Query psy2519
Match_columns 622
No_of_seqs 361 out of 3434
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 18:16:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.4E-48 4.9E-53 412.9 26.0 221 16-261 23-252 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 1.2E-48 4.3E-53 413.1 24.9 218 17-261 4-227 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 2.7E-48 9.3E-53 413.2 26.7 218 17-261 3-222 (381)
4 3tif_A Uncharacterized ABC tra 100.0 1.2E-47 4E-52 385.8 23.6 221 17-260 1-232 (235)
5 3gfo_A Cobalt import ATP-bindi 100.0 1.7E-47 5.8E-52 392.6 23.0 219 17-261 7-232 (275)
6 1z47_A CYSA, putative ABC-tran 100.0 3.2E-47 1.1E-51 402.5 25.5 219 17-261 14-234 (355)
7 2olj_A Amino acid ABC transpor 100.0 4.8E-47 1.6E-51 387.0 26.0 217 17-261 24-247 (263)
8 1b0u_A Histidine permease; ABC 100.0 4E-47 1.4E-51 387.9 25.1 217 17-261 6-241 (262)
9 2it1_A 362AA long hypothetical 100.0 4.4E-47 1.5E-51 402.8 26.1 218 17-261 3-222 (362)
10 2yyz_A Sugar ABC transporter, 100.0 3.5E-47 1.2E-51 403.1 24.8 218 17-261 3-222 (359)
11 1g29_1 MALK, maltose transport 100.0 1.2E-46 4.1E-51 401.5 26.5 218 17-261 3-228 (372)
12 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-46 3.8E-51 383.0 24.5 219 16-262 14-235 (256)
13 1v43_A Sugar-binding transport 100.0 7.9E-47 2.7E-51 402.2 23.2 218 17-261 11-230 (372)
14 1oxx_K GLCV, glucose, ABC tran 100.0 6.8E-47 2.3E-51 400.9 22.5 218 17-261 3-229 (353)
15 4g1u_C Hemin import ATP-bindin 100.0 7.3E-47 2.5E-51 386.6 21.2 216 17-261 11-236 (266)
16 2pcj_A ABC transporter, lipopr 100.0 3E-46 1E-50 372.9 24.1 211 17-256 4-222 (224)
17 3d31_A Sulfate/molybdate ABC t 100.0 2.3E-46 7.9E-51 395.6 23.1 214 17-261 1-216 (348)
18 2onk_A Molybdate/tungstate ABC 100.0 2.6E-46 8.9E-51 376.8 21.8 213 17-261 1-215 (240)
19 1g6h_A High-affinity branched- 100.0 1.5E-46 5E-51 382.9 19.8 218 17-259 7-239 (257)
20 1ji0_A ABC transporter; ATP bi 100.0 3.1E-46 1.1E-50 376.6 20.7 216 17-261 6-227 (240)
21 2yz2_A Putative ABC transporte 100.0 4.4E-45 1.5E-49 373.7 21.0 219 17-262 2-227 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 6.6E-45 2.2E-49 374.5 17.2 219 17-260 21-250 (279)
23 2ixe_A Antigen peptide transpo 100.0 1.7E-44 5.8E-49 370.2 19.5 223 15-261 14-244 (271)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 2.7E-44 9.4E-49 364.6 19.9 219 17-259 3-230 (250)
25 2zu0_C Probable ATP-dependent 100.0 1.3E-43 4.6E-48 362.8 22.8 230 14-269 17-260 (267)
26 2nq2_C Hypothetical ABC transp 100.0 1.4E-43 4.9E-48 359.7 22.3 210 17-260 4-215 (253)
27 3nh6_A ATP-binding cassette SU 100.0 7.6E-44 2.6E-48 370.3 18.7 216 15-262 51-277 (306)
28 2qi9_C Vitamin B12 import ATP- 100.0 1.4E-43 4.7E-48 358.7 19.9 206 17-260 4-220 (249)
29 2ff7_A Alpha-hemolysin translo 100.0 1.9E-43 6.5E-48 357.6 18.4 214 17-261 7-231 (247)
30 1sgw_A Putative ABC transporte 100.0 2.1E-43 7.3E-48 349.3 16.2 204 14-251 7-210 (214)
31 1mv5_A LMRA, multidrug resista 100.0 3.6E-43 1.2E-47 354.9 15.8 217 18-261 2-225 (243)
32 2pjz_A Hypothetical protein ST 100.0 2E-42 6.7E-47 352.9 19.3 206 17-261 1-214 (263)
33 2ghi_A Transport protein; mult 100.0 9.1E-42 3.1E-46 347.9 20.0 216 14-261 14-241 (260)
34 3gd7_A Fusion complex of cysti 100.0 2.3E-42 8E-47 370.0 13.8 219 15-262 17-242 (390)
35 2pze_A Cystic fibrosis transme 100.0 1.2E-40 4.1E-45 333.5 17.2 204 17-261 6-217 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.7E-40 5.9E-45 334.0 17.3 206 17-261 3-216 (237)
37 3qf4_A ABC transporter, ATP-bi 100.0 8.1E-41 2.8E-45 378.3 15.5 217 15-262 339-566 (587)
38 4a82_A Cystic fibrosis transme 100.0 2.2E-40 7.5E-45 374.4 16.6 217 15-262 337-564 (578)
39 3b60_A Lipid A export ATP-bind 100.0 6.9E-40 2.3E-44 370.7 19.1 218 15-262 339-567 (582)
40 3b5x_A Lipid A export ATP-bind 100.0 8.7E-40 3E-44 369.9 18.8 217 15-261 339-566 (582)
41 2yl4_A ATP-binding cassette SU 100.0 1.5E-39 5.1E-44 368.9 17.7 216 18-261 342-569 (595)
42 3qf4_B Uncharacterized ABC tra 100.0 9.7E-40 3.3E-44 370.4 15.5 216 15-262 352-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.2E-37 4.3E-42 321.7 17.4 203 13-261 36-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 8E-38 2.7E-42 382.0 15.2 220 14-262 1073-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 1.1E-36 3.6E-41 372.1 18.2 218 13-261 411-640 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 3.1E-36 1.1E-40 367.2 19.6 219 15-262 385-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 6.1E-36 2.1E-40 364.6 16.8 219 15-262 1028-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 3.2E-35 1.1E-39 332.0 20.5 205 17-262 357-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 4E-35 1.4E-39 327.9 17.6 205 17-262 287-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.6E-34 5.4E-39 322.4 17.5 206 17-261 269-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 6.3E-34 2.2E-38 321.0 18.6 208 21-262 350-559 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 2.5E-33 8.6E-38 322.1 15.4 220 20-261 18-297 (670)
53 3bk7_A ABC transporter ATP-bin 100.0 2.2E-33 7.7E-38 317.0 10.6 192 21-250 95-305 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 3.2E-33 1.1E-37 312.4 11.0 196 17-250 20-235 (538)
55 2iw3_A Elongation factor 3A; a 100.0 7E-32 2.4E-36 315.1 18.7 197 18-262 436-635 (986)
56 2iw3_A Elongation factor 3A; a 100.0 6.6E-32 2.2E-36 315.3 11.8 207 17-256 671-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 9.6E-31 3.3E-35 300.6 17.6 197 31-261 334-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 5.8E-30 2E-34 288.8 10.5 199 21-254 81-302 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 7.7E-30 2.6E-34 284.6 8.6 174 48-253 23-217 (538)
60 2r6f_A Excinuclease ABC subuni 100.0 1.5E-28 5.2E-33 284.8 15.4 198 34-261 639-941 (972)
61 3pih_A Uvrabc system protein A 100.0 4E-28 1.4E-32 283.2 17.3 200 32-261 597-901 (916)
62 2vf7_A UVRA2, excinuclease ABC 100.0 3E-28 1E-32 282.1 15.9 109 142-261 708-826 (842)
63 2npi_A Protein CLP1; CLP1-PCF1 99.9 8.4E-31 2.9E-35 286.9 -8.9 198 15-260 116-336 (460)
64 2ygr_A Uvrabc system protein A 99.9 5.4E-28 1.9E-32 281.2 13.8 126 116-261 824-959 (993)
65 4aby_A DNA repair protein RECN 99.9 1E-25 3.6E-30 244.1 15.9 208 32-255 48-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.3E-23 4.5E-28 224.1 15.9 79 172-253 280-364 (365)
67 1e69_A Chromosome segregation 99.9 7.9E-23 2.7E-27 214.5 12.3 85 172-260 220-311 (322)
68 3b85_A Phosphate starvation-in 99.9 6.2E-26 2.1E-30 223.3 -13.3 140 30-232 11-158 (208)
69 1znw_A Guanylate kinase, GMP k 99.9 2.7E-25 9.2E-30 218.3 -14.9 183 30-247 7-202 (207)
70 3pih_A Uvrabc system protein A 99.9 4.9E-22 1.7E-26 232.0 9.8 164 69-261 382-559 (916)
71 1ye8_A Protein THEP1, hypothet 99.9 1.4E-22 4.9E-27 194.4 3.8 146 53-253 3-159 (178)
72 1tq4_A IIGP1, interferon-induc 99.9 3.3E-24 1.1E-28 230.9 -8.5 177 32-249 36-254 (413)
73 2dpy_A FLII, flagellum-specifi 99.8 2.3E-23 7.9E-28 226.7 -9.9 192 16-260 130-342 (438)
74 4gp7_A Metallophosphoesterase; 99.8 6.9E-22 2.3E-26 188.3 1.3 64 172-237 84-163 (171)
75 2v9p_A Replication protein E1; 99.8 1.8E-24 6.2E-29 224.0 -18.2 170 16-266 100-270 (305)
76 3sop_A Neuronal-specific septi 99.8 9.8E-23 3.3E-27 208.4 -7.3 145 53-232 5-150 (270)
77 2r6f_A Excinuclease ABC subuni 99.8 6.4E-20 2.2E-24 213.0 15.3 136 114-261 449-599 (972)
78 3b9q_A Chloroplast SRP recepto 99.8 6.9E-22 2.4E-26 205.2 -2.0 167 48-252 98-285 (302)
79 2vf7_A UVRA2, excinuclease ABC 99.8 4.6E-20 1.6E-24 213.8 9.8 178 64-261 271-474 (842)
80 2ygr_A Uvrabc system protein A 99.8 1.2E-19 4.1E-24 211.4 13.2 139 112-262 464-617 (993)
81 2og2_A Putative signal recogni 99.8 9.5E-21 3.3E-25 200.5 -0.6 166 48-251 155-341 (359)
82 3aez_A Pantothenate kinase; tr 99.8 1.7E-22 6E-27 210.7 -14.5 190 13-250 39-246 (312)
83 2pt7_A CAG-ALFA; ATPase, prote 99.8 4.8E-20 1.6E-24 193.8 2.6 141 20-252 151-293 (330)
84 3qkt_A DNA double-strand break 99.8 4.5E-18 1.5E-22 179.6 15.8 73 172-247 249-327 (339)
85 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 9.3E-19 3.2E-23 162.6 9.0 76 172-250 58-141 (148)
86 2obl_A ESCN; ATPase, hydrolase 99.7 8.2E-20 2.8E-24 193.1 -0.7 191 16-260 44-253 (347)
87 1cr0_A DNA primase/helicase; R 99.7 2.2E-19 7.4E-24 185.7 1.7 184 33-251 23-237 (296)
88 2o5v_A DNA replication and rep 99.7 6.9E-18 2.4E-22 178.8 12.0 81 171-260 265-354 (359)
89 1z6g_A Guanylate kinase; struc 99.7 6.1E-22 2.1E-26 196.2 -18.6 177 33-246 11-207 (218)
90 2o8b_B DNA mismatch repair pro 99.7 5E-19 1.7E-23 210.0 1.2 180 16-259 749-939 (1022)
91 1tf7_A KAIC; homohexamer, hexa 99.7 3.2E-20 1.1E-24 207.3 -13.0 180 18-250 13-211 (525)
92 2jeo_A Uridine-cytidine kinase 99.7 1.9E-18 6.5E-23 173.9 0.8 179 29-263 9-188 (245)
93 1tf7_A KAIC; homohexamer, hexa 99.7 2.7E-17 9.3E-22 183.6 8.5 152 48-250 279-444 (525)
94 2qnr_A Septin-2, protein NEDD5 99.7 1.1E-18 3.8E-23 181.2 -4.5 164 21-233 2-168 (301)
95 2eyu_A Twitching motility prot 99.7 1.3E-17 4.5E-22 169.5 3.5 142 17-248 5-147 (261)
96 3thx_A DNA mismatch repair pro 99.7 2.1E-17 7.3E-22 193.8 5.4 87 172-260 722-811 (934)
97 1rj9_A FTSY, signal recognitio 99.6 1.7E-17 5.8E-22 172.3 -1.1 148 49-232 101-258 (304)
98 3szr_A Interferon-induced GTP- 99.6 1.5E-18 5.3E-23 196.6 -9.8 193 17-262 10-237 (608)
99 2ehv_A Hypothetical protein PH 99.6 3.2E-17 1.1E-21 164.0 0.3 159 48-247 28-206 (251)
100 3asz_A Uridine kinase; cytidin 99.6 1.1E-18 3.7E-23 171.0 -10.7 145 48-232 4-161 (211)
101 3thx_B DNA mismatch repair pro 99.6 2.2E-17 7.6E-22 193.2 -2.3 79 172-253 736-816 (918)
102 4a74_A DNA repair and recombin 99.6 1.4E-16 4.6E-21 157.4 1.9 152 48-250 23-201 (231)
103 3kta_B Chromosome segregation 99.6 3.6E-15 1.2E-19 142.0 9.8 77 170-250 63-145 (173)
104 1ewq_A DNA mismatch repair pro 99.6 4.8E-16 1.6E-20 179.3 2.8 162 15-255 548-717 (765)
105 4ad8_A DNA repair protein RECN 99.6 4E-15 1.4E-19 165.7 9.4 77 169-249 394-473 (517)
106 2i3b_A HCR-ntpase, human cance 99.5 7.7E-17 2.6E-21 155.9 -6.9 156 50-255 1-169 (189)
107 1nlf_A Regulatory protein REPA 99.5 1.9E-14 6.6E-19 147.3 9.6 149 48-232 28-181 (279)
108 2qag_C Septin-7; cell cycle, c 99.5 1.3E-15 4.4E-20 164.5 -0.7 163 16-231 10-176 (418)
109 1pui_A ENGB, probable GTP-bind 99.5 1.8E-16 6.1E-21 154.4 -6.8 175 17-224 3-202 (210)
110 1pzn_A RAD51, DNA repair and r 99.5 1.3E-15 4.5E-20 161.2 -0.8 158 48-256 129-309 (349)
111 1wb9_A DNA mismatch repair pro 99.5 5.7E-15 1.9E-19 171.3 3.5 160 30-257 593-753 (800)
112 2w0m_A SSO2452; RECA, SSPF, un 99.5 2.9E-15 9.9E-20 147.8 -0.0 78 172-249 104-192 (235)
113 3jvv_A Twitching mobility prot 99.4 3.3E-14 1.1E-18 150.5 5.4 126 48-249 121-246 (356)
114 2bdt_A BH3686; alpha-beta prot 99.4 3E-16 1E-20 151.0 -11.7 170 52-260 4-182 (189)
115 3auy_A DNA double-strand break 99.4 4E-13 1.4E-17 143.3 10.8 76 171-250 280-363 (371)
116 1s96_A Guanylate kinase, GMP k 99.4 2.2E-14 7.6E-19 141.9 -1.7 146 48-265 14-163 (219)
117 1w1w_A Structural maintenance 99.4 1E-12 3.5E-17 142.9 9.8 74 171-247 333-410 (430)
118 2gza_A Type IV secretion syste 99.4 1.3E-13 4.5E-18 146.5 2.5 154 19-252 137-305 (361)
119 1lw7_A Transcriptional regulat 99.4 1.6E-16 5.5E-21 169.3 -20.2 162 36-248 159-343 (365)
120 1zp6_A Hypothetical protein AT 99.3 2.2E-15 7.7E-20 144.7 -11.0 149 48-230 7-159 (191)
121 2qag_B Septin-6, protein NEDD5 99.3 9.1E-14 3.1E-18 149.6 -1.0 191 15-231 14-218 (427)
122 2cvh_A DNA repair and recombin 99.3 1.1E-12 3.8E-17 128.3 6.8 78 172-249 85-185 (220)
123 1nij_A Hypothetical protein YJ 99.3 3.3E-16 1.1E-20 163.8 -19.9 158 52-240 6-196 (318)
124 2bbw_A Adenylate kinase 4, AK4 99.3 4.9E-15 1.7E-19 148.8 -11.2 145 50-219 27-198 (246)
125 2rcn_A Probable GTPase ENGC; Y 99.3 1.2E-12 4E-17 138.2 5.0 113 49-186 214-328 (358)
126 2ewv_A Twitching motility prot 99.3 1.7E-12 5.8E-17 138.4 5.3 125 48-248 134-258 (372)
127 3e70_C DPA, signal recognition 99.2 1.5E-12 5.1E-17 136.4 2.4 142 48-231 127-278 (328)
128 2qm8_A GTPase/ATPase; G protei 99.2 2.4E-14 8.1E-19 150.8 -14.0 174 17-219 29-260 (337)
129 1n0w_A DNA repair protein RAD5 99.2 1.3E-11 4.6E-16 122.5 6.0 78 172-250 99-210 (243)
130 2yhs_A FTSY, cell division pro 99.2 9.1E-13 3.1E-17 143.7 -4.3 178 36-258 284-475 (503)
131 1sxj_E Activator 1 40 kDa subu 99.1 3.5E-11 1.2E-15 126.7 6.8 145 52-243 38-185 (354)
132 2f1r_A Molybdopterin-guanine d 99.1 2.6E-13 9.1E-18 128.9 -8.6 136 52-220 4-162 (171)
133 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 2.7E-13 9.2E-18 145.0 -10.8 165 48-258 18-209 (392)
134 1in4_A RUVB, holliday junction 99.1 7.1E-13 2.4E-17 139.4 -7.8 199 16-264 17-223 (334)
135 1htw_A HI0065; nucleotide-bind 99.1 1.9E-12 6.4E-17 121.4 -4.6 88 19-125 9-97 (158)
136 1udx_A The GTP-binding protein 99.1 4.8E-11 1.7E-15 128.6 5.1 170 35-244 147-320 (416)
137 2yv5_A YJEQ protein; hydrolase 99.1 3.5E-12 1.2E-16 132.2 -4.5 117 49-185 164-301 (302)
138 1p9r_A General secretion pathw 99.0 3.8E-13 1.3E-17 145.3 -14.3 148 17-194 143-314 (418)
139 3ec2_A DNA replication protein 99.0 1.4E-11 4.9E-16 117.2 -2.0 48 187-235 98-146 (180)
140 1odf_A YGR205W, hypothetical 3 99.0 1E-11 3.5E-16 127.9 -3.5 119 64-206 40-169 (290)
141 2kjq_A DNAA-related protein; s 99.0 1.8E-10 6.2E-15 106.7 4.4 45 188-234 82-127 (149)
142 2oap_1 GSPE-2, type II secreti 99.0 2.6E-13 8.9E-18 150.3 -19.1 180 33-241 248-458 (511)
143 3lda_A DNA repair protein RAD5 98.9 2.5E-09 8.7E-14 114.7 10.8 63 188-250 272-364 (400)
144 1u0l_A Probable GTPase ENGC; p 98.9 8.4E-11 2.9E-15 121.7 -3.3 100 49-163 168-291 (301)
145 1sq5_A Pantothenate kinase; P- 98.8 3.5E-11 1.2E-15 125.0 -9.9 105 13-130 33-156 (308)
146 2x8a_A Nuclear valosin-contain 98.8 1.5E-12 5.2E-17 133.1 -20.7 142 30-213 31-189 (274)
147 1t9h_A YLOQ, probable GTPase E 98.7 4.8E-10 1.6E-14 116.0 -2.6 115 48-179 171-303 (307)
148 3c8u_A Fructokinase; YP_612366 98.7 9.7E-11 3.3E-15 114.3 -9.1 163 48-264 20-183 (208)
149 2dr3_A UPF0273 protein PH0284; 98.6 1.1E-08 3.9E-13 101.3 3.0 61 188-248 127-196 (247)
150 2r6a_A DNAB helicase, replicat 98.6 2E-07 6.7E-12 101.9 13.0 100 142-251 274-401 (454)
151 1lvg_A Guanylate kinase, GMP k 98.6 6.8E-12 2.3E-16 121.8 -21.4 57 182-248 116-173 (198)
152 2ius_A DNA translocase FTSK; n 98.5 2.6E-09 9E-14 117.5 -4.3 157 49-233 166-343 (512)
153 1oix_A RAS-related protein RAB 98.5 2E-08 6.8E-13 96.2 1.5 44 172-217 146-189 (191)
154 1iy2_A ATP-dependent metallopr 98.5 3.8E-11 1.3E-15 122.6 -19.7 132 21-192 53-190 (278)
155 1ixz_A ATP-dependent metallopr 98.4 5.6E-11 1.9E-15 119.4 -19.5 140 17-198 25-170 (254)
156 2px0_A Flagellar biosynthesis 98.4 4.2E-07 1.4E-11 93.6 9.1 141 49-254 104-247 (296)
157 1vma_A Cell division protein F 98.4 1.2E-07 4.2E-12 98.0 4.8 108 49-219 103-213 (306)
158 3k1j_A LON protease, ATP-depen 98.3 1E-08 3.6E-13 116.0 -6.6 166 25-216 40-227 (604)
159 2zr9_A Protein RECA, recombina 98.3 7.5E-07 2.5E-11 93.9 7.0 79 178-256 126-237 (349)
160 3lnc_A Guanylate kinase, GMP k 98.3 3.7E-10 1.3E-14 111.9 -18.1 200 32-259 14-221 (231)
161 1ls1_A Signal recognition part 98.2 2.1E-06 7.2E-11 88.3 9.2 133 18-218 77-210 (295)
162 2qtf_A Protein HFLX, GTP-bindi 98.1 4.6E-07 1.6E-11 96.1 0.6 144 53-219 182-353 (364)
163 2f9l_A RAB11B, member RAS onco 98.0 8E-07 2.7E-11 85.2 1.1 37 180-218 130-166 (199)
164 3euj_A Chromosome partition pr 98.0 1.1E-06 3.7E-11 96.1 0.5 52 32-97 17-68 (483)
165 3hr8_A Protein RECA; alpha and 97.9 2.4E-06 8.2E-11 90.0 1.9 149 50-248 61-229 (356)
166 3tr0_A Guanylate kinase, GMP k 97.9 6.6E-07 2.2E-11 86.1 -2.6 65 48-124 5-73 (205)
167 4a1f_A DNAB helicase, replicat 97.8 3.9E-05 1.3E-09 80.2 7.7 54 172-230 110-164 (338)
168 2xau_A PRE-mRNA-splicing facto 97.7 5.3E-05 1.8E-09 87.9 9.1 79 170-250 189-270 (773)
169 2e87_A Hypothetical protein PH 97.7 2.5E-05 8.5E-10 82.4 5.4 59 172-233 232-293 (357)
170 1qhl_A Protein (cell division 97.7 5.6E-06 1.9E-10 81.8 -0.3 52 51-110 28-91 (227)
171 3t34_A Dynamin-related protein 97.6 0.00017 5.9E-09 75.9 10.4 58 172-230 155-212 (360)
172 4eun_A Thermoresistant glucoki 97.5 3.6E-06 1.2E-10 81.0 -4.1 60 49-120 28-90 (200)
173 2ce7_A Cell division protein F 97.5 0.00021 7.1E-09 78.2 9.0 59 174-232 93-164 (476)
174 1svm_A Large T antigen; AAA+ f 97.5 1.6E-07 5.6E-12 99.8 -15.8 138 33-200 157-312 (377)
175 2dhr_A FTSH; AAA+ protein, hex 97.4 1.7E-07 5.9E-12 103.1 -16.2 115 53-200 67-187 (499)
176 2z4s_A Chromosomal replication 97.3 0.00011 3.8E-09 79.7 3.4 70 188-258 193-264 (440)
177 3cr8_A Sulfate adenylyltranfer 97.2 8E-06 2.7E-10 91.0 -6.6 40 49-96 368-409 (552)
178 3uie_A Adenylyl-sulfate kinase 97.1 6.1E-06 2.1E-10 79.5 -7.6 61 22-98 4-66 (200)
179 3nwj_A ATSK2; P loop, shikimat 97.1 3.7E-05 1.3E-09 77.1 -2.2 53 17-80 17-73 (250)
180 4e22_A Cytidylate kinase; P-lo 97.1 4.5E-05 1.6E-09 76.3 -1.6 55 49-111 26-96 (252)
181 3bh0_A DNAB-like replicative h 97.1 0.00074 2.5E-08 69.8 7.5 55 172-231 134-190 (315)
182 1jjv_A Dephospho-COA kinase; P 97.1 7.1E-05 2.4E-09 72.0 -0.3 69 172-246 60-130 (206)
183 1ega_A Protein (GTP-binding pr 97.1 0.0006 2E-08 70.0 6.3 65 172-244 101-170 (301)
184 2dy1_A Elongation factor G; tr 97.0 0.00026 9E-09 80.7 3.0 125 49-232 8-136 (665)
185 1fnn_A CDC6P, cell division co 96.9 0.0017 6E-08 68.0 8.6 44 188-232 124-169 (389)
186 3b9p_A CG5977-PA, isoform A; A 96.9 0.0057 2E-07 61.9 11.7 74 173-246 97-186 (297)
187 2j41_A Guanylate kinase; GMP, 96.8 0.00034 1.2E-08 66.9 1.8 28 49-81 5-32 (207)
188 1zu4_A FTSY; GTPase, signal re 96.7 0.00019 6.6E-09 74.5 -0.8 69 48-124 103-185 (320)
189 3kta_A Chromosome segregation 96.6 0.00071 2.4E-08 63.4 2.1 27 50-81 26-52 (182)
190 1v5w_A DMC1, meiotic recombina 96.5 0.011 3.9E-07 61.6 11.3 55 178-232 204-274 (343)
191 3a00_A Guanylate kinase, GMP k 96.5 0.00047 1.6E-08 65.3 0.6 25 52-81 3-27 (186)
192 2q6t_A DNAB replication FORK h 96.5 0.016 5.4E-07 62.7 12.6 58 172-231 293-362 (444)
193 1kgd_A CASK, peripheral plasma 96.5 0.00059 2E-08 64.3 1.1 37 50-93 5-41 (180)
194 1knq_A Gluconate kinase; ALFA/ 96.5 0.00011 3.8E-09 68.6 -4.2 37 49-97 7-43 (175)
195 4ad8_A DNA repair protein RECN 96.3 0.00088 3E-08 74.1 1.1 155 35-225 51-246 (517)
196 3kl4_A SRP54, signal recogniti 96.2 0.0055 1.9E-07 66.0 6.9 50 181-231 171-223 (433)
197 2z43_A DNA repair and recombin 96.2 0.025 8.7E-07 58.3 11.5 55 177-231 188-257 (324)
198 2vp4_A Deoxynucleoside kinase; 96.1 0.0014 4.7E-08 64.3 1.1 36 49-96 19-54 (230)
199 2wjg_A FEOB, ferrous iron tran 96.0 0.0072 2.5E-07 56.2 5.6 69 188-259 111-182 (188)
200 2qby_A CDC6 homolog 1, cell di 96.0 0.0024 8.4E-08 66.6 2.5 43 190-232 129-173 (386)
201 1l8q_A Chromosomal replication 95.8 0.013 4.6E-07 60.1 7.4 44 188-232 97-141 (324)
202 1mky_A Probable GTP-binding pr 95.8 0.0071 2.4E-07 65.3 5.3 67 52-123 182-261 (439)
203 3tau_A Guanylate kinase, GMP k 95.8 0.0032 1.1E-07 60.6 2.3 28 49-81 7-34 (208)
204 3vaa_A Shikimate kinase, SK; s 95.8 0.0039 1.3E-07 59.4 2.7 38 32-79 12-49 (199)
205 3lxx_A GTPase IMAP family memb 95.7 0.055 1.9E-06 52.8 11.0 44 188-231 111-155 (239)
206 3cf0_A Transitional endoplasmi 95.6 0.01 3.5E-07 60.6 5.5 48 185-232 104-164 (301)
207 3tqc_A Pantothenate kinase; bi 95.6 0.001 3.6E-08 68.9 -2.2 33 172-204 179-211 (321)
208 1cke_A CK, MSSA, protein (cyti 95.4 0.00094 3.2E-08 64.8 -3.3 55 52-111 7-74 (227)
209 1u94_A RECA protein, recombina 95.4 0.13 4.4E-06 53.9 12.8 75 179-253 129-236 (356)
210 1ypw_A Transitional endoplasmi 95.3 0.017 5.8E-07 67.3 6.6 28 49-81 237-264 (806)
211 1rz3_A Hypothetical protein rb 95.3 0.0026 9E-08 60.9 -0.3 39 49-95 21-59 (201)
212 2pez_A Bifunctional 3'-phospho 95.2 0.0014 4.7E-08 61.4 -2.8 29 64-96 14-44 (179)
213 2qag_A Septin-2, protein NEDD5 95.2 0.0014 4.8E-08 69.0 -3.0 89 16-125 16-105 (361)
214 2qt1_A Nicotinamide riboside k 95.0 0.022 7.6E-07 54.3 5.3 26 49-79 20-45 (207)
215 3ice_A Transcription terminati 95.0 0.0074 2.5E-07 63.7 1.9 54 15-79 131-198 (422)
216 2gj8_A MNME, tRNA modification 95.0 0.029 9.9E-07 51.8 5.8 26 49-79 3-28 (172)
217 2r8r_A Sensor protein; KDPD, P 95.0 0.022 7.6E-07 55.7 5.1 47 183-230 78-125 (228)
218 2p67_A LAO/AO transport system 95.0 0.001 3.4E-08 69.6 -4.8 63 18-95 31-93 (341)
219 3bgw_A DNAB-like replicative h 94.9 0.054 1.9E-06 58.5 8.5 58 172-231 291-359 (444)
220 3m6a_A ATP-dependent protease 94.8 0.0023 7.7E-08 71.2 -2.8 52 30-95 94-145 (543)
221 1kag_A SKI, shikimate kinase I 94.8 0.013 4.3E-07 54.1 2.7 26 51-81 5-30 (173)
222 3ney_A 55 kDa erythrocyte memb 94.7 0.0088 3E-07 57.4 1.5 27 49-80 18-44 (197)
223 2w58_A DNAI, primosome compone 94.6 0.0054 1.8E-07 58.3 -0.3 50 188-238 114-165 (202)
224 3bos_A Putative DNA replicatio 94.5 0.026 8.9E-07 54.4 4.4 44 188-232 103-148 (242)
225 1w1w_A Structural maintenance 94.5 0.016 5.3E-07 62.4 3.0 28 49-81 25-52 (430)
226 3h4m_A Proteasome-activating n 94.5 0.07 2.4E-06 53.3 7.6 47 186-232 107-166 (285)
227 2www_A Methylmalonic aciduria 94.3 0.007 2.4E-07 63.4 -0.3 39 50-96 74-112 (349)
228 1m2o_B GTP-binding protein SAR 94.3 0.042 1.4E-06 51.5 5.1 50 34-94 13-67 (190)
229 3llm_A ATP-dependent RNA helic 94.1 0.0089 3E-07 58.6 -0.0 67 172-242 161-229 (235)
230 2i1q_A DNA repair and recombin 93.8 0.18 6.2E-06 51.6 9.4 70 179-248 191-290 (322)
231 1q57_A DNA primase/helicase; d 93.8 0.7 2.4E-05 50.4 14.5 69 178-247 341-440 (503)
232 2ffh_A Protein (FFH); SRP54, s 93.6 0.042 1.4E-06 59.0 4.1 40 50-97 98-137 (425)
233 1f6b_A SAR1; gtpases, N-termin 93.5 0.02 6.7E-07 54.3 1.2 35 33-78 14-48 (198)
234 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.037 1.3E-06 50.3 2.9 22 50-76 23-44 (149)
235 3d8b_A Fidgetin-like protein 1 93.2 0.37 1.3E-05 50.2 10.6 16 64-79 126-141 (357)
236 2zts_A Putative uncharacterize 92.9 0.07 2.4E-06 51.8 4.1 61 187-247 133-206 (251)
237 2qz4_A Paraplegin; AAA+, SPG7, 92.8 0.26 8.9E-06 48.2 8.3 16 64-79 48-63 (262)
238 2ohf_A Protein OLA1, GTP-bindi 92.7 0.088 3E-06 55.9 4.8 39 48-94 20-69 (396)
239 1xwi_A SKD1 protein; VPS4B, AA 92.6 1.2 4E-05 45.6 13.3 16 64-79 54-69 (322)
240 1xp8_A RECA protein, recombina 92.2 1.2 4E-05 46.7 12.8 72 178-250 139-244 (366)
241 2v1u_A Cell division control p 92.1 0.13 4.5E-06 53.3 5.3 44 189-232 130-177 (387)
242 2wji_A Ferrous iron transport 91.8 0.078 2.7E-06 48.2 2.8 24 52-80 5-28 (165)
243 3cmw_A Protein RECA, recombina 91.8 1.2 4.1E-05 55.5 13.9 73 178-250 797-902 (1706)
244 1np6_A Molybdopterin-guanine d 91.8 0.063 2.1E-06 50.3 2.1 32 64-95 15-46 (174)
245 1m7g_A Adenylylsulfate kinase; 91.7 0.037 1.3E-06 53.0 0.5 29 64-95 34-64 (211)
246 3io5_A Recombination and repai 91.2 0.91 3.1E-05 46.6 10.2 58 175-232 93-172 (333)
247 4eaq_A DTMP kinase, thymidylat 91.2 0.062 2.1E-06 52.5 1.5 40 35-81 13-52 (229)
248 3qks_A DNA double-strand break 91.1 0.1 3.5E-06 49.9 2.9 23 50-77 23-45 (203)
249 3euj_A Chromosome partition pr 91.1 0.31 1.1E-05 53.0 7.0 71 169-247 377-464 (483)
250 2zej_A Dardarin, leucine-rich 90.9 0.1 3.5E-06 48.4 2.7 23 52-79 4-26 (184)
251 2if2_A Dephospho-COA kinase; a 90.6 0.11 3.7E-06 49.2 2.5 20 53-77 4-23 (204)
252 2qor_A Guanylate kinase; phosp 90.5 0.15 5.1E-06 48.4 3.4 28 48-80 10-37 (204)
253 1g5t_A COB(I)alamin adenosyltr 90.1 0.19 6.6E-06 47.9 3.7 70 178-249 107-180 (196)
254 1lw7_A Transcriptional regulat 90.0 0.17 5.8E-06 52.9 3.6 28 172-199 297-329 (365)
255 1qhx_A CPT, protein (chloramph 89.8 0.18 6.2E-06 46.3 3.2 17 64-80 12-28 (178)
256 3cmw_A Protein RECA, recombina 89.5 1.9 6.6E-05 53.6 12.8 70 181-250 451-553 (1706)
257 3cmu_A Protein RECA, recombina 89.4 1.2 4.2E-05 56.2 11.0 73 179-251 449-554 (2050)
258 3t61_A Gluconokinase; PSI-biol 89.4 0.19 6.4E-06 47.5 3.1 16 64-79 27-42 (202)
259 3ihw_A Centg3; RAS, centaurin, 89.0 0.33 1.1E-05 45.0 4.4 23 52-79 22-44 (184)
260 2vhj_A Ntpase P4, P4; non- hyd 89.0 0.68 2.3E-05 47.6 7.1 40 192-231 185-235 (331)
261 3auy_A DNA double-strand break 88.8 0.27 9.1E-06 51.6 4.1 23 49-76 24-46 (371)
262 3k53_A Ferrous iron transport 88.5 0.23 7.7E-06 49.5 3.1 49 198-247 144-192 (271)
263 3q72_A GTP-binding protein RAD 88.5 0.22 7.6E-06 44.6 2.8 23 53-80 5-27 (166)
264 2yvu_A Probable adenylyl-sulfa 88.4 0.22 7.6E-06 46.3 2.8 18 64-81 22-39 (186)
265 2p5t_B PEZT; postsegregational 88.2 0.17 5.9E-06 49.9 2.0 28 64-96 41-68 (253)
266 1y63_A LMAJ004144AAA protein; 87.9 0.23 7.7E-06 46.4 2.5 24 50-78 10-33 (184)
267 3pqc_A Probable GTP-binding pr 87.8 0.34 1.1E-05 44.6 3.6 23 52-79 25-47 (195)
268 3kb2_A SPBC2 prophage-derived 87.7 0.26 8.8E-06 44.8 2.8 16 64-79 10-25 (173)
269 3hu3_A Transitional endoplasmi 87.7 0.42 1.4E-05 52.2 4.9 47 186-232 294-350 (489)
270 2ce2_X GTPase HRAS; signaling 87.6 0.25 8.5E-06 43.9 2.5 22 53-79 6-27 (166)
271 2erx_A GTP-binding protein DI- 87.6 0.27 9.3E-06 44.1 2.8 22 53-79 6-27 (172)
272 2nzj_A GTP-binding protein REM 87.5 0.28 9.5E-06 44.3 2.8 23 52-79 6-28 (175)
273 1svi_A GTP-binding protein YSX 87.4 0.37 1.3E-05 44.6 3.7 23 52-79 25-47 (195)
274 2lkc_A Translation initiation 87.4 0.33 1.1E-05 44.0 3.3 24 51-79 9-32 (178)
275 3cm0_A Adenylate kinase; ATP-b 87.2 0.27 9.2E-06 45.5 2.6 15 64-78 13-27 (186)
276 1z2a_A RAS-related protein RAB 87.2 0.26 8.8E-06 44.1 2.4 16 64-79 14-29 (168)
277 2xtp_A GTPase IMAP family memb 87.1 0.76 2.6E-05 45.0 6.0 23 52-79 24-46 (260)
278 3q85_A GTP-binding protein REM 87.1 0.3 1E-05 43.9 2.8 23 53-80 5-27 (169)
279 3lw7_A Adenylate kinase relate 87.0 0.34 1.2E-05 43.7 3.1 12 64-75 10-21 (179)
280 3tw8_B RAS-related protein RAB 87.0 0.3 1E-05 44.3 2.7 23 52-79 11-33 (181)
281 3iev_A GTP-binding protein ERA 86.9 0.27 9.2E-06 50.2 2.5 26 49-79 9-34 (308)
282 2ged_A SR-beta, signal recogni 86.9 0.31 1.1E-05 45.1 2.8 24 52-80 50-73 (193)
283 2cxx_A Probable GTP-binding pr 86.8 0.34 1.2E-05 44.4 3.1 22 53-79 4-25 (190)
284 3b1v_A Ferrous iron uptake tra 86.8 0.39 1.3E-05 48.1 3.7 23 52-79 5-27 (272)
285 1u8z_A RAS-related protein RAL 86.7 0.28 9.7E-06 43.7 2.4 23 52-79 6-28 (168)
286 2dyk_A GTP-binding protein; GT 86.6 0.29 9.8E-06 43.5 2.4 22 53-79 4-25 (161)
287 1uf9_A TT1252 protein; P-loop, 86.5 0.36 1.2E-05 45.2 3.1 15 64-78 17-31 (203)
288 2fn4_A P23, RAS-related protei 86.3 0.32 1.1E-05 44.1 2.5 23 52-79 11-33 (181)
289 1kao_A RAP2A; GTP-binding prot 86.3 0.3 1E-05 43.4 2.4 22 53-79 6-27 (167)
290 3iby_A Ferrous iron transport 86.3 0.36 1.2E-05 47.8 3.1 23 52-79 3-25 (256)
291 1q3t_A Cytidylate kinase; nucl 86.3 0.34 1.2E-05 47.1 2.8 26 49-79 15-40 (236)
292 1g16_A RAS-related protein SEC 86.3 0.32 1.1E-05 43.6 2.5 23 53-80 6-28 (170)
293 1fzq_A ADP-ribosylation factor 86.2 0.38 1.3E-05 44.3 3.0 23 52-79 18-40 (181)
294 2jaq_A Deoxyguanosine kinase; 86.2 0.35 1.2E-05 45.2 2.8 16 64-79 9-24 (205)
295 1z0j_A RAB-22, RAS-related pro 86.2 0.31 1.1E-05 43.7 2.4 23 52-79 8-30 (170)
296 1c1y_A RAS-related protein RAP 86.1 0.32 1.1E-05 43.5 2.4 22 53-79 6-27 (167)
297 1jal_A YCHF protein; nucleotid 86.1 0.45 1.5E-05 49.8 3.7 37 52-93 4-48 (363)
298 3t1o_A Gliding protein MGLA; G 85.9 0.35 1.2E-05 44.6 2.6 25 52-81 16-40 (198)
299 1z08_A RAS-related protein RAB 85.9 0.33 1.1E-05 43.5 2.4 23 52-79 8-30 (170)
300 1wf3_A GTP-binding protein; GT 85.9 0.33 1.1E-05 49.4 2.6 24 51-79 8-31 (301)
301 3lxw_A GTPase IMAP family memb 85.9 0.35 1.2E-05 47.5 2.7 55 176-231 89-148 (247)
302 1ek0_A Protein (GTP-binding pr 85.8 0.33 1.1E-05 43.4 2.4 22 53-79 6-27 (170)
303 2hxs_A RAB-26, RAS-related pro 85.8 0.4 1.4E-05 43.4 2.9 23 52-79 8-30 (178)
304 1wms_A RAB-9, RAB9, RAS-relate 85.7 0.34 1.1E-05 43.9 2.4 23 52-79 9-31 (177)
305 1gvn_B Zeta; postsegregational 85.7 0.46 1.6E-05 48.0 3.5 25 64-93 42-66 (287)
306 2rhm_A Putative kinase; P-loop 85.4 0.46 1.6E-05 44.0 3.2 15 64-78 14-28 (193)
307 1r2q_A RAS-related protein RAB 85.3 0.36 1.2E-05 43.1 2.4 23 52-79 8-30 (170)
308 2gf0_A GTP-binding protein DI- 85.3 0.42 1.4E-05 44.3 2.8 23 52-79 10-32 (199)
309 1moz_A ARL1, ADP-ribosylation 85.3 0.37 1.3E-05 44.0 2.4 21 52-77 20-40 (183)
310 2wwf_A Thymidilate kinase, put 85.2 0.53 1.8E-05 44.4 3.6 16 64-79 19-34 (212)
311 1ky3_A GTP-binding protein YPT 85.2 0.37 1.3E-05 43.7 2.4 23 52-79 10-32 (182)
312 1kht_A Adenylate kinase; phosp 85.2 0.45 1.5E-05 43.9 3.0 16 64-79 12-27 (192)
313 4dsu_A GTPase KRAS, isoform 2B 85.0 0.38 1.3E-05 44.0 2.4 22 53-79 7-28 (189)
314 3iij_A Coilin-interacting nucl 84.9 0.5 1.7E-05 43.5 3.2 15 64-78 20-34 (180)
315 2y8e_A RAB-protein 6, GH09086P 84.9 0.41 1.4E-05 43.3 2.5 23 52-79 16-38 (179)
316 2v54_A DTMP kinase, thymidylat 84.8 0.51 1.8E-05 44.2 3.2 16 64-79 13-28 (204)
317 3bc1_A RAS-related protein RAB 84.8 0.39 1.3E-05 44.0 2.4 23 52-79 13-35 (195)
318 3con_A GTPase NRAS; structural 84.7 0.4 1.4E-05 44.2 2.4 16 64-79 30-45 (190)
319 1z0f_A RAB14, member RAS oncog 84.7 0.4 1.4E-05 43.3 2.4 23 52-79 17-39 (179)
320 2oil_A CATX-8, RAS-related pro 84.7 0.39 1.3E-05 44.5 2.3 24 52-80 27-50 (193)
321 3clv_A RAB5 protein, putative; 84.7 0.46 1.6E-05 43.8 2.8 23 52-79 9-31 (208)
322 3llu_A RAS-related GTP-binding 84.7 0.57 2E-05 43.7 3.5 25 52-81 22-46 (196)
323 3i8s_A Ferrous iron transport 84.5 0.48 1.6E-05 47.4 3.0 23 52-79 5-27 (274)
324 3trf_A Shikimate kinase, SK; a 84.3 0.51 1.7E-05 43.6 2.9 16 64-79 14-29 (185)
325 2bme_A RAB4A, RAS-related prot 84.2 0.46 1.6E-05 43.5 2.5 24 52-80 12-35 (186)
326 1upt_A ARL1, ADP-ribosylation 84.2 0.48 1.6E-05 42.5 2.6 23 52-79 9-31 (171)
327 2g6b_A RAS-related protein RAB 84.2 0.44 1.5E-05 43.3 2.4 24 52-80 12-35 (180)
328 2a9k_A RAS-related protein RAL 84.2 0.44 1.5E-05 43.4 2.4 23 52-79 20-42 (187)
329 1zj6_A ADP-ribosylation factor 84.1 0.6 2E-05 43.0 3.3 23 52-79 18-40 (187)
330 1jwy_B Dynamin A GTPase domain 84.1 0.51 1.8E-05 47.7 3.1 24 52-80 26-49 (315)
331 1r8s_A ADP-ribosylation factor 84.1 0.45 1.5E-05 42.4 2.4 22 53-79 3-24 (164)
332 2efe_B Small GTP-binding prote 84.0 0.45 1.5E-05 43.2 2.4 24 52-80 14-37 (181)
333 3t5d_A Septin-7; GTP-binding p 84.0 0.49 1.7E-05 47.1 2.8 23 53-80 11-33 (274)
334 1via_A Shikimate kinase; struc 83.9 0.54 1.9E-05 43.1 2.9 22 53-79 7-28 (175)
335 1sxj_C Activator 1 40 kDa subu 83.8 0.14 4.7E-06 52.9 -1.4 41 189-232 110-150 (340)
336 3cbq_A GTP-binding protein REM 83.8 0.41 1.4E-05 44.8 2.1 22 52-78 25-46 (195)
337 3oes_A GTPase rhebl1; small GT 83.8 0.48 1.6E-05 44.3 2.5 24 52-80 26-49 (201)
338 2h17_A ADP-ribosylation factor 83.8 0.55 1.9E-05 43.0 2.9 23 52-79 23-45 (181)
339 1zbd_A Rabphilin-3A; G protein 83.7 0.54 1.8E-05 43.9 2.8 23 52-79 10-32 (203)
340 3dz8_A RAS-related protein RAB 83.7 0.5 1.7E-05 43.8 2.5 24 52-80 25-48 (191)
341 1nks_A Adenylate kinase; therm 83.7 0.58 2E-05 43.2 3.0 17 64-80 10-26 (194)
342 2aka_B Dynamin-1; fusion prote 83.6 0.56 1.9E-05 46.9 3.1 24 52-80 28-51 (299)
343 2fg5_A RAB-22B, RAS-related pr 83.6 0.5 1.7E-05 43.9 2.5 23 52-79 25-47 (192)
344 1aky_A Adenylate kinase; ATP:A 83.6 0.57 2E-05 44.8 3.0 16 64-79 13-28 (220)
345 2h57_A ADP-ribosylation factor 83.6 0.46 1.6E-05 43.9 2.3 23 52-79 23-45 (190)
346 3a1s_A Iron(II) transport prot 83.6 0.52 1.8E-05 46.7 2.8 16 64-79 14-29 (258)
347 2o52_A RAS-related protein RAB 83.5 0.58 2E-05 43.8 3.0 23 52-79 27-49 (200)
348 1m7b_A RND3/RHOE small GTP-bin 83.5 0.51 1.7E-05 43.4 2.5 23 52-79 9-31 (184)
349 1nn5_A Similar to deoxythymidy 83.5 0.64 2.2E-05 43.8 3.3 16 64-79 18-33 (215)
350 1j8m_F SRP54, signal recogniti 83.5 0.18 6.1E-06 51.4 -0.7 39 50-96 98-136 (297)
351 4bas_A ADP-ribosylation factor 83.4 0.5 1.7E-05 43.7 2.5 24 52-80 19-42 (199)
352 1lv7_A FTSH; alpha/beta domain 83.4 0.54 1.9E-05 46.1 2.8 24 52-80 47-70 (257)
353 1vg8_A RAS-related protein RAB 83.4 0.48 1.6E-05 44.2 2.4 23 52-79 10-32 (207)
354 2plr_A DTMP kinase, probable t 83.4 0.55 1.9E-05 44.1 2.8 18 64-81 13-30 (213)
355 2il1_A RAB12; G-protein, GDP, 83.4 0.53 1.8E-05 43.7 2.6 23 52-79 28-50 (192)
356 1ksh_A ARF-like protein 2; sma 83.3 0.58 2E-05 42.9 2.8 23 52-79 20-42 (186)
357 3tkl_A RAS-related protein RAB 83.3 0.49 1.7E-05 43.7 2.4 24 52-80 18-41 (196)
358 2c95_A Adenylate kinase 1; tra 83.2 0.68 2.3E-05 42.9 3.3 22 52-78 11-32 (196)
359 2gf9_A RAS-related protein RAB 83.2 0.5 1.7E-05 43.6 2.4 23 52-79 24-46 (189)
360 4ag6_A VIRB4 ATPase, type IV s 83.2 0.37 1.3E-05 50.7 1.6 44 189-233 262-308 (392)
361 4dhe_A Probable GTP-binding pr 83.2 0.37 1.3E-05 45.7 1.5 23 52-79 31-53 (223)
362 1nrj_B SR-beta, signal recogni 83.1 0.57 2E-05 44.3 2.8 24 52-80 14-37 (218)
363 2bov_A RAla, RAS-related prote 83.1 0.5 1.7E-05 44.0 2.4 23 52-79 16-38 (206)
364 3kkq_A RAS-related protein M-R 83.1 0.51 1.8E-05 43.1 2.4 23 52-79 20-42 (183)
365 3t5g_A GTP-binding protein RHE 82.9 0.56 1.9E-05 42.7 2.5 23 52-79 8-30 (181)
366 1ly1_A Polynucleotide kinase; 82.9 0.6 2.1E-05 42.6 2.8 14 64-77 11-24 (181)
367 2cjw_A GTP-binding protein GEM 82.8 0.53 1.8E-05 44.0 2.4 22 52-78 8-29 (192)
368 1xjc_A MOBB protein homolog; s 82.5 0.45 1.5E-05 44.2 1.7 18 64-81 13-30 (169)
369 2bcg_Y Protein YP2, GTP-bindin 82.5 0.58 2E-05 43.8 2.5 24 52-80 10-33 (206)
370 1z06_A RAS-related protein RAB 82.4 0.56 1.9E-05 43.3 2.4 23 52-79 22-44 (189)
371 2fh5_B SR-beta, signal recogni 82.3 0.58 2E-05 44.1 2.5 24 52-80 9-32 (214)
372 1vht_A Dephospho-COA kinase; s 82.3 0.68 2.3E-05 44.1 3.0 14 64-77 13-26 (218)
373 1zd9_A ADP-ribosylation factor 82.3 0.57 2E-05 43.3 2.4 23 52-79 24-46 (188)
374 2f7s_A C25KG, RAS-related prot 82.1 0.65 2.2E-05 43.9 2.7 24 52-80 27-50 (217)
375 2a5j_A RAS-related protein RAB 82.1 0.57 1.9E-05 43.4 2.3 23 52-79 23-45 (191)
376 2qu8_A Putative nucleolar GTP- 82.0 0.65 2.2E-05 44.5 2.7 23 52-79 31-53 (228)
377 1mh1_A RAC1; GTP-binding, GTPa 82.0 0.6 2E-05 42.5 2.4 23 52-79 7-29 (186)
378 1gtv_A TMK, thymidylate kinase 81.9 0.39 1.3E-05 45.4 1.1 18 64-81 9-26 (214)
379 1x3s_A RAS-related protein RAB 81.8 0.61 2.1E-05 42.9 2.4 23 52-79 17-39 (195)
380 3bwd_D RAC-like GTP-binding pr 81.8 0.61 2.1E-05 42.3 2.4 23 52-79 10-32 (182)
381 2fv8_A H6, RHO-related GTP-bin 81.8 0.64 2.2E-05 43.7 2.5 24 52-80 27-50 (207)
382 2atv_A RERG, RAS-like estrogen 81.7 0.61 2.1E-05 43.3 2.4 23 52-79 30-52 (196)
383 2j1l_A RHO-related GTP-binding 81.7 0.75 2.5E-05 43.6 3.0 23 52-79 36-58 (214)
384 3reg_A RHO-like small GTPase; 81.6 0.62 2.1E-05 43.1 2.4 24 52-80 25-48 (194)
385 2z0h_A DTMP kinase, thymidylat 81.5 0.72 2.5E-05 42.8 2.8 16 64-79 9-24 (197)
386 2ew1_A RAS-related protein RAB 81.5 0.66 2.3E-05 43.7 2.5 23 52-79 28-50 (201)
387 2q3h_A RAS homolog gene family 81.4 0.74 2.5E-05 42.8 2.8 23 52-79 22-44 (201)
388 2p5s_A RAS and EF-hand domain 81.4 0.62 2.1E-05 43.4 2.3 23 52-79 30-52 (199)
389 1gwn_A RHO-related GTP-binding 81.4 0.67 2.3E-05 43.8 2.5 24 52-80 30-53 (205)
390 3r20_A Cytidylate kinase; stru 81.3 0.71 2.4E-05 45.2 2.7 29 203-232 110-138 (233)
391 1zak_A Adenylate kinase; ATP:A 81.1 0.93 3.2E-05 43.3 3.5 22 52-78 7-28 (222)
392 2b6h_A ADP-ribosylation factor 81.1 0.85 2.9E-05 42.4 3.1 23 52-79 31-53 (192)
393 3cph_A RAS-related protein SEC 81.1 0.66 2.3E-05 43.5 2.4 23 52-79 22-44 (213)
394 2iwr_A Centaurin gamma 1; ANK 81.0 0.54 1.8E-05 42.7 1.6 23 52-79 9-31 (178)
395 2dby_A GTP-binding protein; GD 80.8 0.67 2.3E-05 48.6 2.5 22 53-79 4-25 (368)
396 3def_A T7I23.11 protein; chlor 80.8 0.81 2.8E-05 45.2 3.0 24 52-80 38-61 (262)
397 3c5c_A RAS-like protein 12; GD 80.7 0.7 2.4E-05 42.7 2.4 23 52-79 23-45 (187)
398 2gco_A H9, RHO-related GTP-bin 80.7 0.74 2.5E-05 43.1 2.5 24 52-80 27-50 (201)
399 1zd8_A GTP:AMP phosphotransfer 80.6 0.88 3E-05 43.7 3.1 23 52-79 9-31 (227)
400 1ex7_A Guanylate kinase; subst 80.6 0.81 2.8E-05 43.1 2.8 16 64-79 10-25 (186)
401 2g3y_A GTP-binding protein GEM 80.4 0.83 2.8E-05 43.7 2.8 23 52-79 39-61 (211)
402 2wsm_A Hydrogenase expression/ 80.2 0.78 2.7E-05 43.5 2.6 23 52-79 32-54 (221)
403 1tev_A UMP-CMP kinase; ploop, 80.2 0.83 2.8E-05 42.1 2.7 15 64-78 12-26 (196)
404 3be4_A Adenylate kinase; malar 80.2 0.93 3.2E-05 43.3 3.1 16 64-79 14-29 (217)
405 1h65_A Chloroplast outer envel 80.1 0.88 3E-05 45.1 3.0 23 52-79 41-63 (270)
406 1ko7_A HPR kinase/phosphatase; 80.0 1.5 5.2E-05 44.8 4.7 36 32-78 132-167 (314)
407 2cdn_A Adenylate kinase; phosp 79.9 1.1 3.6E-05 42.1 3.4 15 64-78 29-43 (201)
408 2fu5_C RAS-related protein RAB 79.8 0.56 1.9E-05 42.8 1.3 23 52-79 10-32 (183)
409 1jbk_A CLPB protein; beta barr 79.8 1.1 3.6E-05 40.8 3.3 44 189-232 115-161 (195)
410 3fb4_A Adenylate kinase; psych 79.7 0.87 3E-05 43.2 2.7 15 64-78 9-23 (216)
411 2pbr_A DTMP kinase, thymidylat 79.7 0.92 3.1E-05 41.8 2.8 16 64-79 9-24 (195)
412 4a9a_A Ribosome-interacting GT 79.2 0.69 2.4E-05 48.6 1.9 40 52-96 74-121 (376)
413 3cnl_A YLQF, putative uncharac 79.1 1.1 3.8E-05 44.5 3.4 25 52-81 101-125 (262)
414 2atx_A Small GTP binding prote 79.0 0.9 3.1E-05 41.9 2.5 23 52-79 20-42 (194)
415 2bwj_A Adenylate kinase 5; pho 79.0 1.1 3.7E-05 41.6 3.1 15 64-78 21-35 (199)
416 2hup_A RAS-related protein RAB 79.0 0.9 3.1E-05 42.5 2.5 23 52-79 31-53 (201)
417 4djt_A GTP-binding nuclear pro 78.8 0.49 1.7E-05 44.7 0.6 23 52-79 13-35 (218)
418 3dl0_A Adenylate kinase; phosp 78.7 0.97 3.3E-05 42.9 2.7 15 64-78 9-23 (216)
419 2b8t_A Thymidine kinase; deoxy 78.7 3.5 0.00012 39.9 6.7 53 189-247 89-150 (223)
420 1e6c_A Shikimate kinase; phosp 78.6 1 3.4E-05 40.9 2.7 16 64-79 11-26 (173)
421 2vli_A Antibiotic resistance p 78.5 0.8 2.7E-05 42.0 2.0 16 64-79 14-29 (183)
422 2x77_A ADP-ribosylation factor 78.5 0.92 3.1E-05 41.7 2.4 22 52-78 24-45 (189)
423 2ze6_A Isopentenyl transferase 78.4 0.9 3.1E-05 44.8 2.4 16 64-79 10-25 (253)
424 1qf9_A UMP/CMP kinase, protein 78.3 1.3 4.3E-05 40.8 3.3 15 64-78 15-29 (194)
425 2ga8_A Hypothetical 39.9 kDa p 78.2 1 3.6E-05 46.8 2.9 23 53-80 27-49 (359)
426 2pt5_A Shikimate kinase, SK; a 78.2 1.1 3.7E-05 40.5 2.7 15 64-78 9-23 (168)
427 2ocp_A DGK, deoxyguanosine kin 77.8 1.2 4.1E-05 43.2 3.1 17 64-80 11-27 (241)
428 3cmu_A Protein RECA, recombina 77.7 6.1 0.00021 50.0 9.9 49 183-231 802-868 (2050)
429 1ukz_A Uridylate kinase; trans 77.5 1.3 4.3E-05 41.5 3.1 15 64-78 24-38 (203)
430 4gzl_A RAS-related C3 botulinu 77.3 1.1 3.7E-05 42.1 2.5 23 52-79 32-54 (204)
431 2eyu_A Twitching motility prot 77.2 0.0058 2E-07 61.3 -14.2 56 172-231 173-239 (261)
432 3q3j_B RHO-related GTP-binding 77.2 1 3.5E-05 42.7 2.4 23 52-79 29-51 (214)
433 1e4v_A Adenylate kinase; trans 77.1 1.2 4.2E-05 42.2 2.9 15 64-78 9-23 (214)
434 2j0v_A RAC-like GTP-binding pr 77.1 1.1 3.8E-05 42.1 2.5 23 52-79 11-33 (212)
435 3cpj_B GTP-binding protein YPT 77.0 1 3.5E-05 42.9 2.3 24 52-80 15-38 (223)
436 2iyv_A Shikimate kinase, SK; t 77.0 1.3 4.6E-05 40.6 3.0 16 64-79 11-26 (184)
437 2hf9_A Probable hydrogenase ni 76.7 1.1 3.9E-05 42.5 2.5 23 52-79 40-62 (226)
438 2yc2_C IFT27, small RAB-relate 76.5 0.59 2E-05 43.5 0.4 22 52-78 22-43 (208)
439 3tlx_A Adenylate kinase 2; str 76.4 1.3 4.6E-05 43.1 3.0 15 64-78 38-52 (243)
440 1jcn_A Inosine monophosphate d 76.2 0.074 2.5E-06 58.5 -6.9 74 184-264 28-104 (514)
441 1wxq_A GTP-binding protein; st 75.8 1.3 4.6E-05 46.8 3.0 77 143-239 181-260 (397)
442 4fcw_A Chaperone protein CLPB; 75.7 1.3 4.3E-05 44.5 2.7 34 183-217 112-146 (311)
443 3ake_A Cytidylate kinase; CMP 75.6 1.2 4.2E-05 41.6 2.4 16 64-79 11-26 (208)
444 2p65_A Hypothetical protein PF 75.5 1.3 4.3E-05 40.2 2.4 44 189-232 115-162 (187)
445 2xb4_A Adenylate kinase; ATP-b 75.5 1.4 4.8E-05 42.3 2.8 15 64-78 9-23 (223)
446 3ld9_A DTMP kinase, thymidylat 75.4 1.7 5.8E-05 42.2 3.4 27 50-80 20-46 (223)
447 1puj_A YLQF, conserved hypothe 75.3 1.6 5.5E-05 43.8 3.3 24 52-80 122-145 (282)
448 3a4m_A L-seryl-tRNA(SEC) kinas 75.2 1.4 4.8E-05 43.4 2.8 16 64-79 13-28 (260)
449 1zuh_A Shikimate kinase; alpha 75.0 1.5 5E-05 39.7 2.7 15 64-78 16-30 (168)
450 3zvl_A Bifunctional polynucleo 74.9 1.8 6E-05 46.1 3.7 15 64-78 267-281 (416)
451 4dcu_A GTP-binding protein ENG 74.8 1.2 4E-05 48.0 2.2 52 175-231 88-140 (456)
452 2f6r_A COA synthase, bifunctio 74.6 1.8 6E-05 43.4 3.4 13 64-76 84-96 (281)
453 3lv8_A DTMP kinase, thymidylat 74.4 1.8 6.2E-05 42.3 3.3 18 64-81 36-53 (236)
454 1ak2_A Adenylate kinase isoenz 74.4 1.7 5.8E-05 41.9 3.1 16 64-79 25-40 (233)
455 2x2e_A Dynamin-1; nitration, h 74.0 1.1 3.9E-05 46.3 1.8 24 52-80 33-56 (353)
456 4edh_A DTMP kinase, thymidylat 73.9 1.9 6.4E-05 41.4 3.2 18 64-81 15-32 (213)
457 1of1_A Thymidine kinase; trans 73.3 2.1 7.1E-05 44.9 3.6 27 51-81 49-75 (376)
458 3r7w_A Gtpase1, GTP-binding pr 72.9 2 6.9E-05 43.5 3.4 23 52-79 5-27 (307)
459 1a7j_A Phosphoribulokinase; tr 72.5 1.4 4.7E-05 44.5 2.0 15 64-78 14-28 (290)
460 4hlc_A DTMP kinase, thymidylat 72.5 2.1 7.1E-05 40.8 3.2 18 64-81 11-28 (205)
461 1njg_A DNA polymerase III subu 72.5 2.1 7.3E-05 40.2 3.3 41 189-232 126-166 (250)
462 3geh_A MNME, tRNA modification 72.1 1.6 5.5E-05 47.1 2.5 22 52-78 226-247 (462)
463 1p5z_B DCK, deoxycytidine kina 72.0 1.2 4.1E-05 43.8 1.4 17 64-80 33-49 (263)
464 2qpt_A EH domain-containing pr 71.8 2.3 7.8E-05 47.0 3.7 23 52-79 67-89 (550)
465 3gj0_A GTP-binding nuclear pro 71.8 1.4 4.7E-05 41.8 1.7 22 52-78 17-39 (221)
466 3hjn_A DTMP kinase, thymidylat 71.8 1.5 5.1E-05 41.5 1.9 18 64-81 9-26 (197)
467 1p6x_A Thymidine kinase; P-loo 71.6 1.8 6.1E-05 44.7 2.6 18 64-81 16-33 (334)
468 3umf_A Adenylate kinase; rossm 71.5 2.1 7.3E-05 41.2 3.0 15 64-78 38-52 (217)
469 2grj_A Dephospho-COA kinase; T 71.4 2 6.9E-05 40.5 2.8 15 64-78 21-35 (192)
470 3syl_A Protein CBBX; photosynt 71.3 2.4 8.2E-05 42.4 3.5 41 189-231 130-178 (309)
471 3l0i_B RAS-related protein RAB 71.1 0.57 2E-05 43.7 -1.2 24 52-80 35-58 (199)
472 1osn_A Thymidine kinase, VZV-T 71.0 1.7 5.9E-05 44.9 2.3 17 65-81 22-39 (341)
473 3v9p_A DTMP kinase, thymidylat 71.0 1.9 6.5E-05 41.9 2.5 17 64-80 34-50 (227)
474 1yrb_A ATP(GTP)binding protein 70.9 2.7 9.2E-05 40.9 3.7 15 65-79 24-38 (262)
475 3th5_A RAS-related C3 botulinu 73.5 0.87 3E-05 42.6 0.0 22 52-78 32-53 (204)
476 2chg_A Replication factor C sm 70.4 2.6 9E-05 39.0 3.4 41 189-232 102-142 (226)
477 2hjg_A GTP-binding protein ENG 70.1 1.8 6E-05 46.3 2.3 23 52-79 5-27 (436)
478 3ec1_A YQEH GTPase; atnos1, at 69.5 2.2 7.5E-05 44.6 2.8 23 51-78 163-185 (369)
479 3tmk_A Thymidylate kinase; pho 69.0 3 0.0001 40.1 3.4 18 64-81 14-31 (216)
480 3p32_A Probable GTPase RV1496/ 68.9 2.3 8E-05 44.0 2.8 17 64-80 88-104 (355)
481 3h2y_A GTPase family protein; 68.9 2.5 8.4E-05 44.2 3.0 25 50-79 160-184 (368)
482 1sky_E F1-ATPase, F1-ATP synth 68.2 2.3 8E-05 45.9 2.7 27 49-80 150-176 (473)
483 1f5n_A Interferon-induced guan 68.0 2.5 8.5E-05 47.1 3.0 23 52-79 40-62 (592)
484 1lnz_A SPO0B-associated GTP-bi 68.0 2.8 9.7E-05 43.3 3.2 22 52-78 160-181 (342)
485 2j69_A Bacterial dynamin-like 68.0 2.4 8.3E-05 48.2 3.0 23 52-79 71-93 (695)
486 1ltq_A Polynucleotide kinase; 68.0 2.5 8.5E-05 42.2 2.8 14 64-77 11-24 (301)
487 3n70_A Transport activator; si 67.7 3.3 0.00011 36.7 3.2 40 190-232 77-116 (145)
488 1uj2_A Uridine-cytidine kinase 67.7 2.6 9E-05 41.1 2.8 16 64-79 31-46 (252)
489 3sjy_A Translation initiation 67.2 3.2 0.00011 43.8 3.5 24 52-80 10-33 (403)
490 3gee_A MNME, tRNA modification 67.1 1.9 6.4E-05 46.8 1.7 22 53-79 236-257 (476)
491 4tmk_A Protein (thymidylate ki 66.7 3.4 0.00012 39.6 3.3 18 64-81 12-29 (213)
492 2qmh_A HPR kinase/phosphorylas 66.6 4.9 0.00017 38.3 4.3 16 64-79 43-58 (205)
493 2ewv_A Twitching motility prot 66.5 0.014 4.7E-07 61.7 -15.0 59 172-233 284-352 (372)
494 2r62_A Cell division protease 66.4 1.9 6.4E-05 42.3 1.4 16 64-79 53-68 (268)
495 2hjg_A GTP-binding protein ENG 66.3 2.7 9.4E-05 44.7 2.8 24 52-80 177-200 (436)
496 1sxj_D Activator 1 41 kDa subu 66.1 3.1 0.00011 42.2 3.1 42 189-233 133-174 (353)
497 2orv_A Thymidine kinase; TP4A 66.1 8 0.00027 37.6 5.8 53 188-247 89-150 (234)
498 3dpu_A RAB family protein; roc 65.9 2.7 9.4E-05 46.0 2.8 16 64-79 50-65 (535)
499 1e2k_A Thymidine kinase; trans 65.7 3.1 0.00011 42.8 2.9 18 64-81 13-30 (331)
500 1mky_A Probable GTP-binding pr 65.6 2.9 9.9E-05 44.6 2.8 23 52-79 3-25 (439)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.4e-48 Score=412.89 Aligned_cols=221 Identities=20% Similarity=0.301 Sum_probs=199.1
Q ss_pred CCcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
.+++++||+++|..+ +.++|+++||++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i-----~~Gei~~IiGpn-----GaGKSTLlr~i~GL~~p---~~G~I~i~G 89 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHV-----PAGQIYGVIGAS-----GAGKSTLIRCVNLLERP---TEGSVLVDG 89 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEETT
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEE-----cCCCEEEEEcCC-----CchHHHHHHHHhcCCCC---CceEEEECC
Confidence 368899999998543 367999999999 678888888776 89999999999999999 599999999
Q ss_pred EecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 94 KPVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 94 ~~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
+++.. ..|+.+|||||++.+++.+||+||+.++..... .++.+.+++++++++.+||.+.+++++++
T Consensus 90 ~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~~~--- 163 (366)
T 3tui_C 90 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYPSN--- 163 (366)
T ss_dssp EECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCTTT---
T ss_pred EECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCChhh---
Confidence 99864 246889999999999999999999999877653 34566778899999999999999998766
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++.|+|||++|||+ +++.++||||++|
T Consensus 164 -----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl 237 (366)
T 3tui_C 164 -----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVI 237 (366)
T ss_dssp -----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999876799999999996 6888999999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|++++++
T Consensus 238 ~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 238 SNGELIEQDTVSEVF 252 (366)
T ss_dssp ETTEEEECCBHHHHH
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999999875
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.2e-48 Score=413.14 Aligned_cols=218 Identities=21% Similarity=0.254 Sum_probs=196.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|+| |+.++|+++||++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~i~~ls~~y--~~~~~L~~vsl~i-----~~Ge~~~llGps-----GsGKSTLLr~iaGl~~p---~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSF--QNTPVLNDISLSL-----DPGEILFIIGAS-----GCGKTTLLRCLAGFEQP---DSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEEEST-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred EEEEEeEEEEE--CCEEEEEeeEEEE-----cCCCEEEEECCC-----CchHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence 57899999996 7889999999999 677888888886 89999999999999999 599999999998
Q ss_pred ----Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 97 ----EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ----~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
.. ..++.+|||||++.++|.+||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++.+
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~~~------- 138 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYPHE------- 138 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCGGG-------
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCChhh-------
Confidence 22 346789999999999999999999999865432 23455667899999999999999999777
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++.|+|+|+||||+ +++..+||||++|++|+
T Consensus 139 -LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~ 216 (359)
T 3fvq_A 139 -LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGR 216 (359)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999998776799999999995 78999999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++..|+++++.
T Consensus 217 i~~~g~~~el~ 227 (359)
T 3fvq_A 217 ILQTASPHELY 227 (359)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEeCHHHHH
Confidence 99999999875
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.7e-48 Score=413.23 Aligned_cols=218 Identities=23% Similarity=0.307 Sum_probs=199.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+| |+.++|+++||++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~y--g~~~~L~~vsl~i-----~~Ge~~~llGps-----GsGKSTLLr~iaGl~~p---~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAW--GEVVVSKDINLDI-----HEGEFVVFVGPS-----GCGKSTLLRMIAGLETI---TSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred EEEEEeEEEEE--CCEEEEeeeEEEE-----CCCCEEEEEcCC-----CchHHHHHHHHHcCCCC---CCeEEEECCEEC
Confidence 47899999996 7889999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|.+||+||+.|+.+.+. .++++.+++++++++.+||.+..++++.+ |||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p~~--------LSG 136 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPKA--------LSG 136 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCGGG--------SCH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCChhH--------CCH
Confidence 65 346789999999999999999999999987653 35566778899999999999999999776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++.|+|+|++|||+ +++..+||||++|++|+++..
T Consensus 137 GqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999876699999999995 789999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 216 g~~~~l~ 222 (381)
T 3rlf_A 216 GKPLELY 222 (381)
T ss_dssp ECHHHHH
T ss_pred eCHHHHH
Confidence 9999875
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.2e-47 Score=385.76 Aligned_cols=221 Identities=21% Similarity=0.294 Sum_probs=189.5
Q ss_pred CcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||+++|..++ .++|+++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i-----~~Ge~~~iiG~n-----GsGKSTLl~~l~Gl~~p---~~G~I~~~g~ 67 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNI-----KEGEFVSIMGPS-----GSGKSTMLNIIGCLDKP---TEGEVYIDNI 67 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETTE
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CceEEEECCE
Confidence 367899999985433 57999999999 678888888877 89999999999999999 5999999999
Q ss_pred ecCc----c----ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcC
Q psy2519 95 PVEG----K----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSS 165 (622)
Q Consensus 95 ~~~~----~----~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~ 165 (622)
++.. . .++.+|||||++.+++.+||+||+.++.........+..+..+++.++++.++|.+. .++++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 145 (235)
T 3tif_A 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ-- 145 (235)
T ss_dssp ECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGG--
T ss_pred EcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhh--
Confidence 9854 1 235699999999999999999999998765421223445567788999999999875 4888666
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++|||+ + +.++|||+++
T Consensus 146 ------LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~ 217 (235)
T 3tif_A 146 ------LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIY 217 (235)
T ss_dssp ------SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEE
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999875599999999996 4 4589999999
Q ss_pred ecCCceEEecChHHH
Q psy2519 246 LADSRTAFIGSKDAA 260 (622)
Q Consensus 246 L~~G~iv~~G~~~~~ 260 (622)
|++|+++..++++++
T Consensus 218 l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 218 LKDGEVEREEKLRGF 232 (235)
T ss_dssp EETTEEEEEEECC--
T ss_pred EECCEEEEEcChhhh
Confidence 999999999988764
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.7e-47 Score=392.59 Aligned_cols=219 Identities=22% Similarity=0.336 Sum_probs=192.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. ++.++|+++|+++ .+|+.++++|+| |||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 7 ~l~i~~ls~~y~-~~~~~L~~isl~i-----~~Ge~~~iiGpn-----GsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS-DGTHALKGINMNI-----KRGEVTAILGGN-----GVGKSTLFQNFNGILKP---SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT-TSCEEEEEEEEEE-----ETTSEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-CCCeEEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcCCCC---CCeEEEECCEEC
Confidence 578999999973 3456999999999 677788888887 89999999999999999 599999999998
Q ss_pred C--c----cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 E--G----KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~--~----~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
. . .+++.+|||||++ ..+..+||+||+.|+..... .+.++.+++++++++.+||.+..++++.+
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~------ 143 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK---LPEDEIRKRVDNALKRTGIEHLKDKPTHC------ 143 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHTTCGGGTTSBGGG------
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCccc------
Confidence 4 2 3578899999986 34457899999999876542 34556677899999999999999998777
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.+++++|+++++++|+|||++|||+ +++.++|||+++|++|
T Consensus 144 --LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G 220 (275)
T 3gfo_A 144 --LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEG 220 (275)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999833599999999997 5788899999999999
Q ss_pred ceEEecChHHHH
Q psy2519 250 RTAFIGSKDAAL 261 (622)
Q Consensus 250 ~iv~~G~~~~~~ 261 (622)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (275)
T 3gfo_A 221 RVILQGNPKEVF 232 (275)
T ss_dssp EEEEEECHHHHT
T ss_pred EEEEECCHHHHh
Confidence 999999999875
No 6
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.2e-47 Score=402.55 Aligned_cols=219 Identities=21% Similarity=0.299 Sum_probs=196.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. |+.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 14 ~l~~~~l~~~y~-g~~~vl~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP-GGARSVRGVSFQI-----REGEMVGLLGPS-----GSGKTTILRLIAGLERP---TKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT-TSTTCEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred eEEEEEEEEEEc-CCCEEEeeeEEEE-----CCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CccEEEECCEEC
Confidence 578999999863 6677999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||+..++|.+||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++.+ |||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~~~--------LSG 148 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFPHE--------LSG 148 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCGGG--------SCH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCccc--------CCH
Confidence 64 356789999999999999999999999876542 24455667899999999999999999776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|+|++|||+ +++..+|||+++|++|+++..
T Consensus 149 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875699999999995 688899999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 228 g~~~~l~ 234 (355)
T 1z47_A 228 GTPEEVY 234 (355)
T ss_dssp ECHHHHH
T ss_pred cCHHHHH
Confidence 9999875
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.8e-47 Score=386.99 Aligned_cols=217 Identities=22% Similarity=0.313 Sum_probs=192.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ ++|+.+.++|+| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 24 ~l~i~~l~~~y--~~~~vL~~vsl~i-----~~Gei~~liG~N-----GsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSF--GSLEVLKGINVHI-----REGEVVVVIGPS-----GSGKSTFLRCLNLLEDF---DEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTEES
T ss_pred eEEEEeEEEEE--CCEEEEEeeEEEE-----cCCCEEEEEcCC-----CCcHHHHHHHHHcCCCC---CCcEEEECCEEC
Confidence 58999999997 7778999999999 677888888887 89999999999999999 599999999998
Q ss_pred C--c----cccccEEEEecCCCCCCCCCHHHHHHHHH-HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 E--G----KFRSACGFMYQHDLFSPSLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~--~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
. . .+++.+|||+|++.+++.+||+||+.++. .... .+..+.+++++++++.+||.+..++++.+
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~------ 159 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK---WPREKAEAKAMELLDKVGLKDKAHAYPDS------ 159 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHTTCGGGTTSCGGG------
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCChhh------
Confidence 4 1 24678999999999999999999999964 3322 23344566789999999999988988777
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +++.++||++++|++|
T Consensus 160 --LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~~G 235 (263)
T 2olj_A 160 --LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVVVTHEM-GFAREVGDRVLFMDGG 235 (263)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999987 499999999996 6888899999999999
Q ss_pred ceEEecChHHHH
Q psy2519 250 RTAFIGSKDAAL 261 (622)
Q Consensus 250 ~iv~~G~~~~~~ 261 (622)
++++.|+++++.
T Consensus 236 ~i~~~g~~~~~~ 247 (263)
T 2olj_A 236 YIIEEGKPEDLF 247 (263)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEECCHHHHH
Confidence 999999998765
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4e-47 Score=387.88 Aligned_cols=217 Identities=22% Similarity=0.268 Sum_probs=192.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~i~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~liG~n-----GsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRY--GGHEVLKGVSLQA-----RAGDVISIIGSS-----GSGKSTFLRCINFLEKP---SEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred eEEEeeEEEEE--CCEEEEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEEc
Confidence 58899999997 7778999999999 677788888887 89999999999999999 599999999987
Q ss_pred Cc-----------------cccccEEEEecCCCCCCCCCHHHHHHHHH-HcCCCccccHHHHHHHHHHHHHHhCCCcc-c
Q psy2519 97 EG-----------------KFRSACGFMYQHDLFSPSLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNS-Q 157 (622)
Q Consensus 97 ~~-----------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~ 157 (622)
.. ..++.+|||||++.+++.+||+||+.++. .... .+..+.+++++++++.+||.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG---LSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcC---CCHHHHHHHHHHHHHHcCCCchhh
Confidence 51 24678999999999999999999999964 3321 2334456778999999999988 8
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++++++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +++.
T Consensus 148 ~~~~~~--------LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~-~~~~ 217 (262)
T 1b0u_A 148 GKYPVH--------LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-GFAR 217 (262)
T ss_dssp TSCGGG--------SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCH-HHHH
T ss_pred cCCccc--------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHH
Confidence 988777 999999999999999999999999999999999999999999999987 599999999996 6888
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++|||+++|++|++++.|+++++.
T Consensus 218 ~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 218 HVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCEEEEEECCEEEEeCCHHHHH
Confidence 899999999999999999998764
No 9
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.4e-47 Score=402.80 Aligned_cols=218 Identities=20% Similarity=0.276 Sum_probs=196.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 67 (362)
T 2it1_A 3 EIKLENIVKKF--GNFTALNNINLKI-----KDGEFMALLGPS-----GSGKSTLLYTIAGIYKP---TSGKIYFDEKDV 67 (362)
T ss_dssp CEEEEEEEEES--SSSEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred EEEEEeEEEEE--CCEEEEEeeEEEE-----CCCCEEEEECCC-----CchHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 47899999997 7778999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||+..++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++.+ |||
T Consensus 68 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~~--------LSG 136 (362)
T 2it1_A 68 TELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYPWQ--------LSG 136 (362)
T ss_dssp TTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCGGG--------SCH
T ss_pred CcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCChhh--------CCH
Confidence 64 346789999999999999999999999876542 23455667899999999999999998776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ +++..+|||+++|++|+++..
T Consensus 137 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~ 215 (362)
T 2it1_A 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQV 215 (362)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875699999999995 688899999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 216 g~~~~~~ 222 (362)
T 2it1_A 216 GTPDEVY 222 (362)
T ss_dssp ECHHHHH
T ss_pred cCHHHHH
Confidence 9999875
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-47 Score=403.13 Aligned_cols=218 Identities=19% Similarity=0.258 Sum_probs=195.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 67 (359)
T 2yyz_A 3 SIRVVNLKKYF--GKVKAVDGVSFEV-----KDGEFVALLGPS-----GCGKTTTLLMLAGIYKP---TSGEIYFDDVLV 67 (359)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred EEEEEEEEEEE--CCEEEEeeeEEEE-----cCCCEEEEEcCC-----CchHHHHHHHHHCCCCC---CccEEEECCEEC
Confidence 47899999997 7788999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++++ |||
T Consensus 68 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~~--------LSg 136 (359)
T 2yyz_A 68 NDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARR---ISKDEVEKRVVEIARKLLIDNLLDRKPTQ--------LSG 136 (359)
T ss_dssp TTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSC---SHHHHTTHHHHHHHHHTTCGGGTTSCGGG--------SCH
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCChhh--------CCH
Confidence 64 346789999999999999999999999765432 23444567899999999999999999776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ +++..+|||+++|++|+++..
T Consensus 137 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 137 GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875699999999995 688899999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 216 g~~~~l~ 222 (359)
T 2yyz_A 216 GTPDEVY 222 (359)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9999875
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.2e-46 Score=401.48 Aligned_cols=218 Identities=21% Similarity=0.283 Sum_probs=195.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~~~ 67 (372)
T 1g29_1 3 GVRLVDVWKVF--GEVTAVREMSLEV-----KDGEFMILLGPS-----GCGKTTTLRMIAGLEEP---SRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred EEEEEeEEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CcHHHHHHHHHHcCCCC---CccEEEECCEEC
Confidence 36899999997 7788999999999 677788888776 89999999999999999 599999999987
Q ss_pred Cc--------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 97 EG--------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 97 ~~--------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
.. ..++.+|||||+..++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++++
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~~----- 139 (372)
T 1g29_1 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKPRE----- 139 (372)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCGGG-----
T ss_pred ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCccc-----
Confidence 43 245789999999999999999999999876542 24455667899999999999999998776
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ +++..+|||+++|++
T Consensus 140 ---LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~ 215 (372)
T 1g29_1 140 ---LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNR 215 (372)
T ss_dssp ---SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999875699999999995 688899999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~l~ 228 (372)
T 1g29_1 216 GVLQQVGSPDEVY 228 (372)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHH
Confidence 9999999999875
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-46 Score=382.99 Aligned_cols=219 Identities=18% Similarity=0.243 Sum_probs=194.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|++
T Consensus 14 ~~l~i~~l~~~y--~~~~vl~~vsl~i-----~~Gei~~l~G~N-----GsGKSTLlk~l~Gl~~p---~~G~I~~~g~~ 78 (256)
T 1vpl_A 14 GAVVVKDLRKRI--GKKEILKGISFEI-----EEGEIFGLIGPN-----GAGKTTTLRIISTLIKP---SSGIVTVFGKN 78 (256)
T ss_dssp CCEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTEE
T ss_pred CeEEEEEEEEEE--CCEEEEEeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEE
Confidence 567899999997 6778999999999 677888888887 89999999999999999 59999999999
Q ss_pred cCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 96 VEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 96 ~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
+.. ..++.+|||+|++.+++.+||+||+.+...... .+..+.+++++++++.+||.+..++++++ |
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------L 147 (256)
T 1vpl_A 79 VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVST--------Y 147 (256)
T ss_dssp TTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGGG--------C
T ss_pred CCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCChhh--------C
Confidence 854 356789999999999999999999999765432 12334456788999999999988888777 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++||++ +++.++||++++|++|+++
T Consensus 148 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGTIV 225 (256)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 699999999996 6788889999999999999
Q ss_pred EecChHHHHH
Q psy2519 253 FIGSKDAALA 262 (622)
Q Consensus 253 ~~G~~~~~~~ 262 (622)
+.|+++++.+
T Consensus 226 ~~g~~~~~~~ 235 (256)
T 1vpl_A 226 ETGTVEELKE 235 (256)
T ss_dssp EEEEHHHHHH
T ss_pred EecCHHHHHH
Confidence 9999988754
No 13
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=7.9e-47 Score=402.23 Aligned_cols=218 Identities=21% Similarity=0.258 Sum_probs=189.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 75 (372)
T 1v43_A 11 EVKLENLTKRF--GNFTAVNKLNLTI-----KDGEFLVLLGPS-----GCGKTTTLRMIAGLEEP---TEGRIYFGDRDV 75 (372)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred eEEEEEEEEEE--CCEEEEeeeEEEE-----CCCCEEEEECCC-----CChHHHHHHHHHcCCCC---CceEEEECCEEC
Confidence 47899999997 7778999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||+..++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++++ |||
T Consensus 76 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~~--------LSG 144 (372)
T 1v43_A 76 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK---FPKDEIDKRVRWAAELLQIEELLNRYPAQ--------LSG 144 (372)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC--C---CCHHHHHHHHHHHHHHTTCGGGTTSCTTT--------CCS
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhHhcCChhh--------CCH
Confidence 64 346789999999999999999999999754432 24455667899999999999999999776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ +++..+|||+++|++|+++..
T Consensus 145 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~ 223 (372)
T 1v43_A 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQI 223 (372)
T ss_dssp SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875699999999995 688899999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 224 g~~~~l~ 230 (372)
T 1v43_A 224 GSPTEVY 230 (372)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9999875
No 14
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.8e-47 Score=400.93 Aligned_cols=218 Identities=20% Similarity=0.278 Sum_probs=195.3
Q ss_pred CcccCCcccccccccee--eeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQ--VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~--~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||+++| |+.+ +|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+
T Consensus 3 ~l~i~~l~~~y--~~~~~~vl~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~ 67 (353)
T 1oxx_K 3 RIIVKNVSKVF--KKGKVVALDNVNINI-----ENGERFGILGPS-----GAGKTTFMRIIAGLDVP---STGELYFDDR 67 (353)
T ss_dssp CEEEEEEEEEE--GGGTEEEEEEEEEEE-----CTTCEEEEECSC-----HHHHHHHHHHHHTSSCC---SEEEEEETTE
T ss_pred EEEEEeEEEEE--CCEeeeeEeceEEEE-----CCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CceEEEECCE
Confidence 47899999997 6667 999999999 677788888776 89999999999999999 5999999999
Q ss_pred ecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 95 PVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
++.. ..++.+|||||++.++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++++
T Consensus 68 ~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~~~~---- 140 (353)
T 1oxx_K 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK---MSKEEIRKRVEEVAKILDIHHVLNHFPRE---- 140 (353)
T ss_dssp EEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS---CCHHHHHHHHHHHHHHTTCGGGTTSCGGG----
T ss_pred ECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCChhh----
Confidence 8743 356789999999999999999999999765432 24455667899999999999999999776
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ +++..+|||+++|+
T Consensus 141 ----LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~ 215 (353)
T 1oxx_K 141 ----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLV 215 (353)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999875699999999995 68889999999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|+++..|+++++.
T Consensus 216 ~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 216 KGKLVQVGKPEDLY 229 (353)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999999875
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.3e-47 Score=386.56 Aligned_cols=216 Identities=23% Similarity=0.307 Sum_probs=192.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~--~~~~vL~~vsl~i-----~~Ge~~~liG~n-----GsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV--QQQALINDVSLHI-----ASGEMVAIIGPN-----GAGKSTLLRLLTGYLSP---SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECCT-----TSCHHHHHHHHTSSSCC---SSCEEEETTEET
T ss_pred eEEEEeEEEEe--CCeeEEEeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence 57899999986 7888999999999 677888888887 89999999999999999 489999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.. ..++.+||++|++.+++.+||+||+.++..... ..+.+++++++++.++|.+..++.+++ |
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~--------L 142 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDYRV--------L 142 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBGGG--------C
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCccc--------C
Confidence 64 356789999999998899999999999764431 122346788999999999999998777 9
Q ss_pred ChHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 173 SGGERKRLSFATELLT------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||+|||||+. +|++|||||||+|||+.++.++.+.|++++++.|+|||++|||+ +++.++|||+++|
T Consensus 143 SgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl 221 (266)
T 4g1u_C 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLL 221 (266)
T ss_dssp CHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEE
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEE
Confidence 9999999999999999 99999999999999999999999999999875578999999996 6888899999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 222 AQGKLVACGTPEEVL 236 (266)
T ss_dssp ETTEEEEEECHHHHC
T ss_pred ECCEEEEEcCHHHHh
Confidence 999999999999764
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3e-46 Score=372.89 Aligned_cols=211 Identities=21% Similarity=0.276 Sum_probs=186.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~y--~~~~~l~~vsl~i-----~~Ge~~~iiG~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVI--RGYEILKGISLSV-----KKGEFVSIIGAS-----GSGKSTLLYILGLLDAP---TEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEEECT-----TSCHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EEEEEeEEEEE--CCEeeEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 47899999997 6678999999999 677788888887 89999999999999999 599999999998
Q ss_pred Cc-------ccc-ccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 97 EG-------KFR-SACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 97 ~~-------~~r-~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
.. .++ +.+|||+|++.+++.+||+||+.++...+. .++.+.+++++++++.+||.+..++++++
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKPYE----- 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCGGG-----
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChhh-----
Confidence 53 122 679999999999999999999999765532 23344556789999999999999988777
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +.+ ++||++++|++
T Consensus 141 ---LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~-~~~-~~~d~v~~l~~ 214 (224)
T 2pcj_A 141 ---LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE-GGTSIVMVTHER-ELA-ELTHRTLEMKD 214 (224)
T ss_dssp ---SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHH-TTSSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHH-HhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999987 499999999996 455 89999999999
Q ss_pred CceEEecC
Q psy2519 249 SRTAFIGS 256 (622)
Q Consensus 249 G~iv~~G~ 256 (622)
|++++.|+
T Consensus 215 G~i~~~g~ 222 (224)
T 2pcj_A 215 GKVVGEIT 222 (224)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEee
Confidence 99999886
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.3e-46 Score=395.58 Aligned_cols=214 Identities=25% Similarity=0.297 Sum_probs=191.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+. +++++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 1 ml~~~~l~~~y--~~~-~l~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~~~g~~i 64 (348)
T 3d31_A 1 MIEIESLSRKW--KNF-SLDNLSLKV-----ESGEYFVILGPT-----GAGKTLFLELIAGFHVP---DSGRILLDGKDV 64 (348)
T ss_dssp CEEEEEEEEEC--SSC-EEEEEEEEE-----CTTCEEEEECCC-----THHHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred CEEEEEEEEEE--CCE-EEeeeEEEE-----cCCCEEEEECCC-----CccHHHHHHHHHcCCCC---CCcEEEECCEEC
Confidence 36789999997 666 999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|++||+||+.|+.+.+.. ++. ++++++++.++|.+..++++++ |||
T Consensus 65 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~~~--------LSg 130 (348)
T 3d31_A 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNPLT--------LSG 130 (348)
T ss_dssp TTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCGGG--------SCH
T ss_pred CCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCChhh--------CCH
Confidence 64 3567899999999999999999999998765321 111 5788999999999999999776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ +++.++|||+++|++|+++..
T Consensus 131 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~ 209 (348)
T 3d31_A 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQV 209 (348)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999876799999999995 688899999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 210 g~~~~~~ 216 (348)
T 3d31_A 210 GKPEEIF 216 (348)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9999875
No 18
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-46 Score=376.84 Aligned_cols=213 Identities=22% Similarity=0.282 Sum_probs=187.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+ +++++|+++ ++ +.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 1 ml~~~~l~~~y--~~--~l~~isl~i-----~~-e~~~liG~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 62 (240)
T 2onk_A 1 MFLKVRAEKRL--GN--FRLNVDFEM-----GR-DYCVLLGPT-----GAGKSVFLELIAGIVKP---DRGEVRLNGADI 62 (240)
T ss_dssp CCEEEEEEEEE--TT--EEEEEEEEE-----CS-SEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred CEEEEEEEEEe--CC--EEeeeEEEE-----CC-EEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 36789999997 54 499999999 66 788888777 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||+|++.+++.+||+||+.++...+. .. ..+++++++++.+||.+..++++++ |||
T Consensus 63 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~--------LSg 129 (240)
T 2onk_A 63 TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE---RV--ERDRRVREMAEKLGIAHLLDRKPAR--------LSG 129 (240)
T ss_dssp TTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC---HH--HHHHHHHHHHHTTTCTTTTTCCGGG--------SCH
T ss_pred CcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC---Cc--hHHHHHHHHHHHcCCHHHhcCChhh--------CCH
Confidence 54 356789999999999999999999998653321 11 2256788999999999988988777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++|||+ +++.++||++++|++|++++.
T Consensus 130 GqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~ 208 (240)
T 2onk_A 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEK 208 (240)
T ss_dssp HHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865599999999996 678899999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 209 g~~~~~~ 215 (240)
T 2onk_A 209 GKLKELF 215 (240)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9998765
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.5e-46 Score=382.87 Aligned_cols=218 Identities=19% Similarity=0.223 Sum_probs=190.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ ++|+.+.++|+| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 7 ~l~i~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~liG~n-----GsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYF--GEFKALDGVSISV-----NKGDVTLIIGPN-----GSGKSTLINVITGFLKA---DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEE--TTEEEEEEECCEE-----ETTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EEEEeeeEEEE--CCEeeEeeeEEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEEC
Confidence 47899999997 7778999999999 677788888887 89999999999999999 599999999998
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHc-CCCc---------cccHHHHHHHHHHHHHHhCCCcccCCcc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALL-KLDR---------RVKAYQRIALINSLLIELGLMNSQHTRI 161 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~v 161 (622)
.. ..++.+|||+|++.+++.+||+||+.++... .... .....+.+++++++++.+||.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 53 1356799999999999999999999987533 1110 0122334567899999999999899987
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +++.++||
T Consensus 152 ~~--------LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~d 221 (257)
T 1g6h_A 152 GE--------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRL-DIVLNYID 221 (257)
T ss_dssp GG--------SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCC-STTGGGCS
T ss_pred hh--------CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCC
Confidence 77 999999999999999999999999999999999999999999999987 599999999997 57888999
Q ss_pred ceeeecCCceEEecChHH
Q psy2519 242 KIILLADSRTAFIGSKDA 259 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~ 259 (622)
|+++|++|++++.|++++
T Consensus 222 ~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 222 HLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEEEEETTEEEEEEESHH
T ss_pred EEEEEECCEEEEEeCHHH
Confidence 999999999999999887
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-46 Score=376.64 Aligned_cols=216 Identities=20% Similarity=0.265 Sum_probs=188.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYY--GAIHAIKGIDLKV-----PRGQIVTLIGAN-----GAGKTTTLSAIAGLVRA---QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred eEEEEeEEEEE--CCeeEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence 47899999997 6678999999999 677788888777 89999999999999999 599999999998
Q ss_pred Cc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-CCcccCCccCCcCCCCcc
Q psy2519 97 EG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-LMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v~~~~~~~~~ 170 (622)
.. . .++.+|||+|++.+++.+||+||+.++..... ...+..++++++++.++ |.+..++++++
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~------- 139 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGGT------- 139 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSSS-------
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC----CHHHHHHHHHHHHHHcccHhhHhcCChhh-------
Confidence 54 1 24569999999999999999999998642211 11233456788999994 98888888776
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||+ +++.++|||+++|++|+
T Consensus 140 -LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~ 216 (240)
T 1ji0_A 140 -LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQ 216 (240)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987 699999999996 67889999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 217 i~~~g~~~~~~ 227 (240)
T 1ji0_A 217 IVLEGKASELL 227 (240)
T ss_dssp EEEEEEHHHHH
T ss_pred EEEEcCHHHHh
Confidence 99999988764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.4e-45 Score=373.73 Aligned_cols=219 Identities=22% Similarity=0.332 Sum_probs=188.9
Q ss_pred CcccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
+++++||+++|..++ .++++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i-----~~Ge~~~liG~n-----GsGKSTLl~~i~Gl~~p---~~G~I~~~g 68 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVI-----NEGECLLVAGNT-----GSGKSTLLQIVAGLIEP---TSGDVLYDG 68 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETT
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CCcEEEECC
Confidence 468899999984224 67999999999 677788888877 89999999999999999 599999999
Q ss_pred EecCc-cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC--cccCCccCCcCCCCc
Q psy2519 94 KPVEG-KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM--NSQHTRIGSSSITQK 169 (622)
Q Consensus 94 ~~~~~-~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~v~~~~~~~~ 169 (622)
+++.. .+++.+|||+|++ .+++.+||+||+.++..... +..+.+++++++++.+||. +..++++++
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~------ 138 (266)
T 2yz2_A 69 ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVPFF------ 138 (266)
T ss_dssp EECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCGGG------
T ss_pred EECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCChhh------
Confidence 98864 4567899999995 56778999999998653221 1112245678999999999 888888777
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++|||+ +++.++||++++|++|
T Consensus 139 --LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tii~vtHd~-~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 139 --LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT-LGKTVILISHDI-ETVINHVDRVVVLEKG 214 (266)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCC-TTTGGGCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999987 499999999997 5777889999999999
Q ss_pred ceEEecChHHHHH
Q psy2519 250 RTAFIGSKDAALA 262 (622)
Q Consensus 250 ~iv~~G~~~~~~~ 262 (622)
++++.|+++++.+
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999987753
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.6e-45 Score=374.47 Aligned_cols=219 Identities=21% Similarity=0.289 Sum_probs=185.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ .+|+.++++|+| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 21 ~l~~~~l~~~y--~~~~vL~~isl~i-----~~Ge~~~liG~N-----GsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMK--QGKTILKKISWQI-----AKGDKWILYGLN-----GAGKTTLLNILNAYEPA---TSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTBCC
T ss_pred eEEEEeEEEEE--CCEEEEEeeeEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CCeEEEECCEEc
Confidence 47899999997 6678999999999 677888888887 89999999999999999 599999999987
Q ss_pred C--c----cccccEEEEecCCCC--CCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 97 E--G----KFRSACGFMYQHDLF--SPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 97 ~--~----~~r~~igyV~Q~~~l--~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
. . .+++.+|||+|++.+ .+.+||+||+.++...... ......+..++++++++.+||.+..++++++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 161 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGY---- 161 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGG----
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhh----
Confidence 5 2 356789999998753 3457999999885321100 0011123456788999999999989998777
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEE--EEEeccCcHHHHhhccceee
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV--LCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tv--i~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++ |+|| |++|||+ +++.++||++++
T Consensus 162 ----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v~~ 235 (279)
T 2ihy_A 162 ----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKILL 235 (279)
T ss_dssp ----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEEEE
T ss_pred ----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999874 9999 9999996 577789999999
Q ss_pred ecCCceEEecChHHH
Q psy2519 246 LADSRTAFIGSKDAA 260 (622)
Q Consensus 246 L~~G~iv~~G~~~~~ 260 (622)
|++|++++.|+++++
T Consensus 236 l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 236 LKDGQSIQQGAVEDI 250 (279)
T ss_dssp EETTEEEEEEEHHHH
T ss_pred EECCEEEEECCHHHH
Confidence 999999999998865
No 23
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.7e-44 Score=370.16 Aligned_cols=223 Identities=19% Similarity=0.211 Sum_probs=184.4
Q ss_pred cCCcccCCccccccc-cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 15 KNNEEVPNVDFSEIV-GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~-g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
..+++++||+++|.. ++.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLlk~l~Gl~~p---~~G~I~~~g 80 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTL-----YPGKVTALVGPN-----GSGKSTVAALLQNLYQP---TGGKVLLDG 80 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETT
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCCEEEECC
Confidence 357899999999732 1267999999999 677788888877 89999999999999999 599999999
Q ss_pred EecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHh--CCCcccCCccCCcCC
Q psy2519 94 KPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSI 166 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~~~~ 166 (622)
+++.. .+++.+|||+|++.+++ .||+||+.++...... ...........++++++.+ ||.+..++.+.+
T Consensus 81 ~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~--- 156 (271)
T 2ixe_A 81 EPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ--- 156 (271)
T ss_dssp EEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTT---
T ss_pred EEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCC---
Confidence 99854 25678999999998887 5999999986422111 0011111223456788888 787777887666
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||+ +.+. .||++++|
T Consensus 157 -----LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l 229 (271)
T 2ixe_A 157 -----LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFL 229 (271)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEE
Confidence 9999999999999999999999999999999999999999999999764699999999996 4554 59999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++..|+++++.
T Consensus 230 ~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 230 KEGSVCEQGTHLQLM 244 (271)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998775
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.7e-44 Score=364.62 Aligned_cols=219 Identities=21% Similarity=0.220 Sum_probs=179.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC--CCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ--VIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~--~~~~~~~~G~I~~~G~ 94 (622)
+++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||+|+|+|+ .+| .+|+|.++|+
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~ 67 (250)
T 2d2e_A 3 QLEIRDLWASI--DGETILKGVNLVV-----PKGEVHALMGPN-----GAGKSTLGKILAGDPEYTV---ERGEILLDGE 67 (250)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHHTCTTCEE---EEEEEEETTE
T ss_pred eEEEEeEEEEE--CCEEEEeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCCCC---CceEEEECCE
Confidence 47899999997 6778999999999 677788888877 89999999999998 666 6999999999
Q ss_pred ecCc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-CcccCCccCCcCCCC
Q psy2519 95 PVEG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQ 168 (622)
Q Consensus 95 ~~~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~~~~~~~ 168 (622)
++.. . .++.++||+|++.+++.+||+||+.++............+..++++++++.+|| .+..++++++
T Consensus 68 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~----- 142 (250)
T 2d2e_A 68 NILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNE----- 142 (250)
T ss_dssp ECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTC-----
T ss_pred ECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc-----
Confidence 9854 1 245699999999999999999999986532100011223345678899999999 4777777543
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh-ccceeeec
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLA 247 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~-~D~v~~L~ 247 (622)
+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++|||+ +++..+ ||++++|+
T Consensus 143 --~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~~d~v~~l~ 218 (250)
T 2d2e_A 143 --GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQ-RILNYIQPDKVHVMM 218 (250)
T ss_dssp --C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSS-GGGGTSCCSEEEEEE
T ss_pred --CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCCEEEEEE
Confidence 2999999999999999999999999999999999999999999999976 699999999997 567677 59999999
Q ss_pred CCceEEecChHH
Q psy2519 248 DSRTAFIGSKDA 259 (622)
Q Consensus 248 ~G~iv~~G~~~~ 259 (622)
+|++++.|+++.
T Consensus 219 ~G~i~~~g~~~~ 230 (250)
T 2d2e_A 219 DGRVVATGGPEL 230 (250)
T ss_dssp TTEEEEEESHHH
T ss_pred CCEEEEEeCHHH
Confidence 999999999873
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.3e-43 Score=362.80 Aligned_cols=230 Identities=18% Similarity=0.174 Sum_probs=189.0
Q ss_pred ecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCCceeeEEEE
Q psy2519 14 FKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDCIIDGDIRV 91 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~~~~G~I~~ 91 (622)
-..+++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+. +| .+|+|.+
T Consensus 17 ~~~~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~l~G~N-----GsGKSTLlk~l~Gl~~~~p---~~G~I~~ 81 (267)
T 2zu0_C 17 GSHMLSIKDLHVSV--EDKAILRGLSLDV-----HPGEVHAIMGPN-----GSGKSTLSATLAGREDYEV---TGGTVEF 81 (267)
T ss_dssp ---CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHHTCTTCEE---EEEEEEE
T ss_pred CCceEEEEeEEEEE--CCEEEEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCCCC---CCeEEEE
Confidence 34578999999997 6788999999999 677788888887 899999999999995 45 5899999
Q ss_pred CCEecCc----cc-cccEEEEecCCCCCCCCCHHHHHHHHHH-c---CCCccccHHHHHHHHHHHHHHhCCC-cccCCcc
Q psy2519 92 NGKPVEG----KF-RSACGFMYQHDLFSPSLTVYEHLYFMAL-L---KLDRRVKAYQRIALINSLLIELGLM-NSQHTRI 161 (622)
Q Consensus 92 ~G~~~~~----~~-r~~igyV~Q~~~l~~~lTV~E~l~f~~~-l---~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 161 (622)
+|+++.. .. ++.+|||+|++.+++.+||.||+.+... . ......+..+..++++++++.+||. +..++.+
T Consensus 82 ~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 161 (267)
T 2zu0_C 82 KGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV 161 (267)
T ss_dssp TTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBT
T ss_pred CCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 9999854 12 3459999999999999999999987542 1 1111122334456789999999996 5677776
Q ss_pred C-CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh-
Q psy2519 162 G-SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM- 239 (622)
Q Consensus 162 ~-~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~- 239 (622)
+ + |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +++..+
T Consensus 162 ~~~--------LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~ 231 (267)
T 2zu0_C 162 NVG--------FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQ-RILDYIK 231 (267)
T ss_dssp TTT--------CCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSG-GGGGTSC
T ss_pred ccC--------CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCH-HHHHhhc
Confidence 4 4 999999999999999999999999999999999999999999999976 599999999996 566665
Q ss_pred ccceeeecCCceEEecChHHHHHHHHhCCC
Q psy2519 240 FDKIILLADSRTAFIGSKDAALAFLESQGY 269 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~~~~~~~g~ 269 (622)
|||+++|++|++++.|+++++.. ++..++
T Consensus 232 ~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 232 PDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp CSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred CCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 89999999999999999987653 344443
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.4e-43 Score=359.70 Aligned_cols=210 Identities=22% Similarity=0.282 Sum_probs=181.7
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+++++||+++| | +.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.
T Consensus 4 ~l~i~~l~~~y--~~~~~vl~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~I~----- 63 (253)
T 2nq2_C 4 ALSVENLGFYY--QAENFLFQQLNFDL-----NKGDILAVLGQN-----GCGKSTLLDLLLGIHRP---IQGKIE----- 63 (253)
T ss_dssp EEEEEEEEEEE--TTTTEEEEEEEEEE-----ETTCEEEEECCS-----SSSHHHHHHHHTTSSCC---SEEEEE-----
T ss_pred eEEEeeEEEEe--CCCCeEEEEEEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEE-----
Confidence 47899999997 5 678999999999 677788888887 89999999999999999 599998
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.++.+|||+|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++.+++ |||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSg 131 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS--------LSG 131 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG--------SCH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhh--------CCH
Confidence 256799999999999999999999987532210 0001123356788999999999988988777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++|||+ +++.++||++++|++|+ ++.
T Consensus 132 Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~ 209 (253)
T 2nq2_C 132 GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKF 209 (253)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-Eec
Confidence 9999999999999999999999999999999999999999999874499999999996 67888999999999999 999
Q ss_pred cChHHH
Q psy2519 255 GSKDAA 260 (622)
Q Consensus 255 G~~~~~ 260 (622)
|+++++
T Consensus 210 g~~~~~ 215 (253)
T 2nq2_C 210 GETRNI 215 (253)
T ss_dssp EEHHHH
T ss_pred CCHHHH
Confidence 998865
No 27
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=7.6e-44 Score=370.26 Aligned_cols=216 Identities=22% Similarity=0.345 Sum_probs=177.4
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+..++++||+|+|. ++.++|+++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 51 ~~~i~~~~vs~~y~-~~~~vL~~isl~i-----~~Ge~vaivG~s-----GsGKSTLl~ll~gl~~p---~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA-DGRETLQDVSFTV-----MPGQTLALVGPS-----GAGKSTILRLLFRFYDI---SSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS-TTCEEEEEEEEEE-----CTTCEEEEESSS-----CHHHHHHHHHHTTSSCC---SEEEEEETTE
T ss_pred CCeEEEEEEEEEcC-CCCceeeeeeEEE-----cCCCEEEEECCC-----CchHHHHHHHHHcCCCC---CCcEEEECCE
Confidence 35689999999984 4577999999999 678888888776 89999999999999999 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~ 163 (622)
++.. .+|+.+|||+|++.+++ .||+|||.++.... .. ++++++++.+++.+ ..++.++.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~-----~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTA-----GN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTC-----CH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccC-----CH----HHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 9865 36889999999998885 59999999864321 11 12334444444433 23344443
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....|||||||||+|||||+.+|++|||||||+|||+.+...+.+.|+++.+ ++|+|++||++ +.+. .||+|
T Consensus 187 ----~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~~-~aD~i 258 (306)
T 3nh6_A 187 ----RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRL-STVV-NADQI 258 (306)
T ss_dssp ----TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSH-HHHH-TCSEE
T ss_pred ----CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcCh-HHHH-cCCEE
Confidence 1234999999999999999999999999999999999999999999999964 68999999996 5665 49999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+++++..
T Consensus 259 ~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 259 LVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998763
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.4e-43 Score=358.73 Aligned_cols=206 Identities=20% Similarity=0.251 Sum_probs=182.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++ ++|+++|+++ .+|+.+.++|+| |||||||||+|+|+.+| . |+|.++|+++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i-----~~Ge~~~liG~N-----GsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~ 63 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEV-----RAGEILHLVGPN-----GAGKSTLLARMAGMTSG---K-GSIQFAGQPL 63 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEE-----ETTCEEEEECCT-----TSSHHHHHHHHTTSSCC---E-EEEEETTEEG
T ss_pred EEEEEceEEE------EEEeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---C-eEEEECCEEC
Confidence 4688999986 5899999999 677788888887 89999999999999998 6 9999999997
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.. .+++.+|||+|++.+++.+||+||+.++. ... .. +++++++++.+||.+..++.+.+ |
T Consensus 64 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~--------L 127 (249)
T 2qi9_C 64 EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-HDK---TR----TELLNDVAGALALDDKLGRSTNQ--------L 127 (249)
T ss_dssp GGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC-SST---TC----HHHHHHHHHHTTCGGGTTSBGGG--------C
T ss_pred CcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh-ccC---Cc----HHHHHHHHHHcCChhHhcCChhh--------C
Confidence 53 35678999999999999999999998852 111 11 35678999999999988888776 9
Q ss_pred ChHHHHHHHHHHHHhhCCC-------eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 173 SGGERKRLSFATELLTDPA-------LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~-------lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||+|||||+.+|+ +|||||||+|||+.++..+.+.|+++++ +|+|||++|||+ +.+.++||++++
T Consensus 128 SgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~d~v~~ 205 (249)
T 2qi9_C 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ-QGLAIVMSSHDL-NHTLRHAHRAWL 205 (249)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 9999999999999999999 9999999999999999999999999987 499999999996 678889999999
Q ss_pred ecCCceEEecChHHH
Q psy2519 246 LADSRTAFIGSKDAA 260 (622)
Q Consensus 246 L~~G~iv~~G~~~~~ 260 (622)
|++|++++.|+++++
T Consensus 206 l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 206 LKGGKMLASGRREEV 220 (249)
T ss_dssp EETTEEEEEEEHHHH
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998876
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.9e-43 Score=357.65 Aligned_cols=214 Identities=21% Similarity=0.303 Sum_probs=176.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+|..++.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSI-----KQGEVIGIVGRS-----GSGKSTLTKLIQRFYIP---ENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETTEET
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEEh
Confidence 46789999997323568999999999 677888888777 89999999999999999 599999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCcc-------CCcC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI-------GSSS 165 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-------~~~~ 165 (622)
.. .+++.+|||+|++.+++ .||+||+.++.. ... .++++++++.+++.+..++.+ +.
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-- 141 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-- 141 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST--
T ss_pred hhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC--
Confidence 54 35678999999998886 599999988521 111 124566777777765443321 11
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
....|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++ .|+|||++||++ +.+ +.||++++
T Consensus 142 --~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~-~~~-~~~d~v~~ 215 (247)
T 2ff7_A 142 --QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRL-STV-KNADRIIV 215 (247)
T ss_dssp --TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSG-GGG-TTSSEEEE
T ss_pred --CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCH-HHH-HhCCEEEE
Confidence 112399999999999999999999999999999999999999999999994 489999999997 455 46999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+++++.
T Consensus 216 l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 216 MEKGKIVEQGKHKELL 231 (247)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999998764
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-43 Score=349.29 Aligned_cols=204 Identities=17% Similarity=0.268 Sum_probs=175.4
Q ss_pred ecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 14 FKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
.|..++++||+++| |+ ++++++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|
T Consensus 7 ~~~~l~~~~ls~~y--~~-~il~~vsl~i-----~~Ge~~~iiG~N-----GsGKSTLlk~l~Gl~~p---~~G~I~~~g 70 (214)
T 1sgw_A 7 HGSKLEIRDLSVGY--DK-PVLERITMTI-----EKGNVVNFHGPN-----GIGKTTLLKTISTYLKP---LKGEIIYNG 70 (214)
T ss_dssp --CEEEEEEEEEES--SS-EEEEEEEEEE-----ETTCCEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETT
T ss_pred CCceEEEEEEEEEe--CC-eEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeEEEECC
Confidence 36788999999997 66 8999999999 678888888887 89999999999999999 599999999
Q ss_pred EecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 94 KPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 94 ~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
+++. ..++.+|||+|++.+++.+||+||+.++...+.. . .+ +++++++++.+||.+. ++++.+ ||
T Consensus 71 ~~~~-~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~~~~--------LS 135 (214)
T 1sgw_A 71 VPIT-KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKKLGE--------LS 135 (214)
T ss_dssp EEGG-GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSBGGG--------SC
T ss_pred EEhh-hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCChhh--------CC
Confidence 9886 5678899999999999999999999997654321 1 11 3467889999999887 877666 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++||++ +++..++|+++++ +|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIISSREE-LSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSEEEEEESSC-CTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999999999999999987 489999999997 5788888998866 4443
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-43 Score=354.94 Aligned_cols=217 Identities=23% Similarity=0.256 Sum_probs=179.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++|. |+.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~y~-~~~~vl~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD-DSEQILRDISFEA-----QPNSIIAFAGPS-----GGGKSTIFSLLERFYQP---TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS-SSSCSEEEEEEEE-----CTTEEEEEECCT-----TSSHHHHHHHHTTSSCC---SBSCEEETTEEST
T ss_pred EEEEEEEEEeC-CCCceEEEeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEEhh
Confidence 67899999973 5677999999999 677788888777 89999999999999998 5899999999985
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccC---CcCCCCcc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG---SSSITQKV 170 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~---~~~~~~~~ 170 (622)
. .+++.+|||+|++.+++ .||+||+.++... ... .++++++++.+++.+..++... +..-....
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~ 138 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGV 138 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSB
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcC
Confidence 3 36788999999998887 4999999875211 112 2346788999999877665421 00000123
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++ .|+|||++||++ +.+ +.||++++|++|+
T Consensus 139 ~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~ 214 (243)
T 1mv5_A 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRL-STI-VDADKIYFIEKGQ 214 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSH-HHH-HHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCh-HHH-HhCCEEEEEECCE
Confidence 499999999999999999999999999999999999999999999996 489999999996 455 4699999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++..|+++++.
T Consensus 215 i~~~g~~~~~~ 225 (243)
T 1mv5_A 215 ITGSGKHNELV 225 (243)
T ss_dssp ECCCSCHHHHH
T ss_pred EEEeCCHHHHH
Confidence 99999998765
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2e-42 Score=352.94 Aligned_cols=206 Identities=21% Similarity=0.193 Sum_probs=179.8
Q ss_pred CcccCCccccccccc----eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 17 NEEVPNVDFSEIVGS----VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~----~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+++++||+++| ++ .++++++|+++ . |+.+.++|+| |||||||||+|+|+. | .+|+|.++
T Consensus 1 ml~~~~l~~~y--~~~~~~~~il~~vsl~i-----~-Ge~~~i~G~N-----GsGKSTLlk~l~Gl~-p---~~G~I~~~ 63 (263)
T 2pjz_A 1 MIQLKNVGITL--SGKGYERFSLENINLEV-----N-GEKVIILGPN-----GSGKTTLLRAISGLL-P---YSGNIFIN 63 (263)
T ss_dssp CEEEEEEEEEE--EEETTEEEEEEEEEEEE-----C-SSEEEEECCT-----TSSHHHHHHHHTTSS-C---CEEEEEET
T ss_pred CEEEEEEEEEe--CCCCccceeEEeeeEEE-----C-CEEEEEECCC-----CCCHHHHHHHHhCCC-C---CCcEEEEC
Confidence 36789999997 44 77999999999 6 7777888776 899999999999999 8 49999999
Q ss_pred CEecCc-cccccEE-EEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCc
Q psy2519 93 GKPVEG-KFRSACG-FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQK 169 (622)
Q Consensus 93 G~~~~~-~~r~~ig-yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~ 169 (622)
|+++.. ..++.+| ||+|++.+ .+||+||+.++..... . ..++++++++.+||. +..++++++
T Consensus 64 g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~---~----~~~~~~~~l~~~gl~~~~~~~~~~~------ 128 (263)
T 2pjz_A 64 GMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKG---L----DRDLFLEMLKALKLGEEILRRKLYK------ 128 (263)
T ss_dssp TEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTC---C----CHHHHHHHHHHTTCCGGGGGSBGGG------
T ss_pred CEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcc---h----HHHHHHHHHHHcCCChhHhcCChhh------
Confidence 998753 2267899 99999877 8999999999765431 1 134578899999998 888888776
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc-ceeeecC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD-KIILLAD 248 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D-~v~~L~~ 248 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ |||++|||+ +++.++|| ++++|++
T Consensus 129 --LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~----tviivtHd~-~~~~~~~d~~i~~l~~ 201 (263)
T 2pjz_A 129 --LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK----EGILVTHEL-DMLNLYKEYKAYFLVG 201 (263)
T ss_dssp --SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS----EEEEEESCG-GGGGGCTTSEEEEEET
T ss_pred --CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC----cEEEEEcCH-HHHHHhcCceEEEEEC
Confidence 999999999999999999999999999999999999999999998842 999999996 57778999 9999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|++++.|+++++.
T Consensus 202 G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 202 NRLQGPISVSELL 214 (263)
T ss_dssp TEEEEEEEHHHHH
T ss_pred CEEEEecCHHHHH
Confidence 9999999998775
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=9.1e-42 Score=347.90 Aligned_cols=216 Identities=25% Similarity=0.359 Sum_probs=174.7
Q ss_pred ecCCcccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 14 FKNNEEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+..+++++||+++|..++ .++|+++|+++ .+|+.++++|+| |||||||||+|+|+.+| +|+|.++
T Consensus 14 ~~~~l~i~~l~~~y~~~~~~~vl~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~----~G~I~i~ 79 (260)
T 2ghi_A 14 FGVNIEFSDVNFSYPKQTNHRTLKSINFFI-----PSGTTCALVGHT-----GSGKSTIAKLLYRFYDA----EGDIKIG 79 (260)
T ss_dssp HCCCEEEEEEEECCTTCCSSCSEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHTTSSCC----EEEEEET
T ss_pred cCCeEEEEEEEEEeCCCCcCceeEeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhccCCC----CeEEEEC
Confidence 346789999999973221 46999999999 677888888777 89999999999999875 7999999
Q ss_pred CEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-------cCCcc
Q psy2519 93 GKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-------QHTRI 161 (622)
Q Consensus 93 G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v 161 (622)
|+++.. .+++.+|||+|++.+++ .||+||+.++. .. ... +++.++++.+++.+. .++.+
T Consensus 80 g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~-~~----~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~ 149 (260)
T 2ghi_A 80 GKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGK-LD----ATD----EEVIKATKSAQLYDFIEALPKKWDTIV 149 (260)
T ss_dssp TEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTC-TT----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCEE
T ss_pred CEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccC-CC----CCH----HHHHHHHHHhCCHHHHHhccccccccc
Confidence 999854 35788999999998886 59999998852 11 111 234566666665432 23322
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
+.. + ..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++ .|+|||++||++ +.+ +.||
T Consensus 150 ~~~-~---~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~tviivtH~~-~~~-~~~d 221 (260)
T 2ghi_A 150 GNK-G---MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNRTLIIIAHRL-STI-SSAE 221 (260)
T ss_dssp SSS-S---BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTSEEEEECSSG-GGS-TTCS
T ss_pred cCC-c---CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEcCCH-HHH-HhCC
Confidence 220 2 2399999999999999999999999999999999999999999999995 379999999997 455 4699
Q ss_pred ceeeecCCceEEecChHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~ 261 (622)
++++|++|+++..|+++++.
T Consensus 222 ~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 222 SIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998775
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=370.00 Aligned_cols=219 Identities=18% Similarity=0.223 Sum_probs=183.1
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+..++++||+|+|..|+.++|+++||++ ++|+.+.++|+| |||||||||+|+|+.+ .+|+|.++|+
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i-----~~Ge~~~llGps-----GsGKSTLLr~iaGl~~----~~G~I~i~G~ 82 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSI-----SPGQRVGLLGRT-----GSGKSTLLSAFLRLLN----TEGEIQIDGV 82 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEE-----CTTCEEEEEEST-----TSSHHHHHHHHHTCSE----EEEEEEESSC
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEE-----cCCCEEEEECCC-----CChHHHHHHHHhCCCC----CCeEEEECCE
Confidence 4578999999998657788999999999 678888888876 8999999999999986 3899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCc---CCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS---SIT 167 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~---~~~ 167 (622)
++.. .+++.+|||||++.+++ +||+||+.+.. ... +++++++++.++|.+..++++... .-.
T Consensus 83 ~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~ 151 (390)
T 3gd7_A 83 SWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151 (390)
T ss_dssp BTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECT
T ss_pred ECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccc
Confidence 9864 35788999999999987 59999996421 111 245778999999988777764320 000
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
....|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++. .++|+|++|||+ + ....||||++|+
T Consensus 152 ~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~-e-~~~~aDri~vl~ 227 (390)
T 3gd7_A 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI-E-AMLECDQFLVIE 227 (390)
T ss_dssp TTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS-G-GGTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH-H-HHHhCCEEEEEE
Confidence 122399999999999999999999999999999999999999999999874 479999999996 3 446799999999
Q ss_pred CCceEEecChHHHHH
Q psy2519 248 DSRTAFIGSKDAALA 262 (622)
Q Consensus 248 ~G~iv~~G~~~~~~~ 262 (622)
+|+++..|+++++.+
T Consensus 228 ~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 228 ENKVRQYDSILELYH 242 (390)
T ss_dssp TTEEEEESSHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998863
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.2e-40 Score=333.50 Aligned_cols=204 Identities=22% Similarity=0.307 Sum_probs=163.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|..|+.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKI-----ERGQLLAVAGST-----GAGKTSLLMMIMGELEP---SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEE-----ETTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEECS---
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCcC---CccEEEECC---
Confidence 47899999998545678999999999 677888888877 89999999999999999 599999998
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccC-------CccCCcCCCCc
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH-------TRIGSSSITQK 169 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~v~~~~~~~~ 169 (622)
.+|||+|++.+++. ||+||+.++... ... +.++.++.+++.+..+ +.++. ..
T Consensus 70 ------~i~~v~q~~~~~~~-tv~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~ 128 (229)
T 2pze_A 70 ------RISFCSQFSWIMPG-TIKENIIFGVSY------DEY----RYRSVIKACQLEEDISKFAEKDNIVLGE----GG 128 (229)
T ss_dssp ------CEEEECSSCCCCSB-CHHHHHHTTSCC------CHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT----TC
T ss_pred ------EEEEEecCCcccCC-CHHHHhhccCCc------ChH----HHHHHHHHhCcHHHHHhCcccccccccC----CC
Confidence 39999999988886 999999885311 111 1223444444433222 22221 12
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~-l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+. +++++ .|+|||++||++ +.+ +.||++++|++
T Consensus 129 ~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~-~~~-~~~d~v~~l~~ 204 (229)
T 2pze_A 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHE 204 (229)
T ss_dssp TTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHCSEEEEEET
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCh-HHH-HhCCEEEEEEC
Confidence 23999999999999999999999999999999999999999997 46664 379999999996 455 46999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|++++.|+++++.
T Consensus 205 G~i~~~g~~~~~~ 217 (229)
T 2pze_A 205 GSSYFYGTFSELQ 217 (229)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEECCHHHHH
Confidence 9999999998764
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=334.00 Aligned_cols=206 Identities=18% Similarity=0.320 Sum_probs=162.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|..++.++|+++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~I~~~g--- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSI-----PEGALVAVVGQV-----GCGKSSLLSALLAEMDK---VEGHVAIKG--- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHTTCSEE---EEEEEEECS---
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECC---
Confidence 47899999997322578999999999 678888888777 89999999999999998 699999998
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-----ccCCccCCcCCCCccc
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-----SQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~v~~~~~~~~~g 171 (622)
.+|||+|++.+ +.+||+||+.++.... . ...+......++.+.+++.+ ..++.+.+
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~~--~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 127 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQLE--E--PYYRSVIQACALLPDLEILPSGDRTEIGEKGVN-------- 127 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCCC--T--THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBC--------
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCccccC--H--HHHHHHHHHHhhHHHHHhccccccccccCCCCC--------
Confidence 39999999764 6889999998864221 1 11111111112233444322 12344333
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR---ELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~---~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+ +++ .|+|||++||++. .+ +.||++++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999995 443 4899999999973 55 57999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|+++..|+++++.
T Consensus 204 G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 204 GKISEMGSYQELL 216 (237)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998765
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.1e-41 Score=378.29 Aligned_cols=217 Identities=20% Similarity=0.258 Sum_probs=178.1
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+..++++||+|+|+.++.++|+++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.+||+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i-----~~Ge~~~ivG~s-----GsGKSTll~~l~g~~~~---~~G~i~i~g~ 405 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSV-----KPGSLVAVLGET-----GSGKSTLMNLIPRLIDP---ERGRVEVDEL 405 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEE-----CTTCEEEEECSS-----SSSHHHHHHTTTTSSCC---SEEEEEESSS
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCccC---CCcEEEECCE
Confidence 4578999999998666778999999999 678888888776 89999999999999999 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~ 163 (622)
++.. .+|+++|||+|++.+++. ||+||+.++.... +.++ +.+.++..++ .+..++.+++
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~-----~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~ 475 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGREDA-----TDDE----IVEAAKIAQIHDFIISLPEGYDSRVER 475 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSSC-----CHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS
T ss_pred EcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCCC-----CHHH----HHHHHHHhCcHHHHHhcccchhhHhcC
Confidence 9865 368899999999998875 9999998763211 1111 2222333322 2334455544
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+.+|++|+|||||++||+.+..++.+.|+++. +|+|+|++||++ +.+ +.||||
T Consensus 476 ----~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l-~~~-~~~d~i 547 (587)
T 3qf4_A 476 ----GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKI-PTA-LLADKI 547 (587)
T ss_dssp ----SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCH-HHH-TTSSEE
T ss_pred ----CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCh-HHH-HhCCEE
Confidence 123399999999999999999999999999999999999999999999985 489999999996 444 689999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+++|+.+
T Consensus 548 ~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 548 LVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998763
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.2e-40 Score=374.41 Aligned_cols=217 Identities=22% Similarity=0.314 Sum_probs=179.8
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+..++++||+|+|+.++.++|+++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i-----~~G~~~~ivG~s-----GsGKSTll~~l~g~~~p---~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSI-----EKGETVAFVGMS-----GGGKSTLINLIPRFYDV---TSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHTTTTTSSCC---SEEEEEETTE
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEE-----CCCCEEEEECCC-----CChHHHHHHHHhcCCCC---CCcEEEECCE
Confidence 4568999999998655678999999999 678888888776 89999999999999999 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~ 163 (622)
++.. .+|+++|||+|++.+++. ||+||+.++... .+. +++.+.++..++. +..++.+++
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPT-----ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS-----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC-----CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 9865 368899999999998876 999999886311 111 2234445555443 334555554
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.++++. +|+|+|++||++ +.+ +.||||
T Consensus 474 ----~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l-~~~-~~~d~i 545 (578)
T 4a82_A 474 ----RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRL-STI-THADKI 545 (578)
T ss_dssp ----GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSG-GGT-TTCSEE
T ss_pred ----CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HHH-HcCCEE
Confidence 123499999999999999999999999999999999999999999999985 478999999997 455 569999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+++|+.+
T Consensus 546 ~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 546 VVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998763
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6.9e-40 Score=370.75 Aligned_cols=218 Identities=23% Similarity=0.299 Sum_probs=181.2
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+|+|+.++.++|+++|+++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.+||+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i-----~~G~~~~ivG~s-----GsGKSTLl~~l~g~~~p---~~G~i~~~g~ 405 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKI-----PAGKTVALVGRS-----GSGKSTIASLITRFYDI---DEGHILMDGH 405 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEE-----CTTCEEEEEECT-----TSSHHHHHHHHTTTTCC---SEEEEEETTE
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhhccCC---CCCeEEECCE
Confidence 4568999999998423367999999999 788888888887 89999999999999999 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-------cCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-------QHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v~~ 163 (622)
++.. .+|+.+|||+|++.+++. ||+||+.++.. . ..+ +++++++++.+++.+. .|+.+++
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~---~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~ 476 (582)
T 3b60_A 406 DLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-E---EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE 476 (582)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-S---CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred EccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-C---CCC----HHHHHHHHHHcCCHHHHHhccccccccccC
Confidence 9864 367889999999998875 99999998631 1 112 2345667777776543 3444544
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+.+|++|+|||||++||+.++.++.+.|+++++ |+|+|++||++ +.+ +.|||+
T Consensus 477 ----~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~-~~~-~~~d~i 548 (582)
T 3b60_A 477 ----NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL-STI-EQADEI 548 (582)
T ss_dssp ----TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCG-GGT-TTCSEE
T ss_pred ----CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccH-HHH-HhCCEE
Confidence 1234999999999999999999999999999999999999999999999963 89999999997 455 579999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+++++.+
T Consensus 549 ~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 549 VVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEecCHHHHHH
Confidence 9999999999999998753
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=8.7e-40 Score=369.90 Aligned_cols=217 Identities=23% Similarity=0.298 Sum_probs=180.6
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+|+|+.++.++|+++|+++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.+||+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i-----~~G~~~~ivG~s-----GsGKSTll~~l~g~~~p---~~G~i~~~g~ 405 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSI-----PQGKTVALVGRS-----GSGKSTIANLFTRFYDV---DSGSICLDGH 405 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCCEEEECCE
Confidence 3568999999998433367999999999 678888888776 89999999999999999 5899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc-------CCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-------HTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v~~ 163 (622)
++.+ .+|+.+|||+|++.+++. ||+||+.++.. + ..+ +++++++++.+++.+.. |+.+++
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~ 476 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE 476 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC
Confidence 9854 467899999999998875 99999998631 1 112 23456777777775443 344443
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+.+|++|+|||||++||+.++.++.+.|++++ +|+|+|++||++ +.+ +.||++
T Consensus 477 ----~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~-~~~-~~~d~i 548 (582)
T 3b5x_A 477 ----NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLVIAHRL-STI-EQADEI 548 (582)
T ss_pred ----CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HHH-HhCCEE
Confidence 123499999999999999999999999999999999999999999999986 389999999997 455 579999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|++++.|+++++.
T Consensus 549 ~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 549 LVVDEGEIIERGRHADLL 566 (582)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999999875
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.5e-39 Score=368.91 Aligned_cols=216 Identities=24% Similarity=0.323 Sum_probs=178.9
Q ss_pred cccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 18 EEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 18 ~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++++||+|+|+.+ +.++|+++|+++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.+||+++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i-----~~G~~~~ivG~s-----GsGKSTLl~~l~g~~~p---~~G~i~~~g~~i 408 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSI-----PSGSVTALVGPS-----GSGKSTVLSLLLRLYDP---ASGTISLDGHDI 408 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEE-----CTTCEEEEECCT-----TSSSTHHHHHHTTSSCC---SEEEEEETTEET
T ss_pred EEEEEEEEEeCCCCCCccccceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCcEEEECCEEh
Confidence 8899999998432 357999999999 678888888776 89999999999999999 599999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCCcC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSSS 165 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~~~ 165 (622)
.. .+|+++|||+|++.+++. ||+||+.++.... ...+ +++++++++.+++.+ ..|+.+++.
T Consensus 409 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~- 480 (595)
T 2yl4_A 409 RQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEK- 480 (595)
T ss_dssp TTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS-
T ss_pred hhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCC-
Confidence 64 367889999999998875 9999999864221 0112 234667788877643 345666541
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
...||||||||++|||||+.+|++|+|||||++||+.++.++.+.|+++++ |+|+|++||++ +.+ +.|||+++
T Consensus 481 ---~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~-~~~-~~~d~i~~ 553 (595)
T 2yl4_A 481 ---GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRL-STI-KNANMVAV 553 (595)
T ss_dssp ---SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCH-HHH-HHSSEEEE
T ss_pred ---CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHH-HcCCEEEE
Confidence 234999999999999999999999999999999999999999999999974 79999999996 455 56999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+++++.
T Consensus 554 l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 554 LDQGKITEYGKHEELL 569 (595)
T ss_dssp EETTEEEEEECSCC--
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999998765
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.7e-40 Score=370.39 Aligned_cols=216 Identities=21% Similarity=0.254 Sum_probs=176.6
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+|+|. ++.++|+++|+++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.+||+
T Consensus 352 ~~~i~~~~v~~~y~-~~~~~l~~isl~i-----~~G~~~~ivG~s-----GsGKSTll~~l~g~~~p---~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYD-KKKPVLKDITFHI-----KPGQKVALVGPT-----GSGKTTIVNLLMRFYDV---DRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSS-SSSCSCCSEEEEC-----CTTCEEEEECCT-----TSSTTHHHHHHTTSSCC---SEEEEEETTE
T ss_pred CCeEEEEEEEEECC-CCCccccceEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCcCC---CCeEEEECCE
Confidence 45689999999983 4567999999999 678888888776 89999999999999999 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~ 163 (622)
++.. .+|+++|||+|++.+++. ||+||+.++.... ++ +++.++++..++.+ ..++.+++
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPGA-----TD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTTC-----CT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCCC-----CH----HHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 9865 368899999999988864 9999998853211 11 12334444444433 33444433
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+.+|++|+|||||++||+.+..++.+.|+++. +|+|+|++||++. .+ +.||+|
T Consensus 488 ----~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~~-~~~d~i 559 (598)
T 3qf4_B 488 ----NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLN-TI-KNADLI 559 (598)
T ss_dssp ----HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTT-HH-HHCSEE
T ss_pred ----CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HcCCEE
Confidence 123499999999999999999999999999999999999999999999995 4899999999974 55 459999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+++++.+
T Consensus 560 ~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 560 IVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EEECSSSEEECSCHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998763
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.2e-37 Score=321.69 Aligned_cols=203 Identities=20% Similarity=0.298 Sum_probs=150.3
Q ss_pred eecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 13 LFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
.....++++||++. ..++++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++
T Consensus 36 ~~~~~l~~~~l~~~----~~~vl~~isl~i-----~~Ge~~~i~G~N-----GsGKSTLlk~l~Gl~~p---~~G~I~~~ 98 (290)
T 2bbs_A 36 NGDDSLSFSNFSLL----GTPVLKDINFKI-----ERGQLLAVAGST-----GAGKTSLLMMIMGELEP---SEGKIKHS 98 (290)
T ss_dssp ------------------CCCSEEEEEEEE-----CTTCEEEEEEST-----TSSHHHHHHHHTTSSCE---EEEEEECC
T ss_pred CCCceEEEEEEEEc----CceEEEeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CCcEEEEC
Confidence 34467899999985 257899999999 678888888887 89999999999999998 69999999
Q ss_pred CEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccC-------CccCCcC
Q psy2519 93 GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH-------TRIGSSS 165 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~v~~~~ 165 (622)
| .+|||+|++.+++. ||+||+. +. .. ... ++++.++.+++.+..+ +.++.
T Consensus 99 g---------~i~~v~Q~~~l~~~-tv~enl~-~~--~~----~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-- 155 (290)
T 2bbs_A 99 G---------RISFCSQNSWIMPG-TIKENII-GV--SY----DEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-- 155 (290)
T ss_dssp S---------CEEEECSSCCCCSS-BHHHHHH-TT--CC----CHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----
T ss_pred C---------EEEEEeCCCccCcc-cHHHHhh-Cc--cc----chH----HHHHHHHHhChHHHHHhccccccchhcC--
Confidence 8 49999999988885 9999997 32 11 111 1233444455533221 12221
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM-RELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l-~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|++|||||||+|||+.++.++.+.+ ++++ .|+|||++||++ +.+ +.||+++
T Consensus 156 --~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~-~~~-~~~d~i~ 229 (290)
T 2bbs_A 156 --GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKIL 229 (290)
T ss_dssp ----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHSSEEE
T ss_pred --ccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH-HHH-HcCCEEE
Confidence 01239999999999999999999999999999999999999999974 5664 489999999996 455 4699999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 230 ~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 230 ILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCeEEEeCCHHHHh
Confidence 99999999999998875
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8e-38 Score=382.01 Aligned_cols=220 Identities=18% Similarity=0.253 Sum_probs=185.8
Q ss_pred ecCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 14 FKNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
..+.++++||+|+|+.+ +.++|+|+|+++ ++|+++.|+|++ |||||||+++|.|+..| .+|+|.+|
T Consensus 1073 ~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I-----~~Ge~vaIVG~S-----GsGKSTL~~lL~rl~~p---~~G~I~iD 1139 (1321)
T 4f4c_A 1073 LYGKVIFKNVRFAYPERPEIEILKGLSFSV-----EPGQTLALVGPS-----GCGKSTVVALLERFYDT---LGGEIFID 1139 (1321)
T ss_dssp CCCCEEEEEEEECCTTSCSSCSEEEEEEEE-----CTTCEEEEECST-----TSSTTSHHHHHTTSSCC---SSSEEEET
T ss_pred CCCeEEEEEEEEeCCCCCCCccccceeEEE-----CCCCEEEEECCC-----CChHHHHHHHHhcCccC---CCCEEEEC
Confidence 34578999999999644 468999999999 788888888775 89999999999999999 58999999
Q ss_pred CEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCcc
Q psy2519 93 GKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRI 161 (622)
Q Consensus 93 G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v 161 (622)
|.|+.. .+|+++|||||++.+|+. |++|||.|+... ...+. +.+.++++..++ ++..|+.+
T Consensus 1140 G~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~---~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~v 1211 (1321)
T 4f4c_A 1140 GSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP---SSVTM----AQVEEAARLANIHNFIAELPEGFETRV 1211 (1321)
T ss_dssp TEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT---TTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEE
T ss_pred CEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCC---CCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEe
Confidence 999976 489999999999999877 999999876321 12222 234555665554 45678888
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
|+ ....||||||||++|||||+.+|+||+||||||+||+.+...|.+.|+++. .|+|+|+++|.++ . ...||
T Consensus 1212 ge----~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLs-T-i~~aD 1283 (1321)
T 4f4c_A 1212 GD----RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLN-T-VMNAD 1283 (1321)
T ss_dssp TT----TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSS-T-TTTCS
T ss_pred cC----CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHH-H-HHhCC
Confidence 86 234599999999999999999999999999999999999999999999876 4899999999973 3 46799
Q ss_pred ceeeecCCceEEecChHHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~~ 262 (622)
||++|++|+|++.|+++++++
T Consensus 1284 ~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1284 CIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEEEESSSSEEEEECHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999998874
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-36 Score=372.14 Aligned_cols=218 Identities=23% Similarity=0.283 Sum_probs=184.3
Q ss_pred eecCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 13 LFKNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
..++.++++||+|+|+.. +.++|+|+|+++ ++|+.++++|++ |||||||+++|.|..+| .+|+|.+
T Consensus 411 ~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i-----~~G~~vaivG~s-----GsGKSTll~ll~~~~~~---~~G~I~i 477 (1321)
T 4f4c_A 411 KIKGDITVENVHFTYPSRPDVPILRGMNLRV-----NAGQTVALVGSS-----GCGKSTIISLLLRYYDV---LKGKITI 477 (1321)
T ss_dssp CCCCCEEEEEEEECCSSSTTSCSEEEEEEEE-----CTTCEEEEEECS-----SSCHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CCCCcEEEEEeeeeCCCCCCCceeeceEEee-----cCCcEEEEEecC-----CCcHHHHHHHhcccccc---ccCcccC
Confidence 345678999999999543 578999999999 678788888775 89999999999999999 5999999
Q ss_pred CCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-------CCcccCCc
Q psy2519 92 NGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTR 160 (622)
Q Consensus 92 ~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ 160 (622)
||+|+.. .+|++||||+|++.++.. ||+|||.|+..- .+.+ ++.++++..+ |++..|+.
T Consensus 478 dG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~-----~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~ 547 (1321)
T 4f4c_A 478 DGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKEG-----ITRE----EMVAACKMANAEKFIKTLPNGYNTL 547 (1321)
T ss_dssp TTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCTT-----CCHH----HHHHHHHHTTCHHHHHHSTTTTSSE
T ss_pred CCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhccc-----chHH----HHHHHHHHccchhHHHcCCCCCccE
Confidence 9999976 478999999999998866 999999987321 1222 2344444443 45667888
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
+|+ ....||||||||++||||+..+|+||+||||||+||+.+...+.+.|+++.+ |+|+|++||+++ ..+.|
T Consensus 548 vGe----~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls--~i~~a 619 (1321)
T 4f4c_A 548 VGD----RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLS--TIRNA 619 (1321)
T ss_dssp ESS----SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTT--TTTTC
T ss_pred ecC----CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHH--HHHhC
Confidence 887 2345999999999999999999999999999999999999999999999874 899999999973 45789
Q ss_pred cceeeecCCceEEecChHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|+|++|++|+|++.|+.+|+.
T Consensus 620 D~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 620 DLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEeeCCeeeccCCHHHHH
Confidence 999999999999999999886
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.1e-36 Score=367.17 Aligned_cols=219 Identities=21% Similarity=0.289 Sum_probs=179.0
Q ss_pred cCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 15 KNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
+..++++||+|+|+.+ +.++|+++|+++ ++|+.+.++|++ |||||||+++|.|+.+| .+|+|.++|
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i-----~~G~~~~ivG~s-----GsGKSTl~~ll~g~~~~---~~G~i~i~g 451 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKV-----KSGQTVALVGNS-----GCGKSTTVQLMQRLYDP---LDGMVSIDG 451 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEE-----CTTCEEEEECCS-----SSSHHHHHHHTTTSSCC---SEEEEEETT
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECC
Confidence 4568999999998543 357999999999 778888888776 89999999999999999 599999999
Q ss_pred EecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHH-----HHHHHHHhCCCcccCCccCCc
Q psy2519 94 KPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL-----INSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~v~~~ 164 (622)
+++.. .+|+.+|||+|++.+++. ||+||+.++.... +.++..+. +++.++. +.+..|+.+|+
T Consensus 452 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~-----~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~- 522 (1284)
T 3g5u_A 452 QDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDV-----TMDEIEKAVKEANAYDFIMK--LPHQFDTLVGE- 522 (1284)
T ss_dssp EEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSSC-----CHHHHHHHHHHTTCHHHHHH--STTGGGCCCSS-
T ss_pred EEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCCC-----CHHHHHHHHHHhCcHHHHHh--ccccccccccC-
Confidence 99865 468899999999999876 9999999974211 22221111 1233333 33455666665
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. .|+|+|++||++ +.+ +.||+|+
T Consensus 523 ---~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l-~~i-~~~d~i~ 595 (1284)
T 3g5u_A 523 ---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRL-STV-RNADVIA 595 (1284)
T ss_dssp ---SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCH-HHH-TTCSEEE
T ss_pred ---CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HHH-HcCCEEE
Confidence 123499999999999999999999999999999999999999999999875 489999999996 455 4599999
Q ss_pred eecCCceEEecChHHHHH
Q psy2519 245 LLADSRTAFIGSKDAALA 262 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~~ 262 (622)
+|++|++++.|+++++.+
T Consensus 596 vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 596 GFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp ECSSSCCCCEECHHHHHH
T ss_pred EEECCEEEEECCHHHHHh
Confidence 999999999999998763
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.1e-36 Score=364.59 Aligned_cols=219 Identities=21% Similarity=0.315 Sum_probs=178.7
Q ss_pred cCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 15 KNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
+..++++||+|+|+.+ +.++|+++|+++ ++|+.+.++|+| |||||||+++|.|+.+| .+|+|.+||
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i-----~~Ge~v~ivG~s-----GsGKSTl~~~l~g~~~p---~~G~I~i~g 1094 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEV-----KKGQTLALVGSS-----GCGKSTVVQLLERFYDP---MAGSVFLDG 1094 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEE-----CSSSEEEEECSS-----STTHHHHHHHHTTSSCC---SEEEEESSS
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCCEEEECC
Confidence 3568899999998543 357999999999 788888888776 89999999999999999 599999999
Q ss_pred EecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-------CCcccCCccC
Q psy2519 94 KPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIG 162 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~v~ 162 (622)
+++.. .+|+++|||||++.+++ .||+||+.++..... .+.++ +.+.++..+ +.+..|+.+|
T Consensus 1095 ~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~---~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vg 1166 (1284)
T 3g5u_A 1095 KEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSRV---VSYEE----IVRAAKEANIHQFIDSLPDKYNTRVG 1166 (1284)
T ss_dssp SCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSCC---CCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCS
T ss_pred EEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCCC---CCHHH----HHHHHHHhCcHHHHHhCccccccccC
Confidence 99865 37889999999998775 699999987642211 12222 223333333 3445567776
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|++.. .|+|+|+++|++ +.+ +.|||
T Consensus 1167 e----~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l-~~i-~~~dr 1238 (1284)
T 3g5u_A 1167 D----KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRL-STI-QNADL 1238 (1284)
T ss_dssp T----TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCT-TGG-GSCSE
T ss_pred C----CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCH-HHH-HcCCE
Confidence 5 123599999999999999999999999999999999999999999999864 589999999997 455 56999
Q ss_pred eeeecCCceEEecChHHHHH
Q psy2519 243 IILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~~ 262 (622)
|++|++|++++.|+++++.+
T Consensus 1239 i~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1239 IVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEETBEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998763
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.2e-35 Score=332.05 Aligned_cols=205 Identities=21% Similarity=0.213 Sum_probs=175.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|+++.| |+. .++++++++ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.+
T Consensus 357 ~l~~~~l~~~~--~~~-~l~~~~~~v-----~~Gei~~i~G~N-----GsGKSTLlk~l~Gl~~p---~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDY--GSF-KLEVEPGEI-----RKGEVIGIVGPN-----GIGKTTFVKMLAGVEEP---TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEEC--SSC-EEEECCEEE-----ETTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SBSCCCC-----
T ss_pred EEEEeceEEEe--cce-EEEeccccc-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEE-----
Confidence 46778998886 554 588888888 578888888887 89999999999999999 4899976
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
++.+|||+|+..+.+.+||.|++....... ....++++++++.+||.+..++.+++ |||||
T Consensus 416 ----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSGGe 476 (607)
T 3bk7_A 416 ----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVED--------LSGGE 476 (607)
T ss_dssp ----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGGG--------CCHHH
T ss_pred ----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChhh--------CCHHH
Confidence 246999999988888899999887641110 11234678899999999888998777 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC--CceEEe
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFI 254 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~--G~iv~~ 254 (622)
||||+|||+|+.+|++|||||||+|||+.++.++.++|++++++.|.|||++|||+ +++..+|||+++|++ |+++..
T Consensus 477 ~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~ 555 (607)
T 3bk7_A 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRA 555 (607)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEec
Confidence 99999999999999999999999999999999999999999865799999999995 688899999999986 889999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++++..
T Consensus 556 g~p~~~~~ 563 (607)
T 3bk7_A 556 LPPMGMRE 563 (607)
T ss_dssp CCCEEHHH
T ss_pred CCHHHHHh
Confidence 99988764
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4e-35 Score=327.86 Aligned_cols=205 Identities=20% Similarity=0.204 Sum_probs=174.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|+++.| ++. .++++++++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.+
T Consensus 287 ~l~~~~l~~~~--~~~-~l~~~~~~i-----~~Ge~~~i~G~N-----GsGKSTLlk~l~Gl~~p---~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDY--GSF-RLEVEPGEI-----KKGEVIGIVGPN-----GIGKTTFVKMLAGVEEP---TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEE--TTE-EEEECCEEE-----ETTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SBCCCCC-----
T ss_pred EEEEeeEEEEE--CCE-EEEeCcccc-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEE-----
Confidence 36778898875 554 588888888 577888888887 89999999999999998 4899975
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
+..+|||+|+....+.+||.|++....... ....++++++++.+++.+..++.+++ |||||
T Consensus 346 ----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSGGe 406 (538)
T 1yqt_A 346 ----DLTVAYKPQYIKADYEGTVYELLSKIDASK-------LNSNFYKTELLKPLGIIDLYDREVNE--------LSGGE 406 (538)
T ss_dssp ----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HTCHHHHHHTTTTTTCGGGTTSBGGG--------CCHHH
T ss_pred ----CceEEEEecCCcCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCChhhhcCChhh--------CCHHH
Confidence 246999999987778899999886541111 01124577899999998888888777 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC--CceEEe
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFI 254 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~--G~iv~~ 254 (622)
||||+|||+|+.+|++|||||||+|||+.++.++.+.|++++++.|.|||++|||+ +++..+|||+++|++ |+++..
T Consensus 407 ~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~ 485 (538)
T 1yqt_A 407 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRA 485 (538)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeec
Confidence 99999999999999999999999999999999999999999865699999999995 788899999999986 899999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++++..
T Consensus 486 g~~~~~~~ 493 (538)
T 1yqt_A 486 LPPMGMRE 493 (538)
T ss_dssp CCCEEHHH
T ss_pred CCHHHHHh
Confidence 99988764
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-34 Score=322.37 Aligned_cols=206 Identities=17% Similarity=0.169 Sum_probs=172.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|+++.| |+. .+..+|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|
T Consensus 269 ~l~~~~l~~~~--~~~-~l~~~~~~i-----~~Gei~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKL--GDF-QLVVDNGEA-----KEGEIIGILGPN-----GIGKTTFARILVGEITA---DEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEE--TTE-EEEECCEEE-----ETTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SBCCEESSC---
T ss_pred eEEEcceEEEE--CCE-EEEeccceE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECC---
Confidence 45678888875 553 467778888 578888888887 89999999999999999 589998765
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
+.++|++|+....+.+||.||+.+....... . ....++++++.++|.+..++.+++ |||||
T Consensus 330 -----~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~~~~--------LSGGq 390 (538)
T 3ozx_A 330 -----QILSYKPQRIFPNYDGTVQQYLENASKDALS---T---SSWFFEEVTKRLNLHRLLESNVND--------LSGGE 390 (538)
T ss_dssp -----CCEEEECSSCCCCCSSBHHHHHHHHCSSTTC---T---TSHHHHHTTTTTTGGGCTTSBGGG--------CCHHH
T ss_pred -----eeeEeechhcccccCCCHHHHHHHhhhhccc---h---hHHHHHHHHHHcCCHHHhcCChhh--------CCHHH
Confidence 3589999987777789999999874221110 1 123567899999999989998777 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC--CceEEe
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFI 254 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~--G~iv~~ 254 (622)
||||+|||||+.+|++|||||||+|||+.++.++.++|++++++.|.|||+||||+ +++..+||||++|++ |.....
T Consensus 391 ~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~ 469 (538)
T 3ozx_A 391 LQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLA 469 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccC
Confidence 99999999999999999999999999999999999999999876799999999996 788899999999986 667777
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
+++.++.
T Consensus 470 ~~~~~~~ 476 (538)
T 3ozx_A 470 TSPVTLK 476 (538)
T ss_dssp CCCEEHH
T ss_pred CChHHHH
Confidence 7766543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-34 Score=321.02 Aligned_cols=208 Identities=19% Similarity=0.173 Sum_probs=170.2
Q ss_pred CCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccc
Q psy2519 21 PNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKF 100 (622)
Q Consensus 21 ~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~ 100 (622)
++++++|+ +...++++++|++.-+...+|+.+.++|+| ||||||||++|+|+++| .+|+. + .
T Consensus 350 ~~~~~~y~-~~~~~l~~vsl~v~~G~~~~GEiv~iiG~N-----GsGKSTLlk~l~Gl~~p---~~G~~------~---~ 411 (608)
T 3j16_B 350 ASRAFSYP-SLKKTQGDFVLNVEEGEFSDSEILVMMGEN-----GTGKTTLIKLLAGALKP---DEGQD------I---P 411 (608)
T ss_dssp SSSCCEEC-CEEEECSSCEEEECCEECCTTCEEEEESCT-----TSSHHHHHHHHHTSSCC---SBCCC------C---C
T ss_pred cceeEEec-CcccccCceEEEEecCccccceEEEEECCC-----CCcHHHHHHHHhcCCCC---CCCcC------c---c
Confidence 56777763 334578899999844433444667888777 89999999999999999 47752 2 1
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHH
Q psy2519 101 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180 (622)
Q Consensus 101 r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRv 180 (622)
+..++|++|+.......||+|++... .+.. ... .+.++++++.++|.+..++.+++ |||||||||
T Consensus 412 ~~~i~~~~q~~~~~~~~tv~e~~~~~--~~~~-~~~----~~~~~~~l~~l~l~~~~~~~~~~--------LSGGqkQRv 476 (608)
T 3j16_B 412 KLNVSMKPQKIAPKFPGTVRQLFFKK--IRGQ-FLN----PQFQTDVVKPLRIDDIIDQEVQH--------LSGGELQRV 476 (608)
T ss_dssp SCCEEEECSSCCCCCCSBHHHHHHHH--CSST-TTS----HHHHHHTHHHHTSTTTSSSBSSS--------CCHHHHHHH
T ss_pred CCcEEEecccccccCCccHHHHHHHH--hhcc-ccc----HHHHHHHHHHcCChhhhcCChhh--------CCHHHHHHH
Confidence 45699999987766678999987543 2211 111 23567899999999999999777 999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC--CceEEecChH
Q psy2519 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFIGSKD 258 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~--G~iv~~G~~~ 258 (622)
+|||+|+.+|++|||||||+|||+.++.++.++|++++++.|+|||++|||+ +++..+||||++|++ |+++..|+|+
T Consensus 477 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 477 AIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp HHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCE
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChH
Confidence 9999999999999999999999999999999999999765799999999996 788899999999986 9999999999
Q ss_pred HHHH
Q psy2519 259 AALA 262 (622)
Q Consensus 259 ~~~~ 262 (622)
+++.
T Consensus 556 ~~~~ 559 (608)
T 3j16_B 556 SLLT 559 (608)
T ss_dssp EHHH
T ss_pred HHhh
Confidence 8764
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.5e-33 Score=322.07 Aligned_cols=220 Identities=19% Similarity=0.229 Sum_probs=144.8
Q ss_pred cCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHH---------------------HHHhC
Q psy2519 20 VPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELI---------------------RLFLS 77 (622)
Q Consensus 20 ~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl---------------------~~l~g 77 (622)
=+|+++.|..| ..++|+++|+++ .+|+.+.++|+| |||||||+ ++++|
T Consensus 18 ~~~~~~~~~~~~~~~~L~~vsl~i-----~~Ge~~~liGpN-----GaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~ 87 (670)
T 3ux8_A 18 GSHMDKIIVKGARAHNLKNIDVEI-----PRGKLVVLTGLS-----GSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQ 87 (670)
T ss_dssp ----CEEEEEEECSTTCCSEEEEE-----ETTSEEEEECST-----TSSHHHHHTTTHHHHHHHHHHTC-----------
T ss_pred CCCcceEEEcCCCccceeccEEEE-----CCCCEEEEECCC-----CCCHHHHhcccccccccccccccchhhhhhhhcc
Confidence 35566655444 456899999999 677888888887 89999998 88888
Q ss_pred CCCCCCc----eeeEEEECCEecCccccccEEEEecCCC-------------------CCCCCCHHHHHHHHHHcCCCcc
Q psy2519 78 QVIDDCI----IDGDIRVNGKPVEGKFRSACGFMYQHDL-------------------FSPSLTVYEHLYFMALLKLDRR 134 (622)
Q Consensus 78 ~~~~~~~----~~G~I~~~G~~~~~~~r~~igyV~Q~~~-------------------l~~~lTV~E~l~f~~~l~~~~~ 134 (622)
+..|+.. ..|.|.++|.+.....++.+|+|+|... .++.+||+||+.+.........
T Consensus 88 l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~ 167 (670)
T 3ux8_A 88 MEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK 167 (670)
T ss_dssp ---CCCSEEESCCCEEEESSCC-----CCBHHHHTTCC-------------------------CC---------------
T ss_pred cccCCccceeccccceEecCchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh
Confidence 8887411 1567788887665434455666655432 3467899999988543321110
Q ss_pred ccH------HHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHH
Q psy2519 135 VKA------YQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLLCDEPTTGLDSF 205 (622)
Q Consensus 135 ~~~------~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~--lLlLDEPTsgLD~~ 205 (622)
... ++..++ .++++.+||.+. .++++++ |||||||||+|||||+.+|+ +|||||||+|||+.
T Consensus 168 ~~~~~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~--------LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 168 EAQIARLILREIRDR-LGFLQNVGLDYLTLSRSAGT--------LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp -----------CHHH-HHHHHHTTCTTCCTTCBGGG--------SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred hhHHHHHHHHHHHHH-HHHHHHcCCchhhhcCCccc--------CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 000 001111 246889999765 6888777 99999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHH
Q psy2519 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 261 (622)
Q Consensus 206 ~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 261 (622)
++.++.++|+++++ +|.|||+||||+ +.+ ..||++++| ++|++++.|+++++.
T Consensus 239 ~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 239 DNDRLIATLKSMRD-LGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCEEEEEeCCH-HHH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 99999999999987 699999999996 454 569999999 899999999999875
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.98 E-value=2.2e-33 Score=317.04 Aligned_cols=192 Identities=22% Similarity=0.203 Sum_probs=158.1
Q ss_pred CCccccccccce-eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE---------E
Q psy2519 21 PNVDFSEIVGSV-QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI---------R 90 (622)
Q Consensus 21 ~~~~~~~~~g~~-~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I---------~ 90 (622)
+||+++| |+. .+++++| ++ .+|+.+.++|+| |||||||||+|+|+++|+ +|++ .
T Consensus 95 ~~ls~~y--g~~~~~l~~vs-~i-----~~Ge~~~LiG~N-----GsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~ 158 (607)
T 3bk7_A 95 EDCVHRY--GVNAFVLYRLP-IV-----KDGMVVGIVGPN-----GTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRA 158 (607)
T ss_dssp GSEEEEC--STTCCEEECCC-CC-----CTTSEEEEECCT-----TSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHH
T ss_pred CCeEEEE--CCCCeeeCCCC-CC-----CCCCEEEEECCC-----CChHHHHHHHHhCCCCCC---CCccccccchhhhe
Confidence 8899987 554 4888888 77 578888888887 899999999999999984 7885 4
Q ss_pred ECCEecCc------cccccEEEEecCCCCCC---CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCcc
Q psy2519 91 VNGKPVEG------KFRSACGFMYQHDLFSP---SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 161 (622)
Q Consensus 91 ~~G~~~~~------~~r~~igyV~Q~~~l~~---~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 161 (622)
++|.++.. ..+..+++++|...+.+ ..||.|++... . ..++++++++.+||.+..++.+
T Consensus 159 ~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~--------~~~~~~~~L~~lgL~~~~~~~~ 226 (607)
T 3bk7_A 159 FRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----D--------EVGKFEEVVKELELENVLDREL 226 (607)
T ss_dssp TTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----C--------CSSCHHHHHHHTTCTTGGGSBG
T ss_pred eCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh----H--------HHHHHHHHHHHcCCCchhCCCh
Confidence 56766532 12346889998643322 23999998531 1 0134678999999999999987
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++.++|+++++ .|.|||++|||+ +.+..+||
T Consensus 227 ~~--------LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl-~~~~~~ad 296 (607)
T 3bk7_A 227 HQ--------LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDL-AVLDYLSD 296 (607)
T ss_dssp GG--------CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCS
T ss_pred hh--------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecCh-HHHHhhCC
Confidence 77 999999999999999999999999999999999999999999999987 699999999995 68888999
Q ss_pred ceeeecCCc
Q psy2519 242 KIILLADSR 250 (622)
Q Consensus 242 ~v~~L~~G~ 250 (622)
||++|+++.
T Consensus 297 ri~vl~~~~ 305 (607)
T 3bk7_A 297 VIHVVYGEP 305 (607)
T ss_dssp EEEEEESCT
T ss_pred EEEEECCCc
Confidence 999998654
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.98 E-value=3.2e-33 Score=312.45 Aligned_cols=196 Identities=22% Similarity=0.194 Sum_probs=158.6
Q ss_pred Cccc-CCccccccccce-eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE-----
Q psy2519 17 NEEV-PNVDFSEIVGSV-QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI----- 89 (622)
Q Consensus 17 ~~~~-~~~~~~~~~g~~-~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I----- 89 (622)
..++ +||+|+| |+. .+++++| ++ .+|+.+.++|+| |||||||||+|+|+++|+ +|++
T Consensus 20 ~~~~~~~ls~~y--g~~~~~l~~vs-~i-----~~Ge~~~LvG~N-----GaGKSTLlk~l~Gl~~p~---~G~~~~~~~ 83 (538)
T 1yqt_A 20 MEQLEEDCVHRY--GVNAFVLYRLP-VV-----KEGMVVGIVGPN-----GTGKSTAVKILAGQLIPN---LCGDNDSWD 83 (538)
T ss_dssp ----CCCEEEEC--STTCCEEECCC-CC-----CTTSEEEEECCT-----TSSHHHHHHHHHTSSCCC---TTTTCCSHH
T ss_pred ChhHhcCcEEEE--CCccccccCcC-cC-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCCC---CCccCcchh
Confidence 3566 6999997 554 5888888 77 678888888887 899999999999999984 7875
Q ss_pred ----EECCEecCc------cccccEEEEecCCCCCCC---CCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc
Q psy2519 90 ----RVNGKPVEG------KFRSACGFMYQHDLFSPS---LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS 156 (622)
Q Consensus 90 ----~~~G~~~~~------~~r~~igyV~Q~~~l~~~---lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~ 156 (622)
.++|.++.. ..+..+++++|+..+.+. .||.|++... . ..++++++++.+||.+.
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---~---------~~~~~~~~l~~lgl~~~ 151 (538)
T 1yqt_A 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---D---------ETGKLEEVVKALELENV 151 (538)
T ss_dssp HHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---C---------SSSCHHHHHHHTTCTTT
T ss_pred hhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---h---------HHHHHHHHHHHcCCChh
Confidence 457765532 123468999997544332 3899987531 0 11346789999999988
Q ss_pred cCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 157 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 157 ~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
.++++++ |||||||||+||+||+.+|++|||||||++||+.++.++.++|+++++ .|.|||++|||+ +++
T Consensus 152 ~~~~~~~--------LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~-~~~ 221 (538)
T 1yqt_A 152 LEREIQH--------LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDL-AVL 221 (538)
T ss_dssp TTSBGGG--------CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHH
T ss_pred hhCChhh--------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHH
Confidence 8988777 999999999999999999999999999999999999999999999987 699999999995 688
Q ss_pred HhhccceeeecCCc
Q psy2519 237 IDMFDKIILLADSR 250 (622)
Q Consensus 237 ~~~~D~v~~L~~G~ 250 (622)
.++||||++|++|.
T Consensus 222 ~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 222 DYLSDIIHVVYGEP 235 (538)
T ss_dssp HHHCSEEEEEEEET
T ss_pred HHhCCEEEEEcCcc
Confidence 89999999998654
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=7e-32 Score=315.06 Aligned_cols=197 Identities=20% Similarity=0.239 Sum_probs=162.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
+...|++++| |+..+|+++|+++ .+|+.+.++|+| |||||||||+|+| |+| +|.+..
T Consensus 436 L~~~~ls~~y--g~~~iL~~vsl~I-----~~Ge~v~LiGpN-----GsGKSTLLk~Lag---------G~i--~g~~~~ 492 (986)
T 2iw3_A 436 LCNCEFSLAY--GAKILLNKTQLRL-----KRARRYGICGPN-----GCGKSTLMRAIAN---------GQV--DGFPTQ 492 (986)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHHH---------TCS--TTCCCT
T ss_pred eEEeeEEEEE--CCEEeEecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhC---------CCc--CCCccc
Confidence 3344666664 7888999999999 677788888887 8999999999995 222 444432
Q ss_pred ccccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCccccChH
Q psy2519 98 GKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gLSgG 175 (622)
.. .+++|++|+. .+++.+||.|++.+ ... .. +++++++++.+||. +..++++++ ||||
T Consensus 493 ~~--~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~~--------LSGG 552 (986)
T 2iw3_A 493 EE--CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPISA--------LSGG 552 (986)
T ss_dssp TT--SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGGG--------CCHH
T ss_pred cc--eeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCccc--------CCHH
Confidence 22 2478999974 78899999999976 211 11 45678999999995 677888777 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE-Ee
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FI 254 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv-~~ 254 (622)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|||+ .++.++||++++|++|+++ +.
T Consensus 553 qkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~ 627 (986)
T 2iw3_A 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYK 627 (986)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCC
Confidence 99999999999999999999999999999999999999987 489999999995 7888999999999999997 68
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++++..
T Consensus 628 G~~~e~~~ 635 (986)
T 2iw3_A 628 GNFTEFVK 635 (986)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHh
Confidence 99987754
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=6.6e-32 Score=315.29 Aligned_cols=207 Identities=21% Similarity=0.263 Sum_probs=161.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|+|..++.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.++|.
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I-----~~GeivaIiGpN-----GSGKSTLLklLaGll~P---~sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQC-----SLSSRIAVIGPN-----GAGKSTLINVLTGELLP---TSGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEE-----ETTCEEEECSCC-----CHHHHHHHHHHTTSSCC---SEEEEEECTT--
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEEcCc--
Confidence 47899999997422367899999999 577788888777 89999999999999999 5999999863
Q ss_pred CccccccEEEEecCCCC----CCCCCHHHHHHHHHHcCC------------C----------------------------
Q psy2519 97 EGKFRSACGFMYQHDLF----SPSLTVYEHLYFMALLKL------------D---------------------------- 132 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l----~~~lTV~E~l~f~~~l~~------------~---------------------------- 132 (622)
..+||++|+... ....|+.|++.+...... .
T Consensus 736 -----~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~ 810 (986)
T 2iw3_A 736 -----CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRK 810 (986)
T ss_dssp -----CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEE
T ss_pred -----cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhh
Confidence 258999997521 234688888765321000 0
Q ss_pred ------------------------cc--------ccH--------------------------HHHHHHHHHHHHHhCCC
Q psy2519 133 ------------------------RR--------VKA--------------------------YQRIALINSLLIELGLM 154 (622)
Q Consensus 133 ------------------------~~--------~~~--------------------------~~~~~~v~~~l~~lgL~ 154 (622)
.. ... ....++++++++.+||.
T Consensus 811 ~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~ 890 (986)
T 2iw3_A 811 FKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLD 890 (986)
T ss_dssp ETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCC
T ss_pred hcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCC
Confidence 00 000 00135678999999997
Q ss_pred cc--cCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 155 NS--QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 155 ~~--~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+. .++++++ |||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++|||+
T Consensus 891 ~~~~~~~~~~~--------LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~ 958 (986)
T 2iw3_A 891 PEIVSHSRIRG--------LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSA 958 (986)
T ss_dssp HHHHHHSCGGG--------CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCH
T ss_pred chhhcCCCccc--------cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCH
Confidence 53 5777666 9999999999999999999999999999999999999999888654 56999999995
Q ss_pred cHHHHhhccceeeecCCceEEecC
Q psy2519 233 SSELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 233 ~~~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
+.+.++||++++|++|+++..|+
T Consensus 959 -e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 959 -EFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp -HHHTTTCCEEECCBTTBCCC---
T ss_pred -HHHHHhCCEEEEEECCEEEEeCC
Confidence 67888999999999999998774
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=9.6e-31 Score=300.63 Aligned_cols=197 Identities=24% Similarity=0.281 Sum_probs=149.6
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHh----------------------CCCCCCCceeeE
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFL----------------------SQVIDDCIIDGD 88 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~----------------------g~~~~~~~~~G~ 88 (622)
+.++|+++|+++ .+|+.++++|+| |||||||+++|. |+..+ +|.
T Consensus 334 ~~~~L~~vsl~I-----~~Ge~vaIiGpn-----GsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~ 399 (670)
T 3ux8_A 334 REHNLKNVSVKI-----PLGTFVAVTGVS-----GSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKV 399 (670)
T ss_dssp CSTTCCSEEEEE-----ETTSEEEEECST-----TSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEE
T ss_pred cccccccceeEe-----cCCCEEEEEeeC-----CCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----Cce
Confidence 346799999999 677788888776 899999998754 33322 578
Q ss_pred EEECCEecCccc---------------------------------------------cccEEEEecCCCCCC--------
Q psy2519 89 IRVNGKPVEGKF---------------------------------------------RSACGFMYQHDLFSP-------- 115 (622)
Q Consensus 89 I~~~G~~~~~~~---------------------------------------------r~~igyV~Q~~~l~~-------- 115 (622)
|.++|.++.... .+..|+++|+..++|
T Consensus 400 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~ 479 (670)
T 3ux8_A 400 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 479 (670)
T ss_dssp EECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTT
T ss_pred eEeccccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeeccccccccccccc
Confidence 888888763200 012344555433333
Q ss_pred ------------------------CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCcc
Q psy2519 116 ------------------------SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKV 170 (622)
Q Consensus 116 ------------------------~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~ 170 (622)
.+||+||+.+.... . ..+++.+.++.++|.+ ..++++++
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~~~~~------- 543 (670)
T 3ux8_A 480 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI------P---KIKRKLETLYDVGLGYMKLGQPATT------- 543 (670)
T ss_dssp TTTCCBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTC------H---HHHHHHHHHHHTTCTTSBTTCCGGG-------
T ss_pred ccCcccChhhhheeecCCCHHHHhhCCHHHHHHHHHHh------h---hHHHHHHHHHHcCCchhhccCCchh-------
Confidence 57999999885321 1 1234567888999964 45777666
Q ss_pred ccChHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee-
Q psy2519 171 VLSGGERKRLSFATELLTDP---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL- 246 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P---~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L- 246 (622)
|||||||||+|||||+.+| ++|||||||+|||+.++.+++++|+++++ +|+|||+||||+ +.+ +.||||++|
T Consensus 544 -LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi~vtHd~-~~~-~~~d~i~~l~ 619 (670)
T 3ux8_A 544 -LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNL-DVI-KTADYIIDLG 619 (670)
T ss_dssp -CCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEEE
T ss_pred -CCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHH-HhCCEEEEec
Confidence 9999999999999999987 59999999999999999999999999987 699999999996 454 679999999
Q ss_pred -----cCCceEEecChHHHH
Q psy2519 247 -----ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 -----~~G~iv~~G~~~~~~ 261 (622)
++|++++.|+++++.
T Consensus 620 ~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 620 PEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp SSSGGGCCEEEEEECHHHHH
T ss_pred CCcCCCCCEEEEecCHHHHH
Confidence 899999999999874
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.8e-30 Score=288.75 Aligned_cols=199 Identities=17% Similarity=0.169 Sum_probs=147.5
Q ss_pred CCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE-----------
Q psy2519 21 PNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI----------- 89 (622)
Q Consensus 21 ~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I----------- 89 (622)
+|++++|..+ ...+++++ .+ .+|+.+.++|+| |||||||||+|+|+++|+ +|+|
T Consensus 81 ~~~~~~Y~~~-~~~l~~l~-~~-----~~Gei~~LvGpN-----GaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~ 145 (608)
T 3j16_B 81 AHVTHRYSAN-SFKLHRLP-TP-----RPGQVLGLVGTN-----GIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIK 145 (608)
T ss_dssp TTEEEECSTT-SCEEECCC-CC-----CTTSEEEEECCT-----TSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHH
T ss_pred CCeEEEECCC-ceeecCCC-CC-----CCCCEEEEECCC-----CChHHHHHHHHhcCCCCC---CceEecccchhhhhh
Confidence 4677776322 23455544 23 577888888887 899999999999999994 7887
Q ss_pred EECCEecCc----cccccE--EEEecCCCC------CCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc
Q psy2519 90 RVNGKPVEG----KFRSAC--GFMYQHDLF------SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ 157 (622)
Q Consensus 90 ~~~G~~~~~----~~r~~i--gyV~Q~~~l------~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 157 (622)
.+.|.++.. ...+.+ .+.+|.... -+..++.+++.... . +..++++++++.+||.+..
T Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~--------~~~~~~~~~l~~~gl~~~~ 215 (608)
T 3j16_B 146 YFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM--E--------KSPEDVKRYIKILQLENVL 215 (608)
T ss_dssp HTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC--C--------SCHHHHHHHHHHHTCTGGG
T ss_pred eecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh--h--------hHHHHHHHHHHHcCCcchh
Confidence 334443321 011122 233332111 12235555544321 0 1124678999999999999
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++.+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.++|+++++ .|+|||++||++ +++.
T Consensus 216 ~~~~~~--------LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl-~~~~ 285 (608)
T 3j16_B 216 KRDIEK--------LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDL-SVLD 285 (608)
T ss_dssp GSCTTT--------CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCH-HHHH
T ss_pred CCChHH--------CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHH
Confidence 999877 999999999999999999999999999999999999999999999987 699999999995 7899
Q ss_pred hhccceeeecCCceEEe
Q psy2519 238 DMFDKIILLADSRTAFI 254 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~ 254 (622)
.++|||++|++|..++.
T Consensus 286 ~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 286 YLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp HHCSEEEEEESCTTTEE
T ss_pred HhCCEEEEEeCCccccc
Confidence 99999999998776553
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=7.7e-30 Score=284.55 Aligned_cols=174 Identities=23% Similarity=0.256 Sum_probs=138.3
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE-----------EECCEecCc------cccccEEEEecC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI-----------RVNGKPVEG------KFRSACGFMYQH 110 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I-----------~~~G~~~~~------~~r~~igyV~Q~ 110 (622)
++|+.+.++|+| |||||||||+|+|+++|+ +|+| .++|+++.. .....+..+.|.
T Consensus 23 ~~Gei~gLiGpN-----GaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 94 (538)
T 3ozx_A 23 KNNTILGVLGKN-----GVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQY 94 (538)
T ss_dssp CTTEEEEEECCT-----TSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSC
T ss_pred CCCCEEEEECCC-----CCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccch
Confidence 466777788777 899999999999999994 7988 677776532 011233444443
Q ss_pred ----CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHH
Q psy2519 111 ----DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186 (622)
Q Consensus 111 ----~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL 186 (622)
+.++ ..||+|++... . .+++++++++.+|+.+..++.+++ |||||||||+||+||
T Consensus 95 ~~~~~~~~-~~~v~~~l~~~---~---------~~~~~~~~l~~l~l~~~~~~~~~~--------LSgGe~Qrv~iA~aL 153 (538)
T 3ozx_A 95 VEYASKFL-KGTVNEILTKI---D---------ERGKKDEVKELLNMTNLWNKDANI--------LSGGGLQRLLVAASL 153 (538)
T ss_dssp TTGGGTTC-CSBHHHHHHHH---C---------CSSCHHHHHHHTTCGGGTTSBGGG--------CCHHHHHHHHHHHHH
T ss_pred hhhhhhhc-cCcHHHHhhcc---h---------hHHHHHHHHHHcCCchhhcCChhh--------CCHHHHHHHHHHHHH
Confidence 2233 34788765321 0 122466899999999999999877 999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 187 ~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
+.+|++|||||||++||+.++.++.++|+++++ |+|||++||++ +++..+||+|++|++|..++
T Consensus 154 ~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 154 LREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDL-IVLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSEEEEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCEEEEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence 999999999999999999999999999999963 89999999996 78999999999998765443
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=1.5e-28 Score=284.83 Aligned_cols=198 Identities=24% Similarity=0.298 Sum_probs=152.1
Q ss_pred eeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHh-CCC---------CCCC--ceee------EEEECCEe
Q psy2519 34 VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFL-SQV---------IDDC--IIDG------DIRVNGKP 95 (622)
Q Consensus 34 ~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~-g~~---------~~~~--~~~G------~I~~~G~~ 95 (622)
+|+++|+++ ..|+.++++|+| |||||||++.|. |.+ .++. ...| .|.++|.+
T Consensus 639 ~Lk~Vsl~I-----~~Geiv~I~G~n-----GSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~p 708 (972)
T 2r6f_A 639 NLKNVSVKI-----PLGTFVAVTGVS-----GSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSP 708 (972)
T ss_dssp SCCSEEEEE-----ESSSEEECCBCT-----TSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSC
T ss_pred ccccceEEE-----cCCCEEEEEcCC-----CCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcc
Confidence 589999999 566677777666 899999999853 211 2221 1234 58899988
Q ss_pred cCccc-----------------------cccEEEEecCCCCC----------------------C---------------
Q psy2519 96 VEGKF-----------------------RSACGFMYQHDLFS----------------------P--------------- 115 (622)
Q Consensus 96 ~~~~~-----------------------r~~igyV~Q~~~l~----------------------~--------------- 115 (622)
+.... .+.+||++|...+. +
T Consensus 709 ig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~ 788 (972)
T 2r6f_A 709 IGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYN 788 (972)
T ss_dssp SCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBC
T ss_pred cccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccccccccc
Confidence 73210 13457777753321 1
Q ss_pred -----------------CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHH
Q psy2519 116 -----------------SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 116 -----------------~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqr 177 (622)
.+||.|++.|.... .. .+++.++++.+||.. ..++.+.+ ||||||
T Consensus 789 ~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~------~~---~~~~~~~L~~~gL~~~~l~~~~~~--------LSGGek 851 (972)
T 2r6f_A 789 RETLEVTYKGKNIAEVLDMTVEDALDFFASI------PK---IKRKLETLYDVGLGYMKLGQPATT--------LSGGEA 851 (972)
T ss_dssp TTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC------HH---HHHHHHHHHHTTCSSSBTTCCGGG--------CCHHHH
T ss_pred chhhhhhccCCCHHHhhhcCHHHHHHHHhcc------hh---HHHHHHHHHHcCCCcccccCchhh--------CCHHHH
Confidence 46888888764311 11 234568999999987 67788776 999999
Q ss_pred HHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cC
Q psy2519 178 KRLSFATELLTDP---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------AD 248 (622)
Q Consensus 178 qRvsIA~aL~~~P---~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~ 248 (622)
|||+||++|+.+| ++|||||||+|||+.++.++++.|+++++ .|.|||++|||+ +++ +.||+|++| ++
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl-~~i-~~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHH-HhCCEEEEEcCCCCCCC
Confidence 9999999999865 99999999999999999999999999987 699999999996 455 689999999 78
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|++++.|+++++.
T Consensus 929 G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 929 GQIVAVGTPEEVA 941 (972)
T ss_dssp CSEEEEESHHHHH
T ss_pred CEEEEecCHHHHH
Confidence 9999999999775
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=4e-28 Score=283.22 Aligned_cols=200 Identities=24% Similarity=0.295 Sum_probs=152.5
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHH---------HHHhCCCCCCC---cee------eEEEECC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELI---------RLFLSQVIDDC---IID------GDIRVNG 93 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl---------~~l~g~~~~~~---~~~------G~I~~~G 93 (622)
.+.|+++|+++ ..|+.++++|+| |||||||+ +.+.+...+.. ..+ +.+.+++
T Consensus 597 ~~~Lk~Vsl~I-----~~Geiv~I~G~S-----GSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq 666 (916)
T 3pih_A 597 HNNLKNIDVEI-----PLGVFVCVTGVS-----GSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQ 666 (916)
T ss_dssp STTCCSEEEEE-----ESSSEEEEECST-----TSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECS
T ss_pred cccccccceEE-----cCCcEEEEEccC-----CCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecc
Confidence 45689999999 567777777776 89999997 45555433210 022 3466666
Q ss_pred EecCcc---------------------------------------------ccccEEEEecCCCCCCC------------
Q psy2519 94 KPVEGK---------------------------------------------FRSACGFMYQHDLFSPS------------ 116 (622)
Q Consensus 94 ~~~~~~---------------------------------------------~r~~igyV~Q~~~l~~~------------ 116 (622)
.++... ..+..|++.|+..++|.
T Consensus 667 ~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r 746 (916)
T 3pih_A 667 SPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKR 746 (916)
T ss_dssp CCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSC
T ss_pred ccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccc
Confidence 554210 01345888887766653
Q ss_pred --------------------CCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChH
Q psy2519 117 --------------------LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 117 --------------------lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgG 175 (622)
+||.|++.|.... + ..+++.++|+.+||... .++.+.+ ||||
T Consensus 747 ~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~------~---~~~~~~~~L~~vGL~~~~lgq~~~~--------LSGG 809 (916)
T 3pih_A 747 YNRETLEITYKGKNISDILDMTVDEALEFFKNI------P---SIKRTLQVLHDVGLGYVKLGQPATT--------LSGG 809 (916)
T ss_dssp BCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTC------H---HHHHHHHHHHHTTGGGSBTTCCSTT--------CCHH
T ss_pred cchhhhhhhhccCCHHHHhhCCHHHHHHHHhcc------h---hHHHHHHHHHHcCCchhhccCCccC--------CCHH
Confidence 7888888875321 1 23456789999999653 4566555 9999
Q ss_pred HHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------
Q psy2519 176 ERKRLSFATELLTDP---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ 246 (622)
Q Consensus 176 qrqRvsIA~aL~~~P---~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------ 246 (622)
|||||+|||||+.+| ++|||||||+|||+.+..++++.|+++++ .|.|||+|+||+ +.+ +.||+|++|
T Consensus 810 ErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~ 886 (916)
T 3pih_A 810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNL-DVI-KNADHIIDLGPEGGK 886 (916)
T ss_dssp HHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEEESSSGG
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHH-HhCCEEEEecCCCCC
Confidence 999999999999875 79999999999999999999999999987 699999999996 455 569999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|+++++.
T Consensus 887 ~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 887 EGGYIVATGTPEEIA 901 (916)
T ss_dssp GCCEEEEEESHHHHH
T ss_pred CCCEEEEEcCHHHHH
Confidence 899999999999886
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.95 E-value=3e-28 Score=282.10 Aligned_cols=109 Identities=28% Similarity=0.330 Sum_probs=98.9
Q ss_pred HHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2519 142 ALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD---PALLLCDEPTTGLDSFSASKLIRMMREL 217 (622)
Q Consensus 142 ~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~---P~lLlLDEPTsgLD~~~~~~i~~~l~~l 217 (622)
+++.++++.+||.. ..++.+.+ |||||||||+||++|+.+ |++|||||||+|||+.+..++.++|+++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~--------LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 779 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATE--------LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL 779 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGG--------CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCCccc--------CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 46789999999987 35777666 999999999999999996 7999999999999999999999999999
Q ss_pred HhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHH
Q psy2519 218 TSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 261 (622)
Q Consensus 218 ~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 261 (622)
++ .|.|||++|||+ +++ +.||+|++| ++|++++.|+++++.
T Consensus 780 ~~-~G~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 780 VD-AGNTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp HH-TTCEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred Hh-CCCEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 87 699999999996 566 789999999 799999999999764
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.4e-31 Score=286.87 Aligned_cols=198 Identities=12% Similarity=0.061 Sum_probs=155.3
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee-E-EEEC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG-D-IRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G-~-I~~~ 92 (622)
..+++++||+|.| + ++++++ ++|+.+.++|+| |||||||+|+|+|+..| .+| + |.++
T Consensus 116 ~~mi~~~nl~~~y--~------~vsl~i-----~~Ge~v~IvGpn-----GsGKSTLlr~L~Gl~~p---~~G~~pI~vd 174 (460)
T 2npi_A 116 HTMKYIYNLHFML--E------KIRMSN-----FEGPRVVIVGGS-----QTGKTSLSRTLCSYALK---FNAYQPLYIN 174 (460)
T ss_dssp CTHHHHHHHHHHH--H------HHHHHS-----SSCCCEEEEEST-----TSSHHHHHHHHHHTTHH---HHCCCCEEEE
T ss_pred cchhhhhhhhehh--h------cCceEe-----CCCCEEEEECCC-----CCCHHHHHHHHhCcccc---cCCceeEEEc
Confidence 3467889999986 3 577777 578888888887 79999999999999988 589 8 9999
Q ss_pred CEecCccccccEEEEecCCC---CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 93 GKPVEGKFRSACGFMYQHDL---FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~~---l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
|. .++.++||||+.. +.+.+||+||+ |+....... . ..+++.++++.+|+.+..+ ..+
T Consensus 175 g~-----~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~--~~~------ 235 (460)
T 2npi_A 175 LD-----PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE--NKD------ 235 (460)
T ss_dssp CC-----TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG--CHH------
T ss_pred CC-----ccCCeeeeccchhhcccccccchhhhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc--hhh------
Confidence 83 3678999999874 45668999998 654321110 0 1123456778888877655 444
Q ss_pred cccChHHHHHHHHHHH--HhhCCCe----EEEeC-CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH-----HHH
Q psy2519 170 VVLSGGERKRLSFATE--LLTDPAL----LLCDE-PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS-----ELI 237 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~a--L~~~P~l----LlLDE-PTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~-----~i~ 237 (622)
|||||||||+|||+ |+.+|++ ||||| ||++||+. ...+.+++ ++.|+|+|+++|+..+ ++.
T Consensus 236 --LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~----~~~~~tviiVth~~~~~l~~~~~~ 308 (460)
T 2npi_A 236 --LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHII----EKLNVNIMLVLCSETDPLWEKVKK 308 (460)
T ss_dssp --HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH----HHTTCCEEEEECCSSCTHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHH----HHhCCCEEEEEccCchhhhHHHHH
Confidence 99999999999999 9999999 99999 99999999 44444443 3357899999999631 666
Q ss_pred hhccc-----eeeec-CCceEEecChHHH
Q psy2519 238 DMFDK-----IILLA-DSRTAFIGSKDAA 260 (622)
Q Consensus 238 ~~~D~-----v~~L~-~G~iv~~G~~~~~ 260 (622)
+++|| |++|+ +|+++ .|+++++
T Consensus 309 ~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 309 TFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred HhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 89999 99999 99999 9998765
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=5.4e-28 Score=281.20 Aligned_cols=126 Identities=25% Similarity=0.358 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCC---C
Q psy2519 116 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP---A 191 (622)
Q Consensus 116 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P---~ 191 (622)
.+||.|++.|.... +. .+++.++++.+||.. ..++.+.+ |||||||||+||++|+.+| +
T Consensus 824 ~ltv~e~l~~~~~~------~~---~~~~~~~L~~lgL~~~~l~~~~~~--------LSGGekQRv~LAraL~~~p~~p~ 886 (993)
T 2ygr_A 824 DMSIEEAAEFFEPI------AG---VHRYLRTLVDVGLGYVRLGQPAPT--------LSGGEAQRVKLASELQKRSTGRT 886 (993)
T ss_dssp SSBHHHHHHHSTTC------HH---HHHHHHHHHHTTGGGSBTTCCGGG--------SCHHHHHHHHHHHHHSSCCCSSE
T ss_pred hccHHHHHHHhhcc------hH---HHHHHHHHHHcCCCcccccCcccc--------CCHHHHHHHHHHHHHHhCCCCCC
Confidence 36788887764321 11 233568999999976 66777766 9999999999999999865 9
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHH
Q psy2519 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 261 (622)
Q Consensus 192 lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 261 (622)
+|||||||+|||+.++.++.+.|+++++ .|.|||++|||+ +++ +.||+|++| ++|++++.|+++++.
T Consensus 887 lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl-~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 887 VYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIVIEHNL-DVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHH
Confidence 9999999999999999999999999987 699999999996 455 789999999 789999999999875
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.93 E-value=1e-25 Score=244.09 Aligned_cols=208 Identities=15% Similarity=0.143 Sum_probs=144.9
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-----------------------------
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD----------------------------- 82 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~----------------------------- 82 (622)
..+++++++++ .+| ..+++|+| ||||||||++|.++..+.
T Consensus 48 f~~l~~v~l~~-----~~G-~~~lvG~N-----GaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~ 116 (415)
T 4aby_A 48 LATITQLELEL-----GGG-FCAFTGET-----GAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADS 116 (415)
T ss_dssp ETTEEEEEEEC-----CSS-EEEEEESH-----HHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CE
T ss_pred ccceeeEEEec-----CCC-cEEEECCC-----CCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEE
Confidence 35688999888 455 88888887 799999999997776420
Q ss_pred ------CceeeEEEECCEecCc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-------------------
Q psy2519 83 ------CIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD------------------- 132 (622)
Q Consensus 83 ------~~~~G~I~~~G~~~~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~------------------- 132 (622)
...+|++.+||++++. + .+..+++++|++.++.. +..+...|.-.....
T Consensus 117 l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~ 195 (415)
T 4aby_A 117 ASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRL 195 (415)
T ss_dssp EEEEEETTSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 0126899999999874 2 34458999998765543 555554442211100
Q ss_pred ----c----------------------------------cccHHHHHHHHHHHHHHhCCCcccC----------------
Q psy2519 133 ----R----------------------------------RVKAYQRIALINSLLIELGLMNSQH---------------- 158 (622)
Q Consensus 133 ----~----------------------------------~~~~~~~~~~v~~~l~~lgL~~~~~---------------- 158 (622)
. ........+.+.+.++.+++.+..-
T Consensus 196 ~~l~~~~~~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~ 275 (415)
T 4aby_A 196 ERLQASESSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLS 275 (415)
T ss_dssp HHC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEE
T ss_pred HHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCc
Confidence 0 0000011234555666676643100
Q ss_pred C---ccCCc---CCCCccc-cChHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Q psy2519 159 T---RIGSS---SITQKVV-LSGGERKRLSFATELLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229 (622)
Q Consensus 159 ~---~v~~~---~~~~~~g-LSgGqrqRvsIA~aL~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~t 229 (622)
+ .+... .+..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ .|.|||+||
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~it 353 (415)
T 4aby_A 276 DVLLRFSANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVT 353 (415)
T ss_dssp EEEEEEESSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEEC
T ss_pred eEEEEEEcCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEe
Confidence 0 00000 0011122 5999999999999999999 9999999999999999999999999997 389999999
Q ss_pred ccCcHHHHhhccceeee----cCCceEEec
Q psy2519 230 HQPSSELIDMFDKIILL----ADSRTAFIG 255 (622)
Q Consensus 230 H~~~~~i~~~~D~v~~L----~~G~iv~~G 255 (622)
|++ ++.+.||++++| ++|+++...
T Consensus 354 H~~--~~~~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 354 HLA--QIAARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SCH--HHHTTCSEEEEEEEEEETTEEEEEE
T ss_pred CcH--HHHhhcCeEEEEEEeccCCceEEEE
Confidence 996 456889999999 999987653
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=1.3e-23 Score=224.07 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=73.8
Q ss_pred cChHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 172 LSGGERKRLSFATELL------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++++ .|.|||++||++ +. .+.+|++++
T Consensus 280 LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~-~~-~~~~d~~~~ 356 (365)
T 3qf7_A 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDR-EF-SEAFDRKLR 356 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCH-HH-HTTCSCEEE
T ss_pred CCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecch-HH-HHhCCEEEE
Confidence 9999999999999999 69999999999999999999999999999986 699999999996 34 688999999
Q ss_pred ecCCceEE
Q psy2519 246 LADSRTAF 253 (622)
Q Consensus 246 L~~G~iv~ 253 (622)
|++|+++.
T Consensus 357 l~~G~i~~ 364 (365)
T 3qf7_A 357 ITGGVVVN 364 (365)
T ss_dssp EETTEEC-
T ss_pred EECCEEEe
Confidence 99999875
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=7.9e-23 Score=214.50 Aligned_cols=85 Identities=18% Similarity=0.350 Sum_probs=71.5
Q ss_pred cChHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce--ee
Q psy2519 172 LSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI--IL 245 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v--~~ 245 (622)
||||||||++||++|+ .+|++|||||||++||+..+..+.+.|++++ .|.|||++||++ ++.+.||++ ++
T Consensus 220 lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~~d~~~~v~ 295 (322)
T 1e69_A 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEAADLLHGVT 295 (322)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGGCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhhCceEEEEE
Confidence 9999999999999998 5789999999999999999999999999984 479999999995 567889987 78
Q ss_pred ecCCce-EEecChHHH
Q psy2519 246 LADSRT-AFIGSKDAA 260 (622)
Q Consensus 246 L~~G~i-v~~G~~~~~ 260 (622)
|.+|+. +.....++.
T Consensus 296 ~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 296 MVNGVSAIVPVEVEKI 311 (322)
T ss_dssp ESSSCEEEEECCC---
T ss_pred EeCCEEEEEEEEcchh
Confidence 887754 444555543
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=6.2e-26 Score=223.25 Aligned_cols=140 Identities=13% Similarity=0.100 Sum_probs=99.4
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC---ccccccEEE
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE---GKFRSACGF 106 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~---~~~r~~igy 106 (622)
|+.++|+++ .+|+.+.++|+| ||||||||++|+|+ +| .+|+|. +.++. ...++.+||
T Consensus 11 g~~~~l~~i---------~~Ge~~~liG~n-----GsGKSTLl~~l~Gl-~p---~~G~I~--~~~~~~~~~~~~~~ig~ 70 (208)
T 3b85_A 11 GQKHYVDAI---------DTNTIVFGLGPA-----GSGKTYLAMAKAVQ-AL---QSKQVS--RIILTRPAVEAGEKLGF 70 (208)
T ss_dssp HHHHHHHHH---------HHCSEEEEECCT-----TSSTTHHHHHHHHH-HH---HTTSCS--EEEEEECSCCTTCCCCS
T ss_pred hHHHHHHhc---------cCCCEEEEECCC-----CCCHHHHHHHHhcC-CC---cCCeee--eEEecCCchhhhcceEE
Confidence 666778875 367788888777 89999999999999 87 478883 22222 135778999
Q ss_pred EecCCCCCCCCCHHHHH-HHHH----HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHH
Q psy2519 107 MYQHDLFSPSLTVYEHL-YFMA----LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLS 181 (622)
Q Consensus 107 V~Q~~~l~~~lTV~E~l-~f~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvs 181 (622)
|+|++ +||+ .+.. ..... .. .++++++++. | + ||||||+
T Consensus 71 v~q~~--------~enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-g-------------------l--Gq~qrv~ 114 (208)
T 3b85_A 71 LPGTL--------NEKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-G-------------------I--VEVAPLA 114 (208)
T ss_dssp SCC--------------CTTTHHHHHHHTTT--SC----TTHHHHHHHT-T-------------------S--EEEEEGG
T ss_pred ecCCH--------HHHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-C-------------------C--chHHHHH
Confidence 99975 4555 2311 11100 00 1234444442 1 5 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 182 FATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 182 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
|||||+.+|++|||||||+| ++.++.+.|+++ + .|+||| +|||+
T Consensus 115 lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~ 158 (208)
T 3b85_A 115 YMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDI 158 (208)
T ss_dssp GGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC-
T ss_pred HHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCH
Confidence 99999999999999999999 899999999998 5 689999 99996
No 69
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.85 E-value=2.7e-25 Score=218.31 Aligned_cols=183 Identities=10% Similarity=-0.020 Sum_probs=124.9
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEec
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQ 109 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q 109 (622)
+..+++.| .++ .+|+.++++|+| |||||||+|+|+|+.+. ..+.+.+.+.+.....++.++|+||
T Consensus 7 ~~~~~~~~--~~i-----~~Gei~~l~Gpn-----GsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q 71 (207)
T 1znw_A 7 DTKPTARG--QPA-----AVGRVVVLSGPS-----AVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFI 71 (207)
T ss_dssp -------------------CCCEEEEECST-----TSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEEC
T ss_pred CCCcCCCC--CCC-----CCCCEEEEECCC-----CCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEec
Confidence 34566776 455 567777888776 89999999999999853 3333333333222224577999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCC---CccccHHHHHHHHHHH------HHHhCCCcccCCccCCcCCCCccccChHHHHHH
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKL---DRRVKAYQRIALINSL------LIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRv 180 (622)
++.+++.+|+.|++........ ....++.+.++++++. ++.+|+.+.+++.+.. ||
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------lS------- 136 (207)
T 1znw_A 72 DPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA--------VT------- 136 (207)
T ss_dssp CHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTS--------EE-------
T ss_pred CHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCc--------EE-------
Confidence 9888888888887643211100 0122344455566665 6666766666666444 77
Q ss_pred HHHHHHhhCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 181 SFATELLTDPALLLCDEPTTGL----DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgL----D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+|+.+|++++|||||+|+ |+..+.++.+.+++++++.|.|+|++|||+ +++.++||||++|.
T Consensus 137 ----~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 ----VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp ----EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred ----EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 899999999999999998 788999999999999875799999999996 78999999999985
No 70
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=4.9e-22 Score=232.05 Aligned_cols=164 Identities=25% Similarity=0.353 Sum_probs=129.7
Q ss_pred HHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCcc--c---cHHHHHHH
Q psy2519 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR--V---KAYQRIAL 143 (622)
Q Consensus 69 STLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~--~---~~~~~~~~ 143 (622)
+|...|..++++| ..|+|.++|+++.. +..+||.|++.|...+..... . ...+..++
T Consensus 382 ~~C~~C~g~rl~~---~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (916)
T 3pih_A 382 RTCSVCGGRRLNR---EALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEK 443 (916)
T ss_dssp EECTTTCSCCBCT---TGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHH
T ss_pred ccchhcccccCCh---HhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHH
Confidence 3456777788888 48999999998742 334678888877544332110 0 00111223
Q ss_pred HHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q psy2519 144 INSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLLCDEPTTGLDSFSASKLIRMMRELTSQ 220 (622)
Q Consensus 144 v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~--lLlLDEPTsgLD~~~~~~i~~~l~~l~~~ 220 (622)
..+.+..+||.+. .++.+++ |||||||||+||++|+.+|+ +|||||||+|||+..+.+++++|+++++
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~--------LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~- 514 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATT--------LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD- 514 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGG--------CCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-
T ss_pred HHHHHHHcCCccccccCCccc--------CCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-
Confidence 4567888999764 6788777 99999999999999999887 9999999999999999999999999987
Q ss_pred CCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHH
Q psy2519 221 RKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 261 (622)
Q Consensus 221 ~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 261 (622)
.|.|||+|+||+ +.+ ..||+|++| ++|++++.|+++++.
T Consensus 515 ~G~TvivVtHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 515 LGNTVIVVEHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp TTCEEEEECCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred cCCEEEEEeCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 699999999996 455 569999999 899999999999875
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.85 E-value=1.4e-22 Score=194.44 Aligned_cols=146 Identities=10% Similarity=0.025 Sum_probs=100.1
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 131 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~ 131 (622)
+.++|+| |||||||+++|+|++.. ...|... ++... ..++.+||++|+. ++.+++ + +....
T Consensus 3 i~l~G~n-----GsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~ 64 (178)
T 1ye8_A 3 IIITGEP-----GVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF 64 (178)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETTC
T ss_pred EEEECCC-----CCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-HhhcC
Confidence 4566676 89999999999998752 2334221 12211 3467899999975 333332 1 01000
Q ss_pred CccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHH-----HhhCCCeEEEeC--CCCCCCH
Q psy2519 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE-----LLTDPALLLCDE--PTTGLDS 204 (622)
Q Consensus 132 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a-----L~~~P~lLlLDE--PTsgLD~ 204 (622)
.-.+..++++.+ ||||||||++||++ |+.+|++++||| ||++||+
T Consensus 65 --------------------~~~~~~~~~~~~--------lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~ 116 (178)
T 1ye8_A 65 --------------------TSKKLVGSYGVN--------VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSK 116 (178)
T ss_dssp --------------------CCSSEETTEEEC--------HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCH
T ss_pred --------------------CccccccccccC--------cCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCH
Confidence 001234555555 99999999999996 999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEec---cCcHHHHhhccceeeecCCceEE
Q psy2519 205 FSASKLIRMMRELTSQRKKTVLCTIH---QPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 205 ~~~~~i~~~l~~l~~~~g~tvi~~tH---~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
.....+.+.+++ .+.|+|+++| + .+.+.+++|| .+|+++.
T Consensus 117 ~~~~~l~~~l~~----~~~~~i~~~H~~h~-~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 117 KFRDLVRQIMHD----PNVNVVATIPIRDV-HPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHHHHHTC----TTSEEEEECCSSCC-SHHHHHHHTC----TTCEEEE
T ss_pred HHHHHHHHHHhc----CCCeEEEEEccCCC-chHHHHHHhc----CCcEEEE
Confidence 999998888865 4677888886 6 4678888887 4566654
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.85 E-value=3.3e-24 Score=230.87 Aligned_cols=177 Identities=11% Similarity=0.112 Sum_probs=135.6
Q ss_pred eeeeEeeeeEEEEcccCCCc--------------------ceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 32 VQVYAIVNLLVIMDQTASTS--------------------KTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~--------------------~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
..+++++++++ ++|+ .+.++|+| |||||||+|+|+|+.+| .+|+|.+
T Consensus 36 ~~~l~~is~~i-----~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~n-----GaGKSTLln~L~Gl~~p---~~GsI~~ 102 (413)
T 1tq4_A 36 QEILNLIELRM-----RAGNIQLTNSAISDALKEIDSSVLNVAVTGET-----GSGKSSFINTLRGIGNE---EEGAAKT 102 (413)
T ss_dssp HHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHCCEEEEEEECT-----TSSHHHHHHHHHTCCTT---STTSCCC
T ss_pred HHHhhhcccee-----cCCCCcccchhhhhhhhhcccCCeEEEEECCC-----CCcHHHHHHHHhCCCCc---cCceEEE
Confidence 35678888877 4455 77888887 79999999999999998 4899999
Q ss_pred CCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 92 NGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 92 ~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
+|.+.+ ++ ++++|++ .++.+|+.|++.++.. +.+++++++.+++.+.. .. -.
T Consensus 103 ~g~~~t---~~--~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~-~~-~~-------- 154 (413)
T 1tq4_A 103 GVVEVT---ME--RHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYD-FF-II-------- 154 (413)
T ss_dssp CC-------CC--CEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCS-EE-EE--------
T ss_pred CCeecc---ee--EEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccC-Ce-EE--------
Confidence 998764 22 7899985 5788999998755320 12357889999987642 22 11
Q ss_pred cChH--HHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh----cC----CCEEEEEecc
Q psy2519 172 LSGG--ERKRLSFATELLT----------DPALLLCDEPTTGLDSFSASKLIRMMRELTS----QR----KKTVLCTIHQ 231 (622)
Q Consensus 172 LSgG--qrqRvsIA~aL~~----------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~----~~----g~tvi~~tH~ 231 (622)
|||| ||||+.||++|+. +|++++|||||+|||+.++.++.+.++++.+ +. ..+|++++|+
T Consensus 155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~ 234 (413)
T 1tq4_A 155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN 234 (413)
T ss_dssp EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence 9999 9999999999999 9999999999999999999999999999852 23 3678899998
Q ss_pred CcH-HHHhhcccee-eecCC
Q psy2519 232 PSS-ELIDMFDKII-LLADS 249 (622)
Q Consensus 232 ~~~-~i~~~~D~v~-~L~~G 249 (622)
... .+.+++|++. .|.+|
T Consensus 235 l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 235 VCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp TTSTTHHHHHHHHHHHSCGG
T ss_pred CCccCHHHHHHHHHHhCccc
Confidence 632 2888888874 44333
No 73
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.82 E-value=2.3e-23 Score=226.75 Aligned_cols=192 Identities=13% Similarity=0.021 Sum_probs=152.6
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE-
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK- 94 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~- 94 (622)
..++++||++.|.. +.++++++ +++ ++|+.+.|+|+| ||||||||++|+|+.+| .+|.|.++|+
T Consensus 130 ~~l~~~~v~~~~~t-g~~vld~v-l~i-----~~Gq~~~IvG~s-----GsGKSTLl~~Iag~~~~---~~G~i~~~G~r 194 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-GVRAINAL-LTV-----GRGQRMGLFAGS-----GVGKSVLLGMMARYTRA---DVIVVGLIGER 194 (438)
T ss_dssp CTTTSCCCCSBCCC-SCHHHHHH-SCC-----BTTCEEEEEECT-----TSSHHHHHHHHHHHSCC---SEEEEEEESCC
T ss_pred CceEEeccceecCC-CceEEeee-EEe-----cCCCEEEEECCC-----CCCHHHHHHHHhcccCC---CeEEEEEecee
Confidence 57899999999732 46789999 888 678888888887 89999999999999998 4899999998
Q ss_pred --ecCc---------cccccEEEEecC-CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccC
Q psy2519 95 --PVEG---------KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 162 (622)
Q Consensus 95 --~~~~---------~~r~~igyV~Q~-~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~ 162 (622)
++.. .+++.++||+|+ +.+++.+||.+|+.+.++.... ..+++. ...|. +.
T Consensus 195 ~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-------~~~~v~---------~~ld~-l~ 257 (438)
T 2dpy_A 195 GREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-------RGQHVL---------LIMDS-LT 257 (438)
T ss_dssp HHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-------TTCEEE---------EEEEC-HH
T ss_pred cHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-------CCCCHH---------HHHHh-HH
Confidence 4432 256789999995 6678889999999887643210 000000 11111 22
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCC-----EEEEEeccCcH
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS---QRKK-----TVLCTIHQPSS 234 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~---~~g~-----tvi~~tH~~~~ 234 (622)
. +|+|| ||++|| +.+|++ |+|||+....++.++++++++ +.|. ||++++||+.
T Consensus 258 ~--------lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~- 318 (438)
T 2dpy_A 258 R--------YAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ- 318 (438)
T ss_dssp H--------HHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-
T ss_pred H--------HHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-
Confidence 3 99999 999999 889988 999999999999999999976 2374 9999999974
Q ss_pred HHHhhccceeeecCCceEEecChHHH
Q psy2519 235 ELIDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 235 ~i~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
..++|++++|.+|+++.+|++.++
T Consensus 319 --~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 319 --DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp --CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred --chhhceEEEEeCcEEEEeCCHHHc
Confidence 568999999999999999988765
No 74
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.82 E-value=6.9e-22 Score=188.27 Aligned_cols=64 Identities=9% Similarity=0.182 Sum_probs=58.8
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhcCCCEEEEEeccCcHH
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSF----------------SASKLIRMMRELTSQRKKTVLCTIHQPSSE 235 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~----------------~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~ 235 (622)
.|||||||++||++++.+|++|+|||||++||+. .+.++.+.++++++ +|.|+|++||++ ++
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~-~g~tvi~vtH~~-~~ 161 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR-EGFRYVYILNSP-EE 161 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH-HTCSEEEEECSH-HH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh-cCCcEEEEeCCH-HH
Confidence 7999999999999999999999999999999999 66999999999987 499999999996 45
Q ss_pred HH
Q psy2519 236 LI 237 (622)
Q Consensus 236 i~ 237 (622)
+.
T Consensus 162 ~~ 163 (171)
T 4gp7_A 162 VE 163 (171)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 75
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.82 E-value=1.8e-24 Score=223.98 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=128.0
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|. .++|+++++++ ++|+.++|+|+| |||||||+++|+|+. +|+|
T Consensus 100 ~~i~~~~vs~~y~---~~vL~~vsl~i-----~~Ge~vaIvGps-----GsGKSTLl~lL~gl~------~G~I------ 154 (305)
T 2v9p_A 100 TFFNYQNIELITF---INALKLWLKGI-----PKKNCLAFIGPP-----NTGKSMLCNSLIHFL------GGSV------ 154 (305)
T ss_dssp HHHHHTTCCHHHH---HHHHHHHHHTC-----TTCSEEEEECSS-----SSSHHHHHHHHHHHH------TCEE------
T ss_pred CeEEEEEEEEEcC---hhhhccceEEe-----cCCCEEEEECCC-----CCcHHHHHHHHhhhc------CceE------
Confidence 4588999999984 57899999999 677788888776 899999999999987 4877
Q ss_pred cCccccccEEEEecCCCCCCCCCHHH-HHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYE-HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E-~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
++|++|++.+++. |++| |+.+.. ..+. .+.+.++.+ |.+..+ ..+ |||
T Consensus 155 --------~~~v~q~~~lf~~-ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld--g~~--------LSg 203 (305)
T 2v9p_A 155 --------LSFANHKSHFWLA-SLADTRAALVD------DATH-----ACWRYFDTY-LRNALD--GYP--------VSI 203 (305)
T ss_dssp --------ECGGGTTSGGGGG-GGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG--TCC--------EEC
T ss_pred --------EEEecCccccccc-cHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC--ccC--------cCH
Confidence 3567888777764 7776 776531 1111 344556654 444444 222 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||| ||||+.+|+||| |++||+.+...+.. .+|++. ..+.+|+| +|++|++++.
T Consensus 204 GqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~--~~~~aD~i-vl~~G~iv~~ 258 (305)
T 2v9p_A 204 DRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQ--TFRFEQPC-TDESGEQPFN 258 (305)
T ss_dssp CCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------------GTTTEE--EEECCCCC-CCC---CCCC
T ss_pred HHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHH--HHHhCCEE-EEeCCEEEEe
Confidence 99999 999999999999 99999999888752 288863 45789999 9999999999
Q ss_pred cChHHHHHHHHh
Q psy2519 255 GSKDAALAFLES 266 (622)
Q Consensus 255 G~~~~~~~~~~~ 266 (622)
|+++++...|.+
T Consensus 259 g~~~el~~~y~~ 270 (305)
T 2v9p_A 259 ITDADWKSFFVR 270 (305)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999988555543
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.81 E-value=9.8e-23 Score=208.42 Aligned_cols=145 Identities=11% Similarity=0.105 Sum_probs=96.0
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 131 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~ 131 (622)
+.++|+| |||||||+|+|+|+..| .+|+|.++|+++.. ..++.+||++|++.+++.+||.||+.|+.....
T Consensus 5 v~lvG~n-----GaGKSTLln~L~g~~~~---~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~ 76 (270)
T 3sop_A 5 IMVVGQS-----GLGKSTLVNTLFKSQVS---RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN 76 (270)
T ss_dssp EEEEESS-----SSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC
T ss_pred EEEECCC-----CCCHHHHHHHHhCCCCC---CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc
Confidence 4567776 89999999999999998 58999999998865 356789999999999999999999999754432
Q ss_pred CccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q psy2519 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI 211 (622)
Q Consensus 132 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~ 211 (622)
.. . .+.+.+.++ .+..+...++ ||||||||+++||+++. ++++||||.|||+.. .
T Consensus 77 ~~--~----~~~i~~~~~----~~~~~~~~~~--------LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~ 131 (270)
T 3sop_A 77 EN--C----WEPIEKYIN----EQYEKFLKEE--------VNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----L 131 (270)
T ss_dssp TT--C----SHHHHHHHH----HHHHHHHHHH--------SCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----H
T ss_pred HH--H----HHHHHHHHH----HHHHhhhHHh--------cCcccchhhhhheeeee---eEEEecCCCcCCHHH----H
Confidence 11 1 112223332 2333445444 99999999999999886 999999999999987 5
Q ss_pred HHHHHHHhcCCCEEEEEeccC
Q psy2519 212 RMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 212 ~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+.++++++ . .+||+++|..
T Consensus 132 ~~l~~L~~-~-~~vI~Vi~K~ 150 (270)
T 3sop_A 132 EFMKHLSK-V-VNIIPVIAKA 150 (270)
T ss_dssp HHHHHHHT-T-SEEEEEETTG
T ss_pred HHHHHHHh-c-CcEEEEEecc
Confidence 66777765 4 8999999863
No 77
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.81 E-value=6.4e-20 Score=212.96 Aligned_cols=136 Identities=23% Similarity=0.353 Sum_probs=113.8
Q ss_pred CCCCCHHHHHHHHHHcCCCcccc------HHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHH
Q psy2519 114 SPSLTVYEHLYFMALLKLDRRVK------AYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATEL 186 (622)
Q Consensus 114 ~~~lTV~E~l~f~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL 186 (622)
+..+||.|++.|...+.++.... .++..+++ +.++.+||... .++.+++ |||||||||+||++|
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~t--------LSGGEkQRV~LA~aL 519 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGT--------LSGGEAQRIRLATQI 519 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGG--------CCHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcccc--------CCHHHHHHHHHHHHH
Confidence 35689999999977665432100 02344555 46899999864 6888777 999999999999999
Q ss_pred hhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChH
Q psy2519 187 LTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKD 258 (622)
Q Consensus 187 ~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~ 258 (622)
..+| ++|+|||||+|||+.....+.+.|++|++ .|.|||+|+|++ +++ +.||+|++| ++|++++.|+++
T Consensus 520 ~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl-~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~ 596 (972)
T 2r6f_A 520 GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPE 596 (972)
T ss_dssp TTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCH-HHH-HSCSEEEEECSSSGGGCCSEEEEECTT
T ss_pred hhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHH-HhCCEEEEeCCCccCCCCEEEEecCHH
Confidence 9985 99999999999999999999999999986 799999999996 454 679999999 799999999998
Q ss_pred HHH
Q psy2519 259 AAL 261 (622)
Q Consensus 259 ~~~ 261 (622)
++.
T Consensus 597 e~~ 599 (972)
T 2r6f_A 597 EVM 599 (972)
T ss_dssp TTT
T ss_pred HHH
Confidence 764
No 78
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.81 E-value=6.9e-22 Score=205.21 Aligned_cols=167 Identities=11% Similarity=0.062 Sum_probs=128.2
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--------cc--cccEEEEecCCC-CCCC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--------KF--RSACGFMYQHDL-FSPS 116 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--------~~--r~~igyV~Q~~~-l~~~ 116 (622)
++|+.+.++|+| |||||||++.|+|+++| .+|+|.++|.++.+ .+ ++.++|++|++. ++|.
T Consensus 98 ~~g~vi~lvG~n-----GsGKTTll~~Lag~l~~---~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 98 RKPAVIMIVGVN-----GGGKTTSLGKLAHRLKN---EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp SSCEEEEEECCT-----TSCHHHHHHHHHHHHHH---TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred CCCcEEEEEcCC-----CCCHHHHHHHHHHHHHH---cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 456677777776 89999999999999987 37999999998753 12 357999999988 8999
Q ss_pred CCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC--eEE
Q psy2519 117 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLL 194 (622)
Q Consensus 117 lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~--lLl 194 (622)
+||+|++.++..... . ..+++.+|+.+..++.+++ || |||++|||+|+.+|+ +|+
T Consensus 170 ~~v~e~l~~~~~~~~----d--------~~lldt~gl~~~~~~~~~e--------LS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGY----D--------VVLCDTSGRLHTNYSLMEE--------LI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp HHHHHHHHHHHHTTC----S--------EEEECCCCCSSCCHHHHHH--------HH---HHHHHHHTTSTTCCSEEEEE
T ss_pred HHHHHHHHHHHHcCC----c--------chHHhcCCCCcchhHHHHH--------HH---HHHHHHHHhhccCCCeeEEE
Confidence 999999988643211 0 1356677887777777665 99 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC--------cHHHHhhccceeeecCCceE
Q psy2519 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP--------SSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 195 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~--------~~~i~~~~D~v~~L~~G~iv 252 (622)
|| ||+|||+... +++++++.|.|+|++||.. .+.+.+..+.|.++..|+.+
T Consensus 227 LD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 227 LD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp EE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred Ee-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99 9999999855 3566654699999999932 12344556778888888653
No 79
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.80 E-value=4.6e-20 Score=213.75 Aligned_cols=178 Identities=16% Similarity=0.223 Sum_probs=129.5
Q ss_pred CCCChHHHHHHHhCCCCCCC------ceeeEEEECCEecCc----cccccEEEEecCCCC---CC----CCCHHHHHHHH
Q psy2519 64 PNVDFSELIRLFLSQVIDDC------IIDGDIRVNGKPVEG----KFRSACGFMYQHDLF---SP----SLTVYEHLYFM 126 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~------~~~G~I~~~G~~~~~----~~r~~igyV~Q~~~l---~~----~lTV~E~l~f~ 126 (622)
|..||+++.+.+....=|.+ ..+|+|.++|+++.+ ...+.++++.|.+.- .. .++- ++....
T Consensus 271 ~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~ 349 (842)
T 2vf7_A 271 SASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIAL 349 (842)
T ss_dssp CHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHHH
T ss_pred CHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHHH
Confidence 34689999988876332211 047899999998754 123333444332110 00 0110 111111
Q ss_pred HHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHHhhCC--CeEEEeCCCCCCC
Q psy2519 127 ALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDP--ALLLCDEPTTGLD 203 (622)
Q Consensus 127 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P--~lLlLDEPTsgLD 203 (622)
..+ .++..++++ .++.+||.+. .++.+.+ |||||||||+||++|+.+| ++|+|||||+|||
T Consensus 350 ~~i-------~~ei~~rl~-~L~~vGL~~l~l~r~~~t--------LSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld 413 (842)
T 2vf7_A 350 QRM-------AADLVKRLD-VLLHLGLGYLGLDRSTPT--------LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLH 413 (842)
T ss_dssp HHH-------HHHHHHHHH-HHHHTTCTTSBTTCBGGG--------SCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCC
T ss_pred HHH-------HHHHHHHHH-HHHhCCCCcCCccCCcCc--------CCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCC
Confidence 111 134455665 6889999865 6888777 9999999999999999999 5999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHH
Q psy2519 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 261 (622)
Q Consensus 204 ~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 261 (622)
+..+..+.++|++|++ .|.|||+++|++ + +.+.||+|++| ++|++++.|+++++.
T Consensus 414 ~~~~~~L~~~l~~L~~-~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 414 PADTEALLSALENLKR-GGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp GGGHHHHHHHHHHHHT-TTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 9999999999999987 799999999996 4 55789999999 799999999998764
No 80
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.80 E-value=1.2e-19 Score=211.36 Aligned_cols=139 Identities=24% Similarity=0.347 Sum_probs=113.8
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcccc------HHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHH
Q psy2519 112 LFSPSLTVYEHLYFMALLKLDRRVK------AYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFAT 184 (622)
Q Consensus 112 ~l~~~lTV~E~l~f~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~ 184 (622)
..+..+||.|++.|...+..+.... .++..+++ +.++.+||... .++.+.+ |||||||||+||+
T Consensus 464 ~q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~t--------LSGGEkQRV~LA~ 534 (993)
T 2ygr_A 464 AEVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAAT--------LSGGEAQRIRLAT 534 (993)
T ss_dssp GCSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGG--------CCHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCccc--------CCHHHHHHHHHHH
Confidence 3456789999999955444322100 02334455 45899999865 6888777 9999999999999
Q ss_pred HHhhC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecC
Q psy2519 185 ELLTD--PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGS 256 (622)
Q Consensus 185 aL~~~--P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~ 256 (622)
+|..+ |++|+|||||+|||+.....+.+.|++|++ .|.|||+|+|++ +.+ +.||+|++| ++|++++.|+
T Consensus 535 aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl-~~i-~~ADrIi~Lgp~aG~~gG~iv~~G~ 611 (993)
T 2ygr_A 535 QIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLIVVEHDE-DTI-EHADWIVDIGPGAGEHGGRIVHSGP 611 (993)
T ss_dssp HHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-HTCSEEEEECSSSGGGCCSCCEEEC
T ss_pred HHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEEEECCCH-HHH-HhCCEEEEecCccccCCCEEEEeeC
Confidence 99999 589999999999999999999999999987 799999999996 454 689999999 7999999999
Q ss_pred hHHHHH
Q psy2519 257 KDAALA 262 (622)
Q Consensus 257 ~~~~~~ 262 (622)
++++.+
T Consensus 612 ~~e~~~ 617 (993)
T 2ygr_A 612 YDELLR 617 (993)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 998753
No 81
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.78 E-value=9.5e-21 Score=200.53 Aligned_cols=166 Identities=11% Similarity=0.066 Sum_probs=129.2
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--------cc--cccEEEEecCCC-CCCC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--------KF--RSACGFMYQHDL-FSPS 116 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--------~~--r~~igyV~Q~~~-l~~~ 116 (622)
++++.+.++|+| |||||||++.|+|+++| .+|+|.++|.++.+ .+ ++.++|++|++. ++|.
T Consensus 155 ~~g~vi~lvG~n-----GsGKTTll~~Lag~l~~---~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 155 RKPAVIMIVGVN-----GGGKTTSLGKLAHRLKN---EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp SSSEEEEEECCT-----TSCHHHHHHHHHHHHHH---TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCCeEEEEEcCC-----CChHHHHHHHHHhhccc---cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 456677777776 89999999999999987 37999999998743 11 457999999988 8999
Q ss_pred CCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC--eEE
Q psy2519 117 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLL 194 (622)
Q Consensus 117 lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~--lLl 194 (622)
+||+|++.++..... . ..+++.+|+.+..++.+.+ || |||++|||+|+.+|+ +|+
T Consensus 227 ~tv~e~l~~~~~~~~----d--------~~lldt~Gl~~~~~~~~~e--------LS---kqr~~iaral~~~P~e~lLv 283 (359)
T 2og2_A 227 TVLSKAVKRGKEEGY----D--------VVLCDTSGRLHTNYSLMEE--------LI---ACKKAVGKIVSGAPNEILLV 283 (359)
T ss_dssp HHHHHHHHHHHHTTC----S--------EEEEECCCCSSCCHHHHHH--------HH---HHHHHHHHHSTTCCSEEEEE
T ss_pred hhHHHHHHHHHhCCC----H--------HHHHHhcCCChhhhhHHHH--------HH---HHHHHHHHHHhcCCCceEEE
Confidence 999999998643211 0 1345677887777777655 99 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC--------cHHHHhhccceeeecCCce
Q psy2519 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP--------SSELIDMFDKIILLADSRT 251 (622)
Q Consensus 195 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~--------~~~i~~~~D~v~~L~~G~i 251 (622)
|| ||+|||+.+.. +++.++.|.|+|++||.. .+.+....+.|.++..|+.
T Consensus 284 LD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 284 LD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp EE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ec-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99 99999998653 456554699999999941 1234455677888888765
No 82
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.78 E-value=1.7e-22 Score=210.67 Aligned_cols=190 Identities=8% Similarity=-0.021 Sum_probs=130.8
Q ss_pred eecCCcccCCccccccccceeeeEeeeeEE------------------EEcccCCCcceEEEecCCcCCCCCChHHHHHH
Q psy2519 13 LFKNNEEVPNVDFSEIVGSVQVYAIVNLLV------------------IMDQTASTSKTVILFKNNEEVPNVDFSELIRL 74 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~------------------~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~ 74 (622)
..++.++++||++.| + ++++++++.+ .....++++.+.|+|+| |||||||+++
T Consensus 39 ~~~~~i~~~~v~~~y--~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~s-----GsGKSTL~~~ 109 (312)
T 3aez_A 39 GLGEQIDLLEVEEVY--L--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSV-----AVGKSTTARV 109 (312)
T ss_dssp CTTCCCCHHHHHHTH--H--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCT-----TSCHHHHHHH
T ss_pred CCCCeEEeeehhhhh--h--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCC-----CchHHHHHHH
Confidence 567889999999998 2 4555555430 00112456666666665 8999999999
Q ss_pred HhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC
Q psy2519 75 FLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM 154 (622)
Q Consensus 75 l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 154 (622)
|+|+++|. .|+ +.+++|+|++.+++. |++||+.+... +. .+.....+++.+.++.++ .
T Consensus 110 L~gll~~~---~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~g---~~~~~d~~~~~~~L~~l~-~ 167 (312)
T 3aez_A 110 LQALLARW---DHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHR-KG---FPESYNRRALMRFVTSVK-S 167 (312)
T ss_dssp HHHHHHTS---TTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTC-TT---SGGGBCHHHHHHHHHHHH-T
T ss_pred HHhhcccc---CCC-------------CeEEEEecCccCCcc-cHHHHHHHHHh-cC---CChHHHHHHHHHHHHHhC-C
Confidence 99999872 332 468999999999888 99999865321 11 122222356778888888 5
Q ss_pred cccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH
Q psy2519 155 NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234 (622)
Q Consensus 155 ~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~ 234 (622)
+..+..+.. |||||+||+++|++++.+|+|||+|||+..+|+.. ..+.+..+. .|+++|+...
T Consensus 168 ~~~~~~~~~--------lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~-~I~V~a~~~~ 230 (312)
T 3aez_A 168 GSDYACAPV--------YSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDF-SLYVDARIED 230 (312)
T ss_dssp TCSCEEEEE--------EETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSE-EEEEEECHHH
T ss_pred CcccCCccc--------CChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCc-EEEEECCHHH
Confidence 555566555 99999999999999999999999999999998621 122332333 4566666433
Q ss_pred HHHhhccceeeecCCc
Q psy2519 235 ELIDMFDKIILLADSR 250 (622)
Q Consensus 235 ~i~~~~D~v~~L~~G~ 250 (622)
......+|.+.+.+|+
T Consensus 231 ~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 231 IEQWYVSRFLAMRTTA 246 (312)
T ss_dssp HHHHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4444566666665554
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.77 E-value=4.8e-20 Score=193.83 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=111.8
Q ss_pred cCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-
Q psy2519 20 VPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG- 98 (622)
Q Consensus 20 ~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~- 98 (622)
+++++| | .++++++++.+ ++|+.++++|+| |||||||+++|+|+.+| .+|.|.++|.+...
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i-----~~g~~v~i~G~~-----GsGKTTll~~l~g~~~~---~~g~i~i~~~~e~~~ 212 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGI-----AIGKNVIVCGGT-----GSGKTTYIKSIMEFIPK---EERIISIEDTEEIVF 212 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHH-----HHTCCEEEEEST-----TSCHHHHHHHGGGGSCT---TSCEEEEESSCCCCC
T ss_pred cCchhh-H----HHHHhhhhhhc-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCcC---CCcEEEECCeecccc
Confidence 778888 5 45788999888 577788888776 89999999999999998 48999999864211
Q ss_pred -cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 99 -KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 99 -~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
..++.+++++ | |||+
T Consensus 213 ~~~~~~i~~~~--------------------------------------------------------------g--gg~~ 228 (330)
T 2pt7_A 213 KHHKNYTQLFF--------------------------------------------------------------G--GNIT 228 (330)
T ss_dssp SSCSSEEEEEC--------------------------------------------------------------B--TTBC
T ss_pred ccchhEEEEEe--------------------------------------------------------------C--CChh
Confidence 1233334332 1 7899
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
||++||++|..+|++|++||||+ .++.+.|+.+.. .+.|+|+++|+++ +.+.+||+++|.+|+..
T Consensus 229 ~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~~ 293 (330)
T 2pt7_A 229 SADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNSA 293 (330)
T ss_dssp HHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCcc
Confidence 99999999999999999999998 246777888764 4568999999973 67899999999988754
No 84
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.76 E-value=4.5e-18 Score=179.58 Aligned_cols=73 Identities=38% Similarity=0.516 Sum_probs=67.1
Q ss_pred cChHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 172 LSgGqrq------RvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.+ .|.|||++||++ ++.+.||++++
T Consensus 249 lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~--~~~~~~d~~~~ 325 (339)
T 3qkt_A 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAADHVIR 325 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChH--HHHHhCCEEEE
Confidence 9999999 66778888889999999999999999999999999999976 588999999995 57789999999
Q ss_pred ec
Q psy2519 246 LA 247 (622)
Q Consensus 246 L~ 247 (622)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 95
No 85
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.76 E-value=9.3e-19 Score=162.59 Aligned_cols=76 Identities=37% Similarity=0.482 Sum_probs=69.6
Q ss_pred cChHHHHHHHHH------HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 172 LSGGERKRLSFA------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 172 LSgGqrqRvsIA------~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||++|| |+|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||++ ++.+.||++++
T Consensus 58 LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~--~~~~~~d~ii~ 134 (148)
T 1f2t_B 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAADHVIR 134 (148)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGCSEEEE
T ss_pred CCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH--HHHHhCCEEEE
Confidence 999999999876 899999999999999999999999999999999976 589999999996 56789999999
Q ss_pred e--cCCc
Q psy2519 246 L--ADSR 250 (622)
Q Consensus 246 L--~~G~ 250 (622)
| .+|.
T Consensus 135 l~~~~g~ 141 (148)
T 1f2t_B 135 ISLENGS 141 (148)
T ss_dssp EEEETTE
T ss_pred EEcCCCe
Confidence 9 4554
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.74 E-value=8.2e-20 Score=193.06 Aligned_cols=191 Identities=13% Similarity=0.104 Sum_probs=138.6
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++++++.|.. ++.+++++ +.+ .+|+...|+|+| |||||||+++|+|+.+|+ .|.|.+.|++
T Consensus 44 ~~i~~~~l~~~~~t-g~~ald~l-l~i-----~~Gq~~gIiG~n-----GaGKTTLl~~I~g~~~~~---~g~i~~~G~~ 108 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-GVRAIDGL-LTC-----GIGQRIGIFAGS-----GVGKSTLLGMICNGASAD---IIVLALIGER 108 (347)
T ss_dssp CSTTCCCCCSEECC-SCHHHHHH-SCE-----ETTCEEEEEECT-----TSSHHHHHHHHHHHSCCS---EEEEEEESCC
T ss_pred CCeeecccceecCC-CCEEEEee-eee-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCCC---EEEEEEeccc
Confidence 46889999998732 46789999 988 678888888887 899999999999999984 8999999976
Q ss_pred cCc-----------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccC--CccC
Q psy2519 96 VEG-----------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH--TRIG 162 (622)
Q Consensus 96 ~~~-----------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~v~ 162 (622)
... .+++.+++++|.+. ...+.+.-... ...+.+.....+ .+... ..+.
T Consensus 109 ~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~ld~~~ 170 (347)
T 2obl_A 109 GREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLMMDSVT 170 (347)
T ss_dssp HHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEEEETHH
T ss_pred HHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHHHhhHH
Confidence 321 13456788887542 22222211100 000111111111 11110 2233
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCC-----EEEEEeccCcHHH
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS-QRKK-----TVLCTIHQPSSEL 236 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~-~~g~-----tvi~~tH~~~~~i 236 (622)
. ||+|| ||+++| +.+|++ |+||||....++.++++++.+ +.|. ||++++||+.
T Consensus 171 ~--------lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--- 229 (347)
T 2obl_A 171 R--------YARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--- 229 (347)
T ss_dssp H--------HHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---
T ss_pred H--------HHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---
Confidence 3 99999 899999 688877 999999999999999999975 4687 9999999974
Q ss_pred HhhccceeeecCCceEEecChHHH
Q psy2519 237 IDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 237 ~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
..+||+++++.+|+++.+|++++.
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 568999999999999999988755
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.74 E-value=2.2e-19 Score=185.68 Aligned_cols=184 Identities=10% Similarity=-0.010 Sum_probs=117.9
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee-EEEECCEecCc-cccccEEEEecC
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG-DIRVNGKPVEG-KFRSACGFMYQH 110 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G-~I~~~G~~~~~-~~r~~igyV~Q~ 110 (622)
++|+++++.+ .+|+.++++|+| |||||||++.|+|...+. +| +|.+.+.+... ++++++..+.|+
T Consensus 23 ~~Ld~i~~~l-----~~G~~~~i~G~~-----G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~ 89 (296)
T 1cr0_A 23 TGINDKTLGA-----RGGEVIMVTSGS-----GMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNR 89 (296)
T ss_dssp TTHHHHHCSB-----CTTCEEEEEEST-----TSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCC-----CCCeEEEEEeCC-----CCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcC
Confidence 4678887766 456666666665 899999999999998763 47 67554433332 333344444443
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH-HHHHHHHHHHhhC
Q psy2519 111 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE-RKRLSFATELLTD 189 (622)
Q Consensus 111 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq-rqRvsIA~aL~~~ 189 (622)
.. +++.+++.... + +.++..+.++++++..++. .+...++ +|.+| +||+. |+++..+
T Consensus 90 ~~----~~~~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~--i~~~~~~--------~~~~~l~~~~~-a~~~~~~ 147 (296)
T 1cr0_A 90 VR----LRQSDSLKREI-I------ENGKFDQWFDELFGNDTFH--LYDSFAE--------AETDRLLAKLA-YMRSGLG 147 (296)
T ss_dssp CC----GGGCHHHHHHH-H------HHTHHHHHHHHHHSSSCEE--EECCCCS--------CCHHHHHHHHH-HHHHTTC
T ss_pred CC----hhhccccccCC-C------CHHHHHHHHHHHhccCCEE--EECCCCC--------CCHHHHHHHHH-HHHHhcC
Confidence 22 12334443321 1 1222333444544332321 1112122 88888 67777 9999999
Q ss_pred CCeEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhcCCCEEEEEeccCc-H--------------------HHHhhcc
Q psy2519 190 PALLLCDEPTT---G---LDS-FSASKLIRMMRELTSQRKKTVLCTIHQPS-S--------------------ELIDMFD 241 (622)
Q Consensus 190 P~lLlLDEPTs---g---LD~-~~~~~i~~~l~~l~~~~g~tvi~~tH~~~-~--------------------~i~~~~D 241 (622)
|+++++||||+ + +|+ ....++.+.|++++++.|+|||+++|+.. . .+.+.||
T Consensus 148 p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD 227 (296)
T 1cr0_A 148 CDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD 227 (296)
T ss_dssp CSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCS
T ss_pred CCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCc
Confidence 99999999999 5 566 67788999999999867999999999951 3 6788999
Q ss_pred ceeeecCCce
Q psy2519 242 KIILLADSRT 251 (622)
Q Consensus 242 ~v~~L~~G~i 251 (622)
+|++|++|+.
T Consensus 228 ~vi~L~~~~~ 237 (296)
T 1cr0_A 228 TIIALERNQQ 237 (296)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEecCcc
Confidence 9999998875
No 88
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.73 E-value=6.9e-18 Score=178.82 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=74.4
Q ss_pred ccChHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 171 VLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
.||||||||++||++|+ .+|+||||||||++||+..+..+++.++++. .|+|++||. . . .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~-~---~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-A-P---GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-C-T---TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-c-c---cCC
Confidence 49999999999999999 8999999999999999999999999998863 699999995 3 3 899
Q ss_pred ceeeecCCceEEecChHHH
Q psy2519 242 KIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~ 260 (622)
+++++++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999998765
No 89
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.73 E-value=6.1e-22 Score=196.20 Aligned_cols=177 Identities=8% Similarity=-0.004 Sum_probs=116.0
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-----cccccEEEE
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-----KFRSACGFM 107 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-----~~r~~igyV 107 (622)
.-|+++|+++ .+|+.++++|+| |||||||+++|+|+. | |+|.+ |.+++. ..++.++|+
T Consensus 11 ~~l~~isl~i-----~~G~~~~lvGps-----GsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~ 73 (218)
T 1z6g_A 11 SSGLVPRGSM-----NNIYPLVICGPS-----GVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYY 73 (218)
T ss_dssp ----------------CCCCEEEECST-----TSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBE
T ss_pred ccccCCceec-----CCCCEEEEECCC-----CCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEE
Confidence 3588999998 567777788776 899999999999987 4 78888 776532 245789999
Q ss_pred ecCCCCCCCCCH-HHHHH---HHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHH-
Q psy2519 108 YQHDLFSPSLTV-YEHLY---FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSF- 182 (622)
Q Consensus 108 ~Q~~~l~~~lTV-~E~l~---f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsI- 182 (622)
+|++.+++.++. .+++. +....+ ..+. +.++++++...+. ..+ .+ +|||||||++|
T Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~~-il~---~~--------lsggq~qR~~i~ 134 (218)
T 1z6g_A 74 FIDKTIFEDKLKNEDFLEYDNYANNFY---GTLK----SEYDKAKEQNKIC-LFE---MN--------INGVKQLKKSTH 134 (218)
T ss_dssp ECCHHHHHHHHHTTCEEEEEEETTEEE---EEEH----HHHHHHHHTTCEE-EEE---EC--------HHHHHHHTTCSS
T ss_pred ECCHHHHHHhhhccchhhhhhcccccC---CCcH----HHHHHHHhCCCcE-EEE---ec--------HHHHHHHHHHhc
Confidence 998876665431 11211 111111 1122 2355666653321 111 12 99999999999
Q ss_pred ----HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc------CCCEEEEEeccCcHHHHhhccceeee
Q psy2519 183 ----ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ------RKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 183 ----A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~------~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
+++++.+|++++|||||+++|..+...+.+.+++..++ .+.+.|+++|++ +++.+.+|+++.-
T Consensus 135 ~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~ii~~ 207 (218)
T 1z6g_A 135 IKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL-TLTYQQLKNYLLN 207 (218)
T ss_dssp CCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH-HHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH-HHHHHHHHHHHHH
Confidence 89999999999999999999999999999998887653 356677777774 5666677766543
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.72 E-value=5e-19 Score=209.96 Aligned_cols=180 Identities=14% Similarity=0.076 Sum_probs=118.5
Q ss_pred CCcccCC-----ccccccccceeeeEeeeeEEEEc--ccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeE
Q psy2519 16 NNEEVPN-----VDFSEIVGSVQVYAIVNLLVIMD--QTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGD 88 (622)
Q Consensus 16 ~~~~~~~-----~~~~~~~g~~~~l~~v~l~~~~~--~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~ 88 (622)
..++++| |++.|. |+..+++++++.+.-+ ....|+.++|+|+| |||||||||++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~-~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpN-----gsGKSTlLr~i-Gl~~~------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF-GDDFIPNDILIGCEEEEQENGKAYCVLVTGPN-----MGGKSTLMRQA-GLLAV------- 814 (1022)
T ss_dssp CCEEEEEECCCC-------CCCCCCEEEEESCCCSCC---CCCEEEEECCT-----TSSHHHHHHHH-HHHHH-------
T ss_pred ceEEEEeccccEEEEEec-CCceEeeeeeeccccccccCCCCcEEEEECCC-----CCChHHHHHHH-HHHHH-------
Confidence 4578888 888762 5667899999876100 00114566666666 89999999999 88753
Q ss_pred EEECCEecCccccccEE-EEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 89 IRVNGKPVEGKFRSACG-FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 89 I~~~G~~~~~~~r~~ig-yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
..++| ||||+.. .+||.|++.. .+|+.+.......+
T Consensus 815 ------------~aqiG~~Vpq~~~---~l~v~d~I~~------------------------rig~~d~~~~~~st---- 851 (1022)
T 2o8b_B 815 ------------MAQMGCYVPAEVC---RLTPIDRVFT------------------------RLGASDRIMSGEST---- 851 (1022)
T ss_dssp ------------HHTTTCCEESSEE---EECCCSBEEE------------------------ECC---------CH----
T ss_pred ------------HhheeEEeccCcC---CCCHHHHHHH------------------------HcCCHHHHhhchhh----
Confidence 12455 9999763 4566665411 11222212222233
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH-HHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA-SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~-~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
+|+++++ +++|++++++|+++||||||+|+|+... ..+++++++++++.|.++|++||++ +.+...+|++.++
T Consensus 852 ----f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~ 925 (1022)
T 2o8b_B 852 ----FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR 925 (1022)
T ss_dssp ----HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE
T ss_pred ----hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee
Confidence 8887775 9999999999999999999999999985 5578999999874499999999995 6777789999887
Q ss_pred cCCceE--EecChHH
Q psy2519 247 ADSRTA--FIGSKDA 259 (622)
Q Consensus 247 ~~G~iv--~~G~~~~ 259 (622)
+|++. +.|++++
T Consensus 926 -~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 926 -LGHMACMVENECED 939 (1022)
T ss_dssp -EEEEEEC-------
T ss_pred -cCeEEEEEecCccc
Confidence 58887 5565543
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.69 E-value=3.2e-20 Score=207.30 Aligned_cols=180 Identities=11% Similarity=0.020 Sum_probs=123.2
Q ss_pred cccCCccccccccceeeeEeeee-EEEEcccCCCcceEEEecCCcCCCCCChHHHHHH--HhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNL-LVIMDQTASTSKTVILFKNNEEVPNVDFSELIRL--FLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l-~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~--l~g~~~~~~~~~G~I~~~G~ 94 (622)
.+.+++.+. .+++++|+++++ .+ .+|+.++++|+| |||||||+++ ++|+.+|+ +|.|+++|+
T Consensus 13 ~~~~~~~~~--~~g~~~Ld~i~~G~i-----~~Ge~~~l~G~n-----GsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~ 77 (525)
T 1tf7_A 13 SEHQAIAKM--RTMIEGFDDISHGGL-----PIGRSTLVSGTS-----GTGKTLFSIQFLYNGIIEFD---EPGVFVTFE 77 (525)
T ss_dssp -CCSSCCEE--CCCCTTHHHHTTSSE-----ETTSEEEEEEST-----TSSHHHHHHHHHHHHHHHHC---CCEEEEESS
T ss_pred ccccccccc--cCCchhHHHhcCCCC-----CCCeEEEEEcCC-----CCCHHHHHHHHHHHHHHhCC---CCEEEEEEe
Confidence 445556553 356789999999 88 567777777776 8999999999 78999874 899999998
Q ss_pred ecCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 95 PVEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 95 ~~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
+... ..++.+||++|+....+. +.+ ..... . ++..++++.++|.+..++.+..
T Consensus 78 ~~~~~~~~~~~~~g~~~q~~~~~~~------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~~~~~-------- 133 (525)
T 1tf7_A 78 ETPQDIIKNARSFGWDLAKLVDEGK------LFI---LDASP--D-----PEGQEVVGGFDLSALIERINYA-------- 133 (525)
T ss_dssp SCHHHHHHHHGGGTCCHHHHHHTTS------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHcCCChHHhhccCc------EEE---EecCc--c-----cchhhhhcccCHHHHHHHHHHH--------
Confidence 8533 245678999997542211 100 00000 0 0001122233333333333333
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHH--------HHh
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTT-----GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE--------LID 238 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTs-----gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~--------i~~ 238 (622)
|||| +|+++++||||+ +||+..+.++.++++++++ .|+|||+++|++... +..
T Consensus 134 LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~ 199 (525)
T 1tf7_A 134 IQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEF 199 (525)
T ss_dssp HHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHH
T ss_pred HHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceee
Confidence 5555 588999999998 5699999999999999987 699999999997432 355
Q ss_pred hccceeeecCCc
Q psy2519 239 MFDKIILLADSR 250 (622)
Q Consensus 239 ~~D~v~~L~~G~ 250 (622)
+||+|++|++|+
T Consensus 200 laD~vi~L~~~~ 211 (525)
T 1tf7_A 200 VSDNVVILRNVL 211 (525)
T ss_dssp HCSEEEEEEEEC
T ss_pred eeeEEEEEEEEc
Confidence 699999999843
No 92
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.69 E-value=1.9e-18 Score=173.91 Aligned_cols=179 Identities=10% Similarity=0.026 Sum_probs=107.9
Q ss_pred ccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEe
Q psy2519 29 VGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMY 108 (622)
Q Consensus 29 ~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~ 108 (622)
.|+.++|+++|+++ .++..+.|.|+| |||||||+++|+|++ |.+.++ ..++.++|++
T Consensus 9 ~~~~~~l~~isl~i-----~~g~iigI~G~~-----GsGKSTl~k~L~~~l-------G~~~~~------~~~~~i~~v~ 65 (245)
T 2jeo_A 9 SGVDLGTENLYFQS-----MRPFLIGVSGGT-----ASGKSTVCEKIMELL-------GQNEVE------QRQRKVVILS 65 (245)
T ss_dssp -------------------CCSEEEEEECST-----TSSHHHHHHHHHHHH-------TGGGSC------GGGCSEEEEE
T ss_pred CCCceeecceeccC-----CCCEEEEEECCC-----CCCHHHHHHHHHHHh-------chhccc------ccCCceEEEe
Confidence 47788999999998 556667777666 899999999999965 222232 2467899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhh
Q psy2519 109 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188 (622)
Q Consensus 109 Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~ 188 (622)
|++ +++.+|+.|++.+......... +.....+.+.+.++.+ .+..+..+.. +|+||+||+++ ++++.
T Consensus 66 ~d~-~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~~~~--------ls~g~~~r~~~-~~~~~ 132 (245)
T 2jeo_A 66 QDR-FYKVLTAEQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVEVPT--------YDFVTHSRLPE-TTVVY 132 (245)
T ss_dssp GGG-GBCCCCHHHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEEECC--------EETTTTEECSS-CEEEC
T ss_pred CCc-CccccCHhHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCeeccc--------ccccccCccCc-eEEec
Confidence 985 7888999999987643321110 1111122344555543 3445555555 99999999988 58888
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh-hccceeeecCCceEEecChHHHHHH
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSRTAFIGSKDAALAF 263 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~~~~ 263 (622)
+|+++++|||....|.. +.++ .+.+|++++|+. ..+.+ +++++ ++|+ +.+++.+.
T Consensus 133 ~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~~-~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 133 PADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDSD-VRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp CCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCHH-HHHHHHHHHHT---C--------CHHHHHHH
T ss_pred CCCEEEEeCccccccHH--------HHHh---cCeEEEEECCHH-HHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 99999999998888863 2222 378999999973 34433 34444 6665 45666543
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.68 E-value=2.7e-17 Score=183.56 Aligned_cols=152 Identities=14% Similarity=0.057 Sum_probs=113.3
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
.+|+.+.+.|+| |||||||++.++|...+ +|+ +.+.+++|++. .++.++. .
T Consensus 279 ~~G~i~~i~G~~-----GsGKSTLl~~l~g~~~~----~G~-------------~vi~~~~ee~~----~~l~~~~---~ 329 (525)
T 1tf7_A 279 FKDSIILATGAT-----GTGKTLLVSRFVENACA----NKE-------------RAILFAYEESR----AQLLRNA---Y 329 (525)
T ss_dssp ESSCEEEEEECT-----TSSHHHHHHHHHHHHHT----TTC-------------CEEEEESSSCH----HHHHHHH---H
T ss_pred CCCcEEEEEeCC-----CCCHHHHHHHHHHHHHh----CCC-------------CEEEEEEeCCH----HHHHHHH---H
Confidence 355566666665 89999999999998876 232 12456677641 1223222 1
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH--
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF-- 205 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~-- 205 (622)
++. .+. ++ +...|+.+..+..+.+ |||||+||+.+|+++..+|++|++| ||+|||+.
T Consensus 330 ~~g----~~~-------~~-~~~~g~~~~~~~~p~~--------LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~ 388 (525)
T 1tf7_A 330 SWG----MDF-------EE-MERQNLLKIVCAYPES--------AGLEDHLQIIKSEINDFKPARIAID-SLSALARGVS 388 (525)
T ss_dssp TTS----CCH-------HH-HHHTTSEEECCCCGGG--------SCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSC
T ss_pred HcC----CCH-------HH-HHhCCCEEEEEecccc--------CCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCC
Confidence 111 111 12 2346666666666544 9999999999999999999999999 99999999
Q ss_pred ---HHHHHHHHHHHHHhcCCCEEEEEeccCc---------HHHHhhccceeeecCCc
Q psy2519 206 ---SASKLIRMMRELTSQRKKTVLCTIHQPS---------SELIDMFDKIILLADSR 250 (622)
Q Consensus 206 ---~~~~i~~~l~~l~~~~g~tvi~~tH~~~---------~~i~~~~D~v~~L~~G~ 250 (622)
.+..+.++++.+++ .|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 389 ~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 389 NNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999999987 7999999999961 46778999999999886
No 94
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.67 E-value=1.1e-18 Score=181.22 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=86.6
Q ss_pred CCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC-CCCCCceeeEEEECCEecCcc
Q psy2519 21 PNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ-VIDDCIIDGDIRVNGKPVEGK 99 (622)
Q Consensus 21 ~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~-~~~~~~~~G~I~~~G~~~~~~ 99 (622)
+||++.| |+..+++++++++ +++|+| |||||||++.|.|. ..| .+| |.++|.++...
T Consensus 2 ~~l~~~~--~~~~~l~~~~~~I-----------~lvG~n-----G~GKSTLl~~L~g~~~~~---~~g-i~~~g~~~~~t 59 (301)
T 2qnr_A 2 SNLPNQV--HRKSVKKGFEFTL-----------MVVGES-----GLGKSTLINSLFLTDLYP---ERV-ISGAAEKIERT 59 (301)
T ss_dssp ------------------CEEE-----------EEEEET-----TSSHHHHHHHHHC-----------------------
T ss_pred CCCcceE--CCEEEEcCCCEEE-----------EEECCC-----CCCHHHHHHHHhCCCccC---CCC-cccCCcccCCc
Confidence 4778875 7888999998876 677776 89999999999997 666 478 88888876542
Q ss_pred -ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHH
Q psy2519 100 -FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178 (622)
Q Consensus 100 -~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrq 178 (622)
-.+.+++++|++.+...+||.|+..++..... .+..+..++.+. +..+.++.+ +||||||
T Consensus 60 ~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~~~~--------~sgg~rq 120 (301)
T 2qnr_A 60 VQIEASTVEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYID------EQFERYLHD--------ESGLNRR 120 (301)
T ss_dssp -----CEEEEC---CCEEEEEEEEC----------------CTTHHHHHH------HHHHHHHHH--------HTSSCCT
T ss_pred ceEeeEEEEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHHHHH--------hCHHhhh
Confidence 23568999999888889999999888643210 000011112211 223445444 9999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 179 RLSFATELLTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 179 RvsIA~aL~~~P~lLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
|+.+||+++ ++++||||+ |||+... +.++++.++.+.++|++.||..
T Consensus 121 rv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 121 HIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp TCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred hhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999998885 999999998 5999873 6677776545889999999963
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.67 E-value=1.3e-17 Score=169.49 Aligned_cols=142 Identities=16% Similarity=0.175 Sum_probs=103.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCce-eeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCII-DGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~-~G~I~~~G~~ 95 (622)
.++++++++. ++|++++ + .+|+.++++|+| |||||||+++|+|+.+| . +|+|.++|.+
T Consensus 5 ~~~l~~l~~~------~vl~~i~--i-----~~g~~v~i~Gp~-----GsGKSTll~~l~g~~~~---~~~G~I~~~g~~ 63 (261)
T 2eyu_A 5 IPEFKKLGLP------DKVLELC--H-----RKMGLILVTGPT-----GSGKSTTIASMIDYINQ---TKSYHIITIEDP 63 (261)
T ss_dssp -CCGGGSSCC------THHHHGG--G-----CSSEEEEEECST-----TCSHHHHHHHHHHHHHH---HCCCEEEEEESS
T ss_pred CCChHHCCCH------HHHHHHh--h-----CCCCEEEEECCC-----CccHHHHHHHHHHhCCC---CCCCEEEEcCCc
Confidence 4678888874 4788887 4 467777777776 89999999999999887 4 7999999877
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
+....+..+++++|. .+|+.. .+ +
T Consensus 64 i~~~~~~~~~~v~q~---------------------------------------~~gl~~------~~--------l--- 87 (261)
T 2eyu_A 64 IEYVFKHKKSIVNQR---------------------------------------EVGEDT------KS--------F--- 87 (261)
T ss_dssp CCSCCCCSSSEEEEE---------------------------------------EBTTTB------SC--------H---
T ss_pred ceeecCCcceeeeHH---------------------------------------HhCCCH------HH--------H---
Confidence 532111112222221 122211 11 4
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|++||++|..+|+++++|||| |+.+...++ +. ++ .|.+|++++|+.. +.+.+||++.|..
T Consensus 88 ---~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 ---ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp ---HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred ---HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 899999999999999999999 998866544 33 34 6999999999963 6688999999864
No 96
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.66 E-value=2.1e-17 Score=193.80 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=76.6
Q ss_pred cChHHHHHHHHHHHH--hhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 172 LSGGERKRLSFATEL--LTDPALLLCDEPTTGLDSFSASKL-IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 172 LSgGqrqRvsIA~aL--~~~P~lLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
+|+|++++..+|++| +++|+++||||||+|||+.....+ ..+++.++++.|.|+|++||+. ++.+++|++..+.+
T Consensus 722 lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n 799 (934)
T 3thx_A 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN 799 (934)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE
T ss_pred HhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe
Confidence 888888888888888 999999999999999999999888 7788888864599999999995 56789999999999
Q ss_pred CceEEecChHHH
Q psy2519 249 SRTAFIGSKDAA 260 (622)
Q Consensus 249 G~iv~~G~~~~~ 260 (622)
|++...++.+++
T Consensus 800 g~v~~~~~~~~l 811 (934)
T 3thx_A 800 LHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEETTEE
T ss_pred eEEEEEecCCcE
Confidence 999998877654
No 97
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.63 E-value=1.7e-17 Score=172.26 Aligned_cols=148 Identities=9% Similarity=0.034 Sum_probs=108.5
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-----c-----ccccEEEEecCCCCCCCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-----K-----FRSACGFMYQHDLFSPSLT 118 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-----~-----~r~~igyV~Q~~~l~~~lT 118 (622)
+++.+.++|+| |||||||++.|+|+.+| .+|+|.++|.++.+ + .++.++||+|++.+.|.+|
T Consensus 101 ~g~vi~lvG~n-----GsGKTTll~~Lagll~~---~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~ 172 (304)
T 1rj9_A 101 KGRVVLVVGVN-----GVGKTTTIAKLGRYYQN---LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAAL 172 (304)
T ss_dssp SSSEEEEECST-----TSSHHHHHHHHHHHHHT---TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHH
T ss_pred CCeEEEEECCC-----CCcHHHHHHHHHHHHHh---cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHH
Confidence 45566666665 89999999999999998 48999999998743 1 1456999999999999999
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCC
Q psy2519 119 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198 (622)
Q Consensus 119 V~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEP 198 (622)
|+|++.++..... . ..+++..|+.+..+.. ++..++||++|||+|+.+|+.++|
T Consensus 173 v~~~v~~~~~~~~----d--------~~llDt~G~~~~~~~~-----------~~eLs~~r~~iaRal~~~P~~~lL--- 226 (304)
T 1rj9_A 173 AYDAVQAMKARGY----D--------LLFVDTAGRLHTKHNL-----------MEELKKVKRAIAKADPEEPKEVWL--- 226 (304)
T ss_dssp HHHHHHHHHHHTC----S--------EEEECCCCCCTTCHHH-----------HHHHHHHHHHHHHHCTTCCSEEEE---
T ss_pred HHHHHHHHHhCCC----C--------EEEecCCCCCCchHHH-----------HHHHHHHHHHHHHhhcCCCCeEEE---
Confidence 9999987532110 0 0122334443322222 455569999999999999995554
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 199 TsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
.||+.+..++++.+++++++.|.|+|++||+.
T Consensus 227 --vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 227 --VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp --EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred --EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 56666666777888888765699999999984
No 98
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.63 E-value=1.5e-18 Score=196.55 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=118.1
Q ss_pred CcccCCccccccccceeeeEeee----------eEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVN----------LLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID 86 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~----------l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~ 86 (622)
.++++||++.|.....++++.++ +++ ..++++|+| ||||||||++|+|+..|. .+
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~l--------p~iaIvG~n-----GsGKSTLL~~I~Gl~~P~--~s 74 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLAL--------PAIAVIGDQ-----SSGKSSVLEALSGVALPR--GS 74 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCC--------CCEECCCCT-----TSCHHHHHHHHHSCC-------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccC--------CeEEEECCC-----CChHHHHHHHHhCCCCCC--CC
Confidence 35788999987432234544443 222 247777776 899999999999998772 38
Q ss_pred eEEEECCEecC-------ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCC
Q psy2519 87 GDIRVNGKPVE-------GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 159 (622)
Q Consensus 87 G~I~~~G~~~~-------~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 159 (622)
|+|+++|.++. ..+++.+||++|+..+++.+||+||+.+........ .-++. +
T Consensus 75 G~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~----------------~~~~s---~- 134 (608)
T 3szr_A 75 GIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE----------------GMGIS---H- 134 (608)
T ss_dssp --CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS----------------SSCCC---S-
T ss_pred CeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC----------------ccccc---h-
Confidence 99999999862 146789999999999999999999998864321000 00111 1
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCC------CCCCCHHHHHHHHHHHHHHH-hcCCCEEEEEeccC
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP------TTGLDSFSASKLIRMMRELT-SQRKKTVLCTIHQP 232 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEP------TsgLD~~~~~~i~~~l~~l~-~~~g~tvi~~tH~~ 232 (622)
+++.++.+...+|+++++||| |+|||+..+.++.++++++. +..+.++++++|+.
T Consensus 135 ------------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~ 196 (608)
T 3szr_A 135 ------------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNV 196 (608)
T ss_dssp ------------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSS
T ss_pred ------------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 111122222358999999999 99999999999999999964 33478899999986
Q ss_pred cH---HHHhhc--------cceeeecCCceEEecChHHHHH
Q psy2519 233 SS---ELIDMF--------DKIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 233 ~~---~i~~~~--------D~v~~L~~G~iv~~G~~~~~~~ 262 (622)
.. ++.+++ ..|+++.++.++..|+.+++.+
T Consensus 197 d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 197 DIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp CTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred hhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 31 122222 3478889999998887765543
No 99
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.62 E-value=3.2e-17 Score=164.04 Aligned_cols=159 Identities=9% Similarity=0.012 Sum_probs=102.6
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHh--CCCCCCCceeeEEEECCEecCc---cccccEEEEecCCCCCCCCCHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFL--SQVIDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 122 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~--g~~~~~~~~~G~I~~~G~~~~~---~~r~~igyV~Q~~~l~~~lTV~E~ 122 (622)
.+|+.++++|+| |||||||+++|+ |+..+ .+|.+.+++.+... ...+.+|+++|+....+.+++.++
T Consensus 28 ~~G~~~~l~Gpn-----GsGKSTLl~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 99 (251)
T 2ehv_A 28 PEGTTVLLTGGT-----GTGKTTFAAQFIYKGAEEY---GEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDG 99 (251)
T ss_dssp ETTCEEEEECCT-----TSSHHHHHHHHHHHHHHHH---CCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-
T ss_pred CCCcEEEEEeCC-----CCCHHHHHHHHHHHHHHhC---CCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEc
Confidence 367777777776 899999999999 66343 25777777765433 234567888887655566666554
Q ss_pred HHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q psy2519 123 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202 (622)
Q Consensus 123 l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgL 202 (622)
........ ..... ..... .+-++..+...+..-..+|+++++||||++|
T Consensus 100 ~~~~~~~~----------~~~~~-------------~~~~~--------~~~~~~~~~~~~~l~~~~p~~lilDep~~~l 148 (251)
T 2ehv_A 100 VSSVVGLP----------SEEKF-------------VLEDR--------FNVDNFLRYIYRVVKAINAKRLVIDSIPSIA 148 (251)
T ss_dssp -------------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHH
T ss_pred cccccccc----------cccce-------------eccCc--------ccHHHHHHHHHHHHHhhCCCEEEEccHHHHH
Confidence 32211000 00000 00001 3445555444444456899999999999999
Q ss_pred C-----HHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH---------Hhhc-cceeeec
Q psy2519 203 D-----SFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL---------IDMF-DKIILLA 247 (622)
Q Consensus 203 D-----~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i---------~~~~-D~v~~L~ 247 (622)
| +..+..+.++++++++ .|+|||++||++ .++ ..+| |++++|+
T Consensus 149 d~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~-~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 149 LRLEEERKIREVLLKLNTILLE-MGVTTILTTEAP-DPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCC-CCCcccccccChhhEeeeEEEEEe
Confidence 7 6777779999999987 699999999996 455 5788 9999995
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.62 E-value=1.1e-18 Score=171.05 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=112.6
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCC--CCCCHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS--PSLTVYEHLYF 125 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~--~~lTV~E~l~f 125 (622)
++++.+.++|+| |||||||+++|+|++.| .++|++|++.++ +.+|++++..+
T Consensus 4 ~~~~~i~i~G~~-----GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~ 57 (211)
T 3asz_A 4 PKPFVIGIAGGT-----ASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRV 57 (211)
T ss_dssp -CCEEEEEEEST-----TSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHS
T ss_pred CCcEEEEEECCC-----CCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCC
Confidence 455667777776 89999999999997643 489999998776 67899998655
Q ss_pred HHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH----HHHHHHHHHhhCCCeEEEeCCCCC
Q psy2519 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER----KRLSFATELLTDPALLLCDEPTTG 201 (622)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr----qRvsIA~aL~~~P~lLlLDEPTsg 201 (622)
.. ..+... ..+++.+.++.+++.+..+.++.+ +|+||| ||+++|++++.+|.++++||||++
T Consensus 58 ~~--~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~--------~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~ 123 (211)
T 3asz_A 58 NY--DHPDAF----DLALYLEHAQALLRGLPVEMPVYD--------FRAYTRSPRRTPVRPAPVVILEGILVLYPKELRD 123 (211)
T ss_dssp CT--TSGGGB----CHHHHHHHHHHHHTTCCEEECCEE--------TTTTEECSSCEEECCCSEEEEESTTTTSSHHHHT
T ss_pred CC--CChhhh----hHHHHHHHHHHHHcCCCcCCCccc--------CcccCCCCCeEEeCCCcEEEEeehhhccCHHHHH
Confidence 32 111111 234566788888887766665544 999964 788999999999999999999999
Q ss_pred -------CCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 202 -------LDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 202 -------LD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
||+.....+.+.+++..++.|.|++.++|+.
T Consensus 124 ~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 124 LMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred hcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999887554799999999974
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.61 E-value=2.2e-17 Score=193.15 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=67.4
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHhhccceee-ecCC
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL-LADS 249 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~-L~~G 249 (622)
+|+||+|++.|+++ +.+|+++||||||+|||+.....+. .+++.++++.|.|+|++||++ ++.+++|+.-- +.++
T Consensus 736 fs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~n~ 812 (918)
T 3thx_B 736 FMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVGNY 812 (918)
T ss_dssp HHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEEEE
T ss_pred hhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceEEE
Confidence 99999999999999 8999999999999999999999997 888888765699999999995 55678887642 4555
Q ss_pred ceEE
Q psy2519 250 RTAF 253 (622)
Q Consensus 250 ~iv~ 253 (622)
++.+
T Consensus 813 ~~~~ 816 (918)
T 3thx_B 813 HMGF 816 (918)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 102
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.60 E-value=1.4e-16 Score=157.44 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=94.8
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC----ceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC----IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHL 123 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~----~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l 123 (622)
.+|+.+.++|+| |||||||+++|+|...+.. ...|.+++++++.. .++.+++++|+..+.+. |+.||+
T Consensus 23 ~~G~~~~l~G~n-----GsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~ 94 (231)
T 4a74_A 23 ETQAITEVFGEF-----GSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHI 94 (231)
T ss_dssp ESSEEEEEEEST-----TSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--CHHHHHHHHHHTTSCHH-HHHHTE
T ss_pred CCCcEEEEECCC-----CCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--CHHHHHHHHHHcCCCHH-HHhhcE
Confidence 356777777776 8999999999999554310 12446777665421 12234445554444333 444443
Q ss_pred HHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH-HHHHHHHHHHhh-------CCCeEEE
Q psy2519 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE-RKRLSFATELLT-------DPALLLC 195 (622)
Q Consensus 124 ~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq-rqRvsIA~aL~~-------~P~lLlL 195 (622)
.+.. . .++++ ++++..+.+++. +|+++++
T Consensus 95 ~~~~-----------------------------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llil 131 (231)
T 4a74_A 95 YVAR-----------------------------------A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 131 (231)
T ss_dssp EEEE-----------------------------------C--------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEE
T ss_pred EEEe-----------------------------------c--------CChHHHHHHHHHHHHHHHHhcccCCceeEEEE
Confidence 2210 0 23332 222444455544 8999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHhcCCCEEEEEeccCc---HHHHhhccceeeecCCc
Q psy2519 196 DEPTTGLDSFS------------ASKLIRMMRELTSQRKKTVLCTIHQPS---SELIDMFDKIILLADSR 250 (622)
Q Consensus 196 DEPTsgLD~~~------------~~~i~~~l~~l~~~~g~tvi~~tH~~~---~~i~~~~D~v~~L~~G~ 250 (622)
||||+++|+.. ..++++.|++++++.|+|||+++|+.. ..+.+.+|++++|++|+
T Consensus 132 De~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 132 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99999999842 347888899988767999999999532 24788899999998764
No 103
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.58 E-value=3.6e-15 Score=141.98 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=67.0
Q ss_pred cccChHHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 170 VVLSGGERKRLSFATELLTD----PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~----P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
..||||||||++||++|+.+ |++++|||||+|||+.++..+.+.|+++++ +.++|++||+. ...+.||+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCCEEEE
Confidence 34999999999999999854 699999999999999999999999999975 46899999984 56789999986
Q ss_pred ec--CCc
Q psy2519 246 LA--DSR 250 (622)
Q Consensus 246 L~--~G~ 250 (622)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 554
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.56 E-value=4.8e-16 Score=179.33 Aligned_cols=162 Identities=16% Similarity=0.059 Sum_probs=109.6
Q ss_pred cCCcccCCccccccc-cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC-CCCceeeEEEEC
Q psy2519 15 KNNEEVPNVDFSEIV-GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI-DDCIIDGDIRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~-g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~-~~~~~~G~I~~~ 92 (622)
++.+++++...-... ++..++++++++ |+.++|+|+| |||||||||+|+|+.. + ..|.+.
T Consensus 548 ~~~i~i~~~rHP~le~~~~~vl~disl~--------g~i~~I~GpN-----GsGKSTlLr~iagl~~~~---~~G~~v-- 609 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFVPNDLEMA--------HELVLITGPN-----MAGKSTFLRQTALIALLA---QVGSFV-- 609 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCCCEEEEES--------SCEEEEESCS-----SSSHHHHHHHHHHHHHHH---TTTCCB--
T ss_pred CCcEEEEEeECceEccCCceEeeeccCC--------CcEEEEECCC-----CCChHHHHHHHHhhhhhc---ccCcee--
Confidence 445555555443211 456678888764 5566677776 8999999999999864 3 245432
Q ss_pred CEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 93 GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
. ..+..+|+++| +++.+++.||+.. |+
T Consensus 610 ----p-a~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------------g~ 636 (765)
T 1ewq_A 610 ----P-AEEAHLPLFDG---IYTRIGASDDLAG---------------------------------------------GK 636 (765)
T ss_dssp ----S-SSEEEECCCSE---EEEECCC---------------------------------------------------CC
T ss_pred ----e-hhccceeeHHH---hhccCCHHHHHHh---------------------------------------------cc
Confidence 1 12346788776 4555666554311 28
Q ss_pred ChHHHHHHHHHHHH--hhCCCeEEEeCC---CCCCCHHHH-HHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 173 SGGERKRLSFATEL--LTDPALLLCDEP---TTGLDSFSA-SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 173 SgGqrqRvsIA~aL--~~~P~lLlLDEP---TsgLD~~~~-~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|+||++++.+|+++ +++|+++||||| |++||+.+. ..+.+.|++ .|.|+|++||++ +..+++ .--+
T Consensus 637 S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~--~~~v 708 (765)
T 1ewq_A 637 STFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG--LPRL 708 (765)
T ss_dssp SHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC--CTTE
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh--hhcc
Confidence 99999999999999 999999999999 999999875 467777765 478999999995 455555 2233
Q ss_pred cCCceEEec
Q psy2519 247 ADSRTAFIG 255 (622)
Q Consensus 247 ~~G~iv~~G 255 (622)
.++++....
T Consensus 709 ~n~~~~~~~ 717 (765)
T 1ewq_A 709 KNLHVAARE 717 (765)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEEE
Confidence 455555443
No 105
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.56 E-value=4e-15 Score=165.70 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=69.9
Q ss_pred cccc-ChHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 169 KVVL-SGGERKRLSFATELLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 169 ~~gL-SgGqrqRvsIA~aL~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||+|||++ . +...||++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~-~-~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA-Q-IAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH-H-HHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-H-HHHhCCEEEE
Confidence 3447 999999999999999999 99999999999999999999999999985 79999999996 3 4567999999
Q ss_pred ecCC
Q psy2519 246 LADS 249 (622)
Q Consensus 246 L~~G 249 (622)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.53 E-value=7.7e-17 Score=155.92 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=102.7
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--cccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
|+.+.++|+| |||||||+++|+|+++ + +| |.++|.+... ..++.+||++|+. ... ++++ +
T Consensus 1 G~~i~i~G~n-----G~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~ 62 (189)
T 2i3b_A 1 ARHVFLTGPP-----GVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---S 62 (189)
T ss_dssp CCCEEEESCC-----SSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---E
T ss_pred CCEEEEECCC-----CChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---h
Confidence 3456777776 8999999999999987 3 68 9999987754 4678899999974 111 1111 0
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHH-HHHH---HHhhCCCeEEEeC--CCC
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRL-SFAT---ELLTDPALLLCDE--PTT 200 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRv-sIA~---aL~~~P~lLlLDE--PTs 200 (622)
++.. +..+ ..+..++. ....+|+|||+++ ++++ |++.+|+++|+|| ||.
T Consensus 63 ~~~~--------------------~~~~~~~~~~v~~----~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~ 118 (189)
T 2i3b_A 63 RVGL--------------------EPPPGKRECRVGQ----YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKME 118 (189)
T ss_dssp ECCC--------------------CCCSSSCCEESSS----SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTT
T ss_pred cccc--------------------cCCccccccccce----EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccc
Confidence 1110 0011 01113332 1234999999988 4454 6799999999999 899
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEE----EeccCcHHHHhhccceeeecCCceEEec
Q psy2519 201 GLDSFSASKLIRMMRELTSQRKKTVLC----TIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 201 gLD~~~~~~i~~~l~~l~~~~g~tvi~----~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
.+|+.....+. ++.+ ...++|+ ++|+.+ ..+.|+|..+.+|+++...
T Consensus 119 ~~~~~~~~~l~----~~l~-~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 119 LFSQLFIQAVR----QTLS-TPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp TTCSHHHHHHH----HHHH-CSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred cccHHHHHHHH----HHHh-CCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 99987554444 4444 2344553 338852 3577899888999998744
No 107
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.52 E-value=1.9e-14 Score=147.28 Aligned_cols=149 Identities=10% Similarity=0.002 Sum_probs=102.6
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
.+|+.+.+.|+| |||||||++.+++... .|++. .|.+... +..+.|+..++.. ..+.+.+.
T Consensus 28 ~~G~i~~i~G~~-----GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~--- 88 (279)
T 1nlf_A 28 VAGTVGALVSPG-----GAGKSMLALQLAAQIA-----GGPDL-LEVGELP--TGPVIYLPAEDPP---TAIHHRLH--- 88 (279)
T ss_dssp ETTSEEEEEEST-----TSSHHHHHHHHHHHHH-----TCCCT-TCCCCCC--CCCEEEEESSSCH---HHHHHHHH---
T ss_pred cCCCEEEEEcCC-----CCCHHHHHHHHHHHHh-----cCCCc-CCCccCC--CccEEEEECCCCH---HHHHHHHH---
Confidence 356566666665 8999999999998654 35553 3544321 3467888776532 01112211
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCC--CCCHH
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT--GLDSF 205 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTs--gLD~~ 205 (622)
.+.. .... ...+++++.+++.+..+..+.. ||+||+|++ ++++.+|+++++||||+ ++|+.
T Consensus 89 ~~g~--~~~~----~~~~~~~~~l~l~~~~~~~~~~--------ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~ 151 (279)
T 1nlf_A 89 ALGA--HLSA----EERQAVADGLLIQPLIGSLPNI--------MAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEEN 151 (279)
T ss_dssp HHHT--TSCH----HHHHHHHHHEEECCCTTSCCCT--------TSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTT
T ss_pred HHHh--hcCh----hhhhhccCceEEeecCCCCccc--------CCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcC
Confidence 1111 1111 2345678888888777766555 999998875 68889999999999999 99985
Q ss_pred HH---HHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 206 SA---SKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 206 ~~---~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
.. .++++.|++++++.|+|||+++|+.
T Consensus 152 ~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 152 ASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred chHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 44 8899999999866799999999985
No 108
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.3e-15 Score=164.48 Aligned_cols=163 Identities=11% Similarity=0.027 Sum_probs=97.3
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||++.| |+..+++++++++ +++|+| |||||||+++|+|...+.. ..|.+.+++.+
T Consensus 10 ~~l~~~~l~~~y--~~~~vl~~vsf~I-----------~lvG~s-----GaGKSTLln~L~g~~~~~~-~~~~~~~~~~~ 70 (418)
T 2qag_C 10 GYVGFANLPNQV--YRKSVKRGFEFTL-----------MVVGES-----GLGKSTLINSLFLTDLYSP-EYPGPSHRIKK 70 (418)
T ss_dssp -----CCCCCCT--TTTTCC-CCCEEE-----------EEECCT-----TSSHHHHHHHHTTCCCCCC-CCCSCC-----
T ss_pred CcEEEEecceeE--CCEEEecCCCEEE-----------EEECCC-----CCcHHHHHHHHhCCCCCCC-CCCCcccCCcc
Confidence 458899999986 6778999999876 667665 8999999999999987421 12222222211
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
...++.+++++|++.+++.+||.||+.++..... .+....+.+.++. . ++.+
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------~~~~~~i~~~i~~---------~-----------~~~~ 122 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------SNCWQPVIDYIDS---------K-----------FEDY 122 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHHH---------H-----------HHHH
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhccc------hhhHHHHHHHHHH---------H-----------HHHH
Confidence 1123568999999988899999999988643211 1111112222221 1 7788
Q ss_pred HHHHHHHHHHHhhCCC---eEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 176 ERKRLSFATELLTDPA---LLLCDEPT-TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~---lLlLDEPT-sgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
++||++|||+++.+|+ +|++|||| .|||+... ++++++.. +.++|+++|-
T Consensus 123 l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 123 LNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp TTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred HHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 8999999999999999 99999999 69999873 45566643 6788888775
No 109
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.50 E-value=1.8e-16 Score=154.39 Aligned_cols=175 Identities=13% Similarity=0.024 Sum_probs=94.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC-----CCCCceeeEEEE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV-----IDDCIIDGDIRV 91 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~-----~~~~~~~G~I~~ 91 (622)
+++++||+|.| + .+++++ +.+ .++..++++|++ |||||||+|.|+|.. .| ..|++.+
T Consensus 3 ~l~~~~~~~~~--~-~~~l~~--~~~-----~~~~~v~lvG~~-----g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVM--S-APDIRH--LPS-----DTGIEVAFAGRS-----NAGKSSALNTLTNQKSLARTSK---TPGRTQL 64 (210)
T ss_dssp --------CEE--E-ESSGGG--SSC-----SCSEEEEEEECT-----TSSHHHHHTTTCCC----------------CC
T ss_pred chhhhhhhhee--e-cCCHhH--CCC-----CCCcEEEEECCC-----CCCHHHHHHHHhCCCccccccC---CCcccee
Confidence 47899999997 3 355655 444 456677888776 799999999999987 44 3566543
Q ss_pred CCEecCccccccEEEEecCCCC----CCCCC---HHHHHHHHHHc-CC----------CccccHHHHHHHHHHHHHHhCC
Q psy2519 92 NGKPVEGKFRSACGFMYQHDLF----SPSLT---VYEHLYFMALL-KL----------DRRVKAYQRIALINSLLIELGL 153 (622)
Q Consensus 92 ~G~~~~~~~r~~igyV~Q~~~l----~~~lT---V~E~l~f~~~l-~~----------~~~~~~~~~~~~v~~~l~~lgL 153 (622)
.+.-. ....+-++ +.+.+ .+.-. .+..+...... .. ....+. ..+.+.++++..++
T Consensus 65 ~~~~~---~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~ 138 (210)
T 1pui_A 65 INLFE---VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNI 138 (210)
T ss_dssp EEEEE---EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTC
T ss_pred eEEEE---ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCC
Confidence 22100 00001010 10100 00000 11122221110 00 000111 12334566777777
Q ss_pred Ccc-cCCccCCcCCCCccccChHHHHH-HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCE
Q psy2519 154 MNS-QHTRIGSSSITQKVVLSGGERKR-LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224 (622)
Q Consensus 154 ~~~-~~~~v~~~~~~~~~gLSgGqrqR-vsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~t 224 (622)
... ..+++.. +|+||||| +..+++++.+|+++++|||||++|.....++.+.|.++.+ +|.|
T Consensus 139 ~~~~v~nK~D~--------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~-~~~~ 202 (210)
T 1pui_A 139 AVLVLLTKADK--------LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS-EMQP 202 (210)
T ss_dssp CEEEEEECGGG--------SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred CeEEEEecccC--------CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh-hccc
Confidence 643 2455555 99999999 8999999999999999999999999999999999999876 4543
No 110
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.50 E-value=1.3e-15 Score=161.21 Aligned_cols=158 Identities=14% Similarity=0.088 Sum_probs=96.4
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCC-ceeeE-EEECCEecCccccccEEEEecCCCCCCCCCHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDC-IIDGD-IRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHL 123 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~-~~~G~-I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l 123 (622)
.+|+.+.+.|+| |||||||++.|++.. +|+. ...|+ |++++++.. .++++++++|+..+++. ++.||+
T Consensus 129 ~~G~i~~I~G~~-----GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~v~~ni 200 (349)
T 1pzn_A 129 ETQAITEVFGEF-----GSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHI 200 (349)
T ss_dssp ESSEEEEEEEST-----TSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-HHGGGE
T ss_pred CCCeEEEEECCC-----CCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-HHhhCE
Confidence 355566666665 899999999999987 4420 01367 888887541 23556777776655443 555554
Q ss_pred HHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHh-------hCCCeEEEe
Q psy2519 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-------TDPALLLCD 196 (622)
Q Consensus 124 ~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~-------~~P~lLlLD 196 (622)
.+... . -|.+|+|++.++++++ .+|+++++|
T Consensus 201 ~~~~~------~------------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD 238 (349)
T 1pzn_A 201 YVARA------F------------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD 238 (349)
T ss_dssp EEEEC------C------------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE
T ss_pred EEEec------C------------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence 33210 0 1233444444444444 789999999
Q ss_pred CCCCCCCHHH------------HHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecC
Q psy2519 197 EPTTGLDSFS------------ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 197 EPTsgLD~~~------------~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
|||+++|+.. ..++++.|++++++.|+|||+++|.. ......++.......|+++.++.
T Consensus 239 s~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~-~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 239 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ-ARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp TSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred CchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc-cccccccCCccccCCcceEeecC
Confidence 9999999852 46777888888877799999999985 45544556666777787776654
No 111
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.49 E-value=5.7e-15 Score=171.30 Aligned_cols=160 Identities=16% Similarity=0.064 Sum_probs=107.2
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEec
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQ 109 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q 109 (622)
|+..++++++++ ++|+.++++|+| |||||||||+|+|..... ..| ..+.. .+..++++.|
T Consensus 593 ~~~~vlndisl~------~~g~i~~ItGpN-----GsGKSTlLr~iagl~~~~--q~G------~~vpa-~~~~i~~~~~ 652 (800)
T 1wb9_A 593 NEPFIANPLNLS------PQRRMLIITGPN-----MGGKSTYMRQTALIALMA--YIG------SYVPA-QKVEIGPIDR 652 (800)
T ss_dssp SSCCCCEEEEEC------SSSCEEEEECCT-----TSSHHHHHHHHHHHHHHH--TTT------CCBSS-SEEEECCCCE
T ss_pred CCceeeeccccc------CCCcEEEEECCC-----CCChHHHHHHHHHHHHHH--hcC------cccch-hcccceeHHH
Confidence 445577777764 256667777776 899999999999975321 112 22211 1234666655
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhC
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~ 189 (622)
+++.+++.|++..+ ..+ +|++|++ ++.+..++++
T Consensus 653 ---i~~~~~~~d~l~~~----------------------------------~st--------f~~e~~~-~~~il~~a~~ 686 (800)
T 1wb9_A 653 ---IFTRVGAADDLASG----------------------------------RST--------FMVEMTE-TANILHNATE 686 (800)
T ss_dssp ---EEEEEC-----------------------------------------------------CHHHHHH-HHHHHHHCCT
T ss_pred ---HHhhCCHHHHHHhh----------------------------------hhh--------hhHHHHH-HHHHHHhccC
Confidence 45555665554221 112 6777764 4445557899
Q ss_pred CCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecCh
Q psy2519 190 PALLLCDEPTTGLDSFSASKL-IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257 (622)
Q Consensus 190 P~lLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 257 (622)
|+++|||||++|+|+.....+ .++++.++++.|.++|++||++ ++.+++|++..+.+|++.+....
T Consensus 687 psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 687 YSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp TEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEET
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcC
Confidence 999999999999999888876 7889999874589999999996 45579999988999988776543
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.48 E-value=2.9e-15 Score=147.77 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=67.2
Q ss_pred cChHHHHHHHHHHHHhhCCC--eEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCCEEEEEeccCc-------HHHHhhc
Q psy2519 172 LSGGERKRLSFATELLTDPA--LLLCDEPTTGL--DSFSASKLIRMMRELTSQRKKTVLCTIHQPS-------SELIDMF 240 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~--lLlLDEPTsgL--D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~-------~~i~~~~ 240 (622)
.|.+|.++...+.....+|+ ++++||||+++ |+..+.++++.|++++++.|.|||+++|+.. ..+.++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 69999999888888888999 99999999887 9999999999999998767999999999962 3488899
Q ss_pred cceeeecCC
Q psy2519 241 DKIILLADS 249 (622)
Q Consensus 241 D~v~~L~~G 249 (622)
|++++|+..
T Consensus 184 d~vi~l~~~ 192 (235)
T 2w0m_A 184 DGIIRFRRM 192 (235)
T ss_dssp SEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 999999754
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.45 E-value=3.3e-14 Score=150.55 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=85.0
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
.++|.++++|+| ||||||||++|+|++++. ..|.|...+.++....+...+++.|.......
T Consensus 121 ~~~g~i~I~Gpt-----GSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~----------- 182 (356)
T 3jvv_A 121 VPRGLVLVTGPT-----GSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRDT----------- 182 (356)
T ss_dssp CSSEEEEEECST-----TSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB-----------
T ss_pred CCCCEEEEECCC-----CCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeecccc-----------
Confidence 356666666665 899999999999998872 14666544433322223333444443211111
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 207 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~ 207 (622)
++-.+ +||++|..+|++|++|||| |+.+
T Consensus 183 --------------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~- 210 (356)
T 3jvv_A 183 --------------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLET- 210 (356)
T ss_dssp --------------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHH-
T ss_pred --------------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHH-
Confidence 22222 8999999999999999999 6554
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 208 SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 208 ~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
.+.+.+.++ .|.||++|+|+.+ .+ +.+||++.|..|
T Consensus 211 ---~~~~~~~~~-~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 211 ---IRLALTAAE-TGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp ---HHHHHHHHH-TTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred ---HHHHHHHHh-cCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 444455565 6999999999973 44 789999999655
No 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.42 E-value=3e-16 Score=150.99 Aligned_cols=170 Identities=14% Similarity=0.135 Sum_probs=110.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 131 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~ 131 (622)
.++++|+| |||||||+++|++ + .+|++.++|.++... ...|+++|.....+.+|+++++.+.+....
T Consensus 4 ii~l~G~~-----GaGKSTl~~~L~~---~---~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 70 (189)
T 2bdt_A 4 LYIITGPA-----GVGKSTTCKRLAA---Q---LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNFL 70 (189)
T ss_dssp EEEEECST-----TSSHHHHHHHHHH---H---SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCC-----CCcHHHHHHHHhc---c---cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHHH
Confidence 34556565 8999999999997 3 368999998765432 235677776655566788888877543211
Q ss_pred CccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc--ChHHHHHHHHHH------HHhhCCCeEEEeCCCCCCC
Q psy2519 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL--SGGERKRLSFAT------ELLTDPALLLCDEPTTGLD 203 (622)
Q Consensus 132 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL--SgGqrqRvsIA~------aL~~~P~lLlLDEPTsgLD 203 (622)
... ...+++.+. .....+.+ +.+ |+||+|++.++. +++.+|+...+|| +||
T Consensus 71 ~~~---------~~~ild~~~-~~~~~~~~--------~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld 129 (189)
T 2bdt_A 71 LAQ---------NDVVLDYIA-FPDEAEAL--------AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMG 129 (189)
T ss_dssp HTT---------CEEEEESCC-CHHHHHHH--------HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------C
T ss_pred hcC---------CcEEEeecc-CHHHHHHH--------HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCC
Confidence 000 000011000 00000011 125 889998988888 9999999988884 899
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecc-CcHHHHhhccceeeecCCceEEecChHHH
Q psy2519 204 SFSASKLIRMMRELTSQRKKTVLCTIHQ-PSSELIDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 204 ~~~~~~i~~~l~~l~~~~g~tvi~~tH~-~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
+..... .+.++++.+ .+.++|.++|+ + +++.+.||+|+ ++|+++..|+++.+
T Consensus 130 ~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~-~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 130 ERCLEL-VEEFESKGI-DERYFYNTSHLQP-TNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GGGGHH-HHHHHHTTC-CTTSEEECSSSCG-GGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHHHH-HHHHhhcCC-CccEEEeCCCCCh-hhHHHHHHHHh--hCCcEEEeecCCch
Confidence 998888 888888865 57899999998 6 57889999999 99999999998754
No 115
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.41 E-value=4e-13 Score=143.33 Aligned_cols=76 Identities=33% Similarity=0.465 Sum_probs=66.8
Q ss_pred ccChHHHHHH------HHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 171 VLSGGERKRL------SFATELLTD-PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 171 gLSgGqrqRv------sIA~aL~~~-P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
.||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||++||++ ++...+|++
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~~d~~ 355 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHR--ELEDVADVI 355 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCG--GGGGGCSEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChH--HHHhhCCEE
Confidence 4999999988 567889999 999999999999999999999999999753 46899999996 467899999
Q ss_pred eeec-CCc
Q psy2519 244 ILLA-DSR 250 (622)
Q Consensus 244 ~~L~-~G~ 250 (622)
++++ +|.
T Consensus 356 ~~l~k~~~ 363 (371)
T 3auy_A 356 INVKKDGN 363 (371)
T ss_dssp EEEEESSS
T ss_pred EEEEecCC
Confidence 9997 443
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.38 E-value=2.2e-14 Score=141.87 Aligned_cols=146 Identities=12% Similarity=0.056 Sum_probs=101.1
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCH----HHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTV----YEHL 123 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV----~E~l 123 (622)
.+|+.++++|+| |||||||+++|+|+.+|+ ..+|.|.+.+++.....++.++|+||++.+++.+|+ .|++
T Consensus 14 ~~G~ii~l~Gps-----GsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 14 AQGTLYIVSAPS-----GAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp -CCCEEEEECCT-----TSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEECCC-----CCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 456677777665 899999999999999862 268999999987654446679999998766555554 3332
Q ss_pred HHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q psy2519 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203 (622)
Q Consensus 124 ~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD 203 (622)
.+....+ |.| +++ +.+++..++++||| ||
T Consensus 88 ~~~~~~y----------------------------------------g~~---~~~---v~~~l~~G~illLD-----LD 116 (219)
T 1s96_A 88 EVFGNYY----------------------------------------GTS---REA---IEQVLATGVDVFLD-----ID 116 (219)
T ss_dssp EETTEEE----------------------------------------EEE---HHH---HHHHHTTTCEEEEE-----CC
T ss_pred HHHhccC----------------------------------------CCC---HHH---HHHHHhcCCeEEEE-----EC
Confidence 2211110 111 111 23444557999999 99
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHHHH
Q psy2519 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 265 (622)
Q Consensus 204 ~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~~ 265 (622)
+..+.++.+.+. .+.||++++|++ +++.+ |+ +.+| .++++++..-+.
T Consensus 117 ~~~~~~i~~~l~-----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 117 WQGAQQIRQKMP-----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHHHHHHCT-----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHHHHHHHcc-----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHHH
Confidence 999999999875 489999999996 45543 53 6777 678887765543
No 117
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.36 E-value=1e-12 Score=142.95 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=67.9
Q ss_pred ccChHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 171 VLSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
.||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+ .|.++|++||++ ...+.||+++.+
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCH--HHHHhCCEEEEE
Confidence 49999999999999999 57999999999999999999999999999875 588999999994 567889999999
Q ss_pred c
Q psy2519 247 A 247 (622)
Q Consensus 247 ~ 247 (622)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 118
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.36 E-value=1.3e-13 Score=146.52 Aligned_cols=154 Identities=10% Similarity=0.034 Sum_probs=111.0
Q ss_pred ccCCcccc---ccccceeee---------EeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee
Q psy2519 19 EVPNVDFS---EIVGSVQVY---------AIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID 86 (622)
Q Consensus 19 ~~~~~~~~---~~~g~~~~l---------~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~ 86 (622)
++++++|+ |+..+.++| +++++.+ ++|+.++++|++ |||||||+++|+|+.+| .+
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i-----~~G~~i~ivG~s-----GsGKSTll~~l~~~~~~---~~ 203 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAV-----QLERVIVVAGET-----GSGKTTLMKALMQEIPF---DQ 203 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHH-----HTTCCEEEEESS-----SSCHHHHHHHHHTTSCT---TS
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHH-----hcCCEEEEECCC-----CCCHHHHHHHHHhcCCC---Cc
Confidence 89999998 743233455 8889888 677788888776 89999999999999998 48
Q ss_pred eEEEECCEec-Cc-cccccEEEEe-cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCC
Q psy2519 87 GDIRVNGKPV-EG-KFRSACGFMY-QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 163 (622)
Q Consensus 87 G~I~~~G~~~-~~-~~r~~igyV~-Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~ 163 (622)
|.|.++|.+- .. ..++.++|++ |++.+ .
T Consensus 204 g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------------------------------------------------~ 234 (361)
T 2gza_A 204 RLITIEDVPELFLPDHPNHVHLFYPSEAKE-------------------------------------------------E 234 (361)
T ss_dssp CEEEEESSSCCCCTTCSSEEEEECC-------------------------------------------------------
T ss_pred eEEEECCccccCccccCCEEEEeecCcccc-------------------------------------------------c
Confidence 9999998531 11 2567889998 54431 0
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
++++..+|..|+.++..+|+.+++|||+. .++.+.++.+.. .+.|++.++|.. .....+||+
T Consensus 235 --------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~--~~~~~~~Rl 296 (361)
T 2gza_A 235 --------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAG--SCELTFERL 296 (361)
T ss_dssp ------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECS--SHHHHHHHH
T ss_pred --------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCC--CHHHHHHHH
Confidence 12223356666777777899999999986 356677777764 456889999985 367889999
Q ss_pred eeecCCceE
Q psy2519 244 ILLADSRTA 252 (622)
Q Consensus 244 ~~L~~G~iv 252 (622)
..+..|...
T Consensus 297 ~~l~~~~~~ 305 (361)
T 2gza_A 297 ALMVLQNRQ 305 (361)
T ss_dssp HHHHTTSTT
T ss_pred HHHHhcccc
Confidence 999887543
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.36 E-value=1.6e-16 Score=169.29 Aligned_cols=162 Identities=9% Similarity=-0.015 Sum_probs=101.0
Q ss_pred EeeeeEEEEcccCC--CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee----eEEEEC----CEecCc---cccc
Q psy2519 36 AIVNLLVIMDQTAS--TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID----GDIRVN----GKPVEG---KFRS 102 (622)
Q Consensus 36 ~~v~l~~~~~~~~~--~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~----G~I~~~----G~~~~~---~~r~ 102 (622)
+.|++++ .+ +++.+++|+| |||||||+++|+|+.+| .+ |+|.++ |.+... ++ +
T Consensus 159 ~~v~~~v-----~~~lg~k~~IvG~n-----GsGKSTLlk~L~gl~~~---~~~~e~G~i~i~~~~~~~~~~~~~~~~-~ 224 (365)
T 1lw7_A 159 KFIPKEA-----RPFFAKTVAILGGE-----SSGKSVLVNKLAAVFNT---TSAWEYGREFVFEKLGGDEQAMQYSDY-P 224 (365)
T ss_dssp GGSCTTT-----GGGTCEEEEEECCT-----TSHHHHHHHHHHHHTTC---EEECCTTHHHHHHSSSSCTTSSCTTTH-H
T ss_pred hhCCHHH-----HHhhhCeEEEECCC-----CCCHHHHHHHHHHHhCC---CcchhhHHHHHHhhcCCCcccCChhHH-H
Confidence 3455555 45 6788888776 89999999999999988 46 776653 222210 11 2
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHH
Q psy2519 103 ACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSF 182 (622)
Q Consensus 103 ~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsI 182 (622)
.+++++|+..++ ..|+.||+.+. + .+..++.+.. +|+|++||..+
T Consensus 225 ~I~~~~q~~~~~-~~t~~~nl~~~-------------------------~-~~~~~~~~~~--------~~~~~~~~~~i 269 (365)
T 1lw7_A 225 QMALGHQRYIDY-AVRHSHKIAFI-------------------------D-TDFITTQAFC--------IQYEGKAHPFL 269 (365)
T ss_dssp HHHHHHHHHHHH-HHHHCSSEEEE-------------------------S-SCHHHHHHHH--------HHHHSCCCHHH
T ss_pred HHHHHHHHHHHH-HHhccCCEEEE-------------------------e-CCchHHHHHH--------HHHcCCCCHHH
Confidence 233333322111 11222222110 0 0011111111 67777888888
Q ss_pred HHHHh-hCCCeEEEeC---CC------CCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 183 ATELL-TDPALLLCDE---PT------TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 183 A~aL~-~~P~lLlLDE---PT------sgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
++++. .+|++++||| |+ .++|+..+..+.+.|+++.++.|.+|++++|. . +..+++|++.++++
T Consensus 270 ~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 270 DSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK 343 (365)
T ss_dssp HHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH
Confidence 88775 5999999999 65 58999999999999999876568999999986 2 66778888877753
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.34 E-value=2.2e-15 Score=144.72 Aligned_cols=149 Identities=9% Similarity=-0.040 Sum_probs=94.9
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--cccccEEEEecCCCCCCCCCHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYF 125 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f 125 (622)
.+|+.++++|+| |||||||+++|+|+ + ..|.|.++|.++.. ..++.++|++|+.. +.+||.|++.+
T Consensus 7 ~~g~~i~l~G~~-----GsGKSTl~~~La~~--~---~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~ 74 (191)
T 1zp6_A 7 LGGNILLLSGHP-----GSGKSTIAEALANL--P---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAAD 74 (191)
T ss_dssp CTTEEEEEEECT-----TSCHHHHHHHHHTC--S---SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHH
T ss_pred CCCeEEEEECCC-----CCCHHHHHHHHHhc--c---CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHH
Confidence 456666777766 89999999999998 3 27999999987643 22345688888654 46789999877
Q ss_pred HHHcCCCccccHHHHHHHHHHHHHHhCCCccc--CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q psy2519 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQ--HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203 (622)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD 203 (622)
.+........ ...++.+++..++.... +..+.. +|+|++||+.++|++..+|+++ +|
T Consensus 75 ~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~--------ls~~~~~~v~~~R~~~r~~~~l--------ld 133 (191)
T 1zp6_A 75 VAGRYAKEGY-----FVILDGVVRPDWLPAFTALARPLHY--------IVLRTTAAEAIERCLDRGGDSL--------SD 133 (191)
T ss_dssp HHHHHHHTSC-----EEEECSCCCTTTTHHHHTTCSCEEE--------EEEECCHHHHHHHHHTTCTTSC--------CC
T ss_pred HHHHHhccCC-----eEEEeccCcHHHHHHHHhcCCCeEE--------EEecCCHHHHHHHHHhcCCCcc--------CC
Confidence 5432100000 00001111111111111 222223 9999999999999999999886 68
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEec
Q psy2519 204 SFSASKLIRMMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 204 ~~~~~~i~~~l~~l~~~~g~tvi~~tH 230 (622)
+....++.+.++++.+ .+..+|.++|
T Consensus 134 ~~~~~~~~~~~~~l~~-~~~~~i~t~~ 159 (191)
T 1zp6_A 134 PLVVADLHSQFADLGA-FEHHVLPVSG 159 (191)
T ss_dssp HHHHHHHHHHTTCCGG-GGGGEEECTT
T ss_pred HHHHHHHHHHHhccCc-ccccEEECCC
Confidence 8888888888877654 3334444444
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=9.1e-14 Score=149.61 Aligned_cols=191 Identities=13% Similarity=0.063 Sum_probs=116.7
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcc--eEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSK--TVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~--~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+..+++.+ +++| |+.+ ++++|+++ ++|+. ++++|+| |||||||+|+|+|+.- .|.-.-.
T Consensus 14 ~~~l~~~~-~~~y--~~~~-L~~vsl~i-----~~Gei~~vaLvG~n-----GaGKSTLln~L~G~~l-----~g~~~~~ 74 (427)
T 2qag_B 14 CRTVPLAG-HVGF--DSLP-DQLVNKSV-----SQGFCFNILCVGET-----GLGKSTLMDTLFNTKF-----EGEPATH 74 (427)
T ss_dssp ---CCCCC-CC-C--C--C-HHHHHHSC-----C-CCEEEEEEECST-----TSSSHHHHHHHHTSCC------------
T ss_pred CceEEEee-EEEE--CCee-cCCCceEe-----cCCCeeEEEEECCC-----CCCHHHHHHHHhCccc-----cCCcCCC
Confidence 35567777 6664 6666 99999998 56666 7788776 8999999999999842 2221100
Q ss_pred CEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCcccc--HHHHHHHHHHHHHHh-CCCc----ccCCccCC--
Q psy2519 93 GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVK--AYQRIALINSLLIEL-GLMN----SQHTRIGS-- 163 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~--~~~~~~~v~~~l~~l-gL~~----~~~~~v~~-- 163 (622)
.. ....++.++|++|++.+++.+||.||+.|+.......... .....+..++.++.. ++.. ..|..+..
T Consensus 75 -~~-~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v 152 (427)
T 2qag_B 75 -TQ-PGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCL 152 (427)
T ss_dssp -CC-SSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEE
T ss_pred -CC-ccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEE
Confidence 00 1123567999999999889999999987753211000000 011233455666655 5432 12222110
Q ss_pred --cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCCEEEEEecc
Q psy2519 164 --SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE-LTSQRKKTVLCTIHQ 231 (622)
Q Consensus 164 --~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~-l~~~~g~tvi~~tH~ 231 (622)
..|. ..+|+-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +.+ .|.+|+.++.+
T Consensus 153 ~fI~d~-~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~-~gi~I~~is~~ 218 (427)
T 2qag_B 153 YFIAPT-GHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS-NGVQIYQFPTD 218 (427)
T ss_dssp EEECCC-C---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-TBCCCCCCC--
T ss_pred EEEeCC-CCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-cCCcEEecCCC
Confidence 0000 13477666 7899999999999999999999999999999999997 765 79999988865
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.32 E-value=1.1e-12 Score=128.28 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=62.5
Q ss_pred cChHH--HHHHHHHHHHhhC-CCeEEEeCCCCCCCHHH--------HHHHHHHHHHHHhcCCCEEEEEeccCcH------
Q psy2519 172 LSGGE--RKRLSFATELLTD-PALLLCDEPTTGLDSFS--------ASKLIRMMRELTSQRKKTVLCTIHQPSS------ 234 (622)
Q Consensus 172 LSgGq--rqRvsIA~aL~~~-P~lLlLDEPTsgLD~~~--------~~~i~~~l~~l~~~~g~tvi~~tH~~~~------ 234 (622)
.|+++ +++++.+++++.+ |+++++||||+++|+.. ..++++.|++++++.|.|||+++|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 45553 5688888999986 99999999999999743 3556777889887679999999997531
Q ss_pred ------HHHhhccceeeecCC
Q psy2519 235 ------ELIDMFDKIILLADS 249 (622)
Q Consensus 235 ------~i~~~~D~v~~L~~G 249 (622)
.+.+.||++++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 577899999999754
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.32 E-value=3.3e-16 Score=163.81 Aligned_cols=158 Identities=13% Similarity=0.087 Sum_probs=104.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC--------CCCCceeeEEEECCEecCc-------------------cccccE
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV--------IDDCIIDGDIRVNGKPVEG-------------------KFRSAC 104 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~--------~~~~~~~G~I~~~G~~~~~-------------------~~r~~i 104 (622)
.+++.|.+ |||||||||.|.|.. .+ ..|+|.++|.++.. ++++.+
T Consensus 6 v~~i~G~~-----GaGKTTll~~l~~~~~~~~~aVi~~---d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l 77 (318)
T 1nij_A 6 VTLLTGFL-----GAGKTTLLRHILNEQHGYKIAVIEN---EFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDAL 77 (318)
T ss_dssp EEEEEESS-----SSSCHHHHHHHHHSCCCCCEEEECS---SCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHH
T ss_pred EEEEEecC-----CCCHHHHHHHHHhhcCCCcEEEEEe---cCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHH
Confidence 44555665 899999999999986 34 58999999988743 134557
Q ss_pred EEE---ecCCCCCCCCCHHHHHHHHHHcCCCccc---cHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHH
Q psy2519 105 GFM---YQHDLFSPSLTVYEHLYFMALLKLDRRV---KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178 (622)
Q Consensus 105 gyV---~Q~~~l~~~lTV~E~l~f~~~l~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrq 178 (622)
+++ +|+..+++..+|.||..++......... +......+++.++..+++.+..++.. + +|+||+|
T Consensus 78 ~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~--------ls~g~~Q 148 (318)
T 1nij_A 78 LDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-Q--------FTIAQSQ 148 (318)
T ss_dssp HHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-H--------CHHHHHH
T ss_pred HHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-h--------chHHHHH
Confidence 777 6777777788888887653100000000 11111112233444445544443332 2 8999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 179 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 179 RvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
|+..+++++.+|+++ ||| .++.+.+++++ .+.||++++|++. ++..++
T Consensus 149 ~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~-~~~~l~ 196 (318)
T 1nij_A 149 VGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI-DLGLLF 196 (318)
T ss_dssp HHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC-CGGGGS
T ss_pred HHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC-CHHHHh
Confidence 999999999999987 999 78888888885 4899999999863 343344
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.31 E-value=4.9e-15 Score=148.82 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=98.9
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHh---CCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHH
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFL---SQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 126 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~---g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~ 126 (622)
++.++++|+| |||||||+++|+ |+..+ .+|+|.++|.+......+.+++++|+..++|..|+.|++...
T Consensus 27 ~~~i~l~G~~-----GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~ 98 (246)
T 2bbw_A 27 LLRAVILGPP-----GSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSE 98 (246)
T ss_dssp CCEEEEECCT-----TSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CcEEEEECCC-----CCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4456666665 899999999999 99887 579998877653323344556677888888999999999875
Q ss_pred HHcC--CC---ccccHHHHHHHHHHHHH--HhC------------CCcccCCccCCcCCCCccccChHHHHHHHHHHHH-
Q psy2519 127 ALLK--LD---RRVKAYQRIALINSLLI--ELG------------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL- 186 (622)
Q Consensus 127 ~~l~--~~---~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL- 186 (622)
.... .. ...+... ..++.+.+ .++ +....++.+.. ||| |+ ++|
T Consensus 99 l~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~--------lSg----rv---~al~ 161 (246)
T 2bbw_A 99 LENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP--------PSG----RV---YNLD 161 (246)
T ss_dssp HHTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET--------TTT----EE---EETT
T ss_pred HHhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC--------CCC----Cc---cccc
Confidence 4210 00 0011111 11222211 112 22233455444 999 66 777
Q ss_pred hhCCCeEEEe----CCCCCCCHHHHHHHHHHHHHHHh
Q psy2519 187 LTDPALLLCD----EPTTGLDSFSASKLIRMMRELTS 219 (622)
Q Consensus 187 ~~~P~lLlLD----EPTsgLD~~~~~~i~~~l~~l~~ 219 (622)
+.+|++++|| |||+|||+.+...+.+.++++.+
T Consensus 162 ~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 162 FNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999876
No 125
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.29 E-value=1.2e-12 Score=138.21 Aligned_cols=113 Identities=13% Similarity=-0.012 Sum_probs=81.8
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCC-CCCceeeEEEEC-CEecCccccccEEEEecCCCCCCCCCHHHHHHHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVI-DDCIIDGDIRVN-GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 126 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~-~~~~~~G~I~~~-G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~ 126 (622)
+|+.++++|+| |||||||+|+|+|... + .+|+|.++ |++.....++.+++++|+..+++.+||+|+ .
T Consensus 214 ~G~~~~lvG~s-----G~GKSTLln~L~g~~~~~---~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~---~ 282 (358)
T 2rcn_A 214 TGRISIFAGQS-----GVGKSSLLNALLGLQNEI---LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF---G 282 (358)
T ss_dssp TTSEEEEECCT-----TSSHHHHHHHHHCCSSCC---CCC-------------CCCEEEECTTSCEEEECHHHHTC---C
T ss_pred CCCEEEEECCC-----CccHHHHHHHHhcccccc---ccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh---h
Confidence 45667777665 8999999999999998 7 58999987 766544456789999999999999999984 1
Q ss_pred HHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHH
Q psy2519 127 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186 (622)
Q Consensus 127 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL 186 (622)
+. ..++++..+++.++++.+|+.+..+....+ +| ||+||++||+++
T Consensus 283 --l~---~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~--------lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 --LW---HLEPEQITQGFVEFHDYLGHCKYRDCKHDA--------DP-GCAIREAVENGA 328 (358)
T ss_dssp --CC---CCCHHHHHHTSGGGGGGTTCSSSTTCCSSS--------CT-TCHHHHHHHHTS
T ss_pred --hc---CCCHHHHHHHHHHHHHHcCCchhcCCCccc--------CC-HHHHHHHHHhcC
Confidence 11 234455567788999999998888888666 99 999999999864
No 126
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.28 E-value=1.7e-12 Score=138.43 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=92.4
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
++++.++++|+| |||||||+++|+|+.+|. .+|+|.+.|.++....++.+++|+|..
T Consensus 134 ~~g~~i~ivG~~-----GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~---------------- 190 (372)
T 2ewv_A 134 RKMGLILVTGPT-----GSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE---------------- 190 (372)
T ss_dssp SSSEEEEEECSS-----SSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE----------------
T ss_pred cCCCEEEEECCC-----CCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee----------------
Confidence 456667777666 899999999999998772 179998877666434567788898841
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 207 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~ 207 (622)
+|+. ... + +.+|+++|..+|+++++|||+ |+.+.
T Consensus 191 -----------------------~g~~------~~~--------~------~~~l~~~L~~~pd~illdE~~---d~e~~ 224 (372)
T 2ewv_A 191 -----------------------VGED------TKS--------F------ADALRAALREDPDVIFVGEMR---DLETV 224 (372)
T ss_dssp -----------------------BTTT------BSC--------S------HHHHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred -----------------------cCCC------HHH--------H------HHHHHHHhhhCcCEEEECCCC---CHHHH
Confidence 1221 111 5 469999999999999999999 77664
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 208 SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 208 ~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
.. .++. +. .|.+|+.++|+. .+.+.+||++.|..
T Consensus 225 ~~---~l~~-~~-~g~~vi~t~H~~--~~~~~~~rl~~l~~ 258 (372)
T 2ewv_A 225 ET---ALRA-AE-TGHLVFGTLHTN--TAIDTIHRIVDIFP 258 (372)
T ss_dssp HH---HHHH-HT-TTCEEEECCCCC--SHHHHHHHHHHTSC
T ss_pred HH---HHHH-Hh-cCCEEEEEECcc--hHHHHHHHHHHhcC
Confidence 43 3443 33 689999999995 47789999988753
No 127
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.24 E-value=1.5e-12 Score=136.35 Aligned_cols=142 Identities=8% Similarity=0.049 Sum_probs=99.3
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--------ccc--ccEEEEecCCCCCCCC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--------KFR--SACGFMYQHDLFSPSL 117 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--------~~r--~~igyV~Q~~~l~~~l 117 (622)
++++.+.++|+| |||||||++.|+|+++| .+|+|.++|.++.+ .++ ..+.+++|+..+.|.+
T Consensus 127 ~~g~vi~lvG~n-----GaGKTTll~~Lag~l~~---~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~ 198 (328)
T 3e70_C 127 EKPYVIMFVGFN-----GSGKTTTIAKLANWLKN---HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAA 198 (328)
T ss_dssp CSSEEEEEECCT-----TSSHHHHHHHHHHHHHH---TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHH
T ss_pred CCCeEEEEECCC-----CCCHHHHHHHHHHHHHh---cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHH
Confidence 345566666665 89999999999999988 48999999998753 122 3456999999999999
Q ss_pred CHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeC
Q psy2519 118 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197 (622)
Q Consensus 118 TV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDE 197 (622)
||+||+.++.....+. -+++..|+.+..+..+.. || .+++++..++.+++||.
T Consensus 199 ~v~e~l~~~~~~~~d~------------vliDtaG~~~~~~~l~~e--------L~-------~i~ral~~de~llvLDa 251 (328)
T 3e70_C 199 VAYDAIQHAKARGIDV------------VLIDTAGRSETNRNLMDE--------MK-------KIARVTKPNLVIFVGDA 251 (328)
T ss_dssp HHHHHHHHHHHHTCSE------------EEEEECCSCCTTTCHHHH--------HH-------HHHHHHCCSEEEEEEEG
T ss_pred HHHHHHHHHHhccchh------------hHHhhccchhHHHHHHHH--------HH-------HHHHHhcCCCCEEEEec
Confidence 9999998764321100 012333443333333222 44 38888887777777875
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 198 PTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
+|. .++++.++.+.++.+.|+|++||.
T Consensus 252 ~t~-------~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 252 LAG-------NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp GGT-------THHHHHHHHHHHHSCCCEEEEECG
T ss_pred HHH-------HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 543 466777788876679999999996
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.20 E-value=2.4e-14 Score=150.85 Aligned_cols=174 Identities=13% Similarity=0.010 Sum_probs=117.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|+++.| +...+++++++++ ++++.+.++|+| |||||||+++|+|++.| .+|+|.+.|.++
T Consensus 29 ~ie~~~~~~~~--~~~~~l~~i~~~~-----~~g~~v~i~G~~-----GaGKSTLl~~l~g~~~~---~~g~v~i~~~d~ 93 (337)
T 2qm8_A 29 LAESRRADHRA--AVRDLIDAVLPQT-----GRAIRVGITGVP-----GVGKSTTIDALGSLLTA---AGHKVAVLAVDP 93 (337)
T ss_dssp HHTCSSHHHHH--HHHHHHHHHGGGC-----CCSEEEEEECCT-----TSCHHHHHHHHHHHHHH---TTCCEEEEEECG
T ss_pred HHeeCCccccc--ChHHHHHhCCccc-----CCCeEEEEECCC-----CCCHHHHHHHHHHhhhh---CCCEEEEEEEcC
Confidence 47889999986 6667899999887 567777777776 89999999999999987 479999999887
Q ss_pred Cc--------cccccEEEEecCCCCCCCCC------------HHHHHHHHH---------------------H-------
Q psy2519 97 EG--------KFRSACGFMYQHDLFSPSLT------------VYEHLYFMA---------------------L------- 128 (622)
Q Consensus 97 ~~--------~~r~~igyV~Q~~~l~~~lT------------V~E~l~f~~---------------------~------- 128 (622)
.. ..++++++++|++.+++..+ ++|.+.... .
T Consensus 94 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl 173 (337)
T 2qm8_A 94 SSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFL 173 (337)
T ss_dssp GGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEE
T ss_pred cccccccchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEE
Confidence 42 24678999999988775422 333331110 0
Q ss_pred -cCCCccccHHHH---HHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhh------CCCeEEEeCC
Q psy2519 129 -LKLDRRVKAYQR---IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT------DPALLLCDEP 198 (622)
Q Consensus 129 -l~~~~~~~~~~~---~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~------~P~lLlLDEP 198 (622)
+.... ...+. .+.+.+....+.+ +..|... .+.+|+|++|++..+++++. +|++++
T Consensus 174 ~v~d~~--~~~~~~~i~~~i~~~~~ivvl-NK~Dl~~-------~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~---- 239 (337)
T 2qm8_A 174 VLMLPG--AGDELQGIKKGIFELADMIAV-NKADDGD-------GERRASAAASEYRAALHILTPPSATWTPPVVT---- 239 (337)
T ss_dssp EEECSC--C------CCTTHHHHCSEEEE-ECCSTTC-------CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----
T ss_pred EEEcCC--CcccHHHHHHHHhccccEEEE-EchhccC-------chhHHHHHHHHHHHHHHhccccccCCCCCEEE----
Confidence 00000 00100 0011111112222 2233210 12389999999999999987 688876
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q psy2519 199 TTGLDSFSASKLIRMMRELTS 219 (622)
Q Consensus 199 TsgLD~~~~~~i~~~l~~l~~ 219 (622)
||++|.....++.+.|.++.+
T Consensus 240 ~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 240 ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EBTTTTBSHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.18 E-value=1.3e-11 Score=122.48 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=50.5
Q ss_pred cChHHHHH-HHHHHHHh--hCCCeEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 172 LSGGERKR-LSFATELL--TDPALLLCDEPTTGLDSF-------S-----ASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 172 LSgGqrqR-vsIA~aL~--~~P~lLlLDEPTsgLD~~-------~-----~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
.+..+... +.-+.+++ .+|+++++|||++.+|+. . ..++++.|++++++.|.|||+++|.. .+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~-~~~ 177 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV-AQV 177 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee-ecC
Confidence 44444332 23333443 589999999999999985 3 45677778888876799999999964 233
Q ss_pred H-------------------hhccceeeecCCc
Q psy2519 237 I-------------------DMFDKIILLADSR 250 (622)
Q Consensus 237 ~-------------------~~~D~v~~L~~G~ 250 (622)
. ..||++++|+.|+
T Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp -------------------CCTTCEEEEEEECS
T ss_pred CCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 2 2789999998653
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.16 E-value=9.1e-13 Score=143.67 Aligned_cols=178 Identities=11% Similarity=0.066 Sum_probs=112.7
Q ss_pred EeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--------c--ccccEE
Q psy2519 36 AIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--------K--FRSACG 105 (622)
Q Consensus 36 ~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--------~--~r~~ig 105 (622)
+++|+++ ++|+.+.++|+| |||||||+++|+|++++ .+|+|.++|.+..+ . .|+.++
T Consensus 284 ~~Isl~i-----~~GeVI~LVGpN-----GSGKTTLl~~LAgll~~---~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~ 350 (503)
T 2yhs_A 284 EPLNVEG-----KAPFVILMVGVN-----GVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP 350 (503)
T ss_dssp CCCCCCS-----CTTEEEEEECCT-----TSSHHHHHHHHHHHHHH---TTCCEEEECCCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCceeec-----cCCeEEEEECCC-----cccHHHHHHHHHHHhhh---cCCeEEEecCcccchhhHHHHHHHHHhcCce
Confidence 4566655 456677777776 89999999999999987 37999998777532 1 256799
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 106 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 106 yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
|++|+..+++.+||++|+.++.....+ . -+++..|+.+.... +-.-.+|++.++++
T Consensus 351 vV~Q~~~~~p~~tV~e~l~~a~~~~~D----------v--VLIDTaGrl~~~~~------------lm~EL~kiv~iar~ 406 (503)
T 2yhs_A 351 VIAQHTGADSASVIFDAIQAAKARNID----------V--LIADTAGRLQNKSH------------LMEELKKIVRVMKK 406 (503)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHTTCS----------E--EEECCCCSCCCHHH------------HHHHHHHHHHHHHT
T ss_pred EEecccCcCHHHHHHHHHHHHHhcCCC----------E--EEEeCCCccchhhh------------HHHHHHHHHHHHHH
Confidence 999998888999999999987532110 0 01222232211111 22233578888887
Q ss_pred Hh-hCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec--CCceEEecChH
Q psy2519 186 LL-TDPA-LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAFIGSKD 258 (622)
Q Consensus 186 L~-~~P~-lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 258 (622)
+. ..|. +||...||+|.|.. +.++.+.+..|.|.+++||- . ...+..+.+-++. +..|.|.|.-+
T Consensus 407 l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIlTKL-D-~takgG~~lsi~~~~~~PI~fig~Ge 475 (503)
T 2yhs_A 407 LDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTKL-D-GTAKGGVIFSVADQFGIPIRYIGVGE 475 (503)
T ss_dssp TCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEECG-G-GCSCCTHHHHHHHHHCCCEEEEECSS
T ss_pred hccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEcC-C-CcccccHHHHHHHHHCCCEEEEecCC
Confidence 64 5574 56555588886554 44556665568999999994 2 3223333333332 33555555443
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=3.5e-11 Score=126.66 Aligned_cols=145 Identities=11% Similarity=0.066 Sum_probs=76.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhC-CCCCCCceeeEEEECCEecCc--cccccEEEEecCCCCCCCCCHHHHHHHHHH
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLS-QVIDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g-~~~~~~~~~G~I~~~G~~~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~ 128 (622)
...+.|++ |+|||||+++|++ +..+ ..|++.++|.+... ..+..+++++|.+.+.-..+ +
T Consensus 38 ~~ll~Gp~-----G~GKTtl~~~la~~l~~~---~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------- 100 (354)
T 1sxj_E 38 HLLLYGPN-----GTGKKTRCMALLESIFGP---GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D------- 100 (354)
T ss_dssp CEEEECST-----TSSHHHHHHTHHHHHSCT---TCCC------------------CCEECSSEEEECCC----------
T ss_pred eEEEECCC-----CCCHHHHHHHHHHHHcCC---CCCeEEecceeecccccccceeeeecccceEEecHh--h-------
Confidence 45555554 8999999999999 6666 37999999987643 23567889988764321111 0
Q ss_pred cCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q psy2519 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 208 (622)
Q Consensus 129 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~ 208 (622)
... .... .+++.++.+......+... . +|| +..+|+++++|||++ ||+.++.
T Consensus 101 ~~~---~~~~----~~~~~i~~~~~~~~~~~~~-~--------ls~-----------l~~~~~vlilDE~~~-L~~~~~~ 152 (354)
T 1sxj_E 101 MGN---NDRI----VIQELLKEVAQMEQVDFQD-S--------KDG-----------LAHRYKCVIINEANS-LTKDAQA 152 (354)
T ss_dssp ------CCHH----HHHHHHHHHTTTTC--------------------------------CCEEEEEECTTS-SCHHHHH
T ss_pred cCC---cchH----HHHHHHHHHHHhccccccc-c--------ccc-----------cCCCCeEEEEeCccc-cCHHHHH
Confidence 000 0111 1233444432211111111 2 677 788999999999999 9999999
Q ss_pred HHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 209 KLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 209 ~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
.+.+.+.+.. .+.++|+++|++......+.+|.
T Consensus 153 ~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 153 ALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp HHHHHHHHST--TTEEEEEEESCSCSSCHHHHTTS
T ss_pred HHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHhhc
Confidence 9999999874 46899999999753323333443
No 132
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.13 E-value=2.6e-13 Score=128.88 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=85.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-------ccc-ccEE----EEecCCCCCCCCCH
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-------KFR-SACG----FMYQHDLFSPSLTV 119 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-------~~r-~~ig----yV~Q~~~l~~~lTV 119 (622)
.+.++|+ ||||||||+++|+|+++|.....|+|.++|.++.. .+| +.+| +++|+..++ +
T Consensus 4 ~v~IvG~-----SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i 74 (171)
T 2f1r_A 4 ILSIVGT-----SDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----I 74 (171)
T ss_dssp EEEEEES-----CHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----E
T ss_pred EEEEECC-----CCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----E
Confidence 4556665 48999999999999998732237999999987421 244 4567 888876654 1
Q ss_pred HHHHHHHHHcCCCccccHHHHHHHHHHHHHH-hCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeE-----
Q psy2519 120 YEHLYFMALLKLDRRVKAYQRIALINSLLIE-LGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL----- 193 (622)
Q Consensus 120 ~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lL----- 193 (622)
+| . . .+....++++++. +. ..|+.+++ |||||||||++|||+++.+|++.
T Consensus 75 ~~---------~----~-~~~~a~l~~~i~~~l~---g~dt~i~E-------glSgGq~qri~lARall~~p~i~~~~~~ 130 (171)
T 2f1r_A 75 RR---------V----S-EEEGNDLDWIYERYLS---DYDLVITE-------GFSKAGKDRIVVVKKPEEVEHFRQGRIL 130 (171)
T ss_dssp EE---------C----C-HHHHTCHHHHHHHHTT---TCSEEEEE-------SCGGGCCCEEEECSSGGGGGGGCSSCEE
T ss_pred ec---------C----C-hhhhhCHHHHHHhhCC---CCCEEEEC-------CcCCCCCcEEEEEecccCCCccCccceE
Confidence 11 0 0 1112234566665 43 46777776 39999999999999999999873
Q ss_pred --EEeCCCCC---CCHHHHHHHHHHHHHHHhc
Q psy2519 194 --LCDEPTTG---LDSFSASKLIRMMRELTSQ 220 (622)
Q Consensus 194 --lLDEPTsg---LD~~~~~~i~~~l~~l~~~ 220 (622)
.=|.|..+ +|......+.+.+.+...+
T Consensus 131 a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 131 AVVCDERVDGHKWFRRDEVERIAEFILSLLRE 162 (171)
T ss_dssp EEECSSCCSSSCEECTTCHHHHHHHHHHHHTC
T ss_pred EEEecCCcccCcccCcccHHHHHHHHHHHHhc
Confidence 22444322 3445567777777766653
No 133
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=2.7e-13 Score=144.96 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=117.6
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCC------------CCCCCceeeEEEECCEecCc-----cccccE---EEE
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQ------------VIDDCIIDGDIRVNGKPVEG-----KFRSAC---GFM 107 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~------------~~~~~~~~G~I~~~G~~~~~-----~~r~~i---gyV 107 (622)
..+..+.++|+| |||||||+|+|+|. ..| .+|.|.++|..+.. ..++.+ .++
T Consensus 18 ~~g~~vgiVG~p-----naGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~l 89 (392)
T 1ni3_A 18 GNNLKTGIVGMP-----NVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTV 89 (392)
T ss_dssp SSCCEEEEEECS-----SSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEE
T ss_pred cCCCEEEEECCC-----CCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEE
Confidence 456677888887 79999999999993 234 58999999865422 123333 467
Q ss_pred ecCCCCCCCCCHHHHH--HHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 108 YQHDLFSPSLTVYEHL--YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 108 ~Q~~~l~~~lTV~E~l--~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
.+.+.+.+..+..|++ .|...++. ++.++..++..+ +..+.. +||+.
T Consensus 90 vD~pGl~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~i~~--------v~~~~--------- 138 (392)
T 1ni3_A 90 FDIAGLTKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAEIIH--------VEGDV--------- 138 (392)
T ss_dssp ECTGGGCCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTCSSC--------CSSSS---------
T ss_pred EeccccccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cceeee--------ecccc---------
Confidence 7888888888877766 44433321 111222222211 233322 66653
Q ss_pred HhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCCEEEEEeccCcHHHHhhcccee-eecCC-ceEEecChH
Q psy2519 186 LLTDP--ALLLCDEPTTGLDSFSASKLIRMMREL-TSQRKKTVLCTIHQPSSELIDMFDKII-LLADS-RTAFIGSKD 258 (622)
Q Consensus 186 L~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l-~~~~g~tvi~~tH~~~~~i~~~~D~v~-~L~~G-~iv~~G~~~ 258 (622)
+| +++++|||+.++|+....+.++.++++ ++ .|.|++ +|+. .++.++||++. +|.+| ++++.|+.+
T Consensus 139 ---dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 139 ---DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred ---CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCC
Confidence 89 999999999999999999999999998 65 677864 9995 78899999999 99999 999887654
No 134
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.11 E-value=7.1e-13 Score=139.35 Aligned_cols=199 Identities=15% Similarity=0.104 Sum_probs=122.2
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcc--cCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC-ceeeEEEEC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQ--TASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC-IIDGDIRVN 92 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~--~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~-~~~G~I~~~ 92 (622)
.+++.++++..| |...+++++++.+..+. .++.+.+++.|+| |+|||||+++|+|.+.... ..+|++..+
T Consensus 17 ~~lr~~~l~~~~--g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~-----G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 17 QFLRPKSLDEFI--GQENVKKKLSLALEAAKMRGEVLDHVLLAGPP-----GLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp CTTSCSSGGGCC--SCHHHHHHHHHHHHHHHHHTCCCCCEEEESST-----TSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HHcCCccHHHcc--CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCC-----CCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 346677888764 77677888777662210 1112456666665 8999999999999873211 157777776
Q ss_pred CEecCc---c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCcc-ccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 93 GKPVEG---K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR-VKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 93 G~~~~~---~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
|.++.. . .++.++|+.|.+.+.+ ++.|++........... .......+.++..++.++|.. +++.++.
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~---- 162 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGL---- 162 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGG----
T ss_pred HHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCccc----
Confidence 665532 1 2567999999887766 78888854433221000 001112234455555566644 5555555
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||+|+|||+.++ .+||+.+..++.++|++.++..| ++|++ +.+..++++.
T Consensus 163 ----Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~~~---- 212 (334)
T 1in4_A 163 ----LSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIED-AAAEMIAKRS---- 212 (334)
T ss_dssp ----SCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHHTS----
T ss_pred ----CCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHHhc----
Confidence 999999998655 78899999999999999987555 35774 4566666642
Q ss_pred CCceEEecChHHHHHHH
Q psy2519 248 DSRTAFIGSKDAALAFL 264 (622)
Q Consensus 248 ~G~iv~~G~~~~~~~~~ 264 (622)
.|++..+...+
T Consensus 213 ------~G~~R~a~~ll 223 (334)
T 1in4_A 213 ------RGTPRIAIRLT 223 (334)
T ss_dssp ------TTCHHHHHHHH
T ss_pred ------CCChHHHHHHH
Confidence 36666554433
No 135
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.10 E-value=1.9e-12 Score=121.40 Aligned_cols=88 Identities=14% Similarity=0.073 Sum_probs=70.4
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+.+|+++. +|+..+++++|+++ ++|+.+.++|+| |||||||+|+|+|++ | .+|+|.++|.++..
T Consensus 9 ~~~~~~~~--~g~~~~l~~vsl~i-----~~Ge~v~L~G~n-----GaGKTTLlr~l~g~l-~---~~G~V~~~g~~i~~ 72 (158)
T 1htw_A 9 PDEFSMLR--FGKKFAEILLKLHT-----EKAIMVYLNGDL-----GAGKTTLTRGMLQGI-G---HQGNVKSPTYTLVE 72 (158)
T ss_dssp CSHHHHHH--HHHHHHHHHHHHCC-----SSCEEEEEECST-----TSSHHHHHHHHHHHT-T---CCSCCCCCTTTCEE
T ss_pred CCHHHHHH--HHHHHHHhcccccc-----CCCCEEEEECCC-----CCCHHHHHHHHHHhC-C---CCCeEEECCEeeee
Confidence 34556666 47778899999998 667777788777 899999999999999 7 48999999988754
Q ss_pred ccc-ccEEEEecCCCCCCCCCHHHHHHH
Q psy2519 99 KFR-SACGFMYQHDLFSPSLTVYEHLYF 125 (622)
Q Consensus 99 ~~r-~~igyV~Q~~~l~~~lTV~E~l~f 125 (622)
... +. +++|+..++ .+||.||+.+
T Consensus 73 ~~~~~~--~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 73 EYNIAG--KMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp EEEETT--EEEEEEECT-TCSCTTHHHH
T ss_pred eccCCC--cceeccccc-cCCcHHHHHH
Confidence 211 22 899998888 9999999965
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.08 E-value=4.8e-11 Score=128.65 Aligned_cols=170 Identities=13% Similarity=0.119 Sum_probs=98.8
Q ss_pred eEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCC
Q psy2519 35 YAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 114 (622)
Q Consensus 35 l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~ 114 (622)
-+++++++ +.+..+.++|+| ||||||||++|+|..+ .+.+.+.+ .+...+|+|.+++.
T Consensus 147 ~~~i~lel-----k~g~~VgLVG~~-----gAGKSTLL~~Lsg~~~---------~i~~~~ft-Tl~p~~G~V~~~~~-- 204 (416)
T 1udx_A 147 KRRLRLEL-----MLIADVGLVGYP-----NAGKSSLLAAMTRAHP---------KIAPYPFT-TLSPNLGVVEVSEE-- 204 (416)
T ss_dssp EEEEEEEE-----CCSCSEEEECCG-----GGCHHHHHHHHCSSCC---------EECCCTTC-SSCCEEEEEECSSS--
T ss_pred EeeeeeEE-----cCCCEEEEECCC-----CCcHHHHHHHHHcCCc---------cccCcccc-eecceeeEEEecCc--
Confidence 46788888 567788888887 7999999999999843 12222221 12233455554320
Q ss_pred CCCCHHHHHHHH--HHcCCCccccHH--HHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCC
Q psy2519 115 PSLTVYEHLYFM--ALLKLDRRVKAY--QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190 (622)
Q Consensus 115 ~~lTV~E~l~f~--~~l~~~~~~~~~--~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P 190 (622)
..+++.|+.-+. +... ...... ...++++.++..+++. +..+.+ ||+||+|++++|++|+.+|
T Consensus 205 ~~~~l~DtpGli~~a~~~--~~L~~~fl~~~era~~lL~vvDls---~~~~~~--------ls~g~~el~~la~aL~~~P 271 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEG--KGLGLEFLRHIARTRVLLYVLDAA---DEPLKT--------LETLRKEVGAYDPALLRRP 271 (416)
T ss_dssp CEEEEEECCCCCCCGGGS--CCSCHHHHHHHTSSSEEEEEEETT---SCHHHH--------HHHHHHHHHHHCHHHHHSC
T ss_pred ceEEEEeccccccchhhh--hhhhHHHHHHHHHHHhhhEEeCCc---cCCHHH--------HHHHHHHHHHHhHHhhcCC
Confidence 011111110000 0000 001111 0111223334444443 334444 9999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 191 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 191 ~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
.++++ +++|...+ +..+.+++..++.|.+++.+|......+.++++.+.
T Consensus 272 ~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 272 SLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp EEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 99999 99999877 555555555544677777666433456777776654
No 137
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.07 E-value=3.5e-12 Score=132.21 Aligned_cols=117 Identities=8% Similarity=-0.012 Sum_probs=78.9
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE---CCEecCcc---cc-ccEEEEecCCCCC-----CC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV---NGKPVEGK---FR-SACGFMYQHDLFS-----PS 116 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~---~G~~~~~~---~r-~~igyV~Q~~~l~-----~~ 116 (622)
.++..+++|+| |||||||+|+|+ +.+| .+|+|.+ +|++.+.. .+ +.+|||+|++.+. +.
T Consensus 164 ~G~i~~l~G~s-----G~GKSTLln~l~-~~~~---~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~ 234 (302)
T 2yv5_A 164 EGFICILAGPS-----GVGKSSILSRLT-GEEL---RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMF 234 (302)
T ss_dssp TTCEEEEECST-----TSSHHHHHHHHH-SCCC---CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGT
T ss_pred cCcEEEEECCC-----CCCHHHHHHHHH-HhhC---cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCccccc
Confidence 34456666665 899999999999 8888 4899999 99887641 22 3689999988553 78
Q ss_pred CCHHHHH--HHH------HHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 117 LTVYEHL--YFM------ALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 117 lTV~E~l--~f~------~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
+|+ |++ .|+ .+.+. .....+...+++++++.++|.+ ..++++.. |||.++|++.|||+
T Consensus 235 lt~-e~l~~~f~~~~~~~c~~~~--~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~--------ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 235 VKP-REVRNYFREFLRYQCKYPD--CTHTNEPGCAVKEAVKNGEISCERYKSYLKI--------IKVYLEEIKELCRE 301 (302)
T ss_dssp SCG-GGGGGGCGGGHHHHHHSTT--CCSSSCTTCHHHHHHHTTSSCHHHHHHHHHH--------TTCCCTTHHHHSSC
T ss_pred CCH-HHHHHHHHHHHHccCCCCC--CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHH--------HHHHHHHHHHHhcc
Confidence 999 888 453 11221 0011223456889999999986 66777655 99988999999874
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.03 E-value=3.8e-13 Score=145.30 Aligned_cols=148 Identities=11% Similarity=0.053 Sum_probs=100.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++++++.+ +...+|+++ + . .+++.++++|+| ||||||||++|+|.+.| .+|+|.+.|.++
T Consensus 143 ~~~l~~Lg~~~--~~~~~L~~l-~-~-----~~ggii~I~Gpn-----GSGKTTlL~allg~l~~---~~g~I~~~ed~i 205 (418)
T 1p9r_A 143 RLDLHSLGMTA--HNHDNFRRL-I-K-----RPHGIILVTGPT-----GSGKSTTLYAGLQELNS---SERNILTVEDPI 205 (418)
T ss_dssp CCCGGGSCCCH--HHHHHHHHH-H-T-----SSSEEEEEECST-----TSCHHHHHHHHHHHHCC---TTSCEEEEESSC
T ss_pred CCCHHHcCCCH--HHHHHHHHH-H-H-----hcCCeEEEECCC-----CCCHHHHHHHHHhhcCC---CCCEEEEecccc
Confidence 57888888875 555566665 2 1 356677777776 89999999999999987 379999998876
Q ss_pred Cc--------cccccEEEEe---------cCCCC--CCC----CCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhC
Q psy2519 97 EG--------KFRSACGFMY---------QHDLF--SPS----LTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELG 152 (622)
Q Consensus 97 ~~--------~~r~~igyV~---------Q~~~l--~~~----lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lg 152 (622)
.. ..++.+|+.+ |++.. ++. .|+.+++.++..-+.. .........+.+ +.+..+|
T Consensus 206 e~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lg 284 (418)
T 1p9r_A 206 EFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMG 284 (418)
T ss_dssp CSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHT
T ss_pred hhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcC
Confidence 42 2345566655 87654 344 6899999876421100 000000011222 3467788
Q ss_pred CCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEE
Q psy2519 153 LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194 (622)
Q Consensus 153 L~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLl 194 (622)
+.+.. ...+ |||||+|| ||++|+.+|++..
T Consensus 285 l~~~~--~~~~--------LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 285 IEPFL--ISSS--------LLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp CCHHH--HHHH--------EEEEEEEE--EEEEECTTTCEEE
T ss_pred CcHHH--HHHH--------HHHHHHHH--hhhhhcCCCCccC
Confidence 87643 4334 99999999 9999999999875
No 139
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.02 E-value=1.4e-11 Score=117.21 Aligned_cols=48 Identities=10% Similarity=0.164 Sum_probs=42.2
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHH
Q psy2519 187 LTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 235 (622)
Q Consensus 187 ~~~P~lLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~ 235 (622)
+.+|++|+||||++ ++|+..+..+.+++.+..+ +|+++|++||.+.++
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 45899999999985 9999999999999999876 689999999987543
No 140
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.02 E-value=1e-11 Score=127.92 Aligned_cols=119 Identities=12% Similarity=0.063 Sum_probs=77.4
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHH----cC---CCcccc
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL----LK---LDRRVK 136 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~----l~---~~~~~~ 136 (622)
||||||||.+.|.+++.+ .| . . ++.+.+|+||+.+++. ++++|+.+... +. .+....
T Consensus 40 sGsGKSTla~~L~~~l~~----~g------~----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~d 103 (290)
T 1odf_A 40 QGSGKSFTSIQIYNHLME----KY------G----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGTHD 103 (290)
T ss_dssp TTSSHHHHHHHHHHHHHH----HH------G----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTSBC
T ss_pred CCCCHHHHHHHHHHHhhh----cC------C----C-CceEEEeccccccCCh-HHHHHHhccccccchhhhccCcchhH
Confidence 599999999999998875 23 0 1 3456677999888765 88999988631 11 121111
Q ss_pred HHHHHHHHHHHHHHhCCCcc--cCCccCCcCCCCccccChHHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHHH
Q psy2519 137 AYQRIALINSLLIELGLMNS--QHTRIGSSSITQKVVLSGGERKRLSFA--TELLTDPALLLCDEPTTGLDSFS 206 (622)
Q Consensus 137 ~~~~~~~v~~~l~~lgL~~~--~~~~v~~~~~~~~~gLSgGqrqRvsIA--~aL~~~P~lLlLDEPTsgLD~~~ 206 (622)
.+...+.++.+.-.-. ....+.- |..-+.+||||+||+++| +++ +|+|+|+|||++++|+..
T Consensus 104 ----~~~l~~~l~~l~~g~~t~~~~~v~~--p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 104 ----MKLLQEVLNTIFNNNEHPDQDTVVL--PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ----HHHHHHHHHHHTC------CCEEEE--CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ----HHHHHHHHHHhhccCccccCcceee--ccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 2345566777643200 0000100 222234999999999997 555 999999999999999853
No 141
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.99 E-value=1.8e-10 Score=106.70 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=36.6
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCE-EEEEeccCcH
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT-VLCTIHQPSS 234 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~t-vi~~tH~~~~ 234 (622)
.+|++|++|||++ +|...+..+.+++.++.+ .|++ +|+++|.+..
T Consensus 82 ~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 82 FEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESSCTT
T ss_pred hCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCCCHH
Confidence 4689999999998 666568889999999887 5787 8889986533
No 142
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.96 E-value=2.6e-13 Score=150.26 Aligned_cols=180 Identities=9% Similarity=0.077 Sum_probs=106.1
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe-cCccccccEEEEecCC
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP-VEGKFRSACGFMYQHD 111 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~-~~~~~r~~igyV~Q~~ 111 (622)
++++++++.+ ++++.+.++|+| ||||||||++|+|+++| .+|.|.++|.+ +...-.+.++++.|..
T Consensus 248 ~~l~~l~~~v-----~~g~~i~I~Gpt-----GSGKTTlL~aL~~~i~~---~~giitied~~E~~~~~~~~v~~~~r~~ 314 (511)
T 2oap_1 248 GVLAYLWLAI-----EHKFSAIVVGET-----ASGKTTTLNAIMMFIPP---DAKVVSIEDTREIKLYHENWIAEVTRTG 314 (511)
T ss_dssp HHHHHHHHHH-----HTTCCEEEEEST-----TSSHHHHHHHHGGGSCT---TCCEEEEESSCCCCCCCSSEEEEECBCC
T ss_pred HHHHHHHHHH-----hCCCEEEEECCC-----CCCHHHHHHHHHhhCCC---CCCEEEEcCcccccCCCCCeEEEEeecc
Confidence 4556666666 456677777776 89999999999999988 48999998865 2212234455555543
Q ss_pred C----------------------CCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcc--cCCccCCcCC
Q psy2519 112 L----------------------FSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNS--QHTRIGSSSI 166 (622)
Q Consensus 112 ~----------------------l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~--~~~~v~~~~~ 166 (622)
. +++.++..|++.+......+ ...+.- ....+.++++++..... ....+.. .-
T Consensus 315 ~~~~~~~~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~-l~ 392 (511)
T 2oap_1 315 MGEGEIDMYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQF-LD 392 (511)
T ss_dssp SSSCCBCHHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGG-CC
T ss_pred cccCCcCHHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhh-cc
Confidence 2 22355555655443222211 000000 00112344444433210 0000000 00
Q ss_pred ---CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEE--EeccCcHHHHhhcc
Q psy2519 167 ---TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC--TIHQPSSELIDMFD 241 (622)
Q Consensus 167 ---~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~tH~~~~~i~~~~D 241 (622)
.+.+.+|||||||+++|. + | |+|||+.....+.+.+.++.+ .|.|+++ +||++ +++.+.|+
T Consensus 393 ~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l-~ei~~~~g 458 (511)
T 2oap_1 393 IALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKL-EKMADFLG 458 (511)
T ss_dssp EEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHH-HHHHHHHT
T ss_pred EEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHH-HHHHHHcC
Confidence 112348999999987651 1 7 999999988888888888765 5889985 89995 67776664
No 143
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.93 E-value=2.5e-09 Score=114.70 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=48.9
Q ss_pred hCCCeEEEeCCCCCCCHHHH------------HHHHHHHHHHHhcCCCEEEEEeccCc------------------HHHH
Q psy2519 188 TDPALLLCDEPTTGLDSFSA------------SKLIRMMRELTSQRKKTVLCTIHQPS------------------SELI 237 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~------------~~i~~~l~~l~~~~g~tvi~~tH~~~------------------~~i~ 237 (622)
.+|+++++||||+.+|+... .++++.|++++++.|.|||+++|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 46999999999999997543 67889999999877999999999821 2346
Q ss_pred hhccceeeecCCc
Q psy2519 238 DMFDKIILLADSR 250 (622)
Q Consensus 238 ~~~D~v~~L~~G~ 250 (622)
+.+|.++.|++++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 7789999998764
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.87 E-value=8.4e-11 Score=121.74 Aligned_cols=100 Identities=6% Similarity=0.012 Sum_probs=64.7
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE---CCEecCcc---c-cccEEEEecCCC---------
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV---NGKPVEGK---F-RSACGFMYQHDL--------- 112 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~---~G~~~~~~---~-r~~igyV~Q~~~--------- 112 (622)
.++...++|+| |||||||||+|+|+.+| .+|+|.+ +|++++.. . .+.+|||+|++.
T Consensus 168 ~geiv~l~G~s-----G~GKSTll~~l~g~~~~---~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~ 239 (301)
T 1u0l_A 168 KGKISTMAGLS-----GVGKSSLLNAINPGLKL---RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDI 239 (301)
T ss_dssp SSSEEEEECST-----TSSHHHHHHHHSTTCCC---C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSS
T ss_pred cCCeEEEECCC-----CCcHHHHHHHhcccccc---cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcC
Confidence 34556666665 89999999999999998 4899999 99887641 1 246899999864
Q ss_pred -------CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCC
Q psy2519 113 -------FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGS 163 (622)
Q Consensus 113 -------l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~ 163 (622)
++|.+|+ ||+.|+. ... ..+...+++++++.+||. +..++++..
T Consensus 240 ~~~~~~~l~~~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~~~ 291 (301)
T 1u0l_A 240 EPEELKHYFKEFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIAESRYENYVKM 291 (301)
T ss_dssp CHHHHGGGSTTSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHhccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCCHHHHHHHHHH
Confidence 6899999 9998853 211 112345688999999995 666666444
No 145
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.78 E-value=3.5e-11 Score=125.04 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=79.1
Q ss_pred eecCCcccCCccccccccceeeeEeeeeEE--------------EEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 13 LFKNNEEVPNVDFSEIVGSVQVYAIVNLLV--------------IMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~--------------~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
..++.++++||++.| + ++++++++.+ ..+..++++.+.|+|+| |||||||+++|+|+
T Consensus 33 ~~~~~i~~~~v~~~y--~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~-----GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 33 GINEDLSLEEVAEIY--L--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSV-----AVGKSTTARVLQAL 103 (308)
T ss_dssp HHCTTCCHHHHHHTH--H--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECT-----TSSHHHHHHHHHHH
T ss_pred CCccccchHhHHHHH--H--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCC-----CCCHHHHHHHHHHH
Confidence 456789999999998 2 5777877654 00112355666777666 89999999999998
Q ss_pred CC--CCCceeeEEEE---CCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcC
Q psy2519 79 VI--DDCIIDGDIRV---NGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 130 (622)
Q Consensus 79 ~~--~~~~~~G~I~~---~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~ 130 (622)
+. | .+|+|.+ +|.......++.+|++ |+..+++.+|+.+++.+...++
T Consensus 104 l~~~~---~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 104 LSRWP---EHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HTTST---TCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HhhCC---CCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 87 7 4899999 8877644445668888 8778889999999998876554
No 146
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.75 E-value=1.5e-12 Score=133.10 Aligned_cols=142 Identities=9% Similarity=0.103 Sum_probs=94.5
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----cccccEE
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACG 105 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----~~r~~ig 105 (622)
+...+++++++.+ +.| +++.|+| |||||||+++|+|...+ |.|.++|.++.. +.++.++
T Consensus 31 ~~~~~l~~~~l~~------~~G-vlL~Gp~-----GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~ 93 (274)
T 2x8a_A 31 RNPDQFKALGLVT------PAG-VLLAGPP-----GCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVR 93 (274)
T ss_dssp HSHHHHHHTTCCC------CSE-EEEESST-----TSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHH
T ss_pred hCHHHHHHcCCCC------CCe-EEEECCC-----CCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHH
Confidence 4455677777766 333 6666665 89999999999998765 789999987743 2356788
Q ss_pred EEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHH
Q psy2519 106 FMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFAT 184 (622)
Q Consensus 106 yV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~ 184 (622)
++||+. ...|.+++.|++......+. .. ..+ .+.+..++.+.. |||||+||+.|++
T Consensus 94 ~vf~~a~~~~p~i~~~Deid~~~~~r~-----~~----~~~------~~~~~~~~~l~~--------Lsgg~~~~~~i~i 150 (274)
T 2x8a_A 94 QVFQRAKNSAPCVIFFDEVDALCPRRS-----DR----ETG------ASVRVVNQLLTE--------MDGLEARQQVFIM 150 (274)
T ss_dssp HHHHHHHHTCSEEEEEETCTTTCC------------------------CTTHHHHHHHH--------HHTCCSTTCEEEE
T ss_pred HHHHHHHhcCCCeEeeehhhhhhcccC-----CC----cch------HHHHHHHHHHHh--------hhcccccCCEEEE
Confidence 899874 56777788887755321110 00 000 122233444444 9999999999999
Q ss_pred HHhhCCCeEEEeCCCC------------CCCHHHHHHHHHH
Q psy2519 185 ELLTDPALLLCDEPTT------------GLDSFSASKLIRM 213 (622)
Q Consensus 185 aL~~~P~lLlLDEPTs------------gLD~~~~~~i~~~ 213 (622)
++..+|++| |||+. --|...+.+|++.
T Consensus 151 a~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 151 AATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp EEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred eecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence 999999986 88853 2355566555544
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.74 E-value=4.8e-10 Score=116.02 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=63.7
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE---CCEecCc--c-ccccEEEEecCCCCCC----CC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV---NGKPVEG--K-FRSACGFMYQHDLFSP----SL 117 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~---~G~~~~~--~-~r~~igyV~Q~~~l~~----~l 117 (622)
.+|+.++++|+| |||||||+|+|+|...+ .+|+|.+ +|+..+. . ++..+|||+|.+.+.+ .+
T Consensus 171 ~~G~~~~lvG~s-----G~GKSTLln~L~g~~~~---~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~l 242 (307)
T 1t9h_A 171 FQDKTTVFAGQS-----GVGKSSLLNAISPELGL---RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDI 242 (307)
T ss_dssp GTTSEEEEEESH-----HHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTC
T ss_pred cCCCEEEEECCC-----CCCHHHHHHHhcccccc---cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccC
Confidence 356677777776 89999999999999988 5899999 8887754 2 2222799999987665 68
Q ss_pred CHHHHHH--HHHH--c----CCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHH
Q psy2519 118 TVYEHLY--FMAL--L----KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR 179 (622)
Q Consensus 118 TV~E~l~--f~~~--l----~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqR 179 (622)
|+ |++. |... + +........+....++++++.++|.+.+...... ++.|++||
T Consensus 243 t~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~--------lls~~~~~ 303 (307)
T 1t9h_A 243 EE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVE--------FMTEIKDR 303 (307)
T ss_dssp CH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH--------HHHHHHTT
T ss_pred CH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHH--------HHHHHhhc
Confidence 99 8883 4310 1 1100001112234678999999998754444333 77788773
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.69 E-value=9.7e-11 Score=114.35 Aligned_cols=163 Identities=11% Similarity=0.005 Sum_probs=86.3
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
++++.+.|+|+| |||||||+++|+|++.|. | ..+|+|++++..++. +..+++....
T Consensus 20 ~~g~~v~I~G~s-----GsGKSTl~~~l~~~~~~~----g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~ 75 (208)
T 3c8u_A 20 PGRQLVALSGAP-----GSGKSTLSNPLAAALSAQ----G--------------LPAEVVPMDGFHLDN-RLLEPRGLLP 75 (208)
T ss_dssp CSCEEEEEECCT-----TSCTHHHHHHHHHHHHHT----T--------------CCEEEEESGGGBCCH-HHHGGGTCGG
T ss_pred CCCeEEEEECCC-----CCCHHHHHHHHHHHHhhc----C--------------CceEEEecCCCcCCH-HHHHHhcccc
Confidence 355666677665 899999999999998752 2 124555554433321 1222211000
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHH-HHHhhCCCeEEEeCCCCCCCHHH
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA-TELLTDPALLLCDEPTTGLDSFS 206 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA-~aL~~~P~lLlLDEPTsgLD~~~ 206 (622)
....+..... ....+.+..+...+..+....+ ...++|+||+||+++| ++++.++.++++|||..
T Consensus 76 ~~~~~~~~~~----~~~~~~l~~l~~~~~i~~p~~d----~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~------ 141 (208)
T 3c8u_A 76 RKGAPETFDF----EGFQRLCHALKHQERVIYPLFD----RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW------ 141 (208)
T ss_dssp GTTSGGGBCH----HHHHHHHHHHHHCSCEEEEEEE----TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG------
T ss_pred cCCCCchhhH----HHHHHHHHHHhcCCceecccCC----ccccCCCCCceEEcCCCcEEEECCceeccCCchh------
Confidence 0001111111 1122333333222212222222 1234899999999998 88889998888999841
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHHH
Q psy2519 207 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 264 (622)
Q Consensus 207 ~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~ 264 (622)
.++.+ .--.++.+.++....+.+...|. +..|+ +.+++.+.+
T Consensus 142 --------~~l~~-~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 142 --------RDLTA-IWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp --------GGGGG-TCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred --------HHHHH-hcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 11122 22367778887544466667663 34554 455555433
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.61 E-value=1.1e-08 Score=101.33 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=48.2
Q ss_pred hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHH-------HHhhccceeeecC
Q psy2519 188 TDPALLLCDEPTTGL--DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE-------LIDMFDKIILLAD 248 (622)
Q Consensus 188 ~~P~lLlLDEPTsgL--D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~-------i~~~~D~v~~L~~ 248 (622)
.+|+++++|||+..+ |+....+.+..+.+++++.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 665667777777777766899999999985421 4678899999964
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.61 E-value=2e-07 Score=101.87 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHh--hCCCeEEEeCCCCCCC--------HHHHHHHH
Q psy2519 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL--TDPALLLCDEPTTGLD--------SFSASKLI 211 (622)
Q Consensus 142 ~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~--~~P~lLlLDEPTsgLD--------~~~~~~i~ 211 (622)
+++.+.++.++..+..-...+ ++|.+|.+ +.++.++ .+|+++++|+++...+ .....++.
T Consensus 274 ~~~~~a~~~l~~~~l~i~d~~--------~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~ 343 (454)
T 2r6a_A 274 GKLTMAMGSLSNAGIYIDDTP--------SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS 343 (454)
T ss_dssp HHHHHHHHHHHSSCEEEECCT--------TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEECCC--------CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH
Confidence 455566666654332211112 28999987 5677776 6899999999998774 33447788
Q ss_pred HHHHHHHhcCCCEEEEEec---------c--Cc-------HHHHhhccceeeecCCce
Q psy2519 212 RMMRELTSQRKKTVLCTIH---------Q--PS-------SELIDMFDKIILLADSRT 251 (622)
Q Consensus 212 ~~l~~l~~~~g~tvi~~tH---------~--~~-------~~i~~~~D~v~~L~~G~i 251 (622)
+.|++++++.|.+||+++| + |. ..+.+.+|.|++|..++.
T Consensus 344 ~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 344 RSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 8899999878999999999 2 31 147788999999987764
No 151
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.57 E-value=6.8e-12 Score=121.84 Aligned_cols=57 Identities=14% Similarity=0.270 Sum_probs=43.5
Q ss_pred HHH-HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 182 FAT-ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 182 IA~-aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
.++ +++.+|++++|||||+++|..+..++.+.|.+..++ +...|.+ ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhcc-----CCceEEEECCC
Confidence 445 677888888999999999999999999999888763 2344631 56899888753
No 152
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.54 E-value=2.6e-09 Score=117.55 Aligned_cols=157 Identities=14% Similarity=0.027 Sum_probs=90.4
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhC--CCCCCCceeeEEEECCEecCc-cccccEEEEecCCCCCCCC--CHHHHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLS--QVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSL--TVYEHL 123 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g--~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q~~~l~~~l--TV~E~l 123 (622)
++...++.|.+ ||||||+|+.|.. +.+. ..|++.+.+.|... + ++....+|++ +|.++.
T Consensus 166 ~~pHlLIaG~T-----GSGKSt~L~~li~sLl~~~---~p~~v~l~liDpK~~e--------l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 166 KMPHLLVAGTT-----GSGASVGVNAMILSMLYKA---QPEDVRFIMIDPKMLE--------LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp GSCSEEEECCT-----TSSHHHHHHHHHHHHHTTC---CTTTEEEEEECCSSSG--------GGGGTTCTTBSSSCBCSH
T ss_pred cCceEEEECCC-----CCCHHHHHHHHHHHHHHhC---CCceEEEEEECCchhh--------hhhhccCCcccceeecCH
Confidence 34566666554 8999999999875 3333 24677666665432 1 1211222332 233333
Q ss_pred HHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCC--ccCCcCCCCccccChHHHHHH----------HHHHHHhhCCC
Q psy2519 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT--RIGSSSITQKVVLSGGERKRL----------SFATELLTDPA 191 (622)
Q Consensus 124 ~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~v~~~~~~~~~gLSgGqrqRv----------sIA~aL~~~P~ 191 (622)
..+...- .....+.++| .++++..|+.+..+. .+.. .+|+||+||. .+|+++...|.
T Consensus 230 ~~a~~~L---~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~-------~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 230 KDAANAL---RWCVNEMERR-YKLMSALGVRNLAGYNEKIAE-------ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHH---HHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHH-------HHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHH---HHHHHHHHHH-HHHHHHcCCccHHHHHHHHHH-------HhhcCCcccccccccccchhccccccccCCc
Confidence 2222110 0112333344 377888888764321 1111 2889988753 35666778898
Q ss_pred -eEEEeCCCCCCCHHHHHHHHHHHHHHH---hcCCCEEEEEeccCc
Q psy2519 192 -LLLCDEPTTGLDSFSASKLIRMMRELT---SQRKKTVLCTIHQPS 233 (622)
Q Consensus 192 -lLlLDEPTsgLD~~~~~~i~~~l~~l~---~~~g~tvi~~tH~~~ 233 (622)
++++||++.-+|.. ..++.+.+.+++ +..|.++|++||.|+
T Consensus 299 ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 78999999988833 345555555554 434789999999985
No 153
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.51 E-value=2e-08 Score=96.19 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=36.6
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l 217 (622)
|..-..+++.+|++++.+|+++++| ||++|.....++++.|.+.
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4433344578999999999999999 9999999999999988763
No 154
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.48 E-value=3.8e-11 Score=122.60 Aligned_cols=132 Identities=10% Similarity=0.055 Sum_probs=83.6
Q ss_pred CCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--
Q psy2519 21 PNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-- 98 (622)
Q Consensus 21 ~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-- 98 (622)
+++.+.| +...+++++++++ +.+ ++++|+| |||||||+++|++... .|.|.++|.++..
T Consensus 53 ~~l~~~~--~~~~~l~~~~~~~------~~g-vll~Gp~-----GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 53 KEIVEFL--KNPSRFHEMGARI------PKG-VLLVGPP-----GVGKTHLARAVAGEAR-----VPFITASGSDFVEMF 113 (278)
T ss_dssp HHHHHHH--HCHHHHHHTTCCC------CCE-EEEECCT-----TSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHST
T ss_pred HHHHHHH--HCHHHHHHcCCCC------CCe-EEEECCC-----cChHHHHHHHHHHHcC-----CCEEEecHHHHHHHH
Confidence 3444433 3345566777666 233 6666665 8999999999999875 5899999877533
Q ss_pred --cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCc-cccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 99 --KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 99 --~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
..++.+++++|+. ...|.+++.|++......+... .....+..+.+.+++ .. |||
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~--------lsg 172 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VE--------MDG 172 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH-------------HH--------HTT
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH-------------HH--------HhC
Confidence 2345577888875 3677888888885433221100 000112222333332 22 999
Q ss_pred HHHHHHHHHHHHhhCCCe
Q psy2519 175 GERKRLSFATELLTDPAL 192 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~l 192 (622)
||+||+.+++++..+|++
T Consensus 173 g~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 173 FEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp CCTTCCEEEEEEESCTTS
T ss_pred CCCCCCEEEEEecCCchh
Confidence 999999999999999976
No 155
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.43 E-value=5.6e-11 Score=119.44 Aligned_cols=140 Identities=11% Similarity=0.098 Sum_probs=89.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+.+++++.+.| +...+++++++++ +.+ +.+.|+| |+|||||+++|++... .|.|.++|.++
T Consensus 25 ~~~l~~l~~~~--~~~~~~~~~~~~~------~~g-~ll~G~~-----G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 25 KEELKEIVEFL--KNPSRFHEMGARI------PKG-VLLVGPP-----GVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHHHHHHH--HCHHHHHHTTCCC------CSE-EEEECCT-----TSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHHHHHHH--HCHHHHHHcCCCC------CCe-EEEECCC-----CCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 34566666654 4445677777766 233 6666665 8999999999999875 58899988765
Q ss_pred Cc----cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCc-cccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 97 EG----KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
.. ..++.+++++|+. ...|.+++.|++......+... .....+..+.+.+++. .
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~-------------~------- 145 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------E------- 145 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHH-------------H-------
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHH-------------H-------
Confidence 32 2345577888874 3667788888884432221100 0011122223333332 2
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCC
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEP 198 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEP 198 (622)
|||||+||+.+++++..+|++ +|++
T Consensus 146 -l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 146 -MDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp -HHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred -HhCCCCCCCEEEEEccCCchh--CCHH
Confidence 999999999999999999987 4544
No 156
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.43 E-value=4.2e-07 Score=93.63 Aligned_cols=141 Identities=9% Similarity=0.084 Sum_probs=86.8
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~ 128 (622)
+++.+.++|+| ||||||+++.|++...+. +| ++++++.+|.. ..++.|++...+.
T Consensus 104 ~g~vi~lvG~~-----GsGKTTl~~~LA~~l~~~---~G--------------~~V~lv~~D~~---r~~a~eqL~~~~~ 158 (296)
T 2px0_A 104 HSKYIVLFGST-----GAGKTTTLAKLAAISMLE---KH--------------KKIAFITTDTY---RIAAVEQLKTYAE 158 (296)
T ss_dssp CSSEEEEEEST-----TSSHHHHHHHHHHHHHHT---TC--------------CCEEEEECCCS---STTHHHHHHHHHT
T ss_pred CCcEEEEECCC-----CCCHHHHHHHHHHHHHHh---cC--------------CEEEEEecCcc---cchHHHHHHHHHH
Confidence 45566666665 899999999999988752 35 24666666542 3355565544321
Q ss_pred cCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q psy2519 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 208 (622)
Q Consensus 129 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~ 208 (622)
..|+.... . .+. +.-+.+++ .+.+|+++|+| |+|+|+....
T Consensus 159 ---------------------~~gl~~~~-----~--------~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~ 199 (296)
T 2px0_A 159 ---------------------LLQAPLEV-----C--------YTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQ 199 (296)
T ss_dssp ---------------------TTTCCCCB-----C--------SSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHH
T ss_pred ---------------------hcCCCeEe-----c--------CCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHH
Confidence 12222110 0 122 23355555 45999999999 9999987765
Q ss_pred HHHHHHHHHH--hcCCCEEEE-EeccCcHHHHhhccceeeecCCceEEe
Q psy2519 209 KLIRMMRELT--SQRKKTVLC-TIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 209 ~i~~~l~~l~--~~~g~tvi~-~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
.+.++.+-+. ...+.++++ ++|+. .++.+.++++..+..+.++..
T Consensus 200 ~~~el~~~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 200 YIDELKETIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHHHHSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHHHHHHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 5554443332 112334555 48884 678888998887777777763
No 157
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.42 E-value=1.2e-07 Score=98.00 Aligned_cols=108 Identities=10% Similarity=0.134 Sum_probs=73.1
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~ 128 (622)
+++.+.++|+| ||||||+++.|++.+.+. .|+|.+.+.|..+ . + ..|
T Consensus 103 ~~~vi~ivG~~-----GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r---~--~-------------a~e------- 149 (306)
T 1vma_A 103 PPFVIMVVGVN-----GTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR---A--A-------------AIE------- 149 (306)
T ss_dssp SCEEEEEECCT-----TSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC---H--H-------------HHH-------
T ss_pred CCeEEEEEcCC-----CChHHHHHHHHHHHHHhc---CCEEEEEcccccc---H--H-------------HHH-------
Confidence 44455666654 899999999999998763 5788876665321 0 0 011
Q ss_pred cCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHH---HHHHHHhhCCCeEEEeCCCCCCCHH
Q psy2519 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL---SFATELLTDPALLLCDEPTTGLDSF 205 (622)
Q Consensus 129 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRv---sIA~aL~~~P~lLlLDEPTsgLD~~ 205 (622)
....+.+.+++.. +.. .|||+.+++ ++++++..+|+++++|||.. ..
T Consensus 150 --------------qL~~~~~~~gl~~-----~~~--------~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~ 199 (306)
T 1vma_A 150 --------------QLKIWGERVGATV-----ISH--------SEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LH 199 (306)
T ss_dssp --------------HHHHHHHHHTCEE-----ECC--------STTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CS
T ss_pred --------------HHHHHHHHcCCcE-----Eec--------CCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hh
Confidence 1223445566542 222 789999999 99999999999999999974 34
Q ss_pred HHHHHHHHHHHHHh
Q psy2519 206 SASKLIRMMRELTS 219 (622)
Q Consensus 206 ~~~~i~~~l~~l~~ 219 (622)
....+++.++++.+
T Consensus 200 ~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 200 TKKNLMEELRKVHR 213 (306)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 55566666666543
No 158
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.32 E-value=1e-08 Score=116.02 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=99.3
Q ss_pred ccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccE
Q psy2519 25 FSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSAC 104 (622)
Q Consensus 25 ~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~i 104 (622)
+...+|..++++.+++.+ .+++.+.+.|++ |+|||||+++|++...+. .-|.+.+++.+... ....+
T Consensus 40 l~~i~G~~~~l~~l~~~i-----~~g~~vll~Gp~-----GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~-~~p~i 106 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAA-----NQKRHVLLIGEP-----GTGKSMLGQAMAELLPTE--TLEDILVFPNPEDE-NMPRI 106 (604)
T ss_dssp HHHCCSCHHHHHHHHHHH-----HTTCCEEEECCT-----TSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCT-TSCEE
T ss_pred cceEECchhhHhhccccc-----cCCCEEEEEeCC-----CCCHHHHHHHHhccCCcc--cCCeEEEeCCcccc-cCCcE
Confidence 333457777888888777 456666666665 899999999999999874 34889988876643 34568
Q ss_pred EEEecCC----------------------CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccC
Q psy2519 105 GFMYQHD----------------------LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 162 (622)
Q Consensus 105 gyV~Q~~----------------------~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~ 162 (622)
++++|.. ..++.+++.+|+.....-..+...-.. .. ...-+.+|..+.....
T Consensus 107 ~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~---~~~~~L~G~~~~~~~~-- 180 (604)
T 3k1j_A 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TG---AHAGALLGDVRHDPFQ-- 180 (604)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TT---CCHHHHHCEECCCCC---
T ss_pred EEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CC---CCHHhcCceEEechhh--
Confidence 8988753 111222222222110000000000000 00 0011222221111111
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~ 216 (622)
..++|+|++|++..++....++.+|++||... |++.....+.+.|.+
T Consensus 181 ------~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 181 ------SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ---------CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ------cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 23499999999999999999999999999988 899888888877764
No 159
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.29 E-value=7.5e-07 Score=93.90 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH---HhcCCCEEEEEeccCcH-----
Q psy2519 178 KRLSFATELLTD--PALLLCDEPTTGL----------DS---FSASKLIRMMREL---TSQRKKTVLCTIHQPSS----- 234 (622)
Q Consensus 178 qRvsIA~aL~~~--P~lLlLDEPTsgL----------D~---~~~~~i~~~l~~l---~~~~g~tvi~~tH~~~~----- 234 (622)
+-+.++++++.+ |+++++|||++.+ |+ ..++.+.+.++++ +++.|.|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888755 9999999999998 33 2333445555555 35579999999996421
Q ss_pred ----------HHHhhccceeeecCCceEEecC
Q psy2519 235 ----------ELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 235 ----------~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
.+...+|.++.++.+++...|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2567899999888777665554
No 160
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.26 E-value=3.7e-10 Score=111.88 Aligned_cols=200 Identities=8% Similarity=-0.055 Sum_probs=77.0
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHh-CCCCCCCceeeEEEECCEecCccccccEEEEecC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFL-SQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 110 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~-g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~ 110 (622)
.+..+++|+++ .+|+.++++|+| |||||||+++|+ |+.++ ..+.+.+..++........++|++++
T Consensus 14 ~~~~~~~sl~v-----~~G~ii~l~Gp~-----GsGKSTl~~~L~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~~ 80 (231)
T 3lnc_A 14 AQTQGPGSMLK-----SVGVILVLSSPS-----GCGKTTVANKLLEKQKNN---IVKSVSVTTRAARKGEKEGKDYYFVD 80 (231)
T ss_dssp --------CCE-----ECCCEEEEECSC-----C----CHHHHHHC----C---EEECCCEESSCCCTTCCBTTTBEECC
T ss_pred hcccCCCCccc-----CCCCEEEEECCC-----CCCHHHHHHHHHhcCCCC---cccccccCCCCCCccccCCCeEEEec
Confidence 45577889988 466677777666 899999999999 98754 12222111111111112234577776
Q ss_pred CCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHH-HHH-HHHh
Q psy2519 111 DLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL-SFA-TELL 187 (622)
Q Consensus 111 ~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRv-sIA-~aL~ 187 (622)
...++.+++.+++......... ..... +.++++++.-. .-..+-.+. -...-+++. .-+ ..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~-~vild~~~~---------g~~~~~~~~~~~~~~v~v 146 (231)
T 3lnc_A 81 REEFLRLCSNGEIIEHAEVFGNFYGVPR----KNLEDNVDKGV-STLLVIDWQ---------GAFKFMEMMREHVVSIFI 146 (231)
T ss_dssp HHHHHHHHHTTCEEEEEEETTEEEEEEC----TTHHHHHHHTC-EEEEECCHH---------HHHHHHHHSGGGEEEEEE
T ss_pred HHHhhhhhhcCceehhhhhccccCCCCH----HHHHHHHHcCC-eEEEEcCHH---------HHHHHHHhcCCCeEEEEE
Confidence 5444444443333211111100 00111 11333343311 001111000 011223333 111 2335
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc----CCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHH
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ----RKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 259 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~----~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 259 (622)
..|+...+||++.+.|..+..++.+.+++...+ ....+|++.|++ +++.+..++++-..+++..+.++.++
T Consensus 147 ~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~-e~~~~~l~~~i~~~~~~~~~~~~~~~ 221 (231)
T 3lnc_A 147 MPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDI-EETADRISNILRAEQMKTCRQVGLRE 221 (231)
T ss_dssp ECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSH-HHHHHHHHHHHHHHHTBGGGEESHHH
T ss_pred ECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCH-HHHHHHHHHHHHHHhhccccCcchhh
Confidence 677777888999999988877777666654321 234677777774 56666666666555555555444443
No 161
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.25 E-value=2.1e-06 Score=88.33 Aligned_cols=133 Identities=12% Similarity=-0.021 Sum_probs=85.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
..++++++.| ++.. ++++++ +++.+.++|+| |+||||++..|++...+ ..|+|.+.+.+..
T Consensus 77 ~~~~~l~~~~--~~~~--~~i~~~-------~~~~i~i~g~~-----G~GKTT~~~~la~~~~~---~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEAL--GGEA--RLPVLK-------DRNLWFLVGLQ-----GSGKTTTAAKLALYYKG---KGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHT--TSSC--CCCCCC-------SSEEEEEECCT-----TTTHHHHHHHHHHHHHH---TTCCEEEEECCSS
T ss_pred HHHHHHHHHH--CCCC--ceeecC-------CCeEEEEECCC-----CCCHHHHHHHHHHHHHH---cCCeEEEecCCcc
Confidence 3456777765 3322 344442 34556666544 89999999999999876 3688888776543
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
+... .+.+ ..+.+..++....... +-.-.+.
T Consensus 138 ~~~~------------------~~ql---------------------~~~~~~~~l~~~~~~~----------~~~p~~l 168 (295)
T 1ls1_A 138 RPAA------------------REQL---------------------RLLGEKVGVPVLEVMD----------GESPESI 168 (295)
T ss_dssp CHHH------------------HHHH---------------------HHHHHHHTCCEEECCT----------TCCHHHH
T ss_pred cHhH------------------HHHH---------------------HHhcccCCeEEEEcCC----------CCCHHHH
Confidence 2100 0000 0112334554321110 0233455
Q ss_pred HHHHHHHHHhhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q psy2519 178 KRLSFATELLTDPALLLCDEP-TTGLDSFSASKLIRMMRELT 218 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEP-TsgLD~~~~~~i~~~l~~l~ 218 (622)
+|.+++.+...+++++|+||| +.++|.....++.+..+.+.
T Consensus 169 ~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 169 RRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 789999998899999999999 99999988888888877763
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.10 E-value=4.6e-07 Score=96.07 Aligned_cols=144 Identities=16% Similarity=0.129 Sum_probs=84.5
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCCCC--------CceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHH---
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVIDD--------CIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYE--- 121 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--------~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E--- 121 (622)
++++|.+ |||||||+|.|+|..... ...+|+|.++|.++. +....|++.|.+ ...|..
T Consensus 182 V~lvG~~-----naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp----~~lve~f~~ 250 (364)
T 2qtf_A 182 IGIVGYT-----NSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIP----PQIVDAFFV 250 (364)
T ss_dssp EEEECBT-----TSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCC----GGGHHHHHH
T ss_pred EEEECCC-----CCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCC----HHHHHHHHH
Confidence 5566665 799999999999987520 025799999997652 122345544321 111221
Q ss_pred HHHHHH--Hc--C-CC-cccc--HHHHHHHHHHHHHHhCCCccc----CCccCCcCCCCccccChHHHHHHHHH----HH
Q psy2519 122 HLYFMA--LL--K-LD-RRVK--AYQRIALINSLLIELGLMNSQ----HTRIGSSSITQKVVLSGGERKRLSFA----TE 185 (622)
Q Consensus 122 ~l~f~~--~l--~-~~-~~~~--~~~~~~~v~~~l~~lgL~~~~----~~~v~~~~~~~~~gLSgGqrqRvsIA----~a 185 (622)
.+.... .. . .+ .... ..+..+.+.++++.+++.+.. ..++.. +|+|+++|+.++ ++
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl--------~~~~~~~~~~~~~~l~~~ 322 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDK--------INGDLYKKLDLVEKLSKE 322 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGG--------CCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCC--------CCchHHHHHHHHHHHHHH
Confidence 111000 00 0 00 0111 223344567888888876543 233333 788889988887 55
Q ss_pred H-hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy2519 186 L-LTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 219 (622)
Q Consensus 186 L-~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~ 219 (622)
+ ..+|++ +|+|++|.....++.+.|.+...
T Consensus 323 l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 323 LYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred hcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 334444 89999999999999999988765
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.05 E-value=8e-07 Score=85.23 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=33.0
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy2519 180 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 218 (622)
Q Consensus 180 vsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~ 218 (622)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887754
No 164
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.98 E-value=1.1e-06 Score=96.12 Aligned_cols=52 Identities=10% Similarity=-0.059 Sum_probs=44.8
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
.++++++|+++ .+ +.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i-----~~-e~~~liG~n-----GsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDF-----DE-LVTTLSGGN-----GAGKSTTMAGFVTALIP---DLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEEC-----CS-SEEEEECCT-----TSSHHHHHHHHHHHHCC---CTTTCCCCCTTSC
T ss_pred cccccceEEEE-----cc-ceEEEECCC-----CCcHHHHHHHHhcCCCC---CCCEEEECCEEcc
Confidence 45789999998 55 777788776 89999999999999998 4899999999875
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.92 E-value=2.4e-06 Score=90.02 Aligned_cols=149 Identities=11% Similarity=-0.004 Sum_probs=81.0
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE-EECCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI-RVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I-~~~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
|+.+.+.|+ ||||||||+..+++...+. .|.+ +++++.... ...+++|+.+|+..+....++.+.+....
T Consensus 61 G~i~~I~Gp-----pGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQ-----ESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEES-----TTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECC-----CCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 444444444 4899999999999876542 3544 566654322 23345566666544444445554443211
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccCh--HHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSG--GERKRLSFATELLTDPALLLCDEPTTGLDS 204 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSg--GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~ 204 (622)
.+++.-+..- ..|.. ...+| ...++| |++|+...||++.
T Consensus 133 ------------------~l~~~~~~dlvVIDSi-~~l~~--~~el~g~~G~~q~~~qar~la----------------- 174 (356)
T 3hr8_A 133 ------------------ELVRSGVVDLIVVDSV-AALVP--RAEIEGAMGDMQVGLQARLMS----------------- 174 (356)
T ss_dssp ------------------HHHHTSCCSEEEEECT-TTCCC--HHHHTTCCCSSCSSHHHHHHH-----------------
T ss_pred ------------------HHhhhcCCCeEEehHh-hhhcC--hhhhcccchhhHHHHHHHHHH-----------------
Confidence 1111111110 00110 00001 001333 5666666666654
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeccC---------------cHHHHhhccceeeecC
Q psy2519 205 FSASKLIRMMRELTSQRKKTVLCTIHQP---------------SSELIDMFDKIILLAD 248 (622)
Q Consensus 205 ~~~~~i~~~l~~l~~~~g~tvi~~tH~~---------------~~~i~~~~D~v~~L~~ 248 (622)
++++.|++++++.|.|||++.|-. ...+.+.+|-++.+..
T Consensus 175 ----~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 175 ----QALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp ----HHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred ----HHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEe
Confidence 567778888887899999998861 1125677888888875
No 166
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.90 E-value=6.6e-07 Score=86.08 Aligned_cols=65 Identities=6% Similarity=0.121 Sum_probs=46.2
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----cccccEEEEecCCCCCCCCCHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHL 123 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l 123 (622)
.+|+.++++|+| |||||||+++|+|+.+ .+.++|.+... ..++.++|++|++.+++.+++.+++
T Consensus 5 ~~g~ii~l~Gp~-----GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 5 NKANLFIISAPS-----GAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp CCCCEEEEECCT-----TSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCCcEEEEECcC-----CCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 356667777776 8999999999999853 35556655443 2356789999988777776666654
Q ss_pred H
Q psy2519 124 Y 124 (622)
Q Consensus 124 ~ 124 (622)
.
T Consensus 73 ~ 73 (205)
T 3tr0_A 73 L 73 (205)
T ss_dssp E
T ss_pred E
Confidence 3
No 167
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.75 E-value=3.9e-05 Score=80.20 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=46.0
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CCEEEEEec
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR-KKTVLCTIH 230 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~-g~tvi~~tH 230 (622)
||.++++|++.|...+.++++.+.|+|... ..++.+.++++.++. |..+|++-|
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 999999999999999999999999998654 447778888887766 788888866
No 168
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.73 E-value=5.3e-05 Score=87.92 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=60.9
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEEE-eccCcHHHHhhccceeee-
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDKIILL- 246 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~~-tH~~~~~i~~~~D~v~~L- 246 (622)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+... ..++|+++ ||++ ..+.+++++.-++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~-~~l~~~~~~~~vi~ 266 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDA-EKFQRYFNDAPLLA 266 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCC-HHHHHHTTSCCEEE
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccH-HHHHHHhcCCCccc
Confidence 3489999999999999999999999999996 9998877777777766543 45677774 9986 5777777754433
Q ss_pred cCCc
Q psy2519 247 ADSR 250 (622)
Q Consensus 247 ~~G~ 250 (622)
..|+
T Consensus 267 v~gr 270 (773)
T 2xau_A 267 VPGR 270 (773)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 3444
No 169
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.70 E-value=2.5e-05 Score=82.36 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=47.6
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe--ccCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCD-EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI--HQPS 233 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLD-EPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~t--H~~~ 233 (622)
+|+||+|++. +.+...++-++++| +|+.|+|.....++++.+.+... +..+|++. ||..
T Consensus 232 ~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 232 RNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp SCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred hhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 8999998876 55556777889999 99999999998888888877643 67788877 8853
No 170
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.66 E-value=5.6e-06 Score=81.77 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=35.3
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc------------cccccEEEEecC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG------------KFRSACGFMYQH 110 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~------------~~r~~igyV~Q~ 110 (622)
+.++++|+| ||||||||++|+|.+.| .+|+|.++|.++.. ..++.++||+|+
T Consensus 28 ~~~~i~Gpn-----GsGKSTll~~i~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 28 LVTTLSGGN-----GAGKSTTMAAFVTALIP---DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHHSCC-----SHHHHHHHHHHHHHHSC---CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred cEEEEECCC-----CCCHHHHHHHHhccccc---CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566666666 89999999999999998 48999999988721 136789999984
No 171
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.62 E-value=0.00017 Score=75.90 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=41.8
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEec
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH 230 (622)
.++.++++.++++..+.+|+++++.-..+..|... .+..++++++......++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999888774334445433 55667777776533368888776
No 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.51 E-value=3.6e-06 Score=81.04 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=39.5
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCcc---ccccEEEEecCCCCCCCCCHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGK---FRSACGFMYQHDLFSPSLTVY 120 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~---~r~~igyV~Q~~~l~~~lTV~ 120 (622)
+++.++++|+| |||||||+++|++++ |.+.++|.++... .+...|+++|+....+.+++.
T Consensus 28 ~g~~i~l~G~~-----GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 90 (200)
T 4eun_A 28 PTRHVVVMGVS-----GSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSL 90 (200)
T ss_dssp CCCEEEEECCT-----TSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCcEEEEECCC-----CCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHH
Confidence 45556666665 899999999999864 7888988776431 223457778764443333333
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.49 E-value=0.00021 Score=78.17 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH---hcCCCEEEEEeccC
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEP----------TTGLDSFSASKLIRMMRELT---SQRKKTVLCTIHQP 232 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEP----------TsgLD~~~~~~i~~~l~~l~---~~~g~tvi~~tH~~ 232 (622)
|++++|..++++....|.+|++||+ ++|.|+.....+.+++..+- ...+..||.+||+|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 5678888899999999999999999 44677776666777776663 23578899999986
No 174
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.45 E-value=1.6e-07 Score=99.77 Aligned_cols=138 Identities=8% Similarity=-0.026 Sum_probs=73.8
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCC
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 112 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~ 112 (622)
++++++++.+ .+++.+++.|++ |||||||+++|+|.. +|++...+.+ ....+..+|++||...
T Consensus 157 ~~l~~~~~~i-----~~~~~i~l~G~~-----GsGKSTl~~~l~~~~------~g~~~~~~~~-~~~~~~~lg~~~q~~~ 219 (377)
T 1svm_A 157 DFLKCMVYNI-----PKKRYWLFKGPI-----DSGKTTLAAALLELC------GGKALNVNLP-LDRLNFELGVAIDQFL 219 (377)
T ss_dssp HHHHHHHHCC-----TTCCEEEEECST-----TSSHHHHHHHHHHHH------CCEEECCSSC-TTTHHHHHGGGTTCSC
T ss_pred HHHHhccccc-----CCCCEEEEECCC-----CCCHHHHHHHHHhhc------CCcEEEEecc-chhHHHHHHHhcchhH
Confidence 5677777777 455566666554 899999999999853 5776652111 1112234667777653
Q ss_pred -CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHH---HhCCCc-------------ccCCccCCcCCCCccccChH
Q psy2519 113 -FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLI---ELGLMN-------------SQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 113 -l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~---~lgL~~-------------~~~~~v~~~~~~~~~gLSgG 175 (622)
++...+...++ ...+.. . ........+.+.++ .+.+.. ..+..+ .-+++|
T Consensus 220 ~l~dd~~~~~~~--~r~l~~--~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~--------~~l~~~ 286 (377)
T 1svm_A 220 VVFEDVKGTGGE--SRDLPS--G-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNE--------YSVPKT 286 (377)
T ss_dssp EEETTCCCSTTT--TTTCCC--C-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECS--------CCCCHH
T ss_pred HHHHHHHHHHHH--Hhhccc--c-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhH--------HhhcHH
Confidence 33343332211 000100 0 00000112223332 111110 112222 238999
Q ss_pred HHHHHHHHHHHhhCCCeEE-EeCCCC
Q psy2519 176 ERKRLSFATELLTDPALLL-CDEPTT 200 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLl-LDEPTs 200 (622)
+++|+..+.+++.+|++++ ||+|+.
T Consensus 287 ~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 287 LQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp HHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred HHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 9999998877788888877 888776
No 175
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.45 E-value=1.7e-07 Score=103.14 Aligned_cols=115 Identities=12% Similarity=0.106 Sum_probs=73.4
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCcc----ccccEEEEecCCC-CCCCCCHHHHHHHHH
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGK----FRSACGFMYQHDL-FSPSLTVYEHLYFMA 127 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~----~r~~igyV~Q~~~-l~~~lTV~E~l~f~~ 127 (622)
+++.|++ |+|||||+++|++... .|.+.++|.++... ..+.+..+||+.. ..|.+.+.|++....
T Consensus 67 vLL~Gpp-----GtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~ 136 (499)
T 2dhr_A 67 VLLVGPP-----GVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 136 (499)
T ss_dssp EEEECSS-----SSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTC
T ss_pred EEEECCC-----CCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 5666665 8999999999999864 58889998776431 2344566777643 456666666663322
Q ss_pred HcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCC
Q psy2519 128 LLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200 (622)
Q Consensus 128 ~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTs 200 (622)
..+.. ......+..+.+..++. . |||||+|+..|+++...+|++ |||+..
T Consensus 137 ~~r~~~~~~~~~e~~~~l~~LL~-------------~--------Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 137 RKRGSGVGGGNDEREQTLNQLLV-------------E--------MDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp CCSSSSTTTSSHHHHHHHHHHHH-------------H--------GGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred HhhccCcCCCcHHHHHHHHHHHH-------------H--------hcccccCccEEEEEecCChhh--cCcccc
Confidence 11110 00011223333444443 2 889999998899999999987 798864
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.26 E-value=0.00011 Score=79.73 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=51.7
Q ss_pred hCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee-ecCCceEEecChH
Q psy2519 188 TDPALLLCDEPTTGLDS-FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL-LADSRTAFIGSKD 258 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~-~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~-L~~G~iv~~G~~~ 258 (622)
.+|++|++||+..-.+. .+..++...+.++.+ .|+.+|+++|++..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999877664 677889999998876 6899999999864443334455444 4567777776654
No 177
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.20 E-value=8e-06 Score=90.99 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=31.2
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee-EEE-ECCEec
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG-DIR-VNGKPV 96 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G-~I~-~~G~~~ 96 (622)
+|+.++++|.| |||||||+++|+|++.+. +| +|. ++|.++
T Consensus 368 ~G~iI~LiG~s-----GSGKSTLar~La~~L~~~---~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLS-----GAGKSTLARALAARLMEM---GGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESS-----CHHHHHHHHHHHHHHHTT---CSSCEEEESSHHH
T ss_pred cceEEEEECCC-----CChHHHHHHHHHHhhccc---CCceEEEECCcHH
Confidence 45566667665 899999999999999873 55 784 888765
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.11 E-value=6.1e-06 Score=79.45 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=36.6
Q ss_pred CccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE--EECCEecCc
Q psy2519 22 NVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI--RVNGKPVEG 98 (622)
Q Consensus 22 ~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I--~~~G~~~~~ 98 (622)
|++.+ .|...+.+..++.. .+++.++++|++ |||||||.++|++++.. .|.+ .++|.++..
T Consensus 4 ~~~~~--~~~~~~~~~~~~~~-----~~g~~i~l~G~s-----GsGKSTl~~~La~~l~~----~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 4 NIKWH--ECSVEKVDRQRLLD-----QKGCVIWVTGLS-----GSGKSTLACALNQMLYQ----KGKLCYILDGDNVRH 66 (200)
T ss_dssp --------CCCCHHHHHHHHT-----SCCEEEEEECST-----TSSHHHHHHHHHHHHHH----TTCCEEEEEHHHHTT
T ss_pred CCccc--ccccCHHHHHHhcC-----CCCeEEEEECCC-----CCCHHHHHHHHHHHHHh----cCceEEEecCchhhh
Confidence 44443 35555544444332 345555555554 89999999999998763 5776 888876654
No 179
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.11 E-value=3.7e-05 Score=77.07 Aligned_cols=53 Identities=6% Similarity=-0.135 Sum_probs=32.0
Q ss_pred CcccCCc-cccccccceeeeEeeeeEEEEcccCC---CcceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 17 NEEVPNV-DFSEIVGSVQVYAIVNLLVIMDQTAS---TSKTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 17 ~~~~~~~-~~~~~~g~~~~l~~v~l~~~~~~~~~---~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.++++|| +|+| .++.++|+++|+++ .+ ++.++++|++ ||||||+.++|++.+.
T Consensus 17 ~l~~~~~~~~~~-~~~~~~l~~~~~~i-----~~~l~g~~i~l~G~~-----GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPF-DEEQQILKKKAEEV-----KPYLNGRSMYLVGMM-----GSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CHHHHHHHHTT-----HHHHTTCCEEEECST-----TSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEe-cCcchhhhhhhhhh-----hhhcCCCEEEEECCC-----CCCHHHHHHHHHHhcC
Confidence 6899999 9986 36678999999988 45 6677777665 8999999999998653
No 180
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.10 E-value=4.5e-05 Score=76.31 Aligned_cols=55 Identities=5% Similarity=-0.031 Sum_probs=43.5
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHh---CCCCCCCceeeEEE--------ECCEecCc-----cccccEEEEecCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFL---SQVIDDCIIDGDIR--------VNGKPVEG-----KFRSACGFMYQHD 111 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~---g~~~~~~~~~G~I~--------~~G~~~~~-----~~r~~igyV~Q~~ 111 (622)
++..++|+|++ ||||||++++|+ |+..+ .+|.|. .+|.++.. .+++.+++++|++
T Consensus 26 ~g~~I~I~G~~-----GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 26 IAPVITVDGPS-----GAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TSCEEEEECCT-----TSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCcEEEEECCC-----CCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 45566666665 899999999999 88877 589998 89988743 3677899999854
No 181
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.10 E-value=0.00074 Score=69.77 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=45.3
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCE--EEEEecc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT--VLCTIHQ 231 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~t--vi~~tH~ 231 (622)
||.++++|+..|...+.++++.+.|+|... ..++.+.++++.++.|.. +|++-|-
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 899999999999999999999999998643 456777788887756777 8888774
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.09 E-value=7.1e-05 Score=72.01 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=41.8
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH--Hhhccceeee
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL--IDMFDKIILL 246 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i--~~~~D~v~~L 246 (622)
.+.|+.+|..++..+..+|+.+..+ ++.++|.....+.+.+++. .+.++|+.+|... +. .+.||.++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~-e~~~~~~~d~vi~l 130 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLI-ENKLTALCDRILVV 130 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTT-TTTCGGGCSEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhh-hcCcHhhCCEEEEE
Confidence 4678899999999888888754333 3456676666665555432 2558888888753 33 4567877776
No 183
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.06 E-value=0.0006 Score=70.02 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=48.0
Q ss_pred cChHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhcCCC--EEEEEeccCcHHHHhhcccee
Q psy2519 172 LSGGERKRLSFATELL--TDPALLLCDEPTTGLDSFS-ASKLIRMMRELTSQRKK--TVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~--~~P~lLlLDEPTsgLD~~~-~~~i~~~l~~l~~~~g~--tvi~~tH~~~~~i~~~~D~v~ 244 (622)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+++++++.|. .+.++.|+- ..+.+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 888886 5666676 68999998 7899877 67788888888864454 566677773 56777777664
No 184
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.97 E-value=0.00026 Score=80.74 Aligned_cols=125 Identities=8% Similarity=-0.060 Sum_probs=72.6
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----cccccEEEEecCCCCCCCCCHHHHHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLY 124 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~ 124 (622)
++..++++|.+ |||||||++.|.+...+. ...|+| .+|..+.+ +.++.+++.+|...+... ++..
T Consensus 8 ~~~~i~IiG~~-----gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~--- 76 (665)
T 2dy1_A 8 MIRTVALVGHA-----GSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV--- 76 (665)
T ss_dssp CEEEEEEEEST-----TSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE---
T ss_pred CCcEEEEECCC-----CChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE---
Confidence 45567777775 899999999999765431 136777 56665543 235566666665433221 1100
Q ss_pred HHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q psy2519 125 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204 (622)
Q Consensus 125 f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~ 204 (622)
...|+. |. . .++ .......-..+..++++| |+.|+|+
T Consensus 77 ------------------------------nliDTp-G~-----~-~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~ 113 (665)
T 2dy1_A 77 ------------------------------FLLDAP-GY-----G-DFV-----GEIRGALEAADAALVAVS-AEAGVQV 113 (665)
T ss_dssp ------------------------------EEEECC-CS-----G-GGH-----HHHHHHHHHCSEEEEEEE-TTTCSCH
T ss_pred ------------------------------EEEeCC-Cc-----c-chH-----HHHHHHHhhcCcEEEEEc-CCcccch
Confidence 011211 11 0 011 111222235678899999 9999998
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 205 FSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 205 ~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
.+. +.++.+.+ .+.++|++.|..
T Consensus 114 qt~----~~~~~~~~-~~ip~ilv~NKi 136 (665)
T 2dy1_A 114 GTE----RAWTVAER-LGLPRMVVVTKL 136 (665)
T ss_dssp HHH----HHHHHHHH-TTCCEEEEEECG
T ss_pred hHH----HHHHHHHH-ccCCEEEEecCC
Confidence 776 33333333 588899999875
No 185
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.92 E-value=0.0017 Score=68.02 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=34.8
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCCEEEEEeccC
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTS--QRKKTVLCTIHQP 232 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~--~~g~tvi~~tH~~ 232 (622)
.+|.++++||+... |+.....+.+.+.++.. ..+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888876653 1378899999986
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.87 E-value=0.0057 Score=61.90 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHhc---CCCEEEEEeccC---cHHH
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSF----------SASKLIRMMRELTSQ---RKKTVLCTIHQP---SSEL 236 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~----------~~~~i~~~l~~l~~~---~g~tvi~~tH~~---~~~i 236 (622)
+++++.|..++.+...+|.+|++||+.+.++.. ....++..+...... .+..||.+|++| ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777788888899999999998765532 222344444433211 235677788864 2334
Q ss_pred Hhhccceeee
Q psy2519 237 IDMFDKIILL 246 (622)
Q Consensus 237 ~~~~D~v~~L 246 (622)
.+.|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4455554443
No 187
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.81 E-value=0.00034 Score=66.86 Aligned_cols=28 Identities=7% Similarity=-0.060 Sum_probs=22.3
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+|+.++++|++ |||||||+++|+++..|
T Consensus 5 ~g~~i~l~G~~-----GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 5 KGLLIVLSGPS-----GVGKGTVRKRIFEDPST 32 (207)
T ss_dssp CCCEEEEECST-----TSCHHHHHHHHHHCTTC
T ss_pred CCCEEEEECCC-----CCCHHHHHHHHHHhhCC
Confidence 45566666665 89999999999999866
No 188
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.72 E-value=0.00019 Score=74.46 Aligned_cols=69 Identities=4% Similarity=0.050 Sum_probs=46.5
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--------cc-----cccEEEE-ecCCCC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--------KF-----RSACGFM-YQHDLF 113 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--------~~-----r~~igyV-~Q~~~l 113 (622)
++++.+.++|+| |+||||++..|++.+.+ ..|+|.+.+.++.+ .+ +..++++ +|....
T Consensus 103 ~~~~vI~ivG~~-----G~GKTT~~~~LA~~l~~---~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 103 NRLNIFMLVGVN-----GTGKTTSLAKMANYYAE---LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp TSCEEEEEESST-----TSSHHHHHHHHHHHHHH---TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred CCCeEEEEECCC-----CCCHHHHHHHHHHHHHH---CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 344455555553 89999999999999876 36899998877642 12 5678898 676544
Q ss_pred CCCCCHHHHHH
Q psy2519 114 SPSLTVYEHLY 124 (622)
Q Consensus 114 ~~~lTV~E~l~ 124 (622)
.|..++.+++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44434444443
No 189
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.56 E-value=0.00071 Score=63.44 Aligned_cols=27 Identities=19% Similarity=-0.022 Sum_probs=22.3
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
++..+|+|+| |||||||+++|.+.+.+
T Consensus 26 ~g~~~i~G~N-----GsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 26 KGFTAIVGAN-----GSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SSEEEEEECT-----TSSHHHHHHHHHHHTTC
T ss_pred CCcEEEECCC-----CCCHHHHHHHHHHHHcC
Confidence 4477777777 89999999999998765
No 190
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.54 E-value=0.011 Score=61.58 Aligned_cols=55 Identities=11% Similarity=0.148 Sum_probs=40.2
Q ss_pred HHHHHHHHHh----hCCCeEEEeCCCCCCCHH------------HHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 178 KRLSFATELL----TDPALLLCDEPTTGLDSF------------SASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 178 qRvsIA~aL~----~~P~lLlLDEPTsgLD~~------------~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+.+..++.++ .+++++++|+.++-.+.. ...+++..|++++++.|.+||++.|..
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 4555566666 569999999999865432 135677778888887899999998863
No 191
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.54 E-value=0.00047 Score=65.28 Aligned_cols=25 Identities=20% Similarity=0.184 Sum_probs=20.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
.++++|+| |||||||+++|+|+.++
T Consensus 3 ii~l~Gps-----GaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 3 PIVISGPS-----GTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEESSS-----SSSHHHHHHHHHHHCGG
T ss_pred EEEEECCC-----CCCHHHHHHHHHhhCCc
Confidence 45666665 89999999999999875
No 192
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.51 E-value=0.016 Score=62.69 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=42.6
Q ss_pred cChHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCH----------HHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 172 LSGGERKRLSFATELL--TDPALLLCDEPTTGLDS----------FSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~--~~P~lLlLDEPTsgLD~----------~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
+|..+- .+.++.+. .+|+++++|..+.-.++ ....++.+.|+.++++.|.+||+++|-
T Consensus 293 ~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 293 LTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL 362 (444)
T ss_dssp CBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred CCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 676664 34556665 48999999998764432 123578888999998889999999984
No 193
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.00059 Score=64.30 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=26.0
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
|+.++++|++ |||||||++.|++..++. ..|.|....
T Consensus 5 g~~i~i~Gps-----GsGKSTL~~~L~~~~~~~--~~~~i~~tt 41 (180)
T 1kgd_A 5 RKTLVLLGAH-----GVGRRHIKNTLITKHPDR--FAYPIPHTT 41 (180)
T ss_dssp CCEEEEECCT-----TSSHHHHHHHHHHHCTTT--EECCCCEEC
T ss_pred CCEEEEECCC-----CCCHHHHHHHHHhhCCcc--EEEeeeccC
Confidence 4455666554 899999999999987642 456665433
No 194
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.48 E-value=0.00011 Score=68.62 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=26.4
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
+++.++++|++ ||||||+.+.|++++ |.+.+++.++.
T Consensus 7 ~g~~i~l~G~~-----GsGKSTl~~~l~~~~-------g~~~i~~d~~~ 43 (175)
T 1knq_A 7 DHHIYVLMGVS-----GSGKSAVASEVAHQL-------HAAFLDGDFLH 43 (175)
T ss_dssp TSEEEEEECST-----TSCHHHHHHHHHHHH-------TCEEEEGGGGC
T ss_pred CCcEEEEEcCC-----CCCHHHHHHHHHHhh-------CcEEEeCcccc
Confidence 34455555554 899999999999853 66777776553
No 195
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.31 E-value=0.00088 Score=74.08 Aligned_cols=155 Identities=12% Similarity=-0.009 Sum_probs=82.0
Q ss_pred eEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC----------------------C-CCC---------
Q psy2519 35 YAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ----------------------V-IDD--------- 82 (622)
Q Consensus 35 l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~----------------------~-~~~--------- 82 (622)
++++++.+ ..+..+++|+| ||||||||++|..+ . ..+
T Consensus 51 ~~~~~l~f------~~g~n~i~G~N-----GaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r 119 (517)
T 4ad8_A 51 ITQLELEL------GGGFCAFTGET-----GAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASR 119 (517)
T ss_dssp BSCEEEEC------CCSEEEEEESH-----HHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEE
T ss_pred eeeEEEec------CCCeEEEEcCC-----CCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEE
Confidence 44556555 34577777777 79999999999554 1 100
Q ss_pred ---CceeeEEEECCEecCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-C
Q psy2519 83 ---CIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-L 153 (622)
Q Consensus 83 ---~~~~G~I~~~G~~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-L 153 (622)
....+++.+||++++. .....+.+++|++.+.......+ ..|--..................++++++. +
T Consensus 120 ~~~~~g~~~~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l~~~~~r-r~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~l 198 (517)
T 4ad8_A 120 RLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQ-RGLLDRRVTKEAQAYAAAHAAWREAVSRLERL 198 (517)
T ss_dssp EEETTSCCEEESSSSBCCHHHHHHHHTTTEEEESGGGGGTTTSHHHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCcEEEECCEECCHHHHHHHhhhheEEeCCchHHhcCCHHHH-HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHH
Confidence 0124678889988764 13566889999877655433333 333211110000000111111222222221 1
Q ss_pred CcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEE
Q psy2519 154 MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225 (622)
Q Consensus 154 ~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tv 225 (622)
.......... ++-.++|...|+.+ .|.+....++.+.++++.+ .+..+
T Consensus 199 ~~~~~~~~~~--------l~~l~~ql~ei~~~---------------~l~~~E~e~L~~~~~~L~~-~~~~~ 246 (517)
T 4ad8_A 199 QASQRERARQ--------IDLLAFQVQEISEV---------------SPDPGEEEGLNTELSRLSN-LHESS 246 (517)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHHHHH---------------CCCSSCHHHHHHHHHHHHH-HC---
T ss_pred HHhHHHHHHH--------HHHHHHHHHHHHhc---------------CCCCCcHHHHHHHHHHHHH-HHHHH
Confidence 1111111112 77888888888886 3455567788888888876 34443
No 196
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.24 E-value=0.0055 Score=65.99 Aligned_cols=50 Identities=8% Similarity=0.092 Sum_probs=32.4
Q ss_pred HHHHHHhhCCCeEEEeCCC-CC--CCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 181 SFATELLTDPALLLCDEPT-TG--LDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPT-sg--LD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
+++.+...+++++|+|+|- .+ .|+....++.++.+.+.. ....+++..|.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p-d~vlLVlDa~~ 223 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP-DDVILVIDASI 223 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC-SEEEEEEEGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC-cceEEEEeCcc
Confidence 4455555689999999886 34 788777777776666543 34445555543
No 197
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.19 E-value=0.025 Score=58.32 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=41.2
Q ss_pred HHHHHHHHHHh---hCCCeEEEeCCCCCCCH--------H----HHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 177 RKRLSFATELL---TDPALLLCDEPTTGLDS--------F----SASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 177 rqRvsIA~aL~---~~P~lLlLDEPTsgLD~--------~----~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
.+.+..++.++ .+|+++++|+.++-.+. . ...+++..|++++++.|.+||++.|.
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 35677778887 57999999999875432 1 23566777788887779999999885
No 198
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.07 E-value=0.0014 Score=64.31 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=27.7
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+|..+++.|++ |||||||+++|+|+ .|+|.+.|+|.
T Consensus 19 ~g~~i~i~G~~-----GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 19 QPFTVLIEGNI-----GSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CCEEEEEECST-----TSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CceEEEEECCC-----CCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 44455566555 89999999999997 37888888765
No 199
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.98 E-value=0.0072 Score=56.22 Aligned_cols=69 Identities=10% Similarity=0.028 Sum_probs=33.9
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce---EEecChHH
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT---AFIGSKDA 259 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i---v~~G~~~~ 259 (622)
.+++++++ .+-.|......+.+..++++++.|..++.+++.....+.++++.+.-.-.++. .+.+..++
T Consensus 111 ~~~piilv---~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~ 182 (188)
T 2wjg_A 111 MGANLLLA---LNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKKTAEIKYPNFEP 182 (188)
T ss_dssp TTCCEEEE---EECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC------------
T ss_pred cCCCEEEE---EEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhccCccCCCHHHHH
Confidence 44455554 24455544433333455565545777777776544467777777765555544 44444443
No 200
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.0024 Score=66.56 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=24.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCCEEEEEeccC
Q psy2519 190 PALLLCDEPTTGLDSFSASKLIRMMRELT--SQRKKTVLCTIHQP 232 (622)
Q Consensus 190 P~lLlLDEPTsgLD~~~~~~i~~~l~~l~--~~~g~tvi~~tH~~ 232 (622)
|.+|++||+....|......+..+++.+. ...+.++|+++|++
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 88999999977553211222333333331 22467899999985
No 201
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.84 E-value=0.013 Score=60.09 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=33.7
Q ss_pred hCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 188 TDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 188 ~~P~lLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
.+|++|++||+-. .-|......+...+..+.+ .|..+|++++.+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~ 141 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRH 141 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 5699999999865 3345778889999988876 577777777754
No 202
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.80 E-value=0.0071 Score=65.29 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=35.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC------CCC---ceeeEEEECCEecCc----cccccEEEEecCCCCCCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI------DDC---IIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLT 118 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~------~~~---~~~G~I~~~G~~~~~----~~r~~igyV~Q~~~l~~~lT 118 (622)
+++++|++ |||||||+|.|+|... |+. ..+|++.++|+++.- ..++..++.+|....+..++
T Consensus 182 kvaivG~~-----gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 182 KVAIVGRP-----NVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp EEEEECST-----TSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred eEEEECCC-----CCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 45666665 8999999999999853 110 146899999986521 23444444445433344434
Q ss_pred HHHHH
Q psy2519 119 VYEHL 123 (622)
Q Consensus 119 V~E~l 123 (622)
+.+++
T Consensus 257 ~~~~i 261 (439)
T 1mky_A 257 VVDSI 261 (439)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 203
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.79 E-value=0.0032 Score=60.64 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=21.7
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+|+.++++|++ |||||||++.|++..++
T Consensus 7 ~g~~i~l~Gps-----GsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPS-----GVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCT-----TSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcC-----CCCHHHHHHHHHhhCCC
Confidence 44455555554 89999999999999875
No 204
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.76 E-value=0.0039 Score=59.45 Aligned_cols=38 Identities=5% Similarity=-0.091 Sum_probs=20.2
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
..+++++|+++ .+++.++++|++ ||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~-----~~~~~i~l~G~~-----GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQS-----NAMVRIFLTGYM-----GAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------------CCCEEEEECCT-----TSCHHHHHHHHHHHH
T ss_pred CCCCCceeEec-----CCCCEEEEEcCC-----CCCHHHHHHHHHHHc
Confidence 46789999988 455566666554 899999999999765
No 205
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.72 E-value=0.055 Score=52.81 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=29.8
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEEecc
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ-RKKTVLCTIHQ 231 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~-~g~tvi~~tH~ 231 (622)
.+|+++++..+.+.++......+..+++.+... ...++|+.+|.
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 368999999998888886665555555443321 12588888983
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.64 E-value=0.01 Score=60.56 Aligned_cols=48 Identities=15% Similarity=0.347 Sum_probs=28.9
Q ss_pred HHhhCCCeEEEeCCCC-------------CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 185 ELLTDPALLLCDEPTT-------------GLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 185 aL~~~P~lLlLDEPTs-------------gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+.-..|.++++||--+ +.......++++.+..+....+..||.+|+.+
T Consensus 104 a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 104 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp HHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred HHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 3345689999999532 22223344455555444333467888899876
No 207
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.60 E-value=0.001 Score=68.87 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=21.7
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~ 204 (622)
+|.+..+|+..+...+..|+++|+|.|....|.
T Consensus 179 yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 179 YSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 455555554333345578999999999876653
No 208
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.38 E-value=0.00094 Score=64.82 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=38.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE--------CCEecCc-----cccccEEEEecCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV--------NGKPVEG-----KFRSACGFMYQHD 111 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~--------~G~~~~~-----~~r~~igyV~Q~~ 111 (622)
.+.+.|++ ||||||+.++|++.+.-....+|++.. +|.++.. .+++.+|+++|++
T Consensus 7 ~i~i~G~~-----GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 7 VITIDGPS-----GAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred EEEEECCC-----CCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 45556554 899999999999865211125788877 6776643 3567789998864
No 209
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.36 E-value=0.13 Score=53.89 Aligned_cols=75 Identities=11% Similarity=0.013 Sum_probs=45.5
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCCCHH-------------HHHHHHHHHHH---HHhcCCCEEEEEeccCcH------
Q psy2519 179 RLSFATELL--TDPALLLCDEPTTGLDSF-------------SASKLIRMMRE---LTSQRKKTVLCTIHQPSS------ 234 (622)
Q Consensus 179 RvsIA~aL~--~~P~lLlLDEPTsgLD~~-------------~~~~i~~~l~~---l~~~~g~tvi~~tH~~~~------ 234 (622)
-..+++.++ .+|+++++|+++.-.... ..+.+.+.+++ ++++.|.+||++.|-...
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg 208 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 208 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 345666664 679999999999866311 11234444444 456679999998885321
Q ss_pred ---------HHHhhccceeeecCCceEE
Q psy2519 235 ---------ELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 235 ---------~i~~~~D~v~~L~~G~iv~ 253 (622)
.+...+|-++.+...+...
T Consensus 209 ~~~~~~gG~~l~~~advrl~l~r~~~~k 236 (356)
T 1u94_A 209 NPETTTGGNALKFYASVRLDIRRIGAVK 236 (356)
T ss_dssp ----CTTCSHHHHHCSEEEEEEEEEEEE
T ss_pred CCcccCCCcceeeeccEEEEEEEeeeec
Confidence 3455677777776555433
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.34 E-value=0.017 Score=67.25 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=20.6
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+++.+++.|+ ||+|||||+++|++....
T Consensus 237 ~~~~vLL~Gp-----~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 237 PPRGILLYGP-----PGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCEEEECSC-----TTSSHHHHHHHHHHTTTC
T ss_pred CCCeEEEECc-----CCCCHHHHHHHHHHHcCC
Confidence 3444555555 489999999999998754
No 211
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.31 E-value=0.0026 Score=60.89 Aligned_cols=39 Identities=8% Similarity=-0.177 Sum_probs=28.0
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++..+.+.|++ |||||||++.|++.+++ ..|+|.+.+.+
T Consensus 21 ~~~~i~i~G~~-----GsGKstl~~~l~~~~~~---~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLS-----RSGKTTLANQLSQTLRE---QGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECT-----TSSHHHHHHHHHHHHHH---TTCCEEEEEGG
T ss_pred CCeEEEEECCC-----CCCHHHHHHHHHHHHhh---cCCeEEEeccC
Confidence 34445555554 89999999999998865 25777776554
No 212
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.18 E-value=0.0014 Score=61.40 Aligned_cols=29 Identities=7% Similarity=0.138 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHhCCCCCCCceee--EEEECCEec
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDG--DIRVNGKPV 96 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G--~I~~~G~~~ 96 (622)
+||||||+.+.|++.+.+ .| .|.++|..+
T Consensus 14 ~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 14 SGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp TTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 489999999999997754 34 566666544
No 213
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.16 E-value=0.0014 Score=69.05 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=38.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..+.++|++..+ ++..++++.++++ +++|.+ |+|||||++.|.|.... ..|.+..++.+
T Consensus 16 ~~v~~~~l~~~~--~~k~~~~~~~~~I-----------~vvG~~-----g~GKSTLln~L~~~~~~---~~~~~~~~~~~ 74 (361)
T 2qag_A 16 GYVGFANLPNQV--HRKSVKKGFEFTL-----------MVVGES-----GLGKSTLINSLFLTDLY---PERVIPGAAEK 74 (361)
T ss_dssp -----CCHHHHH--HTHHHHHCCEECE-----------EECCCT-----TSCHHHHHHHHTTCCC---------------
T ss_pred ceEEeccchHHh--CCeeecCCCCEEE-----------EEEcCC-----CCCHHHHHHHHhCCCCC---CCCcccCCCcc
Confidence 457788888875 5556666766544 556555 89999999999887554 24444444433
Q ss_pred cCccc-cccEEEEecCCCCCCCCCHHHHHHH
Q psy2519 96 VEGKF-RSACGFMYQHDLFSPSLTVYEHLYF 125 (622)
Q Consensus 96 ~~~~~-r~~igyV~Q~~~l~~~lTV~E~l~f 125 (622)
..+.. .....+..|.+.....+++.++.-+
T Consensus 75 ~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 75 IERTVQIEASTVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp ---CEEEEEEEEC----CEEEEEEEEC----
T ss_pred cCCceeEEEEEEEeecCCcccceEEEEeccc
Confidence 32211 1123444444333334555555444
No 214
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.02 E-value=0.022 Score=54.32 Aligned_cols=26 Identities=15% Similarity=-0.040 Sum_probs=19.4
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++..+.+.|++ ||||||+.+.|++..
T Consensus 20 ~~~~i~i~G~~-----GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVT-----NSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEEST-----TSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCC-----CCCHHHHHHHHHHhc
Confidence 34445555554 899999999999875
No 215
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.00 E-value=0.0074 Score=63.69 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=42.0
Q ss_pred cCCcccCCccccccccceeeeE--------------eeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYA--------------IVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~--------------~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++.++++||++.|+. +...++ |+.+.+ .+|++..|+|++ |+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~-er~~Le~~~~~~~~tGiraID~~~pi-----~rGQr~~IvG~s-----G~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHAN-SRLRMERGNGSTEDLTARVLDLASPI-----GRGQRGLIVAPP-----KAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCC-SBCCCCCTTCCTTHHHHHHHHHHSCC-----BTTCEEEEECCS-----SSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCC-CccccccCCCCcccccceeeeeeeee-----cCCcEEEEecCC-----CCChhHHHHHHHHHH
Confidence 467889999999854 455677 666666 577777887765 899999999999865
No 216
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.96 E-value=0.029 Score=51.78 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=20.3
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++.+++++|.+ |+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~-----g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRP-----NAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEEST-----TSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCC-----CCCHHHHHHHHhCCC
Confidence 34566777665 799999999999875
No 217
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.96 E-value=0.022 Score=55.73 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHHhhCCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEec
Q psy2519 183 ATELLTDPALLLCDEPTTG-LDSFSASKLIRMMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 183 A~aL~~~P~lLlLDEPTsg-LD~~~~~~i~~~l~~l~~~~g~tvi~~tH 230 (622)
..+|..+|+++++|||-.- .+.......++.+..+-. .|..++.++|
T Consensus 78 ~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~N 125 (228)
T 2r8r_A 78 DALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVN 125 (228)
T ss_dssp HHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcc
Confidence 3335578999999997642 332222333333344444 6889999998
No 218
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.96 E-value=0.001 Score=69.59 Aligned_cols=63 Identities=13% Similarity=-0.010 Sum_probs=41.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++.+++.+.| +...+++++++.. +++..+.++|++ |||||||++.|++...+ ..|+|.+-+.+
T Consensus 31 ie~~~~~~~~--~~~~~~~~l~~~~-----~~~~~i~i~G~~-----g~GKSTl~~~l~~~~~~---~~~~v~v~~~d 93 (341)
T 2p67_A 31 VESRHPRHQA--LSTQLLDAIMPYC-----GNTLRLGVTGTP-----GAGKSTFLEAFGMLLIR---EGLKVAVIAVD 93 (341)
T ss_dssp HHCCCHHHHH--HHHHHHHHHGGGC-----SCSEEEEEEECT-----TSCHHHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred hhcCCchhhh--HHHHHHHhCCccc-----CCCEEEEEEcCC-----CCCHHHHHHHHHHHHHh---cCCeEEEEeec
Confidence 4556666654 4455666666544 455566666665 89999999999998765 24556554443
No 219
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.89 E-value=0.054 Score=58.48 Aligned_cols=58 Identities=10% Similarity=-0.008 Sum_probs=38.4
Q ss_pred cChHHHHHHHHHHHHh--hCCC--eEEEeCCCCCC------C-HHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 172 LSGGERKRLSFATELL--TDPA--LLLCDEPTTGL------D-SFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~--~~P~--lLlLDEPTsgL------D-~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
+|-.+-+ +.++.+. .+|+ ++++|--+.-- + .....++.+.|+.++++.|.+||+++|-
T Consensus 291 ~s~~~i~--~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 359 (444)
T 3bgw_A 291 QSVNYIW--SKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 359 (444)
T ss_dssp CBHHHHH--HHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CCHHHHH--HHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 5554432 2344444 4799 99999654211 1 2234567788899999889999999994
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.80 E-value=0.0023 Score=71.24 Aligned_cols=52 Identities=8% Similarity=-0.102 Sum_probs=35.2
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++..++.++++++ +++.+++.|+| |+|||||+++|++...+ ..|+|.+.|..
T Consensus 94 ~~~~~l~~~~~~~------~g~~vll~Gp~-----GtGKTtlar~ia~~l~~---~~~~i~~~~~~ 145 (543)
T 3m6a_A 94 LEYLAVQKLTKSL------KGPILCLAGPP-----GVGKTSLAKSIAKSLGR---KFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHHHSSSC------CSCEEEEESSS-----SSSHHHHHHHHHHHHTC---EEEEECCCC--
T ss_pred HHHHHHHHhcccC------CCCEEEEECCC-----CCCHHHHHHHHHHhcCC---CeEEEEecccc
Confidence 3344455555544 45556666554 89999999999999876 47888777643
No 221
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.76 E-value=0.013 Score=54.09 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=20.1
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
..++++|++ |||||||+++|++++.+
T Consensus 5 ~~i~l~G~~-----GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPM-----GAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCT-----TSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCC-----CCCHHHHHHHHHHHhCC
Confidence 455666665 89999999999997643
No 222
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.73 E-value=0.0088 Score=57.43 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=20.2
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++.++++|+ ||||||||++.|.+..+
T Consensus 18 ~g~~ivl~GP-----SGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGA-----SGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECC-----TTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECc-----CCCCHHHHHHHHHhhCC
Confidence 3445555555 48999999999998765
No 223
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.60 E-value=0.0054 Score=58.33 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=27.5
Q ss_pred hCCCeEEEeCCCC-CCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHh
Q psy2519 188 TDPALLLCDEPTT-GLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELID 238 (622)
Q Consensus 188 ~~P~lLlLDEPTs-gLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~ 238 (622)
.++++|++||+-. .++.....+++ .++..... .+..+|++|+.+..++..
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~-~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMF-ENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHH-TTCCEEEEESSCHHHHHH
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHh-CCCCEEEEcCCCHHHHHH
Confidence 4678999999932 23333344344 45555434 456677776654445443
No 224
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.51 E-value=0.026 Score=54.40 Aligned_cols=44 Identities=7% Similarity=0.175 Sum_probs=30.1
Q ss_pred hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCCE-EEEEeccC
Q psy2519 188 TDPALLLCDEPTTGL-DSFSASKLIRMMRELTSQRKKT-VLCTIHQP 232 (622)
Q Consensus 188 ~~P~lLlLDEPTsgL-D~~~~~~i~~~l~~l~~~~g~t-vi~~tH~~ 232 (622)
.+|.++++||.-.-- +......+.+.+.+... .+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAE-QKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHH-HCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHH-cCCCeEEEEcCCC
Confidence 458999999965422 23337778888888876 4554 77777753
No 225
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.51 E-value=0.016 Score=62.38 Aligned_cols=28 Identities=14% Similarity=-0.025 Sum_probs=23.6
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+++.++++|+| ||||||||++|+++..+
T Consensus 25 ~~~~~~i~G~n-----G~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 25 ESNFTSIIGPN-----GSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TCSEEEEECST-----TSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCC-----CCCHHHHHHHHHhhhcc
Confidence 45677777777 89999999999998876
No 226
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.46 E-value=0.07 Score=53.33 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=30.5
Q ss_pred HhhCCCeEEEeCCCCC----------CCHHHHHHHHHHHHHHH---hcCCCEEEEEeccC
Q psy2519 186 LLTDPALLLCDEPTTG----------LDSFSASKLIRMMRELT---SQRKKTVLCTIHQP 232 (622)
Q Consensus 186 L~~~P~lLlLDEPTsg----------LD~~~~~~i~~~l~~l~---~~~g~tvi~~tH~~ 232 (622)
...+|.+|++||--.- -|......+.+++..+. ...+..+|.+|+.+
T Consensus 107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 107 KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 3456889999997331 25556677777777763 21245677788764
No 227
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.31 E-value=0.007 Score=63.38 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=28.0
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+..+.++|++ |||||||+|.|+|...+ ..|+|.+.+.++
T Consensus 74 ~~~v~lvG~p-----gaGKSTLln~L~~~~~~---~~~~v~V~~~dp 112 (349)
T 2www_A 74 AFRVGLSGPP-----GAGKSTFIEYFGKMLTE---RGHKLSVLAVDP 112 (349)
T ss_dssp CEEEEEECCT-----TSSHHHHHHHHHHHHHH---TTCCEEEEECCC
T ss_pred ceEEEEEcCC-----CCCHHHHHHHHHHHhhh---cCCeEEEEeecC
Confidence 3455566665 89999999999998766 257776655544
No 228
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.27 E-value=0.042 Score=51.50 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=25.8
Q ss_pred eeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC----CC-CceeeEEEECCE
Q psy2519 34 VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI----DD-CIIDGDIRVNGK 94 (622)
Q Consensus 34 ~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~----~~-~~~~G~I~~~G~ 94 (622)
+++++++.. +..+++++|.+ |+|||||++.+.+... |+ ....+++.++|.
T Consensus 13 ~l~~~~~~~------~~~ki~~vG~~-----~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 13 VLASLGLWN------KHGKLLFLGLD-----NAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp -----------------CEEEEEEST-----TSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHhhccC------CccEEEEECCC-----CCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 456666554 34467777765 7999999999997432 11 113566666653
No 229
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.10 E-value=0.0089 Score=58.56 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=38.8
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEEE-eccCcHHHHhhccc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDK 242 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~~-tH~~~~~i~~~~D~ 242 (622)
.+.|.-.+.. ...+.+.+++++||.-. ++|.......++.+.+... .-.+++++ |.+ .+...+++++
T Consensus 161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~-~~~~~~~~~~ 229 (235)
T 3llm_A 161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATID-TSMFCEYFFN 229 (235)
T ss_dssp EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSC-CHHHHHHTTS
T ss_pred ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCC-HHHHHHHcCC
Confidence 3455555543 33578899999999976 6877666555554444432 22355554 444 3445555543
No 230
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.85 E-value=0.18 Score=51.58 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=45.0
Q ss_pred HHHHHHHHh---hCCCeEEEeCCCCCCC--------HH----HHHHHHHHHHHHHhcCCCEEEEEeccCc----------
Q psy2519 179 RLSFATELL---TDPALLLCDEPTTGLD--------SF----SASKLIRMMRELTSQRKKTVLCTIHQPS---------- 233 (622)
Q Consensus 179 RvsIA~aL~---~~P~lLlLDEPTsgLD--------~~----~~~~i~~~l~~l~~~~g~tvi~~tH~~~---------- 233 (622)
-+..++.++ .+|+++++|.-+.-.. .. ...+++..|++++++.|.+||++.|-..
T Consensus 191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~ 270 (322)
T 2i1q_A 191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAE 270 (322)
T ss_dssp HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CC
T ss_pred HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCc
Confidence 344455566 3589999999875321 11 2356677778888878999999877421
Q ss_pred -----HHHHhhccceeeecC
Q psy2519 234 -----SELIDMFDKIILLAD 248 (622)
Q Consensus 234 -----~~i~~~~D~v~~L~~ 248 (622)
..+.+.+|.++.|+.
T Consensus 271 ~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 271 QAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp EESSHHHHHHHCSEEEEEEE
T ss_pred CCCCcHHHHhcCcEEEEEEe
Confidence 124556677777753
No 231
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.77 E-value=0.7 Score=50.40 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=47.3
Q ss_pred HHHHHHHHHh--hCCCeEEEeCCCCCC-------CH-HHHHHHHHHHHHHHhcCCCEEEEEeccCc--------------
Q psy2519 178 KRLSFATELL--TDPALLLCDEPTTGL-------DS-FSASKLIRMMRELTSQRKKTVLCTIHQPS-------------- 233 (622)
Q Consensus 178 qRvsIA~aL~--~~P~lLlLDEPTsgL-------D~-~~~~~i~~~l~~l~~~~g~tvi~~tH~~~-------------- 233 (622)
+-++.++.++ .+|+++++|=-+. + +. ....++.+.|++++++.|.+||+++|-..
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~ 419 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS 419 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence 3444555554 4699999995433 2 21 33456888889999888999999998532
Q ss_pred -------HHHHhhccceeeec
Q psy2519 234 -------SELIDMFDKIILLA 247 (622)
Q Consensus 234 -------~~i~~~~D~v~~L~ 247 (622)
..+.+.+|-|+.|.
T Consensus 420 l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 420 ITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp SSSCSSSSHHHHHCSEEEEEE
T ss_pred hhhhccchHhhecCcEEEEEE
Confidence 13566788888885
No 232
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.59 E-value=0.042 Score=58.97 Aligned_cols=40 Identities=0% Similarity=-0.204 Sum_probs=29.8
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++.+.++|++ ||||||++..|++.+.+. .|+|.+.+.|..
T Consensus 98 ~~vi~i~G~~-----GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~~ 137 (425)
T 2ffh_A 98 RNLWFLVGLQ-----GSGKTTTAAKLALYYKGK---GRRPLLVAADTQ 137 (425)
T ss_dssp SEEEEEECCT-----TSSHHHHHHHHHHHHHTT---TCCEEEEECCSS
T ss_pred CeEEEEECCC-----CCCHHHHHHHHHHHHHHc---CCeEEEeecccc
Confidence 4445555543 899999999999998873 678888776653
No 233
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.49 E-value=0.02 Score=54.29 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=24.2
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++++++.. +..+++++|.+ |+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~------~~~ki~lvG~~-----~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYK------KTGKLVFLGLD-----NAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTT------CCEEEEEEEET-----TSSHHHHHHHHSCC
T ss_pred HHHHHhhccC------CCcEEEEECCC-----CCCHHHHHHHHhcC
Confidence 4455555432 33466777775 79999999999874
No 234
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.41 E-value=0.037 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.1
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHh
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFL 76 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~ 76 (622)
++..+|+|+| ||||||+|++|.
T Consensus 23 ~g~~~I~G~N-----GsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQN-----GSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCT-----TSSHHHHHHHHH
T ss_pred CCeEEEECCC-----CCCHHHHHHHHH
Confidence 4567777777 799999999986
No 235
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.25 E-value=0.37 Score=50.18 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||+|||||.+.|+...
T Consensus 126 pGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 126 PGTGKTLIGKCIASQS 141 (357)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc
Confidence 5899999999998754
No 236
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.86 E-value=0.07 Score=51.83 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=43.0
Q ss_pred hhCCCeEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH---------HHHhhccceeeec
Q psy2519 187 LTDPALLLCDEPTT----GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS---------ELIDMFDKIILLA 247 (622)
Q Consensus 187 ~~~P~lLlLDEPTs----gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~---------~i~~~~D~v~~L~ 247 (622)
-.+|+++++|--+. .-|.....++...|++++++.|.+++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35789999986432 2255667788889999998889999999986321 1234678777774
No 237
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.84 E-value=0.26 Score=48.21 Aligned_cols=16 Identities=13% Similarity=0.218 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||+|||||.+.++...
T Consensus 48 ~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 48 PGCGKTLLAKAVATEA 63 (262)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4899999999998754
No 238
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=92.68 E-value=0.088 Score=55.85 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=28.1
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCC-----------CCCCCceeeEEEECCE
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQ-----------VIDDCIIDGDIRVNGK 94 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~-----------~~~~~~~~G~I~~~G~ 94 (622)
..+.++.++|.| |+|||||+|.|+|. ..| ..|.+.+.|.
T Consensus 20 ~~~~kvgIVG~p-----nvGKSTL~n~Ltg~~~~~~~~p~tTi~p---~~g~v~v~~~ 69 (396)
T 2ohf_A 20 GTSLKIGIVGLP-----NVGKSTFFNVLTNSQASAENFPFCTIDP---NESRVPVPDE 69 (396)
T ss_dssp SSCCCEEEECCS-----SSSHHHHHHHHHC-------------CC---SEEEEECCCH
T ss_pred cCCCEEEEECCC-----CCCHHHHHHHHHCCCccccCCCccccCc---eeEEEEECCc
Confidence 345567777776 79999999999998 333 3688887764
No 239
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.64 E-value=1.2 Score=45.63 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=14.2
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||+|||||.+.++...
T Consensus 54 pGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 54 PGTGKSYLAKAVATEA 69 (322)
T ss_dssp SSSCHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHc
Confidence 5899999999999765
No 240
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.23 E-value=1.2 Score=46.68 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=43.9
Q ss_pred HHHHHHHHHh--hCCCeEEEeCCCCCC-----CH--------HHHHHHHHHHHHH---HhcCCCEEEEEeccCcHH----
Q psy2519 178 KRLSFATELL--TDPALLLCDEPTTGL-----DS--------FSASKLIRMMREL---TSQRKKTVLCTIHQPSSE---- 235 (622)
Q Consensus 178 qRvsIA~aL~--~~P~lLlLDEPTsgL-----D~--------~~~~~i~~~l~~l---~~~~g~tvi~~tH~~~~~---- 235 (622)
+-+.+++.++ .+++++++|..+.=. |. ...+++.+.+++| +++.+.+||++.|-. ..
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~-~~~~~~ 217 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR-EKIGVM 217 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc-cccCcc
Confidence 3445666666 469999999998643 11 1223445555555 676789998888752 21
Q ss_pred ------------HHhhccceeeecCCc
Q psy2519 236 ------------LIDMFDKIILLADSR 250 (622)
Q Consensus 236 ------------i~~~~D~v~~L~~G~ 250 (622)
+...+|-++.|..++
T Consensus 218 fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 218 YGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp --------CHHHHHHHCSEEEEEEEES
T ss_pred cCCccccCCcchhhheeeEEEEEEecc
Confidence 345567777776554
No 241
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.11 E-value=0.13 Score=53.28 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=23.6
Q ss_pred CCCeEEEeCCCCCCCHH-HHHHHHHHHHHHHh---cCCCEEEEEeccC
Q psy2519 189 DPALLLCDEPTTGLDSF-SASKLIRMMRELTS---QRKKTVLCTIHQP 232 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~-~~~~i~~~l~~l~~---~~g~tvi~~tH~~ 232 (622)
+|.+|++||.-.-.+.. ....+.++++.... ..+..+|++++++
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 36799999985432211 23333344433321 2456889999875
No 242
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.84 E-value=0.078 Score=48.25 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=19.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.++|...
T Consensus 5 ~v~lvG~~-----gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNP-----NVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECST-----TSSHHHHHHHHHCCSS
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCCe
Confidence 45666665 8999999999998654
No 243
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.79 E-value=1.2 Score=55.47 Aligned_cols=73 Identities=11% Similarity=0.068 Sum_probs=47.7
Q ss_pred HHHHHHHHHh--hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHH---HHhcCCCEEEEEeccC-------
Q psy2519 178 KRLSFATELL--TDPALLLCDEPTTGLD-S------------FSASKLIRMMRE---LTSQRKKTVLCTIHQP------- 232 (622)
Q Consensus 178 qRvsIA~aL~--~~P~lLlLDEPTsgLD-~------------~~~~~i~~~l~~---l~~~~g~tvi~~tH~~------- 232 (622)
+-...++.++ .+|+++++|+.+.-.. + ...+++.+.+++ ++++.|.+||++.|..
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~ 876 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 876 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 3444555444 5799999999987652 1 123445555555 4676899999998831
Q ss_pred --------cHHHHhhccceeeecCCc
Q psy2519 233 --------SSELIDMFDKIILLADSR 250 (622)
Q Consensus 233 --------~~~i~~~~D~v~~L~~G~ 250 (622)
+..+.+.+|-++.+.+++
T Consensus 877 Gdp~~p~gs~~Leq~ADvvl~L~R~~ 902 (1706)
T 3cmw_A 877 GNPETTTGGNALKFYASVRLDIRRIG 902 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred CCccccCCcchhhheeeEEEEEEecc
Confidence 124677788888886443
No 244
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.77 E-value=0.063 Score=50.30 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
||||||||++.|.+.+.+....-|.|..++++
T Consensus 15 sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 15 SGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred CCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 58999999999998764321235777776644
No 245
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.70 E-value=0.037 Score=53.03 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHhCCCCCCCceee--EEEECCEe
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDG--DIRVNGKP 95 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G--~I~~~G~~ 95 (622)
+||||||+.+.|++.+.| ..| .+.++|..
T Consensus 34 ~GsGKsT~~~~l~~~l~~---~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 34 SASGKSTLAVELEHQLVR---DRRVHAYRLDGDN 64 (211)
T ss_dssp TTSSHHHHHHHHHHHHHH---HHCCCEEEECHHH
T ss_pred CCCCHHHHHHHHHHHhcc---ccCCcEEEECChH
Confidence 489999999999998864 256 77777544
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.23 E-value=0.91 Score=46.62 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHH--h--hCCCeEEEeCCCCCC-----CH----------HHHHHHHHHHHH---HHhcCCCEEEEEeccC
Q psy2519 175 GERKRLSFATEL--L--TDPALLLCDEPTTGL-----DS----------FSASKLIRMMRE---LTSQRKKTVLCTIHQP 232 (622)
Q Consensus 175 GqrqRvsIA~aL--~--~~P~lLlLDEPTsgL-----D~----------~~~~~i~~~l~~---l~~~~g~tvi~~tH~~ 232 (622)
+|++.+.++.+| + .+|++++.|=-++=. +. ..++.+-+.|++ ++++.|.++|++-|-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 455556666665 3 369999999766542 11 123344455544 5677899999999973
No 247
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.22 E-value=0.062 Score=52.54 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=21.6
Q ss_pred eEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 35 YAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 35 l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
|.++|+.+ ...+++..+++.|+ |||||||+++.|+..+.+
T Consensus 13 ~~~~~~~~--~~~~~g~~i~i~G~-----~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYF--QSNAMSAFITFEGP-----EGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------C--CCCCCCEEEEEECC-----TTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeE--eecCCCeEEEEEcC-----CCCCHHHHHHHHHHHHhc
Confidence 45555544 11123444444444 489999999999988764
No 248
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.09 E-value=0.1 Score=49.89 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=18.1
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLS 77 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g 77 (622)
.+..+|.|+| ||||||++++|.-
T Consensus 23 ~~~~~I~G~N-----gsGKStil~ai~~ 45 (203)
T 3qks_A 23 EGINLIIGQN-----GSGKSSLLDAILV 45 (203)
T ss_dssp SEEEEEECCT-----TSSHHHHHHHHHH
T ss_pred CCeEEEEcCC-----CCCHHHHHHHHHH
Confidence 4566777777 7999999998853
No 249
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.08 E-value=0.31 Score=53.01 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=50.8
Q ss_pred ccccChHHHHHHHHHH--HHhh---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 169 KVVLSGGERKRLSFAT--ELLT---------------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~--aL~~---------------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
-+++||||+|-.-+|+ +++. .-.++++||. +-+|...+...+++++++ |.-+|+++=+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP~ 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAPE 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEESS
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECcc
Confidence 4569999999744443 3333 1247999999 999999999999999965 6667777644
Q ss_pred CcHHHHhhccceeeec
Q psy2519 232 PSSELIDMFDKIILLA 247 (622)
Q Consensus 232 ~~~~i~~~~D~v~~L~ 247 (622)
.+....|.++.+-
T Consensus 452 ---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 ---NISPERGTTYKLV 464 (483)
T ss_dssp ---SCCCSSSEEEECC
T ss_pred ---hhhhccCceEEEE
Confidence 3445567776663
No 250
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.92 E-value=0.1 Score=48.36 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.++|..
T Consensus 4 kv~ivG~~-----gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNT-----GSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCT-----TSSHHHHHHHHTCC-
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 34566554 899999999999864
No 251
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.65 E-value=0.11 Score=49.20 Aligned_cols=20 Identities=10% Similarity=0.002 Sum_probs=16.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLS 77 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g 77 (622)
+.+.|++ ||||||+.+.|++
T Consensus 4 i~i~G~~-----GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNI-----GCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECT-----TSSHHHHHHHHHH
T ss_pred EEEECCC-----CcCHHHHHHHHHH
Confidence 4556665 8999999999998
No 252
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.51 E-value=0.15 Score=48.44 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=20.6
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.++..+++.|+ ||||||||.+.|+...+
T Consensus 10 ~~~~~i~l~G~-----sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGP-----SGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECC-----TTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECC-----CCCCHHHHHHHHHHhCc
Confidence 34555555555 48999999999987653
No 253
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.07 E-value=0.19 Score=47.88 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=52.9
Q ss_pred HHHHHHHHHh--hCCCeEEEeCCCC--CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 178 KRLSFATELL--TDPALLLCDEPTT--GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 178 qRvsIA~aL~--~~P~lLlLDEPTs--gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
+.+.-++..+ .+.++++|||.+. .++-....+++++|.+- -.+..||+|..++.+++.+++|-|--|..-
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R--p~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC--cCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 3455566666 5679999999976 34444556788888753 247899999999999999999999999754
No 254
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.00 E-value=0.17 Score=52.90 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=22.7
Q ss_pred cChHHHHHHHHHHHH---hh--CCCeEEEeCCC
Q psy2519 172 LSGGERKRLSFATEL---LT--DPALLLCDEPT 199 (622)
Q Consensus 172 LSgGqrqRvsIA~aL---~~--~P~lLlLDEPT 199 (622)
+|+||+||..++++| .. +++++++|||+
T Consensus 297 ~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 297 SLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 899999999999999 76 89999999997
No 255
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.76 E-value=0.18 Score=46.31 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=15.0
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
|||||||+.+.|+..+.
T Consensus 12 ~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 12 SSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp TTSSHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 69999999999998664
No 256
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.48 E-value=1.9 Score=53.62 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=46.5
Q ss_pred HHHHHHh--hCCCeEEEeCCCCCCCH-------------HHHHHHHHHHHHH---HhcCCCEEEEEeccCc---------
Q psy2519 181 SFATELL--TDPALLLCDEPTTGLDS-------------FSASKLIRMMREL---TSQRKKTVLCTIHQPS--------- 233 (622)
Q Consensus 181 sIA~aL~--~~P~lLlLDEPTsgLD~-------------~~~~~i~~~l~~l---~~~~g~tvi~~tH~~~--------- 233 (622)
.+++.++ .+|+++++|..++=... ...+++.+.++++ +++.|.+||++.|...
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~ 530 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 530 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence 4555554 57999999999876641 1223444555555 5667999999988521
Q ss_pred ------HHHHhhccceeeecCCc
Q psy2519 234 ------SELIDMFDKIILLADSR 250 (622)
Q Consensus 234 ------~~i~~~~D~v~~L~~G~ 250 (622)
..+...+|-++.+...+
T Consensus 531 ~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 531 ETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp EEESSCSHHHHHEEEEEEEEEEE
T ss_pred ccCCCCcceeeeCCEEEEEEecc
Confidence 24667889888876543
No 257
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.40 E-value=1.2 Score=56.17 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=48.9
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HhcCCCEEEEEeccCcH------
Q psy2519 179 RLSFATELL--TDPALLLCDEPTTGLD-S------------FSASKLIRMMREL---TSQRKKTVLCTIHQPSS------ 234 (622)
Q Consensus 179 RvsIA~aL~--~~P~lLlLDEPTsgLD-~------------~~~~~i~~~l~~l---~~~~g~tvi~~tH~~~~------ 234 (622)
-+.+++.++ .+|+++++|.-++-.. + ...+++.+.+++| +++.|.+||++.|-...
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 455666665 4799999999876552 1 1234455666666 57789999999884211
Q ss_pred ---------HHHhhccceeeecCCce
Q psy2519 235 ---------ELIDMFDKIILLADSRT 251 (622)
Q Consensus 235 ---------~i~~~~D~v~~L~~G~i 251 (622)
.+...+|-++.|...+.
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEeccc
Confidence 36677899988875543
No 258
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.38 E-value=0.19 Score=47.48 Aligned_cols=16 Identities=6% Similarity=-0.095 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|++.+
T Consensus 27 ~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 27 SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4899999999999754
No 259
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.97 E-value=0.33 Score=44.99 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=15.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 22 ki~ivG~~-----~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNL-----SSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCT-----TSCHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 44555543 899999997666543
No 260
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.97 E-value=0.68 Score=47.62 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=24.2
Q ss_pred eEEEeCCCCCCC-----------HHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 192 LLLCDEPTTGLD-----------SFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 192 lLlLDEPTsgLD-----------~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
++++||-.+=-. .....+++..|..++++.|.|+|++++.
T Consensus 185 LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 185 VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 888888665211 1223344444555555578999998874
No 261
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=88.84 E-value=0.27 Score=51.56 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=18.8
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHh
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFL 76 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~ 76 (622)
.++-.+|.|+| ||||||+|.+|.
T Consensus 24 ~~gl~vi~G~N-----GaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGEN-----GSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECT-----TSSHHHHHHHHH
T ss_pred CCCeEEEECCC-----CCCHHHHHHHHH
Confidence 34677777777 899999999986
No 262
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.50 E-value=0.23 Score=49.52 Aligned_cols=49 Identities=16% Similarity=0.128 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 198 PTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||+++.....++.+.+.+..++.+.+.....|.. +++.+.++++.-.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~-~~~e~~~~~l~~~~ 192 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD-EDIEREIKHISELL 192 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-HHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-HHHHHHHHHHHHHH
Confidence 89999999999999999998875555556677774 67877777765443
No 263
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.47 E-value=0.22 Score=44.65 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=17.0
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |+|||||++.+.|...
T Consensus 5 i~~vG~~-----~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAP-----GVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEST-----TSSHHHHHHHHCCC--
T ss_pred EEEECCC-----CCCHHHHHHHHcCccc
Confidence 4556654 8999999999998654
No 264
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.36 E-value=0.22 Score=46.30 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=15.8
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
+||||||+.+.|+..+.+
T Consensus 22 ~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 22 PGSGKTTIATRLADLLQK 39 (186)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 489999999999988764
No 265
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.17 E-value=0.17 Score=49.89 Aligned_cols=28 Identities=7% Similarity=0.152 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
|||||||+.+.|+..+.. |.+.++|..+
T Consensus 41 ~GsGKSTla~~L~~~l~~-----~~~~~~~D~~ 68 (253)
T 2p5t_B 41 SGAGKTTIHRIKQKEFQG-----NIVIIDGDSF 68 (253)
T ss_dssp GGGTTHHHHHHHHHHTTT-----CCEEECGGGG
T ss_pred CCCCHHHHHHHHHHhcCC-----CcEEEecHHH
Confidence 489999999999987642 4566776544
No 266
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.90 E-value=0.23 Score=46.35 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=17.4
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+..+++.|+ |||||||+.+.|+..
T Consensus 10 ~~~I~l~G~-----~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGT-----PGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECS-----TTSSHHHHHHHHHHH
T ss_pred CCEEEEECC-----CCCCHHHHHHHHHHh
Confidence 334445444 489999999999865
No 267
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.78 E-value=0.34 Score=44.63 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=18.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 25 ~i~v~G~~-----~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRS-----NVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBT-----TSSHHHHHHHHHTSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCc
Confidence 45666654 899999999999875
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.73 E-value=0.26 Score=44.75 Aligned_cols=16 Identities=6% Similarity=-0.130 Sum_probs=14.0
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+..+
T Consensus 10 ~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 10 DCCFKSTVAAKLSKEL 25 (173)
T ss_dssp SSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5999999999998654
No 269
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=87.71 E-value=0.42 Score=52.15 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=27.4
Q ss_pred HhhCCCeEEEeCCC----------CCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 186 LLTDPALLLCDEPT----------TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 186 L~~~P~lLlLDEPT----------sgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
--..|.+||+||-- ..++.....++++.+..+....+..||.+|+.+
T Consensus 294 ~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred HhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 34568899999961 222233444455555544333355677788875
No 270
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.61 E-value=0.25 Score=43.90 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=17.0
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 6 i~v~G~~-----~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAG-----GVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEST-----TSSHHHHHHHHHHSS
T ss_pred EEEECCC-----CCCHHHHHHHHHhCc
Confidence 4555554 899999999998764
No 271
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.61 E-value=0.27 Score=44.10 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=16.8
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 6 i~v~G~~-----~~GKssli~~l~~~~ 27 (172)
T 2erx_A 6 VAVFGAG-----GVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEECCT-----TSSHHHHHHHHHTCC
T ss_pred EEEECCC-----CCCHHHHHHHHHcCC
Confidence 4455554 899999999999854
No 272
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.51 E-value=0.28 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.|..
T Consensus 6 ki~i~G~~-----~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDP-----GVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHCC-
T ss_pred EEEEECCC-----CccHHHHHHHHhcCC
Confidence 44556554 899999999999865
No 273
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.40 E-value=0.37 Score=44.57 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.|.+..
T Consensus 25 ~i~v~G~~-----~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRS-----NVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBT-----TSSHHHHHHHHHTC-
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 45556554 899999999999864
No 274
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.38 E-value=0.33 Score=43.99 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=17.9
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
-+++++|.+ |+|||||++.+.+..
T Consensus 9 ~~i~v~G~~-----~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 9 PVVTIMGHV-----DHGKTTLLDAIRHSK 32 (178)
T ss_dssp CEEEEESCT-----TTTHHHHHHHHHTTC
T ss_pred CEEEEECCC-----CCCHHHHHHHHhCCc
Confidence 345555554 899999999998754
No 275
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.19 E-value=0.27 Score=45.48 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=12.9
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+..
T Consensus 13 ~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 13 PGAGKGTQASRLAQE 27 (186)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999999853
No 276
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.15 E-value=0.26 Score=44.15 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=13.8
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+|+|||||++.+.+..
T Consensus 14 ~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 14 GAVGKSSMIQRYCKGI 29 (168)
T ss_dssp TTSSHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 3899999999998754
No 277
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=87.12 E-value=0.76 Score=45.05 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=18.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.++++|.+ |||||||++.|.|..
T Consensus 24 ~I~lvG~~-----g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKT-----GTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECT-----TSCHHHHHHHHHTSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 45666654 899999999999865
No 278
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.10 E-value=0.3 Score=43.86 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=16.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |+|||||++.+.+...
T Consensus 5 i~ivG~~-----~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 5 VMLVGES-----GVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEECST-----TSSHHHHHHHHHCC--
T ss_pred EEEECCC-----CCCHHHHHHHHHhccC
Confidence 4555554 8999999999987543
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.96 E-value=0.34 Score=43.74 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=11.3
Q ss_pred CCCChHHHHHHH
Q psy2519 64 PNVDFSELIRLF 75 (622)
Q Consensus 64 sGaGKSTLl~~l 75 (622)
|||||||+.+.|
T Consensus 10 ~GsGKsT~a~~L 21 (179)
T 3lw7_A 10 PGSGKSEFAKLL 21 (179)
T ss_dssp TTSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 599999999999
No 280
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.95 E-value=0.3 Score=44.35 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 11 ~i~v~G~~-----~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDS-----GVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCT-----TSCHHHHHHHHCSCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 34555554 899999999999864
No 281
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=86.86 E-value=0.27 Score=50.16 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=20.9
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+.|.++++|.+ |||||||+|.|.|..
T Consensus 9 ~~g~v~ivG~~-----nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKP-----NVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECST-----TSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCC-----CCcHHHHHHHHhCCC
Confidence 45677777665 799999999999864
No 282
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.85 E-value=0.31 Score=45.10 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=18.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 50 ~i~vvG~~-----g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQ-----NSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCCC
Confidence 45555554 8999999999998653
No 283
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.80 E-value=0.34 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=17.5
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 4 i~v~G~~-----~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRS-----NVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBT-----TSSHHHHHHHHHSCC
T ss_pred EEEECCC-----CCCHHHHHHHHhCcC
Confidence 4556654 899999999999864
No 284
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=86.80 E-value=0.39 Score=48.10 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.|+|..
T Consensus 5 kI~lvG~~-----nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNP-----NSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHCCC
T ss_pred EEEEECCC-----CCCHHHHHHHHHCCC
Confidence 34555554 799999999999964
No 285
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.68 E-value=0.28 Score=43.70 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 6 ~i~v~G~~-----~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSG-----GVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCc
Confidence 34555554 899999999998754
No 286
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.61 E-value=0.29 Score=43.54 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=17.2
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 4 i~v~G~~-----~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRP-----NVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHCC
T ss_pred EEEECCC-----CCCHHHHHHHHhCCC
Confidence 4555554 899999999999865
No 287
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.49 E-value=0.36 Score=45.16 Aligned_cols=15 Identities=20% Similarity=-0.011 Sum_probs=13.4
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
+||||||+.+.|+..
T Consensus 17 ~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 17 IGSGKSTVAALLRSW 31 (203)
T ss_dssp TTSCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHC
Confidence 489999999999965
No 288
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.34 E-value=0.32 Score=44.12 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 11 ~i~v~G~~-----~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGG-----GVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCc
Confidence 44555554 899999999998864
No 289
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.31 E-value=0.3 Score=43.43 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=16.7
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 6 i~v~G~~-----~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSG-----GVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEECCC-----CCCHHHHHHHHHcCC
Confidence 4555554 899999999998654
No 290
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=86.30 E-value=0.36 Score=47.82 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |||||||+|.|+|..
T Consensus 3 kI~lvG~~-----n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNP-----NCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHTTS
T ss_pred EEEEECCC-----CCCHHHHHHHHHCCC
Confidence 34555554 799999999999974
No 291
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.28 E-value=0.34 Score=47.08 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=18.9
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++..+.+.|++ ||||||+.+.|++.+
T Consensus 15 ~~~~i~i~G~~-----gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPA-----SSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSS-----CSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCC-----CCCHHHHHHHHHHHc
Confidence 34455555554 899999999999743
No 292
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.28 E-value=0.32 Score=43.55 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=17.7
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |+|||||++.+.+...
T Consensus 6 i~v~G~~-----~~GKssli~~l~~~~~ 28 (170)
T 1g16_A 6 ILLIGDS-----GVGKSCLLVRFVEDKF 28 (170)
T ss_dssp EEEEEST-----TSSHHHHHHHHHHCCC
T ss_pred EEEECcC-----CCCHHHHHHHHHhCCC
Confidence 4556654 8999999999997653
No 293
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.22 E-value=0.38 Score=44.32 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=18.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 18 ki~ivG~~-----~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLD-----NAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEEST-----TSSHHHHHHHHCCSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 45666654 899999999999763
No 294
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.20 E-value=0.35 Score=45.20 Aligned_cols=16 Identities=6% Similarity=-0.049 Sum_probs=14.1
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+||||||+.+.|+..+
T Consensus 9 ~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 9 VGAGKSTISAEISKKL 24 (205)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHhc
Confidence 5899999999999754
No 295
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.20 E-value=0.31 Score=43.69 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 8 ~i~v~G~~-----~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDT-----GVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999999875
No 296
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.07 E-value=0.32 Score=43.46 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=16.8
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 6 i~v~G~~-----~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSG-----GVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECST-----TSSHHHHHHHHHHCC
T ss_pred EEEECCC-----CCCHHHHHHHHHcCC
Confidence 4555554 899999999998754
No 297
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=86.05 E-value=0.45 Score=49.84 Aligned_cols=37 Identities=22% Similarity=0.057 Sum_probs=24.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC-----C--C-CceeeEEEECC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI-----D--D-CIIDGDIRVNG 93 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~-----~--~-~~~~G~I~~~G 93 (622)
+++++|.+ |+|||||+|.|+|... | + ....|.+.++|
T Consensus 4 kI~IVG~p-----nvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 4 KCGIVGLP-----NVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred EEEEECCC-----CCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45666665 7999999999998431 1 0 01357777766
No 298
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.90 E-value=0.35 Score=44.59 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=19.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+++++|.+ |+|||||++.+.|...+
T Consensus 16 ki~vvG~~-----~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPG-----LSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHTSCG
T ss_pred EEEEECCC-----CCCHHHHHHHHHhhccc
Confidence 34555554 89999999999987654
No 299
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=85.89 E-value=0.33 Score=43.55 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 8 ~i~v~G~~-----~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEG-----CVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCT-----TSCHHHHHHHHHHCC
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999999764
No 300
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=85.87 E-value=0.33 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=19.3
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+.++++|.+ |+|||||+|.|.|..
T Consensus 8 g~V~ivG~~-----nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKP-----NVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECST-----TSSHHHHHHHHHTSC
T ss_pred CEEEEECCC-----CCCHHHHHHHHhCCc
Confidence 456677665 799999999999864
No 301
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=85.86 E-value=0.35 Score=47.52 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHh---hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC--CCEEEEEecc
Q psy2519 176 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR--KKTVLCTIHQ 231 (622)
Q Consensus 176 qrqRvsIA~aL~---~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~--g~tvi~~tH~ 231 (622)
++.+-.+.+++. .+|+++++--+.+.++. ....+++.++++..+. +.++|+++|-
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK 148 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRK 148 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEch
Confidence 444444555542 67777766555555544 4455666776654211 5789999986
No 302
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.81 E-value=0.33 Score=43.39 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=17.0
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.. |+|||||++.+.+..
T Consensus 6 i~v~G~~-----~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEA-----AVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEECCC-----CCCHHHHHHHHhcCC
Confidence 4555554 899999999998765
No 303
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=85.75 E-value=0.4 Score=43.45 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 8 ki~v~G~~-----~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDG-----ASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHGGG
T ss_pred EEEEECcC-----CCCHHHHHHHHHhCc
Confidence 34555554 899999999999754
No 304
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=85.72 E-value=0.34 Score=43.93 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 9 ~i~v~G~~-----~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDG-----GVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998754
No 305
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.70 E-value=0.46 Score=47.96 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=18.4
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
|||||||+.+.|+.... .|.+.+++
T Consensus 42 sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 42 PGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp TTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 69999999999986543 24455654
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.42 E-value=0.46 Score=43.98 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=13.1
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+..
T Consensus 14 ~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 14 PATGKTTLSQALATG 28 (193)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999854
No 307
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.34 E-value=0.36 Score=43.14 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 8 ~i~v~G~~-----~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGES-----AVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998743
No 308
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.28 E-value=0.42 Score=44.26 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 10 ki~vvG~~-----~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAG-----GVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCcHHHHHHHHHcCC
Confidence 45555554 899999999998743
No 309
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.26 E-value=0.37 Score=43.97 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=16.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLS 77 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g 77 (622)
+++++|.+ |+|||||++.+.+
T Consensus 20 ~i~v~G~~-----~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLD-----GAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEET-----TSSHHHHHHHTCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhc
Confidence 45666665 7999999999974
No 310
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=85.24 E-value=0.53 Score=44.38 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=13.7
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+||||||+.+.|+-.+
T Consensus 19 ~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 19 DRSGKSTQSKLLVEYL 34 (212)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4899999999998643
No 311
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=85.23 E-value=0.37 Score=43.75 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 10 ~i~v~G~~-----~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDS-----GVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCc
Confidence 34555554 899999999998765
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.19 E-value=0.45 Score=43.93 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.8
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+-.+
T Consensus 12 ~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 12 PGVGSTTSSQLAMDNL 27 (192)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5999999999998644
No 313
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.03 E-value=0.38 Score=44.04 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=17.1
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.|.+..
T Consensus 7 i~v~G~~-----~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGAD-----GVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHSS
T ss_pred EEEECCC-----CCCHHHHHHHHHhCC
Confidence 4555554 899999999999765
No 314
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.94 E-value=0.5 Score=43.51 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=13.0
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+-.
T Consensus 20 ~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 20 PGVGKTTLGKELASK 34 (180)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999843
No 315
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=84.93 E-value=0.41 Score=43.27 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 16 ~i~v~G~~-----~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQ-----SVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34556554 899999999998654
No 316
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.82 E-value=0.51 Score=44.17 Aligned_cols=16 Identities=0% Similarity=-0.056 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+||||||+.+.|+..+
T Consensus 13 ~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 13 DKSGKTTQCMNIMESI 28 (204)
T ss_dssp TTSSHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4899999999999776
No 317
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=84.81 E-value=0.39 Score=44.03 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 13 ki~v~G~~-----~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDS-----GVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 34555554 899999999999754
No 318
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.72 E-value=0.4 Score=44.22 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+|+|||||++.|.+..
T Consensus 30 ~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 30 GGVGKSALTIQLIQNH 45 (190)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHcCC
Confidence 3899999999998764
No 319
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=84.70 E-value=0.4 Score=43.33 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 17 ~i~v~G~~-----~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDM-----GVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999999765
No 320
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=84.68 E-value=0.39 Score=44.48 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 27 ki~v~G~~-----~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 27 KVVLIGES-----GVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEEESST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCCC
Confidence 34555554 8999999999998543
No 321
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=84.68 E-value=0.46 Score=43.81 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.|.+..
T Consensus 9 ki~v~G~~-----~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGES-----SVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCc
Confidence 34555554 899999999999864
No 322
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=84.65 E-value=0.57 Score=43.65 Aligned_cols=25 Identities=4% Similarity=0.121 Sum_probs=19.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+++++|.+ |+|||||++.+.|...+
T Consensus 22 ki~~vG~~-----~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLR-----RSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHSCCCG
T ss_pred EEEEECCC-----CCCHHHHHHHHHhcCCC
Confidence 55666554 89999999999986543
No 323
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=84.50 E-value=0.48 Score=47.37 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |||||||+|.|+|..
T Consensus 5 ~I~lvG~~-----n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNP-----NSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHTTC
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 34555554 799999999999864
No 324
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.34 E-value=0.51 Score=43.57 Aligned_cols=16 Identities=0% Similarity=-0.176 Sum_probs=13.6
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+-+.|+..+
T Consensus 14 ~GsGKst~a~~La~~l 29 (185)
T 3trf_A 14 MGAGKTSVGSQLAKLT 29 (185)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5899999999998543
No 325
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=84.23 E-value=0.46 Score=43.47 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=18.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 12 ki~v~G~~-----~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 12 KFLVIGNA-----GTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCCC
Confidence 44556554 8999999999987653
No 326
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.20 E-value=0.48 Score=42.54 Aligned_cols=23 Identities=9% Similarity=0.054 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 9 ~i~v~G~~-----~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLD-----GAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 44555554 899999999997644
No 327
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.18 E-value=0.44 Score=43.28 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 12 ~i~v~G~~-----~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDS-----GVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECcC-----CCCHHHHHHHHHhCCC
Confidence 34555554 8999999999987553
No 328
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=84.16 E-value=0.44 Score=43.44 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 20 ki~v~G~~-----~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSG-----GVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhhCC
Confidence 34555554 899999999999754
No 329
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.10 E-value=0.6 Score=42.98 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 18 ~i~v~G~~-----~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 18 KVIIVGLD-----NAGKTTILYQFSMNE 40 (187)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHTTS
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 45566654 799999999999643
No 330
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=84.08 E-value=0.51 Score=47.66 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=19.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.++++|.+ |||||||++.|.|...
T Consensus 26 ~I~vvG~~-----~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQ-----SSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECS-----SSSHHHHHHHHHTSCC
T ss_pred eEEEEcCC-----CCCHHHHHHHHHCCCc
Confidence 46666665 7999999999999753
No 331
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=84.05 E-value=0.45 Score=42.45 Aligned_cols=22 Identities=0% Similarity=-0.073 Sum_probs=16.4
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 3 i~~~G~~-----~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLD-----AAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECST-----TSSHHHHHHHHHHHC
T ss_pred EEEECCC-----CCCHHHHHHHHHcCC
Confidence 3455554 899999999997643
No 332
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=84.03 E-value=0.45 Score=43.21 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 14 ki~v~G~~-----~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 14 KLVLLGDV-----GAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEECCT-----TSCHHHHHHHHHHCCC
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCCC
Confidence 34555554 8999999999987643
No 333
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=83.96 E-value=0.49 Score=47.11 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=17.3
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |+|||||+|.|.|...
T Consensus 11 I~vvG~~-----g~GKSTLin~L~~~~~ 33 (274)
T 3t5d_A 11 LMVVGES-----GLGKSTLINSLFLTDL 33 (274)
T ss_dssp EEEEECT-----TSSHHHHHHHHSSSCC
T ss_pred EEEECCC-----CCCHHHHHHHHhCCCc
Confidence 3455554 8999999999987643
No 334
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=83.88 E-value=0.54 Score=43.09 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=16.8
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++.|+ |||||||+.+.|+..+
T Consensus 7 i~i~G~-----~GsGKsTla~~La~~l 28 (175)
T 1via_A 7 IVFIGF-----MGSGKSTLARALAKDL 28 (175)
T ss_dssp EEEECC-----TTSCHHHHHHHHHHHH
T ss_pred EEEEcC-----CCCCHHHHHHHHHHHc
Confidence 455555 4899999999998654
No 335
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.83 E-value=0.14 Score=52.89 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=26.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+++++++||.- .|.......+.+.+.+.. .+..+|+++..+
T Consensus 110 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~--~~~~~il~~n~~ 150 (340)
T 1sxj_C 110 GFKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYA 150 (340)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCG
T ss_pred CceEEEEeCCC-CCCHHHHHHHHHHHhcCC--CCeEEEEEecCc
Confidence 47899999974 455566667777776653 244566666554
No 336
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=83.82 E-value=0.41 Score=44.82 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=16.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+++++|.+ |+|||||++.+.|.
T Consensus 25 ki~vvG~~-----~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGES-----GVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECST-----TSSHHHHHHHTCCE
T ss_pred EEEEECCC-----CCCHHHHHHHHHhc
Confidence 44555554 89999999999864
No 337
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=83.82 E-value=0.48 Score=44.33 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=18.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 26 ki~vvG~~-----~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 26 KVVILGYR-----CVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECCC-----CcCHHHHHHHHHhCCC
Confidence 45556554 8999999999998653
No 338
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=83.80 E-value=0.55 Score=43.03 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=18.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 23 ~i~v~G~~-----~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLD-----NAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEET-----TSSHHHHHHHHHTTS
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 45566664 799999999999754
No 339
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=83.68 E-value=0.54 Score=43.88 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 10 ki~v~G~~-----~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNS-----SVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECST-----TSSHHHHHHHHHTCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 34555554 899999999999865
No 340
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.66 E-value=0.5 Score=43.77 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=18.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 25 ki~v~G~~-----~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 25 KLLIIGNS-----SVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHHTT
T ss_pred EEEEECCC-----CcCHHHHHHHHhcCCC
Confidence 45566654 7999999999998653
No 341
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=83.65 E-value=0.58 Score=43.17 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.3
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
|||||||+.+.|+-.+.
T Consensus 10 ~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 10 PGVGKSTVLAKVKEILD 26 (194)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 58999999999987543
No 342
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=83.63 E-value=0.56 Score=46.91 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=19.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.|.|...
T Consensus 28 ~i~vvG~~-----~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQ-----SAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBT-----TSCHHHHHHHHHTSCC
T ss_pred eEEEEeCC-----CCCHHHHHHHHHCCCc
Confidence 56667665 7999999999999753
No 343
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=83.63 E-value=0.5 Score=43.86 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=17.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 25 ki~vvG~~-----~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDT-----GVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHHCC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCC
Confidence 45556554 899999999998765
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.62 E-value=0.57 Score=44.76 Aligned_cols=16 Identities=6% Similarity=0.025 Sum_probs=13.5
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+..+
T Consensus 13 ~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 13 PGAGKGTQAPNLQERF 28 (220)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc
Confidence 4899999999998643
No 345
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=83.61 E-value=0.46 Score=43.89 Aligned_cols=23 Identities=13% Similarity=0.067 Sum_probs=18.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 23 ki~v~G~~-----~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLD-----NSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECT-----TSSHHHHHHHTSCGG
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 45556554 899999999999865
No 346
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=83.56 E-value=0.52 Score=46.66 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.0
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+|+|||||++.|+|..
T Consensus 14 ~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 14 PNVGKTSLFNALTGTK 29 (258)
T ss_dssp TTSSHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHCCC
Confidence 4899999999999854
No 347
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=83.54 E-value=0.58 Score=43.81 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=16.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 27 ki~v~G~~-----~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSA-----GTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHC--
T ss_pred EEEEECcC-----CCCHHHHHHHHHhCC
Confidence 45556554 899999999998754
No 348
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=83.54 E-value=0.51 Score=43.40 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 9 ki~v~G~~-----~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDS-----QCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 44556554 899999999998764
No 349
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=83.52 E-value=0.64 Score=43.82 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=13.7
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+||||||+.+.|+-.+
T Consensus 18 ~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 18 DRAGKSTQSRKLVEAL 33 (215)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4899999999998654
No 350
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.51 E-value=0.18 Score=51.37 Aligned_cols=39 Identities=5% Similarity=-0.110 Sum_probs=27.6
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+..+.++|++ |+||||++..|++...+ ..|+|.+.+.+.
T Consensus 98 ~~vi~i~G~~-----G~GKTT~~~~la~~~~~---~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQ-----GTGKTTTAGKLAYFYKK---KGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSS-----CSSTTHHHHHHHHHHHH---TTCCEEEEECCC
T ss_pred CeEEEEECCC-----CCCHHHHHHHHHHHHHH---CCCeEEEEecCC
Confidence 4445555443 89999999999998875 256777765554
No 351
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=83.43 E-value=0.5 Score=43.71 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=17.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.. |+|||||++.+.+...
T Consensus 19 ki~v~G~~-----~~GKSsl~~~l~~~~~ 42 (199)
T 4bas_A 19 QVVMCGLD-----NSGKTTIINQVKPAQS 42 (199)
T ss_dssp EEEEECCT-----TSCHHHHHHHHSCCC-
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCCC
Confidence 45556554 8999999999998643
No 352
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.43 E-value=0.54 Score=46.06 Aligned_cols=24 Identities=4% Similarity=-0.014 Sum_probs=18.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.+++.|++ |+|||||.++|++...
T Consensus 47 ~vll~G~~-----GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPP-----GTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCT-----TSCHHHHHHHHHHHHT
T ss_pred eEEEECcC-----CCCHHHHHHHHHHHcC
Confidence 35555554 8999999999998654
No 353
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=83.43 E-value=0.48 Score=44.24 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 10 ki~v~G~~-----~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDS-----GVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998865
No 354
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=83.39 E-value=0.55 Score=44.08 Aligned_cols=18 Identities=11% Similarity=-0.119 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
|||||||+.+.|+..+..
T Consensus 13 ~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 13 DGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp TTSSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 589999999999976543
No 355
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=83.36 E-value=0.53 Score=43.73 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=16.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 28 ki~vvG~~-----~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSR-----GVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECST-----TSSHHHHHHHHCC--
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 34555554 899999999998754
No 356
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=83.34 E-value=0.58 Score=42.91 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 20 ~i~v~G~~-----~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLD-----NAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECST-----TSSHHHHHHHHTTCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 44555554 899999999999765
No 357
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=83.32 E-value=0.49 Score=43.66 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.. |+|||||++.+.+...
T Consensus 18 ki~v~G~~-----~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 18 KLLLIGDS-----GVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCCC
Confidence 34555554 8999999999998653
No 358
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.25 E-value=0.68 Score=42.94 Aligned_cols=22 Identities=5% Similarity=0.006 Sum_probs=16.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
.+++.|+ |||||||+.+.|+..
T Consensus 11 ~I~l~G~-----~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 11 IIFVVGG-----PGSGKGTQCEKIVQK 32 (196)
T ss_dssp EEEEEEC-----TTSSHHHHHHHHHHH
T ss_pred EEEEECC-----CCCCHHHHHHHHHHH
Confidence 4455555 489999999999854
No 359
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.23 E-value=0.5 Score=43.60 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 24 ki~vvG~~-----~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNS-----SVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998765
No 360
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.23 E-value=0.37 Score=50.74 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=36.0
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 189 DPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD---~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
.|.++++||--.=++ +.....+.+.+++.++ .|..++++||.|.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHH
Confidence 578999999877774 6677778888888776 7999999999974
No 361
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=83.20 E-value=0.37 Score=45.72 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=18.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.|.|..
T Consensus 31 ~i~v~G~~-----~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRS-----NAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESC-----HHHHHHHHHHHTTCS
T ss_pred EEEEEcCC-----CCCHHHHHHHHhCCC
Confidence 45555554 899999999999875
No 362
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.13 E-value=0.57 Score=44.29 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=18.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|++ |+|||||++.|.+...
T Consensus 14 ~i~~~G~~-----g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 14 SIIIAGPQ-----NSGKTSLLTLLTTDSV 37 (218)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCCC
Confidence 44555554 8999999999998653
No 363
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=83.12 E-value=0.5 Score=43.99 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 16 ki~v~G~~-----~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSG-----GVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 34555554 899999999998754
No 364
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=83.08 E-value=0.51 Score=43.07 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 20 ki~v~G~~-----~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDG-----GVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 34555554 899999999999764
No 365
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=82.90 E-value=0.56 Score=42.72 Aligned_cols=23 Identities=30% Similarity=0.192 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 8 ki~~~G~~-----~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 8 KIAILGYR-----SVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSS
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCC
Confidence 45666664 799999999998543
No 366
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=82.89 E-value=0.6 Score=42.56 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=12.9
Q ss_pred CCCChHHHHHHHhC
Q psy2519 64 PNVDFSELIRLFLS 77 (622)
Q Consensus 64 sGaGKSTLl~~l~g 77 (622)
|||||||+.+.|+.
T Consensus 11 ~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 11 PGSGKSTWAREFIA 24 (181)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 59999999999986
No 367
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=82.83 E-value=0.53 Score=43.96 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+++++|.+ |+|||||++.+.|.
T Consensus 8 kv~lvG~~-----~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQ-----GVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHH
T ss_pred EEEEECCC-----CCCHHHHHHHHhcC
Confidence 45566554 79999999999863
No 368
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=82.55 E-value=0.45 Score=44.22 Aligned_cols=18 Identities=6% Similarity=0.220 Sum_probs=15.2
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
||||||||++.|...++.
T Consensus 13 sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 13 KHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhHh
Confidence 599999999999987643
No 369
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=82.48 E-value=0.58 Score=43.80 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=18.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 10 ki~v~G~~-----~~GKSsli~~l~~~~~ 33 (206)
T 2bcg_Y 10 KLLLIGNS-----GVGKSCLLLRFSDDTY 33 (206)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHCCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCCC
Confidence 44556554 8999999999987543
No 370
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=82.42 E-value=0.56 Score=43.25 Aligned_cols=23 Identities=22% Similarity=0.194 Sum_probs=17.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 22 ki~v~G~~-----~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDS-----NVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998654
No 371
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=82.33 E-value=0.58 Score=44.12 Aligned_cols=24 Identities=8% Similarity=-0.040 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 9 ki~vvG~~-----~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 9 AVLFVGLC-----DSGKTLLFVRLLTGQY 32 (214)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCCc
Confidence 45555554 8999999999987543
No 372
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=82.29 E-value=0.68 Score=44.09 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=13.0
Q ss_pred CCCChHHHHHHHhC
Q psy2519 64 PNVDFSELIRLFLS 77 (622)
Q Consensus 64 sGaGKSTLl~~l~g 77 (622)
+||||||+.+.|+.
T Consensus 13 ~GSGKST~~~~L~~ 26 (218)
T 1vht_A 13 IGSGKSTVANAFAD 26 (218)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 58999999999987
No 373
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=82.26 E-value=0.57 Score=43.27 Aligned_cols=23 Identities=4% Similarity=0.008 Sum_probs=17.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 24 ki~v~G~~-----~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQ-----YSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998654
No 374
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=82.13 E-value=0.65 Score=43.87 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=17.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.. |+|||||++.+.+...
T Consensus 27 ki~vvG~~-----~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDS-----GVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCT-----TSSHHHHHHHHHCSCC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCCC
Confidence 34555554 8999999999998654
No 375
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=82.10 E-value=0.57 Score=43.35 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 23 ki~v~G~~-----~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDT-----GVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCC
Confidence 34555554 899999999999754
No 376
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=82.02 E-value=0.65 Score=44.51 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|. +|+|||||++.+.+..
T Consensus 31 kI~vvG~-----~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGA-----PNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECS-----TTSSHHHHHHHHTTTC
T ss_pred EEEEECC-----CCCCHHHHHHHHhCCC
Confidence 4455544 3899999999998753
No 377
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=81.99 E-value=0.6 Score=42.52 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=16.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 7 ~i~~~G~~-----~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDG-----AVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998643
No 378
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=81.93 E-value=0.39 Score=45.42 Aligned_cols=18 Identities=6% Similarity=-0.012 Sum_probs=15.3
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
|||||||+.+.|+..+..
T Consensus 9 ~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 9 DGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEHHHHHHHHHHHHHE
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 489999999999987653
No 379
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=81.83 E-value=0.61 Score=42.91 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 17 ~i~v~G~~-----~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGES-----GVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998764
No 380
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=81.81 E-value=0.61 Score=42.34 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 10 ki~v~G~~-----~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDG-----AVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 45555554 899999999998654
No 381
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.78 E-value=0.64 Score=43.73 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=18.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.. |+|||||++.+.+...
T Consensus 27 ki~vvG~~-----~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 27 KLVVVGDG-----ACGKTCLLIVFSKDEF 50 (207)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHHSSC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCCC
Confidence 45666654 7999999999998653
No 382
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.75 E-value=0.61 Score=43.33 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 30 ki~v~G~~-----~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRA-----GVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 44555554 899999999998754
No 383
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=81.69 E-value=0.75 Score=43.61 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=16.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 36 ki~vvG~~-----~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 36 KVVLVGDG-----GCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHC--
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCC
Confidence 45555554 899999999999754
No 384
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=81.60 E-value=0.62 Score=43.13 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=17.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 25 ki~~vG~~-----~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 25 KIVVVGDG-----AVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCCC
Confidence 44555554 8999999999998653
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=81.51 E-value=0.72 Score=42.81 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=14.2
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+||||||+.+.|+-.+
T Consensus 9 ~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 9 DGSGKSTQIQLLAQYL 24 (197)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5999999999998765
No 386
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.51 E-value=0.66 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 28 ki~lvG~~-----~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNA-----GVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSS
T ss_pred EEEEECcC-----CCCHHHHHHHHHhCC
Confidence 45566654 899999999887654
No 387
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=81.43 E-value=0.74 Score=42.82 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=16.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 22 ki~~~G~~-----~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDG-----AVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECST-----TSSHHHHHHHHHC--
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 44555554 899999999998754
No 388
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=81.37 E-value=0.62 Score=43.45 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 30 ki~v~G~~-----~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDA-----AVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESST-----TSSHHHHHHHHHHCC
T ss_pred EEEEECcC-----CCCHHHHHHHHHhCC
Confidence 44555544 899999999998764
No 389
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=81.35 E-value=0.67 Score=43.79 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=18.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 30 ki~vvG~~-----~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDS-----QCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCCC
Confidence 45666554 8999999999998643
No 390
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=81.30 E-value=0.71 Score=45.19 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 203 D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+|..+..+.+..+++++ .+..+|+.-.+.
T Consensus 110 ~~~vr~~l~~~qr~~a~-~~~~~V~~GRd~ 138 (233)
T 3r20_A 110 VPAVRTRLVDIQRKLAT-EGGRVVVEGRDI 138 (233)
T ss_dssp CHHHHHHHHHHHHHHHT-SSSCEEEEESSC
T ss_pred chHHHHHHHHHHHHHHH-hcCcEEEecccc
Confidence 45678889999999987 413466666654
No 391
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=81.11 E-value=0.93 Score=43.29 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=16.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
.+++.|+ |||||||+.+.|+-.
T Consensus 7 ~I~l~G~-----~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 7 KVMISGA-----PASGKGTQCELIKTK 28 (222)
T ss_dssp CEEEEES-----TTSSHHHHHHHHHHH
T ss_pred EEEEECC-----CCCCHHHHHHHHHHH
Confidence 4455555 489999999999854
No 392
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=81.08 E-value=0.85 Score=42.38 Aligned_cols=23 Identities=0% Similarity=-0.031 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 31 ki~v~G~~-----~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 31 RILMVGLD-----AAGKTTILYKLKLGE 53 (192)
T ss_dssp EEEEEEST-----TSSHHHHHHHHCSSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 45556554 899999999997643
No 393
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.06 E-value=0.66 Score=43.46 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 22 ~i~v~G~~-----~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDS-----GVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHCC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 44555554 899999999998754
No 394
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=80.98 E-value=0.54 Score=42.71 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 9 ki~~vG~~-----~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDA-----RSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCG-----GGCHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 45556554 799999999998754
No 395
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=80.83 E-value=0.67 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=17.5
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+.++|.+ |+|||||++.|++..
T Consensus 4 v~IVG~p-----nvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLP-----NVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCS-----SSSHHHHHHHHHHHH
T ss_pred EEEECCC-----CCCHHHHHHHHhCCC
Confidence 4566665 799999999999863
No 396
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=80.79 E-value=0.81 Score=45.18 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=18.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.. |+|||||++.|.|...
T Consensus 38 ~I~lvG~~-----g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 38 TVLVLGKG-----GVGKSSTVNSLIGEQV 61 (262)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHTSCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCCC
Confidence 34555554 8999999999998653
No 397
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=80.72 E-value=0.7 Score=42.73 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=17.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 23 ki~vvG~~-----~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRR-----GAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCcHHHHHHHHHhCC
Confidence 44555554 899999999988754
No 398
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=80.68 E-value=0.74 Score=43.05 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=18.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 27 ki~vvG~~-----~~GKSsli~~l~~~~~ 50 (201)
T 2gco_A 27 KLVIVGDG-----ACGKTCLLIVFSKDQF 50 (201)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCcC
Confidence 45566554 7999999999998543
No 399
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=80.60 E-value=0.88 Score=43.69 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=16.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.+++.|+ |||||||+.+.|+..+
T Consensus 9 ~I~l~G~-----~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGA-----PGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEEC-----TTSSHHHHHHHHHHHS
T ss_pred EEEEECC-----CCCCHHHHHHHHHHHc
Confidence 3445555 4899999999998543
No 400
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=80.56 E-value=0.81 Score=43.11 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=13.6
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||||||||++.|....
T Consensus 10 SG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 10 SGTGKSTLLKKLFAEY 25 (186)
T ss_dssp TTSSHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhC
Confidence 6999999999997554
No 401
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=80.43 E-value=0.83 Score=43.73 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.|..
T Consensus 39 kVvlvG~~-----~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQ-----GVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHCCC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 45666554 899999999999743
No 402
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=80.23 E-value=0.78 Score=43.47 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.++++|.+ |+|||||++.|++..
T Consensus 32 ~i~i~G~~-----g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAI-----GSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECT-----TSCHHHHHHHHHHHH
T ss_pred EEEEEcCC-----CCCHHHHHHHHHHHh
Confidence 44555543 899999999998754
No 403
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=80.21 E-value=0.83 Score=42.13 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=12.8
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+-.
T Consensus 12 ~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 12 PGAGKGTQCARIVEK 26 (196)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999743
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=80.18 E-value=0.93 Score=43.25 Aligned_cols=16 Identities=6% Similarity=0.073 Sum_probs=13.5
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+..+
T Consensus 14 ~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 14 PGSGKGTQCEFIKKEY 29 (217)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4899999999998643
No 405
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=80.09 E-value=0.88 Score=45.10 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.|.|..
T Consensus 41 ~I~vvG~~-----g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKG-----GVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHTSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 34455554 899999999999865
No 406
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=79.99 E-value=1.5 Score=44.79 Aligned_cols=36 Identities=14% Similarity=-0.036 Sum_probs=24.3
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
...+++.-+.+ .|..+++.|+ ||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~------~g~~vl~~G~-----sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV------YGVGVLITGD-----SGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE------TTEEEEEEES-----TTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE------CCEEEEEEeC-----CCCCHHHHHHHHHhc
Confidence 44566766666 3434444444 599999999999875
No 407
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=79.86 E-value=1.1 Score=42.09 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=13.2
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+..
T Consensus 29 ~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 29 PGAGKGTQAVKLAEK 43 (201)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999854
No 408
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=79.81 E-value=0.56 Score=42.82 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=5.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 10 ki~v~G~~-----~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDS-----GVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCC-----CC-------------
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 34555554 899999999998654
No 409
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.78 E-value=1.1 Score=40.76 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=24.7
Q ss_pred CCCeEEEeCCCCCCCH---HHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 189 DPALLLCDEPTTGLDS---FSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~---~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+|.++++||--.-.+. .....+.+.++.+.+..+..+|+++..+
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 161 (195)
T 1jbk_A 115 GNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLD 161 (195)
T ss_dssp TTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHH
T ss_pred CCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHH
Confidence 4679999996432211 1122345555555554456777777754
No 410
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=79.75 E-value=0.87 Score=43.16 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=12.9
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+..
T Consensus 9 ~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 9 PGAGKGTQAEQIIEK 23 (216)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999753
No 411
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=79.67 E-value=0.92 Score=41.85 Aligned_cols=16 Identities=0% Similarity=-0.051 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+||||||+.+.|+..+
T Consensus 9 ~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 9 DGSGKTTQAKKLYEYL 24 (195)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5899999999998654
No 412
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=79.17 E-value=0.69 Score=48.63 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=28.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCC-----CC---ceeeEEEECCEec
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVID-----DC---IIDGDIRVNGKPV 96 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~-----~~---~~~G~I~~~G~~~ 96 (622)
.+.++|.+ .+|||||+|.|+|-... .. ...|.+.++|.++
T Consensus 74 ~V~ivG~P-----NvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFP-----SVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCC-----CHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCC-----CCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 45677765 49999999999996431 11 2468888888754
No 413
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=79.15 E-value=1.1 Score=44.47 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=19.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
.++++|.+ |+|||||+|.|.|....
T Consensus 101 ~v~~vG~~-----~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 101 RVLIVGVP-----NTGKSTIINKLKGKRAS 125 (262)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHTTCC-
T ss_pred heEEeCCC-----CCCHHHHHHHHhccccc
Confidence 45556554 79999999999997653
No 414
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=79.03 E-value=0.9 Score=41.92 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 20 ki~v~G~~-----~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDG-----AVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 44556554 799999999998754
No 415
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=79.01 E-value=1.1 Score=41.60 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=13.1
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+..
T Consensus 21 ~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 21 PGSGKGTQCEKLVEK 35 (199)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999999854
No 416
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=78.96 E-value=0.9 Score=42.54 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 31 ki~vvG~~-----~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDA-----SVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECcC-----CCCHHHHHHHHhhCC
Confidence 35556554 799999999998754
No 417
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=78.80 E-value=0.49 Score=44.75 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 13 ki~vvG~~-----~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDG-----GVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCT-----TSSHHHHHCBCTTCS
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 44555554 899999999998654
No 418
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=78.74 E-value=0.97 Score=42.86 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=13.0
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+..
T Consensus 9 ~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 9 PGAGKGTQGERIVEK 23 (216)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999754
No 419
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=78.74 E-value=3.5 Score=39.90 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=42.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEec---------cCcHHHHhhccceeeec
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH---------QPSSELIDMFDKIILLA 247 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH---------~~~~~i~~~~D~v~~L~ 247 (622)
+|+++++||--. |+. ++++.++.+++ .|.+||++-| .++.++..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 553 46667788887 5999999999 66678888999999875
No 420
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=78.63 E-value=1 Score=40.87 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=13.6
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+..+
T Consensus 11 ~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 11 RGCGMTTVGRELARAL 26 (173)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5899999999998643
No 421
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=78.52 E-value=0.8 Score=41.98 Aligned_cols=16 Identities=6% Similarity=-0.008 Sum_probs=9.8
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+..+
T Consensus 14 ~GsGKST~a~~La~~l 29 (183)
T 2vli_A 14 FGVGKTHTAHTLHERL 29 (183)
T ss_dssp C----CHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHhc
Confidence 5999999999998544
No 422
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=78.51 E-value=0.92 Score=41.68 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=16.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+++++|.+ |+|||||++.+.+.
T Consensus 24 ~i~v~G~~-----~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLD-----NAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEET-----TSSHHHHHHHTCCS
T ss_pred EEEEECCC-----CCCHHHHHHHHHcC
Confidence 45556665 79999999999754
No 423
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=78.35 E-value=0.9 Score=44.75 Aligned_cols=16 Identities=0% Similarity=-0.039 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||||||||-+.|++..
T Consensus 10 ~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 10 TCSGKTDMAIQIAQET 25 (253)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcC
Confidence 4899999999999754
No 424
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=78.33 E-value=1.3 Score=40.79 Aligned_cols=15 Identities=7% Similarity=0.031 Sum_probs=13.0
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
+||||||+.+.|+..
T Consensus 15 ~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 15 PGSGKGTQCANIVRD 29 (194)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999999853
No 425
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=78.23 E-value=1 Score=46.84 Aligned_cols=23 Identities=4% Similarity=-0.016 Sum_probs=17.8
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|++ ||||||+.++|++.+.
T Consensus 27 i~l~G~~-----G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 27 VILVGSP-----GSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHHHH
T ss_pred EEEECCC-----CCcHHHHHHHHHHHhC
Confidence 4555554 8999999999998653
No 426
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=78.19 E-value=1.1 Score=40.50 Aligned_cols=15 Identities=13% Similarity=-0.115 Sum_probs=13.2
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
+||||||+.+.|+..
T Consensus 9 ~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 9 MCSGKSTVGSLLSRS 23 (168)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999864
No 427
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=77.79 E-value=1.2 Score=43.16 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=14.7
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
+||||||+.+.|+..+.
T Consensus 11 ~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 11 IAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp TTSSHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 59999999999997653
No 428
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.68 E-value=6.1 Score=50.00 Aligned_cols=49 Identities=12% Similarity=0.090 Sum_probs=33.7
Q ss_pred HHHHh--hCCCeEEEeCCCCC----------------CCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 183 ATELL--TDPALLLCDEPTTG----------------LDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 183 A~aL~--~~P~lLlLDEPTsg----------------LD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
++.+. .+|++++.|+-++= |......++...|+.++++.+.+||++.|-
T Consensus 802 ~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 802 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 34444 46999999993221 112234556668899999889999999985
No 429
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=77.53 E-value=1.3 Score=41.54 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=13.0
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
+||||||+.+.|+..
T Consensus 24 ~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 24 PGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999853
No 430
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=77.30 E-value=1.1 Score=42.10 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=17.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 32 ki~vvG~~-----~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 32 KCVVVGDG-----AVGKTCLLISYTTNA 54 (204)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECcC-----CCCHHHHHHHHHhCC
Confidence 45555554 899999999998643
No 431
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.24 E-value=0.0058 Score=61.34 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=42.0
Q ss_pred cChHHHHHHHHHHHHhhCCCe--EEEeCCCCCCCHHHH---------HHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 172 LSGGERKRLSFATELLTDPAL--LLCDEPTTGLDSFSA---------SKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~l--LlLDEPTsgLD~~~~---------~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
+|+| ||++|+++++.+|++ +++||.|+.+|...+ ..+.+.++.+ . .|+|.+.+.|.
T Consensus 173 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~-~-~g~t~~~~a~r 239 (261)
T 2eyu_A 173 KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLY-K-QGLITLEDAME 239 (261)
T ss_dssp CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHH-H-TTSSCHHHHHH
T ss_pred cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHH-H-cCCCCHHHHHH
Confidence 6888 899999999999999 999999999998742 2234444444 3 57776655553
No 432
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=77.19 E-value=1 Score=42.72 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=17.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 29 ki~vvG~~-----~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDV-----QCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCC
Confidence 44555544 899999999998754
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=77.15 E-value=1.2 Score=42.23 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=13.0
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+-.
T Consensus 9 ~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 9 PVAGKGTQAQFIMEK 23 (214)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999999853
No 434
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=77.13 E-value=1.1 Score=42.05 Aligned_cols=23 Identities=17% Similarity=0.119 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 11 ki~i~G~~-----~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDG-----AVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 44556554 899999999998654
No 435
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=76.99 E-value=1 Score=42.91 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=17.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.. |+|||||++.+.+...
T Consensus 15 ki~v~G~~-----~vGKSsli~~l~~~~~ 38 (223)
T 3cpj_B 15 KIVLIGDS-----GVGKSNLLSRFTKNEF 38 (223)
T ss_dssp EEEEESCT-----TSSHHHHHHHHHHCCC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCCC
Confidence 34555554 8999999999998653
No 436
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=76.99 E-value=1.3 Score=40.62 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=13.5
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+-+.|+..+
T Consensus 11 ~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 11 PGSGKSTIGRRLAKAL 26 (184)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc
Confidence 5899999999998643
No 437
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=76.74 E-value=1.1 Score=42.49 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=17.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++-+++..
T Consensus 40 ~i~ivG~~-----gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAI-----GSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHHH
T ss_pred EEEEEcCC-----CCCHHHHHHHHHHHh
Confidence 44555543 899999999998654
No 438
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=76.53 E-value=0.59 Score=43.51 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=2.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+++++|.+ |+|||||++.+.+.
T Consensus 22 ~i~v~G~~-----~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEA-----TVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC----------------------
T ss_pred EEEEECCC-----CCCHHHHHHHHHhC
Confidence 34555554 89999999999876
No 439
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=76.42 E-value=1.3 Score=43.12 Aligned_cols=15 Identities=7% Similarity=-0.093 Sum_probs=12.9
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+-.
T Consensus 38 ~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 38 PGSGKGTQSLNLKKS 52 (243)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999843
No 440
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=76.20 E-value=0.074 Score=58.53 Aligned_cols=74 Identities=11% Similarity=0.026 Sum_probs=56.4
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH--HhhccceeeecCCceEEe-cChHHH
Q psy2519 184 TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL--IDMFDKIILLADSRTAFI-GSKDAA 260 (622)
Q Consensus 184 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i--~~~~D~v~~L~~G~iv~~-G~~~~~ 260 (622)
|+|..| ++||+ ||.+.+|| .+..+.. ++.++.++++.+++|++ .++ .+++|++..+.++.++.. +++++.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p-~~v~l~~---eLt~~~~~~iP~vsa~m-d~~t~~~la~~ia~~gg~gii~~~~t~e~~ 100 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIA-DEVDLTS---ALTRKITLKTPLISSPM-DTVTEADMAIAMALMGGIGFIHHNCTPEFQ 100 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCG-GGCBCCE---ESSSSCEESSCEEECCC-TTTCSHHHHHHHHHTTCEEEECCSSCHHHH
T ss_pred cccccC-cEEec-cCccCCCc-ceeEEEe---eccCCeeEeceEEEEeh-hhhhhhhHHHHHHhcCCeeEEecCCCHHHH
Confidence 788899 99999 99999999 4544433 34444567889999986 466 678999999988888764 588876
Q ss_pred HHHH
Q psy2519 261 LAFL 264 (622)
Q Consensus 261 ~~~~ 264 (622)
.+..
T Consensus 101 ~~~v 104 (514)
T 1jcn_A 101 ANEV 104 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 441
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=75.79 E-value=1.3 Score=46.75 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEE---eCCCCCCCHHHHHHHHHHHHHHHh
Q psy2519 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC---DEPTTGLDSFSASKLIRMMRELTS 219 (622)
Q Consensus 143 ~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlL---DEPTsgLD~~~~~~i~~~l~~l~~ 219 (622)
.+.++++.++.... ..+ +|..+.+++.-..-+...|-++++ |.+ + ...+.++.+.+.+
T Consensus 181 ~~~~~l~~l~~~~~----~~~--------~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~------~~~l~~l~~~~~~ 241 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----PTK--------WSQDDLLAFASEIRRVNKPMVIAANKADAA-S------DEQIKRLVREEEK 241 (397)
T ss_dssp HHHHHHHHTTCCSC----GGG--------CCHHHHHHHHHHHHHHHSCEEEEEECGGGS-C------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCc----ccc--------CCHHHHHHHHHhhhccCCCEEEEEeCcccc-c------hHHHHHHHHHHhh
Confidence 45677777766433 223 899998888777777779998886 544 1 1223333333332
Q ss_pred cCCCEEEEEeccCcHHHHhh
Q psy2519 220 QRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 220 ~~g~tvi~~tH~~~~~i~~~ 239 (622)
.|..+|.++-.....+.++
T Consensus 242 -~~~~vv~iSA~~e~~l~~L 260 (397)
T 1wxq_A 242 -RGYIVIPTSAAAELTLRKA 260 (397)
T ss_dssp -TTCEEEEECHHHHHHHHSC
T ss_pred -cCCcEEEEeccchhhHHHH
Confidence 3655665554323444443
No 442
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.73 E-value=1.3 Score=44.46 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=24.4
Q ss_pred HHHHhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2519 183 ATELLTDP-ALLLCDEPTTGLDSFSASKLIRMMREL 217 (622)
Q Consensus 183 A~aL~~~P-~lLlLDEPTsgLD~~~~~~i~~~l~~l 217 (622)
..++...| .++++||. ..|++.....+.+.+.+-
T Consensus 112 ~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 112 TEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 34444444 79999998 667888888888877653
No 443
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=75.61 E-value=1.2 Score=41.56 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+||||||+.+.|+..+
T Consensus 11 ~GsGKst~~~~la~~l 26 (208)
T 3ake_A 11 SASGKSSVARRVAAAL 26 (208)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc
Confidence 5899999999998754
No 444
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=75.50 E-value=1.3 Score=40.23 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=25.3
Q ss_pred CCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 189 DPALLLCDEPTTGL----DSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 189 ~P~lLlLDEPTsgL----D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+|.+|++||--.-. +.....++.+.+..+.++.+..+|++++.+
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~ 162 (187)
T 2p65_A 115 GQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVS 162 (187)
T ss_dssp TSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHH
T ss_pred CceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHH
Confidence 57899999942211 122224455666666554456777777753
No 445
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=75.46 E-value=1.4 Score=42.27 Aligned_cols=15 Identities=7% Similarity=-0.135 Sum_probs=13.0
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+-.
T Consensus 9 ~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 9 NGSGKGTQGNLVKDK 23 (223)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999853
No 446
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=75.35 E-value=1.7 Score=42.15 Aligned_cols=27 Identities=7% Similarity=-0.101 Sum_probs=19.0
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.+.++.+-|. +||||||+.+.|+..+.
T Consensus 20 ~~~~i~~~G~----~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGI----DGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECS----TTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHHh
Confidence 3444444343 59999999999987654
No 447
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=75.29 E-value=1.6 Score=43.81 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=18.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.++++|.+ |+|||||+|.|.|...
T Consensus 122 ~v~~vG~~-----nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 122 RALIIGIP-----NVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHTSCC
T ss_pred eEEEEecC-----CCchHHHHHHHhcCce
Confidence 35555554 7999999999999764
No 448
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=75.21 E-value=1.4 Score=43.44 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+..+
T Consensus 13 pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 13 PGVGKSTFSKNLAKIL 28 (260)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5999999999998753
No 449
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=75.04 E-value=1.5 Score=39.72 Aligned_cols=15 Identities=13% Similarity=-0.144 Sum_probs=13.3
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
+||||||+-+.|+..
T Consensus 16 ~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 16 MGSGKSSLAQELGLA 30 (168)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999864
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=74.92 E-value=1.8 Score=46.06 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=13.2
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+..
T Consensus 267 pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 267 PGAGKSTFIQEHLVS 281 (416)
T ss_dssp TTSSHHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999999854
No 451
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=74.77 E-value=1.2 Score=47.99 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPT-TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPT-sgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
.|++....+...+.+++++++.... .++.+.. .++.+.+++ .++.+|++.+-
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~----~~~pvilV~NK 140 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR----TKKPVVLAVNK 140 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT----CCSCEEEEEEC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH----cCCCEEEEEEC
Confidence 3666667777778888877665554 4555543 445555442 57777777765
No 452
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=74.56 E-value=1.8 Score=43.36 Aligned_cols=13 Identities=8% Similarity=-0.018 Sum_probs=12.3
Q ss_pred CCCChHHHHHHHh
Q psy2519 64 PNVDFSELIRLFL 76 (622)
Q Consensus 64 sGaGKSTLl~~l~ 76 (622)
|||||||+.+.|+
T Consensus 84 ~GSGKSTva~~La 96 (281)
T 2f6r_A 84 SGSGKSSVAQRLK 96 (281)
T ss_dssp TTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 5999999999998
No 453
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=74.42 E-value=1.8 Score=42.29 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
+||||||+.+.|...+..
T Consensus 36 ~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 36 EGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 599999999999876643
No 454
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=74.38 E-value=1.7 Score=41.87 Aligned_cols=16 Identities=6% Similarity=0.034 Sum_probs=13.5
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+||||||+.+.|+-.+
T Consensus 25 ~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 25 PGAGKGTQAPKLAKNF 40 (233)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5899999999998543
No 455
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=73.97 E-value=1.1 Score=46.30 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=19.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.++++|.+ |+|||||++.|.|...
T Consensus 33 ~I~vvG~~-----~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 33 QIAVVGGQ-----SAGKSSVLENFVGRDF 56 (353)
T ss_dssp EEEEECBT-----TSSHHHHHHTTTTSCC
T ss_pred eEEEECCC-----CCCHHHHHHHHhCCCc
Confidence 56667665 7999999999999753
No 456
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=73.87 E-value=1.9 Score=41.40 Aligned_cols=18 Identities=6% Similarity=-0.038 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
+||||||+.+.|+..+..
T Consensus 15 ~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 15 EGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp TTSSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 599999999999876653
No 457
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=73.28 E-value=2.1 Score=44.89 Aligned_cols=27 Identities=7% Similarity=-0.057 Sum_probs=17.0
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+.++.+-|+ -||||||+++.|+..+..
T Consensus 49 ~~fIt~EG~----dGsGKTT~~~~Lae~L~~ 75 (376)
T 1of1_A 49 LLRVYIDGP----HGMGKTTTTQLLVALGSR 75 (376)
T ss_dssp EEEEEECSS----TTSSHHHHHHHHHC----
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHHhhh
Confidence 344444344 489999999999987764
No 458
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=72.92 E-value=2 Score=43.47 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 5 KI~lvG~~-----~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 5 KLLLMGRS-----GSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHSCC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 45556554 899999999988763
No 459
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=72.52 E-value=1.4 Score=44.52 Aligned_cols=15 Identities=13% Similarity=0.029 Sum_probs=10.4
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+..
T Consensus 14 sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 14 SGAGTSTVKHTFDQI 28 (290)
T ss_dssp C---CCTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999864
No 460
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=72.52 E-value=2.1 Score=40.80 Aligned_cols=18 Identities=6% Similarity=0.135 Sum_probs=15.2
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
.||||||+.+.|+..+..
T Consensus 11 dGsGKsTq~~~L~~~L~~ 28 (205)
T 4hlc_A 11 EGSGKTTVINEVYHRLVK 28 (205)
T ss_dssp TTSCHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHC
Confidence 489999999999987653
No 461
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=72.45 E-value=2.1 Score=40.16 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=29.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+|.++++||.-. +|+.....+.+.+.+.. .+..+|++++++
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~~--~~~~~i~~t~~~ 166 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEPP--EHVKFLLATTDP 166 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCC--TTEEEEEEESCG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcCC--CceEEEEEeCCh
Confidence 578999999765 78877777766665431 356788888875
No 462
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=72.12 E-value=1.6 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+++++|.+ |+|||||+|.|.|.
T Consensus 226 kV~ivG~~-----nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRP-----NVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHHH
T ss_pred EEEEEcCC-----CCCHHHHHHHHhCC
Confidence 35666665 79999999999985
No 463
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=72.04 E-value=1.2 Score=43.84 Aligned_cols=17 Identities=6% Similarity=0.004 Sum_probs=14.5
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
+||||||+.+.|+..+.
T Consensus 33 ~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 33 IAAGKSTFVNILKQLCE 49 (263)
T ss_dssp TTSSHHHHHTTTGGGCT
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 59999999999987653
No 464
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=71.84 E-value=2.3 Score=47.00 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=18.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.++++|.. |+|||||+|.|.|..
T Consensus 67 ~V~vvG~~-----n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQY-----STGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBT-----TSCHHHHHHHHHTSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCc
Confidence 45555554 799999999999975
No 465
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=71.80 E-value=1.4 Score=41.80 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=16.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHH-HhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRL-FLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~-l~g~ 78 (622)
+++++|.+ |+|||||++. +.|.
T Consensus 17 ki~v~G~~-----~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDG-----GTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECT-----TSSHHHHHTTBHHHH
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34556554 8999999998 6554
No 466
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=71.79 E-value=1.5 Score=41.49 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
-||||||..+.|+-.+..
T Consensus 9 DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 489999999999876653
No 467
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=71.56 E-value=1.8 Score=44.71 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=15.5
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
=||||||+++.|+..+..
T Consensus 16 dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 16 YGIGKSTTGRVMASAASG 33 (334)
T ss_dssp TTSSHHHHHHHHHSGGGC
T ss_pred CCCCHHHHHHHHHHHhcc
Confidence 389999999999987754
No 468
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=71.53 E-value=2.1 Score=41.21 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=12.9
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||+|.-+.|+-.
T Consensus 38 PGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 38 PGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999999854
No 469
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=71.44 E-value=2 Score=40.46 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=13.1
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
+||||||+-+.|+..
T Consensus 21 ~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 21 IGTGKSTVCEILKNK 35 (192)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 589999999999853
No 470
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=71.28 E-value=2.4 Score=42.37 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=25.6
Q ss_pred CCCeEEEeCCCC--------CCCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 189 DPALLLCDEPTT--------GLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 189 ~P~lLlLDEPTs--------gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
++.+|++||--. ..+......+.+.+.+-. .+..+|++++.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~--~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR--DDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT--TTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC--CCEEEEEeCCh
Confidence 577999999742 235555566666665421 35677777764
No 471
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=71.12 E-value=0.57 Score=43.70 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 35 ki~vvG~~-----~~GKSsli~~l~~~~~ 58 (199)
T 3l0i_B 35 KLLLIGDS-----GVGKSCLLLRFADDTY 58 (199)
T ss_dssp EEEEECCT-----TSCCTTTTTSSBCCCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCCC
Confidence 34555554 8999999999987553
No 472
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=71.04 E-value=1.7 Score=44.93 Aligned_cols=17 Identities=6% Similarity=0.071 Sum_probs=15.5
Q ss_pred CCChHHHH-HHHhCCCCC
Q psy2519 65 NVDFSELI-RLFLSQVID 81 (622)
Q Consensus 65 GaGKSTLl-~~l~g~~~~ 81 (622)
||||||++ +.|...+..
T Consensus 22 GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 22 GIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp SSCTTHHHHHHHHTTTTS
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 89999999 999988765
No 473
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=71.01 E-value=1.9 Score=41.87 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=11.7
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
+||||||+.+.|+..+.
T Consensus 34 ~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 34 DGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp C---CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 59999999999987664
No 474
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=70.89 E-value=2.7 Score=40.87 Aligned_cols=15 Identities=13% Similarity=-0.004 Sum_probs=12.8
Q ss_pred CCChHHHHHHHhCCC
Q psy2519 65 NVDFSELIRLFLSQV 79 (622)
Q Consensus 65 GaGKSTLl~~l~g~~ 79 (622)
|+|||||++.|+..+
T Consensus 24 GvGKTTl~~~La~~l 38 (262)
T 1yrb_A 24 GSGKTTLTGEFGRYL 38 (262)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 899999999998433
No 475
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=73.49 E-value=0.87 Score=42.56 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=16.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+++++|.+ |+|||||++.+.+.
T Consensus 32 ki~v~G~~-----~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDG-----AVGKTCLLISYTTN 53 (204)
Confidence 44555554 89999999988753
No 476
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=70.36 E-value=2.6 Score=39.04 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=28.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+|.++++||. ..+++.....+.+.+.+.. .+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS--KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC--CCCeEEEEeCCh
Confidence 5789999995 4567777777777776642 345677777654
No 477
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=70.05 E-value=1.8 Score=46.27 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=18.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||+|.|+|..
T Consensus 5 ~V~ivG~~-----nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRP-----NVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECST-----TSSHHHHHHHHEEEE
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 45666665 799999999999754
No 478
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=69.49 E-value=2.2 Score=44.55 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=18.1
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
....++|.+ |+|||||+|.|.|.
T Consensus 163 ~~i~~vG~~-----nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCT-----NVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCT-----TSSHHHHHHHHHHH
T ss_pred CcEEEEcCC-----CCchHHHHHHHHhh
Confidence 345666554 79999999999986
No 479
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=68.96 E-value=3 Score=40.14 Aligned_cols=18 Identities=0% Similarity=0.021 Sum_probs=15.6
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
+||||||+.+.|...+..
T Consensus 14 ~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 14 DRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp SSSSHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHhcc
Confidence 489999999999987764
No 480
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=68.87 E-value=2.3 Score=44.00 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
+|+|||||++.|++.+.
T Consensus 88 ~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 88 PGVGKSTAIEALGMHLI 104 (355)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 48999999999987653
No 481
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=68.86 E-value=2.5 Score=44.16 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=19.3
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+...+++|.+ |+|||||+|.|.|..
T Consensus 160 ~~~i~~vG~~-----nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 160 GKDVYVVGCT-----NVGKSTFINRMIKEF 184 (368)
T ss_dssp TSCEEEEEBT-----TSSHHHHHHHHHHHH
T ss_pred cceEEEecCC-----CCChhHHHHHHHhhh
Confidence 3456666665 799999999999863
No 482
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=68.19 E-value=2.3 Score=45.85 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=20.5
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+|++..+.|++ |+|||||++.|++...
T Consensus 150 kGq~~~i~G~s-----GvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 150 KGGKIGLFGGA-----GVGKTVLIQELIHNIA 176 (473)
T ss_dssp TTCEEEEECCS-----SSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCC-----CCCccHHHHHHHhhhh
Confidence 56666666554 8999999999987543
No 483
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.05 E-value=2.5 Score=47.08 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=18.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.++++|.+ |+|||||+|.|.|..
T Consensus 40 ~VaivG~p-----nvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 40 VVAIVGLY-----RTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEBT-----TSSHHHHHHHHTTCS
T ss_pred EEEEECCC-----CCCHHHHHHhHcCCC
Confidence 45566665 799999999999975
No 484
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=68.02 E-value=2.8 Score=43.29 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
.++++|.+ |||||||++.|++.
T Consensus 160 ~V~lvG~~-----nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 160 DVGLVGFP-----SVGKSTLLSVVSSA 181 (342)
T ss_dssp CEEEESST-----TSSHHHHHHHSEEE
T ss_pred eeeeeCCC-----CCCHHHHHHHHHcC
Confidence 45666654 79999999999874
No 485
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=68.01 E-value=2.4 Score=48.19 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=18.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.++++|.+ |+|||||+|.|.|..
T Consensus 71 ~V~VvG~~-----naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 71 RLLVLGDM-----KRGKSTFLNALIGEN 93 (695)
T ss_dssp EEEEECCT-----TSCHHHHHHHHHTSS
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 44555554 799999999999975
No 486
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=67.99 E-value=2.5 Score=42.21 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=12.9
Q ss_pred CCCChHHHHHHHhC
Q psy2519 64 PNVDFSELIRLFLS 77 (622)
Q Consensus 64 sGaGKSTLl~~l~g 77 (622)
|||||||+.+.|+.
T Consensus 11 ~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 11 PGSGKSTWAREFIA 24 (301)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999986
No 487
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=67.69 E-value=3.3 Score=36.66 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=28.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 190 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 190 P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
..+|++||. ..|++..+..+.+.+.... .+..+|++|..+
T Consensus 77 ~g~l~ldei-~~l~~~~q~~Ll~~l~~~~--~~~~~I~~t~~~ 116 (145)
T 3n70_A 77 GGTLVLSHP-EHLTREQQYHLVQLQSQEH--RPFRLIGIGDTS 116 (145)
T ss_dssp TSCEEEECG-GGSCHHHHHHHHHHHHSSS--CSSCEEEEESSC
T ss_pred CcEEEEcCh-HHCCHHHHHHHHHHHhhcC--CCEEEEEECCcC
Confidence 457999998 4688888888888884322 245677777764
No 488
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=67.65 E-value=2.6 Score=41.07 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+-+.|+..+
T Consensus 31 ~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 31 TASGKSSVCAKIVQLL 46 (252)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999998744
No 489
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=67.18 E-value=3.2 Score=43.76 Aligned_cols=24 Identities=4% Similarity=-0.056 Sum_probs=18.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.. |+|||||++.|+|...
T Consensus 10 ~I~vvG~~-----~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 10 NIGVVGHV-----DHGKTTLVQAITGIWT 33 (403)
T ss_dssp EEEEECST-----TSSHHHHHHHHHSCCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhCccc
Confidence 34555554 7999999999999654
No 490
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=67.14 E-value=1.9 Score=46.79 Aligned_cols=22 Identities=41% Similarity=0.329 Sum_probs=15.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||+|.|.|..
T Consensus 236 V~ivG~~-----nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 236 TVIAGKP-----NAGKSTLLNTLLGQE 257 (476)
T ss_dssp EEEECCT-----TSSHHHHHHHCC---
T ss_pred EEEECCC-----CCCHHHHHHHHhCCC
Confidence 5556554 799999999999874
No 491
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=66.69 E-value=3.4 Score=39.62 Aligned_cols=18 Identities=0% Similarity=-0.020 Sum_probs=15.2
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
+||||||+.+.|...+..
T Consensus 12 ~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 12 EGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 489999999999877653
No 492
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=66.59 E-value=4.9 Score=38.29 Aligned_cols=16 Identities=19% Similarity=0.042 Sum_probs=13.8
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||+|||||...|+.+.
T Consensus 43 sGsGKStLA~~La~~g 58 (205)
T 2qmh_A 43 SGVGKSETALELVQRG 58 (205)
T ss_dssp CTTTTHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 5899999999998654
No 493
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=66.51 E-value=0.014 Score=61.69 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=43.5
Q ss_pred cChHHHHHHHHHHHHhhCCCe--EEEeCCCCCCCHHH---H-----HHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 172 LSGGERKRLSFATELLTDPAL--LLCDEPTTGLDSFS---A-----SKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~l--LlLDEPTsgLD~~~---~-----~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
+|+| ||++|+++|..+|++ +++||.|+.||... . ..+.+...++.. .|+|.+.+.|..+
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~-~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK-QGLITLEDAMEAS 352 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTT-TSSSCTTTTTSSC
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH-CCCCCHHHHHHHc
Confidence 5888 889999999999999 99999999999752 1 123333333333 5888877777653
No 494
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=66.39 E-value=1.9 Score=42.27 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||+|||||.+.|+...
T Consensus 53 ~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 53 PGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHh
Confidence 5899999999999753
No 495
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=66.32 E-value=2.7 Score=44.75 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=18.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.|.|...
T Consensus 177 ki~lvG~~-----nvGKSSLin~l~~~~~ 200 (436)
T 2hjg_A 177 QFCLIGRP-----NVGKSSLVNAMLGEER 200 (436)
T ss_dssp EEEEECST-----TSSHHHHHHHHHTSTT
T ss_pred EEEEEcCC-----CCCHHHHHHHHhCCCc
Confidence 45555554 7999999999998643
No 496
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.13 E-value=3.1 Score=42.24 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=31.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
+++++++|| ...|++.....+.+.+.+... +..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~--~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG--VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT--TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC--CceEEEEeCchh
Confidence 567999999 788999888888888887643 345666776654
No 497
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=66.09 E-value=8 Score=37.63 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=43.9
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecc---------CcHHHHhhccceeeec
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ---------PSSELIDMFDKIILLA 247 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~---------~~~~i~~~~D~v~~L~ 247 (622)
.+.+++++||----.| +.++++.+++ .|+.||++-++ ++.++..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877644 6666666665 79999999999 8888999999999885
No 498
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=65.93 E-value=2.7 Score=46.02 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=12.8
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+|+|||||++.+++..
T Consensus 50 ~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 50 GMAGKTSLLKQLIGET 65 (535)
T ss_dssp SCSSHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHhcCC
Confidence 3799999999999854
No 499
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=65.72 E-value=3.1 Score=42.81 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=13.0
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
-||||||+++.|+..+..
T Consensus 13 dGsGKTT~~~~La~~L~~ 30 (331)
T 1e2k_A 13 HGMGKTTTTQLLVALGSR 30 (331)
T ss_dssp TTSSHHHHHHHHTC----
T ss_pred CCCCHHHHHHHHHHHhhh
Confidence 389999999999987653
No 500
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=65.58 E-value=2.9 Score=44.60 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=17.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||+|.|.|..
T Consensus 3 ~v~ivG~p-----nvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRP-----NVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHC--
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 35666665 799999999999864
Done!