|+.+.+.++||||.++||-..+.++++.|++++++.|+|||+|.||. ..+-.++|+|+-|++|+++
T Consensus 137 SGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv 215 (252)
T COG4604 137 SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVV 215 (252)
T ss_pred ccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEE
Confidence 999999999999999999999999999999999999999999999998999999999996 5778899999999999999
Q ss_pred EecChHHHH
Q psy2519 253 FIGSKDAAL 261 (622)
Q Consensus 253 ~~G~~~~~~ 261 (622)
..|+++++.
T Consensus 216 ~~G~~~eii 224 (252)
T COG4604 216 KQGSPDEII 224 (252)
T ss_pred ecCCHHHhc
Confidence 999999886
No 209
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=323.87 Aligned_cols=219 Identities=20% Similarity=0.270 Sum_probs=182.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++|+++|+++ .+|+.+.++|+| |||||||+++|+|+..+.. ..+|+|.++|+
T Consensus 6 ~i~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14261 6 ILSTKNLNLWY--GEKHALYDITISI-----PKNRVTALIGPS-----GCGKSTLLRCFNRMNDLIPGCRITGDILYNGE 73 (253)
T ss_pred eEEEeeeEEEE--CCeeeeeeeEEEE-----CCCcEEEEECCC-----CCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 46789999986 6678999999999 677788888777 8999999999999876311 13799999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++. ||+||+.+..+.+.. ....+.++.+.++++.+++.+ ..++.+.+
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~- 149 (253)
T PRK14261 74 NIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDSALS- 149 (253)
T ss_pred EccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcChhh-
Confidence 8742 346789999999988885 999999987654321 122333456788899988853 34555544
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+.+|+++
T Consensus 150 -------LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~-~~~~~~~d~v~ 219 (253)
T PRK14261 150 -------LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNM-QQAARVSDYTG 219 (253)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999975 58999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 220 ~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 220 FMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEECCEEEEcCCHHHHH
Confidence 99999999999988764
No 210
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=327.19 Aligned_cols=219 Identities=24% Similarity=0.332 Sum_probs=182.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.++. ...+|+|.++|+
T Consensus 25 ~l~~~nl~~~~--~~~~il~~vs~~i-----~~Ge~~~I~G~n-----GsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~ 92 (272)
T PRK14236 25 ALEVRNLNLFY--GDKQALFDISMRI-----PKNRVTAFIGPS-----GCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQ 92 (272)
T ss_pred EEEEEEEEEEE--CCeeEeeeEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhcCCCccCCCCceEEEECCE
Confidence 47899999987 5667999999999 677888888777 899999999999998731 014899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. ..++.++|++|++.+++. ||+||+.+....... ..+.+.+++++++++.+++.+ ..++.+.+
T Consensus 93 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 168 (272)
T PRK14236 93 NIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHENAFG- 168 (272)
T ss_pred ECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhhCCccc-
Confidence 8752 357789999999988886 999999887543321 122233456788999999853 34555544
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+.||+++
T Consensus 169 -------LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~~~~~~d~i~ 238 (272)
T PRK14236 169 -------LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNM-QQAARVSDYTA 238 (272)
T ss_pred -------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999974 68999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 239 ~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 239 FMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEECCEEEecCCHHHHh
Confidence 99999999999988663
No 211
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.5e-38 Score=323.65 Aligned_cols=209 Identities=22% Similarity=0.314 Sum_probs=179.5
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++||++. .+|+++|+++ .+|+.+.++|+| |||||||+++|+|+.++ +|+|.++|+++..
T Consensus 2 ~~~~l~~~------~~l~~vsl~i-----~~Gei~~l~G~n-----GsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~ 61 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEV-----RAGEILHLVGPN-----GAGKSTLLARMAGLLPG----SGSIQFAGQPLEA 61 (248)
T ss_pred cccccchh------ceecceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCCCC----CeEEEECCEecCc
Confidence 57888884 2799999999 677788888777 89999999999999853 7999999998753
Q ss_pred ----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 99 ----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
..++.+||++|++.+++.+||.||+.+..... ....+..++++++++.+||.+..++.+++ |||
T Consensus 62 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 129 (248)
T PRK03695 62 WSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSVNQ--------LSG 129 (248)
T ss_pred CCHHHHhhheEEecccCccCCCccHHHHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCccc--------CCH
Confidence 24567999999988888999999998863221 12233456788999999998888888776 999
Q ss_pred HHHHHHHHHHHHhh-------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 175 GERKRLSFATELLT-------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 175 GqrqRvsIA~aL~~-------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||++||++|+. +|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|+
T Consensus 130 G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~ 207 (248)
T PRK03695 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLRHADRVWLLK 207 (248)
T ss_pred HHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 99999999999998 6799999999999999999999999999986 689999999996 67889999999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|+++..|+++++.
T Consensus 208 ~G~i~~~g~~~~~~ 221 (248)
T PRK03695 208 QGKLLASGRRDEVL 221 (248)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999987653
No 212
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-38 Score=364.32 Aligned_cols=222 Identities=16% Similarity=0.237 Sum_probs=188.6
Q ss_pred CCcccCCccccccc--cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIV--GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~--g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
.+++++||+++|.. ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+++| .+|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v-----~~Ge~~~lvG~n-----GsGKSTLl~~l~Gll~p---~~G~i~~~g 77 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSL-----QRGETLAIVGES-----GSGKSVTALALMRLLEQ---AGGLVQCDK 77 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEE-----CCCCEEEEECCC-----CChHHHHHHHHHcCCCC---CCeEEEECC
Confidence 36789999999843 2467999999999 678888888776 89999999999999998 489999998
Q ss_pred EecC-------------c----cc-cccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC
Q psy2519 94 KPVE-------------G----KF-RSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL 153 (622)
Q Consensus 94 ~~~~-------------~----~~-r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL 153 (622)
.++. . .. ++.+|||+|++ .++|.+||.||+.++.+.+. ..+..+.+++++++++.+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL 155 (623)
T PRK10261 78 MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRI 155 (623)
T ss_pred EEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCC
Confidence 7441 0 12 25799999997 68899999999999865431 12344556788999999999
Q ss_pred Cc---ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEec
Q psy2519 154 MN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 154 ~~---~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH 230 (622)
.+ ..++++.+ |||||||||+||+||+.+|++|||||||++||+.++.++.++|++++++.|+|||++||
T Consensus 156 ~~~~~~~~~~~~~--------LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itH 227 (623)
T PRK10261 156 PEAQTILSRYPHQ--------LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITH 227 (623)
T ss_pred CChhhHHhCCCcc--------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 64 46777666 99999999999999999999999999999999999999999999998756999999999
Q ss_pred cCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 231 QPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 231 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|+ ..+.++||||++|++|++++.|+++++.
T Consensus 228 dl-~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 228 DM-GVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred CH-HHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 96 6888999999999999999999988764
No 213
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-39 Score=347.66 Aligned_cols=222 Identities=27% Similarity=0.368 Sum_probs=188.9
Q ss_pred cceEEeecCCcccC--CccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCce
Q psy2519 8 SKTVILFKNNEEVP--NVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCII 85 (622)
Q Consensus 8 ~~~~~~~~~~~~~~--~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~ 85 (622)
.|......+..+++ |+++.|+.|+ +++.++|+++ ++|+.++++|++ |||||||+++|+|+.+| +
T Consensus 309 ~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~-----~~g~~talvG~S-----GaGKSTLl~lL~G~~~~---~ 374 (559)
T COG4988 309 EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTI-----KAGQLTALVGAS-----GAGKSTLLNLLLGFLAP---T 374 (559)
T ss_pred cccccccCCCceeeecceEEecCCCC-cccCCceeEe-----cCCcEEEEECCC-----CCCHHHHHHHHhCcCCC---C
Confidence 34345555666766 9999998777 8999999999 678888888775 89999999999999999 5
Q ss_pred eeEEEECCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc------
Q psy2519 86 DGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN------ 155 (622)
Q Consensus 86 ~G~I~~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~------ 155 (622)
+|+|.+||.+..+ .+|++++||+|++.+++. |++||+.++..- .+ ++.+.+++++.||.+
T Consensus 375 ~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~-----~s----~e~i~~al~~a~l~~~v~~p~ 444 (559)
T COG4988 375 QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD-----AS----DEEIIAALDQAGLLEFVPKPD 444 (559)
T ss_pred CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc-----CC----HHHHHHHHHHhcHHHhhcCCC
Confidence 9999999998865 489999999999998887 999999986421 12 234566777777754
Q ss_pred ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHH
Q psy2519 156 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 235 (622)
Q Consensus 156 ~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~ 235 (622)
..|+.+|+ ..+||||||+|||++||||+.+++++++||||++||..+.+.|.+.|.++++ ++|++++||++ .
T Consensus 445 GLdt~ige----~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~ 516 (559)
T COG4988 445 GLDTVIGE----GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--E 516 (559)
T ss_pred cccchhcc----CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--H
Confidence 34666766 4578999999999999999999999999999999999999999999999996 59999999997 4
Q ss_pred HHhhccceeeecCCceEEecChHHHH
Q psy2519 236 LIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 236 i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
...-+|+|++|++|+++..|..+++.
T Consensus 517 ~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 517 DAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HHhcCCEEEEecCCceeccCCHHHHh
Confidence 55789999999999999999999875
No 214
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-38 Score=333.77 Aligned_cols=226 Identities=18% Similarity=0.253 Sum_probs=183.4
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G 93 (622)
+.++++|++++|..++.++|+++|+++ .+|+.++++|+| ||||||||++|+|+.++. ...+|+|.++|
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I-----~~Ge~v~IvG~~-----GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDI-----KRNKVTAFIGPS-----GCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 467899999998545567999999999 677788888776 899999999999998631 11489999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
+++.. .+++.++||||++.+++ .|++||+.|+..... ...++...+.+.++++.++|.+..++.+++
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~---- 221 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDK---- 221 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhC----
Confidence 99852 35788999999998875 799999998754321 111222334567888998885433222222
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
....||||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++++ ++|||++||++ +.+.+.||||++|+
T Consensus 222 ~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Driivl~ 298 (329)
T PRK14257 222 AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDETVFFY 298 (329)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 1223999999999999999999999999999999999999999999999975 58999999996 67888899999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|+++..|+++++.
T Consensus 299 ~G~i~e~g~~~~l~ 312 (329)
T PRK14257 299 QGWIEEAGETKTIF 312 (329)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999999875
No 215
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-38 Score=323.69 Aligned_cols=221 Identities=19% Similarity=0.298 Sum_probs=182.6
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC---ceeeEEEEC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC---IIDGDIRVN 92 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~---~~~G~I~~~ 92 (622)
.+++++|++++| |+.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|.. ...|++.++
T Consensus 9 ~~i~~~~~~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 9 DVFNISRLYLYI--NDKAILKDITIKI-----PNNSIFGIMGPS-----GSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred hheeeeeEEEec--CCceeEeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 468899999996 7788999999999 677888888877 8999999999999998830 112555555
Q ss_pred CEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 93 GKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 93 G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
|+++.. ..++.++|++|++.+++.+||+||+.+....... ..+.+.++++.++++.+++.+ ..++.++.
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 153 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI--KEKREIKKIVEECLRKVGLWKEVYDRLNSPASQ- 153 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCccchhhhcCCccc-
Confidence 565532 3577899999999999999999999987543211 123344567889999999964 34555444
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ ..+.+.||+++
T Consensus 154 -------LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~-~~~~~~~d~v~ 223 (257)
T PRK14246 154 -------LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNP-QQVARVADYVA 223 (257)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 58999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 224 ~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 224 FLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999988764
No 216
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-38 Score=356.78 Aligned_cols=222 Identities=18% Similarity=0.295 Sum_probs=188.1
Q ss_pred CCcccCCccccccc---------cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee
Q psy2519 16 NNEEVPNVDFSEIV---------GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID 86 (622)
Q Consensus 16 ~~~~~~~~~~~~~~---------g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~ 86 (622)
.+++++||++.|.. ++.++++++|+++ .+|+.+.++|+| |||||||+|+|+|+.+ .+
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLlk~l~Gl~~----~~ 339 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTL-----RPGETLGLVGES-----GSGKSTTGLALLRLIN----SQ 339 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCcCC----CC
Confidence 36899999999842 2467999999999 677788888777 8999999999999984 38
Q ss_pred eEEEECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cc
Q psy2519 87 GDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NS 156 (622)
Q Consensus 87 G~I~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~ 156 (622)
|+|.++|+++.. .+++.+|||+|++ .+++.+||.||+.++...+.. ..+..+.+++++++++.+||. +.
T Consensus 340 G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~ 418 (529)
T PRK15134 340 GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPET 418 (529)
T ss_pred cEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHH
Confidence 999999998743 1356799999986 488999999999987543211 112334456788999999997 46
Q ss_pred cCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 157 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 157 ~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
.++.+.+ |||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++|||+ +++
T Consensus 419 ~~~~~~~--------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~ 489 (529)
T PRK15134 419 RHRYPAE--------FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVV 489 (529)
T ss_pred HhcCCcc--------CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHH
Confidence 7888766 9999999999999999999999999999999999999999999999875589999999996 688
Q ss_pred HhhccceeeecCCceEEecChHHHH
Q psy2519 237 IDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 237 ~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
.++||++++|++|+++..|+++++.
T Consensus 490 ~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 490 RALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred HHhcCeEEEEECCEEEEEcCHHHHh
Confidence 8999999999999999999988764
No 217
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=326.40 Aligned_cols=219 Identities=19% Similarity=0.273 Sum_probs=179.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+ |....+|+|.++|+
T Consensus 24 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~I~G~n-----GsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 91 (271)
T PRK14238 24 VFDTQNLNLWY--GEDHALKNINLDI-----HENEVTAIIGPS-----GCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ 91 (271)
T ss_pred EEEEeeeEEEE--CCcceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence 47899999986 5567999999999 677888888777 8999999999999987 21115899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC----CcccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL----MNSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~~ 164 (622)
++.. .+++.+||++|++.+++. ||.||+.++...... .+.....+.+.++++.+++ .+..++.+++
T Consensus 92 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~- 167 (271)
T PRK14238 92 NIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGI--KDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYG- 167 (271)
T ss_pred EcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchHHHHHhcCccc-
Confidence 8742 356789999999888874 999999987543211 1122234456777777754 3334555444
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||+++
T Consensus 168 -------LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~i~~~~d~i~ 237 (271)
T PRK14238 168 -------LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNM-QQAARISDKTA 237 (271)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 68999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 238 ~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 238 FFLNGYVNEYDDTDKIF 254 (271)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988763
No 218
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.9e-38 Score=355.99 Aligned_cols=219 Identities=22% Similarity=0.240 Sum_probs=186.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCCceeeEEEEC---
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDCIIDGDIRVN--- 92 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~~~~G~I~~~--- 92 (622)
++++||+++| |+.++++++|+++ .+|+.+.|+|+| |||||||||+|+|+. +| .+|+|.++
T Consensus 1 l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~iiG~n-----GsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~ 65 (520)
T TIGR03269 1 IEVKNLTKKF--DGKEVLKNISFTI-----EEGEVLGILGRS-----GAGKSVLMHVLRGMDQYEP---TSGRIIYHVAL 65 (520)
T ss_pred CEEEEEEEEE--CCeEeeeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhhcccCCC---CceEEEEeccc
Confidence 4688999987 6678999999999 677788888777 899999999999997 56 48999997
Q ss_pred --------------------CEecC----------c----cccccEEEEecC-CCCCCCCCHHHHHHHHHHcCCCccccH
Q psy2519 93 --------------------GKPVE----------G----KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKA 137 (622)
Q Consensus 93 --------------------G~~~~----------~----~~r~~igyV~Q~-~~l~~~lTV~E~l~f~~~l~~~~~~~~ 137 (622)
|.++. . ..++.+|||+|+ +.+++.+||+||+.+...... .+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~ 142 (520)
T TIGR03269 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEG 142 (520)
T ss_pred cccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCH
Confidence 32220 0 235679999997 678999999999998754332 233
Q ss_pred HHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2519 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217 (622)
Q Consensus 138 ~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l 217 (622)
.+.+++++++++.+||.+..++.+++ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 143 ~~~~~~~~~~l~~~gl~~~~~~~~~~--------LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 214 (520)
T TIGR03269 143 KEAVGRAVDLIEMVQLSHRITHIARD--------LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEA 214 (520)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCccc--------CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHH
Confidence 44556789999999998888888776 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHH
Q psy2519 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263 (622)
Q Consensus 218 ~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 263 (622)
+++.|+|||++|||+ +.+.++||++++|++|++++.|+++++.+.
T Consensus 215 ~~~~g~tviivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 215 VKASGISMVLTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HHhcCcEEEEEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 775699999999996 678889999999999999999999877654
No 219
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=355.11 Aligned_cols=216 Identities=20% Similarity=0.264 Sum_probs=185.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~--~~~~il~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTF--PGVKALDDISFDC-----RAGQVHALMGEN-----GAGKSTLLKILSGNYQP---DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEE--CCEEEEeeeeEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCEEEECCEEC
Confidence 57899999987 5677999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. .+++.+|||+|++.+++.+||.||+.++............+.+++++++++.+||.+..++.+++
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 140 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKY-------- 140 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhh--------
Confidence 53 24678999999999999999999999864211101112334456788999999998777888776
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i 218 (501)
T PRK11288 141 LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKDGRY 218 (501)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 688899999999999999
Q ss_pred EEecCh
Q psy2519 252 AFIGSK 257 (622)
Q Consensus 252 v~~G~~ 257 (622)
+..++.
T Consensus 219 ~~~~~~ 224 (501)
T PRK11288 219 VATFDD 224 (501)
T ss_pred EeecCc
Confidence 877653
No 220
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.6e-38 Score=355.07 Aligned_cols=219 Identities=21% Similarity=0.288 Sum_probs=185.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+|+ ..+|+|.++|+++.
T Consensus 2 l~i~~l~~~~--~~~~il~~isl~i-----~~Ge~~~liG~n-----GsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTF--GGVKALDGIDLEV-----RPGECVGLCGEN-----GAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEe--CCeEeecceEEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhCCCCCC-CCCeEEEECCEECC
Confidence 5789999987 6678999999999 677788888777 899999999999999862 13899999999875
Q ss_pred c-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-cccHHHHHHHHHHHHHHhCCCccc-CCccCCcCCCCcc
Q psy2519 98 G-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQ-HTRIGSSSITQKV 170 (622)
Q Consensus 98 ~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~v~~~~~~~~~ 170 (622)
. ..++.+|||+|++.+++.+||.||+.++....... ....++..++++++++.++|.+.. ++.+++
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~------- 141 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGD------- 141 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhh-------
Confidence 4 13567999999999999999999998865432110 012233456788999999998764 466666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +++.++||++++|++|+
T Consensus 142 -LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~-~~~~~~~d~i~~l~~G~ 218 (500)
T TIGR02633 142 -YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKL-NEVKAVCDTICVIRDGQ 218 (500)
T ss_pred -CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-HHHHHhCCEEEEEeCCe
Confidence 999999999999999999999999999999999999999999999986 699999999996 68889999999999999
Q ss_pred eEEecChHH
Q psy2519 251 TAFIGSKDA 259 (622)
Q Consensus 251 iv~~G~~~~ 259 (622)
++..|++++
T Consensus 219 i~~~~~~~~ 227 (500)
T TIGR02633 219 HVATKDMST 227 (500)
T ss_pred EeeecCccc
Confidence 999988764
No 221
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=327.61 Aligned_cols=217 Identities=20% Similarity=0.280 Sum_probs=180.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+|.. ..+|+|.++|+
T Consensus 39 ~l~i~~l~~~~--~~~~il~~is~~i-----~~Ge~~~I~G~n-----GsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~ 106 (285)
T PRK14254 39 VIEARDLNVFY--GDEQALDDVSMDI-----PENQVTAMIGPS-----GCGKSTFLRCINRMNDLIDAARVEGELTFRGK 106 (285)
T ss_pred eEEEEEEEEEE--CCEeeEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 46789999986 5678999999999 677788888877 8999999999999986200 14899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. ..++.++||+|++.+++. ||.||+.+...... ... +..++++++++.++|.+ ..++.+++
T Consensus 107 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~- 180 (285)
T PRK14254 107 NVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSGLD- 180 (285)
T ss_pred EccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCccc-
Confidence 8742 356789999999888885 99999998755432 122 23456889999999853 45666555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ + .|||++||++ +++.++|||++
T Consensus 181 -------LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~-~tiii~tH~~-~~i~~~~dri~ 250 (285)
T PRK14254 181 -------LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-E-YTVVIVTHNM-QQAARISDKTA 250 (285)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CEEEEEeCCH-HHHHhhcCEEE
Confidence 999999999999999999999999999999999999999999999976 3 7999999996 68888999975
Q ss_pred -eecCCceEEecChHHHH
Q psy2519 245 -LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 -~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 251 v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 251 VFLTGGELVEFDDTDKIF 268 (285)
T ss_pred EEeeCCEEEEeCCHHHHH
Confidence 67999999999988653
No 222
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=325.18 Aligned_cols=218 Identities=20% Similarity=0.270 Sum_probs=180.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCC--CCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVID--DCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~--~~~~~G~I~~~G 93 (622)
.+++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+..+ ....+|+|.++|
T Consensus 9 ~~l~i~~v~~~~--~~~~il~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 9 TVLRTENLNVYY--GSFLAVKNVWLDI-----PKNQITAFIGPS-----GCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred eEEEEeeeEEEE--CCEEEeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 357899999986 6678999999999 678888888877 89999999999999763 101489999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGS 163 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~ 163 (622)
+++.. ..++.+||++|++.+++. ||.||+.+...... .. .+..++++++++.+++.+ ..++.+.+
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 151 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQSGLS 151 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCCccc
Confidence 98741 356789999999888874 99999988754321 11 123345677788888743 34555444
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++|||+
T Consensus 152 --------LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~-~~~~~~~d~v 220 (264)
T PRK14243 152 --------LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNM-QQAARVSDMT 220 (264)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999975 48999999996 6899999999
Q ss_pred eeec---------CCceEEecChHHHH
Q psy2519 244 ILLA---------DSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~---------~G~iv~~G~~~~~~ 261 (622)
++|+ +|++++.|+++++.
T Consensus 221 ~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 221 AFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEEecccccccccCceEEEeCCHHHHH
Confidence 9998 89999999998774
No 223
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.8e-38 Score=335.02 Aligned_cols=183 Identities=22% Similarity=0.318 Sum_probs=163.8
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHH
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~ 141 (622)
|||||||||++|+|+.+| .+|+|.++|+++.. ..++.+||++|++.+++.+||+||+.|+.+.+. ..+.+.+
T Consensus 5 nGsGKSTLl~~iaGl~~p---~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~~~~ 78 (325)
T TIGR01187 5 SGCGKTTLLRLLAGFEQP---DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK---VPRAEIK 78 (325)
T ss_pred CCCCHHHHHHHHHCCCCC---CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC---CCHHHHH
Confidence 489999999999999998 58999999998854 246789999999999999999999999865432 2334445
Q ss_pred HHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q psy2519 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 221 (622)
Q Consensus 142 ~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~ 221 (622)
++++++++.++|.+..++.+.+ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~~--------LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPHQ--------LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHcCCcchhcCChhh--------CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 6789999999999888888766 99999999999999999999999999999999999999999999998756
Q ss_pred CCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 222 KKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 222 g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|+|+|++||++ +++.++|||+++|++|+++..|+++++.
T Consensus 151 g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 151 GITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999996 6888999999999999999999999875
No 224
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-38 Score=325.44 Aligned_cols=219 Identities=21% Similarity=0.294 Sum_probs=183.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
.++++||+++| ++.++++++|+++ ++|+.+.|+|+| |||||||+++|+|+.+|. ...+|+|.++|+
T Consensus 21 ~l~i~nl~~~~--~~~~il~~vs~~i-----~~Ge~~~I~G~n-----GsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~ 88 (276)
T PRK14271 21 AMAAVNLTLGF--AGKTVLDQVSMGF-----PARAVTSLMGPT-----GSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGR 88 (276)
T ss_pred EEEEeeEEEEE--CCEEEeeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhccCCcCCCCCCceEEEECCE
Confidence 46899999997 5678999999999 677788888776 899999999999999851 014899999999
Q ss_pred ecCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc----cCCccCCcC
Q psy2519 95 PVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS----QHTRIGSSS 165 (622)
Q Consensus 95 ~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~----~~~~v~~~~ 165 (622)
++.. ..++.++|++|++.+++ .||+||+.+...... ..+..+.++++.++++.++|.+. .++.+++
T Consensus 89 ~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~-- 163 (276)
T PRK14271 89 SIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR-- 163 (276)
T ss_pred EccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCccc--
Confidence 8742 35778999999998888 799999988653321 11333444567788999999743 3455444
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+++||+++
T Consensus 164 ------LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~dri~~ 234 (276)
T PRK14271 164 ------LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNL-AQAARISDRAAL 234 (276)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999975 48999999996 688899999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|+++..|+++++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 235 FFDGRLVEEGPTEQLF 250 (276)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999998764
No 225
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.3e-38 Score=319.26 Aligned_cols=210 Identities=21% Similarity=0.305 Sum_probs=176.0
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 6 ~~i~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 70 (225)
T PRK10247 6 PLLQLQNVGYLA--GDAKILNNISFSL-----RAGEFKLITGPS-----GCGKSTLLKIVASLISP---TSGTLLFEGED 70 (225)
T ss_pred ceEEEeccEEee--CCceeeeccEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccCC---CCCeEEECCEE
Confidence 457899999986 5677999999999 677788888777 89999999999999988 59999999998
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCcc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~ 170 (622)
+.. ..++.++|++|++.+++. ||+||+.+....+.. .. ..++++++++.+++. ...++.+.+
T Consensus 71 ~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~------- 137 (225)
T PRK10247 71 ISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKNIAE------- 137 (225)
T ss_pred cCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCCccc-------
Confidence 753 256789999999888875 999999886543321 11 134577899999996 466777666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec-CC
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DS 249 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~-~G 249 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|.|||++||++ +++ +.||++++|+ ++
T Consensus 138 -LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~-~~~d~i~~l~~~~ 214 (225)
T PRK10247 138 -LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEI-NHADKVITLQPHA 214 (225)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHH-HhCCEEEEEeccc
Confidence 9999999999999999999999999999999999999999999999875689999999996 566 4699999994 56
Q ss_pred ceEEecC
Q psy2519 250 RTAFIGS 256 (622)
Q Consensus 250 ~iv~~G~ 256 (622)
..+.+|.
T Consensus 215 ~~~~~~~ 221 (225)
T PRK10247 215 GEMQEAR 221 (225)
T ss_pred chHhhhh
Confidence 5555554
No 226
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=326.54 Aligned_cols=219 Identities=20% Similarity=0.311 Sum_probs=180.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++|. ++.++++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~~-~~~~il~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR-NGHTALRDASFTV-----PGGSIAALVGVN-----GSGKSTLFKALMGFVRL---ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec-CCcEEEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEh
Confidence 367899999873 3567999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cccc-cccEEEEecCCCCC--CCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EGKF-RSACGFMYQHDLFS--PSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~~~-r~~igyV~Q~~~l~--~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.... ++.++|++|++.+. ...+++|++.++...... ......+..++++++++.+||.+..++.+++ |
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------L 143 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGE--------L 143 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCccc--------C
Confidence 5433 34699999997542 234789998754211000 0011122345678899999999888888777 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||+++++ +|+++
T Consensus 144 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~ 220 (272)
T PRK15056 144 SGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVL 220 (272)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999987 699999999996 6888999999877 89999
Q ss_pred EecChHHH
Q psy2519 253 FIGSKDAA 260 (622)
Q Consensus 253 ~~G~~~~~ 260 (622)
+.|+++++
T Consensus 221 ~~g~~~~~ 228 (272)
T PRK15056 221 ASGPTETT 228 (272)
T ss_pred eecCHHhc
Confidence 99998865
No 227
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-38 Score=324.42 Aligned_cols=228 Identities=20% Similarity=0.255 Sum_probs=185.2
Q ss_pred cccceEEeecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--C
Q psy2519 6 STSKTVILFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--C 83 (622)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~ 83 (622)
|.|.|+---..+++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.++. .
T Consensus 9 ~~~~~~~~~~~~l~~~nl~~~~--~~~~~l~~vs~~i-----~~Ge~~~IiG~n-----GsGKSTLl~~l~Gl~~~~~~~ 76 (274)
T PRK14265 9 SDSATINPDHSVFEVEGVKVFY--GGFLALVDVHLKI-----PAKKIIAFIGPS-----GCGKSTLLRCFNRMNDLIPGA 76 (274)
T ss_pred ccccccCCCCceEEEeeEEEEe--CCeEEEeeeeeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccccccCC
Confidence 4444444444578899999986 5667999999999 678888888887 899999999999998631 1
Q ss_pred ceeeEEEECCEecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC---
Q psy2519 84 IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM--- 154 (622)
Q Consensus 84 ~~~G~I~~~G~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--- 154 (622)
..+|+|.++|+++.. .+++.++|++|++.+++. ||.||+.+....+. .. .+..+.+++.++.+++.
T Consensus 77 ~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l 151 (274)
T PRK14265 77 KVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEV 151 (274)
T ss_pred CcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhh
Confidence 148999999998742 356789999999888875 99999988754321 11 11234466778888874
Q ss_pred -cccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 155 -NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 155 -~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
+..++.+.+ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++
T Consensus 152 ~~~~~~~~~~--------LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~- 220 (274)
T PRK14265 152 KDKLKEKGTA--------LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNM- 220 (274)
T ss_pred HHHhcCCccc--------CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-
Confidence 334555444 999999999999999999999999999999999999999999999964 58999999996
Q ss_pred HHHHhhccceeeec---------CCceEEecChHHHH
Q psy2519 234 SELIDMFDKIILLA---------DSRTAFIGSKDAAL 261 (622)
Q Consensus 234 ~~i~~~~D~v~~L~---------~G~iv~~G~~~~~~ 261 (622)
+++.++|||+++|+ +|++++.|+++++.
T Consensus 221 ~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 221 QQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 68889999999997 89999999999774
No 228
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.3e-38 Score=353.98 Aligned_cols=220 Identities=21% Similarity=0.258 Sum_probs=186.1
Q ss_pred CcccCCccccccc---cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC-
Q psy2519 17 NEEVPNVDFSEIV---GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN- 92 (622)
Q Consensus 17 ~~~~~~~~~~~~~---g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~- 92 (622)
+++++||++.|.. |+.++++++|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i-----~~Ge~~~l~G~N-----GsGKSTLl~~l~Gl~~p---~~G~i~~~~ 345 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEV-----KEGEIFGIVGTS-----GAGKTTLSKIIAGVLEP---TSGEVNVRV 345 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEEec
Confidence 5889999999742 3457999999999 677788888887 89999999999999998 58999996
Q ss_pred CEe---cCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-----cc
Q psy2519 93 GKP---VEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-----SQ 157 (622)
Q Consensus 93 G~~---~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~ 157 (622)
|.+ +.. ..++.+|||+|++.+++.+||.||+.+...... +..+.+++++++++.+||.+ ..
T Consensus 346 g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~ 421 (520)
T TIGR03269 346 GDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLEL----PDELARMKAVITLKMVGFDEEKAEEIL 421 (520)
T ss_pred CCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCCCCCccchhhh
Confidence 642 211 235679999999889999999999988643321 22333467889999999975 45
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++++.+ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|.|||++|||+ +++.
T Consensus 422 ~~~~~~--------LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~ 492 (520)
T TIGR03269 422 DKYPDE--------LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVL 492 (520)
T ss_pred hCChhh--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHH
Confidence 777666 9999999999999999999999999999999999999999999999875699999999996 6888
Q ss_pred hhccceeeecCCceEEecChHHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~~ 262 (622)
++|||+++|++|+++..|+++++.+
T Consensus 493 ~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 493 DVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999887653
No 229
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.3e-38 Score=322.05 Aligned_cols=216 Identities=22% Similarity=0.293 Sum_probs=170.9
Q ss_pred cccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 18 EEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 18 ~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++++|+++.|..+ +.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~~ 67 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTI-----PPGKTVALVGSS-----GCGKSTVVSLLERFYDP---TSGEILLDGVDI 67 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEe-----cCCCEEEEEeCC-----CCCHHHHHHHHhccCCC---CCCEEEECCEeh
Confidence 3578999987432 256899999999 678888888887 89999999999999998 599999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHH-HH--HHHHHHHHHh--CCCcccCCccCCcCCC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ-RI--ALINSLLIEL--GLMNSQHTRIGSSSIT 167 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~-~~--~~v~~~l~~l--gL~~~~~~~v~~~~~~ 167 (622)
.. ..++.++|++|++.+++ .||+||+.+...... ..... .. ..+.+.++.+ ++....++.+.+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---- 139 (238)
T cd03249 68 RDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDAT---DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQ---- 139 (238)
T ss_pred hhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCCC---HHHHHHHHHHcChHHHHHhhccccceeeccCCcc----
Confidence 53 24577999999988876 699999987532211 01100 00 0123333444 444444555444
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++ +|+|||++||++ +++. .||++++|+
T Consensus 140 ----LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~-~~~~-~~d~v~~l~ 211 (238)
T cd03249 140 ----LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRL-STIR-NADLIAVLQ 211 (238)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCH-HHHh-hCCEEEEEE
Confidence 99999999999999999999999999999999999999999999996 589999999996 5665 899999999
Q ss_pred CCceEEecChHHHHH
Q psy2519 248 DSRTAFIGSKDAALA 262 (622)
Q Consensus 248 ~G~iv~~G~~~~~~~ 262 (622)
+|++++.|+.+++.+
T Consensus 212 ~G~i~~~~~~~~~~~ 226 (238)
T cd03249 212 NGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCCHHHHhh
Confidence 999999999877653
No 230
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.3e-38 Score=354.59 Aligned_cols=224 Identities=22% Similarity=0.283 Sum_probs=187.4
Q ss_pred CcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEEC
Q psy2519 17 NEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVN 92 (622)
Q Consensus 17 ~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~ 92 (622)
+++++||+++|..+ ..++++++|+++ .+|+.++++|+| |||||||||+|+|+++|. ...+|+|.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i-----~~Ge~~~iiG~n-----GsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 74 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQI-----EAGETLALVGES-----GSGKSVTALSILRLLPSPPVVYPSGDIRFH 74 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEE-----eCCCEEEEECCC-----CCcHHHHHHHHhcCCCCCcCCccceEEEEC
Confidence 57899999998432 357999999999 677888888777 899999999999999862 1148999999
Q ss_pred CEecCc----c---c-cccEEEEecCCC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc---ccCC
Q psy2519 93 GKPVEG----K---F-RSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHT 159 (622)
Q Consensus 93 G~~~~~----~---~-r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~ 159 (622)
|+++.. . . ++.+|||+|++. +.+.+||+|++.+...... ..+..+..++++++++.+||.+ ..++
T Consensus 75 g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (529)
T PRK15134 75 GESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD 152 (529)
T ss_pred CEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh
Confidence 998743 1 2 257999999864 6788999999987543221 1233445677899999999976 3577
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~ 239 (622)
++++ |||||||||+|||||+.+|++|||||||+|||+.++.++.++|++++++.|+|||++||++ +.+.++
T Consensus 153 ~~~~--------LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~ 223 (529)
T PRK15134 153 YPHQ--------LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKL 223 (529)
T ss_pred CCcc--------cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHh
Confidence 7666 9999999999999999999999999999999999999999999999875589999999996 678889
Q ss_pred ccceeeecCCceEEecChHHHH
Q psy2519 240 FDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
||||++|++|++++.|+++++.
T Consensus 224 ~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 224 ADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred cCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999988764
No 231
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.4e-38 Score=312.70 Aligned_cols=199 Identities=19% Similarity=0.244 Sum_probs=172.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 1 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~p---~~G~v~~~g~~~ 65 (204)
T PRK13538 1 MLEARNLACER--DERILFSGLSFTL-----NAGELVQIEGPN-----GAGKTSLLRILAGLARP---DAGEVLWQGEPI 65 (204)
T ss_pred CeEEEEEEEEE--CCEEEEecceEEE-----CCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEEc
Confidence 36789999986 5677999999999 678888888887 89999999999999998 589999999987
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.. ..++.++|++|++.+++.+||.||+.+...... . +..++++++++.+||.+..++.+.+ ||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~~~--------LS 131 (204)
T PRK13538 66 RRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPVRQ--------LS 131 (204)
T ss_pred ccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCChhh--------cC
Confidence 53 356789999999999999999999998764432 0 1235678999999998878887766 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ +|.|||++||++ +.+.+..+|++++
T Consensus 132 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 132 AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCh-hhhccCCceEEec
Confidence 9999999999999999999999999999999999999999999986 689999999996 5776666777766
No 232
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-38 Score=320.03 Aligned_cols=218 Identities=24% Similarity=0.331 Sum_probs=169.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|++++|. ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~~-~~~~~l~~isl~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD-EKKPVLKDINFSI-----KPGETVAIVGPT-----GAGKTTLINLLMRFYDP---QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC-CCCccccceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCCEEEECCEeH
Confidence 357899999873 2356999999999 677777888776 89999999999999998 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh--CCCcccCCccCCcCCCCcc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~~~~~~~~ 170 (622)
.. ..++.++|++|++.+++. ||.||+.+...................++.++.+ ++....++.+.+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------- 139 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGN------- 139 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCc-------
Confidence 53 357789999999888876 9999998753211000000000001122333333 344444444444
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|++++ +|+|||++||++ +++. .||++++|++|+
T Consensus 140 -LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~-~~~~-~~d~i~~l~~g~ 214 (229)
T cd03254 140 -LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRL-STIK-NADKILVLDDGK 214 (229)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCH-HHHh-hCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999995 389999999997 4664 699999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+.+++.
T Consensus 215 ~~~~~~~~~~~ 225 (229)
T cd03254 215 IIEEGTHDELL 225 (229)
T ss_pred EEEeCCHHHHH
Confidence 99999887654
No 233
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.8e-38 Score=312.26 Aligned_cols=201 Identities=21% Similarity=0.260 Sum_probs=175.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|++++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSR--NEEPVFGPLDFHV-----DAGEALLVQGDN-----GAGKTTLLRVLAGLLHV---ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEec--CCceeeecceEEE-----CCCCEEEEEcCC-----CCCHHHHHHHHhCCCCC---CCeeEEECCEEc
Confidence 46789999986 5667999999999 677888888887 89999999999999998 489999999988
Q ss_pred Cc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 97 EG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 97 ~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
.. ..++.++|++|++.+++.+|+.||+.+....+. .. ..++++++++.++|.+..++.+.+ ||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 141 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLVRQ--------LSAG 141 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCChhh--------CCHH
Confidence 64 345679999999999999999999988754432 11 234567889999998888888776 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||++|||+++.+|++++|||||+|||+.++..+.+.|+++++ +|.|+|++||++ +++.++||++++++.
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 142 QKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999999999999987 689999999996 689999999999864
No 234
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-38 Score=353.48 Aligned_cols=222 Identities=18% Similarity=0.259 Sum_probs=186.0
Q ss_pred CcccCCccccccc-cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIV-GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~-g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+++++||++.|.. |+.++++++|+++ .+|+.+.++|+| |||||||+|+|+|+.+|. .+|+|.++|++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i-----~~Ge~~~l~G~N-----GsGKSTLlk~i~Gl~~~~--~~G~i~~~g~~ 326 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSL-----RRGEILGIAGLV-----GAGRTELVQCLFGAYPGR--WEGEIFIDGKP 326 (506)
T ss_pred eEEEecCccccccccccccccceeeEE-----cCCcEEEEeCCC-----CCCHHHHHHHHhCCCCCC--CCcEEEECCEE
Confidence 5789999998743 3467999999999 677788888877 899999999999999831 48999999998
Q ss_pred cCc-----cccccEEEEecCC---CCCCCCCHHHHHHHHHH--cCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCc
Q psy2519 96 VEG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMAL--LKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSS 164 (622)
Q Consensus 96 ~~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~--l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~ 164 (622)
++. ..++.+|||+|++ .+++.+||.||+.+... ..........+.+++++++++.++|. +..++++++
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 405 (506)
T PRK13549 327 VKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIAR- 405 (506)
T ss_pred CCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccccc-
Confidence 753 2356799999985 47889999999987632 11100012233446788999999996 577888777
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.++|+++++ +|+|||++|||+ +++.++|||++
T Consensus 406 -------LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~-~~~~~~~d~v~ 476 (506)
T PRK13549 406 -------LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSEL-PEVLGLSDRVL 476 (506)
T ss_pred -------CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 68899999999
Q ss_pred eecCCceEEecChHHH
Q psy2519 245 LLADSRTAFIGSKDAA 260 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~ 260 (622)
+|++|+++..|+++++
T Consensus 477 ~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 477 VMHEGKLKGDLINHNL 492 (506)
T ss_pred EEECCEEEEEeccccC
Confidence 9999999999987654
No 235
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.9e-38 Score=361.19 Aligned_cols=212 Identities=20% Similarity=0.294 Sum_probs=176.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|.|+ ++.++|+++|+++ ++|+.++++|++ |||||||+++|+|+. | .+|+|.+||.++
T Consensus 349 ~i~~~~vsf~~~-~~~~vL~~i~l~i-----~~G~~vaIvG~S-----GsGKSTL~~lL~g~~-p---~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP-DGKTLAGPLNFTL-----PAGQRIALVGPS-----GAGKTSLLNALLGFL-P---YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc-CCCeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCC-C---CCcEEEECCEec
Confidence 588999998763 4567999999999 788888888775 899999999999999 7 489999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCCcC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSS 165 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~~~ 165 (622)
.+ .+|+.+|||+|++.+|+. |++|||.++.. ..+++ +++++++..++ ++..|+.+|+
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge-- 481 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASDE----QLQQALENAWVSEFLPLLPQGLDTPIGD-- 481 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCHH----HHHHHHHHhCHHHHHHhccccccccccc--
Confidence 65 478999999999998876 99999998631 11222 23334444333 3456777776
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
....||||||||++|||||+.+|++|+||||||+||+.+..++.+.|+++. .++|+|++||++ ...+.||+|++
T Consensus 482 --~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iiv 555 (588)
T PRK11174 482 --QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWV 555 (588)
T ss_pred --CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEE
Confidence 234599999999999999999999999999999999999999999999986 479999999997 34567999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+.+++.
T Consensus 556 l~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 556 MQDGQIVQQGDYAELS 571 (588)
T ss_pred EeCCeEeecCCHHHHH
Confidence 9999999999998875
No 236
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-38 Score=301.13 Aligned_cols=219 Identities=22% Similarity=0.286 Sum_probs=189.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++.+||+++. .++.++++|++.+ .+|+...|+||| |||||||||.|+|.+.| .+|++.+||.++
T Consensus 1 mi~a~nls~~~--~Gr~ll~~vsl~~-----~pGev~ailGPN-----GAGKSTlLk~LsGel~p---~~G~v~~~g~~l 65 (259)
T COG4559 1 MIRAENLSYSL--AGRRLLDGVSLDL-----RPGEVLAILGPN-----GAGKSTLLKALSGELSP---DSGEVTLNGVPL 65 (259)
T ss_pred CeeeeeeEEEe--ecceeccCcceec-----cCCcEEEEECCC-----CccHHHHHHHhhCccCC---CCCeEeeCCcCh
Confidence 46788999884 6678999999999 788888999888 79999999999999999 489999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
+. ++.++-+.++|+..+-...||.|-+.++..-..... ...+..+.+++.++..++.+.+.+.... |
T Consensus 66 ~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~-~~~e~~~i~~~ala~~d~~~la~R~y~~--------L 136 (259)
T COG4559 66 NSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR-EPEEDERIAAQALAATDLSGLAGRDYRT--------L 136 (259)
T ss_pred hhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCC-CchhhHHHHHHHHHHcChhhhhccchhh--------c
Confidence 65 456778999999888777899999999864432111 2234455678999999999988887766 9
Q ss_pred ChHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 173 SGGERKRLSFATELLT------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||.+||.|+. ++++||||||||.||...+..++++.+++++ +|..|+++.||. +....+||||++|
T Consensus 137 SGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~-~g~~V~~VLHDL-NLAA~YaDrivll 214 (259)
T COG4559 137 SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR-EGGAVLAVLHDL-NLAAQYADRIVLL 214 (259)
T ss_pred CchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHh-cCCcEEEEEccc-hHHHHhhheeeee
Confidence 9999999999999985 3459999999999999999999999999999 689999999997 6888999999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++||++..|+|++++
T Consensus 215 ~~Grv~a~g~p~~vl 229 (259)
T COG4559 215 HQGRVIASGSPQDVL 229 (259)
T ss_pred eCCeEeecCCHHHhc
Confidence 999999999999875
No 237
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.2e-37 Score=316.85 Aligned_cols=224 Identities=17% Similarity=0.164 Sum_probs=179.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++++++|+++ ++|+.++++|+| |||||||+++|+|+. +| .+|+|.++|+
T Consensus 1 ~i~~~nl~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~ 65 (248)
T PRK09580 1 MLSIKDLHVSV--EDKAILRGLNLEV-----RPGEVHAIMGPN-----GSGKSTLSATLAGREDYEV---TGGTVEFKGK 65 (248)
T ss_pred CeEEEEEEEEe--CCeeeeecceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCccCCC---CceEEEECCC
Confidence 36789999987 4567999999999 677888888877 899999999999995 46 5899999998
Q ss_pred ecCc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHH-cCC--C-ccccHHHHHHHHHHHHHHhCCC-cccCCccC-C
Q psy2519 95 PVEG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMAL-LKL--D-RRVKAYQRIALINSLLIELGLM-NSQHTRIG-S 163 (622)
Q Consensus 95 ~~~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~-l~~--~-~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~ 163 (622)
++.. . .++.++|++|++.+++.+|+.+++.+... ... . ......+..+++++.++.+++. +..++.+. +
T Consensus 66 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 145 (248)
T PRK09580 66 DLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVG 145 (248)
T ss_pred ccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCC
Confidence 8753 1 23579999999999998888877654321 110 0 0011223345678899999995 44555543 3
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh-ccc
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDK 242 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~-~D~ 242 (622)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++ +.+... +|+
T Consensus 146 --------LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~-~~~~~~~~d~ 215 (248)
T PRK09580 146 --------FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQ-RILDYIKPDY 215 (248)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHhhhCCE
Confidence 999999999999999999999999999999999999999999999986 689999999996 567666 899
Q ss_pred eeeecCCceEEecChHHHHHHHHh
Q psy2519 243 IILLADSRTAFIGSKDAALAFLES 266 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~~~~~~ 266 (622)
+++|++|++++.|+++.+ +.++.
T Consensus 216 i~~l~~g~i~~~g~~~~~-~~~~~ 238 (248)
T PRK09580 216 VHVLYQGRIVKSGDFTLV-KQLEE 238 (248)
T ss_pred EEEEECCeEEEeCCHHHH-HHHHh
Confidence 999999999999998855 34443
No 238
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-38 Score=339.71 Aligned_cols=216 Identities=24% Similarity=0.291 Sum_probs=194.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|++|+| |.+++|++|||++ .+|+...++|.| |||||||+|+|+|..+| ++|+|.++|++.
T Consensus 8 ll~~~~i~K~F--ggV~AL~~v~l~v-----~~GEV~aL~GeN-----GAGKSTLmKiLsGv~~p---~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF--GGVKALDGVSLTV-----RPGEVHALLGEN-----GAGKSTLMKILSGVYPP---DSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc--CCceeeccceeEE-----eCceEEEEecCC-----CCCHHHHHHHHhCcccC---CCceEEECCEEc
Confidence 46799999995 9999999999999 688888888888 79999999999999999 599999999998
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC-CccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
.. .....|+.|+|+..|.|+|||.||+.++..... ...++.++.++++.++|+.+|+....++++++
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~------- 145 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD------- 145 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhh-------
Confidence 53 257889999999999999999999988765433 22356667788899999999996558888888
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||.||||.|+|||||..++++|+|||||+.|+...+..++++++++++ +|.+||++||.+ +|++++|||+.+|+||+
T Consensus 146 -LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~ 222 (500)
T COG1129 146 -LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYISHRL-DEVFEIADRITVLRDGR 222 (500)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCcH-HHHHHhcCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999997 799999999996 79999999999999999
Q ss_pred eEEecCh
Q psy2519 251 TAFIGSK 257 (622)
Q Consensus 251 iv~~G~~ 257 (622)
.+..++.
T Consensus 223 ~v~~~~~ 229 (500)
T COG1129 223 VVGTRPT 229 (500)
T ss_pred Eeeeccc
Confidence 9998883
No 239
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=5.5e-38 Score=307.70 Aligned_cols=185 Identities=37% Similarity=0.645 Sum_probs=162.5
Q ss_pred CcccCCcccccccc----ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCCceeeEEE
Q psy2519 17 NEEVPNVDFSEIVG----SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDCIIDGDIR 90 (622)
Q Consensus 17 ~~~~~~~~~~~~~g----~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~~~~G~I~ 90 (622)
.++++||++.|..+ +.++++++|+++ .+|+.+.++|+| |||||||+++|+|+. +| .+|+|.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i-----~~Ge~~~l~G~n-----GsGKStLl~~i~Gl~~~~~---~~G~i~ 69 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKA-----KPGELTAIMGPS-----GAGKSTLLNALAGRRTGLG---VSGEVL 69 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCCCC---CceEEE
Confidence 36789999998432 367999999999 677888888777 899999999999999 87 589999
Q ss_pred ECCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 91 VNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 91 ~~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
++|+++.. ..++.++|++|++.+++.+|++||+.+..... +
T Consensus 70 ~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--------------------------------~------ 111 (194)
T cd03213 70 INGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--------------------------------G------ 111 (194)
T ss_pred ECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--------------------------------c------
Confidence 99999865 46778999999999999999999997653110 4
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|++||++..++.+.||++++|++|
T Consensus 112 --LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 112 --LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999986 59999999999744688899999999999
Q ss_pred ceEEec
Q psy2519 250 RTAFIG 255 (622)
Q Consensus 250 ~iv~~G 255 (622)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998764
No 240
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=318.60 Aligned_cols=216 Identities=19% Similarity=0.227 Sum_probs=179.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~~ 95 (622)
+.++++++.| |+.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+|.. ..+|+|.++|++
T Consensus 9 ~~~~~~~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~ 76 (261)
T PRK14263 9 MDCKLDKIFY--GNFMAVRDSHVPI-----RKNEITGFIGPS-----GCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQD 76 (261)
T ss_pred EEEEeEEEEe--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcccccccCCCCceEEEECCEe
Confidence 4567777775 7778999999999 678888888887 8999999999999997610 148999999998
Q ss_pred cCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc----CCccCCcC
Q psy2519 96 VEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ----HTRIGSSS 165 (622)
Q Consensus 96 ~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~v~~~~ 165 (622)
+.. ..++.++|++|++.++ .+|+.||+.+....+. .. .+..++++++++.++|.+.. ++.+++
T Consensus 77 i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~-- 149 (261)
T PRK14263 77 VYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---YK-GDLGDRVKHALQGAALWDEVKDKLKVSGLS-- 149 (261)
T ss_pred ccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---ch-HHHHHHHHHHHHHcCCchhhhhhhhCCccc--
Confidence 742 2467899999998877 5999999998765432 11 22345788999999986432 333333
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||++|||||+.+|++|+|||||+|||+.++.++.+.|+++++ ++|+|++||++ +++.++|||+++
T Consensus 150 ------LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~--~~tii~isH~~-~~i~~~~d~v~~ 220 (261)
T PRK14263 150 ------LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK--DYTIALVTHNM-QQAIRVADTTAF 220 (261)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999953 68999999996 678899999999
Q ss_pred ec--------CCceEEecChHHHH
Q psy2519 246 LA--------DSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~--------~G~iv~~G~~~~~~ 261 (622)
|+ +|+++..|+++++.
T Consensus 221 l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 221 FSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EecccccccCCceEEEeCCHHHHH
Confidence 95 89999999988764
No 241
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-38 Score=306.85 Aligned_cols=187 Identities=33% Similarity=0.588 Sum_probs=161.9
Q ss_pred cCCcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEE
Q psy2519 15 KNNEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIR 90 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~ 90 (622)
|..++++|+++.|..+ +.++++++|+++ ++|+.+.++|+| ||||||||++|+|+.. | .+|+|.
T Consensus 1 ~~~l~~~~l~~~~~~~~~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~~~---~~G~i~ 67 (192)
T cd03232 1 GSVLTWKNLNYTVPVKGGKRQLLNNISGYV-----KPGTLTALMGES-----GAGKTTLLDVLAGRKTAGV---ITGEIL 67 (192)
T ss_pred CcEEEEeeeEEEecCCCCceEeEEccEEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhCCCcCCC---cceEEE
Confidence 3456899999998432 267999999999 577788888776 8999999999999864 4 589999
Q ss_pred ECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 91 VNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 91 ~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
++|+++....++.++|++|++.+++.+||+||+.+.... + +
T Consensus 68 ~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~-------------~------- 108 (192)
T cd03232 68 INGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R-------------G------- 108 (192)
T ss_pred ECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h-------------c-------
Confidence 999988655677899999999999999999999875311 0 4
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC-C
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-S 249 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~-G 249 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|+|++||++..++.+.||++++|++ |
T Consensus 109 -LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 109 -LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred -CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999986 6899999999973246789999999998 9
Q ss_pred ceEEec
Q psy2519 250 RTAFIG 255 (622)
Q Consensus 250 ~iv~~G 255 (622)
++++.|
T Consensus 187 ~i~~~g 192 (192)
T cd03232 187 KTVYFG 192 (192)
T ss_pred eEEeCC
Confidence 999865
No 242
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=317.70 Aligned_cols=218 Identities=19% Similarity=0.263 Sum_probs=180.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~~ 95 (622)
++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.. |....+|+|.++|++
T Consensus 4 l~~~~v~~~~--~~~~~l~~~s~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~ 71 (250)
T PRK14266 4 IEVENLNTYF--DDAHILKNVNLDI-----PKNSVTALIGPS-----GCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD 71 (250)
T ss_pred EEEEeEEEEe--CCeEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhhccCCCCCCccEEEECCEE
Confidence 5689999986 5677999999999 677788888777 8999999999999864 211148999999998
Q ss_pred cCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCcC
Q psy2519 96 VEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSS 165 (622)
Q Consensus 96 ~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~~ 165 (622)
+.. ..++.++|++|++.+++. |+.||+.+....... ...+..++++.++++.+++.+ ..++.+++
T Consensus 72 i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~-- 146 (250)
T PRK14266 72 IYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGE--DDEDFIEERVEESLKAAALWDEVKDKLDKSALG-- 146 (250)
T ss_pred cccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCC--CCHHHHHHHHHHHHHHcCCchhHHHHHhCCccc--
Confidence 742 356789999999988885 999999886543211 122334567888999999853 33555444
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++ .++.+.+|++++
T Consensus 147 ------LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~-~~~~~~~~~i~~ 217 (250)
T PRK14266 147 ------LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNM-QQATRVSKYTSF 217 (250)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCH-HHHHhhcCEEEE
Confidence 999999999999999999999999999999999999999999999953 78999999996 688899999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 218 FLNGEIIESGLTDQIF 233 (250)
T ss_pred EECCeEEEeCCHHHHH
Confidence 9999999999988764
No 243
>KOG0055|consensus
Probab=100.00 E-value=3.9e-37 Score=355.21 Aligned_cols=227 Identities=23% Similarity=0.336 Sum_probs=183.5
Q ss_pred EeecCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEE
Q psy2519 12 ILFKNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIR 90 (622)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~ 90 (622)
-..+..+|++||.|+|+.. ++++|+++|+.+ .+|+.+.++|+ |||||||++++|.++..| .+|+|+
T Consensus 345 ~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i-----~~G~~valVG~-----SGsGKST~i~LL~RfydP---~~G~V~ 411 (1228)
T KOG0055|consen 345 SSIKGEIEFRNVCFSYPSRPDVKILKGVSLKI-----PSGQTVALVGP-----SGSGKSTLIQLLARFYDP---TSGEVL 411 (1228)
T ss_pred cccccceEEEEEEecCCCCCcchhhCCeEEEe-----CCCCEEEEECC-----CCCCHHHHHHHHHHhcCC---CCceEE
Confidence 3456889999999999765 478999999999 56666666655 489999999999999999 599999
Q ss_pred ECCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 91 VNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 91 ~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
+||.|+.. .+|.+||.|+|+|.||. .|++||+.|+..-.......+..+.+.+.+.+. .|.+..++.+|+.
T Consensus 412 idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~-- 486 (1228)
T KOG0055|consen 412 IDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFIL--KLPDGYDTLVGER-- 486 (1228)
T ss_pred EcCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH--hhHHhhcccccCC--
Confidence 99999875 47999999999997775 599999999742211011111111122233333 4566788998872
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
...||||||||++|||||+.+|+|||||||||+||+.+...+.+.|.+.. .|+|.|+++|+. +.+.. +|+|++|
T Consensus 487 --g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRL-StIrn-aD~I~v~ 560 (1228)
T KOG0055|consen 487 --GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRL-STIRN-ADKIAVM 560 (1228)
T ss_pred --CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeeh-hhhhc-cCEEEEE
Confidence 12399999999999999999999999999999999999999999999986 489999999997 56755 9999999
Q ss_pred cCCceEEecChHHHHH
Q psy2519 247 ADSRTAFIGSKDAALA 262 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~~ 262 (622)
++|+|++.|+++|++.
T Consensus 561 ~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 561 EEGKIVEQGTHDELIA 576 (1228)
T ss_pred ECCEEEEecCHHHHHh
Confidence 9999999999999874
No 244
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.3e-38 Score=366.37 Aligned_cols=214 Identities=25% Similarity=0.302 Sum_probs=180.7
Q ss_pred ecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 14 FKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
..+.++++||+|+|+.++.++|+++|+++ ++|++++++|++ |||||||+|+|+|+.+| .+|+|.+||
T Consensus 448 ~~~~I~~~nvsf~Y~~~~~~vL~~isl~i-----~~Ge~vaIvG~s-----GsGKSTLlklL~gl~~p---~~G~I~idg 514 (686)
T TIGR03797 448 LSGAIEVDRVTFRYRPDGPLILDDVSLQI-----EPGEFVAIVGPS-----GSGKSTLLRLLLGFETP---ESGSVFYDG 514 (686)
T ss_pred CCceEEEEEEEEEcCCCCccceeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCEEEECC
Confidence 34568999999998645578999999999 788888888776 89999999999999999 599999999
Q ss_pred EecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccC
Q psy2519 94 KPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIG 162 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~ 162 (622)
+++.. .+|+.+|||+|++.+++. |++|||.++.. .+. +++.++++..|+.+ ..|+.++
T Consensus 515 ~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ig 583 (686)
T TIGR03797 515 QDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMHTVIS 583 (686)
T ss_pred EEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhcccccccccc
Confidence 99875 479999999999998876 99999988632 122 23455666666543 4466676
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ....||||||||++|||||+.+|++|+||||||+||+.+.+++.+.|+++ ++|+|++||++ +..+.+|+
T Consensus 584 e----~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~ 653 (686)
T TIGR03797 584 E----GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADR 653 (686)
T ss_pred C----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCE
Confidence 5 23569999999999999999999999999999999999999999999875 47999999997 44567999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
|++|++|++++.|+.+++.
T Consensus 654 Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999999875
No 245
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=360.96 Aligned_cols=216 Identities=22% Similarity=0.305 Sum_probs=180.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|+.++.++|+++|+++ ++|++++|+|++ |||||||+++|+|+.+| .+|+|.+||++
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i-----~~G~~~aIvG~s-----GsGKSTLl~ll~gl~~p---~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKI-----PAGKTVALVGRS-----GSGKSTIANLLTRFYDI---DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEe-----CCCCEEEEECCC-----CCCHHHHHHHHHhccCC---CCceEEECCEE
Confidence 458999999998544578999999999 788888888776 89999999999999999 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~~ 164 (622)
++. .+++.++||+|++.+++. |++|||.++.. ...++ ++++++++..|+ ++..|+.+|+
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~- 476 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFND-TIANNIAYART----EQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGE- 476 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCC----CCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCC-
Confidence 865 478899999999998875 99999988521 11122 234445555553 3446777776
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
..+.||||||||++|||||+++|++|+||||||+||+.+..++.+.|+++. +++|+|++||++ ...+.||+|+
T Consensus 477 ---~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii 549 (582)
T PRK11176 477 ---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEIL 549 (582)
T ss_pred ---CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEE
Confidence 234599999999999999999999999999999999999999999999985 479999999997 4567899999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+.+++.
T Consensus 550 ~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 550 VVEDGEIVERGTHAELL 566 (582)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999998775
No 246
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.6e-38 Score=315.92 Aligned_cols=211 Identities=26% Similarity=0.339 Sum_probs=169.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++.|..++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i-----~~G~~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTI-----RAGEKVAIIGRV-----GSGKSTLLKLLAGLYKP---TSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCCeEEECCEEhH
Confidence 5789999997433357999999999 677788888777 89999999999999988 5899999999874
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCC---cCCCCcc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS---SSITQKV 170 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~---~~~~~~~ 170 (622)
. ..++.++|++|++.+++ .||.||+.+.... .. .+++.++++.+++.+..++.+.. ..-....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 3 24678999999988877 6999999774211 11 12355778888887666554310 0000122
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ + +|||++||++ +.+ ++||++++|++|+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~-~~~-~~~d~v~~l~~g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-D-KTLIIITHRP-SLL-DLVDRIIVMDSGR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C-CEEEEEeCCH-HHH-HhCCEEEEEeCCe
Confidence 3999999999999999999999999999999999999999999999975 3 8999999997 454 7999999999999
Q ss_pred eEEec
Q psy2519 251 TAFIG 255 (622)
Q Consensus 251 iv~~G 255 (622)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 98754
No 247
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-38 Score=317.58 Aligned_cols=212 Identities=25% Similarity=0.345 Sum_probs=169.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|. ++..+++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~-~~~~~l~~i~~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~Gl~~~---~~G~v~~~g~~~~ 66 (236)
T cd03253 1 IEFENVTFAYD-PGRPVLKDVSFTI-----PAGKKVAIVGPS-----GSGKSTILRLLFRFYDV---SSGSILIDGQDIR 66 (236)
T ss_pred CEEEEEEEEeC-CCCceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccCC---CCCEEEECCEEhh
Confidence 35789999863 3456899999999 677788888777 89999999999999988 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHH-----HHHHHHHHHh--CCCcccCCccCCcCC
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-----ALINSLLIEL--GLMNSQHTRIGSSSI 166 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~v~~~~~ 166 (622)
. .+++.+||++|++.+++ .||.||+.+..... ...+.. ..+.+.++.+ ++....++.+.+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~-----~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--- 137 (236)
T cd03253 67 EVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPDA-----TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLK--- 137 (236)
T ss_pred hCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCCC-----CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc---
Confidence 3 35678999999988886 69999998863211 111111 1122333333 333334444444
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||++ +.+. .||++++|
T Consensus 138 -----LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~-~~~~-~~d~~~~l 208 (236)
T cd03253 138 -----LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRL-STIV-NADKIIVL 208 (236)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH-HHHH-hCCEEEEE
Confidence 999999999999999999999999999999999999999999999964 89999999996 5665 59999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++..|+.+++.
T Consensus 209 ~~g~i~~~~~~~~~~ 223 (236)
T cd03253 209 KDGRIVERGTHEELL 223 (236)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999887654
No 248
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.7e-37 Score=311.06 Aligned_cols=202 Identities=23% Similarity=0.254 Sum_probs=171.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
+.++|+++.| |+.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 23 l~~~~~~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~ 87 (224)
T cd03220 23 LGILGRKGEV--GEFWALKDVSFEV-----PRGERIGLIGRN-----GAGKSTLLRLLAGIYPP---DSGTVTVRGRVSS 87 (224)
T ss_pred hhhhhhhhhc--CCeEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEch
Confidence 4677888864 7888999999999 678888888887 89999999999999998 5899999998753
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
. ..+...+.+.+||+||+.+...... ....+.+++++++++.++|.+..++.+++ ||||||
T Consensus 88 ~--------~~~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSgG~~ 148 (224)
T cd03220 88 L--------LGLGGGFNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPVKT--------YSSGMK 148 (224)
T ss_pred h--------hcccccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh--------CCHHHH
Confidence 1 1122345678999999998765432 12234455678899999999888888776 999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||++|||+|+.+|+++||||||+|||+.++.++.+.|+++++ +|+|||++||++ +++.+.+|++++|++|++++.|
T Consensus 149 qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 149 ARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK-QGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999987 589999999996 6788899999999999998765
No 249
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=9.4e-38 Score=307.75 Aligned_cols=195 Identities=21% Similarity=0.277 Sum_probs=170.4
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~i~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (201)
T cd03231 1 LEADELTCER--DGRALFSGLSFTL-----AAGEALQVTGPN-----GSGKTTLLRILAGLSPP---LAGRVLLNGGPLD 65 (201)
T ss_pred CEEEEEEEEe--CCceeeccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEecc
Confidence 3688999986 6677999999999 677888888777 89999999999999998 4899999999874
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. .+++.++|++|++.+++.+||+||+.+..... ..++++++++.+++.+..++.+.+ |||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---------~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 128 (201)
T cd03231 66 FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADH---------SDEQVEEALARVGLNGFEDRPVAQ--------LSA 128 (201)
T ss_pred cccHHhhhheEEeccccccCCCcCHHHHHHhhcccc---------cHHHHHHHHHHcCChhhhcCchhh--------CCH
Confidence 3 36788999999999999999999998853211 134578899999998888887666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||++|||+|+.+|++++|||||+|||+.++.++.+.|+++++ +|.|+|++||++ .+....+|+++++
T Consensus 129 G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 129 GQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCc-hhhhhccceeEec
Confidence 999999999999999999999999999999999999999999986 689999999997 5777899999887
No 250
>KOG0058|consensus
Probab=100.00 E-value=2.1e-38 Score=347.91 Aligned_cols=225 Identities=21% Similarity=0.331 Sum_probs=189.2
Q ss_pred eecCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 13 LFKNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
.-.+.++++||+|+|+.. ++++|+|+|+++ ++|+.++++||+ |+||||+.++|-.+..| .+|+|++
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti-----~pGe~vALVGPS-----GsGKSTiasLL~rfY~P---tsG~Ill 527 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTI-----RPGEVVALVGPS-----GSGKSTIASLLLRFYDP---TSGRILL 527 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeee-----CCCCEEEEECCC-----CCCHHHHHHHHHHhcCC---CCCeEEE
Confidence 456789999999999866 578999999999 677788887665 89999999999999999 5999999
Q ss_pred CCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 92 NGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 92 ~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
||+|+.+ .+|++||+|.|||.||.. ||+|||.|+........+....+.+.+++.+. ++++..|+.+|+.
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEk--- 601 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEK--- 601 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHH--hCccccccccCCc---
Confidence 9999976 379999999999999987 99999999875221111111222233444444 5677899999982
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
...||||||||++|||||+.||+||||||-||+||..+...|.+.|.++.+ ++|||++.|.. ...+.+|+|++++
T Consensus 602 -G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRL--STV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 602 -GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRL--STVRHADQIVVID 676 (716)
T ss_pred -cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhh--hHhhhccEEEEEc
Confidence 235999999999999999999999999999999999999999999999985 59999999996 3457899999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|++++.|+.+|++
T Consensus 677 ~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 677 KGRVVEMGTHDELL 690 (716)
T ss_pred CCeEEecccHHHHh
Confidence 99999999999876
No 251
>KOG0057|consensus
Probab=100.00 E-value=2.3e-38 Score=336.82 Aligned_cols=220 Identities=27% Similarity=0.413 Sum_probs=185.7
Q ss_pred ceEEeecCCcccCCccccccccce-eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee
Q psy2519 9 KTVILFKNNEEVPNVDFSEIVGSV-QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG 87 (622)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G 87 (622)
.++-.+++.++++||+|+| |+. ++|+++|+++ .+|+++.|+|+| ||||||+||+|.+.... +|
T Consensus 343 ~~i~~~~~~I~F~dV~f~y--~~k~~iL~gvsf~I-----~kGekVaIvG~n-----GsGKSTilr~LlrF~d~----sG 406 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSY--GPKRKVLKGVSFTI-----PKGEKVAIVGSN-----GSGKSTILRLLLRFFDY----SG 406 (591)
T ss_pred CCcccCCCcEEEEeeEEEe--CCCCceecceeEEe-----cCCCEEEEECCC-----CCCHHHHHHHHHHHhcc----CC
Confidence 4677889999999999997 554 4999999999 688899999887 89999999999999874 89
Q ss_pred EEEECCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------Ccc
Q psy2519 88 DIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNS 156 (622)
Q Consensus 88 ~I~~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~ 156 (622)
+|++||+++.. .+|+.|||||||..||.. ||.+|+.++..- .+.+ +|-++.++.|+ ++.
T Consensus 407 ~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~s-----as~e----eV~e~~k~a~~hd~i~~l~~G 476 (591)
T KOG0057|consen 407 SILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPS-----ASDE----EVVEACKRAGLHDVISRLPDG 476 (591)
T ss_pred cEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCC-----cCHH----HHHHHHHHcCcHHHHHhcccc
Confidence 99999999875 489999999999888866 999999997422 1222 23333444444 344
Q ss_pred cCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 157 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 157 ~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
.++.+|+ +.+-|||||||||+||||+++||+|+++|||||.||..+-.++++.+.+.. .|+|+|++.|+. ..
T Consensus 477 Y~T~VGe----rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~l 548 (591)
T KOG0057|consen 477 YQTLVGE----RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DL 548 (591)
T ss_pred chhhHhh----cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hh
Confidence 5666776 334599999999999999999999999999999999999999999999954 589999999996 56
Q ss_pred HhhccceeeecCCceEEecChHHHHH
Q psy2519 237 IDMFDKIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 237 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 262 (622)
.+-||+|+++++|++...|+.+|++.
T Consensus 549 l~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 549 LKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCEEEEEECCeeEEeccHHHHhh
Confidence 68899999999999999999998874
No 252
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.7e-38 Score=322.46 Aligned_cols=217 Identities=19% Similarity=0.279 Sum_probs=179.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++|..+..++|+++|+++ ++|+.++++|+| |||||||+++|+|+.++ +|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I-----~~Ge~~~IvG~n-----GsGKSTLl~~L~gl~~~----~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSI-----SPGQRVGLLGRT-----GSGKSTLLSAFLRLLNT----EGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhhhcCC----CcEEEECCEEh
Confidence 36789999998656677999999999 678888888887 89999999999999863 79999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCC---cCCCCc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS---SSITQK 169 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~---~~~~~~ 169 (622)
.. .+|+.++||+|++.+++. ||+||+..... ... +++.+.++.+||.+..++.++. ......
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------CCH----HHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 53 467899999999999875 99999964211 111 2456778889987655554321 000113
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
+.||||||||++|||||+.+|++|+|||||++||+.+...+.+.|+++. .++|||++||++ +.+. .||||++|++|
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~-~~i~-~~dri~vl~~G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRI-EAML-ECQRFLVIEEN 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCH-HHHH-hCCEEEEecCC
Confidence 4599999999999999999999999999999999999999999999874 489999999997 5665 59999999999
Q ss_pred ceEEecChHHHHH
Q psy2519 250 RTAFIGSKDAALA 262 (622)
Q Consensus 250 ~iv~~G~~~~~~~ 262 (622)
++++.|+++++..
T Consensus 213 ~i~~~g~~~~l~~ 225 (275)
T cd03289 213 KVRQYDSIQKLLN 225 (275)
T ss_pred eEeecCCHHHHhh
Confidence 9999999998763
No 253
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-37 Score=323.05 Aligned_cols=221 Identities=21% Similarity=0.298 Sum_probs=180.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++|+++|+++ ++|+.+.|+|+| ||||||||++|+|+.+|. ...+|+|.++|+
T Consensus 45 ~l~i~nl~~~~--~~~~iL~~is~~i-----~~Ge~~~IvG~n-----GsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~ 112 (305)
T PRK14264 45 KLSVEDLDVYY--GDDHALKGVSMDI-----PEKSVTALIGPS-----GCGKSTFLRCLNRMNDRIKAARIDGSVELDGQ 112 (305)
T ss_pred eEEEEEEEEEe--CCeeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 57889999986 5678999999999 678888888887 899999999999998620 014899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc---------cc-cHHHHHHHHHHHHHHhCCCc---
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR---------RV-KAYQRIALINSLLIELGLMN--- 155 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~---------~~-~~~~~~~~v~~~l~~lgL~~--- 155 (622)
++.. ..++.++||+|++.+++. ||+||+.+........ .. .....+++++++++.+++.+
T Consensus 113 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 191 (305)
T PRK14264 113 DIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN 191 (305)
T ss_pred EcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh
Confidence 8742 246789999999888874 9999999875432100 01 11223456888999998853
Q ss_pred -ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH
Q psy2519 156 -SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234 (622)
Q Consensus 156 -~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~ 234 (622)
..++.+.+ ||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +
T Consensus 192 ~~~~~~~~~--------LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~ 260 (305)
T PRK14264 192 DRLDDNALG--------LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNM-Q 260 (305)
T ss_pred HHhcCcccc--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-H
Confidence 34555444 999999999999999999999999999999999999999999999976 38999999996 6
Q ss_pred HHHhhccce-eeecCCceEEecChHHHH
Q psy2519 235 ELIDMFDKI-ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 235 ~i~~~~D~v-~~L~~G~iv~~G~~~~~~ 261 (622)
.+.++||++ ++|++|+++..|+++++.
T Consensus 261 ~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 261 QAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 788899997 578999999999988664
No 254
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-37 Score=317.25 Aligned_cols=219 Identities=21% Similarity=0.290 Sum_probs=180.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|.. ..+|+|.++|+
T Consensus 16 ~l~~~~l~~~~--~~~~vl~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~ 83 (265)
T PRK14252 16 KSEVNKLNFYY--GGYQALKNINMMV-----HEKQVTALIGPS-----GCGKSTFLRCFNRMHDLYPGNHYEGEIILHPD 83 (265)
T ss_pred eEEEEEEEEEE--CCeeeeeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcccCCCCCCCcccEEEEcCc
Confidence 47889999987 5567999999999 678888888877 8999999999999987521 14899999998
Q ss_pred ecC---c-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccC
Q psy2519 95 PVE---G-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIG 162 (622)
Q Consensus 95 ~~~---~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~ 162 (622)
++. . .+++.+||++|++.+++. ||+||+.+....... ......+++++++++.+++. +..++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 160 (265)
T PRK14252 84 NVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLGDLAF 160 (265)
T ss_pred cccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHhCCcc
Confidence 763 1 356789999999988886 999999887543211 01122245677888888874 33455555
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++|||
T Consensus 161 ~--------LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~-~~~~~~~d~ 229 (265)
T PRK14252 161 N--------LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNM-QQAARVSDY 229 (265)
T ss_pred c--------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCH-HHHHHhCCE
Confidence 5 999999999999999999999999999999999999999999999974 58999999996 688889999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
+++|++|+++..|+.+++.
T Consensus 230 i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 230 TAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
No 255
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.4e-37 Score=315.08 Aligned_cols=203 Identities=27% Similarity=0.318 Sum_probs=174.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~--~~~~vl~~vs~~i-----~~Ge~~~I~G~N-----GsGKSTLl~~i~Gl~~p---~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSF--GQRRVLSDVSLEL-----KPGKILTLLGPN-----GAGKSTLVRVVLGLVAP---DEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEE--CCceEEEeEEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCc--
Confidence 46789999987 5667999999999 678888888887 89999999999999998 5899999872
Q ss_pred CccccccEEEEecCCCCCCCC--CHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EGKFRSACGFMYQHDLFSPSL--TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~l--TV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
+.++|++|++.+++.+ |+.+++.+.. ... .+++.++++.+||.+..++.+.+ |||
T Consensus 67 -----~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~~--------LSg 123 (251)
T PRK09544 67 -----LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQK--------LSG 123 (251)
T ss_pred -----cCEEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChhh--------CCH
Confidence 4699999998877764 7888765421 111 23467899999999888888766 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +++.+.||++++|++ +++..
T Consensus 124 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~ 201 (251)
T PRK09544 124 GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCS 201 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEee
Confidence 9999999999999999999999999999999999999999999874489999999996 688899999999964 79999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 202 g~~~~~~ 208 (251)
T PRK09544 202 GTPEVVS 208 (251)
T ss_pred CCHHHHh
Confidence 9988763
No 256
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=4.7e-38 Score=315.42 Aligned_cols=212 Identities=22% Similarity=0.292 Sum_probs=172.0
Q ss_pred ecCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 14 FKNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+.++++++|++++|..+ +.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~ 74 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTL-----HPGEVTALVGPS-----GSGKSTVVALLENFYQP---QGGQVLLD 74 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCcEEEEC
Confidence 45678899999998432 246999999999 678888888777 89999999999999998 58999999
Q ss_pred CEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh--CCCcccCCccCCcCC
Q psy2519 93 GKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSI 166 (622)
Q Consensus 93 G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~~~~ 166 (622)
|+++.. ..++.++|++|++.+++ .||+||+.++..........+......++++++.+ |+.+..++.+.+
T Consensus 75 g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~--- 150 (226)
T cd03248 75 GKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQ--- 150 (226)
T ss_pred CCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc---
Confidence 998753 35678999999988876 59999998754321100001111122356788888 787777777665
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|++||++ +++. .||++++|
T Consensus 151 -----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~-~~d~i~~l 221 (226)
T cd03248 151 -----LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRL-STVE-RADQILVL 221 (226)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCH-HHHH-hCCEEEEe
Confidence 999999999999999999999999999999999999999999999864 58999999997 5665 59999999
Q ss_pred cCCce
Q psy2519 247 ADSRT 251 (622)
Q Consensus 247 ~~G~i 251 (622)
++|++
T Consensus 222 ~~g~i 226 (226)
T cd03248 222 DGGRI 226 (226)
T ss_pred cCCcC
Confidence 99974
No 257
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=347.85 Aligned_cols=214 Identities=21% Similarity=0.294 Sum_probs=181.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|+++.| + .+++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 265 ~l~~~~l~~~~--~--~~l~~isl~i-----~~Ge~~~l~G~N-----GsGKSTLlk~i~Gl~~p---~~G~I~~~g~~~ 327 (510)
T PRK09700 265 VFEVRNVTSRD--R--KKVRDISFSV-----CRGEILGFAGLV-----GSGRTELMNCLFGVDKR---AGGEIRLNGKDI 327 (510)
T ss_pred EEEEeCccccC--C--CcccceeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCcC---CCCeEEECCEEC
Confidence 58899999864 3 3899999999 677788888887 89999999999999998 589999999987
Q ss_pred Cc-----cccccEEEEecC---CCCCCCCCHHHHHHHHHHcC---CCc--c-ccHHHHHHHHHHHHHHhCCC-cccCCcc
Q psy2519 97 EG-----KFRSACGFMYQH---DLFSPSLTVYEHLYFMALLK---LDR--R-VKAYQRIALINSLLIELGLM-NSQHTRI 161 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~---~~l~~~lTV~E~l~f~~~l~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~v 161 (622)
.. ..++.+|||+|+ ..+++.+||.||+.+....+ ... . ....+.+++++++++.+||. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 53 245689999998 46889999999998753221 000 0 01222345678999999997 7788887
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
++ |||||||||+|||+|+.+|++|||||||+|||+.++..+.++|+++++ +|.|||++|||+ +++.++||
T Consensus 408 ~~--------LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~-~~~~~~~d 477 (510)
T PRK09700 408 TE--------LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSEL-PEIITVCD 477 (510)
T ss_pred cc--------CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCC
Confidence 77 999999999999999999999999999999999999999999999987 699999999996 68889999
Q ss_pred ceeeecCCceEEecCh
Q psy2519 242 KIILLADSRTAFIGSK 257 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~ 257 (622)
|+++|++|+++..++.
T Consensus 478 ~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 478 RIAVFCEGRLTQILTN 493 (510)
T ss_pred EEEEEECCEEEEEecC
Confidence 9999999999988765
No 258
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-37 Score=351.18 Aligned_cols=219 Identities=27% Similarity=0.406 Sum_probs=178.3
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+|+|+.++.++++++|+++ ++|+.+.++|++ |||||||+++|+|+.+| .+|+|.+||.
T Consensus 314 ~~~i~~~~v~~~y~~~~~~~l~~~~~~i-----~~G~~~~ivG~s-----GsGKSTL~~ll~g~~~~---~~G~i~~~g~ 380 (544)
T TIGR01842 314 EGHLSVENVTIVPPGGKKPTLRGISFRL-----QAGEALAIIGPS-----GSGKSTLARLIVGIWPP---TSGSVRLDGA 380 (544)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCE
Confidence 3468999999998655568999999999 688888888776 89999999999999998 5899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHH-----HHHHHHHHHHhCCCcccCCccCCcC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR-----IALINSLLIELGLMNSQHTRIGSSS 165 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~v~~~~ 165 (622)
++.. .+|+.++||+|++.+++. |++||+.++... .++++. ....++.++.+ ++..|+.+++
T Consensus 381 ~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-- 450 (544)
T TIGR01842 381 DLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGEN-----ADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-- 450 (544)
T ss_pred ehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCCC-----CCHHHHHHHHHHhChHHHHHhC--ccccccccCC--
Confidence 9864 478899999999998876 999999854311 122211 11233445444 2234555544
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
..+.||||||||++|||||+.+|++|+|||||+|||+.++.++.+.|+++.+ .|+|+|++||++ + ..+.||++++
T Consensus 451 --~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~-~-~~~~~d~i~~ 525 (544)
T TIGR01842 451 --GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRP-S-LLGCVDKILV 525 (544)
T ss_pred --CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCH-H-HHHhCCEEEE
Confidence 1344999999999999999999999999999999999999999999999975 589999999997 3 4578999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+.+++.
T Consensus 526 l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 526 LQDGRIARFGERDEVL 541 (544)
T ss_pred EECCEEEeeCCHHHHh
Confidence 9999999999988764
No 259
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6.6e-38 Score=364.06 Aligned_cols=216 Identities=20% Similarity=0.266 Sum_probs=180.0
Q ss_pred ecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 14 FKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
..+.++++||+|+|+.++.++|+++|+++ ++|+++.++|++ |||||||+|+|+|+.+| .+|+|.+||
T Consensus 474 ~~~~I~~~~vsf~y~~~~~~vL~~isl~i-----~~Ge~vaIvG~s-----GsGKSTLlklL~gl~~p---~~G~I~idg 540 (710)
T TIGR03796 474 LSGYVELRNITFGYSPLEPPLIENFSLTL-----QPGQRVALVGGS-----GSGKSTIAKLVAGLYQP---WSGEILFDG 540 (710)
T ss_pred CCCeEEEEEEEEecCCCCCCcccceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECC
Confidence 34568999999998655578999999999 688888888776 89999999999999999 589999999
Q ss_pred EecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccC
Q psy2519 94 KPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIG 162 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~ 162 (622)
.++.. .+|+.+|||+|++.+++. |++|||.++.. ..+. +++.++++..++. +..|+.++
T Consensus 541 ~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-----~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~ 610 (710)
T TIGR03796 541 IPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-----TIPD----ADLVRACKDAAIHDVITSRPGGYDAELA 610 (710)
T ss_pred EeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCC-----CCCH----HHHHHHHHHhCCHHHHHhCcCcccceec
Confidence 99865 479999999999998865 99999987521 1122 2244555555553 34566666
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ...+||||||||++|||||+.+|++|+||||||+||+.+..++.+.|++ .++|+|++||++ ...+.|||
T Consensus 611 e----~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~ 680 (710)
T TIGR03796 611 E----GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDE 680 (710)
T ss_pred c----CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCE
Confidence 5 2356999999999999999999999999999999999999999999975 479999999997 34467999
Q ss_pred eeeecCCceEEecChHHHHH
Q psy2519 243 IILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~~ 262 (622)
|++|++|+++..|+.+++.+
T Consensus 681 Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 681 IIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999998763
No 260
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-37 Score=311.23 Aligned_cols=203 Identities=22% Similarity=0.225 Sum_probs=166.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|..++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 69 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSI-----KPGEKVGIVGRT-----GSGKSSLLLALFRLVEL---SSGSILIDGVDIS 69 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHHcCCCC---CCCEEEECCEEhH
Confidence 5789999998544457999999999 677788888776 89999999999999998 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc-----------CCccC
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-----------HTRIG 162 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~ 162 (622)
. .+++.++|++|++.+++ .||+||+.+... .. .+++.+.++.+++.+.. +..+.
T Consensus 70 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~ 138 (221)
T cd03244 70 KIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGE 138 (221)
T ss_pred hCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence 3 35788999999988776 599999965321 11 12344556666654433 23333
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ +++. .||+
T Consensus 139 ~--------LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~-~~d~ 206 (221)
T cd03244 139 N--------LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRL-DTII-DSDR 206 (221)
T ss_pred c--------CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCH-HHHh-hCCE
Confidence 3 999999999999999999999999999999999999999999999864 68999999996 5665 4999
Q ss_pred eeeecCCceEEecC
Q psy2519 243 IILLADSRTAFIGS 256 (622)
Q Consensus 243 v~~L~~G~iv~~G~ 256 (622)
+++|++|++++.|+
T Consensus 207 i~~l~~g~~~~~~~ 220 (221)
T cd03244 207 ILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEECCeEEecCC
Confidence 99999999998876
No 261
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.3e-37 Score=345.59 Aligned_cols=220 Identities=20% Similarity=0.314 Sum_probs=184.2
Q ss_pred CcccCCccccccc-cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIV-GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~-g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.++++|+++.|.. |+.++++++|+++ .+|+.+.++|+| |||||||||+|+|+.+|. .+|+|.++|++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i-----~~Ge~~~l~G~N-----GsGKSTLl~~l~G~~~p~--~~G~i~~~g~~ 324 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSL-----RRGEILGVAGLV-----GAGRTELVQALFGAYPGK--FEGNVFINGKP 324 (500)
T ss_pred eEEEeCCcccccccccccccccceeEE-----eCCcEEEEeCCC-----CCCHHHHHHHHhCCCCCC--CCeEEEECCEE
Confidence 5789999998632 3457999999999 677888888887 899999999999999851 38999999998
Q ss_pred cCc-----cccccEEEEecCC---CCCCCCCHHHHHHHHHH--cCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCc
Q psy2519 96 VEG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMAL--LKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSS 164 (622)
Q Consensus 96 ~~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~--l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~ 164 (622)
+.. ..++++|||+|+. .+++.+||+||+.++.. ..........+.+++++++++.++|.+ ..++++++
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 403 (500)
T TIGR02633 325 VDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGR- 403 (500)
T ss_pred CCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcccc-
Confidence 752 2467899999995 58999999999988642 110001122334567889999999974 57888777
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++|||+ +++.++||+++
T Consensus 404 -------LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~v~ 474 (500)
T TIGR02633 404 -------LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSEL-AEVLGLSDRVL 474 (500)
T ss_pred -------CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 68899999999
Q ss_pred eecCCceEEecChH
Q psy2519 245 LLADSRTAFIGSKD 258 (622)
Q Consensus 245 ~L~~G~iv~~G~~~ 258 (622)
+|++|+++..++.+
T Consensus 475 ~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 475 VIGEGKLKGDFVNH 488 (500)
T ss_pred EEECCEEEEEEccc
Confidence 99999999877654
No 262
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.3e-37 Score=346.75 Aligned_cols=209 Identities=19% Similarity=0.234 Sum_probs=179.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~liG~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~~~~~ 67 (490)
T PRK10938 3 SLQISQGTFRL--SDTKTLQLPSLTL-----NAGDSWAFVGAN-----GSGKSALARALAGELPL---LSGERQSQFSHI 67 (490)
T ss_pred eEEEEeEEEEc--CCeeecccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCC---CCceEEECCccc
Confidence 47899999997 5667999999999 677788888777 89999999999999998 589999999876
Q ss_pred Cc----cccccEEEEecCCCC--C------CCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 97 EG----KFRSACGFMYQHDLF--S------PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l--~------~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
.. ..++.+||++|++.+ + ..+||+|++.+. .+..++++++++.+||.+..++.+++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~- 135 (490)
T PRK10938 68 TRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFKY- 135 (490)
T ss_pred ccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCccc-
Confidence 42 245679999998542 1 157888887542 11235678999999999888888777
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++ +|.|||++||++ +.+.+.||+++
T Consensus 136 -------LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~-~~~~~~~d~v~ 206 (490)
T PRK10938 136 -------LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRF-DEIPDFVQFAG 206 (490)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999987 599999999996 68889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 207 ~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 207 VLADCTLAETGEREEIL 223 (490)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988753
No 263
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.2e-37 Score=302.87 Aligned_cols=188 Identities=24% Similarity=0.291 Sum_probs=159.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~~~~G~I~~~G~~ 95 (622)
++++||+++| ++.++++++|+++ ++|+.++++|+| |||||||+++|+|+. +| .+|+|.++|++
T Consensus 1 l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~i~G~n-----GsGKStLl~~l~G~~~~~p---~~G~i~~~g~~ 65 (200)
T cd03217 1 LEIKDLHVSV--GGKEILKGVNLTI-----KKGEVHALMGPN-----GSGKSTLAKTIMGHPKYEV---TEGEILFKGED 65 (200)
T ss_pred CeEEEEEEEe--CCEEeeeccceEE-----CCCcEEEEECCC-----CCCHHHHHHHHhCCCcCCC---CccEEEECCEE
Confidence 3578999987 4567999999999 678888888777 899999999999994 56 58999999998
Q ss_pred cCc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 96 VEG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
+.. . .++.++|++|++.+++.+|+++++ +....+
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~~~~------- 104 (200)
T cd03217 66 ITDLPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYVNEG------- 104 (200)
T ss_pred CCcCCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhcccc-------
Confidence 864 1 245699999999999988988876 001123
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh-hccceeeecCC
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADS 249 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~-~~D~v~~L~~G 249 (622)
||||||||++|||+|+.+|++++|||||+|||+.++.++.+.|+++++ .|+|||++||++ +.+.+ .+|++++|++|
T Consensus 105 -LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~-~~~~~~~~d~i~~l~~G 181 (200)
T cd03217 105 -FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQ-RLLDYIKPDRVHVLYDG 181 (200)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999986 689999999997 56766 79999999999
Q ss_pred ceEEecChHHHHHHHH
Q psy2519 250 RTAFIGSKDAALAFLE 265 (622)
Q Consensus 250 ~iv~~G~~~~~~~~~~ 265 (622)
++++.|+.+ +.+.+.
T Consensus 182 ~i~~~~~~~-~~~~~~ 196 (200)
T cd03217 182 RIVKSGDKE-LALEIE 196 (200)
T ss_pred EEEEEccHH-HHhhhc
Confidence 999999544 554443
No 264
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4.2e-37 Score=302.39 Aligned_cols=194 Identities=23% Similarity=0.296 Sum_probs=166.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (198)
T TIGR01189 1 LAARNLACSR--GERMLFEGLSFTL-----NAGEALQVTGPN-----GIGKTTLLRILAGLLRP---DSGEVRWNGTALA 65 (198)
T ss_pred CEEEEEEEEE--CCEEEEeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CccEEEECCEEcc
Confidence 3678999986 6678999999999 678888888887 89999999999999988 5899999999875
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.++|++|++.+++.+||.||+.+...... . + .++++++++.++|.+..++.+++ |||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 130 (198)
T TIGR01189 66 EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPAAQ--------LSA 130 (198)
T ss_pred cchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCChhh--------cCH
Confidence 3 356789999999889999999999988754332 1 1 23567899999999888888776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|.|+|++||++. .+ .+++++.
T Consensus 131 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~-~~--~~~~~~~ 197 (198)
T TIGR01189 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDL-GL--VEARELR 197 (198)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccc-cc--cceEEee
Confidence 999999999999999999999999999999999999999999976 6899999999973 33 4577654
No 265
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.4e-37 Score=352.49 Aligned_cols=215 Identities=27% Similarity=0.395 Sum_probs=182.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+|+|+.++.++|+++|+++ ++|+.+.++|++ |||||||+++|+|+.+| .+|+|.+||++
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i-----~~G~~~aivG~s-----GsGKSTL~~ll~g~~~p---~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQI-----KAGEKVALLGRT-----GCGKSTLLQLLTRAWDP---QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCEE
Confidence 458899999998544467999999999 678888888775 89999999999999999 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc------cCCccCCcC
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS------QHTRIGSSS 165 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~------~~~~v~~~~ 165 (622)
+.+ .+|+.+|||+|++.+++. |++||+.++.. ..+ .+.+.++++.+++.+. .|+.+|+
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-- 471 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-- 471 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHcCccccCchhcC--
Confidence 865 478999999999988875 99999988631 112 2346677888887653 4566665
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
..+.||||||||++|||||+.+|++|+|||||++||+.+..++.+.|+++. +++|+|+++|++ +.+ +.||+|++
T Consensus 472 --~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~-~~~-~~~d~i~~ 545 (574)
T PRK11160 472 --GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRL-TGL-EQFDRICV 545 (574)
T ss_pred --CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCh-hHH-HhCCEEEE
Confidence 234599999999999999999999999999999999999999999999986 479999999997 344 56999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+.+++.
T Consensus 546 l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 546 MDNGQIIEQGTHQELL 561 (574)
T ss_pred EeCCeEEEeCCHHHHH
Confidence 9999999999998775
No 266
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.6e-37 Score=316.07 Aligned_cols=225 Identities=18% Similarity=0.193 Sum_probs=175.2
Q ss_pred eEEeecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 10 TVILFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
...-++..++++|++++|...+.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|
T Consensus 12 ~~~~~~~~i~~~~l~~~~~~~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i 78 (257)
T cd03288 12 GLVGLGGEIKIHDLCVRYENNLKPVLKHVKAYI-----KPGQKVGICGRT-----GSGKSSLSLAFFRMVDI---FDGKI 78 (257)
T ss_pred ccccCCceEEEEEEEEEeCCCCCcceeEEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcccCC---CCCeE
Confidence 345567889999999997432357999999999 678888888777 89999999999999988 58999
Q ss_pred EECCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh--CCCcccCCccCC
Q psy2519 90 RVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGS 163 (622)
Q Consensus 90 ~~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~ 163 (622)
.++|+++.. .+++.++|++|++.+++ .|++||+...... .............+++.++.+ |++...+....+
T Consensus 79 ~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 156 (257)
T cd03288 79 VIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECKC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGEN 156 (257)
T ss_pred EECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCCC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCc
Confidence 999998754 35788999999998876 4999998542110 000000000011233444444 444444443333
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+++++ ++.|||++||++ +++. .|||+
T Consensus 157 --------LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~-~~~~-~~dri 224 (257)
T cd03288 157 --------FSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRV-STIL-DADLV 224 (257)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecCh-HHHH-hCCEE
Confidence 99999999999999999999999999999999999999999999974 489999999997 4665 49999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+++++.
T Consensus 225 ~~l~~G~i~~~g~~~~~~ 242 (257)
T cd03288 225 LVLSRGILVECDTPENLL 242 (257)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
No 267
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2e-37 Score=353.08 Aligned_cols=213 Identities=21% Similarity=0.299 Sum_probs=181.1
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|+ ++.++++++|+++ ++|+.++++|++ |||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~-~~~~il~~i~l~i-----~~Ge~iaIvG~S-----GsGKSTLl~lL~gl~~p---~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYR-DDNLVLQNINLSV-----PSRGFVALVGHT-----GSGKSTLASLLMGYYPL---TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeC-CCCceeeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccCC---CCceEEECCEE
Confidence 4588999999985 4467999999999 788888888775 89999999999999999 48999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~~ 164 (622)
+++ .+|++|+||+|++.+|+. |++|||.++. . .++ +++.++++.+|+. +..|+.+++
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~--~----~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e- 472 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR--D----ISE----EQVWQALETVQLAELARSLPDGLYTPLGE- 472 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC--C----CCH----HHHHHHHHHcCcHHHHHhccccccccccC-
Confidence 865 478999999999999987 9999999863 1 121 2355666666654 345666665
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|++|+|||||++||+.+..++.+.|+++.+ ++|+|++||++ ...+.||+|+
T Consensus 473 ---~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii 545 (592)
T PRK10790 473 ---QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTIL 545 (592)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEE
Confidence 2345999999999999999999999999999999999999999999999864 69999999997 4456799999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+.+++.
T Consensus 546 ~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 546 VLHRGQAVEQGTHQQLL 562 (592)
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999999875
No 268
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.5e-37 Score=305.09 Aligned_cols=198 Identities=23% Similarity=0.348 Sum_probs=169.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++..+++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 66 (207)
T PRK13539 2 MLEGEDLACVR--GGRVLFSGLSFTL-----AAGEALVLTGPN-----GSGKTTLLRLIAGLLPP---AAGTIKLDGGDI 66 (207)
T ss_pred EEEEEeEEEEE--CCeEEEeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEeC
Confidence 36789999986 5667999999999 677888888777 89999999999999988 589999999886
Q ss_pred Cc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 97 EG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 97 ~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
.. ..++.++|++|++.+++.+||.||+.+...... .. .++++++++.+||.+..++.+++ ||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 131 (207)
T PRK13539 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPFGY--------LSAG 131 (207)
T ss_pred cchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCChhh--------cCHH
Confidence 43 257789999999888999999999988654431 11 13478899999998777777666 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||++|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++||++ .++.+ |+++.+..
T Consensus 132 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 132 QKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 99999999999999999999999999999999999999999987 699999999996 56654 88877743
No 269
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-37 Score=295.20 Aligned_cols=169 Identities=32% Similarity=0.468 Sum_probs=152.6
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 2 ~~~~l~~~~--~~~~~l~~~~~~i-----~~Ge~~~i~G~n-----GsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRY--GKKTALDDISLTV-----EKGEIYGLLGPN-----GAGKTTLIKIILGLLKP---DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEE--CCeeeeeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCEEccc
Confidence 578999986 4557999999999 677788888777 89999999999999988 48999999998753
Q ss_pred ---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 99 ---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 99 ---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
..++.++|++|++.+++.+|+.||+. ||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-----------------------------------------------LS~G 99 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK-----------------------------------------------LSGG 99 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh-----------------------------------------------cCHH
Confidence 45678999999999999999999973 7999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|.|+|++||++ +++.+.+|++++|++|++
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999987 489999999996 678889999999999974
No 270
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.4e-37 Score=302.10 Aligned_cols=193 Identities=19% Similarity=0.229 Sum_probs=165.8
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~--~~~~il~~~s~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDY--HDQPLLQQISFHL-----PAGGLLHLKGSN-----GAGKTTLLKLIAGLLNP---EKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEe--CCeeEEeeeeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeeEEECCCccc
Confidence 5789999986 5677999999999 678888888777 89999999999999998 5899999999875
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. .+++.+||++|+..+++.+||+||+.+..... . . ..+++++++.+++.+..++.+++ |||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~-----~-~--~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 130 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS-----P-G--AVGITELCRLFSLEHLIDYPCGL--------LSS 130 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC-----c-c--hHHHHHHHHHcCCchhhhCChhh--------cCH
Confidence 3 35778999999988989999999999864321 1 1 23578999999998777777666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||++||++ +..+.+|...
T Consensus 131 G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~--~~~~~~d~~~ 197 (200)
T PRK13540 131 GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQD--LPLNKADYEE 197 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCc--hhccccchhh
Confidence 999999999999999999999999999999999999999999976 699999999996 3445677544
No 271
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=9.4e-37 Score=305.56 Aligned_cols=205 Identities=21% Similarity=0.268 Sum_probs=169.6
Q ss_pred CcccCCccccccc---c--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 17 NEEVPNVDFSEIV---G--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 17 ~~~~~~~~~~~~~---g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
+++++||++.|.. + +.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.+
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~ 67 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTV-----NAGECVALSGPS-----GAGKSTLLKSLYANYLP---DSGRILV 67 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCeEEE
Confidence 3678999999732 1 257999999999 678888888777 89999999999999998 4899999
Q ss_pred C--CE--ecCc----c----ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cC
Q psy2519 92 N--GK--PVEG----K----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QH 158 (622)
Q Consensus 92 ~--G~--~~~~----~----~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~ 158 (622)
+ |+ ++.. . .++.+||++|++.+++.+||+||+.+...... ....+..+++.++++.+||.+. .+
T Consensus 68 ~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (224)
T TIGR02324 68 RHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG---VPREAARARARELLARLNIPERLWH 144 (224)
T ss_pred ecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhh
Confidence 8 43 4321 1 24579999999999999999999988654321 2223345577899999999763 46
Q ss_pred CccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh
Q psy2519 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238 (622)
Q Consensus 159 ~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~ 238 (622)
+.+.+ ||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||++ +.+.+
T Consensus 145 ~~~~~--------LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~-~~~~~ 214 (224)
T TIGR02324 145 LPPAT--------FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDE-EVREL 214 (224)
T ss_pred CCccc--------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHH
Confidence 66655 999999999999999999999999999999999999999999999986 699999999995 67778
Q ss_pred hccceeeec
Q psy2519 239 MFDKIILLA 247 (622)
Q Consensus 239 ~~D~v~~L~ 247 (622)
+||+++.+.
T Consensus 215 ~~d~i~~~~ 223 (224)
T TIGR02324 215 VADRVMDVT 223 (224)
T ss_pred hcceeEecC
Confidence 999998763
No 272
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-36 Score=309.52 Aligned_cols=198 Identities=19% Similarity=0.175 Sum_probs=171.3
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEec
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQ 109 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q 109 (622)
+..++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+ +++++|
T Consensus 35 ~~~~il~~is~~i-----~~Ge~~~liG~N-----GsGKSTLlk~L~Gl~~p---~~G~I~~~g~---------~~~~~~ 92 (264)
T PRK13546 35 KTFFALDDISLKA-----YEGDVIGLVGIN-----GSGKSTLSNIIGGSLSP---TVGKVDRNGE---------VSVIAI 92 (264)
T ss_pred CceEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCcCC---CceEEEECCE---------EeEEec
Confidence 4467899999999 678888888887 79999999999999998 4899999985 456778
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhC
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~ 189 (622)
+..+.+.+|+.||+.+...... ...++..+.++++++.++|.+..++.+++ ||||||||++||++|+.+
T Consensus 93 ~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~Gq~qrv~Laral~~~ 161 (264)
T PRK13546 93 SAGLSGQLTGIENIEFKMLCMG---FKRKEIKAMTPKIIEFSELGEFIYQPVKK--------YSSGMRAKLGFSINITVN 161 (264)
T ss_pred ccCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCccc--------CCHHHHHHHHHHHHHhhC
Confidence 7778888999999987654332 12334455677889999998888887766 999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHH
Q psy2519 190 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 190 P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 262 (622)
|++|||||||+|||+.++..+.+.|.++++ .|.|||++||++ .++.+.||++++|++|+++..|+++++.+
T Consensus 162 p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 162 PDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999976 699999999996 67888999999999999999999987754
No 273
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2e-37 Score=359.07 Aligned_cols=218 Identities=25% Similarity=0.361 Sum_probs=182.2
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+|+|+.++.++|+++|+++ ++|+.++++|++ |||||||+|+|+|+.+| .+|+|.+||.
T Consensus 461 ~~~I~~~~vsf~Y~~~~~~vL~~i~l~i-----~~G~~iaIvG~s-----GsGKSTLlklL~gl~~p---~~G~I~idg~ 527 (694)
T TIGR03375 461 QGEIEFRNVSFAYPGQETPALDNVSLTI-----RPGEKVAIIGRI-----GSGKSTLLKLLLGLYQP---TEGSVLLDGV 527 (694)
T ss_pred cceEEEEEEEEEeCCCCccceeeeeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCE
Confidence 4568999999998545567999999999 688888888776 89999999999999999 5899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~ 163 (622)
++.. .+|+.+|||+|++.+++. |++|||.++.. ..+++ ++.++++..++ ++..|+.+++
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e 597 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGE 597 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC-----CCCHH----HHHHHHHHcChHHHHHhCcccccceecC
Confidence 9865 479999999999998876 99999988631 11222 23444444444 3455777766
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+.+|++++||||||+||+.+..++.+.|+++.+ ++|+|++||++ ...+.||+|
T Consensus 598 ----~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl--~~~~~~D~i 669 (694)
T TIGR03375 598 ----RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT--SLLDLVDRI 669 (694)
T ss_pred ----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEE
Confidence 2345999999999999999999999999999999999999999999999864 79999999997 345789999
Q ss_pred eeecCCceEEecChHHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALAF 263 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~~ 263 (622)
++|++|++++.|+.+++.+.
T Consensus 670 ivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 670 IVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999987643
No 274
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.9e-37 Score=351.38 Aligned_cols=222 Identities=27% Similarity=0.377 Sum_probs=181.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|+ ++.++++++|+++ ++|+++.++|++ |||||||+++|.|+..| .+|+|.+||+|
T Consensus 327 ~~I~f~~vsf~y~-~~~~vl~~is~~i-----~~Ge~vaiVG~s-----GsGKSTl~~LL~r~~~~---~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYP-GKKPVLKDISFSI-----EPGEKVAIVGPS-----GSGKSTLIKLLLRLYDP---TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcC-CCCccccCceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCC---CCCeEEECCEe
Confidence 4589999999982 3678999999999 678888888775 89999999999999999 59999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
++. .+|+.+|||+|++.+|. -||+||+.++..-..+..+.+..+...+++.++.+ ++..|+.+|+ ....
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge----~G~~ 465 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGE----RGVN 465 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecC----CCcc
Confidence 976 48999999999999998 69999999974321101111111112233444443 5567888885 2245
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++||||++.+|++|+||||||+||+.+...+.+.++++.+ |+|+++++|.+ +.+. .+|+|++|++|++
T Consensus 466 LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRl-sti~-~aD~IiVl~~G~i 541 (567)
T COG1132 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL-STIK-NADRIIVLDNGRI 541 (567)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccH-hHHH-hCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998874 68999999997 4554 4999999999999
Q ss_pred EEecChHHHHH
Q psy2519 252 AFIGSKDAALA 262 (622)
Q Consensus 252 v~~G~~~~~~~ 262 (622)
++.|+.+++..
T Consensus 542 ~e~G~h~eLl~ 552 (567)
T COG1132 542 VERGTHEELLA 552 (567)
T ss_pred EEecCHHHHHH
Confidence 99999998864
No 275
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-38 Score=333.84 Aligned_cols=215 Identities=28% Similarity=0.370 Sum_probs=185.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+|+-.+.++|+|+|+++ ++|+++.|+|++ |||||||+.+|.|...| .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l-----~~GEkvAIlG~S-----GsGKSTllqLl~~~~~~---~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTL-----AQGEKVAILGRS-----GSGKSTLLQLLAGAWDP---QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCCccchhhccceee-----cCCCeEEEECCC-----CCCHHHHHHHHHhccCC---CCCeeeECCcCh
Confidence 57999999999655668999999999 789999999875 89999999999999999 599999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-------cCCccCCcC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-------QHTRIGSSS 165 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v~~~~ 165 (622)
.. .+|+.+++++|...+|.. |+++||.++..- -++ +.+.++++++||++. .|+.+|+
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~-----AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-- 470 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPD-----ASD----EELWAALQQVGLEKLLESAPDGLNTWLGE-- 470 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCC-----CCH----HHHHHHHHHcCHHHHHHhChhhhhchhcc--
Confidence 64 378899999999888876 999999886421 122 345678888888654 3456666
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
..+.||||||||++|||+|++|.++++|||||.|||+.+.+++++.|.+-++ |+|+|++||+.. .+ +.||||++
T Consensus 471 --~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~-~l-e~~drIiv 544 (573)
T COG4987 471 --GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR-GL-ERMDRIIV 544 (573)
T ss_pred --CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc-cH-hhcCEEEE
Confidence 2467999999999999999999999999999999999999999999999874 899999999973 44 68999999
Q ss_pred ecCCceEEecChHHHHH
Q psy2519 246 LADSRTAFIGSKDAALA 262 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~~ 262 (622)
|++|+++.+|..+++..
T Consensus 545 l~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 545 LDNGKIIEEGTHAELLA 561 (573)
T ss_pred EECCeeeecCCHHhhhc
Confidence 99999999999998763
No 276
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=312.36 Aligned_cols=220 Identities=21% Similarity=0.332 Sum_probs=191.9
Q ss_pred cccCCcccccccc---------ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeE
Q psy2519 18 EEVPNVDFSEIVG---------SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGD 88 (622)
Q Consensus 18 ~~~~~~~~~~~~g---------~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~ 88 (622)
++.++|...|+.. ...+++++|+++ ++|+...++|. ||||||||=.+|.+++++ +|+
T Consensus 277 l~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L-----~~gqTlGlVGE-----SGSGKsTlG~allrL~~s----~G~ 342 (534)
T COG4172 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTL-----RRGQTLGLVGE-----SGSGKSTLGLALLRLIPS----QGE 342 (534)
T ss_pred EEecceEEEEecCCccccccchheEEeccceeEe-----cCCCeEEEEec-----CCCCcchHHHHHHhhcCc----Cce
Confidence 3556666665421 256789999999 56666666655 489999999999999987 699
Q ss_pred EEECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccC
Q psy2519 89 IRVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQH 158 (622)
Q Consensus 89 I~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~ 158 (622)
|.|+|+++.. .+|+++-.||||+ .|.|.+||.|-+.-+...+.+ ..+..++.+++.++|+++||+. .++
T Consensus 343 I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~ 421 (534)
T COG4172 343 IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRN 421 (534)
T ss_pred EEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhh
Confidence 9999999974 2689999999997 599999999999998877654 3577889999999999999964 456
Q ss_pred CccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh
Q psy2519 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238 (622)
Q Consensus 159 ~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~ 238 (622)
++ |++ .|||||||++||||++.+|++++||||||+||-.-+.+|+++|++|.+++|.+-++++||. ..+..
T Consensus 422 RY-----PhE---FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrA 492 (534)
T COG4172 422 RY-----PHE---FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRA 492 (534)
T ss_pred cC-----Ccc---cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHH
Confidence 66 666 9999999999999999999999999999999999999999999999998999999999996 78999
Q ss_pred hccceeeecCCceEEecChHHHH
Q psy2519 239 MFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 239 ~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
+||+|++|++|+||++|+.++++
T Consensus 493 l~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 493 LCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred hhceEEEEeCCEEeeeCCHHHHh
Confidence 99999999999999999999876
No 277
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.6e-37 Score=358.85 Aligned_cols=216 Identities=24% Similarity=0.323 Sum_probs=179.3
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+|+|. ++.++|+++|+++ ++|+.++++|++ |||||||+++|+|+.+| .+|+|++||.
T Consensus 471 ~~~I~~~~vsf~y~-~~~~iL~~isl~i-----~~G~~vaIvG~S-----GsGKSTLlklL~gl~~p---~~G~I~idg~ 536 (708)
T TIGR01193 471 NGDIVINDVSYSYG-YGSNILSDISLTI-----KMNSKTTIVGMS-----GSGKSTLAKLLVGFFQA---RSGEILLNGF 536 (708)
T ss_pred CCcEEEEEEEEEcC-CCCcceeceeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhccCCC---CCcEEEECCE
Confidence 45689999999984 3467999999999 678888888775 89999999999999999 5899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~ 163 (622)
++.+ .+|+.+|||+|++.+++. |++|||.++.... .+.+ ++.++++..++ ++..|+.+++
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~----~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e 607 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKEN----VSQD----EIWAACEIAEIKDDIENMPLGYQTELSE 607 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCCC----CCHH----HHHHHHHHhCCHHHHHhcccccCcEecC
Confidence 9865 478999999999998876 9999999863211 1222 23344444444 3345777765
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+++|++|+|||||++||+.+...+.+.|+++ .|+|+|++||++ ...+.+|+|
T Consensus 608 ----~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i 678 (708)
T TIGR01193 608 ----EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKI 678 (708)
T ss_pred ----CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEE
Confidence 23459999999999999999999999999999999999999999999985 378999999997 345789999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|+++..|+.+++.+
T Consensus 679 ~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 679 IVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998753
No 278
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.9e-37 Score=295.81 Aligned_cols=171 Identities=26% Similarity=0.385 Sum_probs=153.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|++++| +++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEV-----RAGEIVGIAGLV-----GNGQTELAEALFGLRPP---ASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEEe------eecceEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence 57889999985 899999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc-----cccccEEEEecCC---CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 97 EG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
.. ..++.++|++|++ .+++.+|++||+.+...
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------- 104 (182)
T cd03215 65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------- 104 (182)
T ss_pred CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------
Confidence 53 2467899999984 58889999999877421
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ +|.|+|++||++ +++.++||++++|++
T Consensus 105 ---LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~v~~l~~ 179 (182)
T cd03215 105 ---LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSEL-DELLGLCDRILVMYE 179 (182)
T ss_pred ---cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEecC
Confidence 799999999999999999999999999999999999999999999986 589999999996 688899999999999
Q ss_pred Cce
Q psy2519 249 SRT 251 (622)
Q Consensus 249 G~i 251 (622)
|++
T Consensus 180 G~i 182 (182)
T cd03215 180 GRI 182 (182)
T ss_pred CcC
Confidence 975
No 279
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8.3e-37 Score=341.08 Aligned_cols=214 Identities=17% Similarity=0.277 Sum_probs=180.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||++ .+++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i-----~~Ge~~~liG~N-----GsGKSTLl~~l~G~~~p---~~G~I~~~g~~i 316 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTL-----RKGEILGVSGLM-----GAGRTELMKVLYGALPR---TSGYVTLDGHEV 316 (501)
T ss_pred EEEEeCccc-------CCcccceEEE-----cCCcEEEEecCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 356777775 2589999999 677788888887 89999999999999998 489999999987
Q ss_pred Cc-----cccccEEEEecCC---CCCCCCCHHHHHHHHHHcCCC---ccccHHHHHHHHHHHHHHhCCC-cccCCccCCc
Q psy2519 97 EG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMALLKLD---RRVKAYQRIALINSLLIELGLM-NSQHTRIGSS 164 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~l~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~ 164 (622)
.. ..++.+|||+|++ .+++.+||.||+.+....... ......+.+++++++++.+||. +..++.+++
T Consensus 317 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 395 (501)
T PRK10762 317 VTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGL- 395 (501)
T ss_pred CCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhh-
Confidence 53 2456799999995 588999999999875321100 0012233456788999999995 678888777
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++|||+ +++.++||+++
T Consensus 396 -------LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~-~~~~~~~d~v~ 466 (501)
T PRK10762 396 -------LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEM-PEVLGMSDRIL 466 (501)
T ss_pred -------CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999987 599999999996 68899999999
Q ss_pred eecCCceEEecChHHH
Q psy2519 245 LLADSRTAFIGSKDAA 260 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~ 260 (622)
+|++|+++..|+++++
T Consensus 467 ~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 467 VMHEGRISGEFTREQA 482 (501)
T ss_pred EEECCEEEEEeccccC
Confidence 9999999999987754
No 280
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=5.7e-37 Score=348.96 Aligned_cols=215 Identities=23% Similarity=0.290 Sum_probs=178.4
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++.++++||+|+|+ ++.++|+++|+++ ++|+.++++|++ |||||||+|+|+|+.+| .+|+|.+||.
T Consensus 332 ~~~I~~~~vsf~y~-~~~~iL~~inl~i-----~~G~~v~IvG~s-----GsGKSTLl~lL~gl~~p---~~G~I~i~g~ 397 (588)
T PRK13657 332 KGAVEFDDVSFSYD-NSRQGVEDVSFEA-----KPGQTVAIVGPT-----GAGKSTLINLLQRVFDP---QSGRILIDGT 397 (588)
T ss_pred CCeEEEEEEEEEeC-CCCceecceeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCCEEEECCE
Confidence 44689999999985 4457999999999 778888888775 89999999999999999 5899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~ 163 (622)
++.. .+|+.++||+|++.+++. |++||+.++.. . .+++ ++.++++.+++. +..|+.+++
T Consensus 398 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-~----~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~ 467 (588)
T PRK13657 398 DIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRP-D----ATDE----EMRAAAERAQAHDFIERKPDGYDTVVGE 467 (588)
T ss_pred EhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCC-C----CCHH----HHHHHHHHhCHHHHHHhCcccccchhcC
Confidence 9875 478999999999998865 99999988521 1 1222 234445555443 345666665
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
..+.||||||||++|||||+.+|++++||||||+||+.+...+.+.|+++. .++|+|++||++ ...+.+|+|
T Consensus 468 ----~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~--~~~~~~D~i 539 (588)
T PRK13657 468 ----RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRL--STVRNADRI 539 (588)
T ss_pred ----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH--HHHHhCCEE
Confidence 234599999999999999999999999999999999999999999999985 479999999997 455789999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+.+++.
T Consensus 540 i~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 540 LVFDNGRVVESGSFDELV 557 (588)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988775
No 281
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.7e-36 Score=303.60 Aligned_cols=194 Identities=25% Similarity=0.337 Sum_probs=162.6
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCC--CCCCHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS--PSLTVYEHLYF 125 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~--~~lTV~E~l~f 125 (622)
++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.. .++.++|++|++.++ ..+|+.||+.+
T Consensus 4 ~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 74 (223)
T TIGR03771 4 DKGELLGLLGPN-----GAGKTTLLRAILGLIPP---AKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMS 74 (223)
T ss_pred CCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHh
Confidence 467788888777 89999999999999998 58999999998643 467899999998664 34899999987
Q ss_pred HHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q psy2519 126 MALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204 (622)
Q Consensus 126 ~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~ 204 (622)
+...... ......+..+++.++++.+++.+..++.+++ ||||||||++|||+|+.+|++++|||||+|||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 75 GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE--------LSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred ccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhh--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 5321100 0011122345688999999999888888766 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 205 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 205 ~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
.++..+.+.|+++++ +|+|+|++||++ +++.+.||+++++ +|++++.|+++++.
T Consensus 147 ~~~~~l~~~l~~~~~-~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 147 PTQELLTELFIELAG-AGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999999999986 699999999996 6788999999999 89999999988764
No 282
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-36 Score=327.42 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=179.8
Q ss_pred CCcccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 16 NNEEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.+++++||++.|..+. .++|+++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|.
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI-----~~GEivgIiGpN-----GSGKSTLLkiLaGLl~P---~sGeI~I~G~ 86 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEV-----PEGEIVGIIGLN-----GSGKSTLSNLIAGVTMP---NKGTVDIKGS 86 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEE-----eCCCEEEEEcCC-----CCCHHHHHHHHhCCCCC---CceEEEECCE
Confidence 5678899998874433 46899999999 677788888877 89999999999999998 5899999997
Q ss_pred ecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 95 PVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 95 ~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
+. ++.+...+.+.+||+||+.+...... .+..+..++++++++.++|.+..++.+++ |||
T Consensus 87 ~~---------~i~~~~~l~~~lTV~EnL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~~~~--------LSG 146 (549)
T PRK13545 87 AA---------LIAISSGLNGQLTGIENIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQPVKT--------YSS 146 (549)
T ss_pred ee---------eEEeccccCCCCcHHHHHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCccc--------CCH
Confidence 52 22234456788999999988654322 22344456678899999999888888776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||++ +++.++||++++|++|+++..
T Consensus 147 GQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 147 GMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999976 699999999996 688899999999999999999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++++..
T Consensus 225 G~~~el~~ 232 (549)
T PRK13545 225 GDIKEVVD 232 (549)
T ss_pred CCHHHHHh
Confidence 99988764
No 283
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-36 Score=301.17 Aligned_cols=198 Identities=23% Similarity=0.246 Sum_probs=162.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|++++|..++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKV-----KAGEKIGIVGRT-----GAGKSTLILALFRFLEA---EEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcccCC---CCCeEEECCEEh
Confidence 46789999997433357999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.. ..++.+|||+|++.+++ .||+||+.+... .... .+.+.++ .++.+.+ |
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~------~~~~----~~~~~l~-------~~~~~~~--------L 126 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDE------YSDE----EIYGALR-------VSEGGLN--------L 126 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccCC------CCHH----HHHHHhh-------ccCCCCc--------C
Confidence 43 35678999999998877 499999965321 1111 1233333 2334333 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++ .|+|+|++||++ +++.. +|++++|++|+++
T Consensus 127 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~-~~~~~-~d~v~~l~~g~i~ 202 (207)
T cd03369 127 SQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRL-RTIID-YDKILVMDAGEVK 202 (207)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCH-HHHhh-CCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999984 489999999997 46654 9999999999999
Q ss_pred EecCh
Q psy2519 253 FIGSK 257 (622)
Q Consensus 253 ~~G~~ 257 (622)
..|++
T Consensus 203 ~~g~~ 207 (207)
T cd03369 203 EYDHP 207 (207)
T ss_pred ecCCC
Confidence 88763
No 284
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=321.34 Aligned_cols=216 Identities=25% Similarity=0.315 Sum_probs=194.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++|++|.| |+..++++|||++ ++|+.-+++|.| |||||||+++|.|..+| ++|+|.++|++
T Consensus 3 ~~l~~~~itK~f--~~~~And~V~l~v-----~~GeIHaLLGEN-----GAGKSTLm~iL~G~~~P---~~GeI~v~G~~ 67 (501)
T COG3845 3 PALEMRGITKRF--PGVVANDDVSLSV-----KKGEIHALLGEN-----GAGKSTLMKILFGLYQP---DSGEIRVDGKE 67 (501)
T ss_pred ceEEEeccEEEc--CCEEecCceeeee-----cCCcEEEEeccC-----CCCHHHHHHHHhCcccC---CcceEEECCEE
Confidence 356889999986 6889999999999 677788888887 79999999999999999 59999999999
Q ss_pred cCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 96 VEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
+.- ..+..||+|+|++.|+|++||.||+..+..-......+..+.+++++++.++.||.-..|.++++
T Consensus 68 v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~d------- 140 (501)
T COG3845 68 VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD------- 140 (501)
T ss_pred eccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeec-------
Confidence 753 37889999999999999999999999986543222345667788999999999999889999998
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||-||||||.|-++|..+|++|||||||+-|-|....++++.++++++ +|+|||++||-. .|+.++|||+.+|.+|+
T Consensus 141 -LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gk 217 (501)
T COG3845 141 -LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKL-KEVMAIADRVTVLRRGK 217 (501)
T ss_pred -CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhhCeeEEEeCCe
Confidence 999999999999999999999999999999999999999999999998 799999999996 79999999999999999
Q ss_pred eEEecC
Q psy2519 251 TAFIGS 256 (622)
Q Consensus 251 iv~~G~ 256 (622)
++..-+
T Consensus 218 vvgt~~ 223 (501)
T COG3845 218 VVGTVD 223 (501)
T ss_pred EEeeec
Confidence 987655
No 285
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.6e-37 Score=355.22 Aligned_cols=217 Identities=24% Similarity=0.321 Sum_probs=179.7
Q ss_pred ecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 14 FKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
....++++||+|+|+.++.++++++|+++ ++|+.++++|++ |||||||+|+|+|+.+| .+|+|.+||
T Consensus 452 ~~~~i~~~~vsf~y~~~~~~il~~i~l~i-----~~G~~vaivG~s-----GsGKSTL~~ll~g~~~p---~~G~I~idg 518 (694)
T TIGR01846 452 LRGAITFENIRFRYAPDSPEVLSNLNLDI-----KPGEFIGIVGPS-----GSGKSTLTKLLQRLYTP---QHGQVLVDG 518 (694)
T ss_pred CCCeEEEEEEEEEcCCCCccccccceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECC
Confidence 44578999999998655567999999999 678888888776 89999999999999999 489999999
Q ss_pred EecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccC
Q psy2519 94 KPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIG 162 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~ 162 (622)
++++. .+|+.+|||+|++.+++. |++||+.++.. ..+.+ .+.++++..++ ++..|+.++
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~ 588 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP-----GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVG 588 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCC-----CCCHH----HHHHHHHHcChHHHHHhCcCccCcEec
Confidence 99865 478999999999988875 99999987421 11222 23334444443 334566666
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ..+.||||||||++|||||+.+|++|+|||||++||+.+..++.+.|+++. .++|+|++||++ +.+ +.||+
T Consensus 589 ~----~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~-~~~-~~~d~ 660 (694)
T TIGR01846 589 E----KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRL-STV-RACDR 660 (694)
T ss_pred C----CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCCh-HHH-HhCCE
Confidence 5 134599999999999999999999999999999999999999999999985 479999999997 344 67999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
+++|++|++++.|+.+++.
T Consensus 661 ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 661 IIVLEKGQIAESGRHEELL 679 (694)
T ss_pred EEEEeCCEEEEeCCHHHHH
Confidence 9999999999999998875
No 286
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-36 Score=293.86 Aligned_cols=172 Identities=28% Similarity=0.416 Sum_probs=153.1
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++.| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~--~~~~~l~~i~~~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRY--GQKTVLNDVSLNI-----EAGEIVALLGPS-----GSGKSTLLRCIAGLEEP---DSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEE--CCeEEEeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 3578999986 5677999999999 677788888777 89999999999999998 5899999999874
Q ss_pred c------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 98 G------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
. ..++.++|++|++.+++.+|++||+.+.
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------------- 100 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------------------------------------- 100 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec---------------------------------------------
Confidence 2 3567899999999999999999987542
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++||++ +++.+.||++++|++|+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 7999999999999999999999999999999999999999999999874489999999996 67888999999999885
No 287
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=7.3e-37 Score=296.20 Aligned_cols=176 Identities=30% Similarity=0.433 Sum_probs=152.9
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 1 ~~~~l~~~~--~~~~~l~~~~~~i-----~~G~~~~l~G~n-----GsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~ 65 (180)
T cd03214 1 EVENLSVGY--GGRTVLDDLSLSI-----EAGEIVGILGPN-----GAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS 65 (180)
T ss_pred CeeEEEEEE--CCeeeEeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEECCc
Confidence 578999986 4567999999999 677788888776 89999999999999998 58999999998753
Q ss_pred ----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 99 ----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.+++.++|++| +++.+||.+..++.+.+ |||
T Consensus 66 ~~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~~~--------LS~ 100 (180)
T cd03214 66 LSPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRPFNE--------LSG 100 (180)
T ss_pred CCHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCccc--------CCH
Confidence 24566888888 56677777666666655 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|.|+|++||++ +++.++||++++|++|++++.
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999874489999999996 678899999999999999865
Q ss_pred c
Q psy2519 255 G 255 (622)
Q Consensus 255 G 255 (622)
|
T Consensus 180 ~ 180 (180)
T cd03214 180 G 180 (180)
T ss_pred C
Confidence 4
No 288
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.3e-36 Score=292.54 Aligned_cols=169 Identities=28% Similarity=0.428 Sum_probs=149.4
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|..++.++++++|+++ ++|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i-----~~Ge~~~i~G~n-----GsGKStLl~~l~G~~~~---~~G~i~~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSI-----EPGESLAIIGPS-----GSGKSTLARLILGLLRP---TSGRVRLDGADIS 67 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHHhccCC---CCCeEEECCEEcc
Confidence 3578999987433356999999999 677788888777 89999999999999998 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
. .+++.++|++|++.+++. ||+||+ ||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l------------------------------------------------LS 98 (173)
T cd03246 68 QWDPNELGDHVGYLPQDDELFSG-SIAENI------------------------------------------------LS 98 (173)
T ss_pred cCCHHHHHhheEEECCCCccccC-cHHHHC------------------------------------------------cC
Confidence 4 357789999999888874 999987 69
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||++|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|+|+|++||++ +.+ +.||++++|++|++
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999986 699999999996 455 68999999999975
No 289
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-37 Score=340.55 Aligned_cols=214 Identities=18% Similarity=0.246 Sum_probs=179.9
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++. .+++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++.
T Consensus 258 l~~~~~~~~------~~l~~isl~i-----~~Ge~~~iiG~N-----GsGKSTLlk~l~G~~~p---~~G~i~~~g~~~~ 318 (501)
T PRK11288 258 LRLDGLKGP------GLREPISFSV-----RAGEIVGLFGLV-----GAGRSELMKLLYGATRR---TAGQVYLDGKPID 318 (501)
T ss_pred EEEeccccC------CcccceeEEE-----eCCcEEEEEcCC-----CCCHHHHHHHHcCCCcC---CCceEEECCEECC
Confidence 556677642 4799999999 678888888887 79999999999999998 5899999999875
Q ss_pred c-----cccccEEEEecCC---CCCCCCCHHHHHHHHHHcCC-Ccc--ccHHHHHHHHHHHHHHhCCC-cccCCccCCcC
Q psy2519 98 G-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMALLKL-DRR--VKAYQRIALINSLLIELGLM-NSQHTRIGSSS 165 (622)
Q Consensus 98 ~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~l~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~ 165 (622)
. ..++.+||++|++ .+++.+||.||+.+...... ... ....+.+++++++++.+++. +..++.+++
T Consensus 319 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 396 (501)
T PRK11288 319 IRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMN-- 396 (501)
T ss_pred CCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcccc--
Confidence 2 2457899999985 48999999999987532111 000 01223345678999999994 678888877
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+||++|+.+|++|||||||+|||+.++.++.++|+++++ +|.|||++|||+ +++.++||++++
T Consensus 397 ------LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~i~~ 468 (501)
T PRK11288 397 ------LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDL-PEVLGVADRIVV 468 (501)
T ss_pred ------CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHhhCCEEEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 789999999999
Q ss_pred ecCCceEEecChHHH
Q psy2519 246 LADSRTAFIGSKDAA 260 (622)
Q Consensus 246 L~~G~iv~~G~~~~~ 260 (622)
|++|++++.|+++++
T Consensus 469 l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 469 MREGRIAGELAREQA 483 (501)
T ss_pred EECCEEEEEEccccC
Confidence 999999999987753
No 290
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.8e-36 Score=294.49 Aligned_cols=178 Identities=23% Similarity=0.316 Sum_probs=151.7
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc------ccccc
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG------KFRSA 103 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~------~~r~~ 103 (622)
|+.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.. ..++.
T Consensus 3 ~~~~il~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~ 69 (190)
T TIGR01166 3 GGPEVLKGLNFAA-----ERGEVLALLGAN-----GAGKSTLLLHLNGLLRP---QSGAVLIDGEPLDYSRKGLLERRQR 69 (190)
T ss_pred CccceecceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceeEEECCEEccccccchHHHHhh
Confidence 5667999999999 677788888777 89999999999999998 58999999998741 24678
Q ss_pred EEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHH
Q psy2519 104 CGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSF 182 (622)
Q Consensus 104 igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsI 182 (622)
+||++|++. .+...||+||+.+...... ....+..++++++++.+||.+..++.+.+ ||||||||++|
T Consensus 70 i~~~~q~~~~~~~~~tv~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G~~qrv~l 138 (190)
T TIGR01166 70 VGLVFQDPDDQLFAADVDQDVAFGPLNLG---LSEAEVERRVREALTAVGASGLRERPTHC--------LSGGEKKRVAI 138 (190)
T ss_pred EEEEecChhhccccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCchhhhhCChhh--------CCHHHHHHHHH
Confidence 999999973 3335799999998754321 22334456788999999998888888766 99999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 183 ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 183 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||++
T Consensus 139 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~ 187 (190)
T TIGR01166 139 AGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDV 187 (190)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeecc
Confidence 9999999999999999999999999999999999987 699999999996
No 291
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.6e-36 Score=339.24 Aligned_cols=214 Identities=17% Similarity=0.213 Sum_probs=178.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|+++. +++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 268 ~l~~~~l~~~-------~l~~isl~i-----~~Ge~~~l~G~N-----GsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i 327 (510)
T PRK15439 268 VLTVEDLTGE-------GFRNISLEV-----RAGEILGLAGVV-----GAGRTELAETLYGLRPA---RGGRIMLNGKEI 327 (510)
T ss_pred eEEEeCCCCC-------CccceeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHcCCCCC---CCcEEEECCEEC
Confidence 5778888842 589999999 677788888887 89999999999999998 489999999987
Q ss_pred Cc-----cccccEEEEecCC---CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCC
Q psy2519 97 EG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSIT 167 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~ 167 (622)
.. ..++.++||+|++ .+++.+|+.||+...............+.+++++++++.+||. +..++++++
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 403 (510)
T PRK15439 328 NALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAART---- 403 (510)
T ss_pred CCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcccc----
Confidence 53 1356799999984 5889999999996431110000001122345688999999997 678888777
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++|||+ +++.++|||+++|+
T Consensus 404 ----LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~-~~i~~~~d~i~~l~ 477 (510)
T PRK15439 404 ----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDL-EEIEQMADRVLVMH 477 (510)
T ss_pred ----CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 68999999999999
Q ss_pred CCceEEecChHHH
Q psy2519 248 DSRTAFIGSKDAA 260 (622)
Q Consensus 248 ~G~iv~~G~~~~~ 260 (622)
+|+++..|+++++
T Consensus 478 ~G~i~~~~~~~~~ 490 (510)
T PRK15439 478 QGEISGALTGAAI 490 (510)
T ss_pred CCEEEEEEccccC
Confidence 9999999877643
No 292
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.2e-37 Score=355.01 Aligned_cols=214 Identities=19% Similarity=0.257 Sum_probs=176.0
Q ss_pred CCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 16 NNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
..++++||+|+|+.. +.++|+++|+++ ++|+.++++|++ |||||||+++|.|+.+| .+|+|.+||+
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i-----~~Ge~vaIvG~S-----GsGKSTLl~lL~gl~~p---~~G~I~idg~ 543 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTL-----HPGEVVALVGPS-----GSGKSTVAALLQNLYQP---TGGQVLLDGV 543 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhccCC---CCCEEEECCE
Confidence 458899999998533 367999999999 788888888776 89999999999999999 5899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~ 163 (622)
|+.+ .+|++++||+|++.+++. |++|||.++..- .+ ++++.++++..++.+ ..|+.+|+
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~~-----~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige 613 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTD-----TP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613 (711)
T ss_pred EHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCCC-----CC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC
Confidence 9865 478999999999998875 999999886321 12 123445566666543 35666665
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+++|++|+||||||+||+.+...+.+ .. .. .++|+|++||++ +..+.+|+|
T Consensus 614 ----~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~-~~~TvIiItHrl--~~i~~aD~I 683 (711)
T TIGR00958 614 ----KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SR-ASRTVLLIAHRL--STVERADQI 683 (711)
T ss_pred ----CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--cc-CCCeEEEEeccH--HHHHhCCEE
Confidence 234599999999999999999999999999999999999998888 22 22 579999999997 345679999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+.+++.+
T Consensus 684 ivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 684 LVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEECCEEEEeeCHHHHHh
Confidence 9999999999999998763
No 293
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.7e-36 Score=293.10 Aligned_cols=175 Identities=29% Similarity=0.449 Sum_probs=151.8
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|...+.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i-----~~Ge~~~i~G~n-----GsGKStLl~~l~G~~~~---~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLEL-----KQGEKIALLGRS-----GSGKSTLLQLLTGDLKP---QQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCC---CCCEEEECCEEHH
Confidence 3578999987322236999999999 677788888777 89999999999999998 5899999999875
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. .+++.++|++|++.+++ .|++||+ +.+ |||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i-------------------------------------~~~--------LS~ 101 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL-------------------------------------GRR--------FSG 101 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh-------------------------------------ccc--------CCH
Confidence 3 35778999999988776 6999987 333 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||++ +++ +.+|++++|++|++++.
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~-~~~-~~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHL-TGI-EHMDKILFLENGKIIMQ 177 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HHH-HhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999995 479999999997 466 47999999999999876
Q ss_pred c
Q psy2519 255 G 255 (622)
Q Consensus 255 G 255 (622)
|
T Consensus 178 ~ 178 (178)
T cd03247 178 G 178 (178)
T ss_pred C
Confidence 4
No 294
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=9.1e-37 Score=346.36 Aligned_cols=217 Identities=23% Similarity=0.321 Sum_probs=181.7
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.+.++++||+|+|...+.++++++|+++ ++|+.+.|+|++ |||||||+++|+|+.+| .+|+|.+||.
T Consensus 328 ~~~i~~~~v~f~y~~~~~~il~~inl~i-----~~G~~v~IvG~s-----GsGKSTLl~lL~gl~~~---~~G~I~i~g~ 394 (571)
T TIGR02203 328 RGDVEFRNVTFRYPGRDRPALDSISLVI-----EPGETVALVGRS-----GSGKSTLVNLIPRFYEP---DSGQILLDGH 394 (571)
T ss_pred CCeEEEEEEEEEcCCCCCccccCeeEEe-----cCCCEEEEECCC-----CCCHHHHHHHHHhccCC---CCCeEEECCE
Confidence 3568899999998544567999999999 788888888776 89999999999999999 4899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~ 163 (622)
++++ .+++.++||+|++.+++. |++|||.++.. +..++ ++++++++.+|+. +..|+.+++
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~ 465 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGE 465 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC----CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecC
Confidence 9864 478899999999988866 99999987631 01122 2345566666653 345666765
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
..+.||||||||++|||+++.+|++++|||||++||+.+..++.+.|++++ .++|+|++||++ ...+.||+|
T Consensus 466 ----~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~i 537 (571)
T TIGR02203 466 ----NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRI 537 (571)
T ss_pred ----CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEE
Confidence 234599999999999999999999999999999999999999999999986 379999999997 556889999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+.+++.
T Consensus 538 i~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 538 VVMDDGRIVERGTHNELL 555 (571)
T ss_pred EEEeCCEEEeeCCHHHHH
Confidence 999999999999999875
No 295
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-36 Score=344.57 Aligned_cols=215 Identities=20% Similarity=0.264 Sum_probs=178.3
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++|++|+|+.++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.+||++
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i-----~~G~~~~ivG~s-----GsGKSTLl~ll~g~~~p---~~G~i~~~g~~ 378 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTL-----KPGQMLGICGPT-----GSGKSTLLSLIQRHFDV---SEGDIRFHDIP 378 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcccCC---CCCEEEECCEE
Confidence 457899999998655677999999999 678888888776 89999999999999999 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~~ 164 (622)
+.. .+|+.++||+|++.+++. |++||+.++... .+.+ .++++++..++ ++..|+.+++
T Consensus 379 ~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~-----~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~- 447 (569)
T PRK10789 379 LTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRPD-----ATQQ----EIEHVARLASVHDDILRLPQGYDTEVGE- 447 (569)
T ss_pred HhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCCC-----CCHH----HHHHHHHHcCCHHHHHhCcCcccceecC-
Confidence 864 478899999999998875 999999875311 1222 23344444444 3445666665
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|++++|||||++||+.+..++.+.|+++. .|+|+|++||++ +. .+.+|+++
T Consensus 448 ---~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~-~~-~~~~d~i~ 520 (569)
T PRK10789 448 ---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL-SA-LTEASEIL 520 (569)
T ss_pred ---CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch-hH-HHcCCEEE
Confidence 124599999999999999999999999999999999999999999999985 489999999997 34 46799999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+.+++.
T Consensus 521 ~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 521 VMQHGHIAQRGNHDQLA 537 (569)
T ss_pred EEeCCEEEEecCHHHHH
Confidence 99999999999998775
No 296
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.5e-36 Score=340.78 Aligned_cols=214 Identities=20% Similarity=0.233 Sum_probs=173.6
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+|+|+ ++.++++++|+++ ++|+.+.++|++ |||||||+++|+|+.+| .+|+|.+||.+
T Consensus 333 ~~i~~~~v~~~y~-~~~~~l~~i~~~i-----~~G~~~~ivG~s-----GsGKSTL~~ll~g~~~~---~~G~i~~~g~~ 398 (585)
T TIGR01192 333 GAVEFRHITFEFA-NSSQGVFDVSFEA-----KAGQTVAIVGPT-----GAGKTTLINLLQRVYDP---TVGQILIDGID 398 (585)
T ss_pred CeEEEEEEEEECC-CCCccccceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHccCCCC---CCCEEEECCEE
Confidence 4588999999984 3356899999999 678888888776 89999999999999999 59999999998
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-------CCcccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~v~~~ 164 (622)
+.. .+++.++||+|++.+++ .|++||+.++... .++++. .+.++..+ +.+..|+.+++
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~-----~~~~~~----~~a~~~~~~~~~i~~l~~g~~t~~~~- 467 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGREG-----ATDEEV----YEAAKAAAAHDFILKRSNGYDTLVGE- 467 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCCC-----CCHHHH----HHHHHHhCcHHHHHhccccccchhcC-
Confidence 864 47889999999998886 5999999886311 122222 22222222 22334555554
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|++|+|||||++||+.+..++.+.|+++. .++|+|++||++ +.+ +.||+++
T Consensus 468 ---~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~-~~~-~~~d~i~ 540 (585)
T TIGR01192 468 ---RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRL-STV-RNADLVL 540 (585)
T ss_pred ---CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCh-HHH-HcCCEEE
Confidence 123499999999999999999999999999999999999999999999885 489999999997 455 6799999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+.+++.
T Consensus 541 ~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 541 FLDQGRLIEKGSFQELI 557 (585)
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999988765
No 297
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2e-35 Score=299.81 Aligned_cols=202 Identities=17% Similarity=0.171 Sum_probs=164.9
Q ss_pred ccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccE
Q psy2519 25 FSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSAC 104 (622)
Q Consensus 25 ~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~i 104 (622)
|+|+ +....+.+++|++.-+.-.+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+ .+
T Consensus 1 ~~y~-~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~N-----GsGKSTLlk~L~G~~~p---~~G~i~~~g~--------~i 63 (246)
T cd03237 1 YTYP-TMKKTLGEFTLEVEGGSISESEVIGILGPN-----GIGKTTFIKMLAGVLKP---DEGDIEIELD--------TV 63 (246)
T ss_pred CCCc-ccccccCcEEEEEecCCcCCCCEEEEECCC-----CCCHHHHHHHHhCCCcC---CCCeEEECCc--------eE
Confidence 3453 444577888888854444577888888887 89999999999999998 4899999985 58
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHH
Q psy2519 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFAT 184 (622)
Q Consensus 105 gyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~ 184 (622)
+|++|+....+.+||+|++.+...... . ....++++++.++|.+..++.+++ |||||||||+||+
T Consensus 64 ~~~~q~~~~~~~~tv~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~~--------LSgGe~qrv~iar 128 (246)
T cd03237 64 SYKPQYIKADYEGTVRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVPE--------LSGGELQRVAIAA 128 (246)
T ss_pred EEecccccCCCCCCHHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChhh--------CCHHHHHHHHHHH
Confidence 999999887788999999976533211 1 112356889999998888888776 9999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE--EecChHH
Q psy2519 185 ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA--FIGSKDA 259 (622)
Q Consensus 185 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~ 259 (622)
+|+.+|+++||||||++||+.++..+.+.|++++++.|+|||++||++ +++..+||++++|+++..+ ..+++.+
T Consensus 129 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 129 CLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 999999999999999999999999999999999875689999999996 6888899999999765433 3444544
No 298
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3e-36 Score=342.46 Aligned_cols=215 Identities=21% Similarity=0.298 Sum_probs=178.1
Q ss_pred CCcccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 16 NNEEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
..++++||+|+|+.++ .++++++|+++ ++|+.++++|++ |||||||+|+|+|+.+| .+|+|.+||.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i-----~~Ge~i~IvG~s-----GsGKSTLlklL~gl~~p---~~G~I~i~g~ 402 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTV-----RPGETVALVGPS-----GAGKSTLFQLLLRFYDP---QSGRILLDGV 402 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEe-----cCCCEEEEECCC-----CCCHHHHHHHHHhccCC---CCCEEEECCE
Confidence 4588999999985433 57999999999 788888888776 89999999999999999 4899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~ 163 (622)
++++ .+++.+||++|++.+++. |++|||.++.. ..+. +++.++++.+++.+ ..|+.+++
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~ 472 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRP-----DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE 472 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC
Confidence 9864 478899999999988866 99999987521 1121 23455566665532 34555554
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++||||++.+|++|+|||||++||+.++..+.+.|+++. .++|+|++||++ +..+.+|++
T Consensus 473 ----~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~--~~~~~~d~v 544 (576)
T TIGR02204 473 ----RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRL--ATVLKADRI 544 (576)
T ss_pred ----CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEE
Confidence 234599999999999999999999999999999999999999999999985 479999999997 445789999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+.+++.
T Consensus 545 i~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 545 VVMDQGRIVAQGTHAELI 562 (576)
T ss_pred EEEECCEEEeeecHHHHH
Confidence 999999999999988764
No 299
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=279.14 Aligned_cols=203 Identities=24% Similarity=0.342 Sum_probs=176.2
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++++.. ..++.++|+++||++ .+|+...|.|| ||||||||+|+++.+..| ++|++++.|++++.
T Consensus 5 e~kq~~y--~a~~a~il~~isl~v-----~~Ge~iaitGP-----SG~GKStllk~va~Lisp---~~G~l~f~Ge~vs~ 69 (223)
T COG4619 5 ELKQVGY--LAGDAKILNNISLSV-----RAGEFIAITGP-----SGCGKSTLLKIVASLISP---TSGTLLFEGEDVST 69 (223)
T ss_pred HHHHHHh--hcCCCeeecceeeee-----cCCceEEEeCC-----CCccHHHHHHHHHhccCC---CCceEEEcCccccc
Confidence 3444444 357888999999999 57777777766 489999999999999999 59999999999975
Q ss_pred ----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccC
Q psy2519 99 ----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLS 173 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLS 173 (622)
.+|+.++|+.|.+.||+. ||++|+.|.-+.+..+. .+++..+.|++++|.+. .++.+.+ ||
T Consensus 70 ~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k~it~--------lS 135 (223)
T COG4619 70 LKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTKNITE--------LS 135 (223)
T ss_pred cChHHHHHHHHHHHcCcccccc-chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcchhhh--------cc
Confidence 489999999999999998 99999999887764321 24456789999999764 5677766 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||++|+|.|..-|+|||||||||+||+.+.+.|-++|.++.+++...++.+|||+ ++..+.+|+++-+..|++
T Consensus 136 GGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 136 GGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred chHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999999999999999999999999999999999999999999877899999999997 677789999999999876
No 300
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=283.62 Aligned_cols=220 Identities=21% Similarity=0.274 Sum_probs=193.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC-E
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG-K 94 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G-~ 94 (622)
..++++||+.+ ||+-.++.++|+++ .+|+-.++|||| ||||||+|++|+|..+| .+|+++++| .
T Consensus 4 ~iL~~~~vsVs--F~GF~Aln~ls~~v-----~~Gelr~lIGpN-----GAGKTT~mD~ItGKtrp---~~G~v~f~g~~ 68 (249)
T COG4674 4 IILYLDGVSVS--FGGFKALNDLSFSV-----DPGELRVLIGPN-----GAGKTTLMDVITGKTRP---QEGEVLFDGDT 68 (249)
T ss_pred ceEEEeceEEE--EcceeeeeeeEEEe-----cCCeEEEEECCC-----CCCceeeeeeecccCCC---CcceEEEcCch
Confidence 34678999998 58888999999999 678888888888 79999999999999999 589999999 7
Q ss_pred ecCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-----cccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 95 PVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-----RVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
++++ ..|..||--||.+..|+.+||+|||..+......- .....+.+++++++|+..||.+.+|...+.
T Consensus 69 dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~- 147 (249)
T COG4674 69 DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL- 147 (249)
T ss_pred hhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhh-
Confidence 7765 25788999999999999999999999875432110 011234467899999999999999999888
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||.||||++.|++-++.+|++|+||||++|+--....+.-++|++++. +.+|+++.||+ ..+.+++|+|.
T Consensus 148 -------LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM-~Fvr~~A~~VT 217 (249)
T COG4674 148 -------LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDM-GFVREIADKVT 217 (249)
T ss_pred -------hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccH-HHHHHhhheeE
Confidence 999999999999999999999999999999999999999999999985 68999999996 79999999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|.+...|+.+++.
T Consensus 218 Vlh~G~VL~EGsld~v~ 234 (249)
T COG4674 218 VLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred EEeccceeecccHHHhh
Confidence 99999999999999874
No 301
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=338.39 Aligned_cols=218 Identities=24% Similarity=0.325 Sum_probs=189.5
Q ss_pred CcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++|+++.|..+ ..++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.+||+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~Gl~~~---~~G~i~~~g~ 70 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDI-----YAGEMVAIVGAS-----GSGKSTLMNILGCLDKP---TSGTYRVAGQ 70 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeEEEECCE
Confidence 57899999998533 357999999999 678888888887 89999999999999998 5899999999
Q ss_pred ecCc----c----ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 95 PVEG----K----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~----~----~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
++.. + .++.++|++|++.+++.+|+.||+.+...... ....+.++++.++++.+||.+..|+.+++
T Consensus 71 ~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~lgl~~~~~~~~~~--- 144 (648)
T PRK10535 71 DVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG---LERKQRLLRAQELLQRLGLEDRVEYQPSQ--- 144 (648)
T ss_pred EcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhcCCccc---
Confidence 9764 1 25789999999999999999999998654322 23345566788999999999888888766
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.++++++ .|+|+|++||++ +.+ +.|||+++|
T Consensus 145 -----LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~-~~~-~~~d~i~~l 216 (648)
T PRK10535 145 -----LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDP-QVA-AQAERVIEI 216 (648)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCH-HHH-HhCCEEEEE
Confidence 999999999999999999999999999999999999999999999986 699999999996 444 679999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|++++..
T Consensus 217 ~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 217 RDGEIVRNPPAQEKV 231 (648)
T ss_pred ECCEEEeecCccccc
Confidence 999999999998764
No 302
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.9e-36 Score=367.85 Aligned_cols=221 Identities=23% Similarity=0.338 Sum_probs=180.8
Q ss_pred cCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-----------
Q psy2519 15 KNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD----------- 82 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~----------- 82 (622)
...++++||+|+|+.+ +.++|+++|+++ ++|+.++++|++ |||||||+++|.|+..|.
T Consensus 1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i-----~~G~~vAIVG~S-----GsGKSTl~~LL~r~ydp~~~~~~~~~~~~ 1232 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSC-----DSKKTTAIVGET-----GSGKSTVMSLLMRFYDLKNDHHIVFKNEH 1232 (1466)
T ss_pred CceEEEEEEEEECCCCCCCccccCeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHHhCCCcccccccccccc
Confidence 3568999999999643 458999999999 678888888775 899999999999999872
Q ss_pred ----------------------------------------CceeeEEEECCEecCc----cccccEEEEecCCCCCCCCC
Q psy2519 83 ----------------------------------------CIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLT 118 (622)
Q Consensus 83 ----------------------------------------~~~~G~I~~~G~~~~~----~~r~~igyV~Q~~~l~~~lT 118 (622)
...+|+|++||.++.. .+|+.+|||+|++.||+ .|
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gT 1311 (1466)
T PTZ00265 1233 TNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MS 1311 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-cc
Confidence 0148999999999865 48999999999999885 59
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh-------CCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC
Q psy2519 119 VYEHLYFMALLKLDRRVKAYQRIALINSLLIEL-------GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191 (622)
Q Consensus 119 V~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~ 191 (622)
++|||.++.. ..+.++ ++++++.. .|++..|+.+|+ ....||||||||++|||||+.+|+
T Consensus 1312 IreNI~~g~~-----~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe----~G~~LSGGQkQRIaIARALlr~p~ 1378 (1466)
T PTZ00265 1312 IYENIKFGKE-----DATRED----VKRACKFAAIDEFIESLPNKYDTNVGP----YGKSLSGGQKQRIAIARALLREPK 1378 (1466)
T ss_pred HHHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCC----CCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999732 112222 33333333 345667888886 234599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC----CceE-EecChHHHH
Q psy2519 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD----SRTA-FIGSKDAAL 261 (622)
Q Consensus 192 lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~----G~iv-~~G~~~~~~ 261 (622)
|||||||||+||+.+...|.+.|+++.+..++|+|+++|.+ ...+.||+|++|++ |+++ +.|+.++++
T Consensus 1379 ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1379 ILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999998632589999999996 34578999999999 9955 899999875
No 303
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-35 Score=293.06 Aligned_cols=193 Identities=22% Similarity=0.287 Sum_probs=150.0
Q ss_pred cccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||++.|..++ .++++++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i-----~~G~~~~i~G~n-----G~GKSTLl~~i~G~~~~---~~G~i~~~g- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEV-----PKGELVAIVGPV-----GSGKSSLLSALLGELEK---LSGSVSVPG- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCcCCC---CCCeEEEcC-
Confidence 36899999974322 36999999999 678888888777 89999999999999998 589999998
Q ss_pred ecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHH-----HHHHHHHHh--CCCcccCCccCCcCCC
Q psy2519 95 PVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA-----LINSLLIEL--GLMNSQHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~v~~~~~~ 167 (622)
.+||++|++.++ ..|++||+.+.... ......+ .+.+.++.+ ++....+....
T Consensus 67 --------~i~~~~q~~~l~-~~t~~enl~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----- 126 (204)
T cd03250 67 --------SIAYVSQEPWIQ-NGTIRENILFGKPF------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGI----- 126 (204)
T ss_pred --------EEEEEecCchhc-cCcHHHHhccCCCc------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCC-----
Confidence 599999999887 46999999885321 1111111 011222222 22222333333
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~-~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+ +++++++ .|.|||++||++ +.+.. +|++++|
T Consensus 127 ---~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~-~~~~~-~d~i~~l 200 (204)
T cd03250 127 ---NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQL-QLLPH-ADQIVVL 200 (204)
T ss_pred ---cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCH-HHHhh-CCEEEEE
Confidence 399999999999999999999999999999999999999998 5677766 589999999996 56665 9999999
Q ss_pred cCCc
Q psy2519 247 ADSR 250 (622)
Q Consensus 247 ~~G~ 250 (622)
++|+
T Consensus 201 ~~G~ 204 (204)
T cd03250 201 DNGR 204 (204)
T ss_pred eCCC
Confidence 9985
No 304
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-35 Score=288.53 Aligned_cols=191 Identities=17% Similarity=0.195 Sum_probs=159.8
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| ++..+++ +|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~--~~~~l~~-vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNI--EQKNLFD-LSITF-----LPSAITYIKGAN-----GCGKSSLLRMIAGIMQP---SSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEE--CCcEEEE-EEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCcccC
Confidence 5689999997 4555555 99998 677788888777 89999999999999998 5899999999875
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
...++.++|++|+..+++.+||+||+.+...... ..++++++++.+++.+..++.+++ ||||||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G~~ 129 (195)
T PRK13541 66 NIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDLLDEKCYS--------LSSGMQ 129 (195)
T ss_pred hhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc--------cHHHHHHHHHHcCCHhhhccChhh--------CCHHHH
Confidence 4334569999999888889999999988653321 123567889999998878887766 999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++.++ .|.|+|++||++ +.+ +.+|-+
T Consensus 130 ~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~i-~~~~~~ 192 (195)
T PRK13541 130 KIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLE-SSI-KSAQIL 192 (195)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCc-ccc-chhhee
Confidence 999999999999999999999999999999999999988765 689999999997 344 346544
No 305
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-35 Score=329.37 Aligned_cols=210 Identities=19% Similarity=0.268 Sum_probs=174.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|.
T Consensus 1 ml~i~~ls~~~--~~~~il~~vsl~i-----~~Ge~~~liG~N-----GsGKSTLl~~l~Gl~~p---~~G~i~~~~~-- 63 (530)
T PRK15064 1 MLSTANITMQF--GAKPLFENISVKF-----GGGNRYGLIGAN-----GCGKSTFMKILGGDLEP---SAGNVSLDPN-- 63 (530)
T ss_pred CEEEEEEEEEe--CCcEeEeCCEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEecCC--
Confidence 36789999986 6678999999999 678888888887 89999999999999998 4899999873
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHH-cC-----------CCc-cc----------------cHHHHHHHHHHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL-LK-----------LDR-RV----------------KAYQRIALINSL 147 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~-l~-----------~~~-~~----------------~~~~~~~~v~~~ 147 (622)
+.+|||+|++.+++.+||+|++.++.. .. .+. .. ...+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 459999999989999999999987531 00 000 00 001224568899
Q ss_pred HHHhCCCccc-CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Q psy2519 148 LIELGLMNSQ-HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226 (622)
Q Consensus 148 l~~lgL~~~~-~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi 226 (622)
++.+||.+.. ++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||
T Consensus 139 l~~~gl~~~~~~~~~~~--------LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tii 206 (530)
T PRK15064 139 LLGVGIPEEQHYGLMSE--------VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMI 206 (530)
T ss_pred HHhCCCChhHhcCchhh--------cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEE
Confidence 9999997643 456666 999999999999999999999999999999999999999999863 589999
Q ss_pred EEeccCcHHHHhhccceeeecCCce-EEecChHHHH
Q psy2519 227 CTIHQPSSELIDMFDKIILLADSRT-AFIGSKDAAL 261 (622)
Q Consensus 227 ~~tH~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~~~ 261 (622)
++||++ +.+.++||++++|++|++ ++.|++++..
T Consensus 207 ivsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 207 IISHDR-HFLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred EEeCCH-HHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 999996 688899999999999999 5889988664
No 306
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=281.88 Aligned_cols=218 Identities=24% Similarity=0.304 Sum_probs=178.7
Q ss_pred CcccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
++++.|+.+.+..| +++++++++|++ ..++-+.+||.| |||||||+|+|+|.+.| ++|+|.++|
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I-----~~g~FvtViGsN-----GAGKSTlln~iaG~l~~---t~G~I~Idg 67 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEI-----AEGDFVTVIGSN-----GAGKSTLLNAIAGDLKP---TSGQILIDG 67 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceee-----cCCceEEEEcCC-----CccHHHHHHHhhCcccc---CCceEEECc
Confidence 35677777776555 378999999999 444455555555 89999999999999999 599999999
Q ss_pred EecCc----cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccH---HHHHHHHHHHHHHh--CCCcccCCccC
Q psy2519 94 KPVEG----KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKA---YQRIALINSLLIEL--GLMNSQHTRIG 162 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~v~ 162 (622)
.++++ +....++-|||++ ...|.||++||+..+..-...+.... ..+++.-.+-++.+ ||++..+++++
T Consensus 68 ~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig 147 (263)
T COG1101 68 VDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG 147 (263)
T ss_pred eecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh
Confidence 99986 2446678899997 48999999999999764322122221 23344445566666 55788899988
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
- |||||||-+++++|-++.|++|||||-|++|||.++..+++.-.++.++.+.|.+||||++ +++.++.+|
T Consensus 148 l--------LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~R 218 (263)
T COG1101 148 L--------LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNR 218 (263)
T ss_pred h--------ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCe
Confidence 8 9999999999999999999999999999999999999999999999988899999999996 678899999
Q ss_pred eeeecCCceEEecC
Q psy2519 243 IILLADSRTAFIGS 256 (622)
Q Consensus 243 v~~L~~G~iv~~G~ 256 (622)
.++|++|+||.+-.
T Consensus 219 lImLh~G~IvlDv~ 232 (263)
T COG1101 219 LIMLHSGKIVLDVT 232 (263)
T ss_pred EEEEeCCeEEEEcc
Confidence 99999999998643
No 307
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-36 Score=290.85 Aligned_cols=218 Identities=23% Similarity=0.331 Sum_probs=188.1
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+..| +++.+|+++|.+| .+|+.++|+|+| ||||||||++++|..+|+ +|.+.+.|+
T Consensus 29 ~~li~l~~v~v~r--~gk~iL~~isW~V-----~~ge~W~I~G~N-----GsGKTTLL~ll~~~~~ps---sg~~~~~G~ 93 (257)
T COG1119 29 EPLIELKNVSVRR--NGKKILGDLSWQV-----NPGEHWAIVGPN-----GAGKTTLLSLLTGEHPPS---SGDVTLLGR 93 (257)
T ss_pred cceEEecceEEEE--CCEeeccccceee-----cCCCcEEEECCC-----CCCHHHHHHHHhcccCCC---CCceeeeee
Confidence 3558999999985 8889999999999 789999999998 799999999999999994 899999999
Q ss_pred ecCc-----cccccEEEEecC--CCCCCCCCHHHHHHHH--HHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcC
Q psy2519 95 PVEG-----KFRSACGFMYQH--DLFSPSLTVYEHLYFM--ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 165 (622)
Q Consensus 95 ~~~~-----~~r~~igyV~Q~--~~l~~~lTV~E~l~f~--~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~ 165 (622)
+..+ ++|++||+|.-+ ..+.+..+|+|-+.-+ +..........++..+++..+++.+|+.+.+|++.++
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~-- 171 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS-- 171 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhh--
Confidence 8754 579999999753 4567788899877433 2222222122355677899999999999999999988
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEEeccCcHHHHhhcccee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ-RKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~-~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||-||||||-|||||+++|++||||||++|||...+..+++.|.+++.. .+.++|+|||.+ +|+-.-+++++
T Consensus 172 ------LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~l 244 (257)
T COG1119 172 ------LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRL 244 (257)
T ss_pred ------cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEE
Confidence 9999999999999999999999999999999999999999999999862 278999999996 78989999999
Q ss_pred eecCCceEEecC
Q psy2519 245 LLADSRTAFIGS 256 (622)
Q Consensus 245 ~L~~G~iv~~G~ 256 (622)
++++|+++++|.
T Consensus 245 ll~~g~v~~~g~ 256 (257)
T COG1119 245 LLKEGEVVAQGK 256 (257)
T ss_pred EeeCCceeeccc
Confidence 999999999874
No 308
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=327.47 Aligned_cols=215 Identities=18% Similarity=0.220 Sum_probs=177.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||++.+ .++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 312 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDL-----HKGEILGIAGLV-----GAKRTDIVETLFGIREK---SAGTITLHGKKI 312 (491)
T ss_pred EEEEeCccccc----CcccceeeEEE-----eCCcEEEEecCC-----CCCHHHHHHHHcCCCcC---CccEEEECCEEC
Confidence 47889999963 35899999999 678888888887 89999999999999998 489999999987
Q ss_pred Cc-----cccccEEEEecCC---CCCCCCCHHHHHHHHH-H-c-CCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCc
Q psy2519 97 EG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMA-L-L-KLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSS 164 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~-~-l-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~ 164 (622)
.. ..++.+||++|+. .+++.+|+.+|..+.. . . .........+.+++++++++.+++. +..++.+++
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 391 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGS- 391 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccccc-
Confidence 53 1356799999984 4788999887743321 0 0 0000012233445678999999995 467888776
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|.|||++|||+ +++.++|||++
T Consensus 392 -------LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~-~~~~~~~d~v~ 462 (491)
T PRK10982 392 -------LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEM-PELLGITDRIL 462 (491)
T ss_pred -------CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCCh-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 68889999999
Q ss_pred eecCCceEEecChH
Q psy2519 245 LLADSRTAFIGSKD 258 (622)
Q Consensus 245 ~L~~G~iv~~G~~~ 258 (622)
+|++|+++..++.+
T Consensus 463 ~l~~g~i~~~~~~~ 476 (491)
T PRK10982 463 VMSNGLVAGIVDTK 476 (491)
T ss_pred EEECCEEEEEEccc
Confidence 99999999877554
No 309
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.4e-35 Score=291.66 Aligned_cols=196 Identities=21% Similarity=0.284 Sum_probs=156.1
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
.+.|+.+.|. ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++..
T Consensus 2 ~~~~~~~~~~-~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~ 67 (218)
T cd03290 2 QVTNGYFSWG-SGLATLSNINIRI-----PTGQLTMIVGQV-----GCGKSSLLLAILGEMQT---LEGKVHWSNKNESE 67 (218)
T ss_pred eeeeeEEecC-CCCcceeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCC---CCCeEEECCccccc
Confidence 5778889874 2467999999999 677788888777 89999999999999988 48999999987642
Q ss_pred --------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-----------cCC
Q psy2519 99 --------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-----------QHT 159 (622)
Q Consensus 99 --------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~ 159 (622)
..++.++|++|++.++ ..|++||+.+.... ... +.+++++.++|.+. .++
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 136 (218)
T cd03290 68 PSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGE 136 (218)
T ss_pred ccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CHH----HHHHHHHHhCcHHHHHhCcCccccCccc
Confidence 2356799999998877 57999999875311 111 12344555555432 223
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~--~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
.+.+ ||||||||++|||+|+.+|++|||||||+|||+.++.++++ +++.+.+ .|.|+|++||++ +.+
T Consensus 137 ~~~~--------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~-~~~- 205 (218)
T cd03290 137 RGIN--------LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKL-QYL- 205 (218)
T ss_pred CCCc--------CCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-
Confidence 3333 99999999999999999999999999999999999999998 6666655 689999999997 455
Q ss_pred hhccceeeecCCc
Q psy2519 238 DMFDKIILLADSR 250 (622)
Q Consensus 238 ~~~D~v~~L~~G~ 250 (622)
..+|++++|++|.
T Consensus 206 ~~~d~i~~l~~G~ 218 (218)
T cd03290 206 PHADWIIAMKDGS 218 (218)
T ss_pred hhCCEEEEecCCC
Confidence 5799999999884
No 310
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.6e-35 Score=328.30 Aligned_cols=216 Identities=18% Similarity=0.189 Sum_probs=173.8
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++|+++.| ++.++++++|+++ .+|+.+.++|+| |||||||+|+|+|+.++. .+|+|.++|++
T Consensus 259 ~~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~i~G~N-----GsGKSTLl~~l~G~~~~~--~~G~i~~~g~~ 324 (490)
T PRK10938 259 PRIVLNNGVVSY--NDRPILHNLSWQV-----NPGEHWQIVGPN-----GAGKSTLLSLITGDHPQG--YSNDLTLFGRR 324 (490)
T ss_pred ceEEEeceEEEE--CCeeEEeeceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCCCcc--cCCeEEEeccc
Confidence 368899999986 6667999999999 678888888887 899999999999987541 38999999987
Q ss_pred cCc-----cccccEEEEecCCCCCC--CCCHHHHHHHHHHc--CCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcC
Q psy2519 96 VEG-----KFRSACGFMYQHDLFSP--SLTVYEHLYFMALL--KLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSS 165 (622)
Q Consensus 96 ~~~-----~~r~~igyV~Q~~~l~~--~lTV~E~l~f~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~ 165 (622)
+.. ..++.+||++|++.+++ ..|++|++.+.... ....... .+.+++++++++.+||.+ ..++++++
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 401 (490)
T PRK10938 325 RGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHS-- 401 (490)
T ss_pred CCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhh--
Confidence 532 24678999999876544 35777776543211 1100111 223456889999999987 78888777
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh-hcccee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKII 244 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~-~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|++++++.+.|||++|||+ +++.+ ++|+++
T Consensus 402 ------LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~ 474 (490)
T PRK10938 402 ------LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLE 474 (490)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEE
Confidence 9999999999999999999999999999999999999999999999874345799999996 57766 589999
Q ss_pred eecCCceEEec
Q psy2519 245 LLADSRTAFIG 255 (622)
Q Consensus 245 ~L~~G~iv~~G 255 (622)
+|++|++++.-
T Consensus 475 ~l~~G~i~~~~ 485 (490)
T PRK10938 475 FVPDGDIYRYV 485 (490)
T ss_pred EecCCceEEee
Confidence 99999988754
No 311
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-35 Score=281.76 Aligned_cols=167 Identities=31% Similarity=0.453 Sum_probs=145.8
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++.|..++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i-----~~G~~~~l~G~n-----GsGKstLl~~i~G~~~~---~~G~i~~~g~~~~ 67 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTI-----KPGEKVAIVGPS-----GSGKSTLLKLLLRLYDP---TSGEILIDGVDLR 67 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcCCCC---CCCEEEECCEEhh
Confidence 3578999987322237899999999 678888888777 89999999999999998 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
. ..++.++|++|++.+++ .|+.||+ ||
T Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l------------------------------------------------LS 98 (171)
T cd03228 68 DLDLESLRKNIAYVPQDPFLFS-GTIRENI------------------------------------------------LS 98 (171)
T ss_pred hcCHHHHHhhEEEEcCCchhcc-chHHHHh------------------------------------------------hC
Confidence 3 35678999999987776 5998886 69
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||++|||+|+.+|++++|||||+|||+.++.++.+.|+++++ ++|+|++||++ +++.. ||++++|++|+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999953 69999999996 56766 99999999985
No 312
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-35 Score=291.30 Aligned_cols=187 Identities=24% Similarity=0.296 Sum_probs=165.6
Q ss_pred CcccCCccccccccc-------eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 17 NEEVPNVDFSEIVGS-------VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~-------~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
.++++||++.|..+. +.++++||+++ ++|+.+.++|.+ |||||||-|+|.|+.+| ++|+|
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i-----~~ge~~glVGES-----G~GKSTlgr~i~~L~~p---t~G~i 70 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSI-----KEGETLGLVGES-----GCGKSTLGRLILGLEEP---TSGEI 70 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEE-----cCCCEEEEEecC-----CCCHHHHHHHHHcCcCC---CCceE
Confidence 568899999987653 58999999999 677777777664 89999999999999999 59999
Q ss_pred EECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCC
Q psy2519 90 RVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQ 168 (622)
Q Consensus 90 ~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~ 168 (622)
.++|+++.... ++++.+++.++|+.+||.+ ..+++ |++
T Consensus 71 ~f~g~~i~~~~------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----Phe 109 (268)
T COG4608 71 LFEGKDITKLS------------------------------------KEERRERVLELLEKVGLPEEFLYRY-----PHE 109 (268)
T ss_pred EEcCcchhhcc------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----Ccc
Confidence 99999865311 2445678999999999964 56776 566
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||||||++|||||+.+|+++++|||||+||...+.+++++|+++.++.|.|.++++||. +.+..++||+.+|..
T Consensus 110 ---lSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~ 185 (268)
T COG4608 110 ---LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYL 185 (268)
T ss_pred ---cCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEec
Confidence 9999999999999999999999999999999999999999999999998899999999996 789999999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|++|..|+.++++
T Consensus 186 G~iVE~g~~~~~~ 198 (268)
T COG4608 186 GKIVEIGPTEEVF 198 (268)
T ss_pred CceeEecCHHHHh
Confidence 9999999999876
No 313
>KOG0055|consensus
Probab=100.00 E-value=1.5e-35 Score=342.08 Aligned_cols=221 Identities=24% Similarity=0.337 Sum_probs=186.0
Q ss_pred eecCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 13 LFKNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
...++++++||+|+|+.. .+++|+|+||++ .+|+.++++|+ |||||||.+.+|-....| ++|+|.+
T Consensus 983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i-----~~GqTvALVG~-----SGsGKSTvI~LLeRfYdp---~~G~V~I 1049 (1228)
T KOG0055|consen 983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSI-----RAGQTVALVGP-----SGSGKSTVISLLERFYDP---DAGKVKI 1049 (1228)
T ss_pred cceeEEEEeeeEeeCCCCCCchhhcCCcEEe-----cCCCEEEEECC-----CCCCHHHHHHHHHHhcCC---CCCeEEE
Confidence 356779999999999755 378999999999 56666666655 599999999999999998 5999999
Q ss_pred CCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHH-----HHHHHHHHHhCCCcccCCccC
Q psy2519 92 NGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-----ALINSLLIELGLMNSQHTRIG 162 (622)
Q Consensus 92 ~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~v~ 162 (622)
||+|+++ .+|+++|.|.|+|.||.. |++|||.|+. .+ .+..|.. +.+.+.+ .+|++..|+.+|
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~-~~----vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS-EE----VSEEEIIEAAKLANAHNFI--SSLPQGYDTRVG 1121 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC-CC----CCHHHHHHHHHHhhhHHHH--hcCcCcccCccC
Confidence 9999976 389999999999999876 9999999982 11 2323222 1222332 267889999999
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ +...||||||||++|||||+.||+||||||-||+||+.+.+.+.+.|.+.. .|+|.|++.|.++ ..+-||.
T Consensus 1122 e----rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS--TIqnaD~ 1193 (1228)
T KOG0055|consen 1122 E----RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS--TIQNADV 1193 (1228)
T ss_pred c----ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh--hhhcCCE
Confidence 7 234599999999999999999999999999999999999999999999986 5899999999973 4578999
Q ss_pred eeeecCCceEEecChHHHHH
Q psy2519 243 IILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~~ 262 (622)
|+++++|+|++.|+.++++.
T Consensus 1194 I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1194 IAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEEECCEEEecccHHHHHh
Confidence 99999999999999998874
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.1e-35 Score=328.66 Aligned_cols=209 Identities=23% Similarity=0.261 Sum_probs=174.5
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+++++||+++| | ++++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.+++.
T Consensus 6 ~l~i~~l~~~y--~~~~~il~~vs~~i-----~~Ge~~~iiG~N-----GsGKSTLlk~i~G~~~p---~~G~i~~~~~- 69 (556)
T PRK11819 6 IYTMNRVSKVV--PPKKQILKDISLSF-----FPGAKIGVLGLN-----GAGKSTLLRIMAGVDKE---FEGEARPAPG- 69 (556)
T ss_pred EEEEeeEEEEe--CCCCeeeeCceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEecCC-
Confidence 57899999997 5 578999999999 677788888887 89999999999999998 5899999752
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHc-C-------------CCcc--cc-----------------HHHHHH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL-K-------------LDRR--VK-----------------AYQRIA 142 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l-~-------------~~~~--~~-----------------~~~~~~ 142 (622)
..+|||+|++.+++.+||.||+.++... . .... .. ..+..+
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 4699999999999999999999875320 0 0000 00 001245
Q ss_pred HHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q psy2519 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 222 (622)
Q Consensus 143 ~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g 222 (622)
+++++++.+||.. .++.+++ |||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.
T Consensus 144 ~~~~~l~~~gl~~-~~~~~~~--------LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---- 210 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKVTK--------LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---- 210 (556)
T ss_pred HHHHHHHhCCCCc-ccCchhh--------cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC----
Confidence 6788999999964 6777776 99999999999999999999999999999999999999999999862
Q ss_pred CEEEEEeccCcHHHHhhccceeeecCCceE-EecChHHHH
Q psy2519 223 KTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAAL 261 (622)
Q Consensus 223 ~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 261 (622)
.|||++||++ +.+.+.||+|++|++|+++ +.|+.++..
T Consensus 211 ~tviiisHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 211 GTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred CeEEEEeCCH-HHHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 4999999996 6888999999999999986 888887643
No 315
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=297.47 Aligned_cols=228 Identities=18% Similarity=0.253 Sum_probs=195.0
Q ss_pred CCcccCCccccccc--cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEE
Q psy2519 16 NNEEVPNVDFSEIV--GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRV 91 (622)
Q Consensus 16 ~~~~~~~~~~~~~~--g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~ 91 (622)
..++++|++..+.. |.+++++++|+.+ .+|+...++|. ||||||-..+.+.|+++.. ...+|+|.+
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i-----~~GEtlAlVGE-----SGSGKSvTa~sim~LLp~~~~~~~sg~i~f 74 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDI-----EAGETLALVGE-----SGSGKSVTALSILGLLPSPAAAHPSGSILF 74 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeee-----cCCCEEEEEec-----CCCCccHHHHHHHHhcCCCcccCccceeEE
Confidence 35688999988753 3588999999999 67777777766 4899999999999999752 346899999
Q ss_pred CCEecCc----c----ccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCcc
Q psy2519 92 NGKPVEG----K----FRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 161 (622)
Q Consensus 92 ~G~~~~~----~----~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 161 (622)
+|+++-. . ...+|+++||++ .|.|-.|+.+.+.-..+++. ++++++.++++.++|+.+|+.+...+.-
T Consensus 75 ~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hr--g~~~~~Ar~r~lelL~~VgI~~p~~rl~ 152 (534)
T COG4172 75 DGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHR--GLSRAAARARALELLELVGIPEPEKRLD 152 (534)
T ss_pred cChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 9999743 1 236899999998 58999999999887766653 4577788899999999999976543331
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
.+|++ |||||||||.||+||+.+|++|+.||||++||...+.+|+++|++|.++.|+.++++|||. .-+.+++|
T Consensus 153 --~yPHe---LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~AD 226 (534)
T COG4172 153 --AYPHE---LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFAD 226 (534)
T ss_pred --hCCcc---cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhh
Confidence 23777 9999999999999999999999999999999999999999999999998999999999996 68999999
Q ss_pred ceeeecCCceEEecChHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~ 261 (622)
||++|.+|++++.|+.++++
T Consensus 227 rV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 227 RVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred hEEEEeccEEeecCcHHHHh
Confidence 99999999999999999876
No 316
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.4e-34 Score=275.67 Aligned_cols=157 Identities=27% Similarity=0.386 Sum_probs=140.4
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ ++|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~vl~~i~~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRF--GGVKALDGVSLSV-----RRGEVHALLGEN-----GAGKSTLMKILSGLYKP---DSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEE--CCeEEEeeeEEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCEECC
Confidence 3678999997 4567999999999 677788888776 89999999999999998 5899999999875
Q ss_pred c-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 98 G-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 98 ~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
. ..++.+||++| |
T Consensus 66 ~~~~~~~~~~~i~~~~q--------------------------------------------------------------L 83 (163)
T cd03216 66 FASPRDARRAGIAMVYQ--------------------------------------------------------------L 83 (163)
T ss_pred cCCHHHHHhcCeEEEEe--------------------------------------------------------------c
Confidence 3 13567888888 7
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|.|+|++||++ +++.+.||++++|++|+++
T Consensus 84 S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRL-DEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 589999999996 5788899999999999987
Q ss_pred E
Q psy2519 253 F 253 (622)
Q Consensus 253 ~ 253 (622)
+
T Consensus 162 ~ 162 (163)
T cd03216 162 G 162 (163)
T ss_pred e
Confidence 5
No 317
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.6e-35 Score=361.55 Aligned_cols=215 Identities=19% Similarity=0.192 Sum_probs=181.2
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|..+..++|+++|+++ ++|+++.|+|++ |||||||+++|.|+.+| .+|+|.+||.|
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I-----~~GekVaIVGrS-----GSGKSTLl~lL~rl~~p---~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEI-----SPSEKVGIVGRT-----GAGKSSMLNALFRIVEL---ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCcCCC---CCceEEECCEe
Confidence 468999999999545467999999999 788888988776 89999999999999999 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~~ 164 (622)
+.. .+|+++|+|||++.+|+. |++|||..+.. .++ +.+.++++..++ ++..|+.+++
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~------~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge- 1370 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE------HND----ADLWESLERAHLKDVIRRNSLGLDAEVSE- 1370 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCC------CCH----HHHHHHHHHcCcHHHHHhCccccCccccC-
Confidence 875 589999999999999987 99999976421 122 224455555544 3456777765
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+++|.+ +.+ .-||||+
T Consensus 1371 ---~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL-~tI-~~~DrIl 1443 (1622)
T PLN03130 1371 ---AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRL-NTI-IDCDRIL 1443 (1622)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCCh-HHH-HhCCEEE
Confidence 123599999999999999999999999999999999999999999999985 479999999997 345 5699999
Q ss_pred eecCCceEEecChHHHHH
Q psy2519 245 LLADSRTAFIGSKDAALA 262 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~~ 262 (622)
+|++|++++.|+++++++
T Consensus 1444 VLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1444 VLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EEECCEEEEeCCHHHHHh
Confidence 999999999999999863
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=325.75 Aligned_cols=203 Identities=21% Similarity=0.329 Sum_probs=173.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+
T Consensus 318 ~~l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~l~G~N-----GsGKSTLl~~i~G~~~p---~~G~i~~~~~- 381 (530)
T PRK15064 318 NALEVENLTKGF--DNGPLFKNLNLLL-----EAGERLAIIGEN-----GVGKTTLLRTLVGELEP---DSGTVKWSEN- 381 (530)
T ss_pred ceEEEEeeEEee--CCceeecCcEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCc-
Confidence 368899999986 5667999999999 678888888887 89999999999999998 4899999874
Q ss_pred cCccccccEEEEecCCC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCcccc
Q psy2519 96 VEGKFRSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gL 172 (622)
+.+|||+|++. +++.+||.|++.+... . . ..+++++++++.+|+. +..++.+++ |
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~--------L 439 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ---E---G--DDEQAVRGTLGRLLFSQDDIKKSVKV--------L 439 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhcc---C---C--ccHHHHHHHHHHcCCChhHhcCcccc--------c
Confidence 46999999863 6678999999865311 1 1 1134578899999994 677888777 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+ +.+.++||++++|++|+++
T Consensus 440 SgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 440 SGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDR-EFVSSLATRIIEITPDGVV 514 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCH-HHHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999876 34999999996 6888999999999999998
Q ss_pred -EecChHHHH
Q psy2519 253 -FIGSKDAAL 261 (622)
Q Consensus 253 -~~G~~~~~~ 261 (622)
+.|+++++.
T Consensus 515 ~~~g~~~~~~ 524 (530)
T PRK15064 515 DFSGTYEEYL 524 (530)
T ss_pred EcCCCHHHHH
Confidence 889888654
No 319
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.4e-35 Score=362.38 Aligned_cols=214 Identities=20% Similarity=0.201 Sum_probs=180.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|..+..++|+|+|+++ ++|+++.++|++ |||||||+++|.|+.+| .+|+|.+||.|
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I-----~~GekvaIVG~S-----GSGKSTL~~lL~rl~~p---~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFV-----SPSEKVGVVGRT-----GAGKSSMLNALFRIVEL---EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCcC---CCceEEECCEE
Confidence 468999999999555567999999999 788888888775 89999999999999999 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~~ 164 (622)
+.. .+|++++||||++.+|+. |++|||..+. ..++ +.+.++++..++. +..|+.+++
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e- 1367 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSE- 1367 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecC-
Confidence 865 489999999999999986 9999997642 1122 2344556665553 345666665
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+++|.+ +.+ .-||||+
T Consensus 1368 ---~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl-~ti-~~~DrIl 1440 (1495)
T PLN03232 1368 ---GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRL-NTI-IDCDKIL 1440 (1495)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCH-HHH-HhCCEEE
Confidence 224599999999999999999999999999999999999999999999975 479999999997 445 5699999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|++++++
T Consensus 1441 VL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1441 VLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999999886
No 320
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.7e-35 Score=287.23 Aligned_cols=209 Identities=22% Similarity=0.303 Sum_probs=180.9
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc---cccccEEEEe
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG---KFRSACGFMY 108 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~---~~r~~igyV~ 108 (622)
.+++.++|+++ .+|+.+..+|+| ||||||+||+|+|++.| .+|.|.++|.+.-+ ++-+.+++|+
T Consensus 37 ~~AVqdisf~I-----P~G~ivgflGaN-----GAGKSTtLKmLTGll~p---~~G~v~V~G~~Pf~~~~~~~~~~~~v~ 103 (325)
T COG4586 37 IEAVQDISFEI-----PKGEIVGFLGAN-----GAGKSTTLKMLTGLLLP---TSGKVRVNGKDPFRRREEYLRSIGLVM 103 (325)
T ss_pred hhhhheeeeec-----CCCcEEEEEcCC-----CCcchhhHHHHhCcccc---CCCeEEecCcCcchhHHHHHHHHHHHh
Confidence 45788899988 566677777776 89999999999999999 59999999998644 3556788886
Q ss_pred -cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHh
Q psy2519 109 -QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187 (622)
Q Consensus 109 -Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~ 187 (622)
|...+.-.+-+.|.+..-...+. ++.++-+++.+.+.+.++|++..+.++.. ||-|||.|+.+|.+|+
T Consensus 104 gqk~ql~Wdlp~~ds~~v~~~Iy~---Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~--------LSlGqRmraeLaaaLL 172 (325)
T COG4586 104 GQKLQLWWDLPALDSLEVLKLIYE---IPDDEFAERLDFLTEILDLEGFLKWPVRK--------LSLGQRMRAELAAALL 172 (325)
T ss_pred hhhheeeeechhhhhHHHHHHHHh---CCHHHHHHHHHHHHHHhcchhhhhhhhhh--------ccchHHHHHHHHHHhc
Confidence 44567777778888877655542 45666778899999999999988888777 9999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHHHH
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 265 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~~ 265 (622)
++|+||||||||-|||..++..|.+.+++.+++++.||+++||+. +.+.++||||++++.|+++|+|+.+++.+-|.
T Consensus 173 h~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 173 HPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999999999999999999999998999999999996 68999999999999999999999998876553
No 321
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1e-34 Score=327.65 Aligned_cols=205 Identities=19% Similarity=0.237 Sum_probs=168.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+|+ ++.++++++|+++ ++|+.+.++|++ |||||||+++|+|+.+| .+|+|.+||+++
T Consensus 322 ~i~~~~v~f~y~-~~~~~l~~i~~~i-----~~G~~~aivG~s-----GsGKSTL~~ll~g~~~~---~~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQ-DNGFSVGPINLTI-----KRGELLFLIGGN-----GSGKSTLAMLLTGLYQP---QSGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeC-CCCeEEecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCEEC
Confidence 578999999985 4467999999999 678888888776 89999999999999999 599999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.. .+|++++||+|++.+++. |++|| . .. ...+.+++.++.+++.+..+..-+. .....|
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~---~~G~~L 450 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGR---ISNLKL 450 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHHH-hhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccC---CCCCCC
Confidence 64 478899999999887765 78777 1 01 1234567888999887644321110 012349
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||||+.+|++|+|||||++||+.+...+.+.+.+..++.|+|+|++||++ +..+.||++++|++|+++
T Consensus 451 SgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~ 528 (547)
T PRK10522 451 SKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLS 528 (547)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999877543589999999997 456789999999999998
Q ss_pred Ee
Q psy2519 253 FI 254 (622)
Q Consensus 253 ~~ 254 (622)
..
T Consensus 529 e~ 530 (547)
T PRK10522 529 EL 530 (547)
T ss_pred Ee
Confidence 76
No 322
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=9.5e-35 Score=358.23 Aligned_cols=214 Identities=22% Similarity=0.265 Sum_probs=181.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|..+..++|+|+|+++ ++|+++.|+|++ |||||||+++|.|+.+| .+|+|.+||.|
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I-----~~GekVaIVGrT-----GSGKSTLl~lLlrl~~p---~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRI-----APREKVGIVGRT-----GSGKSTLLLTFMRMVEV---CGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEE
Confidence 468899999999655567999999999 788888888776 89999999999999999 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~~ 164 (622)
+.. ++|+.+|||||++.+|+. ||+|||.... ..+. +.+.++++..+|.+ ..|+.+++
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge- 1441 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLE- 1441 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccC-
Confidence 875 589999999999999976 9999995421 1122 34567777777654 35667765
Q ss_pred CCCCccccChHHHHHHHHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTD-PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~-P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. .++|+|+++|.+ +....||+|
T Consensus 1442 ---~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl--~ti~~~DrI 1514 (1560)
T PTZ00243 1442 ---GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRL--HTVAQYDKI 1514 (1560)
T ss_pred ---CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccH--HHHHhCCEE
Confidence 2245999999999999999996 89999999999999999999999999875 479999999997 445689999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|++++.|++++++
T Consensus 1515 lVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1515 IVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999999886
No 323
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.3e-35 Score=328.94 Aligned_cols=199 Identities=27% Similarity=0.367 Sum_probs=164.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+|+.++.++++++|+++ ++|+.+.++|++ |||||||+|+|+|+.+| .+|+|.+||+++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i-----~~G~~~~ivG~s-----GsGKSTL~~ll~g~~~~---~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTV-----PPGERVALVGPS-----GAGKSTLLNLLLGFVDP---TEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEeh
Confidence 58899999998644457999999999 678888888775 89999999999999999 589999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCCcC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSSS 165 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~~~ 165 (622)
.+ ++|+.+|||+|++.+++. |++||+.++... .++ +.+.++++..++.+ ..|+.+++
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~-----~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-- 454 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARPD-----ASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-- 454 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCCC-----CCH----HHHHHHHHHcCcHHHHHhCcccccchhcc--
Confidence 64 478999999999998875 999999886321 121 23445566666543 34666665
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
....||||||||++|||||+.+|++++|||||++||+.+..++.+.++++. .++|+|++||++ +. .+.||+|++
T Consensus 455 --~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~-~~-~~~~d~i~~ 528 (529)
T TIGR02857 455 --GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRL-AL-AERADRIVV 528 (529)
T ss_pred --ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCH-HH-HHhCCEEEe
Confidence 123499999999999999999999999999999999999999999999985 479999999997 34 478999987
Q ss_pred e
Q psy2519 246 L 246 (622)
Q Consensus 246 L 246 (622)
|
T Consensus 529 l 529 (529)
T TIGR02857 529 L 529 (529)
T ss_pred C
Confidence 5
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.9e-34 Score=325.54 Aligned_cols=211 Identities=23% Similarity=0.237 Sum_probs=172.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.+++
T Consensus 4 ~i~~~nls~~~~-~~~~il~~is~~i-----~~Ge~~~liG~N-----GsGKSTLl~~i~G~~~p---~~G~i~~~~--- 66 (552)
T TIGR03719 4 IYTMNRVSKVVP-PKKEILKDISLSF-----FPGAKIGVLGLN-----GAGKSTLLRIMAGVDKE---FNGEARPAP--- 66 (552)
T ss_pred EEEEeeEEEecC-CCCeeecCceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEecC---
Confidence 578999999973 2567999999999 677788888887 89999999999999998 589999975
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHc-C------------CCccccH--------------------HHHHHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL-K------------LDRRVKA--------------------YQRIAL 143 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l-~------------~~~~~~~--------------------~~~~~~ 143 (622)
+..+|||+|++.+++.+||+||+.++... + ....... .+...+
T Consensus 67 ----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (552)
T TIGR03719 67 ----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRK 142 (552)
T ss_pred ----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 24699999999999999999999875321 0 0000000 001245
Q ss_pred HHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q psy2519 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 223 (622)
Q Consensus 144 v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~ 223 (622)
++++++.+|+.. .++.+++ |||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.
T Consensus 143 ~~~~l~~~~l~~-~~~~~~~--------LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~ 209 (552)
T TIGR03719 143 LEIAMDALRCPP-WDADVTK--------LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PG 209 (552)
T ss_pred HHHHHhhCCCCc-ccCchhh--------cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CC
Confidence 677888888854 5777666 9999999999999999999999999999999999999999999875 34
Q ss_pred EEEEEeccCcHHHHhhccceeeecCCceE-EecChHHHHH
Q psy2519 224 TVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAALA 262 (622)
Q Consensus 224 tvi~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 262 (622)
|||++||++ +.+..+||++++|++|+++ +.|+.++..+
T Consensus 210 tvIiisHd~-~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 210 TVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred eEEEEeCCH-HHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 999999996 6888999999999999976 7898886543
No 325
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6e-34 Score=294.17 Aligned_cols=206 Identities=24% Similarity=0.319 Sum_probs=160.6
Q ss_pred EEeecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEE
Q psy2519 11 VILFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIR 90 (622)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~ 90 (622)
-..-++.++++|+++. ..++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.
T Consensus 33 ~~~~~~~l~i~nls~~----~~~vL~~vs~~i-----~~Ge~~~liG~N-----GsGKSTLl~~I~Gl~~p---~~G~I~ 95 (282)
T cd03291 33 HSSDDNNLFFSNLCLV----GAPVLKNINLKI-----EKGEMLAITGST-----GSGKTSLLMLILGELEP---SEGKIK 95 (282)
T ss_pred cCCCCCeEEEEEEEEe----cccceeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEE
Confidence 3445566889999984 256999999999 677888888887 89999999999999998 489999
Q ss_pred ECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc-------CCccCC
Q psy2519 91 VNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-------HTRIGS 163 (622)
Q Consensus 91 ~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v~~ 163 (622)
++| .++|++|++.+++. ||+||+.+..... .. ++.+.++.+++.+.. ++.++.
T Consensus 96 i~g---------~i~yv~q~~~l~~~-tv~enl~~~~~~~------~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~ 155 (282)
T cd03291 96 HSG---------RISFSSQFSWIMPG-TIKENIIFGVSYD------EY----RYKSVVKACQLEEDITKFPEKDNTVLGE 155 (282)
T ss_pred ECC---------EEEEEeCccccccc-CHHHHhhcccccC------HH----HHHHHHHHhCCHHHHHhccccccceecC
Confidence 988 38999999888875 9999998753211 10 112233333332211 112211
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM-RELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l-~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
..+.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.+ ++++ .+.|||++||++ ..+ ..||+
T Consensus 156 ----~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~-~~~-~~~d~ 227 (282)
T cd03291 156 ----GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADK 227 (282)
T ss_pred ----CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCCh-HHH-HhCCE
Confidence 11239999999999999999999999999999999999999999865 5654 478999999997 455 58999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
+++|++|++++.|+++++.
T Consensus 228 i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 228 ILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
No 326
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=5.6e-34 Score=283.35 Aligned_cols=193 Identities=18% Similarity=0.166 Sum_probs=158.9
Q ss_pred eeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEE-ECCEecCccccccEEEEecCCC
Q psy2519 34 VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIR-VNGKPVEGKFRSACGFMYQHDL 112 (622)
Q Consensus 34 ~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~-~~G~~~~~~~r~~igyV~Q~~~ 112 (622)
+++++|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|. ++|..+. +.|++.
T Consensus 2 vl~~vs~~i-----~~Ge~~~l~G~N-----GsGKSTLlk~i~Gl~~~---~sG~i~~~~~~~~~---------~~~~~~ 59 (213)
T PRK15177 2 VLDKTDFVM-----GYHEHIGILAAP-----GSGKTTLTRLLCGLDAP---DEGDFIGLRGDALP---------LGANSF 59 (213)
T ss_pred eeeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCccC---CCCCEEEecCceec---------cccccc
Confidence 689999999 677788888777 89999999999999998 589997 7775431 234567
Q ss_pred CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCe
Q psy2519 113 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192 (622)
Q Consensus 113 l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~l 192 (622)
++|.+|++||+.+....+. ....+. .+.+.+.++|.+..++.+++ ||||||||++|||+|+.+|++
T Consensus 60 l~~~ltv~enl~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~~~--------lS~G~~qrv~la~al~~~p~l 125 (213)
T PRK15177 60 ILPGLTGEENARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRVSE--------YSVTMKTHLAFAINLLLPCRL 125 (213)
T ss_pred cCCcCcHHHHHHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchHhh--------cCHHHHHHHHHHHHHhcCCCE
Confidence 8999999999999765432 122221 22344567888778888777 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHHHH
Q psy2519 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 265 (622)
Q Consensus 193 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~~ 265 (622)
+||||||+++|+.++..+.+.+.+..+ +.|+|++||++ .++.++||++++|++|++++.|+.+++.+++.
T Consensus 126 lllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 126 YIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred EEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 999999999999999999998876544 46899999997 67888999999999999999999998876654
No 327
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=7.1e-35 Score=327.89 Aligned_cols=187 Identities=27% Similarity=0.351 Sum_probs=155.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+|+|+ ++.++|+++|+++ ++|++++++|++ |||||||+|+|+|+.+| .+|+|.+||++
T Consensus 333 ~~I~~~~vsf~Y~-~~~~vL~~isl~i-----~~G~~vaIvG~S-----GsGKSTLl~lL~g~~~p---~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYP-GSPPVLDGVSLDL-----PPGERVAILGPS-----GSGKSTLLMLLTGLLDP---LQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecC-CCCceeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEE
Confidence 4588999999984 3356999999999 788888888775 89999999999999999 59999999998
Q ss_pred cCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCCcC
Q psy2519 96 VEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSS 165 (622)
Q Consensus 96 ~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~~~ 165 (622)
+.+ ++|+.+|||+|++.+++. |++|||.++.. ..++ +++.++++..++. +..|+.+|+
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-- 466 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DATD----EELWAALERVGLADWLRSLPDGLDTVLGE-- 466 (529)
T ss_pred hhhHHHHHHhheEEEccCcccccc-cHHHHHhccCC-----CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcc--
Confidence 864 578899999999998877 99999998631 1122 2344556655553 445777776
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
....||||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. .++|+|++||++
T Consensus 467 --~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 467 --GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred --ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 224599999999999999999999999999999999999999999999875 479999999974
No 328
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.7e-34 Score=356.57 Aligned_cols=215 Identities=18% Similarity=0.164 Sum_probs=181.3
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|+.+..++|+++|+++ ++|+++.++|++ |||||||+++|.|+.+| .+|+|.+||.|
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I-----~~GekiaIVGrT-----GsGKSTL~~lL~rl~~~---~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTI-----HGGEKVGIVGRT-----GAGKSSLTLGLFRINES---AEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCccC---CCCeEEECCEE
Confidence 568999999999655567999999999 788888888776 89999999999999998 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~~ 164 (622)
+.. .+|+++++|||++.+|+. |++|||.... ..+++ .+.++++..++. +..|+.+++
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e- 1417 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE- 1417 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-
Confidence 975 489999999999999987 9999996321 11222 345566666654 345777765
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|+||+||||||+||+.+...|.+.|++.. .++|+|+++|++ +. ..-+|||+
T Consensus 1418 ---~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl-~t-i~~~DrIl 1490 (1522)
T TIGR00957 1418 ---GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRL-NT-IMDYTRVI 1490 (1522)
T ss_pred ---CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HH-HHhCCEEE
Confidence 124599999999999999999999999999999999999999999999875 479999999997 34 45799999
Q ss_pred eecCCceEEecChHHHHH
Q psy2519 245 LLADSRTAFIGSKDAALA 262 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~~ 262 (622)
+|++|++++.|+++++++
T Consensus 1491 Vld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1491 VLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEECCEEEEECCHHHHHh
Confidence 999999999999998863
No 329
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4.5e-34 Score=273.04 Aligned_cols=163 Identities=25% Similarity=0.311 Sum_probs=140.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|. ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|.
T Consensus 1 i~~~~~~~~~~-~~~~~l~~i~l~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~~~--- 63 (166)
T cd03223 1 IELENLSLATP-DGRVLLKDLSFEI-----KPGDRLLITGPS-----GTGKSSLFRALAGLWPW---GSGRIGMPEG--- 63 (166)
T ss_pred CEEEEEEEEcC-CCCeeeecCeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCC---
Confidence 35789999873 3357999999999 677788888777 89999999999999998 4899999874
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
+.++|++|++.++ ..||+||+.+. .... ||||||
T Consensus 64 ----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~~~~--------LS~G~~ 97 (166)
T cd03223 64 ----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------WDDV--------LSGGEQ 97 (166)
T ss_pred ----ceEEEECCCCccc-cccHHHHhhcc---------------------------------CCCC--------CCHHHH
Confidence 5799999998765 67999998653 1223 999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||++|||+|+.+|++++|||||+|||+.++..+.+.++++ +.|+|++||++ +. .+.||++++|++|
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~-~~-~~~~d~i~~l~~~ 163 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRP-SL-WKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCCh-hH-HhhCCEEEEEcCC
Confidence 9999999999999999999999999999999999999875 58999999997 34 5799999999865
No 330
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=272.31 Aligned_cols=231 Identities=23% Similarity=0.261 Sum_probs=198.0
Q ss_pred CcccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+++++||..+. ++ +++|++|||++ ++|+.-+|.||| |||||||.++|+|.-.... ++|+|.++|++
T Consensus 3 ~L~I~dLhv~v--~~~keILkgvnL~v-----~~GEvhaiMGPN-----GsGKSTLa~~i~G~p~Y~V-t~G~I~~~Ged 69 (251)
T COG0396 3 MLEIKDLHVEV--EGKKEILKGVNLTV-----KEGEVHAIMGPN-----GSGKSTLAYTIMGHPKYEV-TEGEILFDGED 69 (251)
T ss_pred eeEEeeeEEEe--cCchhhhcCcceeE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCceE-ecceEEECCcc
Confidence 57889999985 44 58999999999 677777777777 8999999999999876543 79999999999
Q ss_pred cCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCc
Q psy2519 96 VEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQK 169 (622)
Q Consensus 96 ~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~ 169 (622)
+.. ..|..+..-||.|.=+|..|+.+-|..+............+..+++++.++.+++.+ .+++.+..
T Consensus 70 I~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~------ 143 (251)
T COG0396 70 ILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE------ 143 (251)
T ss_pred cccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC------
Confidence 865 368889999999999999999999988765532211012345667889999999976 67887766
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc--cceeeec
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF--DKIILLA 247 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~--D~v~~L~ 247 (622)
|+|||||||..|+..++.+|++.+||||-||||..+-..|.+.+++++. .|.+++++||.. ++.+.. |++.+|.
T Consensus 144 -GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy~--rll~~i~pD~vhvl~ 219 (251)
T COG0396 144 -GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHYQ--RLLDYIKPDKVHVLY 219 (251)
T ss_pred -CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecHH--HHHhhcCCCEEEEEE
Confidence 6999999999999999999999999999999999999999999999997 699999999984 677776 9999999
Q ss_pred CCceEEecChHHHHHHHHhCCCCC
Q psy2519 248 DSRTAFIGSKDAALAFLESQGYPC 271 (622)
Q Consensus 248 ~G~iv~~G~~~~~~~~~~~~g~~~ 271 (622)
+|+|+..|.+ ++.+.++..||.|
T Consensus 220 ~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 220 DGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred CCEEEecCCH-HHHHHHHHhchHH
Confidence 9999999999 8889999888864
No 331
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.5e-34 Score=323.53 Aligned_cols=208 Identities=20% Similarity=0.253 Sum_probs=168.2
Q ss_pred CCcccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 16 NNEEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
..++++||+|+|+.. +.++|+++|+++ ++|+.+.++|++ |||||||+++|+|+.+| .+|+|.+|
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i-----~~G~~~aivG~s-----GsGKSTl~~ll~g~~~p---~~G~i~~~ 402 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRI-----AQGDIVFIVGEN-----GCGKSTLAKLFCGLYIP---QEGEILLD 402 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEEC
Confidence 458899999998432 236999999999 678888888776 89999999999999999 59999999
Q ss_pred CEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 93 GKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 93 G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
|.++.. .+|+.++||+|++.+++. |++||. . + +..+++++++++.+++.+..+..... -..
T Consensus 403 g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~------~-~-----~~~~~~~~~~~~~~~l~~~~~~lp~g--~~t 467 (555)
T TIGR01194 403 GAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDE------G-E-----HASLDNAQQYLQRLEIADKVKIEDGG--FST 467 (555)
T ss_pred CEECCCCCHHHHHhhCcEEccChhhhhh-hhhccc------c-c-----chhHHHHHHHHHHcCCchhhcccccc--cCC
Confidence 999865 478899999999888765 788883 1 0 11234567889999987765443211 011
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR-ELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~-~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
...||||||||++|||||+.+|++|+|||||++||+.+..++.+.+. ++.. .|+|+|++||++ +..+.||+|++|+
T Consensus 468 ~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~--~~~~~~d~i~~l~ 544 (555)
T TIGR01194 468 TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDD--QYFELADQIIKLA 544 (555)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccH--HHHHhCCEEEEEE
Confidence 23499999999999999999999999999999999999999998664 4544 689999999997 3567899999999
Q ss_pred CCceEEe
Q psy2519 248 DSRTAFI 254 (622)
Q Consensus 248 ~G~iv~~ 254 (622)
+|+++..
T Consensus 545 ~G~i~~~ 551 (555)
T TIGR01194 545 AGCIVKD 551 (555)
T ss_pred CCEEEEe
Confidence 9999853
No 332
>KOG0059|consensus
Probab=100.00 E-value=2.3e-34 Score=338.60 Aligned_cols=227 Identities=23% Similarity=0.300 Sum_probs=206.1
Q ss_pred EEeecCCcccCCcccccccccee-eeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 11 VILFKNNEEVPNVDFSEIVGSVQ-VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~-~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
...+...+.++|+++.| |+.. +++++++.| ++++.+.++|+| ||||||++|+|+|..+| ++|++
T Consensus 558 ~~~~~~~~~~~~L~k~y--~~~~~Av~~ls~~V-----~~gecfgLLG~N-----GAGKtT~f~mltG~~~~---t~G~a 622 (885)
T KOG0059|consen 558 RSSYSSALVLNNLSKVY--GGKDGAVRGLSFAV-----PPGECFGLLGVN-----GAGKTTTFKMLTGETKP---TSGEA 622 (885)
T ss_pred cccccceEEEcceeeee--cchhhhhcceEEEe-----cCCceEEEecCC-----CCCchhhHHHHhCCccC---CcceE
Confidence 34556788899999997 4443 899999999 789999999888 79999999999999999 59999
Q ss_pred EECCEecCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 90 RVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 90 ~~~G~~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
.++|.++.. +.++.+||+||+|.+.+.+|.+|++.+.+++++ .+..+.++.++++++.+||.+.+++.++.
T Consensus 623 ~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~~- 698 (885)
T KOG0059|consen 623 LIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVRT- 698 (885)
T ss_pred EEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchhh-
Confidence 999999864 278999999999999999999999999999985 34455667799999999999999999988
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
+|||+|||+++|.||+.+|++++|||||+|+||.++++++++++++.+ +|+.||+|||.+ +|.+.+|||+.
T Consensus 699 -------ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsM-eE~EaLCtR~a 769 (885)
T KOG0059|consen 699 -------YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSM-EEAEALCTRTA 769 (885)
T ss_pred -------CCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCH-HHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999998 677999999995 79999999999
Q ss_pred eecCCceEEecChHHHHHHHH
Q psy2519 245 LLADSRTAFIGSKDAALAFLE 265 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~~~~~ 265 (622)
+|.+|++...|+++++...|.
T Consensus 770 Imv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 770 IMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred eeecCeeEEecChHHHHhhcC
Confidence 999999999999999986654
No 333
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.1e-34 Score=320.46 Aligned_cols=198 Identities=18% Similarity=0.173 Sum_probs=170.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|++++| ++. .|+++|+++ .+|+.+.++|+| |||||||+++|+|+++| .+|+|.++
T Consensus 340 ~l~~~~ls~~~--~~~-~l~~~s~~i-----~~Geiv~l~G~N-----GsGKSTLlk~L~Gl~~p---~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKL--GDF-SLEVEGGEI-----YEGEVIGIVGPN-----GIGKTTFAKLLAGVLKP---DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEE--CCE-EEEecceEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEEe----
Confidence 47889999986 444 489999998 677888888887 89999999999999998 48999986
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
..+||++|+..+.+.+||+|++.+..... .. ...++++++.++|.+..++.+.+ |||||
T Consensus 400 -----~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~~~--------LSGGe 458 (590)
T PRK13409 400 -----LKISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNVKD--------LSGGE 458 (590)
T ss_pred -----eeEEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCccc--------CCHHH
Confidence 25999999988889999999998753211 11 12467899999999888888777 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecC
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
||||+||++|+.+|++|||||||+|||+.++.++.+.|++++++.|.|||++|||+ .++..+|||+++|+ |++...|.
T Consensus 459 ~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 459 LQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeee
Confidence 99999999999999999999999999999999999999999876689999999996 68888999999995 58877766
Q ss_pred h
Q psy2519 257 K 257 (622)
Q Consensus 257 ~ 257 (622)
.
T Consensus 537 ~ 537 (590)
T PRK13409 537 A 537 (590)
T ss_pred c
Confidence 3
No 334
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.4e-34 Score=302.24 Aligned_cols=227 Identities=24% Similarity=0.327 Sum_probs=190.4
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..+.++++++.-+-.++++++++|+++ .+|+...|+|| ||||||||.|+|.|..+| .+|.|.+||.+
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l-----~~G~~lgIIGP-----SgSGKSTLaR~lvG~w~p---~~G~VRLDga~ 399 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFAL-----QAGEALGIIGP-----SGSGKSTLARLLVGIWPP---TSGSVRLDGAD 399 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEe-----cCCceEEEECC-----CCccHHHHHHHHHccccc---CCCcEEecchh
Confidence 456789999975445579999999999 67888888866 489999999999999999 59999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
+.. ++.++|||+||+-.||+. ||.|||.=......+.++-+..+.+.+.+++- .+.+-.|+.+|+ - ..+
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~--~--G~~ 472 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGE--G--GAT 472 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCC--C--CCC
Confidence 865 488999999999889887 99999954432222222222334445666664 567788999997 2 356
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||+++||||-.||.+++||||-++||......+.+.|.++++ +|.|+|+++|.| .+...+|+|++|++|++
T Consensus 473 LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKILVLQDGRI 549 (580)
T ss_pred CCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhcceeeeecCChH
Confidence 999999999999999999999999999999999999999999999987 799999999998 56788999999999999
Q ss_pred EEecChHHHHHHHH
Q psy2519 252 AFIGSKDAALAFLE 265 (622)
Q Consensus 252 v~~G~~~~~~~~~~ 265 (622)
-.+|+.+|++....
T Consensus 550 ~~FG~r~eVLa~~~ 563 (580)
T COG4618 550 AAFGPREEVLAKVL 563 (580)
T ss_pred HhcCCHHHHHHHhc
Confidence 99999999887654
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-33 Score=319.22 Aligned_cols=205 Identities=21% Similarity=0.224 Sum_probs=170.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.+++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~l~G~N-----GsGKSTLl~~i~G~~~p---~~G~i~~~~~- 386 (556)
T PRK11819 323 KVIEAENLSKSF--GDRLLIDDLSFSL-----PPGGIVGIIGPN-----GAGKSTLFKMITGQEQP---DSGTIKIGET- 386 (556)
T ss_pred eEEEEEeEEEEE--CCeeeecceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCc-
Confidence 368899999986 6677999999999 678888888887 89999999999999998 5899999542
Q ss_pred cCccccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccC
Q psy2519 96 VEGKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLS 173 (622)
..+|||+|+. .+++.+||.||+.+....... ... ...++++++.+|+.+ ..++.+++ ||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~~~~--------LS 447 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKKVGV--------LS 447 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCchhh--------CC
Confidence 2599999986 788999999999986533211 111 123457899999964 56888777 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC-CceE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTA 252 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~-G~iv 252 (622)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+ +++.++||++++|++ |++.
T Consensus 448 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 448 GGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---G-CAVVISHDR-WFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCH-HHHHHhCCEEEEEECCCeEE
Confidence 999999999999999999999999999999999999999999872 4 899999996 688899999999985 7876
Q ss_pred -EecChHHH
Q psy2519 253 -FIGSKDAA 260 (622)
Q Consensus 253 -~~G~~~~~ 260 (622)
+.|+.++.
T Consensus 523 ~~~g~~~~~ 531 (556)
T PRK11819 523 WFEGNFQEY 531 (556)
T ss_pred EecCCHHHH
Confidence 56766543
No 336
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.2e-33 Score=260.62 Aligned_cols=221 Identities=20% Similarity=0.265 Sum_probs=191.7
Q ss_pred CcccCCcccccccc-----c--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 17 NEEVPNVDFSEIVG-----S--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-----~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
.++|+|++|++.+. . ..+++-||+++ .++....+||.| |||||||.|+|+|..+| ++|+|
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL-----~~~QTlaiIG~N-----GSGKSTLakMlaGmi~P---TsG~i 70 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTL-----REGQTLAIIGEN-----GSGKSTLAKMLAGMIEP---TSGEI 70 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEe-----cCCcEEEEEccC-----CCcHhHHHHHHhcccCC---CCceE
Confidence 46899999987532 2 56789999999 456666777666 89999999999999999 59999
Q ss_pred EECCEecCc----cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-CcccCCccC
Q psy2519 90 RVNGKPVEG----KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIG 162 (622)
Q Consensus 90 ~~~G~~~~~----~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~ 162 (622)
++||+++.- ...++|-++|||+ .+.|.+.+-+-+..+.++.. ..+..++.+++-+.|..+|| .+.++-++.
T Consensus 71 l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T--~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~ 148 (267)
T COG4167 71 LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNT--DLEPEQRRKQIFETLRMVGLLPDHANYYPH 148 (267)
T ss_pred EECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcc--cCChHHHHHHHHHHHHHhccCccccccchh
Confidence 999999853 2457899999997 58899999988888776653 45667788899999999999 556777755
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
. ||-||||||++||||+.+|++++.||..++||...+.++.++..++.++.|.+-|.|+.+. .-+.+++|.
T Consensus 149 ~--------la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~ 219 (267)
T COG4167 149 M--------LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQ 219 (267)
T ss_pred h--------cCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhccc
Confidence 5 9999999999999999999999999999999999999999999999998999999999996 689999999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
|++|++|++++.|++.+++
T Consensus 220 viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 220 VLVMHEGEVVERGSTADVL 238 (267)
T ss_pred EEEEecCceeecCChhhhh
Confidence 9999999999999999775
No 337
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7.1e-34 Score=348.01 Aligned_cols=213 Identities=18% Similarity=0.300 Sum_probs=169.9
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE-CCE
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV-NGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~-~G~ 94 (622)
.++++||+|+|+.+ +.++|+++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.+ +|.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i-----~~Ge~vaIvG~S-----GsGKSTLl~lL~gl~~p---~~G~I~i~~g~ 448 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTL-----TEGKTYAFVGES-----GCGKSTILKLIERLYDP---TEGDIIINDSH 448 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHHhccC---CCCeEEEeCCc
Confidence 58899999998533 357999999999 678888888776 89999999999999999 5999999 567
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC----------C----cc----------------------
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL----------D----RR---------------------- 134 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~----------~----~~---------------------- 134 (622)
++.. .+|+.||||+|++.+++. ||+|||.++..... + ..
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 7753 368899999999999875 99999999631100 0 00
Q ss_pred ---c---------cHHHHHHHHHHHHHHhCCCc-------ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEE
Q psy2519 135 ---V---------KAYQRIALINSLLIELGLMN-------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 195 (622)
Q Consensus 135 ---~---------~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlL 195 (622)
. ......+.+.++++.+++.+ ..|+.++.. ...||||||||++|||||+.+|++|||
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~----g~~LSGGQkQRiaIARAll~~P~ILlL 603 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN----ASKLSGGQKQRISIARAIIRNPKILIL 603 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 00011245667777776643 345666651 234999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 196 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 196 DEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||++||+.+...+.+.|++++++.|+|+|+++|++ +.+ +.||+|++|++|
T Consensus 604 DEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrl-s~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 604 DEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRL-STI-RYANTIFVLSNR 655 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCH-HHH-HhCCEEEEEeCC
Confidence 9999999999999999999999764589999999997 455 789999999986
No 338
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-33 Score=288.05 Aligned_cols=199 Identities=20% Similarity=0.195 Sum_probs=164.5
Q ss_pred CCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEE---------
Q psy2519 21 PNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIR--------- 90 (622)
Q Consensus 21 ~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~--------- 90 (622)
+||+|+| ++ ..++++++ .+ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.
T Consensus 4 ~~~~~~y--~~~~~~l~~i~-~i-----~~Ge~~~IvG~n-----GsGKSTLlk~l~Gl~~p---~~G~I~~~~~~~~~~ 67 (255)
T cd03236 4 DEPVHRY--GPNSFKLHRLP-VP-----REGQVLGLVGPN-----GIGKSTALKILAGKLKP---NLGKFDDPPDWDEIL 67 (255)
T ss_pred cCcceee--cCcchhhhcCC-CC-----CCCCEEEEECCC-----CCCHHHHHHHHhCCcCC---CCceEeeccccchhh
Confidence 5788887 44 35889988 35 577788888877 89999999999999999 599996
Q ss_pred --ECCEecCc---c-c--cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccC
Q psy2519 91 --VNGKPVEG---K-F--RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 162 (622)
Q Consensus 91 --~~G~~~~~---~-~--r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~ 162 (622)
++|+++.. . . +..++|++|+..+++. ++.+++.+.. . ....++.+.++++.+||.+..++.+.
T Consensus 68 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~~ 138 (255)
T cd03236 68 DEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNID 138 (255)
T ss_pred hhccCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCChh
Confidence 88888743 1 1 1247999999888885 8888887642 1 12234567899999999888888766
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|+++++||||+|||+.++..+.+.|+++++ +|+|||++||++ +.+.++||+
T Consensus 139 ~--------LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~-~~~~~~ad~ 208 (255)
T cd03236 139 Q--------LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDL-AVLDYLSDY 208 (255)
T ss_pred h--------CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCE
Confidence 6 999999999999999999999999999999999999999999999987 589999999996 678789999
Q ss_pred eeeecCCceEEec
Q psy2519 243 IILLADSRTAFIG 255 (622)
Q Consensus 243 v~~L~~G~iv~~G 255 (622)
+++| +|++++.|
T Consensus 209 i~~l-~~~~~~~~ 220 (255)
T cd03236 209 IHCL-YGEPGAYG 220 (255)
T ss_pred EEEE-CCCCCcce
Confidence 9999 56676544
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.7e-33 Score=317.76 Aligned_cols=204 Identities=21% Similarity=0.239 Sum_probs=169.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.+++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.+++.
T Consensus 321 ~~l~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~l~G~N-----GsGKSTLl~~l~G~~~p---~~G~i~~~~~- 384 (552)
T TIGR03719 321 KVIEAENLSKGF--GDKLLIDDLSFKL-----PPGGIVGVIGPN-----GAGKSTLFRMITGQEQP---DSGTIKIGET- 384 (552)
T ss_pred eEEEEeeEEEEE--CCeeeeccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CCeEEEECCc-
Confidence 358899999986 6678999999999 677888888887 89999999999999998 5899999542
Q ss_pred cCccccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccC
Q psy2519 96 VEGKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLS 173 (622)
..+||++|++ .+++.+||.||+.++..... .... ..+++++++.+|+.+ ..++.+++ ||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~~--------LS 445 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKVGQ--------LS 445 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCchhh--------CC
Confidence 2599999986 58889999999998653221 1111 123557899999964 56888777 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC-CceE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTA 252 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~-G~iv 252 (622)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+ +.+.++||++++|++ |+++
T Consensus 446 gGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 446 GGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDR-WFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEE
Confidence 999999999999999999999999999999999999999999872 4 899999996 688899999999986 5876
Q ss_pred -EecChHH
Q psy2519 253 -FIGSKDA 259 (622)
Q Consensus 253 -~~G~~~~ 259 (622)
+.|+.++
T Consensus 521 ~~~g~~~~ 528 (552)
T TIGR03719 521 WFEGNYSE 528 (552)
T ss_pred EeCCCHHH
Confidence 5566543
No 340
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.1e-33 Score=348.62 Aligned_cols=213 Identities=18% Similarity=0.237 Sum_probs=181.0
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+++|..+..++|+++|+++ ++|+++.|+|++ |||||||+++|.|+.++ +|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I-----~~GekvaIvGrS-----GsGKSTLl~lL~rl~~~----~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSV-----EGGQRVGLLGRT-----GSGKSTLLSALLRLLST----EGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhhhcCC----CcEEEECCEE
Confidence 458899999999666678999999999 788888888776 89999999999999853 8999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~~ 164 (622)
+.. .+|++++||||++.+|+. |++|||.... ..+ .+.+.++++.++|.+ ..|+.+++
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 875 489999999999999987 9999995421 112 234567777777743 45667765
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|+||+|||||++||+.+...|.+.|++.. .++|||+++|.+ +. ...||||+
T Consensus 1350 ---~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl-~t-i~~~DrIl 1422 (1490)
T TIGR01271 1350 ---GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRV-EA-LLECQQFL 1422 (1490)
T ss_pred ---CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HH-HHhCCEEE
Confidence 124599999999999999999999999999999999999999999999975 479999999997 34 45699999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 1423 vL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1423 VIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999999876
No 341
>KOG0056|consensus
Probab=100.00 E-value=1.9e-34 Score=300.74 Aligned_cols=222 Identities=23% Similarity=0.349 Sum_probs=179.9
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++.++++||+|.|..| +++|+|+|+++ .+|+.++++|+ ||+||||++|+|.....- .+|.|.+||+
T Consensus 535 ~G~i~fsnvtF~Y~p~-k~vl~disF~v-----~pGktvAlVG~-----SGaGKSTimRlLfRffdv---~sGsI~iDgq 600 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPG-KPVLSDISFTV-----QPGKTVALVGP-----SGAGKSTIMRLLFRFFDV---NSGSITIDGQ 600 (790)
T ss_pred CCeEEEEEeEEecCCC-CceeecceEEe-----cCCcEEEEECC-----CCCchhHHHHHHHHHhhc---cCceEEEcCc
Confidence 5678999999999655 57999999999 45555555544 599999999999998876 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
|+.. .+|+.||.||||..||.+ |+..||.|+..-..+..+....+.+.+.+ +.++..+..++++|+. + =
T Consensus 601 dIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHd--rIl~fPegY~t~VGER--G--L 673 (790)
T KOG0056|consen 601 DIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHD--RILQFPEGYNTRVGER--G--L 673 (790)
T ss_pred hHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHH--HHhcCchhhhhhhhhc--c--c
Confidence 9975 589999999999988876 99999999632222111111222222222 2357788889999982 1 1
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
-|||||||||+|||+++++|.+++|||.||+||..+.+.|...|.++++ |+|-|++.|..+ .+ --+|.|+++++|+
T Consensus 674 kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLS-Ti-vnAD~ILvi~~G~ 749 (790)
T KOG0056|consen 674 KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLS-TI-VNADLILVISNGR 749 (790)
T ss_pred ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeeh-he-ecccEEEEEeCCe
Confidence 2899999999999999999999999999999999999999999999996 789999999974 44 3699999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
|++.|..+|++
T Consensus 750 IvErG~HeeLl 760 (790)
T KOG0056|consen 750 IVERGRHEELL 760 (790)
T ss_pred EeecCcHHHHH
Confidence 99999999875
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-33 Score=315.75 Aligned_cols=203 Identities=22% Similarity=0.306 Sum_probs=171.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| |+.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.+++.
T Consensus 311 ~~l~~~~l~~~y--~~~~il~~isl~i-----~~Ge~~~l~G~N-----GsGKSTLlk~l~G~~~p---~~G~i~~~~~- 374 (638)
T PRK10636 311 PLLKMEKVSAGY--GDRIILDSIKLNL-----VPGSRIGLLGRN-----GAGKSTLIKLLAGELAP---VSGEIGLAKG- 374 (638)
T ss_pred ceEEEEeeEEEe--CCeeeeccceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCeEEECCC-
Confidence 357899999986 6678999999999 678888888887 79999999999999998 5899999742
Q ss_pred cCccccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCcccc
Q psy2519 96 VEGKFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gL 172 (622)
..+||++|+. .+.+..|+.+++.- .. + ....+++.++++.+++. +..++++++ |
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~-----~-~~~~~~~~~~L~~~~l~~~~~~~~~~~--------L 431 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA-----P-QELEQKLRDYLGGFGFQGDKVTEETRR--------F 431 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC-----c-hhhHHHHHHHHHHcCCChhHhcCchhh--------C
Confidence 3699999974 45667788887532 11 1 11235678999999996 467888777 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||+||||+ ..+.++||++++|++|+++
T Consensus 432 SgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987 24 999999995 7888999999999999997
Q ss_pred -EecChHHHHH
Q psy2519 253 -FIGSKDAALA 262 (622)
Q Consensus 253 -~~G~~~~~~~ 262 (622)
+.|+.++..+
T Consensus 507 ~~~g~~~~~~~ 517 (638)
T PRK10636 507 PFDGDLEDYQQ 517 (638)
T ss_pred EcCCCHHHHHH
Confidence 8899987644
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.5e-32 Score=312.76 Aligned_cols=204 Identities=24% Similarity=0.303 Sum_probs=170.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| |+.++++++|+++ .+|+.+.|+|+| ||||||||++|+|+.+| .+|+|.+ |.++
T Consensus 319 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~l~G~N-----GsGKSTLlk~l~G~~~p---~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQI--DGKQLVKDFSAQV-----QRGDKIALIGPN-----GCGKTTLLKLMLGQLQA---DSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEE--CCeEEEcCcEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CCcEEEE-CCCc
Confidence 57899999986 6678999999999 677788888887 79999999999999998 5899998 5432
Q ss_pred CccccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCccccCh
Q psy2519 97 EGKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gLSg 174 (622)
.+||++|+. .+++.+||.||+.+...... .. ....++.++++.+++. +..++.+++ |||
T Consensus 383 ------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~--------LSg 443 (635)
T PRK11147 383 ------EVAYFDQHRAELDPEKTVMDNLAEGKQEVM---VN--GRPRHVLGYLQDFLFHPKRAMTPVKA--------LSG 443 (635)
T ss_pred ------EEEEEeCcccccCCCCCHHHHHHhhccccc---cc--chHHHHHHHHHhcCCCHHHHhChhhh--------CCH
Confidence 599999975 68999999999987532110 01 1134577899999995 467888777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec-CCceEE
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DSRTAF 253 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~-~G~iv~ 253 (622)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||. ..+.++||++++++ +|++..
T Consensus 444 GekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 444 GERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEE
Confidence 9999999999999999999999999999999999999999875 34999999995 68889999999997 899855
Q ss_pred -ecChHHH
Q psy2519 254 -IGSKDAA 260 (622)
Q Consensus 254 -~G~~~~~ 260 (622)
.|+-++.
T Consensus 519 ~~g~y~~y 526 (635)
T PRK11147 519 YVGGYHDA 526 (635)
T ss_pred ccCCHHHH
Confidence 5666654
No 344
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=247.50 Aligned_cols=195 Identities=22% Similarity=0.291 Sum_probs=168.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+..++||+.. .++.-.|.++|+++ .+|+.+.+.|| |||||||||.-+.|.+.+....+|++++|++++
T Consensus 2 ~l~l~nvsl~--l~g~cLLa~~n~Ti-----a~GeivtlMGP-----SGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l 69 (213)
T COG4136 2 MLCLKNVSLR--LPGSCLLANVNFTI-----AKGEIVTLMGP-----SGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69 (213)
T ss_pred ceeeeeeeec--CCCceEEEeeeEEe-----cCCcEEEEECC-----CCccHHHHHHHHHhhcccCcceeeEEEECCeec
Confidence 3567899875 46777899999999 56666666655 589999999999999998777899999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
+. ..+|++|++|||+.+||+++|-+|+.|+... .++.+.+++.++..+++.||....++.+.+ |||
T Consensus 70 ~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~----~~KG~aRr~~a~aAL~~~gL~g~f~~dP~t--------lSG 137 (213)
T COG4136 70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPA----TLKGNARRNAANAALERSGLDGAFHQDPAT--------LSG 137 (213)
T ss_pred cccchhhhheeeeecccccccccccccceEEecCc----ccccHHHHhhHHHHHHHhccchhhhcChhh--------cCc
Confidence 75 4688999999999999999999999986432 233456777889999999999999988555 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
|||-||++-|+|+..|+.++||||+|.||..-+.+..+..-.-.++.|...|.+|||. .++
T Consensus 138 GQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~-~Dv 198 (213)
T COG4136 138 GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL-QDV 198 (213)
T ss_pred chHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc-ccC
Confidence 9999999999999999999999999999999999999988777766899999999995 444
No 345
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=8.4e-32 Score=259.06 Aligned_cols=154 Identities=23% Similarity=0.240 Sum_probs=133.5
Q ss_pred CCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccc
Q psy2519 21 PNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKF 100 (622)
Q Consensus 21 ~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~ 100 (622)
+||+++| |+.++++++ +++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|++
T Consensus 4 ~~l~~~~--~~~~~l~~~-~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~----- 62 (177)
T cd03222 4 PDCVKRY--GVFFLLVEL-GVV-----KEGEVIGIVGPN-----GTGKTTAVKILAGQLIP---NGDNDEWDGIT----- 62 (177)
T ss_pred CCeEEEE--CCEEEEccC-cEE-----CCCCEEEEECCC-----CChHHHHHHHHHcCCCC---CCcEEEECCEE-----
Confidence 7899986 778888874 777 678888888887 89999999999999998 58999999863
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHH
Q psy2519 101 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180 (622)
Q Consensus 101 r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRv 180 (622)
++|++|+.. ||||||||+
T Consensus 63 ---i~~~~q~~~-----------------------------------------------------------LSgGq~qrv 80 (177)
T cd03222 63 ---PVYKPQYID-----------------------------------------------------------LSGGELQRV 80 (177)
T ss_pred ---EEEEcccCC-----------------------------------------------------------CCHHHHHHH
Confidence 788887432 799999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe--cChH
Q psy2519 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI--GSKD 258 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~--G~~~ 258 (622)
+|||+|+.+|++++|||||+|||+.++..+.+.+++++++.+.|||++||++ +++.++||++++|+++-.++. |.|.
T Consensus 81 ~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 81 AIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999999999999999999999999999999874349999999996 678889999999998766654 5554
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=9.7e-32 Score=308.87 Aligned_cols=206 Identities=18% Similarity=0.267 Sum_probs=166.4
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||++.|. ++.++++++|+++ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~-~~~~il~~vsl~i-----~~Ge~i~LvG~N-----GsGKSTLLk~L~Gll~p---~~G~I~~~~~- 571 (718)
T PLN03073 507 PIISFSDASFGYP-GGPLLFKNLNFGI-----DLDSRIAMVGPN-----GIGKSTILKLISGELQP---SSGTVFRSAK- 571 (718)
T ss_pred ceEEEEeeEEEeC-CCCeeEeccEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CCceEEECCc-
Confidence 3578999999972 3456899999999 678888888887 89999999999999998 5899998752
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccCh
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSg 174 (622)
..+||++|+. .+.+++.++.........+ ... .++++++++.+|+.+ ..++.+++ |||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~~--------LSg 630 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMYT--------LSG 630 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCccc--------cCH
Confidence 4699999975 3456676665432211111 111 245778999999974 56777666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE-E
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-F 253 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv-~ 253 (622)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++. .| |||++|||+ ..+..+||++++|++|+++ +
T Consensus 631 GqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~ 705 (718)
T PLN03073 631 GQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPF 705 (718)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999998888764 34 999999996 6888999999999999998 7
Q ss_pred ecChHHHHH
Q psy2519 254 IGSKDAALA 262 (622)
Q Consensus 254 ~G~~~~~~~ 262 (622)
.|+.++..+
T Consensus 706 ~g~~~~~~~ 714 (718)
T PLN03073 706 HGTFHDYKK 714 (718)
T ss_pred CCCHHHHHH
Confidence 888876544
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5.9e-32 Score=309.19 Aligned_cols=208 Identities=21% Similarity=0.226 Sum_probs=165.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||||+|+|..+| .+|+|.++|..
T Consensus 1 ~i~i~nls~~~--g~~~~l~~vs~~i-----~~Ge~v~LvG~N-----GsGKSTLLkiL~G~~~p---d~G~I~~~~~~- 64 (638)
T PRK10636 1 MIVFSSLQIRR--GVRVLLDNATATI-----NPGQKVGLVGKN-----GCGKSTLLALLKNEISA---DGGSYTFPGNW- 64 (638)
T ss_pred CEEEEEEEEEe--CCceeecCcEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEecCCC-
Confidence 36789999996 7788999999999 678888888887 79999999999999998 48999998852
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHH-----------------------HcCCC-ccccHHHHHHHHHHHHHHhC
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMA-----------------------LLKLD-RRVKAYQRIALINSLLIELG 152 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~-----------------------~l~~~-~~~~~~~~~~~v~~~l~~lg 152 (622)
.+||++|+.... ..|+.+.+.-.. .+... ......+...+++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 378888864332 246555442110 00000 00001123457889999999
Q ss_pred CC-cccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 153 LM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 153 L~-~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
+. +..++.+++ |||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||
T Consensus 138 l~~~~~~~~~~~--------LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd 205 (638)
T PRK10636 138 FSNEQLERPVSD--------FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHD 205 (638)
T ss_pred CCchhhcCchhh--------cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCC
Confidence 97 567888877 9999999999999999999999999999999999999999998874 4699999999
Q ss_pred CcHHHHhhccceeeecCCceE-EecChHHH
Q psy2519 232 PSSELIDMFDKIILLADSRTA-FIGSKDAA 260 (622)
Q Consensus 232 ~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~ 260 (622)
. ..+.++||++++|++|+++ |.|+.++.
T Consensus 206 ~-~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 206 R-DFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred H-HHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 5 6888999999999999996 67776644
No 348
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.98 E-value=5e-32 Score=310.85 Aligned_cols=203 Identities=17% Similarity=0.169 Sum_probs=159.5
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.+.++++||++.|+ ++.++++++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.+++
T Consensus 449 ~~~i~~~nv~~~~~-~~~~il~~isl~i-----~~Ge~~~IvG~n-----GsGKSTLl~lL~Gl~~~---~~G~i~~~~- 513 (659)
T TIGR00954 449 DNGIKFENIPLVTP-NGDVLIESLSFEV-----PSGNHLLICGPN-----GCGKSSLFRILGELWPV---YGGRLTKPA- 513 (659)
T ss_pred CCeEEEEeeEEECC-CCCeeeecceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCeEeecC-
Confidence 35689999999874 3457999999999 678888888777 89999999999999987 489998864
Q ss_pred ecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcC-CCCccccC
Q psy2519 95 PVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS-ITQKVVLS 173 (622)
Q Consensus 95 ~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~-~~~~~gLS 173 (622)
++.+|||+|++.+++. |++||+.++....... ......++++++++.+++.+..++..|-.. -+....||
T Consensus 514 ------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LS 584 (659)
T TIGR00954 514 ------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLS 584 (659)
T ss_pred ------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCC
Confidence 5679999999988887 9999998864221100 000112456788999999776554321000 00123499
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||||++|||+|+++|++++|||||+|||+.+..++.+.+++ .|+|+|++||++ +. .+.+|++++|+
T Consensus 585 gGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~-~~-~~~~d~il~l~ 652 (659)
T TIGR00954 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRK-SL-WKYHEYLLYMD 652 (659)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCch-HH-HHhCCEEEEEe
Confidence 9999999999999999999999999999999999999988865 389999999997 34 57899999996
No 349
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=2.4e-31 Score=260.14 Aligned_cols=215 Identities=19% Similarity=0.248 Sum_probs=185.7
Q ss_pred cccCCccccc-cccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 18 EEVPNVDFSE-IVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 18 ~~~~~~~~~~-~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
..+.++.+.+ ......+|+|+|+++ .+|+.+.++|.| |||||||||+|+|..+| ++|+|.++|+-.
T Consensus 25 ~~~~~~~~~~~~~~~~~aL~disf~i-----~~Ge~vGiiG~N-----GaGKSTLlkliaGi~~P---t~G~v~v~G~v~ 91 (249)
T COG1134 25 KRLKGLAKGGRKVAEFWALKDISFEI-----YKGERVGIIGHN-----GAGKSTLLKLIAGIYKP---TSGKVKVTGKVA 91 (249)
T ss_pred HHHHHHhcCCCCcceEEEecCceEEE-----eCCCEEEEECCC-----CCcHHHHHHHHhCccCC---CCceEEEcceEe
Confidence 3344444332 234578999999999 688899999888 79999999999999999 599999999743
Q ss_pred CccccccEEEEec-CCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 97 EGKFRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 97 ~~~~r~~igyV~Q-~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
.+.. .-.+-|.+|.+||+.+.+.+.. .++++.+++++++++.-+|.+..|.++.+ +|.|
T Consensus 92 ---------~li~lg~Gf~pelTGreNi~l~~~~~G---~~~~ei~~~~~eIieFaELG~fi~~Pvkt--------YSSG 151 (249)
T COG1134 92 ---------PLIELGAGFDPELTGRENIYLRGLILG---LTRKEIDEKVDEIIEFAELGDFIDQPVKT--------YSSG 151 (249)
T ss_pred ---------hhhhcccCCCcccchHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHHHhhCchhh--------ccHH
Confidence 2222 2346788999999999877653 46788889999999999999999999888 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
|+-|+++|.+...+|++||+||-.+--|+.=+++-.+.++++.+ ++.|||+++||+ ..+.++|||++.|++|++...|
T Consensus 152 M~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~-~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G 229 (249)
T COG1134 152 MYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE-KNKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEG 229 (249)
T ss_pred HHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEECCH-HHHHHhcCeeEEEeCCEEEEcC
Confidence 99999999999999999999999999999999999999999977 579999999996 7999999999999999999999
Q ss_pred ChHHHHHHHHhC
Q psy2519 256 SKDAALAFLESQ 267 (622)
Q Consensus 256 ~~~~~~~~~~~~ 267 (622)
+++++.+++...
T Consensus 230 ~~~~vi~~Y~~~ 241 (249)
T COG1134 230 SPEEVIPAYEED 241 (249)
T ss_pred CHHHHHHHHHHh
Confidence 999999877643
No 350
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=1.9e-31 Score=248.85 Aligned_cols=143 Identities=30% Similarity=0.394 Sum_probs=129.0
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++|+++.| ++.++++++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 2 ~~~~l~~~~--~~~~~l~~~~~~~-----~~Ge~~~i~G~n-----GsGKStLl~~l~G~~~~---~~G~i~~~~~---- 62 (144)
T cd03221 2 ELENLSKTY--GGKLLLKDISLTI-----NPGDRIGLVGRN-----GAGKSTLLKLIAGELEP---DEGIVTWGST---- 62 (144)
T ss_pred EEEEEEEEE--CCceEEEeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CceEEEECCe----
Confidence 578999986 5557999999999 677788888777 89999999999999998 5999999985
Q ss_pred cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHH
Q psy2519 99 KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178 (622)
Q Consensus 99 ~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrq 178 (622)
+.++|++| ||+||+|
T Consensus 63 ---~~i~~~~~--------------------------------------------------------------lS~G~~~ 77 (144)
T cd03221 63 ---VKIGYFEQ--------------------------------------------------------------LSGGEKM 77 (144)
T ss_pred ---EEEEEEcc--------------------------------------------------------------CCHHHHH
Confidence 46899998 6999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 179 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 179 RvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|++|||+|+.+|+++++||||+|||+.++..+.+.++++ +.|++++||++ +++.+++|++++|++|+
T Consensus 78 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 78 RLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999876 36999999996 68888999999999986
No 351
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1e-31 Score=247.69 Aligned_cols=215 Identities=20% Similarity=0.227 Sum_probs=171.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE-
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK- 94 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~- 94 (622)
..+++.++++.| |....+++||+.+ .+|+...|+|.+ ||||||||++|++++.| .+|+|.+.-+
T Consensus 5 PLL~V~~lsk~Y--g~~~gc~~vsF~l-----~PGeVLgiVGES-----GSGKtTLL~~is~rl~p---~~G~v~Y~~r~ 69 (258)
T COG4107 5 PLLSVSGLSKLY--GPGKGCRDVSFDL-----YPGEVLGIVGES-----GSGKTTLLKCISGRLTP---DAGTVTYRMRD 69 (258)
T ss_pred cceeehhhhhhh--CCCcCccccceee-----cCCcEEEEEecC-----CCcHHhHHHHHhcccCC---CCCeEEEEcCC
Confidence 457899999996 7777899999999 677777777664 89999999999999999 5899998543
Q ss_pred --ecC-----c-c----ccccEEEEecCCC--CCCCCC----HHHHH-HHHHHcCCCccccHHHHHHHHHHHHHHhCCCc
Q psy2519 95 --PVE-----G-K----FRSACGFMYQHDL--FSPSLT----VYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMN 155 (622)
Q Consensus 95 --~~~-----~-~----~r~~igyV~Q~~~--l~~~lT----V~E~l-~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 155 (622)
+.. . + .|..-|||.|++. +-...+ +-|-+ +.+++.+ ...++.+.++++++.++.
T Consensus 70 ~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY-------G~iR~~a~~WL~~VEI~~ 142 (258)
T COG4107 70 GQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY-------GNIRAEAQDWLEEVEIDL 142 (258)
T ss_pred CCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh-------hhHHHHHHHHHHhcccCc
Confidence 321 1 1 4667899999864 433333 23322 2233222 235666789999999854
Q ss_pred -ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH
Q psy2519 156 -SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234 (622)
Q Consensus 156 -~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~ 234 (622)
..|..+.. +|||||||+.|||-|++.|++.|+||||.|||...+..++++++.+..+.|.+++++|||. .
T Consensus 143 ~RiDD~Prt--------FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~ 213 (258)
T COG4107 143 DRIDDLPRT--------FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-A 213 (258)
T ss_pred ccccCcccc--------cchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-H
Confidence 34555333 9999999999999999999999999999999999999999999999988899999999996 5
Q ss_pred HHHhhccceeeecCCceEEecChHHHH
Q psy2519 235 ELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 235 ~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
.+.-++||.++|++|++++.|-++.++
T Consensus 214 VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 214 VARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred HHHHhhhcceeecCCCEeccccccccc
Confidence 666779999999999999999888664
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=3.3e-31 Score=303.41 Aligned_cols=208 Identities=22% Similarity=0.284 Sum_probs=162.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|..
T Consensus 3 ~l~i~~ls~~~--~~~~il~~is~~i-----~~Ge~v~LvG~N-----GsGKSTLLriiaG~~~p---~~G~I~~~~~~- 66 (635)
T PRK11147 3 LISIHGAWLSF--SDAPLLDNAELHI-----EDNERVCLVGRN-----GAGKSTLMKILNGEVLL---DDGRIIYEQDL- 66 (635)
T ss_pred EEEEeeEEEEe--CCceeEeCcEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CCeEEEeCCCC-
Confidence 46899999996 6778999999999 677888888887 89999999999999998 48999998732
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHH------------------------------HHHcCCC-ccccHHHHHHHHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYF------------------------------MALLKLD-RRVKAYQRIALIN 145 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f------------------------------~~~l~~~-~~~~~~~~~~~v~ 145 (622)
.++|++|.+......+|.+++.. ....... ......+...+++
T Consensus 67 ------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (635)
T PRK11147 67 ------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN 140 (635)
T ss_pred ------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 25677775433333455554321 1100000 0000012345788
Q ss_pred HHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEE
Q psy2519 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225 (622)
Q Consensus 146 ~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tv 225 (622)
++++.+|+.. ++.+++ |||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.||
T Consensus 141 ~~l~~lgl~~--~~~~~~--------LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tv 206 (635)
T PRK11147 141 EVLAQLGLDP--DAALSS--------LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSI 206 (635)
T ss_pred HHHHhCCCCC--CCchhh--------cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEE
Confidence 9999999963 677666 9999999999999999999999999999999999999999999987 2499
Q ss_pred EEEeccCcHHHHhhccceeeecCCceE-EecChHHHH
Q psy2519 226 LCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAAL 261 (622)
Q Consensus 226 i~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 261 (622)
|+||||+ ..+.++||+|++|++|+++ +.|+.++..
T Consensus 207 livsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 207 IFISHDR-SFIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred EEEeCCH-HHHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 9999995 6888999999999999997 568877543
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=6.6e-31 Score=252.62 Aligned_cols=161 Identities=25% Similarity=0.295 Sum_probs=133.1
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecC
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 110 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~ 110 (622)
++++++++|+++ .+|+.++++|+| |||||||||+|.+ .+|++.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i-----~~G~~~~l~G~n-----G~GKSTLl~~il~-------~~G~v~~~~~~~-~~~~~~~~~~~q- 67 (176)
T cd03238 7 NVHNLQNLDVSI-----PLNVLVVVTGVS-----GSGKSTLVNEGLY-------ASGKARLISFLP-KFSRNKLIFIDQ- 67 (176)
T ss_pred eeeeecceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhh-------cCCcEEECCccc-ccccccEEEEhH-
Confidence 367899999999 677777888776 8999999999963 379999988732 223445888877
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHHHhhC
Q psy2519 111 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189 (622)
Q Consensus 111 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~ 189 (622)
.++++.++|.+ ..++++.+ ||||||||++||++|+.+
T Consensus 68 ----------------------------------~~~l~~~~L~~~~~~~~~~~--------LSgGq~qrl~laral~~~ 105 (176)
T cd03238 68 ----------------------------------LQFLIDVGLGYLTLGQKLST--------LSGGELQRVKLASELFSE 105 (176)
T ss_pred ----------------------------------HHHHHHcCCCccccCCCcCc--------CCHHHHHHHHHHHHHhhC
Confidence 14677888875 46777666 999999999999999999
Q ss_pred --CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 190 --PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 190 --P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
|+++||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++ +.||++++|.+|+....|
T Consensus 106 ~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~-~~~-~~~d~i~~l~~g~~~~~~ 170 (176)
T cd03238 106 PPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNL-DVL-SSADWIIDFGPGSGKSGG 170 (176)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHH-HhCCEEEEECCCCCCCCc
Confidence 999999999999999999999999999986 799999999997 455 689999999776554443
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=2.8e-31 Score=327.73 Aligned_cols=205 Identities=20% Similarity=0.257 Sum_probs=166.4
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.++++|++|+|+.. +.++|+|+|+++ ++|+.++++|++ |||||||+++|.|..+| .+|.+.
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i-----~~Ge~vaIvG~s-----GSGKSTLl~lLlG~~~~---~~G~i~----- 675 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEI-----PVGSLVAIVGGT-----GEGKTSLISAMLGELSH---AETSSV----- 675 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCcc---cCCCEE-----
Confidence 57899999998532 467999999999 677788887775 89999999999999998 477653
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCCcCCCC
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQ 168 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~~~~~~ 168 (622)
.+++.++||+|++.+++. |++|||.|+... ++ ++.+++++..+| ++..++.+|+ .
T Consensus 676 ---~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~~------~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe----~ 737 (1495)
T PLN03232 676 ---VIRGSVAYVPQVSWIFNA-TVRENILFGSDF------ES----ERYWRAIDVTALQHDLDLLPGRDLTEIGE----R 737 (1495)
T ss_pred ---EecCcEEEEcCccccccc-cHHHHhhcCCcc------CH----HHHHHHHHHhCCHHHHHhCCCCCCceecC----C
Confidence 346789999999998875 999999997421 11 234445555554 3445677776 2
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~-l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
...||||||||++||||+..+|+++|||||||+||+.+..++++. ++... .|+|+|++||++ ...+.+|+|++|+
T Consensus 738 G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~--~~l~~aD~Ii~L~ 813 (1495)
T PLN03232 738 GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQL--HFLPLMDRIILVS 813 (1495)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECCh--hhHHhCCEEEEEe
Confidence 345999999999999999999999999999999999999998765 55543 589999999997 3457899999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|++++.|+.+++.
T Consensus 814 ~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 814 EGMIKEEGTFAELS 827 (1495)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999999875
No 355
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=3e-31 Score=327.85 Aligned_cols=204 Identities=20% Similarity=0.261 Sum_probs=167.8
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee-eEEEECCE
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID-GDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~-G~I~~~G~ 94 (622)
.++++|++|+|..+ +.++|+++|+++ ++|+.++++|++ |||||||+++|.|..+| .+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i-----~~Ge~vaIvG~s-----GSGKSTLl~lLlG~~~~---~~GG~I~l--- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDV-----PVGSLVAIVGST-----GEGKTSLISAMLGELPP---RSDASVVI--- 677 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEe-----cCCCEEEEECCC-----CCCHHHHHHHHHHhhcc---CCCceEEE---
Confidence 58899999998533 367999999999 677788888775 89999999999999998 58 89975
Q ss_pred ecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCCcCCC
Q psy2519 95 PVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~~~~~ 167 (622)
+..++||+|++.++.. ||+|||.|+... + +++.+++++..+|. +..++.+|+
T Consensus 678 ------~~~Iayv~Q~p~Lfng-TIreNI~fg~~~------d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe---- 736 (1622)
T PLN03130 678 ------RGTVAYVPQVSWIFNA-TVRDNILFGSPF------D----PERYERAIDVTALQHDLDLLPGGDLTEIGE---- 736 (1622)
T ss_pred ------cCeEEEEcCccccCCC-CHHHHHhCCCcc------c----HHHHHHHHHHhCcHHHHHhCCCcccccccC----
Confidence 4579999999998865 999999997421 1 22345566655553 344677776
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~-~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
....||||||||++||||+..+|+++|||||||+||+.+..++++ .++.+. .|+|+|++||++ ...+.+|+|++|
T Consensus 737 ~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l--~~l~~aD~Ii~L 812 (1622)
T PLN03130 737 RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQL--HFLSQVDRIILV 812 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCH--hHHHhCCEEEEE
Confidence 234599999999999999999999999999999999999998864 566554 489999999997 456789999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|+.+++.
T Consensus 813 ~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 813 HEGMIKEEGTYEELS 827 (1622)
T ss_pred eCCEEEEeCCHHHHH
Confidence 999999999999875
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=4.9e-31 Score=297.89 Aligned_cols=195 Identities=25% Similarity=0.250 Sum_probs=160.4
Q ss_pred CCcccCC-ccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEE---
Q psy2519 16 NNEEVPN-VDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIR--- 90 (622)
Q Consensus 16 ~~~~~~~-~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~--- 90 (622)
...+++. +++.| |. ..+|++++ .+ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.
T Consensus 71 ~p~~~~~~~~~~y--g~~~~~L~~l~-~i-----~~Gev~gLvG~N-----GaGKSTLlkiL~G~l~p---~~G~i~~~~ 134 (590)
T PRK13409 71 LPEELEEEPVHRY--GVNGFKLYGLP-IP-----KEGKVTGILGPN-----GIGKTTAVKILSGELIP---NLGDYEEEP 134 (590)
T ss_pred CchhhccCceEEe--cCCceeEecCC-cC-----CCCCEEEEECCC-----CCCHHHHHHHHhCCccC---CCccccCCC
Confidence 3444544 88886 55 35899998 66 577788888887 89999999999999999 489997
Q ss_pred --------ECCEecCc---c---ccccEEEEecCCCCCCCC---CHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC
Q psy2519 91 --------VNGKPVEG---K---FRSACGFMYQHDLFSPSL---TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL 153 (622)
Q Consensus 91 --------~~G~~~~~---~---~r~~igyV~Q~~~l~~~l---TV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL 153 (622)
++|+++.. . .+..+++.+|...+.|.+ ||+|++... +.+++++++++.++|
T Consensus 135 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l 202 (590)
T PRK13409 135 SWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGL 202 (590)
T ss_pred cHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCC
Confidence 99998753 1 123466667654444433 999998631 123467899999999
Q ss_pred CcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 154 MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 154 ~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
.+..|+.+++ |||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++
T Consensus 203 ~~~~~~~~~~--------LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~- 271 (590)
T PRK13409 203 ENILDRDISE--------LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDL- 271 (590)
T ss_pred chhhcCChhh--------CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCH-
Confidence 9888999887 999999999999999999999999999999999999999999999975 89999999996
Q ss_pred HHHHhhccceeeecCC
Q psy2519 234 SELIDMFDKIILLADS 249 (622)
Q Consensus 234 ~~i~~~~D~v~~L~~G 249 (622)
+++..++|++++|.+|
T Consensus 272 ~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 272 AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhCCEEEEEeCC
Confidence 6888999999999764
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=8.8e-31 Score=323.75 Aligned_cols=210 Identities=20% Similarity=0.302 Sum_probs=165.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|++|+|..++.++|+++|+++ ++|+.++++|++ ||||||||++|+|..+| .+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i-----~~G~~v~IvG~~-----GsGKSTLl~~l~g~~~~---~~G~i~~~g--- 699 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSI-----PEGALVAVVGQV-----GCGKSSLLSALLAEMDK---VEGHVHMKG--- 699 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCcc---CCcEEEECC---
Confidence 68899999998544467999999999 677788888776 89999999999999998 589999987
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHH--HHHHHHHHhCC-CcccCCccCCcCCCCccccC
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA--LINSLLIELGL-MNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~--~v~~~l~~lgL-~~~~~~~v~~~~~~~~~gLS 173 (622)
.+|||+|++.++ +.||+||+.|+... +++...+ ++.++.+.++. .+..++.+|+ ....||
T Consensus 700 ------~i~yv~Q~~~l~-~~Ti~eNI~~g~~~------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~----~g~~LS 762 (1522)
T TIGR00957 700 ------SVAYVPQQAWIQ-NDSLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRTEIGE----KGVNLS 762 (1522)
T ss_pred ------EEEEEcCCcccc-CCcHHHHhhcCCcc------CHHHHHHHHHHhCCHHHHHhcCCCCCceecC----CCCCCC
Confidence 499999998876 46999999986321 1111111 11122333433 2233455555 123499
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT-SQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~-~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
||||||++|||||..+|++++|||||++||+.+..++.+.+.+.. ...|+|+|++||++ +.+ +.+|+|++|++|+++
T Consensus 763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~-~~l-~~~D~ii~l~~G~i~ 840 (1522)
T TIGR00957 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI-SYL-PQVDVIIVMSGGKIS 840 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCCh-hhh-hhCCEEEEecCCeEE
Confidence 999999999999999999999999999999999999999997542 12479999999997 344 569999999999999
Q ss_pred EecChHHHH
Q psy2519 253 FIGSKDAAL 261 (622)
Q Consensus 253 ~~G~~~~~~ 261 (622)
..|+.+++.
T Consensus 841 ~~g~~~~l~ 849 (1522)
T TIGR00957 841 EMGSYQELL 849 (1522)
T ss_pred eeCCHHHHH
Confidence 999998875
No 358
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.4e-31 Score=245.56 Aligned_cols=187 Identities=23% Similarity=0.327 Sum_probs=164.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+.+.+|++.. .|+..++.++++++ .+|+.+.+-|+| |||||||||+|+|+.+| .+|+|.++|.++
T Consensus 2 ~L~a~~L~~~--R~e~~lf~~L~f~l-----~~Ge~~~i~G~N-----G~GKTtLLRilaGLl~p---~~G~v~~~~~~i 66 (209)
T COG4133 2 MLEAENLSCE--RGERTLFSDLSFTL-----NAGEALQITGPN-----GAGKTTLLRILAGLLRP---DAGEVYWQGEPI 66 (209)
T ss_pred cchhhhhhhc--cCcceeecceeEEE-----cCCCEEEEECCC-----CCcHHHHHHHHHcccCC---CCCeEEecCCCC
Confidence 3567888876 68889999999999 677788887777 79999999999999999 499999999998
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
+. .+++.+-|+--++.+=+.|||.|||.|..+..... ..+.+.+.++.+||....|.+++. ||
T Consensus 67 ~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~------~~~~i~~Al~~vgL~g~~dlp~~~--------LS 132 (209)
T COG4133 67 QNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG------NAATIWEALAQVGLAGLEDLPVGQ--------LS 132 (209)
T ss_pred ccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCC------chhhHHHHHHHcCcccccccchhh--------cc
Confidence 76 25577888888889999999999999998776421 124577899999999999999888 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
-||||||+|||-++..+++-|||||+++||......+-.++..-++ .|-.||.+||||.
T Consensus 133 AGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l 191 (209)
T COG4133 133 AGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPL 191 (209)
T ss_pred hhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCcc
Confidence 9999999999999999999999999999999999999999999887 6778999999984
No 359
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-31 Score=275.58 Aligned_cols=223 Identities=23% Similarity=0.344 Sum_probs=180.4
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.....++||+|.| .+..++|.++|+++ .+|+++.++|+ ||+||||++++|-....+ .+|.|.+||+
T Consensus 260 ~g~v~F~~V~F~y-~~~r~iL~~isf~i-----~~g~tvAiVg~-----SG~gKsTI~rllfRFyD~---~sG~I~id~q 325 (497)
T COG5265 260 LGAVAFINVSFAY-DPRRPILNGISFTI-----PLGKTVAIVGE-----SGAGKSTILRLLFRFYDV---NSGSITIDGQ 325 (497)
T ss_pred cceEEEEEEEeec-cccchhhcCccccc-----cCccEEEEEeC-----CCCcHHHHHHHHHHHhCC---cCceEEEcch
Confidence 3567789999998 57788999999999 56777777766 489999999999999988 4999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
++.. .+|+.||.||||..|+.+ |...|+.++..-.....+....+...+.+.++ .+++..++.||+.. -.
T Consensus 326 dir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerg-lk-- 399 (497)
T COG5265 326 DIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERG-LK-- 399 (497)
T ss_pred hHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhe-ee--
Confidence 9865 489999999999888866 99999998742221111111112223334444 34677889998821 12
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||+++++|++|++||.||+||..+.+++...|++++ .|+|-+++.|..+ -+. -+|.|++|++|+
T Consensus 400 -lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrls-ti~-~adeiivl~~g~ 474 (497)
T COG5265 400 -LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLS-TII-DADEIIVLDNGR 474 (497)
T ss_pred -ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhh-hcc-CCceEEEeeCCE
Confidence 89999999999999999999999999999999999999999999998 4899999999974 443 589999999999
Q ss_pred eEEecChHHHHH
Q psy2519 251 TAFIGSKDAALA 262 (622)
Q Consensus 251 iv~~G~~~~~~~ 262 (622)
|++.|+.++++.
T Consensus 475 i~erg~h~~ll~ 486 (497)
T COG5265 475 IVERGTHEELLA 486 (497)
T ss_pred EEecCcHHHHHH
Confidence 999999998764
No 360
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.4e-30 Score=242.47 Aligned_cols=153 Identities=33% Similarity=0.539 Sum_probs=135.2
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++|+++.| .+.++++++|+++ .+|+.+.++|+| |||||||+++|+|.+++ .+|+|.++|.++..
T Consensus 1 ~~~~~~~~~--~~~~~l~~~~~~i-----~~g~~~~i~G~n-----GsGKStll~~l~g~~~~---~~G~i~~~~~~~~~ 65 (157)
T cd00267 1 EIENLSFRY--GGRTALDNVSLTL-----KAGEIVALVGPN-----GSGKSTLLRAIAGLLKP---TSGEILIDGKDIAK 65 (157)
T ss_pred CeEEEEEEe--CCeeeEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CccEEEECCEEccc
Confidence 367888886 3457999999999 577777788777 89999999999999988 48999999998753
Q ss_pred ----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 99 ----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
..++.++|++| |||
T Consensus 66 ~~~~~~~~~i~~~~q--------------------------------------------------------------lS~ 83 (157)
T cd00267 66 LPLEELRRRIGYVPQ--------------------------------------------------------------LSG 83 (157)
T ss_pred CCHHHHHhceEEEee--------------------------------------------------------------CCH
Confidence 24577888888 799
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||+||++||++++.+|++++|||||+|||+.++..+.+.++++++ .++|++++||++ +++...||+++++++|+
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999999999999987 489999999996 68888899999999875
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=4.4e-30 Score=283.65 Aligned_cols=207 Identities=22% Similarity=0.286 Sum_probs=173.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++.++|++++| |..++++++++++ .+|.+..++|.| |||||||||+|+|...| .+|+|...+.
T Consensus 3 ~i~~~~ls~~~--g~~~l~~~~~l~~-----~~G~riGLvG~N-----GaGKSTLLkilaG~~~~---~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAY--GDRPLLENVSLTL-----NPGERIGLVGRN-----GAGKSTLLKILAGELEP---DSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEee--CCceeecCCccee-----CCCCEEEEECCC-----CCCHHHHHHHHcCCCcC---CCCeEeecCC--
Confidence 56789999996 8899999999999 788899999888 79999999999999999 5899987542
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCC--Ccc-------------------------ccHHHHHHHHHHHHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL--DRR-------------------------VKAYQRIALINSLLI 149 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~--~~~-------------------------~~~~~~~~~v~~~l~ 149 (622)
-++||+.|++.+.+..||.+.+.-+..-.. ... ....+.+.++..++.
T Consensus 66 -----~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~ 140 (530)
T COG0488 66 -----LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALL 140 (530)
T ss_pred -----ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHh
Confidence 369999999999999999998866432100 000 000112357788999
Q ss_pred HhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Q psy2519 150 ELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229 (622)
Q Consensus 150 ~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~t 229 (622)
.+|+.+. ++.+++ ||||||.||++|++|+.+|++|||||||+.||..+..-+-+.|++. .| |+|+||
T Consensus 141 gLg~~~~-~~~~~~--------LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVS 207 (530)
T COG0488 141 GLGFPDE-DRPVSS--------LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVS 207 (530)
T ss_pred cCCCCcc-cCchhh--------cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEe
Confidence 9999877 888888 9999999999999999999999999999999999999999999864 57 999999
Q ss_pred ccCcHHHHhhccceeeecCCce-EEecChHH
Q psy2519 230 HQPSSELIDMFDKIILLADSRT-AFIGSKDA 259 (622)
Q Consensus 230 H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~ 259 (622)
|| +..+-+.|++|+-++.|++ .|.|.-+.
T Consensus 208 HD-R~FLd~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 208 HD-RYFLDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred CC-HHHHHHHhhheEEecCCceeEecCCHHH
Confidence 99 7899999999999999987 45565553
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=1.4e-29 Score=312.21 Aligned_cols=196 Identities=21% Similarity=0.308 Sum_probs=152.0
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 111 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~ 111 (622)
.++|+++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++| .++||+|++
T Consensus 439 ~~~l~~i~l~i-----~~G~~~~I~G~~-----GsGKSTLl~~l~G~~~~---~~G~i~~~g---------~iayv~Q~~ 496 (1490)
T TIGR01271 439 TPVLKNISFKL-----EKGQLLAVAGST-----GSGKSSLLMMIMGELEP---SEGKIKHSG---------RISFSPQTS 496 (1490)
T ss_pred CcceeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECC---------EEEEEeCCC
Confidence 46899999999 677778887776 89999999999999998 589999988 399999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC
Q psy2519 112 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191 (622)
Q Consensus 112 ~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~ 191 (622)
.+++. ||+||+.|+..... .......+....++.++.+. +..++.+|+. ...||||||||++||||++.+|+
T Consensus 497 ~l~~~-Ti~eNI~~g~~~~~-~~~~~~~~~~~L~~~l~~l~--~g~~t~vg~~----g~~LSgGqkqRi~lARAl~~~~~ 568 (1490)
T TIGR01271 497 WIMPG-TIKDNIIFGLSYDE-YRYTSVIKACQLEEDIALFP--EKDKTVLGEG----GITLSGGQRARISLARAVYKDAD 568 (1490)
T ss_pred ccCCc-cHHHHHHhccccch-HHHHHHHHHHhHHHHHHhcc--ccccccccCc----CCCcCHHHHHHHHHHHHHHcCCC
Confidence 98875 99999998743210 00000000001122233222 2223445541 23499999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 192 LLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 192 lLlLDEPTsgLD~~~~~~i~~~-l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++||||||+|||+.++.++.+. ++++. .|+|+|++||++ ..+ +.||++++|++|+++..|+.+++.
T Consensus 569 illLDep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~-~~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 569 LYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKL-EHL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCCh-HHH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999984 67765 489999999997 455 569999999999999999998875
No 363
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=1.3e-29 Score=312.80 Aligned_cols=197 Identities=22% Similarity=0.277 Sum_probs=152.5
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEec
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQ 109 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q 109 (622)
++.++|+++|+++ ++|+.++++|+| ||||||||++|+|..+| .+|+|.++ +.+|||+|
T Consensus 671 ~~~~iL~~isl~i-----~~G~~~~IiG~n-----GsGKSTLL~~i~G~~~~---~~G~i~~~---------~~i~yv~Q 728 (1560)
T PTZ00243 671 EPKVLLRDVSVSV-----PRGKLTVVLGAT-----GSGKSTLLQSLLSQFEI---SEGRVWAE---------RSIAYVPQ 728 (1560)
T ss_pred CCceeEeeeEEEE-----CCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CCcEEEEC---------CeEEEEeC
Confidence 4567899999999 677788888776 89999999999999998 58999863 56999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh--CCCcccCCccCCcCCCCccccChHHHHHHHHHHHHh
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~ 187 (622)
++.++ ..||+||+.|+..... ....+..+...+++.++.+ |+....+....+ ||||||||++|||||+
T Consensus 729 ~~~l~-~~Tv~enI~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~--------LSGGQkqRvaLARAl~ 798 (1560)
T PTZ00243 729 QAWIM-NATVRGNILFFDEEDA-ARLADAVRVSQLEADLAQLGGGLETEIGEKGVN--------LSGGQKARVSLARAVY 798 (1560)
T ss_pred CCccC-CCcHHHHHHcCChhhH-HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCC--------CCHHHHHHHHHHHHHh
Confidence 98876 4699999998532100 0001111112334455555 554444444333 9999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
.+|+++||||||++||+.++.++++.+..... .|+|+|++||++ +.+ +.+|+|++|++|++++.|+.+++.
T Consensus 799 ~~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~-~~~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 799 ANRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLATHQV-HVV-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999875433233 489999999997 444 689999999999999999998875
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=5.4e-30 Score=294.46 Aligned_cols=219 Identities=22% Similarity=0.225 Sum_probs=159.7
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++|++++| |+.++|+++||++ .+|+.+.++|+| ||||||||++|+|+...+...+|+|.+.++
T Consensus 175 ~~~I~i~nls~~y--~~~~ll~~isl~i-----~~Ge~~gLvG~N-----GsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 175 IKDIHMENFSISV--GGRDLIVDASVTL-----AFGRHYGLVGRN-----GTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred ceeEEEceEEEEe--CCCEEEECCEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 3568899999997 6667999999999 678888888887 799999999999974111124788876554
Q ss_pred ecCc------------------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC-Cc---------------cccHHHH
Q psy2519 95 PVEG------------------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL-DR---------------RVKAYQR 140 (622)
Q Consensus 95 ~~~~------------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~-~~---------------~~~~~~~ 140 (622)
++.. ..++.+++++|++.+... ++.++... ..... +. .......
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKG-ANKDGVDKDAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cccccccc-ccccccchHHHHHHHHHHHHHHHhcCcchH
Confidence 3210 013346777775433221 22221110 00000 00 0011123
Q ss_pred HHHHHHHHHHhCCC-cccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy2519 141 IALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 219 (622)
Q Consensus 141 ~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~ 219 (622)
.+++.++++.+|+. +..++.+++ |||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~~--------LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-- 390 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATKT--------FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-- 390 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchhh--------CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--
Confidence 45677888888885 456777766 9999999999999999999999999999999999999999999875
Q ss_pred cCCCEEEEEeccCcHHHHhhccceeeecCCceE-EecChHHH
Q psy2519 220 QRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAA 260 (622)
Q Consensus 220 ~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~ 260 (622)
+.|||++|||. ..+.+.||++++|++|+++ +.|+.++.
T Consensus 391 --~~tviivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 391 --PKTFIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred --CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 57999999995 6888899999999999996 67776654
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.3e-29 Score=231.43 Aligned_cols=206 Identities=23% Similarity=0.292 Sum_probs=168.1
Q ss_pred CcccCCccccccc---cc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 17 NEEVPNVDFSEIV---GS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 17 ~~~~~~~~~~~~~---g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
.+.++||+|++.. |+ .++++++|+++ +.|+++++-|+ ||||||||||+|-|...| ++|+|++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV-----~aGECvvL~G~-----SG~GKStllr~LYaNY~~---d~G~I~v 70 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSV-----NAGECVVLHGP-----SGSGKSTLLRSLYANYLP---DEGQILV 70 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEe-----cCccEEEeeCC-----CCCcHHHHHHHHHhccCC---CCceEEE
Confidence 4678999998753 32 58999999999 56666555444 599999999999999998 5999998
Q ss_pred CCE--ecC-----c----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCC
Q psy2519 92 NGK--PVE-----G----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 159 (622)
Q Consensus 92 ~G~--~~~-----~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 159 (622)
.-+ -++ + + .|+.||||.|--...|.....|-++-.+.-+ .++.+..+.++.+++.++++.+....
T Consensus 71 ~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~ 147 (235)
T COG4778 71 RHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWS 147 (235)
T ss_pred EeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhc
Confidence 533 221 1 1 4678999999888889988888877765444 35666778889999999999776544
Q ss_pred -ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh
Q psy2519 160 -RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238 (622)
Q Consensus 160 -~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~ 238 (622)
.+.+ .||||||||.|||.++.|-+||+|||||+.||..++.-++++|++-+. .|..+|-+-|| .+.-+.
T Consensus 148 LaPaT--------FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka-~GaAlvGIFHD-eevre~ 217 (235)
T COG4778 148 LAPAT--------FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA-RGAALVGIFHD-EEVREA 217 (235)
T ss_pred CCCcc--------cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh-cCceEEEeecc-HHHHHH
Confidence 4333 999999999999999999999999999999999999999999999876 79999999999 466777
Q ss_pred hccceeeecC
Q psy2519 239 MFDKIILLAD 248 (622)
Q Consensus 239 ~~D~v~~L~~ 248 (622)
.+||++-+..
T Consensus 218 vadR~~~~~~ 227 (235)
T COG4778 218 VADRLLDVSA 227 (235)
T ss_pred Hhhheeeccc
Confidence 8999988854
No 366
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=3.3e-28 Score=247.50 Aligned_cols=195 Identities=24% Similarity=0.259 Sum_probs=148.1
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHh--------CCC--CCC--C------ceeeEEEECCE
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFL--------SQV--IDD--C------IIDGDIRVNGK 94 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~--------g~~--~~~--~------~~~G~I~~~G~ 94 (622)
+.|+++++.+ +.+..+.+.+. ||||||||++.+. +.. .|. . ...--|.++..
T Consensus 9 ~nl~~v~~~i------p~g~~~~vtGv----SGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~ 78 (261)
T cd03271 9 NNLKNIDVDI------PLGVLTCVTGV----SGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQS 78 (261)
T ss_pred hcCCCceeec------cCCcEEEEECC----CCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCC
Confidence 4688999988 44444444343 6999999998552 110 010 0 01224778887
Q ss_pred ecCcc--------------ccc----------------cEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHH
Q psy2519 95 PVEGK--------------FRS----------------ACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI 144 (622)
Q Consensus 95 ~~~~~--------------~r~----------------~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v 144 (622)
|+... +|+ .+.|..++...+..|||.|++.|...+. ..+++
T Consensus 79 pi~~~~rs~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~ 149 (261)
T cd03271 79 PIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARK 149 (261)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHH
Confidence 77431 111 1446666666678999999999986542 12356
Q ss_pred HHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q psy2519 145 NSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD---PALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220 (622)
Q Consensus 145 ~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~---P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~ 220 (622)
.++++.+||.+ ..++.+.+ ||||||||++||++|+.+ |++++|||||+|||+..+..+.+.|+++++
T Consensus 150 ~~~L~~vgL~~l~l~~~~~~--------LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~- 220 (261)
T cd03271 150 LQTLCDVGLGYIKLGQPATT--------LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD- 220 (261)
T ss_pred HHHHHHcCCchhhhcCcccc--------CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-
Confidence 78999999987 46777666 999999999999999996 799999999999999999999999999987
Q ss_pred CCCEEEEEeccCcHHHHhhccceeee------cCCceEEecCh
Q psy2519 221 RKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSK 257 (622)
Q Consensus 221 ~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~ 257 (622)
.|.|||+++|++ +.+ +.+|+++.| ++|++++.|++
T Consensus 221 ~g~tvIiitH~~-~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 221 KGNTVVVIEHNL-DVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCCEEEEEeCCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 699999999997 455 579999999 89999999974
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=9.5e-28 Score=240.78 Aligned_cols=192 Identities=21% Similarity=0.247 Sum_probs=135.6
Q ss_pred ccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHH-HHHhCCCCCCCceeeEEEEC-----------C--E
Q psy2519 29 VGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELI-RLFLSQVIDDCIIDGDIRVN-----------G--K 94 (622)
Q Consensus 29 ~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl-~~l~g~~~~~~~~~G~I~~~-----------G--~ 94 (622)
..+.++++++|+++ .+|+.+.++|+| |||||||+ ..+.. +|++.+. | .
T Consensus 5 ~~~~~~l~~vsl~i-----~~Ge~~~l~G~s-----GsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~ 66 (226)
T cd03270 5 GAREHNLKNVDVDI-----PRNKLVVITGVS-----GSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMD 66 (226)
T ss_pred cchhhccccceeec-----CCCcEEEEEcCC-----CCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccC
Confidence 34578999999999 678888888776 89999995 44431 2222110 0 0
Q ss_pred ecCc-cc-cccEEEEecCC--CCCCCCCHH---HHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCC
Q psy2519 95 PVEG-KF-RSACGFMYQHD--LFSPSLTVY---EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~-~~-r~~igyV~Q~~--~l~~~lTV~---E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~ 166 (622)
.... .. ....++..|++ .+.|..+|. |...+...+. ......++ .+.++.++|.+ ..++.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~--- 137 (226)
T cd03270 67 KPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPT--- 137 (226)
T ss_pred ccccccccCCCceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCc---
Confidence 0000 11 12334444543 334555654 3222222111 11112223 46899999976 47777666
Q ss_pred CCccccChHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++||++|+.+| ++++|||||+|||+.++.++.+.|+++++ .|.|+|++||++ +++ +.||+++
T Consensus 138 -----LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~-~~~-~~~d~i~ 209 (226)
T cd03270 138 -----LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDE-DTI-RAADHVI 209 (226)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCH-HHH-HhCCEEE
Confidence 9999999999999999998 59999999999999999999999999986 699999999997 455 6999999
Q ss_pred ee------cCCceEEec
Q psy2519 245 LL------ADSRTAFIG 255 (622)
Q Consensus 245 ~L------~~G~iv~~G 255 (622)
+| ++|+|+++|
T Consensus 210 ~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 210 DIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EeCCCccccCCEEEecC
Confidence 99 999999876
No 368
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.3e-27 Score=257.90 Aligned_cols=211 Identities=25% Similarity=0.369 Sum_probs=173.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
.+++|++.. + .++++||++ .+||.+.+-|- -|||+|-|+++|.|..++ .+|+|.+||+++.
T Consensus 264 l~v~~l~~~---~---~~~dvSf~v-----r~GEIlGiaGL-----vGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~ 324 (500)
T COG1129 264 LEVRNLSGG---G---KVRDVSFTV-----RAGEILGIAGL-----VGAGRTELARALFGARPA---SSGEILLDGKPVR 324 (500)
T ss_pred EEEecCCCC---C---ceeCceeEE-----eCCcEEEEecc-----ccCCHHHHHHHHhCCCcC---CCceEEECCEEcc
Confidence 346666653 1 467899998 45555444443 389999999999998776 4899999999885
Q ss_pred c-----cccccEEEEecC---CCCCCCCCHHHHHHHHHHcCCC-c-cccHHHHHHHHHHHHHHhCCC-cccCCccCCcCC
Q psy2519 98 G-----KFRSACGFMYQH---DLFSPSLTVYEHLYFMALLKLD-R-RVKAYQRIALINSLLIELGLM-NSQHTRIGSSSI 166 (622)
Q Consensus 98 ~-----~~r~~igyV~Q~---~~l~~~lTV~E~l~f~~~l~~~-~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~ 166 (622)
. .++..++||+.| +.+++.++|.||+.++...+.. . -.+....++.+++..+.+++. ...+..+++
T Consensus 325 ~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~--- 401 (500)
T COG1129 325 IRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGT--- 401 (500)
T ss_pred CCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhc---
Confidence 4 367899999986 4699999999999998322211 1 245555667889999999994 445677777
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||.||||.|||.|..+|++|||||||.|.|..+..+|.++|+++++ +|++||++|-++ +|+..+||||++|
T Consensus 402 -----LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~-~G~ail~iSSEl-pEll~~~DRIlVm 474 (500)
T COG1129 402 -----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA-EGKAILMISSEL-PELLGLSDRILVM 474 (500)
T ss_pred -----CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH-CCCEEEEEeCCh-HHHHhhCCEEEEE
Confidence 999999999999999999999999999999999999999999999998 799999999995 7999999999999
Q ss_pred cCCceEEecCh
Q psy2519 247 ADSRTAFIGSK 257 (622)
Q Consensus 247 ~~G~iv~~G~~ 257 (622)
++|+++..=+.
T Consensus 475 ~~Gri~~e~~~ 485 (500)
T COG1129 475 REGRIVGELDR 485 (500)
T ss_pred ECCEEEEEecc
Confidence 99999875443
No 369
>KOG0054|consensus
Probab=99.95 E-value=1.3e-27 Score=282.51 Aligned_cols=215 Identities=20% Similarity=0.223 Sum_probs=181.1
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++.++++|++..|..+...||+++|+++ ++++++.|+|.- |||||||+++|-.+.+| .+|+|.+||.
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I-----~p~eKVGIVGRT-----GaGKSSL~~aLFRl~e~---~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTI-----KPGEKVGIVGRT-----GAGKSSLILALFRLVEP---AEGEILIDGV 1202 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEE-----cCCceEEEeCCC-----CCCHHHHHHHHHHhcCc---cCCeEEEcCe
Confidence 4678899999999888889999999999 788999999887 89999999999999998 4899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~ 163 (622)
|+.. ++|++++.+||||.+|.. |||+||-=..+. ++ +.+-++|++.+|. ...|..+.+
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~------sD----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY------SD----DEIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCceecC-ccccccCccccc------CH----HHHHHHHHHhChHHHHhhCCcCCCceecC
Confidence 9986 689999999999999987 999997432211 11 2233444444443 345666554
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....+|-||||-+++||||+++.+||+|||.|++.|+.+-..|.+.||+--+ ++|||.+-|... .+. =+|||
T Consensus 1272 ----gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~-TVm-d~DrV 1343 (1381)
T KOG0054|consen 1272 ----GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLN-TVM-DSDRV 1343 (1381)
T ss_pred ----CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccc-hhh-hcCeE
Confidence 2345999999999999999999999999999999999999999999999754 799999999974 554 48999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
+||++|+++++|+|.+++
T Consensus 1344 lVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1344 LVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred EEeeCCeEeecCChHHHH
Confidence 999999999999999886
No 370
>KOG0054|consensus
Probab=99.95 E-value=4.5e-27 Score=278.06 Aligned_cols=208 Identities=23% Similarity=0.314 Sum_probs=169.5
Q ss_pred ecCCcccCCccccccc-cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 14 FKNNEEVPNVDFSEIV-GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~-g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
.++.++++|.+|+... +..+.|+|+|+.+ ++|+.++++|+- |||||+||.+|.|-.+. .+|+|.++
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i-----~~G~lvaVvG~v-----GsGKSSLL~AiLGEm~~---~sG~v~v~ 581 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEI-----KKGQLVAVVGPV-----GSGKSSLLSAILGEMPK---LSGSVAVN 581 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEe-----cCCCEEEEECCC-----CCCHHHHHHHHhcCccc---ccceEEEc
Confidence 4466788999999744 2345899999999 566666666554 89999999999999987 69999999
Q ss_pred CEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc-------CCccCCcC
Q psy2519 93 GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-------HTRIGSSS 165 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v~~~~ 165 (622)
|. ++||+|++-++.. ||+|||.|+.... +++-+++++...|.+.. .+-||+
T Consensus 582 gs---------iaYv~Q~pWI~ng-TvreNILFG~~~d----------~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-- 639 (1381)
T KOG0054|consen 582 GS---------VAYVPQQPWIQNG-TVRENILFGSPYD----------EERYDKVIKACALKKDLEILPFGDLTEIGE-- 639 (1381)
T ss_pred Ce---------EEEeccccHhhCC-cHHHhhhcCcccc----------HHHHHHHHHHccCHhHHhhcCCCCcceecC--
Confidence 86 8999999987765 9999999985431 22345566666664432 345665
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
+.-.||||||||+++|||+=.|.+++|||.|.|++|+....++.+..-+-.- +++|+|++||+. +..+.+|.|++
T Consensus 640 --rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql--~~L~~ad~Iiv 714 (1381)
T KOG0054|consen 640 --RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQL--QFLPHADQIIV 714 (1381)
T ss_pred --CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCch--hhhhhCCEEEE
Confidence 3456999999999999999999999999999999999999998865554443 589999999985 66789999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|+|...|+.+|+.
T Consensus 715 l~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 715 LKDGKIVESGTYEELL 730 (1381)
T ss_pred ecCCeEecccCHHHHH
Confidence 9999999999999987
No 371
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.94 E-value=4.5e-27 Score=216.83 Aligned_cols=133 Identities=33% Similarity=0.474 Sum_probs=115.5
Q ss_pred eEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----cccccEEEEecC
Q psy2519 35 YAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 110 (622)
Q Consensus 35 l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----~~r~~igyV~Q~ 110 (622)
|+++|+++ ++|+.++++|+| |||||||+++|+|..+| .+|+|.++|+++.. ..++.++|++|+
T Consensus 1 L~~v~~~i-----~~g~~~~i~G~n-----GsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~ 67 (137)
T PF00005_consen 1 LKNVSLEI-----KPGEIVAIVGPN-----GSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQD 67 (137)
T ss_dssp EEEEEEEE-----ETTSEEEEEEST-----TSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESS
T ss_pred CCceEEEE-----cCCCEEEEEccC-----CCccccceeeecccccc---cccccccccccccccccccccccccccccc
Confidence 67899999 678888888887 89999999999999998 59999999999975 368899999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCC
Q psy2519 111 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190 (622)
Q Consensus 111 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P 190 (622)
+.+++.+||.|| ...++++++++.+++.+..++.++.. .+.||||||||++||+||+.+|
T Consensus 68 ~~~~~~~tv~~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~----~~~LS~Ge~~rl~la~al~~~~ 127 (137)
T PF00005_consen 68 PQLFPGLTVREN----------------ESDERIEEVLKKLGLEDLLDRKIGQR----ASSLSGGEKQRLALARALLKNP 127 (137)
T ss_dssp HCHHTTSBHHHH----------------HHHHHHHHHHHHTTHGGGTGSBGTSC----GGGSCHHHHHHHHHHHHHHTTS
T ss_pred cccccccccccc----------------cccccccccccccccccccccccccc----cchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999 12345778999999988777777441 1349999999999999999999
Q ss_pred CeEEEeCCCC
Q psy2519 191 ALLLCDEPTT 200 (622)
Q Consensus 191 ~lLlLDEPTs 200 (622)
++++|||||+
T Consensus 128 ~llllDEPt~ 137 (137)
T PF00005_consen 128 KLLLLDEPTN 137 (137)
T ss_dssp SEEEEESTTT
T ss_pred CEEEEeCCCC
Confidence 9999999996
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=2.1e-26 Score=254.48 Aligned_cols=205 Identities=28% Similarity=0.311 Sum_probs=169.2
Q ss_pred eecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 13 LFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
..+..++++|++++|. +++.+++++|+.+ .+|.+++++|+| |+|||||||+|+|...| .+|+|.+.
T Consensus 317 ~g~~vl~~~~~~~~y~-~~~~l~~~~s~~i-----~~g~riaiiG~N-----G~GKSTLlk~l~g~~~~---~~G~v~~g 382 (530)
T COG0488 317 LGKLVLEFENVSKGYD-GGRLLLKDLSFRI-----DRGDRIAIVGPN-----GAGKSTLLKLLAGELGP---LSGTVKVG 382 (530)
T ss_pred CCCeeEEEeccccccC-CCceeecCceEEe-----cCCCEEEEECCC-----CCCHHHHHHHHhhhccc---CCceEEeC
Confidence 4456678999999973 3368899999999 688899999888 79999999999999998 48999874
Q ss_pred CEecCccccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCcc
Q psy2519 93 GKPVEGKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKV 170 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~ 170 (622)
-. -.+||..|+. .+.+..|+.|++.-...- . ....+...|..+++. +...++++.
T Consensus 383 ~~-------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~--------~-~e~~~r~~L~~f~F~~~~~~~~v~~------- 439 (530)
T COG0488 383 ET-------VKIGYFDQHRDELDPDKTVLEELSEGFPD--------G-DEQEVRAYLGRFGFTGEDQEKPVGV------- 439 (530)
T ss_pred Cc-------eEEEEEEehhhhcCccCcHHHHHHhhCcc--------c-cHHHHHHHHHHcCCChHHHhCchhh-------
Confidence 32 3599999985 555888999988654211 0 134577899999995 455778777
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||.|+.+|+.++.+|.+|||||||+.||..+...+.+.|.+. .-|||+|||| ...+.+++++++.+.+ +
T Consensus 440 -LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~ 512 (530)
T COG0488 440 -LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHD-RYFLDRVATRIWLVED-K 512 (530)
T ss_pred -cCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCC-HHHHHhhcceEEEEcC-c
Confidence 9999999999999999999999999999999999999999999886 3499999999 5899999999999998 6
Q ss_pred eEEe-cChHHHH
Q psy2519 251 TAFI-GSKDAAL 261 (622)
Q Consensus 251 iv~~-G~~~~~~ 261 (622)
+... |..++..
T Consensus 513 ~~~~~g~y~~y~ 524 (530)
T COG0488 513 VEEFEGGYEDYL 524 (530)
T ss_pred eeEcCCCHHHHH
Confidence 5544 7766543
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=6.6e-27 Score=229.62 Aligned_cols=166 Identities=13% Similarity=0.188 Sum_probs=127.2
Q ss_pred EeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC------CceeeEEEECCEecCc-cccccEEEEe
Q psy2519 36 AIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD------CIIDGDIRVNGKPVEG-KFRSACGFMY 108 (622)
Q Consensus 36 ~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~------~~~~G~I~~~G~~~~~-~~r~~igyV~ 108 (622)
+++++++ .+| .++++|+| |||||||+++|+|+..+. ....|++.++|++... ..++.+||||
T Consensus 14 ~~~~l~~-----~~g-~~~i~G~n-----GsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vf 82 (197)
T cd03278 14 DKTTIPF-----PPG-LTAIVGPN-----GSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTF 82 (197)
T ss_pred CCeeeec-----CCC-cEEEECCC-----CCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEE
Confidence 3456665 344 77777776 899999999999997652 1124578888887643 3457899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHh-
Q psy2519 109 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL- 187 (622)
Q Consensus 109 Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~- 187 (622)
|++..+ |. . .. .++++++++. .+..++.+.+ ||||||||++||++|+
T Consensus 83 q~~~~~----------~~----~---~~----~~~~~~~l~~---~~~~~~~~~~--------LS~G~kqrl~la~~l~~ 130 (197)
T cd03278 83 DNSDGR----------YS----I---IS----QGDVSEIIEA---PGKKVQRLSL--------LSGGEKALTALALLFAI 130 (197)
T ss_pred EcCCCc----------ee----E---Ee----hhhHHHHHhC---CCccccchhh--------cCHHHHHHHHHHHHHHH
Confidence 988665 11 0 01 2355667766 4556666555 9999999999999997
Q ss_pred ---hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 188 ---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 188 ---~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
.+|++++|||||+|||+..+..+.+.|+++++ +.|||++||++ +. .+.+|+++.+..
T Consensus 131 ~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~-~~-~~~~d~v~~~~~ 190 (197)
T cd03278 131 FRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFIVITHRK-GT-MEAADRLYGVTM 190 (197)
T ss_pred hccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEEEEECCH-HH-HhhcceEEEEEe
Confidence 46699999999999999999999999999964 68999999996 44 478999999963
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=2.5e-27 Score=218.92 Aligned_cols=206 Identities=22% Similarity=0.291 Sum_probs=170.1
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
..++||+.+-. |.-.+..+ ..|+..-++||| ||||||||-.++|+++. +|+|.++|.++.
T Consensus 4 ~qln~v~~~tR------L~plS~qv-----~aGe~~HliGPN-----GaGKSTLLA~lAGm~~~----sGsi~~~G~~l~ 63 (248)
T COG4138 4 MQLNDVAESTR------LGPLSGEV-----RAGEILHLVGPN-----GAGKSTLLARMAGMTSG----SGSIQFAGQPLE 63 (248)
T ss_pred eeecccccccc------cccccccc-----ccceEEEEECCC-----CccHHHHHHHHhCCCCC----CceEEECCcchh
Confidence 45566666421 33344444 467777778777 79999999999999986 899999999986
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
. ++.|+-+|+.|+..-...|-|...+... . +.+++...++++.+.++|.+...+.+.. ||
T Consensus 64 ~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs~~q--------LS 127 (248)
T COG4138 64 AWSATELARHRAYLSQQQTPPFAMPVWHYLTLH----Q----PDKTRTELLNDVAGALALDDKLGRSTNQ--------LS 127 (248)
T ss_pred HHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc----C----chHHHHHHHHHHHhhhcccchhhhhhhh--------cC
Confidence 5 5677789999987666677888877653 2 3355666788999999999998888777 99
Q ss_pred hHHHHHHHHHHHHhh-----CC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 174 GGERKRLSFATELLT-----DP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 174 gGqrqRvsIA~aL~~-----~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||-|||-+|-..+. || ++|++|||.++||......+-.+|.++++ .|.+||++.||. +...+.+|++++|
T Consensus 128 GGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDL-NhTLrhA~~~wLL 205 (248)
T COG4138 128 GGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDL-NHTLRHAHRAWLL 205 (248)
T ss_pred cccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEeccch-hhHHHHHHHHHHH
Confidence 999999999977653 34 58999999999999999999999999998 799999999997 5778899999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
+.|++...|..+|++
T Consensus 206 ~rG~l~~~G~~~eVl 220 (248)
T COG4138 206 KRGKLLASGRREEVL 220 (248)
T ss_pred hcCeEEeecchhhhc
Confidence 999999999999876
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=4.3e-25 Score=223.84 Aligned_cols=186 Identities=17% Similarity=0.272 Sum_probs=132.4
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC----------------CCCCCceee------
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ----------------VIDDCIIDG------ 87 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~----------------~~~~~~~~G------ 87 (622)
++..++++++ ++.++++|+| ||||||||++|++. ..++ +|
T Consensus 13 ~~~~~~~~~~----------~~~~~i~GpN-----GsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~ 74 (243)
T cd03272 13 KDQTVIEPFS----------PKHNVVVGRN-----GSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSA 74 (243)
T ss_pred ccCcccccCC----------CCcEEEECCC-----CCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceE
Confidence 4555555543 5677888887 79999999999833 3332 34
Q ss_pred --EEEECCEe----cCc---cccccEEEEecCCCCCC-CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc
Q psy2519 88 --DIRVNGKP----VEG---KFRSACGFMYQHDLFSP-SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ 157 (622)
Q Consensus 88 --~I~~~G~~----~~~---~~r~~igyV~Q~~~l~~-~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 157 (622)
+|.+++.+ +.. .+++.+|+++|+..+++ ..|..|...+............. .....++.+.+++.+..
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~--~~~qg~i~~l~~l~~~~ 152 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYY--IVPQGKINSLTNMKQDE 152 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcE--EEEcCchHHhhhccccc
Confidence 56666532 111 36778999999888877 46777766665544332110000 00011233445565556
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
+..+.+ ||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++|+|+++|++
T Consensus 153 ~~~~~~--------lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~- 221 (243)
T cd03272 153 QQEMQQ--------LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRP- 221 (243)
T ss_pred cccccc--------cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-
Confidence 666555 99999999999999974 5899999999999999999999999999864 78899899984
Q ss_pred HHHHhhccceeeec
Q psy2519 234 SELIDMFDKIILLA 247 (622)
Q Consensus 234 ~~i~~~~D~v~~L~ 247 (622)
++.+.||++++|.
T Consensus 222 -~~~~~~d~i~~l~ 234 (243)
T cd03272 222 -ELLEVADKFYGVK 234 (243)
T ss_pred -HHHhhCCEEEEEE
Confidence 6789999999995
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=6.1e-27 Score=232.42 Aligned_cols=189 Identities=16% Similarity=0.124 Sum_probs=140.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|.. + +++..++++++++ .+.++|+| |||||||+++|.- ++|.+.
T Consensus 5 ~l~l~nfk-~--~~~~~~l~~~~~~----------i~~ivGpN-----GaGKSTll~~i~~-------------~~G~~~ 53 (212)
T cd03274 5 KLVLENFK-S--YAGEQVIGPFHKS----------FSAIVGPN-----GSGKSNVIDSMLF-------------VFGFRA 53 (212)
T ss_pred EEEEECcc-c--CCCCeeeccCCCC----------eEEEECCC-----CCCHHHHHHHHHH-------------HhccCH
Confidence 45566665 3 4777788877653 45677777 8999999999972 233332
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-----ccccHHHHHH--HHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-----RRVKAYQRIA--LINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
....++++++++|+..++|.+|+.|.+.+....... .....++... ..+++++.++|.+..++.++.
T Consensus 54 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~------ 127 (212)
T cd03274 54 SKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISN------ 127 (212)
T ss_pred HHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhh------
Confidence 222235799999999999999999988776543210 0011111010 125667788888888888766
Q ss_pred cccChHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 170 VVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||+|||||++||++++. +|+++++||||+|||+.++..+.+.++++++ +.|+|++||++ ++.+.|||+++
T Consensus 128 --lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~--~~~~~~d~v~~ 201 (212)
T cd03274 128 --LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRN--NMFELADRLVG 201 (212)
T ss_pred --cCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH--HHHHhCCEEEE
Confidence 99999999999999974 4799999999999999999999999999864 57889999985 78899999999
Q ss_pred ecC
Q psy2519 246 LAD 248 (622)
Q Consensus 246 L~~ 248 (622)
|..
T Consensus 202 ~~~ 204 (212)
T cd03274 202 IYK 204 (212)
T ss_pred EEe
Confidence 964
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=1.1e-25 Score=229.44 Aligned_cols=178 Identities=12% Similarity=0.106 Sum_probs=136.8
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE-ecCc------cccccEEEEecCC---------CC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK-PVEG------KFRSACGFMYQHD---------LF 113 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~-~~~~------~~r~~igyV~Q~~---------~l 113 (622)
++..+|+|+| |||||||+++|++++.+. ..|++...|. ++-. ..+..+++++|++ .+
T Consensus 25 ~~~~~IvG~N-----GsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~ 97 (251)
T cd03273 25 PQFNAITGLN-----GSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFEN 97 (251)
T ss_pred CCeEEEECCC-----CCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccC
Confidence 5577788777 899999999999998763 2468887776 3211 1245899999984 45
Q ss_pred CCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC--------------------cccCCccCCcCCCCccccC
Q psy2519 114 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM--------------------NSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 114 ~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~v~~~~~~~~~gLS 173 (622)
.|.+||.+++......+...+ .+....+++.++++.+|+. +..++.+.+ ||
T Consensus 98 ~~~ltV~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~--------lS 168 (251)
T cd03273 98 YPEITVTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTE--------LS 168 (251)
T ss_pred CceEEEEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccc--------cC
Confidence 678999999876432211000 1122346788999999996 233455444 99
Q ss_pred hHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 174 GGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 174 gGqrqRvsIA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||||++||++|+ .+|+++++||||+|||+..+..+.+.|++++ .|.|+|++||++ ++.+.||+++-+.
T Consensus 169 ~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 169 GGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 99999999999998 4789999999999999999999999999995 488999999994 7778899998875
No 378
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=4.3e-24 Score=226.45 Aligned_cols=219 Identities=23% Similarity=0.246 Sum_probs=181.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+..-..| .+.++++||++ .+|+.+.|-|- +|-|-+.|+.+|+|+.++ .+|+|.++|+++
T Consensus 257 vL~V~~L~v~~~~~-~~~v~~vs~~V-----r~GEIvGIAGV-----~GNGQ~eL~eaisGlr~~---~~G~I~l~G~~v 322 (501)
T COG3845 257 VLEVEDLSVKDRRG-VTAVKDVSFEV-----RAGEIVGIAGV-----AGNGQSELVEAISGLRKP---ASGRILLNGKDV 322 (501)
T ss_pred EEEEeeeEeecCCC-CceeeeeeeEE-----ecCcEEEEEec-----CCCCHHHHHHHHhCCCcc---CCceEEECCEec
Confidence 35788999875333 56789999999 56666666554 489999999999999987 369999999997
Q ss_pred -Cc-----cccccEEEEecCC---CCCCCCCHHHHHHHHHHcC----CCccccHHHHHHHHHHHHHHhCCCc-ccCCccC
Q psy2519 97 -EG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMALLK----LDRRVKAYQRIALINSLLIELGLMN-SQHTRIG 162 (622)
Q Consensus 97 -~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~l~----~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~ 162 (622)
.+ ..+..+||||+|. .+.+.+|+.||+.+...-+ ...-....+.++.+.+++++++... -.+.+++
T Consensus 323 ~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~ 402 (501)
T COG3845 323 LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR 402 (501)
T ss_pred cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchh
Confidence 22 2567899999975 5899999999998865432 1112455667788899999999863 2344444
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||++||+-+||+|..+|++|++.+||.|||..+...|.+.|.+.++ .|+.|++++-+. +|+.++|||
T Consensus 403 ~--------LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS~dL-DEil~lsDr 472 (501)
T COG3845 403 S--------LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLLISEDL-DEILELSDR 472 (501)
T ss_pred h--------cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEEEehhH-HHHHHhhhe
Confidence 4 999999999999999999999999999999999999999999999998 799999999996 799999999
Q ss_pred eeeecCCceEEecChHH
Q psy2519 243 IILLADSRTAFIGSKDA 259 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~ 259 (622)
|.+|.+|+++...++++
T Consensus 473 IaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 473 IAVIYEGRIVGIVPPEE 489 (501)
T ss_pred eeeeeCCceeccccccc
Confidence 99999999998887765
No 379
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=7.3e-25 Score=224.92 Aligned_cols=206 Identities=21% Similarity=0.245 Sum_probs=165.4
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.+|++||.|.|.... --+..||+++ ++|+-+.++|+| |||||||+++|+|+.+| .+|+|++||+|
T Consensus 321 ~~lelrnvrfay~~~~-FhvgPiNl~i-----krGelvFliG~N-----GsGKST~~~LLtGL~~P---qsG~I~ldg~p 386 (546)
T COG4615 321 KTLELRNVRFAYQDNA-FHVGPINLTI-----KRGELVFLIGGN-----GSGKSTLAMLLTGLYQP---QSGEILLDGKP 386 (546)
T ss_pred cceeeeeeeeccCccc-ceecceeeEE-----ecCcEEEEECCC-----CCcHHHHHHHHhcccCC---CCCceeECCcc
Confidence 5689999999985443 3467889999 677788888887 79999999999999999 59999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
+++ ++|+-++-||-|..+|+.+=-.|+ ....+.++.+++++.|.+...-+-|+-.+-.
T Consensus 387 V~~e~ledYR~LfSavFsDyhLF~~ll~~e~---------------~as~q~i~~~LqrLel~~ktsl~d~~fs~~k--- 448 (546)
T COG4615 387 VSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG---------------KASPQLIEKWLQRLELAHKTSLNDGRFSNLK--- 448 (546)
T ss_pred CCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc---------------CCChHHHHHHHHHHHHhhhhcccCCcccccc---
Confidence 976 478888888888888775321111 0123456788888888664322222211233
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||.|||||+++-.||+-+-+|+++||=-+..||.=++...+.+--+-++.|+||+.+|||- .-+..+||++.+++|++
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~ 526 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQL 526 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCce
Confidence 9999999999999999999999999999999999999999888777777899999999994 56889999999999999
Q ss_pred EEec
Q psy2519 252 AFIG 255 (622)
Q Consensus 252 v~~G 255 (622)
++.-
T Consensus 527 ~e~t 530 (546)
T COG4615 527 SELT 530 (546)
T ss_pred eecc
Confidence 8754
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.91 E-value=4.4e-24 Score=210.80 Aligned_cols=159 Identities=23% Similarity=0.306 Sum_probs=119.7
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHh----CCCCCCCceeeEEEECCEecCc-cccccEEEEecCC-----CCCCCCCHH
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFL----SQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHD-----LFSPSLTVY 120 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~----g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q~~-----~l~~~lTV~ 120 (622)
+.++++|+| ||||||||++|. |...++ +|.+..+.+.+.. ..+..+++++|++ .....+|+.
T Consensus 23 g~~~i~G~N-----GsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 23 PLTLIVGQN-----GAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred CeEEEECCC-----CCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 467777776 899999999994 888773 5655422222222 3567899999987 345556888
Q ss_pred HHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHH------HHHHHHHhhCCCeEE
Q psy2519 121 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR------LSFATELLTDPALLL 194 (622)
Q Consensus 121 E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqR------vsIA~aL~~~P~lLl 194 (622)
||+.+.. .. .+++.+ ++.+++ ||+||||| ++||++++.+|++++
T Consensus 95 ~~~~~~~---------~~----~~~~~~---------~~~~~~--------LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 95 ENVIFCH---------QG----ESNWPL---------LDMRGR--------CSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred hceeeec---------hH----HHHHHH---------hcCccc--------cCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 8876531 11 122233 445444 99999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec-CC
Q psy2519 195 CDEPTTGLDSFSAS-KLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DS 249 (622)
Q Consensus 195 LDEPTsgLD~~~~~-~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~-~G 249 (622)
+||||++||+..+. .+.+.|++++++.|.|||++||++ + ..+.||+++.|. +|
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~-~-~~~~~d~i~~l~~~~ 199 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE-E-LVDAADHIYRVEKDG 199 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH-H-HHhhCCEEEEEeeCC
Confidence 99999999999999 999999999874489999999996 3 456899999995 44
No 381
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.90 E-value=3.8e-23 Score=250.93 Aligned_cols=137 Identities=28% Similarity=0.291 Sum_probs=114.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHHh---h
Q psy2519 113 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELL---T 188 (622)
Q Consensus 113 l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~---~ 188 (622)
.+...||.|+|.+.............+..+++ ++++.+||.+. .++.+.+ ||||||||++||++|+ .
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~t--------LSGGE~QRV~LAraL~~~~~ 829 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSS--------LSGGEIQRLKLAYELLAPSK 829 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcccc--------CCHHHHHHHHHHHHHhhcCC
Confidence 55678999999887653211111223445556 58899999876 6888766 9999999999999998 6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec------CCceEEecChHHHH
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA------DSRTAFIGSKDAAL 261 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 261 (622)
+|+++||||||+|||+.++.++++.|+++++ .|.|||+++|++ +.+ +.+|++++|. +|++++.|+++++.
T Consensus 830 ~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 830 KPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999987 699999999997 566 8999999996 78999999999875
No 382
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.90 E-value=8e-24 Score=210.50 Aligned_cols=193 Identities=13% Similarity=0.060 Sum_probs=130.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC-E-
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG-K- 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G-~- 94 (622)
.++++|+. +| .+. ..+++.. ..+++.++++|+| ||||||||++|++.+... ..+....+. .
T Consensus 5 ~i~l~nf~-~y-~~~----~~i~~~~----~~~~~~~~i~G~N-----GsGKSTll~~i~~~l~g~--~~~~~~~~~~~~ 67 (213)
T cd03279 5 KLELKNFG-PF-REE----QVIDFTG----LDNNGLFLICGPT-----GAGKSTILDAITYALYGK--TPRYGRQENLRS 67 (213)
T ss_pred EEEEECCc-Cc-CCc----eEEeCCC----CCccCEEEEECCC-----CCCHHHHHHHheeeEecC--ccccccchhHHH
Confidence 56677777 54 232 2333332 1235677777776 899999999999654211 133333221 1
Q ss_pred ecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 95 PVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 95 ~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.+.. ..+..+++++|++.... ++.+.. ..+.++..+.+ .++..++.+..++.+.+ ||
T Consensus 68 ~~~~~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~--------lS 125 (213)
T cd03279 68 VFAPGEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLARPVST--------LS 125 (213)
T ss_pred HhcCCCccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcCCccc--------cC
Confidence 1111 34667999999763211 222211 11222221111 23444455666777665 99
Q ss_pred hHHHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 174 GGERKRLSFATELLT----------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 174 gGqrqRvsIA~aL~~----------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||+++|++|+. +|++++|||||+|||+.++..+.+.++++++ +|.|+|++||++ +.+...+|++
T Consensus 126 ~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~-~~~~~~~~~i 203 (213)
T cd03279 126 GGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVE-ELKERIPQRL 203 (213)
T ss_pred HHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECch-HHHHhhCcEE
Confidence 999999999999985 5789999999999999999999999999986 589999999996 6788899999
Q ss_pred eeecCCc
Q psy2519 244 ILLADSR 250 (622)
Q Consensus 244 ~~L~~G~ 250 (622)
+++++|.
T Consensus 204 ~~~~~~~ 210 (213)
T cd03279 204 EVIKTPG 210 (213)
T ss_pred EEEecCC
Confidence 9999875
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.89 E-value=3e-22 Score=234.15 Aligned_cols=125 Identities=30% Similarity=0.393 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCC---Ce
Q psy2519 117 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP---AL 192 (622)
Q Consensus 117 lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P---~l 192 (622)
|||.|++.|...+.. ..+..+.++.+||.+ ..++.+.+ ||||||||+.||++|+.+| ++
T Consensus 792 ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~~~t--------LSgGEkQRl~LAraL~~~p~~~~l 854 (943)
T PRK00349 792 MTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQPATT--------LSGGEAQRVKLAKELSKRSTGKTL 854 (943)
T ss_pred CcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCCccc--------CCHHHHHHHHHHHHHhcCCCCCeE
Confidence 799999999765421 123457899999986 46777776 9999999999999999999 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHH
Q psy2519 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 261 (622)
Q Consensus 193 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 261 (622)
++|||||+|||+..+..+.+.|+++.+ .|.|||+++|++ +.+ +.+|+++.| ++|++++.|+++++.
T Consensus 855 lILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 855 YILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999999999999999999999999987 699999999997 455 689999999 799999999999875
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.88 E-value=8.5e-23 Score=224.79 Aligned_cols=197 Identities=23% Similarity=0.286 Sum_probs=155.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..+.++||+..-+.|. ..+++.++++ ++|+.+.|.|++ |||||||+|+|+|+-+-+ +|+|..-
T Consensus 391 ~~i~~~nl~l~~p~~~-~ll~~l~~~v-----~~G~~llI~G~S-----G~GKTsLlRaiaGLWP~g---~G~I~~P--- 453 (604)
T COG4178 391 HGITLENLSLRTPDGQ-TLLSELNFEV-----RPGERLLITGES-----GAGKTSLLRALAGLWPWG---SGRISMP--- 453 (604)
T ss_pred ceeEEeeeeEECCCCC-eeeccceeee-----CCCCEEEEECCC-----CCCHHHHHHHHhccCccC---CCceecC---
Confidence 5678899999876555 6789999999 678888888775 899999999999999875 7888653
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
....+-|+||.+.+... |.+|.+.++.... ..+ .+.+.++|.++||.+..++.-+. -..-+-||+|
T Consensus 454 ----~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~~----d~~l~~vL~~vgL~~L~~rl~~~--~~W~~vLS~G 519 (604)
T COG4178 454 ----ADSALLFLPQRPYLPQG-TLREALCYPNAAP---DFS----DAELVAVLHKVGLGDLAERLDEE--DRWDRVLSGG 519 (604)
T ss_pred ----CCCceEEecCCCCCCCc-cHHHHHhCCCCCC---CCC----hHHHHHHHHHcCcHHHHHHHhcc--CcHhhhcChh
Confidence 12457899999987666 9999998864332 122 23466889999998765543222 1233459999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||+++||.|+++|++++|||-|++||+.+...+.+.+++-. .+.|||.|.|.+ .+..+.++.+-+.
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccch--hhHHHHhhheeec
Confidence 9999999999999999999999999999999999999999854 479999999986 5667777765553
No 385
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=4.1e-22 Score=195.82 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=115.9
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-----cccccEEEEecCCCCCCCCCHHHHHH
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHLY 124 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~ 124 (622)
.+..+++|+| ||||||||.+|........ . ....|..... .....+.+++|+..+.+ |
T Consensus 21 ~gl~~i~G~N-----GsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------~-- 83 (198)
T cd03276 21 PRVNFIVGNN-----GSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------N-- 83 (198)
T ss_pred CCeEEEECCC-----CCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccC------C--
Confidence 4566777777 7999999999985433210 0 1111221111 12456888898776555 1
Q ss_pred HHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHH----hhCCCeEEEeCCCC
Q psy2519 125 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL----LTDPALLLCDEPTT 200 (622)
Q Consensus 125 f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL----~~~P~lLlLDEPTs 200 (622)
.. . ....++++++++. .+..++++++ ||+|||||++||++| +.+|++++|||||+
T Consensus 84 -----~~----~-~~~~~~~~~~l~~---~~~~~~~~~~--------lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~ 142 (198)
T cd03276 84 -----PL----C-VLSQDMARSFLTS---NKAAVRDVKT--------LSGGERSFSTVCLLLSLWEVMESPFRCLDEFDV 142 (198)
T ss_pred -----cC----C-HHHHHHHHHHhcc---ccccCCcccc--------cChhHHHHHHHHHHHHHhcccCCCEEEecCccc
Confidence 10 1 1123456777776 5667777666 999999999999999 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc--CCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 201 GLDSFSASKLIRMMRELTSQ--RKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 201 gLD~~~~~~i~~~l~~l~~~--~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||+..+..+.+.|++++++ .+.||++++|++ +++.+ +|+|.+|..|+
T Consensus 143 glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 143 FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-ccccc-ccceeEEEecC
Confidence 99999999999999998753 246899999997 56665 49999998764
No 386
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.87 E-value=1.1e-23 Score=206.86 Aligned_cols=209 Identities=29% Similarity=0.451 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q psy2519 346 TIIYVLISRSFLNVVRDPAIQ-LSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDM 424 (622)
Q Consensus 346 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~e 424 (622)
+|++.+++|+++..+|||... ..+++..+++++++|.+|.++ ++..++. ++.|.+++.+...++....+....+.+|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKL-GNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcc-ccccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 599999999999999999888 899999999999999999998 6444444 7788888888887766666665778899
Q ss_pred hhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy2519 425 LPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFS 504 (622)
Q Consensus 425 r~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~ 504 (622)
+..+.||+.++.|++.+|++|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..+++.++|.+++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~ 156 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFP 156 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999887 7788888888899999999999999999
Q ss_pred CHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHh
Q psy2519 505 SVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQW 558 (622)
Q Consensus 505 ~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef 558 (622)
+...+..+.+.+..++++++|.+.|.+++|+|++|+.|+||++|+.|++..++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 157 SFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999998876
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=3.1e-21 Score=225.24 Aligned_cols=125 Identities=29% Similarity=0.367 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHHHhh---CCC
Q psy2519 116 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLT---DPA 191 (622)
Q Consensus 116 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~---~P~ 191 (622)
.|||.|.+.|...+.. ..+..++++.+||.. ..++.+.+ |||||+||+.||++|+. +|+
T Consensus 789 ~~tv~e~~~f~~~~~~---------i~~~l~~L~~~gL~~l~l~~~~~t--------LSgGe~QRl~LA~aL~~~~~~p~ 851 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS---------ISRKLQTLCDVGLGYIKLGQPATT--------LSGGEAQRIKLAKELSKRSTGRT 851 (924)
T ss_pred CCcHHHHHHHHHhccc---------hhHHHHHHHHcCCCchhhcCcccc--------CCHHHHHHHHHHHHHhhcCCCCC
Confidence 4788888888754421 113457899999976 46777666 99999999999999997 599
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHH
Q psy2519 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 260 (622)
Q Consensus 192 lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 260 (622)
+++|||||+|||+..+..+.+.|+++.+ .|.|||+++|++ ..+ +.+|+++.| ++|++++.|+++++
T Consensus 852 llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 852 LYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999999987 699999999997 455 679999999 79999999998864
No 388
>KOG0927|consensus
Probab=99.87 E-value=4.7e-22 Score=211.85 Aligned_cols=200 Identities=22% Similarity=0.277 Sum_probs=155.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.+.+.||+|.|. ++.-+++++++-+ ..+.++.++||| |||||||||++.|.+.| ..|.|.-.-+
T Consensus 389 vi~~~nv~F~y~-~~~~iy~~l~fgi-----d~~srvAlVGPN-----G~GKsTLlKl~~gdl~p---~~G~vs~~~H-- 452 (614)
T KOG0927|consen 389 VIMVQNVSFGYS-DNPMIYKKLNFGI-----DLDSRVALVGPN-----GAGKSTLLKLITGDLQP---TIGMVSRHSH-- 452 (614)
T ss_pred eEEEeccccCCC-Ccchhhhhhhccc-----CcccceeEecCC-----CCchhhhHHHHhhcccc---cccccccccc--
Confidence 456789999984 3336778888877 567788899888 79999999999999999 5888864332
Q ss_pred CccccccEEEEecC--CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCccccC
Q psy2519 97 EGKFRSACGFMYQH--DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~~~r~~igyV~Q~--~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gLS 173 (622)
.++++--|+ +.+.-+.++.|++.=.. +.....+.+..++.++||. +..+.++++ ||
T Consensus 453 -----~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~~~--------LS 511 (614)
T KOG0927|consen 453 -----NKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPMSQ--------LS 511 (614)
T ss_pred -----ccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccchhh--------cc
Confidence 234444453 44556677777764322 1122345678999999998 455666666 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce-E
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT-A 252 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i-v 252 (622)
+|||+||.+|+.++..|.+|+|||||+|||..+...+.+.|.+. . -+||+++||. ..|.++++++.+..+|.+ .
T Consensus 512 ~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~-Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 512 DGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---P-GGVVLVSHDF-RLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred cccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---C-Cceeeeechh-hHHHHHHHHhHhhccCceee
Confidence 99999999999999999999999999999999999999999876 2 3799999996 689999999999988766 4
Q ss_pred EecChH
Q psy2519 253 FIGSKD 258 (622)
Q Consensus 253 ~~G~~~ 258 (622)
+.|+..
T Consensus 587 ~~G~i~ 592 (614)
T KOG0927|consen 587 WDGDIE 592 (614)
T ss_pred cCccHH
Confidence 556554
No 389
>KOG0927|consensus
Probab=99.87 E-value=6.7e-22 Score=210.69 Aligned_cols=227 Identities=20% Similarity=0.218 Sum_probs=157.4
Q ss_pred cccccceEEeecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC
Q psy2519 4 TASTSKTVILFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC 83 (622)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~ 83 (622)
+.++.+++-...+.+.++|+++++ -++.+++++.+++ .+|++..++|+| ||||||+|++|+|+..|..
T Consensus 62 ~~tg~l~s~~~s~dvk~~sls~s~--~g~~l~kd~~~El-----~~g~rygLiG~n-----G~Gkst~L~~i~~~e~P~p 129 (614)
T KOG0927|consen 62 SVTGNLFSHPISRDVKIESLSLSF--HGVELIKDVTLEL-----NRGRRYGLIGPN-----GSGKSTFLRAIAGREVPIP 129 (614)
T ss_pred hcccccccCcccccceeeeeeecc--CCceeeeeeeEEe-----cCCceEEEEcCC-----CCcHhHHHHHHhcCCCCCC
Confidence 556777888888999999999996 4567899999999 788899999887 7999999999999998832
Q ss_pred ceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHH-c-----------------CCCccccHHHHHHHHH
Q psy2519 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL-L-----------------KLDRRVKAYQRIALIN 145 (622)
Q Consensus 84 ~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~-l-----------------~~~~~~~~~~~~~~v~ 145 (622)
..=.++.-.+++.+...+.+-+|.+ +.-..+..+..... + +.. .+..+....++.
T Consensus 130 -~~~d~y~ls~e~~ps~~~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~-~~d~~~~~~k~~ 202 (614)
T KOG0927|consen 130 -EHIDFYLLSREIEPSEKQAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLD-EMDNDTFEAKAA 202 (614)
T ss_pred -cccchhhhcccCCCchHHHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHH-hhCchhHHHHHH
Confidence 1222333333332211111111110 00011111111100 0 000 011122334555
Q ss_pred HHHHHhCC-CcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCE
Q psy2519 146 SLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224 (622)
Q Consensus 146 ~~l~~lgL-~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~t 224 (622)
+++..+|- .+..++.+.+ +|||+|.|+++||+|..+|++|||||||++||..+..-+-+.|.+.-+ .+
T Consensus 203 ~il~glgf~~~m~~k~~~~--------~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~---~~ 271 (614)
T KOG0927|consen 203 KILHGLGFLSEMQDKKVKD--------LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR---II 271 (614)
T ss_pred HHHHhcCCCHhHHHHHhhc--------cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC---ce
Confidence 66766665 4456666665 999999999999999999999999999999999999999999887532 28
Q ss_pred EEEEeccCcHHHHhhccceeeecCCc-eEEecChHHHH
Q psy2519 225 VLCTIHQPSSELIDMFDKIILLADSR-TAFIGSKDAAL 261 (622)
Q Consensus 225 vi~~tH~~~~~i~~~~D~v~~L~~G~-iv~~G~~~~~~ 261 (622)
+|+++|. .+.+-..|.+|+-|.+++ +.|.|+-+...
T Consensus 272 lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 272 LVIVSHS-QDFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred EEEEecc-hhhhhhHhhhhheecccceeeecCCHHHHh
Confidence 9999998 578999999999999999 56677776543
No 390
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=6.1e-22 Score=188.14 Aligned_cols=228 Identities=17% Similarity=0.191 Sum_probs=171.1
Q ss_pred cccCCccccc--cccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCc-eeeEEEECCE
Q psy2519 18 EEVPNVDFSE--IVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCI-IDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~--~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~-~~G~I~~~G~ 94 (622)
+++.|++..+ +.|.+.+++++|+++ ..|+...++|. ||||||-.-|+|.|..+.+-. +.-+..+++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltl-----nEGEi~GLVGE-----SGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~i 73 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTL-----NEGEIRGLVGE-----SGSGKSLIAKAICGVNKDNWRVTADRMRFDDI 73 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeee-----ccceeeeeecc-----CCCchhHHHHHHhcccccceEEEhhhcccccc
Confidence 4566666554 357789999999999 45555555554 589999999999999886421 2334555665
Q ss_pred ecCc----c----ccccEEEEecCCC--CCCCCCHHHHHHHHHHc--CCCcccc-HHHHHHHHHHHHHHhCCCcccCCcc
Q psy2519 95 PVEG----K----FRSACGFMYQHDL--FSPSLTVYEHLYFMALL--KLDRRVK-AYQRIALINSLLIELGLMNSQHTRI 161 (622)
Q Consensus 95 ~~~~----~----~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l--~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~v 161 (622)
++-+ + +.+.|+++||++. |.|+-+|-..+.-..-. ..++.-. -.=+++++-++|.++|+.+..|-.-
T Consensus 74 dLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~ 153 (330)
T COG4170 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR 153 (330)
T ss_pred hhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence 5421 2 3466789999974 66766665444321111 0111000 0012445678999999988776443
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
. +|.+ |.-||-|+|.||.|++.+|++|+.||||+.+||.++.+++++|.++.+.+|+||++++||. ..+-+.||
T Consensus 154 S--YP~E---lTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d 227 (330)
T COG4170 154 S--YPYE---LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWAD 227 (330)
T ss_pred h--Ccch---hccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhh
Confidence 2 3666 9999999999999999999999999999999999999999999999998899999999996 68889999
Q ss_pred ceeeecCCceEEecChHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~ 261 (622)
++-+|.=|+-++.++.++++
T Consensus 228 ~i~VlYCGQ~~ESa~~e~l~ 247 (330)
T COG4170 228 KINVLYCGQTVESAPSEELV 247 (330)
T ss_pred heEEEEecccccccchhHHh
Confidence 99999999999999999886
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=3.4e-21 Score=195.95 Aligned_cols=180 Identities=15% Similarity=0.131 Sum_probs=115.0
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe-c-Cc-------cccccEEEEe--cCCC-CCCCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP-V-EG-------KFRSACGFMY--QHDL-FSPSLT 118 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~-~-~~-------~~r~~igyV~--Q~~~-l~~~lT 118 (622)
+..+|+|+| ||||||||++|++.+.+. .|++..++.+ + .. .....+..++ |++. ..-..+
T Consensus 23 ~~~~i~G~N-----GsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~ 94 (247)
T cd03275 23 RFTCIIGPN-----GSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRI 94 (247)
T ss_pred CeEEEECCC-----CCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEE
Confidence 356677777 899999999999988752 4655443321 0 00 0122333333 4321 111111
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCC---------ccCCcCC-----CCccccChHHHHHHHHHH
Q psy2519 119 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT---------RIGSSSI-----TQKVVLSGGERKRLSFAT 184 (622)
Q Consensus 119 V~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~v~~~~~-----~~~~gLSgGqrqRvsIA~ 184 (622)
+.+.... .... ....+ .+.++++++.+|+...... .+.+..| ..+..||||||||++||+
T Consensus 95 ~~~~~~~-~~in-gk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~ 168 (247)
T cd03275 95 ITGGSSS-YRIN-GKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALAL 168 (247)
T ss_pred EECCceE-EEEC-CEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHH
Confidence 1111100 0011 11111 2345688899998532111 1111111 112349999999999999
Q ss_pred HHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 185 ELLTD----PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 185 aL~~~----P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+++.+ |+++++||||+|||+..+..+.+.|+++++ .|.|||++||++ ++.+.||++++|.
T Consensus 169 al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~--~~~~~~d~i~~~~ 232 (247)
T cd03275 169 LFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKE--EFFSKADALVGVY 232 (247)
T ss_pred HHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCH--HHHhhCCeEEEEE
Confidence 99975 899999999999999999999999999986 599999999995 5678999999996
No 392
>KOG2355|consensus
Probab=99.83 E-value=3.2e-20 Score=176.04 Aligned_cols=211 Identities=18% Similarity=0.200 Sum_probs=157.4
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..+++.|+.|+|. ++-|++.+.|+.+ ..+....++|.| |||||||||+|+|..--+ .|.|.++|++
T Consensus 12 ~aievsgl~f~y~-~~dP~~~Dfnldl-----p~gsRcLlVGaN-----GaGKtTlLKiLsGKhmv~---~~~v~Vlgrs 77 (291)
T KOG2355|consen 12 FAIEVSGLQFKYK-VSDPIFFDFNLDL-----PAGSRCLLVGAN-----GAGKTTLLKILSGKHMVG---GGVVQVLGRS 77 (291)
T ss_pred ceEEEeccEEecc-cCCceEEEEeecc-----CCCceEEEEecC-----CCchhhhHHHhcCccccc---CCeEEEcCcC
Confidence 4578999999984 5558888999988 344455555555 899999999999976553 5899999987
Q ss_pred cCc---------------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCc
Q psy2519 96 VEG---------------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 160 (622)
Q Consensus 96 ~~~---------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 160 (622)
.-. ++++..+.-- +-.+-..+++++ +.|+..- ... + |-+++++.+++.-.. +
T Consensus 78 aFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~-mifgV~g-----~dp-~---Rre~LI~iLDIdl~W--R 144 (291)
T KOG2355|consen 78 AFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEH-MIFGVGG-----DDP-E---RREKLIDILDIDLRW--R 144 (291)
T ss_pred ccccccccccCceeEecccccccccccc-cccccccccHHH-HHhhccC-----CCh-h---HhhhhhhheeccceE--E
Confidence 521 2344444332 222334566655 4454321 111 2 335677777764322 1
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
... +|-|||+||.|++.|++--++|+|||-|-.||..++.++++.+++-++++|.|||..||-. +-++...
T Consensus 145 mHk--------vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wp 215 (291)
T KOG2355|consen 145 MHK--------VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWP 215 (291)
T ss_pred Eee--------ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcc
Confidence 222 9999999999999999999999999999999999999999999999998999999999985 5788999
Q ss_pred cceeeecCCceEEecChHHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~~ 262 (622)
.+++.+++|+++..-+.+++.+
T Consensus 216 thl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 216 THLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred hhEEEecCCeeeeccccchhhh
Confidence 9999999999997655554443
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=3.7e-20 Score=193.61 Aligned_cols=179 Identities=20% Similarity=0.204 Sum_probs=141.9
Q ss_pred eEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCC
Q psy2519 35 YAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 114 (622)
Q Consensus 35 l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~ 114 (622)
+.+..|++.-+.-..++...++|+| |-||||+.++|+|.++| ++|+ .. .-+++|=||--.--
T Consensus 352 ~g~F~L~V~~G~i~~gEvigilGpN-----giGKTTFvk~LAG~ikP---deg~----~~------~~~vSyKPQyI~~~ 413 (591)
T COG1245 352 YGDFKLEVEEGEIYDGEVIGILGPN-----GIGKTTFVKLLAGVIKP---DEGS----EE------DLKVSYKPQYISPD 413 (591)
T ss_pred cCceEEEecCCeeecceEEEEECCC-----CcchHHHHHHHhccccC---CCCC----Cc------cceEeecceeecCC
Confidence 3344555544444567788888887 79999999999999999 4776 11 23588888854434
Q ss_pred CCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEE
Q psy2519 115 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194 (622)
Q Consensus 115 ~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLl 194 (622)
...||++-+.-...-.... + -.-.++++-+.|++..++.+.+ |||||.|||+||.+|..+.++.+
T Consensus 414 ~~gtV~~~l~~~~~~~~~~--s-----~~~~ei~~pl~l~~i~e~~v~~--------LSGGELQRvaIaa~L~reADlYl 478 (591)
T COG1245 414 YDGTVEDLLRSAIRSAFGS--S-----YFKTEIVKPLNLEDLLERPVDE--------LSGGELQRVAIAAALSREADLYL 478 (591)
T ss_pred CCCcHHHHHHHhhhhhccc--c-----hhHHhhcCccchHHHHhccccc--------CCchhHHHHHHHHHhccccCEEE
Confidence 5679999876654322111 1 1234788899999999999887 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 195 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||++-||+..+..+.+.|+++..+.++|.+++.||. .-+--++||+++..
T Consensus 479 lDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 479 LDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred ecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 99999999999999999999999998899999999996 45666789988774
No 394
>KOG0062|consensus
Probab=99.82 E-value=2.6e-20 Score=197.66 Aligned_cols=199 Identities=25% Similarity=0.308 Sum_probs=137.5
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
.+++.+.. +|++..|.+-+|++ ..|....++|+| |+|||||||+|+. |+|. |-++.+
T Consensus 82 ~~~~fdLa--~G~k~LL~~a~L~L-----~~GrRYGLvGrN-----G~GKsTLLRaia~---------~~v~--~f~veq 138 (582)
T KOG0062|consen 82 HIDNFDLA--YGGKILLNKANLTL-----SRGRRYGLVGRN-----GIGKSTLLRAIAN---------GQVS--GFHVEQ 138 (582)
T ss_pred eeeeeeee--ecchhhhcCCceee-----ecccccceeCCC-----CCcHHHHHHHHHh---------cCcC--ccCchh
Confidence 34455555 58888999999999 455677778787 7999999999995 3332 222222
Q ss_pred cccccEEEEecC-CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHH
Q psy2519 99 KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 99 ~~r~~igyV~Q~-~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGq 176 (622)
+.+- -+++-. +.+....++.+-+.--..+.. ..+..+..+++|..+|.++. ..+++++ ||||-
T Consensus 139 E~~g--~~t~~~~~~l~~D~~~~dfl~~e~~l~~-----~~~l~ei~~~~L~glGFt~emq~~pt~s--------lSGGW 203 (582)
T KOG0062|consen 139 EVRG--DDTEALQSVLESDTERLDFLAEEKELLA-----GLTLEEIYDKILAGLGFTPEMQLQPTKS--------LSGGW 203 (582)
T ss_pred heec--cchHHHhhhhhccHHHHHHHHhhhhhhc-----cchHHHHHHHHHHhCCCCHHHHhccccc--------cCcch
Confidence 2221 122221 233334333332222111110 00233344458899999654 4566666 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce-EEec
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT-AFIG 255 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i-v~~G 255 (622)
|-|+++||||..+|++|||||||+.||..+..-+.+.|... +.|+|+|+|| +..+-+.|..|+-+++-++ .|.|
T Consensus 204 rMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkG 278 (582)
T KOG0062|consen 204 RMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKG 278 (582)
T ss_pred hhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcC
Confidence 99999999999999999999999999999999999998874 4799999999 6888899999998887666 4456
Q ss_pred ChHHH
Q psy2519 256 SKDAA 260 (622)
Q Consensus 256 ~~~~~ 260 (622)
.-++.
T Consensus 279 N~~~F 283 (582)
T KOG0062|consen 279 NYSQF 283 (582)
T ss_pred cHHHH
Confidence 55543
No 395
>KOG0062|consensus
Probab=99.81 E-value=1e-19 Score=193.16 Aligned_cols=198 Identities=22% Similarity=0.234 Sum_probs=153.8
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.++++.+|+|.|..++.+.+..+++.+. ...+...+|.| |+||||+++++.|-+.| .+|.+-+.+
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e-----~~sRi~~vg~n-----g~gkst~lKi~~~~l~~---~rgi~~~~~-- 425 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRE-----SDSRISRVGEN-----GDGKSTLLKILKGDLTP---TRGIVGRHP-- 425 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccc-----hhhhhheeccC-----chhHHHHHHHHhccCCc---ccceeeecc--
Confidence 5677888999986666578888888773 44466777777 79999999999998887 478776654
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccCh
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSg 174 (622)
|.+++|-+|...=+-.++|-+- .+-.+.+-+ .. ++.+++-+..+||.. .+...+.+ |||
T Consensus 426 -----r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~pG--~~----~ee~r~hl~~~Gl~g~la~~si~~--------LSG 485 (582)
T KOG0062|consen 426 -----RLRIKYFAQHHVDFLDKNVNAV-DFMEKSFPG--KT----EEEIRRHLGSFGLSGELALQSIAS--------LSG 485 (582)
T ss_pred -----cceecchhHhhhhHHHHHhHHH-HHHHHhCCC--CC----HHHHHHHHHhcCCCchhhhccccc--------cCC
Confidence 5789999997543334444432 333333321 22 234567889999964 44554555 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
|||-||++|.....+|.+|+|||||+-||-.+-..+.+.|+.+. | .||+|||| .+.+...|+.+++.++|++.-
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---G-GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN---G-GVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC---C-cEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999999999999999999873 3 59999999 478999999999999999965
No 396
>KOG0060|consensus
Probab=99.80 E-value=6.9e-19 Score=189.09 Aligned_cols=210 Identities=17% Similarity=0.153 Sum_probs=153.5
Q ss_pred ecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 14 FKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
-++.+++++|+++-+..+..+.+++|+.| +.|..++|.+| ||||||+|||+|+|+-+- .+|++.--.
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V------~~g~~LLItG~----sG~GKtSLlRvlggLWp~---~~G~l~k~~ 496 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEV------PSGQNLLITGP----SGCGKTSLLRVLGGLWPS---TGGKLTKPT 496 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEe------cCCCeEEEECC----CCCchhHHHHHHhccccc---CCCeEEecc
Confidence 34778999999998764555678899999 45555666555 499999999999999986 489987543
Q ss_pred EecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc------CCccCCcCCC
Q psy2519 94 KPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ------HTRIGSSSIT 167 (622)
Q Consensus 94 ~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~------~~~v~~~~~~ 167 (622)
+.- .+.+-||||.|.+.-. |.||.+.|+.+--.+ .++....+++.+.|+.++|.|.. |+.+...|-.
T Consensus 497 ~~~----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~d 569 (659)
T KOG0060|consen 497 DGG----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMD 569 (659)
T ss_pred cCC----CCceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHh
Confidence 321 1568899999876555 999999997432211 11111234556677777666533 3333333333
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
. ||+||+||+++||-+.++|++-+|||-||++|......+.+.+++ .|+|.|-|.|.. .+.+.=|.++-|+
T Consensus 570 v---LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRk--SL~kfHd~~L~~~ 640 (659)
T KOG0060|consen 570 V---LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRK--SLWKFHDYVLRMD 640 (659)
T ss_pred h---cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHH--HHHhhhhEEEEec
Confidence 3 999999999999999999999999999999999888777776654 699999999975 5667778888886
Q ss_pred C-CceE
Q psy2519 248 D-SRTA 252 (622)
Q Consensus 248 ~-G~iv 252 (622)
. |+..
T Consensus 641 g~g~w~ 646 (659)
T KOG0060|consen 641 GRGSWR 646 (659)
T ss_pred CCCceE
Confidence 3 4443
No 397
>KOG0066|consensus
Probab=99.79 E-value=3.3e-19 Score=184.88 Aligned_cols=188 Identities=26% Similarity=0.352 Sum_probs=145.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.+-+.||+|.| .|..+.+..+++-+ .-...++|+||| |.||||||++|.|.+.|+ .|+..=|
T Consensus 586 vLGlH~VtFgy-~gqkpLFkkldFGi-----DmdSRiaIVGPN-----GVGKSTlLkLL~Gkl~P~---~GE~RKn---- 647 (807)
T KOG0066|consen 586 VLGLHDVTFGY-PGQKPLFKKLDFGI-----DMDSRIAIVGPN-----GVGKSTLLKLLIGKLDPN---DGELRKN---- 647 (807)
T ss_pred eeecccccccC-CCCCchhhcccccc-----cccceeEEECCC-----CccHHHHHHHHhcCCCCC---cchhhcc----
Confidence 34578999998 58889999999877 334578888887 799999999999999994 6776432
Q ss_pred CccccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCc-cCCcCCCCccccC
Q psy2519 97 EGKFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR-IGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-v~~~~~~~~~gLS 173 (622)
.|-+||+.-|+. .|-..-|..|.|.-. +.+ +.. .++..|..+||...+++. +.+ ||
T Consensus 648 ---hrL~iG~FdQh~~E~L~~Eetp~EyLqr~--FNl----pyq----~ARK~LG~fGL~sHAHTikikd--------LS 706 (807)
T KOG0066|consen 648 ---HRLRIGWFDQHANEALNGEETPVEYLQRK--FNL----PYQ----EARKQLGTFGLASHAHTIKIKD--------LS 706 (807)
T ss_pred ---ceeeeechhhhhHHhhccccCHHHHHHHh--cCC----ChH----HHHHHhhhhhhhhccceEeeee--------cC
Confidence 345789988863 566666777766432 222 222 234678999998888764 444 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||-||++|.--+..|+||||||||++||..+...+.+.|++.. -.||+|+||. ..+.+.-..++++.+
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~----GgVi~VsHDe-RLi~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN----GGVIMVSHDE-RLIVETDCNLWVVEN 776 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc----CcEEEEeccc-ceeeecCceEEEEcc
Confidence 999999999999999999999999999999999999999998863 3699999995 455555556666654
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.78 E-value=8.6e-19 Score=174.15 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=66.8
Q ss_pred cChHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-CEEEEEeccCcHHHHhhcc--cee
Q psy2519 172 LSGGERKRLSFATEL----LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK-KTVLCTIHQPSSELIDMFD--KII 244 (622)
Q Consensus 172 LSgGqrqRvsIA~aL----~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g-~tvi~~tH~~~~~i~~~~D--~v~ 244 (622)
||||||||+.++++| +.+|+++++||||+|||+.++..+.+.+++++++.| .|+|++||++ .++.+.+| +++
T Consensus 127 LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~-~~~~~~~~~~~v~ 205 (213)
T cd03277 127 QSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKL-LPGLNYHEKMTVL 205 (213)
T ss_pred ccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh-ccCCcccCceEEE
Confidence 999999998877554 589999999999999999999999999999987425 5899999996 45666776 788
Q ss_pred eecCCc
Q psy2519 245 LLADSR 250 (622)
Q Consensus 245 ~L~~G~ 250 (622)
+|++|+
T Consensus 206 ~l~~g~ 211 (213)
T cd03277 206 CVYNGP 211 (213)
T ss_pred EEecCc
Confidence 888886
No 399
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.77 E-value=1.9e-18 Score=202.41 Aligned_cols=137 Identities=24% Similarity=0.380 Sum_probs=113.4
Q ss_pred CCCCCCHHHHHHHHHHcCCCcc---c---cHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 113 FSPSLTVYEHLYFMALLKLDRR---V---KAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 113 l~~~lTV~E~l~f~~~l~~~~~---~---~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
-+..+||.|.+.|.-.+..+.. . -..+..++++ .++.+||.+. .|+.+.+ |||||||||.||++
T Consensus 433 ~~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~--------LSgGE~QRv~LA~a 503 (943)
T PRK00349 433 EVSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGT--------LSGGEAQRIRLATQ 503 (943)
T ss_pred HHhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhh--------CCHHHHHHHHHHHH
Confidence 3567899999999654433211 0 0123345554 7889999876 7888877 99999999999999
Q ss_pred HhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecCh
Q psy2519 186 LLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSK 257 (622)
Q Consensus 186 L~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~ 257 (622)
|..+| ++++|||||+|||+..+.++.+.|+++++ .|.|||+++|++ +++ ..||+|++| ++|++++.|++
T Consensus 504 L~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~-~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~ 580 (943)
T PRK00349 504 IGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDE-DTI-RAADYIVDIGPGAGVHGGEVVASGTP 580 (943)
T ss_pred HhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHH-HhCCEEEEeccccCCCCCEEeeccCH
Confidence 99997 99999999999999999999999999986 699999999996 455 469999999 99999999999
Q ss_pred HHHH
Q psy2519 258 DAAL 261 (622)
Q Consensus 258 ~~~~ 261 (622)
+++.
T Consensus 581 ~e~~ 584 (943)
T PRK00349 581 EEIM 584 (943)
T ss_pred HHHh
Confidence 9874
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.77 E-value=1.3e-18 Score=171.32 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=72.5
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
+|+||||++.|+++ +.+|+++++|||++|||+..+..+. ..++++.+ .|.|+|++||+. ++.+.+|++..+++|+
T Consensus 92 fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~--~l~~~~d~~~~l~~g~ 167 (200)
T cd03280 92 FSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYG--ELKAYAYKREGVENAS 167 (200)
T ss_pred HHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHH--HHHHHHhcCCCeEEEE
Confidence 99999999999988 4899999999999999999999996 57888876 689999999983 6789999999999999
Q ss_pred eEEec
Q psy2519 251 TAFIG 255 (622)
Q Consensus 251 iv~~G 255 (622)
+++++
T Consensus 168 l~~~~ 172 (200)
T cd03280 168 MEFDP 172 (200)
T ss_pred EEEec
Confidence 99874
No 401
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=3.3e-18 Score=200.01 Aligned_cols=136 Identities=26% Similarity=0.381 Sum_probs=110.4
Q ss_pred CCCCCHHHHHHHHHHcCCCccccH------HHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHH
Q psy2519 114 SPSLTVYEHLYFMALLKLDRRVKA------YQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATEL 186 (622)
Q Consensus 114 ~~~lTV~E~l~f~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL 186 (622)
+-.|||.|.+.|...+.......+ .+..+++ +.+..+||... .++.+.+ |||||+|||.||++|
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~t--------LSGGE~QRv~LA~aL 502 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGT--------LSGGEAQRIRLATQI 502 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCc--------CCHHHHHHHHHHHHH
Confidence 357899999999876543211000 1222233 34778898765 6777777 999999999999999
Q ss_pred hhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChH
Q psy2519 187 LTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKD 258 (622)
Q Consensus 187 ~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~ 258 (622)
+.+| ++++|||||+|||+..+..+.+.|+++++ .|.|||+++|++ +.+ ..||++++| ++|++++.|+++
T Consensus 503 ~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~ 579 (924)
T TIGR00630 503 GSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPE 579 (924)
T ss_pred hhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHH
Confidence 9986 89999999999999999999999999987 699999999996 455 589999999 899999999998
Q ss_pred HHH
Q psy2519 259 AAL 261 (622)
Q Consensus 259 ~~~ 261 (622)
++.
T Consensus 580 el~ 582 (924)
T TIGR00630 580 EIL 582 (924)
T ss_pred HHh
Confidence 874
No 402
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=2.3e-17 Score=183.27 Aligned_cols=127 Identities=31% Similarity=0.420 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc-CCccCCcCCCCccccChHHHHHHHHHHHHhhCC---C
Q psy2519 116 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-HTRIGSSSITQKVVLSGGERKRLSFATELLTDP---A 191 (622)
Q Consensus 116 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P---~ 191 (622)
.|||.|...|+... + ...+.-+.|..+||.-.. -+...+ |||||.|||-+|.+|..+. -
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~LGQpatT--------LSGGEaQRvKLA~EL~k~~tg~T 845 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIKLGQPATT--------LSGGEAQRVKLAKELSKRSTGKT 845 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEecCCcccc--------ccchHHHHHHHHHHHhhccCCCe
Confidence 58899998887532 1 122344678889997542 333333 9999999999999999877 8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHHH
Q psy2519 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAALA 262 (622)
Q Consensus 192 lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 262 (622)
+.+|||||+||......++++.|.+|.+ .|.|||++.|++ ++.+.||.|+=| ..|+|++.|+|+++.+
T Consensus 846 lYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 846 LYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999998 799999999997 677899999999 4589999999999864
No 403
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.73 E-value=4e-18 Score=178.48 Aligned_cols=169 Identities=24% Similarity=0.278 Sum_probs=122.9
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE-----------EECCEecCccc------cccEEEEecC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI-----------RVNGKPVEGKF------RSACGFMYQH 110 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I-----------~~~G~~~~~~~------r~~igyV~Q~ 110 (622)
.+|+.+.++|+| |-||||-+|+|+|.++|+. |+- .+.|.++..-+ .-++..=+|-
T Consensus 98 r~G~V~GilG~N-----GiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QY 169 (591)
T COG1245 98 RPGKVVGILGPN-----GIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQY 169 (591)
T ss_pred CCCcEEEEEcCC-----CccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHH
Confidence 456677777777 7999999999999999963 321 11111111100 0111222231
Q ss_pred ----CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHH
Q psy2519 111 ----DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186 (622)
Q Consensus 111 ----~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL 186 (622)
+..+-. ||.|-|.- ...+-+.+++++.++|++..|+.+.+ |||||-||++||.++
T Consensus 170 Vd~iPk~~KG-~v~elLk~------------~de~g~~devve~l~L~nvl~r~v~~--------LSGGELQr~aIaa~l 228 (591)
T COG1245 170 VDLIPKVVKG-KVGELLKK------------VDERGKFDEVVERLGLENVLDRDVSE--------LSGGELQRVAIAAAL 228 (591)
T ss_pred HHHHHHHhcc-hHHHHHHh------------hhhcCcHHHHHHHhcchhhhhhhhhh--------cCchHHHHHHHHHHH
Confidence 111111 44443321 11223567899999999999999888 999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 187 ~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+.+.+++++|||||-||...+....+.++++++ .+++||++.||+ ..+--++|-|.++.
T Consensus 229 ~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~-~~k~ViVVEHDL-avLD~lsD~vhI~Y 287 (591)
T COG1245 229 LRDADVYFFDEPSSYLDIRQRLNAARVIRELAE-DGKYVIVVEHDL-AVLDYLSDFVHILY 287 (591)
T ss_pred hccCCEEEEcCCcccccHHHHHHHHHHHHHHhc-cCCeEEEEechH-HHHHHhhheeEEEe
Confidence 999999999999999999999999999999997 599999999996 45555678888875
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.70 E-value=1.6e-16 Score=153.49 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=68.1
Q ss_pred cChHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 172 LSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||||||+++|++|+ .+|+++++|||+++||+..+..+.+.++++++ .|.|+|++||++ +..+.+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~--~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKK--EMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH--HHHhhCCeEEEEE
Confidence 9999999999999997 69999999999999999999999999999987 589999999996 4557899999996
Q ss_pred C
Q psy2519 248 D 248 (622)
Q Consensus 248 ~ 248 (622)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 4
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.69 E-value=4.9e-17 Score=159.90 Aligned_cols=147 Identities=16% Similarity=0.101 Sum_probs=102.9
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 111 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~ 111 (622)
..+++++++.. ++.+++.|+| |||||||||+|+|... +...|.++.. -.+++|.+
T Consensus 14 ~~v~n~i~l~~-------g~~~~ltGpN-----g~GKSTllr~i~~~~~--------l~~~G~~v~a-----~~~~~q~~ 68 (199)
T cd03283 14 KRVANDIDMEK-------KNGILITGSN-----MSGKSTFLRTIGVNVI--------LAQAGAPVCA-----SSFELPPV 68 (199)
T ss_pred CeecceEEEcC-------CcEEEEECCC-----CCChHHHHHHHHHHHH--------HHHcCCEEec-----CccCcccc
Confidence 34566666543 4566666666 8999999999987542 1124544432 13677878
Q ss_pred CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC
Q psy2519 112 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191 (622)
Q Consensus 112 ~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~ 191 (622)
.+++.+|+.||+.++... ...+ .+++.++++.+++ .+|+
T Consensus 69 ~l~~~~~~~d~l~~~~s~------~~~e-~~~~~~iL~~~~~----------------------------------~~p~ 107 (199)
T cd03283 69 KIFTSIRVSDDLRDGISY------FYAE-LRRLKEIVEKAKK----------------------------------GEPV 107 (199)
T ss_pred eEEEeccchhccccccCh------HHHH-HHHHHHHHHhccC----------------------------------CCCe
Confidence 899999999999875421 1122 2557777776642 5799
Q ss_pred eEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHhh--ccceeee
Q psy2519 192 LLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDM--FDKIILL 246 (622)
Q Consensus 192 lLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~~--~D~v~~L 246 (622)
++++|||++|+|+..+..+. .+++++++ .|.|+|++||++ +.+... .+++-.+
T Consensus 108 llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 108 LFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred EEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 99999999999999998875 47888876 689999999996 455443 3444443
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.69 E-value=2.1e-16 Score=192.73 Aligned_cols=136 Identities=28% Similarity=0.410 Sum_probs=108.8
Q ss_pred CCCCCHHHHHHHHHHcCCCcccc---HHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHHhhC
Q psy2519 114 SPSLTVYEHLYFMALLKLDRRVK---AYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189 (622)
Q Consensus 114 ~~~lTV~E~l~f~~~l~~~~~~~---~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~ 189 (622)
+..|++.|-+.|...+....... -++..+|. +.|..+||.+. .++.+++ |||||+|||.||++|..+
T Consensus 424 ~~~m~i~~l~~~~~~l~~~~~~~~~il~ei~~RL-~~L~~vGL~~L~ldR~~~t--------LSGGE~QRV~LAraL~~~ 494 (1809)
T PRK00635 424 FQQMSLQELFIFLSQLPSKSLSIEEVLQGLKSRL-SILIDLGLPYLTPERALAT--------LSGGEQERTALAKHLGAE 494 (1809)
T ss_pred HhcCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHhccccCCCCCCchhh--------CCHHHHHHHHHHHHHhcC
Confidence 34678888888876553100000 11222333 34567899876 6788777 999999999999999999
Q ss_pred C--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec------CCceEEecChHHHH
Q psy2519 190 P--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA------DSRTAFIGSKDAAL 261 (622)
Q Consensus 190 P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 261 (622)
| ++++|||||+|||+.++..+.++|+++++ .|.|||+|+|++ + +.+.||++++|. +|++++.|+++++.
T Consensus 495 p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~-~G~TVIvVeHd~-~-vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil 571 (1809)
T PRK00635 495 LIGITYILDEPSIGLHPQDTHKLINVIKKLRD-QGNTVLLVEHDE-Q-MISLADRIIDIGPGAGIFGGEVLFNGSPREFL 571 (1809)
T ss_pred CCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-H-HHHhCCEEEEEcCCcccCCCEEEEecCHHHHh
Confidence 9 89999999999999999999999999987 699999999996 3 678999999996 78999999988763
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1e-16 Score=165.76 Aligned_cols=76 Identities=30% Similarity=0.466 Sum_probs=68.5
Q ss_pred ccChHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 171 VLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
.||||||||+++|++++. +|+++++||||++||+.....+.+.++++++ +.|+|++||++ .+.+.+|+++.+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~--~~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLP--QVAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechH--HHHHhcCcEEEE
Confidence 399999999999997664 9999999999999999999999999999864 68999999997 356899999999
Q ss_pred cCCc
Q psy2519 247 ADSR 250 (622)
Q Consensus 247 ~~G~ 250 (622)
.+|+
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8764
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.68 E-value=4.9e-17 Score=162.57 Aligned_cols=154 Identities=21% Similarity=0.176 Sum_probs=108.5
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEE-EEec
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACG-FMYQ 109 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~ig-yV~Q 109 (622)
...+..++++.. .+++.+++.|+| |+||||||++++-. .+..++| |||.
T Consensus 16 ~~~v~~~~~~~~-----~~~~~~~l~G~n-----~~GKstll~~i~~~--------------------~~la~~g~~vpa 65 (222)
T cd03285 16 VAFIPNDVTLTR-----GKSRFLIITGPN-----MGGKSTYIRQIGVI--------------------VLMAQIGCFVPC 65 (222)
T ss_pred CCeEEeeEEEee-----cCCeEEEEECCC-----CCChHHHHHHHHHH--------------------HHHHHhCCCcCc
Confidence 345677777776 234444555555 89999999999811 1112333 5555
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHH--h
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL--L 187 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL--~ 187 (622)
+...++ .++++++.+++.+.. .. ++|.||++++.+++++ +
T Consensus 66 ~~~~~~---------------------------~~~~il~~~~l~d~~---~~--------~lS~~~~e~~~~a~il~~~ 107 (222)
T cd03285 66 DSADIP---------------------------IVDCILARVGASDSQ---LK--------GVSTFMAEMLETAAILKSA 107 (222)
T ss_pred ccEEEe---------------------------ccceeEeeeccccch---hc--------CcChHHHHHHHHHHHHHhC
Confidence 432221 123455566665432 22 3999999999999999 8
Q ss_pred hCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecC
Q psy2519 188 TDPALLLCDEP---TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 188 ~~P~lLlLDEP---TsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
.+|+++||||| |++||+.+... ..++.+.++.|.++|++||+ .++.+++|++..+++|++...++
T Consensus 108 ~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 108 TENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 99999999999 99999988864 34455554358999999997 47889999999999999988764
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.65 E-value=7.1e-16 Score=146.79 Aligned_cols=74 Identities=31% Similarity=0.423 Sum_probs=67.9
Q ss_pred cChHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 172 LSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||+||+||+++|++|+. +|+++++|||++|+|+..+..+.+.+.+..++ |.++|++||++ ++.+.+|+++.|.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 99999999999999997 78999999999999999999999999998874 89999999996 5567899999985
Q ss_pred C
Q psy2519 248 D 248 (622)
Q Consensus 248 ~ 248 (622)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
No 410
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.62 E-value=2.8e-15 Score=155.63 Aligned_cols=185 Identities=21% Similarity=0.273 Sum_probs=133.7
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-----CceeeEEEECCEecCccccccEE
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD-----CIIDGDIRVNGKPVEGKFRSACG 105 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~-----~~~~G~I~~~G~~~~~~~r~~ig 105 (622)
...+|+|+||.+ ++|+..++.|+ |||||||+|++|.|....- ..++|.|.+--.. ..+
T Consensus 395 eryvlr~vNL~i-----kpGdvvaVvGq-----SGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a 457 (593)
T COG2401 395 ERYVLRNLNLEI-----KPGDVVAVVGQ-----SGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSA 457 (593)
T ss_pred eeeeeeceeeEe-----cCCCeEEEEec-----CCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhh
Confidence 456899999999 56666666655 5899999999999975421 0146777653221 223
Q ss_pred EEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc--CCccCCcCCCCccccChHHHHHHHH
Q psy2519 106 FMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ--HTRIGSSSITQKVVLSGGERKRLSF 182 (622)
Q Consensus 106 yV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~v~~~~~~~~~gLSgGqrqRvsI 182 (622)
.+|-+. .-+..-|+.|++.-- .. + ...+.++|++.||.+.. .... ++ ||-|||.|+.|
T Consensus 458 ~iPge~Ep~f~~~tilehl~s~--tG-----D----~~~AveILnraGlsDAvlyRr~f-----~E---LStGQKeR~KL 518 (593)
T COG2401 458 LIPGEYEPEFGEVTILEHLRSK--TG-----D----LNAAVEILNRAGLSDAVLYRRKF-----SE---LSTGQKERAKL 518 (593)
T ss_pred ccCcccccccCchhHHHHHhhc--cC-----c----hhHHHHHHHhhccchhhhhhccH-----hh---cCcchHHHHHH
Confidence 445432 223345666654211 10 0 12245899999997643 2332 33 99999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh-ccceeeecCCceE
Q psy2519 183 ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTA 252 (622)
Q Consensus 183 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~-~D~v~~L~~G~iv 252 (622)
|..+..+|.+++.||=.+-||+.++..+.+-|.+++++.|.|++++||.| +.+-.+ -|+++++.=|+..
T Consensus 519 Akllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 519 AKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 99999999999999999999999999999999999998899999999997 455555 4888888766554
No 411
>KOG0064|consensus
Probab=99.61 E-value=4e-16 Score=165.81 Aligned_cols=198 Identities=18% Similarity=0.184 Sum_probs=136.0
Q ss_pred eecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 13 LFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+..+-+.++||-..-+.|++ +....++.+ ++|-...|.||| |||||+|.|+|+|+-+- ..|....
T Consensus 477 ~~~~gI~lenIpvItP~~~v-vv~~Ltf~i-----~~G~hLLItGPN-----GCGKSSLfRILggLWPv---y~g~L~~- 541 (728)
T KOG0064|consen 477 RNFNGIILENIPVITPAGDV-LVPKLTFQI-----EPGMHLLITGPN-----GCGKSSLFRILGGLWPV---YNGLLSI- 541 (728)
T ss_pred hcccceEEecCceeccCcce-eecceeEEe-----cCCceEEEECCC-----CccHHHHHHHHhccCcc---cCCeeec-
Confidence 33345778888888766765 567777777 678888888888 79999999999999874 2444432
Q ss_pred CEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcC--CCccccHHHHHHHHHHHHHHhCCCcccCCccCC-cCCCCc
Q psy2519 93 GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRIGS-SSITQK 169 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~-~~~~~~ 169 (622)
..+.++-|+||.|.+- .-|.+|.+.++-... ..+...+ +....+|+.+.|++...+-.|= ..-...
T Consensus 542 ------P~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWk 610 (728)
T KOG0064|consen 542 ------PRPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWK 610 (728)
T ss_pred ------CCCcceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHH
Confidence 1245699999998765 558888887643110 0011122 2344566666665543332210 000112
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
--||||||||+++||..-++|+.-+|||-||+..+.....+.+..++ .|.+.+-+||.|+ .++.-..
T Consensus 611 d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrps--lwk~h~~ 677 (728)
T KOG0064|consen 611 DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPS--LWKYHTH 677 (728)
T ss_pred hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCcc--HHHHHHH
Confidence 23999999999999999999999999999999988777777666543 6999999999984 4554333
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=2.9e-14 Score=147.06 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=61.6
Q ss_pred cChHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc--
Q psy2519 172 LSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-- 240 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~-- 240 (622)
+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.++++. . +++++|+. ..+.+.|
T Consensus 184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q-~ii~~~~~-~~~~~~~~~ 257 (270)
T cd03242 184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----Q-TFVTTTDL-ADFDALWLR 257 (270)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----C-EEEEeCCc-hhccchhcc
Confidence 8999999999999986 6999999999999999999999999998752 3 45555543 3666676
Q ss_pred -cceeeecCCce
Q psy2519 241 -DKIILLADSRT 251 (622)
Q Consensus 241 -D~v~~L~~G~i 251 (622)
++++.+++|++
T Consensus 258 ~~~i~~l~~g~i 269 (270)
T cd03242 258 RAQIFRVDAGTL 269 (270)
T ss_pred CccEEEEeCcEE
Confidence 78999999985
No 413
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.57 E-value=7.4e-15 Score=144.89 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=70.2
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~-~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
++++++| ++.+.+++.+|+++++||||+|+|+.....+.. +++.+.+ .+.++|++||++ ++.+.+|++..++.|+
T Consensus 92 ~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~--~~~~~~~~~~~l~~~~ 167 (202)
T cd03243 92 FMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFH--ELADLPEQVPGVKNLH 167 (202)
T ss_pred HHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChH--HHHHHhhcCCCeEEEE
Confidence 7776665 666688889999999999999999999988765 5666665 689999999985 6677899999999999
Q ss_pred eEEecChHH
Q psy2519 251 TAFIGSKDA 259 (622)
Q Consensus 251 iv~~G~~~~ 259 (622)
+...+...+
T Consensus 168 ~~~~~~~~~ 176 (202)
T cd03243 168 MEELITTGG 176 (202)
T ss_pred EEEEecCCe
Confidence 998886543
No 414
>KOG0063|consensus
Probab=99.53 E-value=5.6e-14 Score=146.45 Aligned_cols=184 Identities=22% Similarity=0.252 Sum_probs=137.1
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecC
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 110 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~ 110 (622)
.+.-+.+..|.+..|.-...+..+.+|.| |-||||++++++|+++|+ ..|+|-. -.++|=||.
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEn-----gtgkTTfi~mlag~~~pd--~~~e~p~----------lnVSykpqk 410 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGEN-----GTGKTTFIRMLAGRLKPD--EGGEIPV----------LNVSYKPQK 410 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccC-----CcchhHHHHHHhcCCCCC--ccCcccc----------cceeccccc
Confidence 34456677777766665555566667666 799999999999999995 3455532 246677775
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCC
Q psy2519 111 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190 (622)
Q Consensus 111 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P 190 (622)
-.--..-||++.+.- +.+ +......-+.++++-|.+++..|+-+.+ |||||+|||++|..|=...
T Consensus 411 ispK~~~tvR~ll~~--kIr-----~ay~~pqF~~dvmkpL~ie~i~dqevq~--------lSggelQRval~KOGGKpA 475 (592)
T KOG0063|consen 411 ISPKREGTVRQLLHT--KIR-----DAYMHPQFVNDVMKPLQIENIIDQEVQG--------LSGGELQRVALALCLGKPA 475 (592)
T ss_pred cCccccchHHHHHHH--HhH-----hhhcCHHHHHhhhhhhhHHHHHhHHhhc--------CCchhhHHHHHHHhcCCCC
Confidence 433334588876533 222 1122234567888888888888887766 9999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 191 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 191 ~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
++.+.|||.+-||+..+..--+.++++--+.++|-.+|.||.. -.--++||+++..
T Consensus 476 dvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 476 DVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred ceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 9999999999999999999999999986546899999999963 2334688887663
No 415
>KOG0066|consensus
Probab=99.52 E-value=4.2e-15 Score=154.62 Aligned_cols=210 Identities=21% Similarity=0.235 Sum_probs=145.3
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC---CCCCceeeEEEEC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV---IDDCIIDGDIRVN 92 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~---~~~~~~~G~I~~~ 92 (622)
--++++|.+.+- -+...+.+.||.+ ..|....++||| |-||||||+.|+.+. +|+ =.+++.
T Consensus 263 ~DIKiEnF~ISA--~Gk~LFvnA~L~I-----v~GRRYGLVGPN-----G~GKTTLLkHIa~RalaIPpn----IDvLlC 326 (807)
T KOG0066|consen 263 MDIKIENFDISA--QGKLLFVNASLTI-----VYGRRYGLVGPN-----GMGKTTLLKHIAARALAIPPN----IDVLLC 326 (807)
T ss_pred ccceeeeeeeec--ccceeeeccceEE-----EecceecccCCC-----CCchHHHHHHHHhhhccCCCC----CceEee
Confidence 345677777663 4455777888887 355567777777 799999999999875 342 234444
Q ss_pred CEecCc-----------cccccEEEEecCC-----CCCCCCCHHHHHHHH-HHcCCCccccHHHHHHHHHHHHHHhCCCc
Q psy2519 93 GKPVEG-----------KFRSACGFMYQHD-----LFSPSLTVYEHLYFM-ALLKLDRRVKAYQRIALINSLLIELGLMN 155 (622)
Q Consensus 93 G~~~~~-----------~~r~~igyV~Q~~-----~l~~~lTV~E~l~f~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 155 (622)
.+.+-. .-.++...+-.++ .--...|+.|-+.-. ..++.. .......+++++|.-+|...
T Consensus 327 EQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELrai---GA~sAEarARRILAGLGFsk 403 (807)
T KOG0066|consen 327 EQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAI---GADSAEARARRILAGLGFSK 403 (807)
T ss_pred eeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh---ccccchhHHHHHHhhcCCCh
Confidence 443311 0011222222111 122456777776443 233321 12223456778999999976
Q ss_pred cc-CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH
Q psy2519 156 SQ-HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234 (622)
Q Consensus 156 ~~-~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~ 234 (622)
.. +++... +|||-|-||++||||..+|-+|.|||||+.||-.+..-+-+.|+.+. +|.++|+||- .
T Consensus 404 EMQ~rPt~k--------FSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHDQ-g 470 (807)
T KOG0066|consen 404 EMQERPTTK--------FSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQ-G 470 (807)
T ss_pred hHhcCCccc--------cCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEEEeccc-c
Confidence 54 454444 99999999999999999999999999999999999999999998875 4999999995 6
Q ss_pred HHHhhccceeeecCCceEE-ecCh
Q psy2519 235 ELIDMFDKIILLADSRTAF-IGSK 257 (622)
Q Consensus 235 ~i~~~~D~v~~L~~G~iv~-~G~~ 257 (622)
.+-..|..|+-|++-++-| .|.-
T Consensus 471 FLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 471 FLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred hHHHHHHHHhhhhhhhhhhhcchH
Confidence 8889999999998877754 3443
No 416
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.52 E-value=1.7e-12 Score=131.03 Aligned_cols=227 Identities=14% Similarity=0.230 Sum_probs=161.5
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCC--hhhH----HHHHHHHHHHHHHHHHHhHHHHHhh-hhhhhh
Q psy2519 354 RSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLT--QRGV----QSVQGALFIMVTENTFSPMYSVLSQ-FPDMLP 426 (622)
Q Consensus 354 R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~--~~~~----~~~~g~lf~~~~~~~~~~~~~~~~~-f~~er~ 426 (622)
|+++..+|||.....-+++-+++.+++|.++-...+.+ ..+. +-..|.+.+.....+... +... ..+|+.
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~---~~~~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS---GISVIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHhC
Confidence 67788899999888888888888888888875431111 1111 112333333332222221 1111 122333
Q ss_pred HHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy2519 427 LFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSV 506 (622)
Q Consensus 427 v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~ 506 (622)
+++|=+. .-.+...|+++|.+.+++..++..+++..+.+++.+++. ..++.+++..++..++..++|.+++...++.
T Consensus 78 ~~~~~~~-~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~ 154 (236)
T TIGR01247 78 FLKEILV-APASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSM 154 (236)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 3333332 233678999999999999999999999999988877553 3455555566666778899999999999999
Q ss_pred HHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccChHHHHhhcC
Q psy2519 507 STAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDGAQVINNMN 586 (622)
Q Consensus 507 ~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~g~~~L~~~~ 586 (622)
+.+..+.+.+..+++.+||.+.|.+.+|+|++|+.+++|.+|+.|++-....++..
T Consensus 155 ~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~~------------------------ 210 (236)
T TIGR01247 155 EGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVSP------------------------ 210 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCCc------------------------
Confidence 99999999999999999999999999999999999999999999997653332110
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHH
Q psy2519 587 FSPDNLYPNLIAMVVLYFAFHTLAFL 612 (622)
Q Consensus 587 ~~~~~~~~~~~il~~~~~~f~~l~~~ 612 (622)
..+.+.++++++++.+++..++..
T Consensus 211 --~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 211 --TFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHH
Confidence 123566789999999988877754
No 417
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.49 E-value=5.8e-14 Score=138.52 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=93.7
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEE-EEec
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACG-FMYQ 109 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~ig-yV~Q 109 (622)
+..+..+++++. ++++..++.|+| |+||||+++++++..- ..++| ||
T Consensus 15 ~~~v~~~~~~~~-----~~~~~~~l~G~n-----~~GKstll~~i~~~~~--------------------la~~G~~v-- 62 (204)
T cd03282 15 KNFIPNDIYLTR-----GSSRFHIITGPN-----MSGKSTYLKQIALLAI--------------------MAQIGCFV-- 62 (204)
T ss_pred CcEEEeeeEEee-----CCCcEEEEECCC-----CCCHHHHHHHHHHHHH--------------------HHHcCCCc--
Confidence 446778888887 344555666665 8999999999987642 11222 23
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhC
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~ 189 (622)
+...+.+++.|++... ++..+..++..++ +|+|++|+ +.+.+++.+
T Consensus 63 -pa~~~~l~~~d~I~~~------------------------~~~~d~~~~~~S~--------fs~e~~~~-~~il~~~~~ 108 (204)
T cd03282 63 -PAEYATLPIFNRLLSR------------------------LSNDDSMERNLST--------FASEMSET-AYILDYADG 108 (204)
T ss_pred -chhhcCccChhheeEe------------------------cCCccccchhhhH--------HHHHHHHH-HHHHHhcCC
Confidence 3445566777766332 2222222333334 99999975 566778999
Q ss_pred CCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCCEEEEEeccC
Q psy2519 190 PALLLCDEPTTGLDSFSASKL-IRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 190 P~lLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
|+++++|||++|+|+.....+ .+.++.+.+ .|.++|++||+.
T Consensus 109 ~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~ 151 (204)
T cd03282 109 DSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFR 151 (204)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChH
Confidence 999999999999999887665 456777876 699999999985
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.48 E-value=1.1e-13 Score=141.85 Aligned_cols=139 Identities=17% Similarity=0.209 Sum_probs=95.2
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-----cccccEEEEecCCCCCCCCCHHHHHHH
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYF 125 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f 125 (622)
..++++|++ |||||||+++|+|.++| .+|+|.++|+++.. ++.+.+++++|++ +.+.++|.||..-
T Consensus 112 ~~~~i~g~~-----g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k 182 (270)
T TIGR02858 112 LNTLIISPP-----QCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK 182 (270)
T ss_pred eEEEEEcCC-----CCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH
Confidence 355666665 89999999999999998 48999999999852 3555677888854 4455566554110
Q ss_pred HHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q psy2519 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205 (622)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~ 205 (622)
.+ | .....+..+|+++++|||++
T Consensus 183 ------------~~-----------------------------------~-----~~~~i~~~~P~villDE~~~----- 205 (270)
T TIGR02858 183 ------------AE-----------------------------------G-----MMMLIRSMSPDVIVVDEIGR----- 205 (270)
T ss_pred ------------HH-----------------------------------H-----HHHHHHhCCCCEEEEeCCCc-----
Confidence 00 0 11222336899999999974
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCcHH-H-----------HhhccceeeecCCceEEecChHHH
Q psy2519 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSE-L-----------IDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 206 ~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~-i-----------~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
...+..+++.+ + .|.|+|+++|++..+ + ..+|||+++|++|+ ..|+++++
T Consensus 206 -~e~~~~l~~~~-~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 206 -EEDVEALLEAL-H-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred -HHHHHHHHHHH-h-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 33455555555 3 599999999985321 2 25689999999887 66666544
No 419
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.44 E-value=3.7e-12 Score=126.04 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=124.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhhHHH
Q psy2519 437 YSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPF 516 (622)
Q Consensus 437 Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~a~~~~~~~ 516 (622)
-+.+.++++|.+..++..++.+++...+.|++.|++.. .++.+++.+++..++..++|.++++.+++...+. ....
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHH
Confidence 35678899999999999999999999999999999864 4667777778888899999999999998765443 3345
Q ss_pred HHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccChHHHHhhcCCCCCCchhhH
Q psy2519 517 DYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDGAQVINNMNFSPDNLYPNL 596 (622)
Q Consensus 517 ~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~ 596 (622)
..++++++|.+.|.+.+|.|++|+.+++|++|+.+++....+++. ..+.|.++
T Consensus 133 ~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~---------------------------~~~~~~~~ 185 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN---------------------------DGTLWQAV 185 (208)
T ss_pred HHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc---------------------------HHHHHHHH
Confidence 567777899889999999999999999999999999976655421 12357789
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy2519 597 IAMVVLYFAFHTLAFLFLLMKSR 619 (622)
Q Consensus 597 ~il~~~~~~f~~l~~~~L~~~~~ 619 (622)
++++++.+++.++++..+|+++|
T Consensus 186 ~~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 186 AVLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999888887776554
No 420
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.43 E-value=3.4e-13 Score=134.37 Aligned_cols=158 Identities=16% Similarity=0.056 Sum_probs=100.8
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCC
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 112 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~ 112 (622)
.+..+++++. .++..++.|+| |||||||||++++..-. |+ .|..+.. .+..++++.|
T Consensus 19 ~v~n~~~l~~------~~~~~~l~Gpn-----~sGKstllr~i~~~~~l-----~~---~g~~vp~-~~~~i~~~~~--- 75 (216)
T cd03284 19 FVPNDTELDP------ERQILLITGPN-----MAGKSTYLRQVALIALL-----AQ---IGSFVPA-SKAEIGVVDR--- 75 (216)
T ss_pred eEeeeEEecC------CceEEEEECCC-----CCChHHHHHHHHHHHHH-----hc---cCCeecc-ccceecceee---
Confidence 3566666665 22455666665 89999999999875432 11 1222221 1345777755
Q ss_pred CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCe
Q psy2519 113 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192 (622)
Q Consensus 113 l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~l 192 (622)
+++.+++.|++..+... . ..|.++++-+...+.+|++
T Consensus 76 i~~~~~~~~~ls~g~s~------------------------------------------f-~~e~~~l~~~l~~~~~~~l 112 (216)
T cd03284 76 IFTRIGASDDLAGGRST------------------------------------------F-MVEMVETANILNNATERSL 112 (216)
T ss_pred EeccCCchhhhccCcch------------------------------------------H-HHHHHHHHHHHHhCCCCeE
Confidence 56777777766443100 0 0112222333333568999
Q ss_pred EEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHH
Q psy2519 193 LLCDEP---TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 193 LlLDEP---TsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
++|||| |+++|.... ...+++.+.++.+.|+|++||+. ++.+++|++..+.+|++...+..+++
T Consensus 113 lllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 113 VLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred EEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 999999 888887552 33455555553388999999994 77889999888889999887776654
No 421
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.39 E-value=1.3e-10 Score=118.75 Aligned_cols=236 Identities=11% Similarity=0.047 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhH----HHHHHHHHHHHHHHHHHhHHHHH-hhhh
Q psy2519 349 YVLISRSFLNVVRD-PAIQLSKLFQKVATALMCGLCFAGSIDLTQRGV----QSVQGALFIMVTENTFSPMYSVL-SQFP 422 (622)
Q Consensus 349 ~~L~~R~~~~~~Rd-~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~----~~~~g~lf~~~~~~~~~~~~~~~-~~f~ 422 (622)
..+.+|+++..+|+ |......+++-++.-+++|..+-...+ +..+. +-..|.+-+.+++.++ .+.. ..+.
T Consensus 8 ~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~-~~~g~~y~~f~~pg~l~~~~~~~~~---~~~~~~~~~ 83 (253)
T TIGR01291 8 AAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVG-SVDGVSYAAFLAAGMVATSAMTAST---FETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 45669999999999 988888888888888888888754311 11111 1111222222222111 1111 1112
Q ss_pred h--hhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 423 D--MLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFS 500 (622)
Q Consensus 423 ~--er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~ 500 (622)
+ |+..++|=+..-. ++..++++|.+.+.-..++..++...+.++ .|..+. ...+..+.++++..++..++|.+++
T Consensus 84 ~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2233333333333 788999999999877777766665555443 444433 2344444455566777789999999
Q ss_pred HhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccChHH
Q psy2519 501 LAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDGAQ 580 (622)
Q Consensus 501 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~g~~ 580 (622)
...++.+.+..+.+.+..|++.+||.+.|.+.+|.|++|+.+++|+.|+.|++-...+++ .
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~-~------------------ 221 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGG-P------------------ 221 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCC-C------------------
Confidence 999999999999999999999999999999999999999999999999999975543321 0
Q ss_pred HHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2519 581 VINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKS 618 (622)
Q Consensus 581 ~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~ 618 (622)
..+.+.++++++++.+++..++...+|++.
T Consensus 222 --------~~~~~~~~~~l~~~~vv~~~la~~~fr~~~ 251 (253)
T TIGR01291 222 --------GTQVGLHLGALCLYAVVPFFISAALLRRRL 251 (253)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 012456788899999988888887777654
No 422
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.37 E-value=1.3e-10 Score=117.11 Aligned_cols=222 Identities=15% Similarity=0.190 Sum_probs=142.6
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHH-HHHHHHHHHHHHHHHhHHHHHhhhhhhh--hHHHHHhcCCC
Q psy2519 360 VRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQS-VQGALFIMVTENTFSPMYSVLSQFPDML--PLFHREYSSGL 436 (622)
Q Consensus 360 ~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~-~~g~lf~~~~~~~~~~~~~~~~~f~~er--~v~~rE~~~g~ 436 (622)
+|||.....-+.+-+++-++++.+|-+. . +.+..+. ..|.+-+..++.+.. ..-.....|| ..++|=+..-.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~er~~G~l~rl~~~P~ 76 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGS-V-THNRGATFIPVLMALAAISTAFT---GQAIAVARDRRYGALKRLGATPL 76 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCc-c-CCcchhHhhHHHHHHHHHHHHHH---HHHHHHHHHHHhCHHHHHhcCCC
Confidence 6899988777777777666666666432 1 1111211 223222222222211 1112223333 35555555543
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHhhh
Q psy2519 437 YSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFS---SVSTAMACL 513 (622)
Q Consensus 437 Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~---~~~~a~~~~ 513 (622)
++..|+++|.+...+..++..+++. +++++.|++.....+ ..++.+.+....+.+++.+++++.+ +.+.+..+.
T Consensus 77 -~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~ 153 (232)
T TIGR00025 77 -PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVA 153 (232)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 7899999999988888776655554 556677887653322 3333444455566677777777764 445557788
Q ss_pred HHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccChHHHHhhcCCCCCCch
Q psy2519 514 VPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDGAQVINNMNFSPDNLY 593 (622)
Q Consensus 514 ~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~g~~~L~~~~~~~~~~~ 593 (622)
+.+..+++++||.+.|.+.+|.|++|+.+++|++|+.+++-..-..+. +....|
T Consensus 154 ~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~--------------------------~~~~~~ 207 (232)
T TIGR00025 154 NLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV--------------------------DTFGAV 207 (232)
T ss_pred HHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC--------------------------ChhhHH
Confidence 888999999999999999999999999999999999998854322211 112356
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy2519 594 PNLIAMVVLYFAFHTLAFLFLL 615 (622)
Q Consensus 594 ~~~~il~~~~~~f~~l~~~~L~ 615 (622)
.++++++++.+++..++...++
T Consensus 208 ~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 208 RDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888888888777766554
No 423
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.36 E-value=3.7e-10 Score=115.32 Aligned_cols=237 Identities=16% Similarity=0.162 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCC------Ch---hhHHHHHHHHHHHHHHHHHHhHH
Q psy2519 345 FTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDL------TQ---RGVQSVQGALFIMVTENTFSPMY 415 (622)
Q Consensus 345 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~------~~---~~~~~~~g~lf~~~~~~~~~~~~ 415 (622)
++++..+++|+++...|||..+..-+++-+++-+++|.+|-...+. +. -...-..|.+-+.+.+.++..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-- 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-- 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 3688999999999999999999988999999999999988542111 00 011223333333332222221
Q ss_pred HHHh-hhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHH
Q psy2519 416 SVLS-QFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATS 494 (622)
Q Consensus 416 ~~~~-~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s 494 (622)
+.. ...+|+..+++=+... -+...+.+++++...-..++..++...+.+. .|.+.+...++.....+++..+...+
T Consensus 79 -~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 -SLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred -hhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 111 1223333444444444 3788899999999988777776655555443 36655544444444455556677889
Q ss_pred HHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCC---CccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCC
Q psy2519 495 CGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSL---PPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPD 571 (622)
Q Consensus 495 ~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~i---p~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~ 571 (622)
+|++++.++++.+.+..+.+.+..+++..+|.+.+.+.+ |.|++|+.+++|+.|..|++-.. +.|.
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g~---------- 224 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYGQ---------- 224 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhCC----------
Confidence 999999999999888888889999999999999888665 88999999999999999988542 2110
Q ss_pred CCCccChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q psy2519 572 LPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLM 616 (622)
Q Consensus 572 ~~c~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~ 616 (622)
.-|..+.++.++.+++..++....|+
T Consensus 225 -------------------~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 225 -------------------LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 01445677777777777777666544
No 424
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.36 E-value=8.4e-13 Score=128.47 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=58.6
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
+|+|++|...+.. .+.+|+++++|||++|+|+.....+. .+++.+.++.+.++|++||++ ++.+.+|+---+.+++
T Consensus 62 fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~~~ 138 (185)
T smart00534 62 FMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRNLH 138 (185)
T ss_pred HHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceEEE
Confidence 8888887433332 23599999999999999999888864 566777653489999999995 6778887644444555
Q ss_pred eEEe
Q psy2519 251 TAFI 254 (622)
Q Consensus 251 iv~~ 254 (622)
....
T Consensus 139 ~~~~ 142 (185)
T smart00534 139 MSAD 142 (185)
T ss_pred EEEE
Confidence 5443
No 425
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.32 E-value=3.2e-12 Score=144.93 Aligned_cols=77 Identities=25% Similarity=0.419 Sum_probs=69.9
Q ss_pred cccChHHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 170 VVLSGGERKRLSFATELLTD----PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~----P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ ++|||++||+| .+...||++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~--~~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLP--QVAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChH--HHHHhcCeEEE
Confidence 46899999999999999985 699999999999999999999999999974 79999999997 44568999999
Q ss_pred ecCCc
Q psy2519 246 LADSR 250 (622)
Q Consensus 246 L~~G~ 250 (622)
+++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98764
No 426
>PRK10869 recombination and repair protein; Provisional
Probab=99.29 E-value=6.4e-12 Score=141.48 Aligned_cols=77 Identities=25% Similarity=0.477 Sum_probs=69.8
Q ss_pred cccChHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 170 VVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
+.+||||+||++||++++. +|+++++|||++|||+.++..+.+.|+++++ +.+||++||+| .+...+|+.+.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~--~~~~~ad~~~~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLP--QVAGCGHQHFF 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCH--HHHHhCCEEEE
Confidence 4589999999999999997 5899999999999999999999999999974 68999999997 45689999999
Q ss_pred ecCCc
Q psy2519 246 LADSR 250 (622)
Q Consensus 246 L~~G~ 250 (622)
+.++.
T Consensus 505 v~k~~ 509 (553)
T PRK10869 505 VSKET 509 (553)
T ss_pred Eeccc
Confidence 98753
No 427
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=9e-12 Score=150.93 Aligned_cols=77 Identities=23% Similarity=0.217 Sum_probs=71.6
Q ss_pred ccChHHHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 171 VLSGGERKRLSFATELLT----------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~----------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++++ .|++|++|||++ .....++
T Consensus 950 ~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~-~~~~~~~ 1027 (1042)
T TIGR00618 950 TLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVP-EFRERIP 1027 (1042)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-HHHHhhC
Confidence 399999999999999986 7999999999999999999999999999987 799999999996 6788999
Q ss_pred cceeeecCC
Q psy2519 241 DKIILLADS 249 (622)
Q Consensus 241 D~v~~L~~G 249 (622)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999753
No 428
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.27 E-value=5.5e-11 Score=133.20 Aligned_cols=136 Identities=26% Similarity=0.418 Sum_probs=106.2
Q ss_pred CCCCCHHHHHHHHHHcCCCccccHHHHHHHHH------HHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHH
Q psy2519 114 SPSLTVYEHLYFMALLKLDRRVKAYQRIALIN------SLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATEL 186 (622)
Q Consensus 114 ~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~------~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL 186 (622)
+..|++.|.+.|...+.+... ...-....+. ..|..+||.-. .++..++ |||||.||+-+|..|
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~T--------LSGGEaQRIRLAtqi 496 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGT--------LSGGEAQRIRLATQI 496 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCC--------cChhHHHHHHHHHHh
Confidence 356788888888877654221 1111111111 34556688643 4666666 999999999999999
Q ss_pred hhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChH
Q psy2519 187 LTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKD 258 (622)
Q Consensus 187 ~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~ 258 (622)
=.+= =+++||||+-||.+..-..+++.|++|.+ .|-|+|+|.||+ +....+|+|+=+ +.|+|++.|+++
T Consensus 497 GS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~ 573 (935)
T COG0178 497 GSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPE 573 (935)
T ss_pred cccceeeEEEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHH
Confidence 8763 36799999999999999999999999998 799999999995 677899999998 568999999999
Q ss_pred HHH
Q psy2519 259 AAL 261 (622)
Q Consensus 259 ~~~ 261 (622)
+++
T Consensus 574 ~i~ 576 (935)
T COG0178 574 ELL 576 (935)
T ss_pred HHH
Confidence 987
No 429
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.26 E-value=8.6e-12 Score=141.79 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=68.2
Q ss_pred cccChHHHHHHHHHHHHh----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh
Q psy2519 170 VVLSGGERKRLSFATELL----------TDPALLLCDEPT-TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~----------~~P~lLlLDEPT-sgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~ 238 (622)
..||||||||++||++|+ .+|+++|||||| ++||+..+..+.+.|+++ + |.|||++||++ ....
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~~iiiish~~--~~~~ 541 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DTNVFVISHKD--HDPQ 541 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CCeEEEEECch--hchh
Confidence 449999999999999987 599999999998 789999999999999998 3 78999999996 4557
Q ss_pred hccceeeecC-Cce
Q psy2519 239 MFDKIILLAD-SRT 251 (622)
Q Consensus 239 ~~D~v~~L~~-G~i 251 (622)
.+|++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 8999999985 654
No 430
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.21 E-value=1.8e-11 Score=142.37 Aligned_cols=59 Identities=29% Similarity=0.365 Sum_probs=54.2
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCCEEEEEeccC
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+|+||++++.|++.+ .+|+++|+|||++|+||.....+ ..+++.+++ .|.++|++||+.
T Consensus 386 fS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~ 445 (771)
T TIGR01069 386 FSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChH
Confidence 999999999998877 89999999999999999999999 578888876 799999999985
No 431
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.20 E-value=2.2e-11 Score=121.10 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPT-----TGLDSFSASKLIRMMRELTS 219 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPT-----sgLD~~~~~~i~~~l~~l~~ 219 (622)
-|++++.||++++.+|+++++|||| +|||+..+.++.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999975
No 432
>KOG0063|consensus
Probab=99.20 E-value=2.4e-11 Score=127.02 Aligned_cols=97 Identities=25% Similarity=0.254 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q psy2519 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220 (622)
Q Consensus 141 ~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~ 220 (622)
++..+++++.+.|.+..++-+.. |||||-||.+||++-+.+.++.++|||.+-||...+..-...|+.+..
T Consensus 191 r~~~~~~~~~~~L~~~~~re~~~--------lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~- 261 (592)
T KOG0063|consen 191 RDNKEEVCDQLDLNNLLDREVEQ--------LSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN- 261 (592)
T ss_pred cccHHHHHHHHHHhhHHHhhhhh--------cccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC-
Confidence 44567889999999988888777 999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 221 RKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 221 ~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
...=||+|.||. +..--+.|-+..|.
T Consensus 262 p~~YiIVVEHDL-sVLDylSDFiCcLY 287 (592)
T KOG0063|consen 262 PDRYIIVVEHDL-SVLDYLSDFICCLY 287 (592)
T ss_pred CCCeEEEEEeec-hHHHhhhcceeEEe
Confidence 688999999997 46666688888885
No 433
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.19 E-value=1.8e-10 Score=114.58 Aligned_cols=58 Identities=26% Similarity=0.256 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhc--CCCEEEEEeccC
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMRELTSQ--RKKTVLCTIHQP 232 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i-~~~l~~l~~~--~g~tvi~~tH~~ 232 (622)
-|-||++++++++.+|+++++|||++|+|+.....+ .+.++++.++ .+.++|++||++
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 456899999999999999999999999999875555 5788888763 135899999996
No 434
>PRK15066 inner membrane transport permease; Provisional
Probab=99.19 E-value=1.3e-08 Score=104.12 Aligned_cols=243 Identities=17% Similarity=0.199 Sum_probs=152.1
Q ss_pred hHHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHHHHHHHHhhcCCCC-C-h-hhHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy2519 344 WFTIIYVLISRSFLNVVRDPAI-QLSKLFQKVATALMCGLCFAGSIDL-T-Q-RGVQSVQGALFIMVTENTFSPMYSVLS 419 (622)
Q Consensus 344 ~~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~~~~~l~~G~~f~~~~~~-~-~-~~~~~~~g~lf~~~~~~~~~~~~~~~~ 419 (622)
.++-++.+.+|+++...||+.. +..-+++.++..+++|.++-...+. . . --..-..|.+-+.....+... +..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~---~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSN---VAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 4677889999999999999854 3444445555666666655221011 0 0 011122233333322222221 112
Q ss_pred hhhhhh--hHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 420 QFPDML--PLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGI 497 (622)
Q Consensus 420 ~f~~er--~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~ 497 (622)
.+.+++ ...+|=+.. --++..+.+++++...-..++..++..++.+...|.+.. ....++..+++...+....|.
T Consensus 83 ~i~~~~~~~~~~~l~vt-p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl 159 (257)
T PRK15066 83 SFFSAKFQRNIEELLVS-PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGL 159 (257)
T ss_pred HHHHHHHhhhHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 222332 111111122 347788999999988776666665555555544466543 222233333333333334588
Q ss_pred HHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccC
Q psy2519 498 MFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLED 577 (622)
Q Consensus 498 ~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~ 577 (622)
+++.+.++.+....+.+.+..+++..||.+.|.+++|.|++|+.+++|+.|..|++-..-+ |.
T Consensus 160 ~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~-g~---------------- 222 (257)
T PRK15066 160 INAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL-GI---------------- 222 (257)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc-CC----------------
Confidence 8888888888888888999999999999999999999999999999999999999864322 11
Q ss_pred hHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2519 578 GAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619 (622)
Q Consensus 578 g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~ 619 (622)
...+.|.++++++++.+++..++...++++++
T Consensus 223 ----------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 223 ----------SDVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred ----------CCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11234678899999999998888888776544
No 435
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.16 E-value=1.8e-11 Score=122.14 Aligned_cols=72 Identities=31% Similarity=0.517 Sum_probs=57.2
Q ss_pred cChHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 172 LSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+|||||.+++||.-|+ ...++++||||.++||...+..+.++|+++.+ +.-+|++||++ ..++.+|+.+-+.
T Consensus 137 lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 137 LSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp S-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc--ccccccccccccc
Confidence 9999999999997664 46789999999999999999999999999874 47899999985 7888999887763
No 436
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.12 E-value=4.7e-11 Score=144.17 Aligned_cols=75 Identities=25% Similarity=0.168 Sum_probs=67.1
Q ss_pred cChHHHHHHHHHHHHhh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 172 LSGGERKRLSFATELLT--------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~--------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
|||||+++++||++|+. +|++||+||||++||+.+...+++.|.++++ .|+||++|||.. ....++..+|
T Consensus 950 LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~-~l~~~i~~qi 1027 (1047)
T PRK10246 950 LSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVE-AMKERIPVQI 1027 (1047)
T ss_pred CCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHH-HHHHhccceE
Confidence 99999999999999996 8999999999999999999999999999987 699999999984 4555666777
Q ss_pred eeecC
Q psy2519 244 ILLAD 248 (622)
Q Consensus 244 ~~L~~ 248 (622)
.|-..
T Consensus 1028 ~V~k~ 1032 (1047)
T PRK10246 1028 KVKKI 1032 (1047)
T ss_pred EEEEC
Confidence 77654
No 437
>PRK03918 chromosome segregation protein; Provisional
Probab=99.11 E-value=1.4e-10 Score=138.83 Aligned_cols=75 Identities=36% Similarity=0.473 Sum_probs=66.6
Q ss_pred cccChHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 170 VVLSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 170 ~gLSgGqrq------RvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
..|||||++ |+++|++++.+|+++++||||+|||+..+..+.+.|..+++ .+.|||++||++ ++...||++
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~--~~~~~~d~~ 863 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDE--ELKDAADYV 863 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCH--HHHHhCCeE
Confidence 349999999 55556678899999999999999999999999999999876 578999999996 467899999
Q ss_pred eeec
Q psy2519 244 ILLA 247 (622)
Q Consensus 244 ~~L~ 247 (622)
++|.
T Consensus 864 ~~l~ 867 (880)
T PRK03918 864 IRVS 867 (880)
T ss_pred EEEE
Confidence 9997
No 438
>PRK01156 chromosome segregation protein; Provisional
Probab=99.07 E-value=7.8e-10 Score=132.54 Aligned_cols=77 Identities=30% Similarity=0.369 Sum_probs=66.0
Q ss_pred ccccChHHHHHHHH------HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-C-CEEEEEeccCcHHHHhhc
Q psy2519 169 KVVLSGGERKRLSF------ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR-K-KTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 169 ~~gLSgGqrqRvsI------A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~-g-~tvi~~tH~~~~~i~~~~ 240 (622)
+..||||||+|++| |++++.+|++++|||||++||+..+..+.++++...++. | .|+|++||++ +....|
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~~ 876 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSVA 876 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHhc
Confidence 34599999999975 589999999999999999999999999999998754433 3 4899999996 455799
Q ss_pred cceeeec
Q psy2519 241 DKIILLA 247 (622)
Q Consensus 241 D~v~~L~ 247 (622)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 439
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=3.6e-10 Score=139.77 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=61.4
Q ss_pred cChHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCCEEEEEeccCcHHHHhhc
Q psy2519 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS----QRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 172 LSgGqrq------RvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~----~~g~tvi~~tH~~~~~i~~~~ 240 (622)
||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. ..|.|||++||++ ..+..+|
T Consensus 1200 lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~~~ 1277 (1311)
T TIGR00606 1200 CSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVELLG 1277 (1311)
T ss_pred CchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHHHh
Confidence 9999999 99999999999999999999999999999999999988742 2478999999996 6777665
No 440
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.04 E-value=3.6e-10 Score=131.89 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=63.7
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
+|+||+|++.|++++ .+|+++|+|||++|+||.....+. .++..+.+ .|.++|++||++ +.....+|+..+. ++.
T Consensus 391 fS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~-el~~~~~~~~~v~-~~~ 466 (782)
T PRK00409 391 FSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYK-ELKALMYNREGVE-NAS 466 (782)
T ss_pred HHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChH-HHHHHHhcCCCeE-EEE
Confidence 999999999999998 899999999999999999999886 46777776 689999999995 3444445555444 455
Q ss_pred eEEe
Q psy2519 251 TAFI 254 (622)
Q Consensus 251 iv~~ 254 (622)
+.++
T Consensus 467 ~~~d 470 (782)
T PRK00409 467 VEFD 470 (782)
T ss_pred EEEe
Confidence 6553
No 441
>PRK13695 putative NTPase; Provisional
Probab=98.98 E-value=3.5e-10 Score=108.81 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=63.2
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEP--TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEP--TsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
+||+++-+..+++..+.+|+++++||| +.++| ....+.+.++.+ .|.++|+++|+. .+...+|++..+.+|
T Consensus 79 lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~-~~~~~i~v~h~~--~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 79 LEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLD-SEKPVIATLHRR--SVHPFVQEIKSRPGG 151 (174)
T ss_pred hHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHh-CCCeEEEEECch--hhHHHHHHHhccCCc
Confidence 999999999999999999999999995 33444 445677777765 689999999983 566789999999999
Q ss_pred ceEEe
Q psy2519 250 RTAFI 254 (622)
Q Consensus 250 ~iv~~ 254 (622)
++...
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 98765
No 442
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.97 E-value=3.7e-09 Score=115.35 Aligned_cols=172 Identities=17% Similarity=0.136 Sum_probs=110.5
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec---Cc---------c
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV---EG---------K 99 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~---~~---------~ 99 (622)
..+++++ +.+ .+|+.+.++|++ |+|||||+++|+|..++ ..|.|.+.|++- .. .
T Consensus 146 ~~vid~l-~~i-----~~Gq~i~I~G~s-----G~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~ 211 (438)
T PRK07721 146 VRAIDSL-LTV-----GKGQRVGIFAGS-----GVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEG 211 (438)
T ss_pred hhhhhee-eee-----cCCcEEEEECCC-----CCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhh
Confidence 4567777 777 577788887776 89999999999999988 479999965443 21 2
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc--ccCCccCCcCCCCccccChHHH
Q psy2519 100 FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN--SQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 100 ~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~~~~~~~~gLSgGqr 177 (622)
+++.+++|.+.+.-. -.+....+.+ . .+.|.+..-|-.- ..|.. +
T Consensus 212 l~r~v~vv~~~~~~~---~~r~~~~~~a-------------~-~iAEyfr~~g~~Vll~~Dsl------------t---- 258 (438)
T PRK07721 212 LKRSIVVVATSDQPA---LMRIKGAYTA-------------T-AIAEYFRDQGLNVMLMMDSV------------T---- 258 (438)
T ss_pred hcCeEEEEECCCCCH---HHHHHHHHHH-------------H-HHHHHHHHCCCcEEEEEeCh------------H----
Confidence 567889998754311 0111111111 0 0112222222110 01111 1
Q ss_pred HHHHHH-HHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHh-cCCC-----EEEEEeccCcHHHHhhccceeeecC
Q psy2519 178 KRLSFA-TELLTDPALLLCDEP--TTGLDSFSASKLIRMMRELTS-QRKK-----TVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 178 qRvsIA-~aL~~~P~lLlLDEP--TsgLD~~~~~~i~~~l~~l~~-~~g~-----tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|.+-| |++. +.+.|| |+|+||....++.++++++.+ +.|. ||++.+||+. + .+||++..+.+
T Consensus 259 -r~A~A~rEis-----l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~-e--~i~d~v~~i~d 329 (438)
T PRK07721 259 -RVAMAQREIG-----LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN-E--PIADTVRGILD 329 (438)
T ss_pred -HHHHHHHHHH-----HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC-c--hhhhhEEEecC
Confidence 11111 1111 123454 789999999999999999974 3575 9999999974 3 78999999999
Q ss_pred CceEEecChHH
Q psy2519 249 SRTAFIGSKDA 259 (622)
Q Consensus 249 G~iv~~G~~~~ 259 (622)
|+++.+++..+
T Consensus 330 G~Ivls~~la~ 340 (438)
T PRK07721 330 GHFVLDRQLAN 340 (438)
T ss_pred EEEEEeccHHH
Confidence 99999998764
No 443
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.96 E-value=5e-09 Score=101.44 Aligned_cols=75 Identities=17% Similarity=0.071 Sum_probs=63.2
Q ss_pred cChHHHH------HHHHHHHHhhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCCEEEEEeccCcH--------
Q psy2519 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCTIHQPSS-------- 234 (622)
Q Consensus 172 LSgGqrq------RvsIA~aL~~~P~lLlLDEPTsgLD---~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~-------- 234 (622)
+|+|++| +...+.....+|+++++|||++.+| ...+..+.+.++.+++ .|.|+|+++|+...
T Consensus 72 ~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~~~ 150 (187)
T cd01124 72 IGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTGFGGG 150 (187)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcccCcC
Confidence 9999998 5555555668999999999999999 8888889999999987 69999999997532
Q ss_pred HHHhhccceeeec
Q psy2519 235 ELIDMFDKIILLA 247 (622)
Q Consensus 235 ~i~~~~D~v~~L~ 247 (622)
.+..++|.++.|+
T Consensus 151 ~~~~~aD~ii~l~ 163 (187)
T cd01124 151 DVEYLVDGVIRLR 163 (187)
T ss_pred ceeEeeeEEEEEE
Confidence 2678899999886
No 444
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.92 E-value=1.1e-08 Score=102.36 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=42.2
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 184 TELLTDPALLLCDEPTTGLDSFSASKL-IRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 184 ~aL~~~P~lLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
..-+.+|+++|+|||.+|.|+.....+ ..+++.+.+..+.++|++||++ ++.++.
T Consensus 105 l~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 105 LSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred HHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 334457899999999999998777775 5678888764488999999996 454554
No 445
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.90 E-value=1.9e-09 Score=132.55 Aligned_cols=74 Identities=18% Similarity=0.349 Sum_probs=65.1
Q ss_pred cccChHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 170 VVLSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
..||||||+|++||++++ ..|+++||||||++||+.++..+.++|+++++ +.++|++||++ .....||+++.
T Consensus 1088 ~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~--~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1088 SLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNK--GTMEVADQLYG 1163 (1179)
T ss_pred cccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcCh--hHHHHhhhHee
Confidence 349999999999999985 56799999999999999999999999999975 47899999997 34578999986
Q ss_pred ec
Q psy2519 246 LA 247 (622)
Q Consensus 246 L~ 247 (622)
+.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 64
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.89 E-value=6.5e-09 Score=105.58 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=62.1
Q ss_pred cChHH--------HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 172 LSGGE--------RKRLSFATELLTDPALLLCDEPTTGLDSFSASK-LIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 172 LSgGq--------rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~-i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+|||+ +||+++||++..+++|.+| ||+.+|+.+... ++ +.++.. .+.|.|+.+|.. .....+|.
T Consensus 130 ~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~l--a~~~~~pa 202 (249)
T cd01128 130 LSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRL--AERRIFPA 202 (249)
T ss_pred CCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhc-CCCcEEEEchHH--hhCCCCCe
Confidence 89999 9999999999899999999 999999755544 54 566654 578999999996 34578999
Q ss_pred eeeecCCce
Q psy2519 243 IILLADSRT 251 (622)
Q Consensus 243 v~~L~~G~i 251 (622)
|.+|+.|++
T Consensus 203 I~vl~s~sr 211 (249)
T cd01128 203 IDILKSGTR 211 (249)
T ss_pred EEEcCCCCc
Confidence 999999987
No 447
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.89 E-value=2.4e-07 Score=94.73 Aligned_cols=169 Identities=22% Similarity=0.337 Sum_probs=122.3
Q ss_pred hhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q psy2519 424 MLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFS-LA 502 (622)
Q Consensus 424 er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~-~~ 502 (622)
++..++|=..+...+ ..+++++.+.......+...+...+..+..|. .....+..+..++.+......++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555533 55666666666665555555555555556662 2333344555566666777777888666 35
Q ss_pred cCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccChHHHH
Q psy2519 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDGAQVI 582 (622)
Q Consensus 503 ~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~g~~~L 582 (622)
.++.+.+..+..++..++..++|.+.|.+.+|.|++|+.++.|..|+.+++-.....+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------------------- 253 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------------------- 253 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc--------------------
Confidence 577888888888999999999999999999999999999999999999999765443221
Q ss_pred hhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy2519 583 NNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRP 620 (622)
Q Consensus 583 ~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~~ 620 (622)
..+.+.++++++++.+++.+++...++++.+.
T Consensus 254 ------~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 254 ------NDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 12267889999999999999999998887654
No 448
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.86 E-value=3.4e-09 Score=93.01 Aligned_cols=73 Identities=11% Similarity=0.014 Sum_probs=56.8
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----cccccEEEE
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFM 107 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----~~r~~igyV 107 (622)
.++++++++.+ ++++.++++|++ |||||||++++. +|++.++|.++.. ..++.++++
T Consensus 2 ~~aL~~vsl~i-----~~ge~v~I~GpS-----GsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~ 62 (107)
T cd00820 2 TTSLHGVLVDV-----YGKVGVLITGDS-----GIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRN 62 (107)
T ss_pred ceEEEeeEEEE-----cCCEEEEEEcCC-----CCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEe
Confidence 46899999999 555666766664 899999999986 5889999999854 356667788
Q ss_pred ecCCCCCCCCCHHHHHHHH
Q psy2519 108 YQHDLFSPSLTVYEHLYFM 126 (622)
Q Consensus 108 ~Q~~~l~~~lTV~E~l~f~ 126 (622)
+|+ + ...|++|||.++
T Consensus 63 ~q~--l-f~~ti~~Ni~~~ 78 (107)
T cd00820 63 PEL--G-LEIRLRLNIFLI 78 (107)
T ss_pred chh--c-chhhHHhhceee
Confidence 776 3 344999999884
No 449
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.85 E-value=1e-08 Score=103.32 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=53.0
Q ss_pred cChHHHHHHHHHHHHh----hCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH------HHH
Q psy2519 172 LSGGERKRLSFATELL----TDPALLLCDEPTTGL----DSFSASKLIRMMRELTSQRKKTVLCTIHQPSS------ELI 237 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~----~~P~lLlLDEPTsgL----D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~------~i~ 237 (622)
+|+++.++-.+.+.+- .+|+++++||||+++ |+....++.+.++++++ .|.|+++++|.... .+.
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~t~~~~~~~~~~~~~~~ 174 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIILTANPKELDESVLTILR 174 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEEEecccccccccceeEE
Confidence 6777665555444333 369999999999999 88888999999999987 58877776553210 123
Q ss_pred hhccceeeec
Q psy2519 238 DMFDKIILLA 247 (622)
Q Consensus 238 ~~~D~v~~L~ 247 (622)
.++|-|+.|+
T Consensus 175 ~~~DgvI~L~ 184 (230)
T PRK08533 175 TAATMLIRLE 184 (230)
T ss_pred EeeeEEEEEE
Confidence 4567777775
No 450
>PRK00064 recF recombination protein F; Reviewed
Probab=98.80 E-value=1e-08 Score=110.07 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=65.1
Q ss_pred cccChHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 170 VVLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
.-+|+||||++++|+.|+ .+|++++||||+++||+..+..+.+.+.++ +..+++++|++ +.+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~-~~~~~~~ 346 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDL-EDLADLL 346 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCCh-hhhhhhh
Confidence 359999999999999886 799999999999999999999999988764 34788999985 4555553
Q ss_pred --cceeeecCCce
Q psy2519 241 --DKIILLADSRT 251 (622)
Q Consensus 241 --D~v~~L~~G~i 251 (622)
+++..+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 47889999986
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.79 E-value=4.6e-08 Score=115.50 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=60.7
Q ss_pred hhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH---------hhccceeeecCCceEEecC
Q psy2519 187 LTDPALLLCDEPTTGL-DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI---------DMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 187 ~~~P~lLlLDEPTsgL-D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~---------~~~D~v~~L~~G~iv~~G~ 256 (622)
..+|+++++|||+.+| |+..+..+.+.++++++ .|.+++++||++. ++. +.||+.++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 79999999999999987 6899999999974 543 6799999999999877664
Q ss_pred h
Q psy2519 257 K 257 (622)
Q Consensus 257 ~ 257 (622)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 4
No 452
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.77 E-value=1.1e-08 Score=125.90 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=67.6
Q ss_pred ccccChHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 169 KVVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
+..||||||++++||++++. .|++++||||+++||+..+..+.++|+++++ +.++|++||++ .....||+++
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcH--HHHHhcceeE
Confidence 45699999999999999985 6799999999999999999999999999864 47899999996 4668999998
Q ss_pred eecC
Q psy2519 245 LLAD 248 (622)
Q Consensus 245 ~L~~ 248 (622)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
No 453
>PRK02224 chromosome segregation protein; Provisional
Probab=98.77 E-value=1.3e-08 Score=121.81 Aligned_cols=76 Identities=30% Similarity=0.430 Sum_probs=65.7
Q ss_pred cccChHHHH------HHHHHHHHhhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCC-EEEEEeccCcHHH
Q psy2519 170 VVLSGGERK------RLSFATELLTD-----P-ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK-TVLCTIHQPSSEL 236 (622)
Q Consensus 170 ~gLSgGqrq------RvsIA~aL~~~-----P-~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~-tvi~~tH~~~~~i 236 (622)
..||||||+ |+++|++++.+ | +++++||||++||+..+..+.++|+++.+ .|. +||++||++ ..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~--~~ 856 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDD--EL 856 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECCh--HH
Confidence 459999999 99999999864 3 67999999999999999999999999986 564 899999996 44
Q ss_pred HhhccceeeecC
Q psy2519 237 IDMFDKIILLAD 248 (622)
Q Consensus 237 ~~~~D~v~~L~~ 248 (622)
...+|+++.+..
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 568999999964
No 454
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.73 E-value=2.1e-08 Score=100.00 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCEEEEEeccC
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~-l~~l~~~~g~tvi~~tH~~ 232 (622)
+|++-....+.+|+++|+|||.+|+|+.....+... ++.+.+..+.++|++||++
T Consensus 98 ~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 98 SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 333333344567999999999999999999998888 7888763389999999996
No 455
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.69 E-value=1.3e-07 Score=99.39 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=55.8
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHH
Q psy2519 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
.++.+|-.+|+++++|||.+ .+..+.++.+.. .+.+++.|+|..+ +.+..||+..|..|++...|.+.+.
T Consensus 210 ~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~-g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~ 279 (308)
T TIGR02788 210 LLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNT-GHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAY 279 (308)
T ss_pred HHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhc-CCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHH
Confidence 34556778999999999996 456677777763 3456799999963 5667999999999999988888776
Q ss_pred H
Q psy2519 261 L 261 (622)
Q Consensus 261 ~ 261 (622)
.
T Consensus 280 ~ 280 (308)
T TIGR02788 280 I 280 (308)
T ss_pred H
Confidence 5
No 456
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.67 E-value=4e-08 Score=92.02 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=47.6
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTT----------GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTs----------gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
.+.++.++...+++...+|+++++|||++ +.|...+..+.++.....+ .+.|+|+++|.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~vv~~~~~~~ 138 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK-GGVTVIFTLQVPS 138 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc-CCceEEEEEecCC
Confidence 45666777888899999999999999994 5555656666666666544 7999999999864
No 457
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.67 E-value=4.2e-07 Score=86.36 Aligned_cols=59 Identities=22% Similarity=0.441 Sum_probs=50.7
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
.|.||-=---+.+.+ .+--+.+||||-++|.|.-+.+++..|+++++ .|.-+|+.||.|
T Consensus 130 ~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSP 188 (233)
T COG3910 130 MSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSP 188 (233)
T ss_pred hccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecCh
Confidence 789987554444443 56689999999999999999999999999998 799999999987
No 458
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.65 E-value=4.6e-07 Score=85.34 Aligned_cols=131 Identities=15% Similarity=0.044 Sum_probs=96.4
Q ss_pred hhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 421 FPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSL--SVFLMAVLICILIINVATSCGIM 498 (622)
Q Consensus 421 f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~--~~f~~f~~~~~l~~~~~~s~g~~ 498 (622)
..+|+..++|-+..-. +++.|+++|.+...-..++..++..++.+. .|.+... ...+.++++..+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888887776 789999999999999998888877777754 4877653 22333333333334444455555
Q ss_pred HHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHH
Q psy2519 499 FSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALT 554 (622)
Q Consensus 499 i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~ 554 (622)
++...++.+ +......+..|+++.+|.+.|.+++|+|++|+.+++|+.|+.+++-
T Consensus 92 ~a~~~~~~~-~~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRF-AMEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHH-HHHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 555555544 3434577788888999999999999999999999999999999985
No 459
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.64 E-value=1.3e-07 Score=102.72 Aligned_cols=168 Identities=16% Similarity=0.042 Sum_probs=112.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
.+-++++..+..| ..+++.. +.+ ++|+...++|++ |+|||||+++|+|..++ ..|.|.+.|+..
T Consensus 131 ~~r~~i~~~l~TG-iraID~l-l~I-----~~Gqri~I~G~s-----G~GKTtLl~~Ia~~~~~---~~gvI~~iGerg- 194 (432)
T PRK06793 131 FEREEITDVFETG-IKSIDSM-LTI-----GIGQKIGIFAGS-----GVGKSTLLGMIAKNAKA---DINVISLVGERG- 194 (432)
T ss_pred hheechhhccCCC-CEEEecc-cee-----cCCcEEEEECCC-----CCChHHHHHHHhccCCC---CeEEEEeCCCCc-
Confidence 3445566655433 4566663 666 567788777765 89999999999999987 367776666531
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
.+|.|.+...... -++.+. ..+.. +.. -|.|+|
T Consensus 195 -------------------~ev~e~~~~~l~~---------------------~gl~~t--vvv~~--tsd---~s~~~r 227 (432)
T PRK06793 195 -------------------REVKDFIRKELGE---------------------EGMRKS--VVVVA--TSD---ESHLMQ 227 (432)
T ss_pred -------------------ccHHHHHHHHhhh---------------------ccccee--EEEEE--CCC---CCHHHH
Confidence 3566654432111 011110 00111 122 899999
Q ss_pred HHHHHHHHHh-------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 178 KRLSFATELL-------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 178 qRvsIA~aL~-------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
+|++.+.+.+ .++-++++|+||...|+. +++-..+.+.-. .|.+..+.+|.+ .+ ++|.....+|.
T Consensus 228 ~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~--~L---~ERag~~~~GS 299 (432)
T PRK06793 228 LRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMK--KL---LERSGKTQKGS 299 (432)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccch--hH---HHHhccCCCcc
Confidence 9999998887 789999999999999996 777777777765 488888888842 33 44555557888
Q ss_pred eEEecC
Q psy2519 251 TAFIGS 256 (622)
Q Consensus 251 iv~~G~ 256 (622)
+...++
T Consensus 300 iT~~~t 305 (432)
T PRK06793 300 ITGIYT 305 (432)
T ss_pred eEEEEE
Confidence 866554
No 460
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=9.6e-08 Score=102.61 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=54.4
Q ss_pred cccChHHHHHHHHHHHHhh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 170 VVLSGGERKRLSFATELLT---------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~---------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
.-+|.||||++.||..|+. +|+|||||||+++||+..+..+++.|++. |.++++++|++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~ 341 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISL 341 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecCh
Confidence 3589999999999999999 99999999999999999999999999753 67999999986
No 461
>PRK14079 recF recombination protein F; Provisional
Probab=98.54 E-value=1.1e-07 Score=101.58 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=64.0
Q ss_pred ccChHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 171 VLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
-+|+||||++++|..|+ .+|++++||||+++||+..+..+.+.|.+.. .++|.+|+.+ +.+|
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----QAIVAGTEAP-----PGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----cEEEEcCCCC-----CCCc
Confidence 48999999999999999 8999999999999999999999998886532 3566666543 5789
Q ss_pred ceeeecCCceEEecC
Q psy2519 242 KIILLADSRTAFIGS 256 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~ 256 (622)
+++.+.+|++.-..|
T Consensus 334 ~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 334 LTLRIEAGVFTPEAP 348 (349)
T ss_pred eEEEEeccEecCCCC
Confidence 999999988764433
No 462
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.48 E-value=1.5e-06 Score=87.75 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=57.3
Q ss_pred cChHHHHHHHHHHHHhh--CCCeEEEeCCCCC---CCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH------HHHhhc
Q psy2519 172 LSGGERKRLSFATELLT--DPALLLCDEPTTG---LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS------ELIDMF 240 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~--~P~lLlLDEPTsg---LD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~------~i~~~~ 240 (622)
.|.++++.+.....++. +|+++++||||+. .|.....++++.++++++ .|.|+++++|+... .+..++
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 67889999999999997 9999999999964 555555566666777776 68999999997532 145566
Q ss_pred cceeeec
Q psy2519 241 DKIILLA 247 (622)
Q Consensus 241 D~v~~L~ 247 (622)
|-++.|+
T Consensus 180 DgvI~L~ 186 (234)
T PRK06067 180 DVYLKLR 186 (234)
T ss_pred EEEEEEE
Confidence 7776665
No 463
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.48 E-value=7.2e-07 Score=87.78 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=42.8
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+++++|..+|+++++|||. |+.+...+ .+.+. .|..++.++|.++ +.+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~-~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAE-TGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHH-cCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 55543333 34454 6899999999963 446789988774
No 464
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.44 E-value=7.9e-07 Score=90.08 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=40.6
Q ss_pred HhhCCCeEEEeCCCC------CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 186 LLTDPALLLCDEPTT------GLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 186 L~~~P~lLlLDEPTs------gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
...+|+++++| |++ .+|+.....+++.|++++++.|.||++++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 765 47999999999999999987799999999985
No 465
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.44 E-value=5.2e-07 Score=108.29 Aligned_cols=77 Identities=34% Similarity=0.361 Sum_probs=67.5
Q ss_pred ccccChHHHHHHHHHHHHh------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 169 KVVLSGGERKRLSFATELL------TD--PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~------~~--P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
+..|||||+-.++||.+|+ .+ -+.|+|||||..||+.....+++.|..+.. .+.+|++|||++ +..+.+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~-~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS-DGRQIIIISHVE--ELKERA 889 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeChH--HHHHhC
Confidence 3459999999888877665 35 689999999999999999999999999997 599999999995 788899
Q ss_pred cceeeecC
Q psy2519 241 DKIILLAD 248 (622)
Q Consensus 241 D~v~~L~~ 248 (622)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99998864
No 466
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.38 E-value=0.00021 Score=72.51 Aligned_cols=220 Identities=18% Similarity=0.141 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhc---CCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Q psy2519 349 YVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAG---SIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDML 425 (622)
Q Consensus 349 ~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~---~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er 425 (622)
+.+.||.++.++|.|.....-.+..++.|+.. ..+.+ ....+.++.+.-.+... ..+....++. . .
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~p~l-------~-~ 70 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAP--WVFLFLIPAI-------T-M 70 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHH--HHHHHHHHHH-------H-H
Confidence 46889999999999988765444444445332 22211 10111122222111111 1111111111 1 2
Q ss_pred hHHHHHhcCCCc--------ChHHHHHHHHHHHHHHHHHHHH---HHHhhhhhccCC--cccHHHHHHHHHHHHHHHHHH
Q psy2519 426 PLFHREYSSGLY--------SAFQFYLSYILSSLPGLIIQAV---LFTVILYWISGL--RNSLSVFLMAVLICILIINVA 492 (622)
Q Consensus 426 ~v~~rE~~~g~Y--------~~~~y~la~~l~~lp~~~~~~~---~f~~i~Y~~~gl--~~~~~~f~~f~~~~~l~~~~~ 492 (622)
..+.|||++|.. +.+.++++|.++-.-..++..+ ++....++.... ..+...++..++..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 566677777764 5688999999988765443332 222222222111 124555555555666777788
Q ss_pred HHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCC--CccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCC
Q psy2519 493 TSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSL--PPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNP 570 (622)
Q Consensus 493 ~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~i--p~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~ 570 (622)
.++|.++|+++.+...|..++..+...+.+..+. ..++ |++.+|+.|+||..|-.+.. +|. .
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~---l~~~~~~~~~~~l~~~sp~~~~~~~~-----~g~-i------- 214 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFLFYFGFDG---LASLLWGGSAYTISELGLSYHYESIS-----RGV-I------- 214 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH---HhhhcchhHHHHHHHcCHHHHHHHHH-----cCc-c-------
Confidence 8999999999998888766554433222221122 2233 78889999999987754433 111 0
Q ss_pred CCCCccChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q psy2519 571 DLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLM 616 (622)
Q Consensus 571 ~~~c~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~ 616 (622)
.+.++...+.+.+++..++...+++
T Consensus 215 ---------------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 215 ---------------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred ---------------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1356777888888887777766654
No 467
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.29 E-value=1e-06 Score=109.22 Aligned_cols=60 Identities=30% Similarity=0.396 Sum_probs=52.7
Q ss_pred ccccChHHHHHHH----HHHH--------HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 169 KVVLSGGERKRLS----FATE--------LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 169 ~~gLSgGqrqRvs----IA~a--------L~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
..+||||||||++ +|++ +..+|++++|||||+|||+..+..+++++.++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 3569999999996 5645 55899999999999999999999999999887 67899999974
No 468
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=0.00038 Score=71.40 Aligned_cols=208 Identities=15% Similarity=0.163 Sum_probs=132.3
Q ss_pred hHHHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHHHHHhhcCC--CCChhhHHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy2519 344 WFTIIYVLISRSFLNVVRDPAIQ-LSKLFQKVATALMCGLCFAGSI--DLTQRGVQSVQGALFIMVTENTFSPMYSVLSQ 420 (622)
Q Consensus 344 ~~~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~~f~~~~--~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~ 420 (622)
.++..+.|.+|+++..+|+...- .--++.-+++.++++.+|-.+. +...--..-..|.+.+..... +...+...
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~~~~l~~G~~~w~f~~~---~i~~~~~s 92 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNFLAYLLAGLILWFFFSE---AISEGAGS 92 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH---HHHhHHHH
Confidence 56788899999999988886542 2334455666666666664331 111111122223222221111 12233445
Q ss_pred hhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 421 FPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFS 500 (622)
Q Consensus 421 f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~ 500 (622)
+.+...++++-+ ..+..+.+++++.++-..++..++....+-+.-+.+ +. .+..+...+.+..+.+.++|++++
T Consensus 93 ~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s~-~~l~~~~~l~~l~l~~~g~~l~~a 166 (263)
T COG1682 93 VVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-SW-HWLLLLPALLLLILFSVGLGLILA 166 (263)
T ss_pred hhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555655433 388899999999998876666666555555544443 33 344444555566677778888877
Q ss_pred HhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCC
Q psy2519 501 LAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQG 560 (622)
Q Consensus 501 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~ 560 (622)
.++..+.---.+...+.-+++..+|.+-+.+.+|+-++|+.++||+.|-.|.+-..-+++
T Consensus 167 ~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~ 226 (263)
T COG1682 167 SLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG 226 (263)
T ss_pred hHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 776443333345556777888899999999999999999999999999999987665543
No 469
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.26 E-value=2.4e-06 Score=85.22 Aligned_cols=60 Identities=38% Similarity=0.609 Sum_probs=53.3
Q ss_pred cChHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 172 LSGGERKRLSFATELLTDP---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P---~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+|.|+||.+.++..|...+ .++++|||-++|+|..+..+++.|+++++ .+.-+|++||.|
T Consensus 237 ~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp 299 (303)
T PF13304_consen 237 LSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSP 299 (303)
T ss_dssp --HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-G
T ss_pred CCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccc
Confidence 7999999999999988776 89999999999999999999999999876 688999999987
No 470
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.20 E-value=4.1e-05 Score=68.79 Aligned_cols=59 Identities=32% Similarity=0.345 Sum_probs=46.7
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-----HHHHHHhcCCCEEEEEec
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR-----MMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~-----~l~~l~~~~g~tvi~~tH 230 (622)
..+++..+..++++--.+|+++++||+..-.+......... .........+..+|+++|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 77888888888888888899999999999999998887765 223333335788999998
No 471
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.20 E-value=5.5e-08 Score=108.53 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=60.7
Q ss_pred HHHhCCCcccCCccCCcCCCCccccChHHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEE
Q psy2519 148 LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA--TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225 (622)
Q Consensus 148 l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA--~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tv 225 (622)
++.+++.+..++.... +|+||+|||.|+ .+|..+|+.. +..+.++.++++.+++ .|.|+
T Consensus 100 ~~~~~l~~~l~~i~~~--------ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~-~g~Tv 160 (484)
T TIGR02655 100 VGGFDLSALIERINYA--------IRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQ-IGVTT 160 (484)
T ss_pred cccCCHHHHHHHHHHH--------HHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHH-CCCEE
Confidence 3445555555555444 999999999999 6666666543 5678889999999987 79999
Q ss_pred EEEeccCcHH-------H-Hhhccceeeec
Q psy2519 226 LCTIHQPSSE-------L-IDMFDKIILLA 247 (622)
Q Consensus 226 i~~tH~~~~~-------i-~~~~D~v~~L~ 247 (622)
|+++|++... + ..++|.|+.|+
T Consensus 161 LLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 161 VMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred EEEecCcccccccccCCceeEeeeeEEEEE
Confidence 9999985320 2 56789999986
No 472
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.17 E-value=4.6e-06 Score=91.99 Aligned_cols=140 Identities=12% Similarity=0.060 Sum_probs=88.3
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~ 128 (622)
.++.+.++|+| |+||||++..|++..... .|. +++++|.+|. ...++.|+|.+.++
T Consensus 255 ~g~Vi~LvGpn-----GvGKTTTiaKLA~~~~~~---~G~-------------~kV~LI~~Dt---~RigA~EQLr~~Ae 310 (484)
T PRK06995 255 RGGVFALMGPT-----GVGKTTTTAKLAARCVMR---HGA-------------SKVALLTTDS---YRIGGHEQLRIYGK 310 (484)
T ss_pred CCcEEEEECCC-----CccHHHHHHHHHHHHHHh---cCC-------------CeEEEEeCCc---cchhHHHHHHHHHH
Confidence 45667777776 899999999999977541 232 2578888875 45789999999877
Q ss_pred cCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHH-HHHHHHHHhhCC-----CeEEEeCCCCCC
Q psy2519 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK-RLSFATELLTDP-----ALLLCDEPTTGL 202 (622)
Q Consensus 129 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrq-RvsIA~aL~~~P-----~lLlLDEPTsgL 202 (622)
.... +........+..++..++.+.....|.+ ...+++. .+.-..+++.++ .+|.||+++.+
T Consensus 311 ilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLIDT--------aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~- 378 (484)
T PRK06995 311 ILGV---PVHAVKDAADLRLALSELRNKHIVLIDT--------IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG- 378 (484)
T ss_pred HhCC---CeeccCCchhHHHHHHhccCCCeEEeCC--------CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-
Confidence 6532 1111122334455667777766666666 2222322 234444555554 68999999988
Q ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEec
Q psy2519 203 DSFSASKLIRMMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 203 D~~~~~~i~~~l~~l~~~~g~tvi~~tH 230 (622)
..+.+.++.... .+.+-++.|+
T Consensus 379 -----~~l~~i~~~f~~-~~~~g~IlTK 400 (484)
T PRK06995 379 -----DTLNEVVQAYRG-PGLAGCILTK 400 (484)
T ss_pred -----HHHHHHHHHhcc-CCCCEEEEeC
Confidence 345555566654 5666666666
No 473
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.10 E-value=7.3e-06 Score=70.07 Aligned_cols=46 Identities=33% Similarity=0.565 Sum_probs=35.4
Q ss_pred ccChHHHH-HHHHHHH------Hhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q psy2519 171 VLSGGERK-RLSFATE------LLT------DPALLLCDEPTTGLDSFSASKLIRMMRE 216 (622)
Q Consensus 171 gLSgGqrq-RvsIA~a------L~~------~P~lLlLDEPTsgLD~~~~~~i~~~l~~ 216 (622)
++|||||| .++++.+ +-. .|++++||||+++||+..+..+++++++
T Consensus 32 ~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 32 TLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 39999994 4444433 223 3799999999999999999999999875
No 474
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.07 E-value=5.2e-06 Score=83.39 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCc-------HHHHhhccceeeec
Q psy2519 206 SASKLIRMMRELTSQRKKTVLCTIHQPS-------SELIDMFDKIILLA 247 (622)
Q Consensus 206 ~~~~i~~~l~~l~~~~g~tvi~~tH~~~-------~~i~~~~D~v~~L~ 247 (622)
..+++...+.+.+++.|.|+|+++|... ..+..++|.|+.|+
T Consensus 140 ~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 140 MARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 3445555566555558999999999632 13556789999886
No 475
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=98.07 E-value=0.0014 Score=67.54 Aligned_cols=239 Identities=12% Similarity=0.105 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q psy2519 345 FTIIYVLISRSFLNVVRDPAIQ-LSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPD 423 (622)
Q Consensus 345 ~~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~ 423 (622)
.+-++.|.+|.++..+|+-..- .--++.-+++.+++..+|-...+..+.+ ..+..|..+....+....+++..-..
T Consensus 18 ~~li~~L~~rdlk~ry~~s~LG~~W~~l~Pll~~~v~~~vF~~~~~~~~~~---~~~~~fl~~Gl~pw~~fs~~~~~~~~ 94 (264)
T PRK15176 18 CELIILLMSRDIKTRYNGNLLNYMMVLAVPLVWISITVISFQYLNRSVPIS---TDDISFVIAGILPYLLFRYTITATMR 94 (264)
T ss_pred HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC---cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999888875542 3334555666666666654321111100 01124444433333333332222111
Q ss_pred hhhHHHHHh-cCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 424 MLPLFHREY-SSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYW-ISGLRNSLSVFLMAVLICILIINVATSCGIMFSL 501 (622)
Q Consensus 424 er~v~~rE~-~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~-~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~ 501 (622)
-..+..... -.+.| .....++....+.--.++.-++...+++. ..+..++.. ..+...+++..+.+.++|+++|+
T Consensus 95 a~si~~~~~li~kv~-~p~~i~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--l~~~~~~ll~~l~~~glglils~ 171 (264)
T PRK15176 95 THSFSTSLAVVSQVK-KRHVIFSLAAIEFVNAVIIYIIISLINFLIFSRWEAQKP--FLIFEGMVIAWLLGLSFGYFCDA 171 (264)
T ss_pred HHHHHHHhhcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111 11122 33333444433433222222221111111 113333322 22222233355556677776666
Q ss_pred hc---CCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccCh
Q psy2519 502 AF---SSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDG 578 (622)
Q Consensus 502 ~~---~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~g 578 (622)
+. +|.+. +.++++.+.+..+|.+-+.+.+|+.++|+.++||+.+..|+.-..-+++..
T Consensus 172 l~v~~rDi~~---i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~~~~---------------- 232 (264)
T PRK15176 172 LSERFPLVYK---AVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEGYH---------------- 232 (264)
T ss_pred HHHhCccHHH---HHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhcCcC----------------
Confidence 55 66554 445567777888898888899999999999999999999998766664321
Q ss_pred HHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy2519 579 AQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRP 620 (622)
Q Consensus 579 ~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~~ 620 (622)
..|.++...+++.++..+++++..|..+.+
T Consensus 233 ------------~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~ 262 (264)
T PRK15176 233 ------------SLYLEPFYPLAFSATLFLAGLIFHLICDTE 262 (264)
T ss_pred ------------ccccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011234566677777777777766665544
No 476
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.05 E-value=0.0011 Score=67.87 Aligned_cols=165 Identities=21% Similarity=0.296 Sum_probs=93.3
Q ss_pred hHHHHHhcCCC--------cChHHHHHHHHHHHHHHHHH--HHHH--HHh-hhhhc-cCCcccHHHHHHHHHHHHHHHH-
Q psy2519 426 PLFHREYSSGL--------YSAFQFYLSYILSSLPGLII--QAVL--FTV-ILYWI-SGLRNSLSVFLMAVLICILIIN- 490 (622)
Q Consensus 426 ~v~~rE~~~g~--------Y~~~~y~la~~l~~lp~~~~--~~~~--f~~-i~Y~~-~gl~~~~~~f~~f~~~~~l~~~- 490 (622)
..+.+|+++|. +++..++++|.++.....++ .... +.+ ..++. .|.+.+...++.......+..+
T Consensus 88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (277)
T PF12679_consen 88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLA 167 (277)
T ss_pred HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 35566666653 68899999999999876422 1111 111 11222 3445556655554444333333
Q ss_pred --HHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeee-cCCCCC--ccc--hhhhccCHHHHHHHHHHHHHhCCCcc
Q psy2519 491 --VATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFY-KLSSLP--PYF--VWIRYLSWLEYSNEALTITQWQGVTN 563 (622)
Q Consensus 491 --~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v-~~~~ip--~~~--~Wl~ylS~~~Ya~eal~~nef~~~~~ 563 (622)
+..+++.++|+.+++...|+.++..+............ ..++.. .+. ..+.+++|..+ ++.+......+..
T Consensus 168 ~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~- 245 (277)
T PF12679_consen 168 VLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGGF- 245 (277)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhcccc-
Confidence 45899999999999888888877766655543333322 111111 111 33456666542 2322222221100
Q ss_pred cccCCCCCCCCccChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q psy2519 564 ITCFDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLM 616 (622)
Q Consensus 564 ~~C~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~ 616 (622)
.+...|.++++++++.+++..+++..+++
T Consensus 246 ------------------------~~~~~~~~~~~~~~~~~v~l~la~~~F~r 274 (277)
T PF12679_consen 246 ------------------------VWLSTWPSLLILLAYTLVFLALAYYRFQR 274 (277)
T ss_pred ------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00346788999999999999999865544
No 477
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.99 E-value=1.3e-06 Score=91.35 Aligned_cols=157 Identities=25% Similarity=0.371 Sum_probs=0.0
Q ss_pred hhhhhh--HHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC---CcccHHHHHHHHHHHHHHHHHHHHH
Q psy2519 421 FPDMLP--LFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISG---LRNSLSVFLMAVLICILIINVATSC 495 (622)
Q Consensus 421 f~~er~--v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~g---l~~~~~~f~~f~~~~~l~~~~~~s~ 495 (622)
..+||. +..|-+..|. +...|++++.+..+...++..+++.++ +.| ++.. .++..++.+++..++..++
T Consensus 182 i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~ 255 (344)
T PF12698_consen 182 IVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISF 255 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHH
Confidence 345554 4444445664 889999999999999988888776664 334 4433 4555556777788889999
Q ss_pred HHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCc
Q psy2519 496 GIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCL 575 (622)
Q Consensus 496 g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~ 575 (622)
+.+++.++++...|..+++++..+.+.++|.+.+.+++|.+++|+.++.|..|..+++....+++
T Consensus 256 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~~~~--------------- 320 (344)
T PF12698_consen 256 GFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNIIYGD--------------- 320 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHHHhc---------------
Confidence 99999999999999888888888666667777778899999999999999999888875432110
Q ss_pred cChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHH
Q psy2519 576 EDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAF 611 (622)
Q Consensus 576 ~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~ 611 (622)
....|.++++++++.+++.++++
T Consensus 321 -------------~~~~~~~~~~l~~~~~v~~~l~~ 343 (344)
T PF12698_consen 321 -------------WSEIWISLIILLLFAVVYLLLAI 343 (344)
T ss_dssp ------------------------------------
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 12256677888888777776664
No 478
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.98 E-value=8.4e-06 Score=88.76 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=69.9
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----------ccc
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----------KFR 101 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----------~~r 101 (622)
+.+++++ +.+ ++|+.+.++|+| |||||||+++|+|..+++...-|.|-.+|+++.. ..|
T Consensus 143 i~aID~l-l~I-----~~GQ~igI~G~s-----GaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~r 211 (434)
T PRK07196 143 VNAINGL-LTI-----GKGQRVGLMAGS-----GVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAK 211 (434)
T ss_pred eeeccce-EeE-----ecceEEEEECCC-----CCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccce
Confidence 5688888 888 678888888776 8999999999999998753334667667766532 135
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHcC
Q psy2519 102 SACGFMYQHDLFSPSLTVYEHLYFMALLK 130 (622)
Q Consensus 102 ~~igyV~Q~~~l~~~lTV~E~l~f~~~l~ 130 (622)
..+++++|++..+..+++.|++.+.+...
T Consensus 212 svvv~~~~d~s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 212 SVVVAAPADESPLMRIKATELCHAIATYY 240 (434)
T ss_pred EEEEEecCCCChhhhHHHHHHHHHHHHHh
Confidence 67999999999999999999998877653
No 479
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.98 E-value=3.2e-05 Score=82.62 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+++++|-.+|+++++||+. |+.+....++ .+. .|.+|+.++|-. ......+|++-|-
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~-tGh~v~~T~Ha~--~~~~~~~Rl~~~~ 243 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAE-TGHLVFGTLHTN--SAAQTIERIIDVF 243 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHH-cCCcEEEEEcCC--CHHHHHHHHHHhc
Confidence 4667888999999999997 8887765444 344 699999999985 3446778887664
No 480
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.93 E-value=3.6e-05 Score=74.90 Aligned_cols=75 Identities=9% Similarity=-0.004 Sum_probs=54.4
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEecCC--CCCCCCCHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHD--LFSPSLTVYEHLY 124 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q~~--~l~~~lTV~E~l~ 124 (622)
++++.+++.|++ |||||||+++|+|+.++ ..|.|.+++..-.. ..+..++++.|.+ ...+..|+.+.+.
T Consensus 23 ~~g~~i~I~G~t-----GSGKTTll~aL~~~i~~---~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (186)
T cd01130 23 EARKNILISGGT-----GSGKTTLLNALLAFIPP---DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLR 94 (186)
T ss_pred hCCCEEEEECCC-----CCCHHHHHHHHHhhcCC---CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHH
Confidence 356666666665 89999999999999987 47999997743221 2345577776654 3567889999998
Q ss_pred HHHHcC
Q psy2519 125 FMALLK 130 (622)
Q Consensus 125 f~~~l~ 130 (622)
...+.+
T Consensus 95 ~~lR~~ 100 (186)
T cd01130 95 SALRMR 100 (186)
T ss_pred HHhccC
Confidence 877654
No 481
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.90 E-value=4.8e-06 Score=90.59 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=41.0
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee-EEEECCEecCc
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG-DIRVNGKPVEG 98 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G-~I~~~G~~~~~ 98 (622)
.++|++|++++ .+|+.++++|+ |||||||||+ .|+..|. +| +|.++|+++..
T Consensus 19 ~~vL~~Vsl~i-----~~GEiv~L~G~-----SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKEL-----PSSSLLFLCGS-----SGDGKSEILA--ENKRKFS---EGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceee-----cCCCEEEEECC-----CCCCHHHHHh--cCCCCCC---CCCEEEECCEECCC
Confidence 35789999999 56666666655 4899999999 7888773 56 89999999854
No 482
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.89 E-value=6.7e-05 Score=82.30 Aligned_cols=174 Identities=20% Similarity=0.175 Sum_probs=104.3
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe---cCc---------c
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP---VEG---------K 99 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~---~~~---------~ 99 (622)
..+++++ +.+ .+|++..++|++ |+|||||+++|+|..+++ .|.+...|+. +.. .
T Consensus 151 i~~iD~l-~~i-----~~Gq~~~I~G~s-----G~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~ 216 (440)
T TIGR01026 151 VRSIDGL-LTV-----GKGQRIGIFAGS-----GVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEG 216 (440)
T ss_pred eeeeeec-ccc-----CCCcEEEEECCC-----CCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccc
Confidence 5677777 666 567788888776 899999999999998874 5666665553 321 1
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh-HHHH
Q psy2519 100 FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG-GERK 178 (622)
Q Consensus 100 ~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg-Gqrq 178 (622)
+++.+-++.+.+. ++.+-..- + ..... +.+.+..-|- ++. -.+.+ ++- -|-+
T Consensus 217 l~~tvvv~~~~d~-----~p~~r~~~-~----------~~a~t-~AE~frd~G~-~Vl-l~~Ds--------lTr~A~A~ 269 (440)
T TIGR01026 217 LKRSVVVVATSDQ-----SPLLRLKG-A----------YVATA-IAEYFRDQGK-DVL-LLMDS--------VTRFAMAQ 269 (440)
T ss_pred cceEEEEEECCCC-----CHHHHHHH-H----------HHHHH-HHHHHHHCCC-CEE-EEEeC--------hHHHHHHH
Confidence 3344455555332 11111110 0 00011 1122222232 111 00111 111 1111
Q ss_pred HHHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCC-------EEEEEeccCcHHHHhhccceeeecCC
Q psy2519 179 RLSFATELLTDPALLLCDEP--TTGLDSFSASKLIRMMRELTSQRKK-------TVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 179 RvsIA~aL~~~P~lLlLDEP--TsgLD~~~~~~i~~~l~~l~~~~g~-------tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|++. +.+.|| +.|+||.....+.+++.+... .+. ||++.+||.. ..++|++..+.+|
T Consensus 270 -----REis-----l~~ge~P~~~Gypp~~~~~l~~l~ERag~-~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG 335 (440)
T TIGR01026 270 -----REIG-----LAAGEPPATKGYTPSVFSTLPRLLERAGA-SGKGSITAFYTVLVEGDDMN---EPIADSVRGILDG 335 (440)
T ss_pred -----HHHH-----HhcCCCCcccccChhHHHHHHHHHHHhcc-CCCCeeeEEEEEEccCcCCC---cchhhhhccccce
Confidence 1111 345675 459999999999999999886 567 8888999963 3478999999999
Q ss_pred ceEEecChHHH
Q psy2519 250 RTAFIGSKDAA 260 (622)
Q Consensus 250 ~iv~~G~~~~~ 260 (622)
+++.+.+.++.
T Consensus 336 ~ivLsr~la~~ 346 (440)
T TIGR01026 336 HIVLSRALAQR 346 (440)
T ss_pred EEEEecchhhC
Confidence 99999887654
No 483
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.88 E-value=2.3e-05 Score=85.40 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=62.2
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC---
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN--- 92 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~--- 92 (622)
+..+.++++..|..| +.+++.++ .+ .+|+...|+|++ ||||||||++|+++.+| ..|.|.+.
T Consensus 138 ~~~~r~~v~~~l~TG-i~aID~L~-~I-----~~Gqri~I~G~S-----GsGKTTLL~~Ia~l~~p---d~gvv~liGer 202 (450)
T PRK06002 138 PAMTRARVETGLRTG-VRVIDIFT-PL-----CAGQRIGIFAGS-----GVGKSTLLAMLARADAF---DTVVIALVGER 202 (450)
T ss_pred CCeEeecceEEcCCC-cEEeeeec-ee-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CeeeeeecccC
Confidence 456778899888655 66777774 55 577788888775 89999999999999988 47988886
Q ss_pred CEecCc--------cccccEEEEecCCC
Q psy2519 93 GKPVEG--------KFRSACGFMYQHDL 112 (622)
Q Consensus 93 G~~~~~--------~~r~~igyV~Q~~~ 112 (622)
|+++.. ..++.+++|+|.+.
T Consensus 203 grev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 203 GREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred CccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 455432 13568999999764
No 484
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.82 E-value=1.9e-05 Score=77.46 Aligned_cols=106 Identities=10% Similarity=-0.007 Sum_probs=61.5
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHH
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~ 143 (622)
||||||||.+.|.+.+. .|++ .++.+|+ ++..++..+........... +.....+.
T Consensus 8 ~GsGKSTl~~~l~~~l~-----~~~~---------------~v~~~D~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 63 (198)
T cd02023 8 SGSGKTTVAEEIIEQLG-----NPKV---------------VIISQDS-YYKDLSHEELEERKNNNYDH---PDAFDFDL 63 (198)
T ss_pred CCCCHHHHHHHHHHHhC-----CCCe---------------EEEEecc-cccccccccHHHhccCCCCC---CCcccHHH
Confidence 58999999999999872 2222 3333432 22223333332221111110 00111223
Q ss_pred HHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q psy2519 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204 (622)
Q Consensus 144 v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~ 204 (622)
..+.++.+...+..+.+.-+ .|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 64 ~~~~l~~l~~~~~~~~p~~d--------~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 64 LISHLQDLKNGKSVEIPVYD--------FKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHHCCCCEeccccc--------cccCcccCCce---ecCCCCEEEEechhhccch
Confidence 34666777665555555444 88888876655 5688999999999999986
No 485
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.73 E-value=5.9e-05 Score=89.60 Aligned_cols=68 Identities=24% Similarity=0.145 Sum_probs=51.8
Q ss_pred ccChHHHHHHHHHHHHhh--CCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 171 VLSGGERKRLSFATELLT--DPALLLCDEP---TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~--~P~lLlLDEP---TsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
|+|-=+.....++..|-. +++++|+||| |+.+|..+ ....+++.+.+..|.+++++||.. ++.+++++
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 377777777777777665 8999999999 99999444 456677777763468999999984 77778775
No 486
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=97.70 E-value=7.7e-05 Score=65.39 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=41.3
Q ss_pred CCccChHHHHh-hcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2519 573 PCLEDGAQVIN-NMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619 (622)
Q Consensus 573 ~c~~~g~~~L~-~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~ 619 (622)
...++|+++|+ .++++.+|+|+|++|+++|+++|.++.++++.+.+.
T Consensus 28 ~~~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~ 75 (103)
T PF06422_consen 28 STYVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKF 75 (103)
T ss_pred ccEEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34459999997 799999999999999999999999999999876544
No 487
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.63 E-value=0.00074 Score=80.29 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=44.3
Q ss_pred HHhhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 185 ELLTDPALLLCDEPTTGLD-SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 185 aL~~~P~lLlLDEPTsgLD-~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
.+..+|+++++|||...|| +..+..+.+.++++.+ .|..++++||++ +++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~-~d~~ 689 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSV-EDAS 689 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHH
Confidence 3557899999999999999 8999999999999987 788999999997 3443
No 488
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.52 E-value=0.0018 Score=66.62 Aligned_cols=55 Identities=7% Similarity=0.094 Sum_probs=40.0
Q ss_pred HHHHHHHHHHh--hCCCeEEEeCCCCCCCH-------H-HHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 177 RKRLSFATELL--TDPALLLCDEPTTGLDS-------F-SASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 177 rqRvsIA~aL~--~~P~lLlLDEPTsgLD~-------~-~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
.+-+..++.++ .+|+++++|..+.-.+. . ...+++..|++++++.|.||++++|-
T Consensus 126 ~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 126 DSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred HHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 34445555555 47999999998764432 1 24567788999988889999999985
No 489
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.51 E-value=0.00022 Score=79.00 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=46.3
Q ss_pred hCCCeEEEeCCCCCC---------CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH-------HHHhhccceeeecCCc
Q psy2519 188 TDPALLLCDEPTTGL---------DSFSASKLIRMMRELTSQRKKTVLCTIHQPSS-------ELIDMFDKIILLADSR 250 (622)
Q Consensus 188 ~~P~lLlLDEPTsgL---------D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~-------~i~~~~D~v~~L~~G~ 250 (622)
.+|+++++|.-++=. +....+++...|.+++++.|.|+++++|...+ .+.+++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999765421 12345667777888888889999999996422 2677899999997654
No 490
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.47 E-value=0.00028 Score=81.07 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=68.5
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCCCCCC-----ceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHH
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC-----IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 125 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~-----~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f 125 (622)
..+++.|++ |+|||||.+++.+..++.. ...+-|.++|..+....+ ..++-.+
T Consensus 176 ~~vlL~Gp~-----GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~-----------------~i~~~ll 233 (615)
T TIGR02903 176 QHIILYGPP-----GVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR-----------------EVTNPLL 233 (615)
T ss_pred CeEEEECCC-----CCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH-----------------HHhHHhc
Confidence 345555554 8999999999998875410 012335555543311000 0011111
Q ss_pred HHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q psy2519 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205 (622)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~ 205 (622)
+. .. +...+.+.+.++..|+.+..+..+.. +||| +|+||| +..||+.
T Consensus 234 g~-------~~-~~~~~~a~~~l~~~gl~~~~~g~v~~--------asgG----------------vL~LDE-i~~Ld~~ 280 (615)
T TIGR02903 234 GS-------VH-DPIYQGARRDLAETGVPEPKTGLVTD--------AHGG----------------VLFIDE-IGELDPL 280 (615)
T ss_pred CC-------cc-HHHHHHHHHHHHHcCCCchhcCchhh--------cCCC----------------eEEEec-cccCCHH
Confidence 10 01 11122345567888988777776655 8988 999999 8999999
Q ss_pred HHHHHHHHHHH
Q psy2519 206 SASKLIRMMRE 216 (622)
Q Consensus 206 ~~~~i~~~l~~ 216 (622)
.+..+.+.+++
T Consensus 281 ~Q~~Ll~~Le~ 291 (615)
T TIGR02903 281 LQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 491
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.46 E-value=0.003 Score=68.20 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=65.1
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGL-----DSFSASKL----------IRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgL-----D~~~~~~i----------~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
=||..-|=.+|..||=...++||+||=||+- |...+.-+ .+.++++.++.|.+.|+|+-- +...
T Consensus 323 ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgdy 401 (448)
T PF09818_consen 323 ASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGDY 401 (448)
T ss_pred CCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chhh
Confidence 7999999999999999999999999999964 33334444 566788877789988888876 5688
Q ss_pred HhhccceeeecCCce
Q psy2519 237 IDMFDKIILLADSRT 251 (622)
Q Consensus 237 ~~~~D~v~~L~~G~i 251 (622)
++.+|+|++|++=+.
T Consensus 402 ~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 402 FDVADRVIMMDEYRP 416 (448)
T ss_pred HhhCCEEEEecCccc
Confidence 899999999987554
No 492
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.45 E-value=0.00042 Score=85.60 Aligned_cols=38 Identities=8% Similarity=0.145 Sum_probs=28.0
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.+.+.|.|++ |+|||||++.+.+..... .+|.+.+++.
T Consensus 207 ~~vvgI~G~g-----GiGKTTLA~~l~~~l~~~--F~g~vfv~~~ 244 (1153)
T PLN03210 207 VRMVGIWGSS-----GIGKTTIARALFSRLSRQ--FQSSVFIDRA 244 (1153)
T ss_pred eEEEEEEcCC-----CCchHHHHHHHHHHHhhc--CCeEEEeecc
Confidence 3445555554 899999999998877653 4799988764
No 493
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.36 E-value=0.00059 Score=73.53 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=45.0
Q ss_pred hCCCeEEEeCCC----CCCC-----HHHHHHHHHHHHHHHhcCCCEEEEEeccCc-------HHHHhhccceeeecCC
Q psy2519 188 TDPALLLCDEPT----TGLD-----SFSASKLIRMMRELTSQRKKTVLCTIHQPS-------SELIDMFDKIILLADS 249 (622)
Q Consensus 188 ~~P~lLlLDEPT----sgLD-----~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~-------~~i~~~~D~v~~L~~G 249 (622)
.+|+++++|+-. ..+| ....+++...|.+++++.|.|++++.|-.. ..+.+++|-|+.+...
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 479999999963 2333 234456677788888888999999999522 1367889999988643
No 494
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.36 E-value=0.0022 Score=62.20 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCC-cccCCccCCcCCCCccccChHHHHHHH--HHHHHhh-CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy2519 143 LINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLS--FATELLT-DPALLLCDEPTTGLDSFSASKLIRMMRELT 218 (622)
Q Consensus 143 ~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gLSgGqrqRvs--IA~aL~~-~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~ 218 (622)
.+.+.++..++. -...+++.. +|+||+|++. +++.+-. ++++ .|+|++|.....++.+.|.++.
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl--------~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADK--------LKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred HHHHHHHHcCCcEEEEEECccc--------CCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHh
Confidence 344556666654 223334444 8999999987 5555443 3343 3999999999999999999987
Q ss_pred h
Q psy2519 219 S 219 (622)
Q Consensus 219 ~ 219 (622)
+
T Consensus 194 ~ 194 (196)
T PRK00454 194 A 194 (196)
T ss_pred c
Confidence 6
No 495
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.32 E-value=0.00013 Score=70.42 Aligned_cols=65 Identities=8% Similarity=0.021 Sum_probs=43.6
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCcc--c-cccEEEEecCCCCCCCCCHHHHHHHH
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGK--F-RSACGFMYQHDLFSPSLTVYEHLYFM 126 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~--~-r~~igyV~Q~~~l~~~lTV~E~l~f~ 126 (622)
|+.+.+.|++ |||||||+++|+|++.+ +.++|.++... . +...|+.+|+....++.++.+++.+.
T Consensus 3 ge~i~l~G~s-----GsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 3 GESYILMGVS-----GSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CcEEEEECCC-----CCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 4455555554 89999999999998765 36777776431 2 22356777776556666666666654
No 496
>PRK13764 ATPase; Provisional
Probab=97.31 E-value=0.0012 Score=75.00 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=49.3
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEec---------------cCcHHHHhhccceeeecCCc
Q psy2519 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH---------------QPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 186 L~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH---------------~~~~~i~~~~D~v~~L~~G~ 250 (622)
|..+|+++++||.-..-| ++.+..++. .|..++.|.| ++ ..+...+|+++.+++|+
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~ 391 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGE 391 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCE
Confidence 678899999999985322 445555554 5778999999 64 46778899999999999
Q ss_pred e--EEecChH
Q psy2519 251 T--AFIGSKD 258 (622)
Q Consensus 251 i--v~~G~~~ 258 (622)
+ +++++..
T Consensus 392 I~~v~~~~~~ 401 (602)
T PRK13764 392 VSKVYDLEFT 401 (602)
T ss_pred EEEEEeeeeE
Confidence 9 7777643
No 497
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.30 E-value=0.00062 Score=74.53 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=68.2
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC---EecCc----cc---c
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG---KPVEG----KF---R 101 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G---~~~~~----~~---r 101 (622)
+.+++++ +.+ ++|++..++|++ |+|||||+++|+|..++. ..|.|.+.| +++.. .+ .
T Consensus 152 i~aID~~-l~i-----~~Gq~i~I~G~s-----G~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g 218 (442)
T PRK06315 152 VRCIDGM-LTV-----ARGQRIGIFAGA-----GVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEG 218 (442)
T ss_pred EEEEecc-ccc-----cCCcEEEEECCC-----CCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcC
Confidence 4556665 566 577788888776 899999999999988542 247777745 55432 11 2
Q ss_pred ccEEEE-----ecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC
Q psy2519 102 SACGFM-----YQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM 154 (622)
Q Consensus 102 ~~igyV-----~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 154 (622)
.+.+++ +|++ .+.|.+ +...++-..+.+........+...+..+++++++|.
T Consensus 219 ~~~svvvvats~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 219 MKRSVIVVSTSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CceEEEEEeCCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 334555 8875 355554 555554444333211112345667888999999994
No 498
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=97.26 E-value=0.05 Score=56.03 Aligned_cols=250 Identities=18% Similarity=0.188 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhh-cCC--CC-ChhhHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q psy2519 347 IIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFA-GSI--DL-TQRGVQSVQGALFIMVTENTFSPMYSVLSQFP 422 (622)
Q Consensus 347 Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~-~~~--~~-~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~ 422 (622)
++..+.+++++...|+|.....-....+..++.....+. ... ++ ....-+.. ....+......+.+.+.. +.
T Consensus 3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~l 78 (278)
T COG1277 3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLL-FLSSVSLVFSFFLPLLAI---LL 78 (278)
T ss_pred hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhh-hhhhHHHHHHHHHHHHHH---HH
Confidence 577889999999999998876655444555555555552 110 10 11111111 121122222222222222 21
Q ss_pred hhhhHHHHHhcCCC--------cChHHHHHHHHHHHHHHHHHHHHHHH---hhhhhccCCcc---cHHHHHHHHHHHHHH
Q psy2519 423 DMLPLFHREYSSGL--------YSAFQFYLSYILSSLPGLIIQAVLFT---VILYWISGLRN---SLSVFLMAVLICILI 488 (622)
Q Consensus 423 ~er~v~~rE~~~g~--------Y~~~~y~la~~l~~lp~~~~~~~~f~---~i~Y~~~gl~~---~~~~f~~f~~~~~l~ 488 (622)
. -.++.+|+.+|. .++..-+++|.++-+-..++..++.. ...+...|..+ +...+..+....++.
T Consensus 79 ~-~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 157 (278)
T COG1277 79 G-ADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLY 157 (278)
T ss_pred c-cchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH
Confidence 1 356777777775 56677788998888765544444433 22333344443 344567777777888
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeec-----CCCCCccchhhhccCHHHHHHHHHHHHHhCCCcc
Q psy2519 489 INVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYK-----LSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTN 563 (622)
Q Consensus 489 ~~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~-----~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~ 563 (622)
..+..+++.+++....+...+..++-.+...+.+..+.... .....+....+.+.+|..+..+......... ..
T Consensus 158 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~ 236 (278)
T COG1277 158 GLVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLLAELAFTILLQS-GF 236 (278)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhccCHHHHHHHHhhhhcccc-cc
Confidence 88888999999999998888877776666655544433322 1112225677888899988888765432210 00
Q ss_pred cccCCCCCCCCccChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q psy2519 564 ITCFDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMK 617 (622)
Q Consensus 564 ~~C~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~ 617 (622)
.+. ...........|.++.+++++.+++..++++..+++
T Consensus 237 ----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~ 275 (278)
T COG1277 237 ----SDS-----------ILTLNESLLLAWFNILILIIYILIFLSIAYLIFKRR 275 (278)
T ss_pred ----ccc-----------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000 000111223467889999999999999988776654
No 499
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.24 E-value=0.00039 Score=64.84 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=32.4
Q ss_pred cChHHHHHHHHHHHHh-----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2519 172 LSGGERKRLSFATELL-----TDPALLLCDEPTTGLDSFSASKLIRMMREL 217 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~-----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l 217 (622)
++++++++.....+.. ..|+++ |+|++|.....++.+.|.++
T Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 123 LKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 7889888876665533 345555 99999999999999988764
No 500
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.22 E-value=0.00071 Score=80.74 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=55.7
Q ss_pred HHHHHhhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh--hccceeeecCCceEE
Q psy2519 182 FATELLTDPALLLCDEPTTGL-DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID--MFDKIILLADSRTAF 253 (622)
Q Consensus 182 IA~aL~~~P~lLlLDEPTsgL-D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~--~~D~v~~L~~G~iv~ 253 (622)
|++++..+|+++++|||+.+| |+..+..+.+.++++++ .|.+++++||++ +++.+ .++.++-..+.++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~-~d~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSL-SDAANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHhhCchHHHHHHcCCcceec
Confidence 677888999999999999999 79999999999999987 688999999997 45544 344444444455543
Done!