RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2519
(622 letters)
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 551 bits (1421), Expect = 0.0
Identities = 228/540 (42%), Positives = 328/540 (60%), Gaps = 7/540 (1%)
Query: 85 IDGDIRVNGKPVEGK-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G + +NG P++ K R+ ++ Q DLF P+LTV EHL F A L++ RRV ++
Sbjct: 81 GSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRER 140
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
++ +L LGL +TRIG + LSGGERKRL+FA+ELLTDP LL CDEPT+GLD
Sbjct: 141 VDEVLQALGLRKCANTRIGVPG--RVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
SF A ++++++ L +Q+ KT++CTIHQPSSEL ++FDKIIL+A+ R A++GS D A+ F
Sbjct: 199 SFMAYSVVQVLKGL-AQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPF 257
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
G+PCP YNPADF ++ LAV E SR R+++ICD F+V D +++ + N +
Sbjct: 258 FSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWS 317
Query: 324 H-VGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
G ++ W+T Y L+ RS+L+V+RDP + +L Q + TA++ GL
Sbjct: 318 GKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGL 377
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
+ G LTQ+GVQ++ GALF+ +T TF ++ V++ F LP+F RE SGLY +
Sbjct: 378 IYLG-QGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAY 436
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
+L+ ++ LP II LFT I YW+ GLR+ + FL + + L+ NVATS G + S A
Sbjct: 437 FLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCA 496
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
FSS S A+ PF ++ G F S+P YF W+ YLSW Y NE L I QW V
Sbjct: 497 FSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD 556
Query: 563 NITCFD-NPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRPK 621
NI C N PC G ++ ++F +LY +LI +V+L F F LA+ L ++ R K
Sbjct: 557 NIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRK 616
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 223 bits (569), Expect = 3e-64
Identities = 153/540 (28%), Positives = 269/540 (49%), Gaps = 22/540 (4%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
G I N + + GF+ Q D+ P LTV E L F +LL+L + + ++I + S
Sbjct: 125 GTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAES 184
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
++ ELGL ++T IG+S I +SGGERKR+S A E+L +P+LL+ DEPT+GLD+ +
Sbjct: 185 VISELGLTKCENTIIGNSFIRG---ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATA 241
Query: 207 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 266
A +L+ + L +Q+ KT++ ++HQPSS + MFD +++L++ R F G A+A+ ES
Sbjct: 242 AYRLVLTLGSL-AQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFES 300
Query: 267 QGYPCPYGYNPADFLI-------KSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEI 319
G+ + NPADFL+ ++ V+ ++ + ++ L + +++
Sbjct: 301 VGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSH 360
Query: 320 NYQTH---VGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVAT 376
Q + VG+ +S +I WF +L+ RS L + + ++FQ +A
Sbjct: 361 FPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRS-LKERKHESFNTLRVFQVIAA 419
Query: 377 ALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGL 436
AL+ GL + S R VQ G LF + P ++ + FP +F +E +SG+
Sbjct: 420 ALLAGLMWWHS---DFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGM 476
Query: 437 YSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCG 496
Y+ ++++ I+ LP +I +F + YW++GL+ L FL+ +L+ + + V+ G
Sbjct: 477 YTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLG 536
Query: 497 IMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTIT 556
+ A A + +V + G FY + LP WI+Y+S YS L
Sbjct: 537 LALGAAIMDAKKA-STIVTVTMLAFVLTGGFY-VHKLPSCMAWIKYISTTFYSYRLLINV 594
Query: 557 QWQGVTNITCFDNPDLPCLEDGA--QVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFL 614
Q+ I+ LP D A + + + ++ ++ ++ + LA+L L
Sbjct: 595 QYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLAL 654
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 181 bits (460), Expect = 6e-48
Identities = 127/513 (24%), Positives = 216/513 (42%), Gaps = 55/513 (10%)
Query: 86 DGDIRVNGKP---VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK--------LDRR 134
+G I +G ++ +R + + D+ P LTV E L F A K + R
Sbjct: 119 EGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSRE 178
Query: 135 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
A + + GL ++++T++G+ + +SGGERKR+S A L +
Sbjct: 179 EYAKHIADVY---MATYGLSHTRNTKVGNDFVRG---VSGGERKRVSIAEASLGGAKIQC 232
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254
D T GLDS +A + IR ++ + T L I+Q S + ++FDK+I+L + +
Sbjct: 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF 292
Query: 255 GSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDE----LSSRRRLKRICDEFSV-- 308
G D A + E G+ CP ADFL ++T+ E +++ R EF
Sbjct: 293 GPADKAKQYFEKMGFKCPDRQTTADFLT---SLTSPAERQIKPGYEKKVPRTPQEFETYW 349
Query: 309 ------CDFAKEVDLEINYQTHVGTYDFLADFNSRKIKK-------------PFWFTIIY 349
KE+D Y D + + K F + Y
Sbjct: 350 RNSPEYAQLMKEID---EYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKY 406
Query: 350 VLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTEN 409
L R+FL + +P+ L +F + AL+ F ++ S GALF + N
Sbjct: 407 CLA-RNFLRMKGNPSFTLFMVFGNIIMALILSSVFY-NLPKNTSDFYSRGGALFFAILFN 464
Query: 410 TFSPMYSVLSQFPDMLPLF--HREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYW 467
FS + + S + + P+ HR+Y+ LY ++ I+S +P II++V+F +ILY+
Sbjct: 465 AFSSLLEIASMY-EARPIVEKHRKYA--LYHPSADAIASIISEIPFKIIESVVFNIILYF 521
Query: 468 ISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVF 527
+ R + F +LI + + ++S AM L I G
Sbjct: 522 MVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFA 581
Query: 528 YKLSSLPPYFVWIRYLSWLEYSNEALTITQWQG 560
S+ + WI Y++ L Y+ E+L + ++ G
Sbjct: 582 IPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHG 614
Score = 167 bits (424), Expect = 3e-43
Identities = 131/530 (24%), Positives = 230/530 (43%), Gaps = 74/530 (13%)
Query: 76 LSQVIDDCIIDGDIR-VNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR 134
L++ + +I G R VNG+P++ F+ + G++ Q DL P+ TV E L F A L+ +
Sbjct: 809 LAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKS 868
Query: 135 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
V +++ + ++ L + + +G L+ +RKRL+ EL+ P LLL
Sbjct: 869 VSKSEKMEYVEEVIKLLEMESYADAVVGVPGEG----LNVEQRKRLTIGVELVAKPKLLL 924
Query: 195 -CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTA 252
DEPT+GLDS +A + ++MR+L + + +LCTIHQPS+ L + FD+++LL +T
Sbjct: 925 FLDEPTSGLDSQTAWSICKLMRKL-ADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983
Query: 253 FIG--SKDAA--LAFLESQGYP-CPYGYNPADFLIK--SLAVTTNDEL--------SSRR 297
+ G +++ + + E G P CP NPA+++++ A + SS
Sbjct: 984 YFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEY 1043
Query: 298 R-----LKRICDEFSVCDFAKEVDLEINYQTHVGTYDFLADFNSRKIKKPFWFTIIYVLI 352
+ L R+ E S + + D Y W+ VL
Sbjct: 1044 QAVKNELDRLEAELSKAEDDNDPDALSKYAA------------------SLWYQFKLVLW 1085
Query: 353 SRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFS 412
R+F R P SK F + AL G F + +G+Q+ A+F+
Sbjct: 1086 -RTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKV-GTSLQGLQNQMFAVFMA-----TV 1138
Query: 413 PMYSVLSQFPDMLPLF--------HREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVI 464
++ Q LP F RE S +S F + I +P ++ +F I
Sbjct: 1139 LFNPLIQQ---YLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFI 1195
Query: 465 LYWISGLRNSLS-------VFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFD 517
Y+ G + S ++ L+ + ++ G ++F+ + A L
Sbjct: 1196 WYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLG-QMVISFNPNADNAAVLASLL 1254
Query: 518 YTLMIT-AGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITC 566
+T+ ++ GV S +P +++++ S Y +AL T V +TC
Sbjct: 1255 FTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADV-PVTC 1303
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 163 bits (416), Expect = 8e-47
Identities = 66/174 (37%), Positives = 103/174 (59%), Gaps = 11/174 (6%)
Query: 84 IIDGDIRVNGKPVE-GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G I NG+P + +F+ ++ Q D+ P LTV E L + A+L+L R+ R
Sbjct: 62 TTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK 121
Query: 143 LI-NSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
+ + LL +L TRIG + + +SGGER+R+S A +LL DP +L+ DEPT+G
Sbjct: 122 RVEDVLLRDLA-----LTRIGGNLVKG---ISGGERRRVSIAVQLLWDPKVLILDEPTSG 173
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
LDSF+A L+ + +L ++R + V+ TIHQP S+L +FD+I+LL+ + G
Sbjct: 174 LDSFTALNLVSTLSQL-ARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 151 bits (383), Expect = 2e-42
Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 42/174 (24%)
Query: 83 CIIDGDIRVNGKPV-EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
+ G++ +NG+P+ + FR G++ Q D+ P+LTV E L F A L+
Sbjct: 62 LGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----------- 110
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
LSGGERKR+S A EL+++P+LL DEPT+G
Sbjct: 111 -----------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSG 141
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
LDS SA +++ ++R L + +T++C+IHQPSSE+ ++FDK++LL+ R + G
Sbjct: 142 LDSSSALQVMSLLRRL-ADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 140 bits (356), Expect = 1e-37
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 18/202 (8%)
Query: 71 LIRLFLSQVIDDCIIDGDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127
L+++ + G+I V G V K R G++ Q P LTV E+L F A
Sbjct: 47 LLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFA 103
Query: 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187
L + +A +RI LL GL + + ++ + LSGG ++RLS A LL
Sbjct: 104 RLYGLSKEEAEERI---EELLELFGLEDKANKKVRT--------LSGGMKQRLSIALALL 152
Query: 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247
DP LL+ DEPT+GLD S ++ ++REL + T+L + H E ++ D++I+L
Sbjct: 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHI-LEEAEELCDRVIILN 211
Query: 248 DSRTAFIGSKDAALAFLESQGY 269
D + G+ + +G
Sbjct: 212 DGKIIAEGTPEELKEKFGGKGV 233
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 136 bits (345), Expect = 2e-33
Identities = 147/579 (25%), Positives = 259/579 (44%), Gaps = 105/579 (18%)
Query: 85 IDGDIRVNGKP-VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
I+GDIR++G P + F G+ Q+D+ SP +TV E L + A L+L + V +++
Sbjct: 935 IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMF 994
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
++ ++ + L N + +G +T LS +RKRL+ A EL+ +P+++ DEPT+GLD
Sbjct: 995 VDEVMELVELDNLKDAIVGLPGVTG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DSRTAFIG----SKD 258
+ +A+ ++R +R T +TV+CTIHQPS ++ + FD+++L+ + + G +
Sbjct: 1052 ARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSH 1110
Query: 259 AALAFLES-QGYP-CPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVD 316
+ + E+ G P YNPA +++ E+SS A EV
Sbjct: 1111 KIIEYFEAIPGVPKIKEKYNPATWML---------EVSS---------------LAAEVK 1146
Query: 317 LEINYQTHVGTYDFLADFNSRKIK---------KPFWFTIIYVLISRSFLNVV------- 360
L I++ H + L N +K +F Y S+S
Sbjct: 1147 LGIDFAEHYKSSS-LYQRNKALVKELSTPPPGASDLYFATQY---SQSTWGQFKSCLWKQ 1202
Query: 361 -----RDPAIQLSKLFQKVATALMCGLCF-------AGSIDLTQRGVQSVQGALFIMVTE 408
R P L + F +A ALM G F + + DLT LF+ +
Sbjct: 1203 WWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINN 1262
Query: 409 -NTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYW 467
+T PM +V +F+RE ++G+YSA + ++ ++ +P ++IQ +T+I+Y
Sbjct: 1263 CSTVQPMVAVERT------VFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYA 1316
Query: 468 ISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVF 527
+ + + F I T G+M +VS L P I A F
Sbjct: 1317 MVAFEWTAAKFFWFYFISFFSFLYFTYYGMM------TVS-----LTPNQQVAAIFAAAF 1365
Query: 528 YKLSSL-----------PPYFVWIRYLSWLEYSNEALTITQWQGV-TNITCFDNPDLPCL 575
Y L +L P ++VW ++ + ++ L ++Q+ V I P +
Sbjct: 1366 YGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTI 1425
Query: 576 EDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFL 614
+ Q ++ + PD + P +A V++ F T+ F F+
Sbjct: 1426 KWYIQ--DHYGYDPDFMGP--VAAVLVGF---TVFFAFI 1457
Score = 105 bits (263), Expect = 2e-23
Identities = 142/603 (23%), Positives = 256/603 (42%), Gaps = 108/603 (17%)
Query: 85 IDGDIRVNGKPVEGKF--RSACGFMYQHDLFSPSLTVYEHLYFMA-----------LLKL 131
+ G+I NG + +F R ++ Q+D+ +TV E L F A L +L
Sbjct: 221 VSGEITYNGYRLN-EFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSEL 279
Query: 132 DRR---------------VKAYQRIALINSLLIE-----LGLMNSQHTRIGSSSITQKVV 171
RR +KA + +SL+ + LGL + T +G I
Sbjct: 280 ARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG--- 336
Query: 172 LSGGERKRLSFATELLTDPA-LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+SGG++KR++ E++ P L DE +TGLDS + ++++ ++++ + TVL ++
Sbjct: 337 ISGGQKKRVT-TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLL 395
Query: 231 QPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTN 290
QP+ E D+FD IILL++ + + G +D L F ES G+ CP ADFL
Sbjct: 396 QPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFL--------- 446
Query: 291 DELSSRRRLKRICDE-------FSVCDFAKEVDLEINYQTHVGT---YDFLADFN-SRKI 339
E++S++ ++ + SV +FA+ HVG + F+ S+
Sbjct: 447 QEVTSKKDQEQYWADRNKPYRYISVSEFAERFK-----SFHVGMQLENELSVPFDKSQSH 501
Query: 340 KKPFWFT--------IIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLT 391
K F+ ++ + +L + R+ + + K Q + A + F + T
Sbjct: 502 KAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT 561
Query: 392 QR---GVQSVQGALFIMVTE--NTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSY 446
+ G + LF M+ N F+ + ++ + LP+F+++ + + F L
Sbjct: 562 RNEEDGALYIGALLFSMIINMFNGFAELALMIQR----LPVFYKQRDLLFHPPWTFTLPT 617
Query: 447 ILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATS-----CGIMFSL 501
L +P II++V++ VI Y+ G S F +L+ LI +A + ++
Sbjct: 618 FLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTM 677
Query: 502 AFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQ---- 557
++ A+ L+ F + G +P ++ W ++S L Y AL + +
Sbjct: 678 IIANTGGALVLLLVF-----LLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP 732
Query: 558 -WQGVTNITCFDNPDLPCLEDGAQVINNMN-FSPDNLY----PNLIAMVVLYFAFHTLAF 611
W N DN G V+N + F+ N Y L+ +L+ TLA
Sbjct: 733 RWM---NKMASDN----STRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLAL 785
Query: 612 LFL 614
+L
Sbjct: 786 TYL 788
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 125 bits (315), Expect = 8e-33
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 5/212 (2%)
Query: 348 IYVLISRSFLNVVRDP-AIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMV 406
+ L+ R FL RDP L +L Q + AL+ G F T G + G LF +
Sbjct: 3 LKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL--DTSLGGLNRPGLLFFSI 60
Query: 407 TENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILY 466
N FS + + F + RE +S LYS + L+ IL LP ++QA++F +I+Y
Sbjct: 61 LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVY 120
Query: 467 WISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGV 526
++ GL +S F + +L+ +L A+ G+ + S A L++ +G
Sbjct: 121 FMVGLP--VSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGF 178
Query: 527 FYKLSSLPPYFVWIRYLSWLEYSNEALTITQW 558
F + S+P + WI YL+ L Y+ EAL ++
Sbjct: 179 FIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 119 bits (300), Expect = 5e-31
Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 41/172 (23%)
Query: 76 LSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRV 135
L+ +I G+I +NG+P++ F+ + G++ Q D+ SP+LTV E L F ALL+
Sbjct: 53 LAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR----- 107
Query: 136 KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 195
LS +RKRL+ EL P++L
Sbjct: 108 -----------------------------------GLSVEQRKRLTIGVELAAKPSILFL 132
Query: 196 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247
DEPT+GLDS +A ++R +++L + +LCTIHQPS+ + + FD+++LL
Sbjct: 133 DEPTSGLDSQAAYNIVRFLKKLADS-GQAILCTIHQPSASIFEKFDRLLLLK 183
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 96.2 bits (240), Expect = 8e-23
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 37/174 (21%)
Query: 85 IDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
++GDI NG P + K+ ++ + D+ P+LTV E L F K + V+
Sbjct: 63 VEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVR----- 117
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
+SGGERKR+S A L++ ++L D T G
Sbjct: 118 -----------------------------GISGGERKRVSIAEALVSRASVLCWDNSTRG 148
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
LDS +A ++++ +R + K T +++Q S E+ D+FDK+++L + R + G
Sbjct: 149 LDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 94.9 bits (237), Expect = 3e-22
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 21/175 (12%)
Query: 87 GDIRVNGKPVEGKFRSAC----GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G +NG + R A G+ Q D LTV EHL F A LK + +
Sbjct: 57 GTAYINGYSI-RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKE 112
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
+ LL LGL + + R + LSGG +++LS A L+ P++LL DEPT+GL
Sbjct: 113 EVELLLRVLGLTDKANKRART--------LSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGS 256
D S + ++ E+ R +++ T H S + + D+I +++D + IGS
Sbjct: 165 DPASRRAIWDLILEVRKGR--SIILTTH--SMDEAEALCDRIAIMSDGKLRCIGS 215
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 94.2 bits (235), Expect = 5e-22
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 21/174 (12%)
Query: 87 GDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLK--LDRRVKAYQRI 141
G IR++G+ V K R G++ Q P+ TV E L ++A LK + VKA
Sbjct: 54 GTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKAR--- 110
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
++ +L + L + +IGS LSGG R+R+ A L+ DP++L+ DEPT G
Sbjct: 111 --VDEVLELVNLGDRAKKKIGS--------LSGGMRRRVGIAQALVGDPSILIVDEPTAG 160
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
LD + ++ EL R V+ + H ++ + +++ +L + F G
Sbjct: 161 LDPEERIRFRNLLSELGEDR--IVILSTHI-VEDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 94.1 bits (235), Expect = 7e-22
Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 22/171 (12%)
Query: 87 GDIRVNGKPVEG-------KFR-SACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKA 137
G++ +NGK + K R GF++Q +L P LTV E++ L+ A
Sbjct: 60 GEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL-PDLTVLENVELPLLI---AGKSA 115
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+R LL LGL + + ++ LSGG+++R++ A L+ +P ++L DE
Sbjct: 116 GRRKRAAEELLEVLGLEDRLLKK----KPSE---LSGGQQQRVAIARALINNPKIILADE 168
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
PT LDS +A +++ ++REL +R KT++ H P EL D++I L D
Sbjct: 169 PTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD 217
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 94.1 bits (235), Expect = 7e-22
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 29/174 (16%)
Query: 87 GDIRVNGKPVEG-------KFRSA-CGFMYQHDLFSPSLTVYEH----LYFMALLKLDRR 134
G++RV+G + FR GF++Q P LT E+ L + K +RR
Sbjct: 59 GEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR 118
Query: 135 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
+A + LL +GL + + LSGG+++R++ A L DP ++L
Sbjct: 119 ERAEE-------LLERVGLGDRLNHYPSE--------LSGGQQQRVAIARALANDPKIIL 163
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
DEPT LDS + +++ ++REL + T++ H P EL + D+II L D
Sbjct: 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRD 215
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 90.2 bits (225), Expect = 1e-20
Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 24/174 (13%)
Query: 85 IDGDIRVNGKPVE----GKFRSACGFMYQ---HDLFSPSLTVYEHLYF-MALLKLDRRVK 136
G++ V+GK + + R G ++Q F P TV E + F + L L
Sbjct: 54 TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP--TVEEEVAFGLENLGLPE--- 108
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
+ + L +GL + + LSGG+++R++ A L DP +LL D
Sbjct: 109 -EEIEERVEEALELVGLEGLRDRSPFT--------LSGGQKQRVAIAGVLAMDPDILLLD 159
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
EPT GLD +L+ ++++L ++ K ++ T H L+++ D++I+L D +
Sbjct: 160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVT-HDL-DLLLELADRVIVLEDGK 211
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 86.4 bits (215), Expect = 5e-19
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQHD-LFSPSLTVYEHLYFMAL--LKLDRRVK 136
G++ ++G+ + G + R G ++Q LF SLTV+E++ F +L
Sbjct: 55 GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD-SLTVFENVAFPLREHTRLSEEE- 112
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
+ I L L +GL ++ LSGG +KR++ A L DP LLL D
Sbjct: 113 -IREIVL--EKLEAVGLRGAEDLYPAE--------LSGGMKKRVALARALALDPELLLYD 161
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
EPT GLD ++ + ++R L + T + H + D+I +L D + G+
Sbjct: 162 EPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD-LDTAFAIADRIAVLYDGKIVAEGT 220
Query: 257 KDAALA 262
+ A
Sbjct: 221 PEELRA 226
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 84.4 bits (210), Expect = 5e-19
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 52/167 (31%)
Query: 87 GDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G+I+V GK + + + G++ + +LTV E+L
Sbjct: 55 GEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------------------- 95
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LSGG ++RL+ A LL DP LL+ DEPT+GLD
Sbjct: 96 ----------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD 127
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
S + ++REL + KT+L + H E + D++ +L + R
Sbjct: 128 PESRREFWELLREL-KKEGKTILLSSHIL-EEAERLCDRVAILNNGR 172
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 83.4 bits (207), Expect = 7e-19
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+R++ A LL +P LLL DEPT+GLD S +L+ ++REL ++ +TV+ H
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHD 139
Query: 232 PSSELIDMFDKIILLADSR 250
P D++I+L D +
Sbjct: 140 P-ELAELAADRVIVLKDGK 157
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 85.3 bits (212), Expect = 8e-19
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 22/168 (13%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPS--LTVYEHLYFMALLKLDRRVKAYQRI--- 141
G IRV GKP+E K R G++ Q ++V + + L+ L ++R+
Sbjct: 54 GSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPISVRD----VVLMGLYGHKGLFRRLSKA 108
Query: 142 --ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
A ++ L +GL +IG LSGG+++R+ A L+ DP LLL DEP
Sbjct: 109 DKAKVDEALERVGLSELADRQIGE--------LSGGQQQRVLLARALVQDPDLLLLDEPF 160
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247
G+D + + ++REL + T+L H +++ FD+++LL
Sbjct: 161 AGVDPKTQEDIYELLREL-RREGMTILVVTHDLGL-VLEYFDRVLLLN 206
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 86.1 bits (214), Expect = 9e-19
Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 36/209 (17%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD-LFSPSLTVY 120
S L+RL L + D G+I ++G+ + + R G ++Q LFS SLTV+
Sbjct: 48 STLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFS-SLTVF 103
Query: 121 EHLYFM--ALLKLDRRVKAYQRIALINSLLIELG-----LMNSQHTRIGSSSITQKVVLS 173
E++ F KL + + + L+ L+ L L S+ LS
Sbjct: 104 ENVAFPLREHTKLPESL--IRELVLMKLELVGLRGAAADLYPSE--------------LS 147
Query: 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233
GG RKR++ A + DP LL DEPT+GLD SA + ++REL TV+ H
Sbjct: 148 GGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207
Query: 234 SELIDMFDKIILLADSRTAFIGSKDAALA 262
S L+ + D++ +LAD + G+ + LA
Sbjct: 208 S-LLTIADRVAVLADGKVIAEGTPEELLA 235
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 84.6 bits (210), Expect = 2e-18
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 25/186 (13%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSAC-GFMYQHDLFSPS--LTVYEHLYF 125
S L++ L + G+I++ GKPV + + G++ Q S +TV +
Sbjct: 44 STLLKAILGLLKPSS---GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKD---V 97
Query: 126 MAL-----LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180
+ L RR+ + ++ L +G+ + + +IG LSGG+++R+
Sbjct: 98 VLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIGE--------LSGGQKQRV 148
Query: 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240
A L +P LLL DEP TG+D ++ +++EL Q KTVL H ++ F
Sbjct: 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL-RQEGKTVLMVTHDL-GLVMAYF 206
Query: 241 DKIILL 246
D++I L
Sbjct: 207 DRVICL 212
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 80.8 bits (200), Expect = 4e-17
Identities = 67/210 (31%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 68 FSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSA---CGFMYQHDLFSPSLTVYEHL- 123
FS L RL+++Q +G I V G + R+A G ++Q L+V ++L
Sbjct: 44 FSLLTRLYVAQ-------EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLR 96
Query: 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA 183
Y AL L R A RIA LL LGL ++ L+GG R+R+ A
Sbjct: 97 YHAALHGLSRAE-ARARIA---ELLARLGLAERADDKVRE--------LNGGHRRRVEIA 144
Query: 184 TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH-----QPSSELID 238
LL PALLL DEPT GLD S + + +R L + +VL H + L+
Sbjct: 145 RALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLV- 203
Query: 239 MFDKIILLADSRTAFI----GSKDAALAFL 264
+ + +LAD A + G D AFL
Sbjct: 204 VLHRGRVLADGAAAELRGATGGADLEAAFL 233
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 80.3 bits (199), Expect = 6e-17
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEH-----LYFMALLK-LDRRV-K 136
I DI + R G ++Q L+V E+ L + + L K
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
++ AL + L +GL++ + R LSGG+++R++ A L+ P L+L D
Sbjct: 120 EEKQRAL--AALERVGLLDKAYQRADQ--------LSGGQQQRVAIARALMQQPKLILAD 169
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI-DMFDKIILLADSRTAFIG 255
EP LD S+ +++ +++ + + TV+ ++HQ +L + D+I+ L D R F G
Sbjct: 170 EPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV--DLAREYADRIVGLKDGRIVFDG 227
Query: 256 SKDA 259
Sbjct: 228 PPAE 231
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 80.0 bits (198), Expect = 7e-17
Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 20/188 (10%)
Query: 85 IDGDIRVNGKPVEGK-----FRSACGFMYQH-DLFSPSLTVYEHLYFMAL-LKLDRRVKA 137
G++ V+G + R G ++Q+ D TV + + F L L R
Sbjct: 57 TSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEI- 115
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ L +GL + LSGG+++R++ A L P +LL DE
Sbjct: 116 ---EERVAEALELVGLEELLDRPPFN--------LSGGQKQRVAIAGVLAMGPEILLLDE 164
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257
PT GLD +L+ ++++L + KT++ H +++ D++++L D + G
Sbjct: 165 PTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDP 223
Query: 258 DAALAFLE 265
E
Sbjct: 224 AEIFNDAE 231
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 78.1 bits (193), Expect = 2e-16
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164
G ++Q P L V E+L F LK R + + + L L+ H + +
Sbjct: 78 GLVFQQYALFPHLNVRENLAFG--LKRKRNREDRISVDEL------LDLLGLDH--LLNR 127
Query: 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224
Q LSGGE++R++ A L P LLL DEP + LD +L+ ++++
Sbjct: 128 YPAQ---LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP 184
Query: 225 VLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
V+ H SE + D+I+++ D R +IG
Sbjct: 185 VIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 74.9 bits (185), Expect = 1e-15
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 52/170 (30%)
Query: 87 GDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G I ++G+ + R G ++Q P LTV E+
Sbjct: 55 GSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLEN------------------ 96
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
I LGL SGG+++R++ A L DP +LL DEPT+
Sbjct: 97 --------IALGL-------------------SGGQQQRVALARALAMDPDVLLLDEPTS 129
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
LD + ++ +++ L +Q TV+ H E + D++++L D +
Sbjct: 130 ALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 72.0 bits (177), Expect = 3e-15
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 23/137 (16%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHL 123
S L++L + G I ++G+ G R G ++Q P LTV E+L
Sbjct: 1 STLLKLITGLLQPTS---GTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA 183
+F ++ + A L +GL + + LSGG+++R++ A
Sbjct: 58 FF--------GLRDKEADARAEEALERVGLPDFLDREPVGT-------LSGGQKQRVAIA 102
Query: 184 TELLTDPALLLCDEPTT 200
LL P LLL DEPT
Sbjct: 103 RALLKKPKLLLLDEPTA 119
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 74.0 bits (183), Expect = 5e-15
Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 13/160 (8%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
G++ V+G+PV G G+++Q D P LTV +++ L+L + V +
Sbjct: 59 GEVLVDGEPVTGP-GPDRGYVFQQDALLPWLTVLDNVAL--GLEL-QGVPKAEARERAEE 114
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
LL +GL ++ LSGG R+R++ A L DP +LL DEP + LD+ +
Sbjct: 115 LLELVGLSGFENAYPHQ--------LSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166
Query: 207 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
+L + ++ + KTVL H E + + D++++L
Sbjct: 167 REQLQEELLDIWRETGKTVLLVTHD-IDEAVFLADRVVVL 205
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 73.4 bits (181), Expect = 6e-15
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 16/165 (9%)
Query: 84 IIDGD--IRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
++G +N K R G+++Q+ + TV E+L LK + K ++
Sbjct: 56 YLNGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENL--DLGLKYKKLSKK-EKR 112
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
L ++GL +I LSGGE++R++ A +L P L+L DEPT
Sbjct: 113 EKKKEALEKVGLNLKLKQKIYE--------LSGGEQQRVALARAILKPPPLILADEPTGS 164
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
LD + +++ ++ EL + KT++ H P E+ D++I L
Sbjct: 165 LDPKNRDEVLDLLLELNDE-GKTIIIVTHDP--EVAKQADRVIEL 206
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 73.3 bits (181), Expect = 8e-15
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 87 GDIRVNGKPVEG--KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G+I ++G+ V G R G ++Q LF P LTV E++ F LKL R V + A
Sbjct: 55 GEILIDGRDVTGVPPERRNIGMVFQDYALF-PHLTVAENIAFG--LKL-RGVPKAEIRAR 110
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ LL +GL + LSGG+++R++ A L +P+LLL DEP + LD
Sbjct: 111 VRELLELVGLEGLLNRYPHE--------LSGGQQQRVALARALAREPSLLLLDEPLSALD 162
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
+ +L ++EL + T + H E + + D+I ++ + R
Sbjct: 163 AKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGR 208
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 74.5 bits (183), Expect = 2e-14
Identities = 56/170 (32%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSA---CGFMYQHDLFSPSLTVYEHL-- 123
S + R+ L D G I V G PV + R A G + Q D TV E+L
Sbjct: 81 STIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLV 137
Query: 124 ---YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180
YF + + A+I SLL + R+ S + + LSGG ++RL
Sbjct: 138 FGRYF--------GMSTREIEAVIPSLL--------EFARLESKADARVSDLSGGMKRRL 181
Query: 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+ A L+ DP LL+ DEPTTGLD + + +R L + R KT+L T H
Sbjct: 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTH 230
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 72.3 bits (178), Expect = 2e-14
Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 21/173 (12%)
Query: 86 DGDIRVNGKPVEG-------KFRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKA 137
+G ++V G+ + G + R G+++Q H+L LT +++ MAL +L +
Sbjct: 59 EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL-GFLTARQNVQ-MAL-ELQPNLSY 115
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ ++L +GL + + LSGG+++R++ A L+ P L+L DE
Sbjct: 116 QEARERARAMLEAVGLGDHLDYYPHN--------LSGGQKQRVAIARALVHRPKLVLADE 167
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
PT LDS S ++ +M++L ++ T+L H ++D+ D+I+ + D +
Sbjct: 168 PTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN--RILDVADRIVHMEDGK 218
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 72.2 bits (178), Expect = 2e-14
Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 84 IIDGDIRVNGKPVEGK-------FRSACGFMYQHDLFS--PSLTVYEHLYFMALLKLDRR 134
G I +GK + R ++Q + S P +T+ E + +
Sbjct: 57 PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS 116
Query: 135 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
K ++ A++ LL+ +GL + + + LSGG+R+R++ A L +P LL+
Sbjct: 117 KKEARKEAVLL-LLVGVGL----PEEVLNRYPHE---LSGGQRQRVAIARALALNPKLLI 168
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
DEPT+ LD ++++ ++++L + T+L
Sbjct: 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLL 200
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 70.9 bits (175), Expect = 3e-14
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187
L L + A ++IA + L LGL + LSGGER+R+ A L
Sbjct: 63 LASLSPKELA-RKIAYVPQALELLGLAHLADRPFNE--------LSGGERQRVLLARALA 113
Query: 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247
+P +LL DEPT+ LD +L+ ++R L +R KTV+ +H + D++ILL
Sbjct: 114 QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR-YADRVILLK 172
Query: 248 DSRTAFIG 255
D R G
Sbjct: 173 DGRIVAQG 180
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 72.2 bits (178), Expect = 3e-14
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 13/162 (8%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
G++ ++G+PV G G+++Q D P LTV +++ L+L R +
Sbjct: 58 GEVLLDGRPVTGPGP-DIGYVFQEDALLPWLTVLDNVAL--GLEL-RGKSKAEARERAKE 113
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
LL +GL + LSGG R+R++ A L T P LLL DEP LD+ +
Sbjct: 114 LLELVGLAGFEDKYPH--------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 207 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
+L + L + +KTVL H E + + D++++L++
Sbjct: 166 REELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSN 206
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 71.2 bits (175), Expect = 6e-14
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 23/173 (13%)
Query: 87 GDIRVNGKPVE-------GKFRS-ACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKA 137
G++ NG+ + K R+ GF+YQ H L P T E++ M LL + VK
Sbjct: 60 GEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL-PDFTALENV-AMPLLIGKKSVKE 117
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ A +L ++GL + + R LSGGER+R++ A L+ P+L+L DE
Sbjct: 118 AKERAY--EMLEKVGLEHRINHRPSE--------LSGGERQRVAIARALVNQPSLVLADE 167
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
PT LD+ +A + +M EL + + L H EL D+++ + D +
Sbjct: 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL--ELAKKLDRVLEMKDGQ 218
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 71.9 bits (176), Expect = 1e-13
Identities = 68/221 (30%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFR---SACGFMYQHDLFSPSLTVYEHL-- 123
S + R+ L + D G I V G+PV + R A G + Q D P TV E+L
Sbjct: 44 STIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLV 100
Query: 124 ---YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180
YF + + A+I SLL + R+ S + + +LSGG ++RL
Sbjct: 101 FGRYF--------GMSTREIEAVIPSLL--------EFARLESKADVRVALLSGGMKRRL 144
Query: 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240
+ A L+ DP LL+ DEPTTGLD + + +R L + R KT+L T H E +
Sbjct: 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHF-MEEAERLC 202
Query: 241 DKIILLADSRTAFIGSKDAALAFLESQGYPCP----YGYNP 277
D++ +L R G A L + C YG +P
Sbjct: 203 DRLCVLESGRKIAEGRPHA----LIDEQIGCNVIEIYGGDP 239
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 71.1 bits (175), Expect = 1e-13
Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 42/209 (20%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLTVYE 121
S L+R L+ ++D G+I NG + K R G ++Q P L+V E
Sbjct: 44 STLLRS-LNGLVD--PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLE 100
Query: 122 HLYFMALLKLDRR----------VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171
++ L +L K + AL L +G+++ + R +
Sbjct: 101 NV---LLGRLGYTSTWRSLFGLFSKEDKAQAL--DALERVGILDKAYQRAST-------- 147
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L+ P ++L DEP LD SA K++ +++++ + TV+ +HQ
Sbjct: 148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207
Query: 232 PSSELIDM----FDKIILLADSRTAFIGS 256
+D+ D+II L R F G
Sbjct: 208 -----VDLAKKYADRIIGLKAGRIVFDGP 231
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 70.1 bits (172), Expect = 1e-13
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 85 IDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIAL 143
+DG V +P E + R GF+ LT E+L YF L L + A
Sbjct: 64 VDG-FDVVKEPAEARRR--LGFVSDSTGLYDRLTARENLEYFAGLYGLKGD----ELTAR 116
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ L LG+ R+G S G R++++ A L+ DP +LL DEPTTGLD
Sbjct: 117 LEELADRLGMEELLDRRVGG--------FSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168
Query: 204 SFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDKIILLADSRTAFIG 255
+ L +R+L + K + T I Q L D++++L R + G
Sbjct: 169 VMATRALREFIRQLRALGKCILFSTHIMQEVERLC---DRVVVLHRGRVVYEG 218
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 69.9 bits (172), Expect = 2e-13
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 22/154 (14%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQH-DLFSPSLTVYEHLYFMAL-LKLDRRVKA 137
G + V+G + K R G ++QH +L S S TV+E++ AL L++ KA
Sbjct: 60 GSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS-SRTVFENV---ALPLEIAGVPKA 115
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ + LL +GL + LSGG+++R+ A L +P +LLCDE
Sbjct: 116 -EIEERVLELLELVGLEDKADAYPAQ--------LSGGQKQRVGIARALANNPKVLLCDE 166
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
T+ LD + ++ ++R++ + T++ H+
Sbjct: 167 ATSALDPETTQSILALLRDINRELGLTIVLITHE 200
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 68.8 bits (169), Expect = 2e-13
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 25/168 (14%)
Query: 86 DGDIRVNGKPVEGKFR-SACGFMYQ---HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
G I +NGKP++ K R + G++ Q + LF+ S V E L L L ++
Sbjct: 54 SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDS--VREELL----LGLKELDAGNEQA 107
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
+ L +L + +H LSGG+++RL+ A LL+ LL+ DEPT+G
Sbjct: 108 ETVLKDL-DLYALKERHPLS----------LSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILLAD 248
LD + ++ ++REL +Q K V+ H E + D+++LLA+
Sbjct: 157 LDYKNMERVGELIRELAAQ-GKAVIVITHDY--EFLAKVCDRVLLLAN 201
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 69.6 bits (171), Expect = 3e-13
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 30/203 (14%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLTVYE 121
S L+R ++++++ G I + G + K R G ++QH LTV E
Sbjct: 42 STLLRC-INRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLE 98
Query: 122 H-----LYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174
+ L + + L R + + AL S L +GL + + R LSG
Sbjct: 99 NVLHGRLGYKPTWRSLLGRFSEEDKERAL--SALERVGLADKAYQRADQ--------LSG 148
Query: 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234
G+++R++ A L P L+L DEP LD ++ +++ ++ + + TV+ +HQ
Sbjct: 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ--V 206
Query: 235 ELIDMF-DKIILLADSRTAFIGS 256
+L + D+I+ L F G+
Sbjct: 207 DLAKKYADRIVGLKAGEIVFDGA 229
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 69.1 bits (169), Expect = 3e-13
Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 87 GDIRVNGKPV--EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI 144
G IR+NG+ GF++QH LTV +++ F L++ + KA + A +
Sbjct: 55 GRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFG--LEIRKHPKAKIK-ARV 111
Query: 145 NSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204
LL + L +G Q LSGG+R+R++ A L +P +LL DEP LD+
Sbjct: 112 EELLELVQL-----EGLGDRYPNQ---LSGGQRQRVALARALAVEPQVLLLDEPFGALDA 163
Query: 205 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+L +R+L + T + H E +++ D+I+++++ + IGS D
Sbjct: 164 KVRKELRSWLRKLHDEVHVTTVFVTHD-QEEAMEVADRIVVMSNGKIEQIGSPD 216
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 69.5 bits (171), Expect = 4e-13
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 32/186 (17%)
Query: 85 IDGDIRVNGKPVEGK----FRSACGFMYQHDLFSPSLTVYE---------HLYFMALLKL 131
G++ ++GK + ++ Q LTVYE F K
Sbjct: 55 KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKE 114
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
D + + L LGL + + LSGGER+R+ A L +
Sbjct: 115 DEEI--------VEEALELLGLEHLADRPVDE--------LSGGERQRVLIARALAQETP 158
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILLADSR 250
+LL DEPT+ LD +++ ++R+L ++ TV+ +H L + D +ILL D +
Sbjct: 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL--NLAARYADHLILLKDGK 216
Query: 251 TAFIGS 256
G+
Sbjct: 217 IVAQGT 222
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 69.4 bits (170), Expect = 6e-13
Identities = 54/153 (35%), Positives = 73/153 (47%), Gaps = 27/153 (17%)
Query: 87 GDIRVNGKPVEGKFRSA---CGFMYQHDLFSPSLTVYEHL-----YFMALLKLDRRVKAY 138
G I + G+PV + R A G + Q D P TV E+L YF + A
Sbjct: 62 GSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF--------GLSAA 113
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
AL+ LL L N ++G LSGG ++RL+ A L+ DP +L+ DEP
Sbjct: 114 AARALVPPLLEFAKLENKADAKVGE--------LSGGMKRRLTLARALVNDPDVLVLDEP 165
Query: 199 TTGLDSFSASKLI-RMMRELTSQRKKTVLCTIH 230
TTGLD A L+ +R L + R KT+L T H
Sbjct: 166 TTGLDP-QARHLMWERLRSLLA-RGKTILLTTH 196
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 67.9 bits (167), Expect = 6e-13
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 34/178 (19%)
Query: 87 GDIRVNGKPVEG------KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKA-Y 138
G I ++G + + R G ++Q +LF P LTV E++ +A +K+ KA
Sbjct: 55 GTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLF-PHLTVLENI-TLAPIKVKGMSKAEA 112
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ AL LL ++GL + LSGG+++R++ A L +P ++L DEP
Sbjct: 113 EERAL--ELLEKVGLADKADAYPAQ--------LSGGQQQRVAIARALAMNPKVMLFDEP 162
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-F-----DKIILLADSR 250
T+ LD +++ +M++L ++ T++ H +M F D++I + D R
Sbjct: 163 TSALDPELVGEVLDVMKDL-AEEGMTMVVVTH-------EMGFAREVADRVIFMDDGR 212
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 71.1 bits (175), Expect = 7e-13
Identities = 38/178 (21%), Positives = 81/178 (45%), Gaps = 29/178 (16%)
Query: 84 IIDGDIRVNGKPV----EGKFRSACG----FMYQH--DLFSPSLTVYEHLYFMALLKLDR 133
I G++ ++G+ + E + R G ++Q +P +T+ + + L+L
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQI--REALRLHG 122
Query: 134 RVKAYQRIALINSLLIELGL----MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189
+ + LL ++GL ++ LSGG R+R+ A L
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPH----------QLSGGMRQRVMIAMALALK 172
Query: 190 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI-DMFDKIILL 246
P LL+ DEPTT LD + ++++ ++++L + VL H ++ ++ D+++++
Sbjct: 173 PKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL--GVVAELADRVVVM 228
Score = 58.4 bits (142), Expect = 6e-09
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 87 GDIRVNGKPV---EGKFRSA-----CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAY 138
G I +G+ + G+ R F + +P +TV + L L++
Sbjct: 346 GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDIL--AEPLRIHGGGSGA 403
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCD 196
+R A + LL +GL + LSGG+R+R++ A L +P LL+ D
Sbjct: 404 ERRARVAELLELVGL---------PPEFLDRYPHELSGGQRQRVAIARALALEPKLLILD 454
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
EP + LD ++++ ++++L + T L
Sbjct: 455 EPVSALDVSVQAQVLNLLKDLQEELGLTYL 484
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 68.0 bits (167), Expect = 9e-13
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 22/179 (12%)
Query: 87 GDIRVNG-----KPVEGKFRSACGFMYQ-HDLFSPSLTVYEHLY-FMALLKLDRRVKAYQ 139
G I ++G P+ + R G++ Q +F LTV E++ + + L ++ +
Sbjct: 55 GKILLDGQDITKLPMHKRARLGIGYLPQEASIFR-KLTVEENILAVLEIRGLSKK----E 109
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
R + LL E + + + ++ SS LSGGER+R+ A L T+P LL DEP
Sbjct: 110 REEKLEELLEEFHITHLRKSK-ASS-------LSGGERRRVEIARALATNPKFLLLDEPF 161
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
G+D + + ++++ L R VL T H E + + D+ ++ + + G+ +
Sbjct: 162 AGVDPIAVQDIQKIIKIL-KDRGIGVLITDHN-VRETLSITDRAYIIYEGKVLAEGTPE 218
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 68.2 bits (167), Expect = 9e-13
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 13/162 (8%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
G I++NG+ +EG + G ++Q++ P L V +++ F L+L R ++ QR + +
Sbjct: 59 RGSIQLNGRRIEGP-GAERGVVFQNEALLPWLNVIDNVAFG--LQL-RGIEKAQRREIAH 114
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
+L +GL ++H I LSGG R+R+ A L +P LLL DEP LD+
Sbjct: 115 QMLALVGLEGAEHKYI--------WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDAL 166
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247
+ ++ ++ +L + K VL H L + ++++L+
Sbjct: 167 TREQMQELLLDLWQETGKQVLLITHDIEEALF-LATRLVVLS 207
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 67.4 bits (165), Expect = 1e-12
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 87 GDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G V G V + R G ++Q LT +E+LY A L + +RI
Sbjct: 55 GRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERID- 113
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LL +GL+ + + + SGG R+RL A L+ P +L DEPT GLD
Sbjct: 114 --ELLDFVGLLEAADRLVKT--------YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIH 230
+ + + + +L + T+L T H
Sbjct: 164 PQTRAHVWEYIEKLKEEFGMTILLTTH 190
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 65.9 bits (162), Expect = 1e-12
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+LSGG+R+R++ A LL DP +L+ DE T+ LD + + ++ +R L + KTV+ H
Sbjct: 96 ILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA--KGKTVIVIAH 153
Query: 231 QPSSELIDMFDKIILLADSR 250
+ S+ I D+II+L D R
Sbjct: 154 RLST--IRDADRIIVLDDGR 171
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 66.2 bits (162), Expect = 3e-12
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 22/177 (12%)
Query: 87 GDIRVNGK-----PVEGKFRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G I +NGK P E + ++ Q + LF P +TVY+++ + + + + ++
Sbjct: 54 GKILLNGKDITNLPPE---KRDISYVPQNYALF-PHMTVYKNIAYGLKKRKVDKKEIERK 109
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ I +L L+N + LSGGE++R++ A L+ +P +LL DEP +
Sbjct: 110 VLEIAEMLGIDHLLNRKPET-----------LSGGEQQRVAIARALVVNPKILLLDEPFS 158
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257
LD + KL ++++ + TVL H E + DK+ ++ + + +G
Sbjct: 159 ALDVRTKEKLREELKKIRKEFGVTVLHVTHD-FEEAWALADKVAIMLNGKLIQVGKP 214
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 65.3 bits (160), Expect = 8e-12
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 36/161 (22%)
Query: 87 GDIRVNGKPVEGK----------FRSACGFMYQHDLFSPSLTVYE--------HLYFMAL 128
G + G+ + G R+ +Q P LTV E L L
Sbjct: 59 GTVIFRGRDITGLPPHRIARLGIART-----FQITRLFPGLTVLENVAVGAHARLGLSGL 113
Query: 129 LKLDRRVKAYQRI---ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185
L R K + A LL +GL G+ LS G+++RL A
Sbjct: 114 LGRPRARKEEREARERAR--ELLEFVGLGELADRPAGN--------LSYGQQRRLEIARA 163
Query: 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
L T P LLL DEP GL+ +L ++REL + T+L
Sbjct: 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTIL 204
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 65.4 bits (160), Expect = 9e-12
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 19/147 (12%)
Query: 87 GDIRVNGKPVEGK-----FRSACGFMYQHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQ 139
G I ++GKP+ K F ++Q S P TV L L+ K+ Q
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQ 119
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
RIA LL ++GL S R + LSGG+R+R++ A L+ +P LL+ DEPT
Sbjct: 120 RIA---ELLDQVGLPPSFLDR----RPHE---LSGGQRQRIAIARALIPEPKLLILDEPT 169
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVL 226
+ LD ++++ ++ EL +R T L
Sbjct: 170 SALDVSVQAQILNLLLELKKERGLTYL 196
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 63.5 bits (155), Expect = 1e-11
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
SGGER+RL+ A LL D ++L DEPT GLD + +L+ ++ E+ + KT++ H
Sbjct: 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHH 156
Query: 232 PSSELIDMFDKIILLADSRTAFIG 255
+ I+ DKI+ L + + G
Sbjct: 157 LTG--IEHMDKILFLENGKIIMQG 178
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 65.0 bits (159), Expect = 1e-11
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 19/174 (10%)
Query: 87 GDIRVNGKP---VEGKF--RSACGF--MYQHDLFSPSLTVYEHLY--FMALLKLDRRVKA 137
GD+ + G+ E F R G H+ F TV + + F A + + +
Sbjct: 86 GDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLT 145
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ +A LL LG + GS LS GE++R+ A L+ DP LL+ DE
Sbjct: 146 AEDLAAAQWLLELLGAKHLADRPFGS--------LSQGEQRRVLIARALVKDPELLILDE 197
Query: 198 PTTGLDSFSASKLIRMMREL-TSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
P GLD + +L+ + EL S +L H E+ F +LL +
Sbjct: 198 PAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGE 250
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 63.8 bits (156), Expect = 2e-11
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 25/170 (14%)
Query: 87 GDIRVNGKPV--EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI 144
G+I +GK + G + + F P+LT E+L +A L R+ I
Sbjct: 55 GEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRK-------KRI 107
Query: 145 NSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204
+ +L +GL +S ++ S+ G ++RL A LL +P LL+ DEPT GLD
Sbjct: 108 DEVLDVVGLKDSAKKKVKGFSL--------GMKQRLGIALALLGNPDLLILDEPTNGLDP 159
Query: 205 FSASKLIRMMRELT---SQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251
I+ +REL + TVL + H SE+ + D+I ++ +
Sbjct: 160 DG----IKELRELILSLRDQGITVLISSHL-LSEIQKVADRIGIINKGKL 204
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 63.5 bits (155), Expect = 2e-11
Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 18/188 (9%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128
+ IR+ L ++ D G++ +GKP++ R+ G++ + P + V + L ++A
Sbjct: 40 TTTIRMILGIILPD---SGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQ 96
Query: 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
LK ++ +A +RI + L L L + R+ LS G ++++ F ++
Sbjct: 97 LKGLKKEEARRRI---DEWLERLELSEYANKRVEE--------LSKGNQQKVQFIAAVIH 145
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI-DMFDKIILLA 247
DP LL+ DEP +GLD + L ++REL KTV+ + HQ EL+ ++ D+++LL
Sbjct: 146 DPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQ--MELVEELCDRVLLLN 202
Query: 248 DSRTAFIG 255
R G
Sbjct: 203 KGRAVLYG 210
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 65.1 bits (159), Expect = 3e-11
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164
GF++QH P +TV +++ F ++ +R +A R A + LL L+ +
Sbjct: 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR-ARVEELLR---LVQLEGL--ADR 133
Query: 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224
Q LSGG+R+R++ A L +P +LL DEP LD+ +L R +R+L + T
Sbjct: 134 YPAQ---LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT 190
Query: 225 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 259
+ H E +++ D++++L R +G D
Sbjct: 191 TVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDE 224
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 62.8 bits (153), Expect = 3e-11
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYF-MALLKLDRRVKAY 138
G IRVNG+ V R G ++Q P VYE++ F + + + R
Sbjct: 56 GTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPRE-IR 114
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+R+ + L +GL + LSGGE++R++ A ++ P +L+ DEP
Sbjct: 115 KRVP---AALELVGLSHKHRALPAE--------LSGGEQQRVAIARAIVNSPTILIADEP 163
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238
T LD + +++ +++++ ++ TV+ H + EL+D
Sbjct: 164 TGNLDPDTTWEIMNLLKKI-NKAGTTVVVATH--AKELVD 200
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 65.4 bits (160), Expect = 4e-11
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 18/182 (9%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPV----EGKFRSACGFMYQHDLFSPSLTVYEHLY 124
S L+ L L V +G I VNG P+ +R ++ QH T+ E++
Sbjct: 362 STLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIR 417
Query: 125 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFAT 184
D ++ A ++ + L T IG LSGG+ +RL+ A
Sbjct: 418 LARPDASDAEIREALERAGLDEFVAALPQG--LDTPIGEGG----AGLSGGQAQRLALAR 471
Query: 185 ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244
L D LLL DEPT LD+ + ++++ +R L R TVL H+ L + D+I+
Sbjct: 472 AFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGR--TVLLVTHRL--ALAALADRIV 527
Query: 245 LL 246
+L
Sbjct: 528 VL 529
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 62.8 bits (153), Expect = 4e-11
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 21/172 (12%)
Query: 87 GDIRVNGKPVEG-------KFRSA-CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAY 138
G++R+ G+P+ R+ GF++Q P+LT E++ L+ + +
Sbjct: 65 GEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSR 124
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+LL +GL R+ LSGGE++R++ A P +L DEP
Sbjct: 125 AGAK---ALLEAVGLGK----RLTHYPAQ----LSGGEQQRVALARAFAGRPDVLFADEP 173
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
T LD + K+ ++ L +R T++ H P L D+ + L R
Sbjct: 174 TGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGR 223
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 62.7 bits (153), Expect = 4e-11
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 36/179 (20%)
Query: 87 GDIRVNGKPVE-------GKFRSACGFMYQHDLFSPSLTVYEHLYFMALL-------KLD 132
G +R+ G+ V R G ++Q P TVYE++ L ++
Sbjct: 57 GQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVAL-PLEVRGKKEREIQ 115
Query: 133 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192
RRV A L ++GL + LSGGE++R++ A ++ P L
Sbjct: 116 RRVGA---------ALRQVGLEHKADAFPEQ--------LSGGEQQRVAIARAIVNSPPL 158
Query: 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK-IILLADSR 250
LL DEPT LD + +++ +++ L ++R TV+ H L+D +I+L D R
Sbjct: 159 LLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIVATHDL--SLVDRVAHRVIILDDGR 214
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 62.8 bits (154), Expect = 4e-11
Identities = 45/161 (27%), Positives = 64/161 (39%), Gaps = 39/161 (24%)
Query: 87 GDIRVNGKPVEGK----------FRSACGFMYQHD-LFSPSLTVYE----------HLYF 125
G + +G+ + G R+ +Q LF P LTV E
Sbjct: 55 GSVLFDGEDITGLPPHEIARLGIGRT-----FQIPRLF-PELTVLENVMVAAQARTGSGL 108
Query: 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185
+ +A +R LL +GL + G LS G+++RL A
Sbjct: 109 LLARARREEREARERAE---ELLERVGLADLADRPAGE--------LSYGQQRRLEIARA 157
Query: 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
L TDP LLL DEP GL+ +L ++REL +R TVL
Sbjct: 158 LATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVL 197
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 64.8 bits (158), Expect = 6e-11
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 87 GDIRVNGKPVEGKF----RSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
G+I ++G + R G + Q LFS T+ E++ D ++ ++
Sbjct: 384 GEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS--GTIRENIALGRPDATDEEIEEALKL 441
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
A + + L + T +G + LSGG+R+RL+ A LL +P +L+ DE T+
Sbjct: 442 ANAHEFIANLP--DGYDTIVGERGVN----LSGGQRQRLAIARALLRNPPILILDEATSA 495
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261
LD+ + + + +++L + +T L H+ S+ I D+II+L + R G+ + L
Sbjct: 496 LDTETEALIQDALKKLL--KGRTTLIIAHRLST--IKNADRIIVLDNGRIVERGTHEELL 551
Query: 262 A 262
A
Sbjct: 552 A 552
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 62.6 bits (153), Expect = 6e-11
Identities = 48/177 (27%), Positives = 91/177 (51%), Gaps = 15/177 (8%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKL-DRRVKAYQRI 141
I+ D + P+ + R G++ Q +F LTV +++ MA+L++ ++ +K +R
Sbjct: 61 ILLDDEDITKLPMHKRARLGIGYLPQEASIFR-KLTVEDNI--MAVLEIREKDLKKAERK 117
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
+++LL E + + + ++ S LSGGER+R+ A L +P +L DEP G
Sbjct: 118 EELDALLEEFHITHLRDSKAYS--------LSGGERRRVEIARALAANPKFILLDEPFAG 169
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+D + + R+++ L R VL T H E +D+ D+ +++D + GS +
Sbjct: 170 VDPIAVIDIQRIIKHLKD-RGIGVLITDHN-VRETLDICDRAYIISDGKVLAEGSPE 224
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 62.2 bits (151), Expect = 7e-11
Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 20/168 (11%)
Query: 86 DGDIRVNGKPVEG----KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G + G+ V +R + Q LF TV ++L F ++ R R
Sbjct: 57 SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD--TVEDNLIFPWQIRNRR----PDR 110
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
A ++ LL L I + +IT+ LSGGE++R++ L P +LL DE T+
Sbjct: 111 AAALD-LLARFAL----PDSILTKNITE---LSGGEKQRIALIRNLQFMPKILLLDEITS 162
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
LD + + M+ ++ VL H + I DK+I L
Sbjct: 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQP 209
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 64.9 bits (159), Expect = 7e-11
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+ ++ A LL DP +LL DEPT+ +D+ S + ++ + KT++ H+
Sbjct: 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHR 659
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALAFL 264
S L+D+ D+II++ + R G KD L L
Sbjct: 660 TS--LLDLVDRIIVMDNGRIVADGPKDQVLEAL 690
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 62.0 bits (151), Expect = 9e-11
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 117 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176
LT E+L + A L R + RIA L L L+ R+G S G
Sbjct: 90 LTARENLKYFARLNGLSRKEIKARIA---ELSKRLQLLEYLDRRVGE--------FSTGM 138
Query: 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236
+++++ A L+ DP++L+ DEPT+GLD + K +++L ++ + + + E+
Sbjct: 139 KQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS--HIMQEV 196
Query: 237 IDMFDKIILLADSRTAFIGSKDAALA 262
+ D++I+L GS +A A
Sbjct: 197 EALCDRVIVLHKGEVVLEGSIEALDA 222
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 61.5 bits (150), Expect = 1e-10
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+ ++ A LL DP +LL DEPT+ +D S +L +R+L KT++ H+
Sbjct: 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD--KTLIIITHR 198
Query: 232 PSSELIDMFDKIILLADSR 250
PS L+D+ D+II++ R
Sbjct: 199 PS--LLDLVDRIIVMDSGR 215
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 62.0 bits (151), Expect = 1e-10
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 15/162 (9%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF-MALLKLDRRVKAYQRIALIN 145
G I ++GKPVEG + G ++Q++ P V +++ F + L +++ QR+ + +
Sbjct: 56 GSITLDGKPVEGP-GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM----QRLEIAH 110
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
+L ++GL ++ I LSGG+R+R+ A L +P LLL DEP LD+F
Sbjct: 111 QMLKKVGLEGAEKRYIWQ--------LSGGQRQRVGIARALAANPQLLLLDEPFGALDAF 162
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247
+ ++ ++ +L + K VL H E + M +++LL+
Sbjct: 163 TREQMQTLLLKLWQETGKQVLLITHD-IEEAVFMATELVLLS 203
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 61.5 bits (150), Expect = 1e-10
Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE++R++ A +L +P +LL DE T+ LD+ + ++ +R+++ + +T + H+
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS--KGRTTIVIAHR 195
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S +++ DKII+L D R G+ + LA
Sbjct: 196 -LSTIVNA-DKIIVLKDGRIVERGTHEELLA 224
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 63.0 bits (154), Expect = 2e-10
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 87 GDIRVNGKPVE----GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVK-AYQRI 141
G+IRVNG + +R ++ Q+ + T+ E++ D + A +
Sbjct: 376 GEIRVNGIDLRDLSPEAWRKQISWVSQNPYL-FAGTIRENILLARPDASDEEIIAALDQA 434
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
L+ + GL T IG LSGG+ +RL+ A LL+ +LLL DEPT
Sbjct: 435 GLLEFVPKPDGL----DTVIGEGGAG----LSGGQAQRLALARALLSPASLLLLDEPTAH 486
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
LD+ + +++ ++EL ++KTVL H+ E D+I++L + R G+
Sbjct: 487 LDAETEQIILQALQELA--KQKTVLVITHRL--EDAADADRIVVLDNGRLVEQGT 537
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 61.8 bits (151), Expect = 3e-10
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG R+R+ A L +P LL+ DEPTT LD ++++ +++EL ++ ++ H
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 62.8 bits (153), Expect = 3e-10
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
T +G LSGGER+RL+ A LL D +LL DEPT LD+ +A +L+ +
Sbjct: 462 DTVLGEGGAR----LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAA 517
Query: 218 TSQRKKTVLCTIHQP 232
S R TV+ H
Sbjct: 518 LSGR--TVVLITHHL 530
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 60.3 bits (146), Expect = 3e-10
Identities = 39/173 (22%), Positives = 84/173 (48%), Gaps = 18/173 (10%)
Query: 87 GDIRVNGKPVEGK--FRSACGFMYQ-HDLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIA 142
G I+VN + G ++ ++Q ++LF LTV +++ L L ++ A Q+
Sbjct: 53 GSIKVNDQSHTGLAPYQRPVSMLFQENNLF-AHLTVRQNI---GLGLHPGLKLNAEQQ-E 107
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
+ ++G+ + LSGG+R+R++ A L+ +LL DEP + L
Sbjct: 108 KVVDAAQQVGIADYLDRLPEQ--------LSGGQRQRVALARCLVRPNPILLLDEPFSAL 159
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
D +++ ++++L S+R++T+L H S+ + +I +++ + +
Sbjct: 160 DPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVS 211
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 61.9 bits (151), Expect = 3e-10
Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
Query: 87 GDIRVNGKPVEGK--FRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G+I ++G+ + + G ++Q + LF P +TV E++ F LK+ +++K + A
Sbjct: 60 GEILLDGEDITDVPPEKRPIGMVFQSYALF-PHMTVEENVAFG--LKVRKKLKKAEIKAR 116
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ L +GL Q LSGG+++R++ A L+ +P +LL DEP + LD
Sbjct: 117 VEEALELVGL--EGF---ADRKPHQ---LSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
+ ++ + ++EL + T + H E + M D+I ++ D R +G+
Sbjct: 169 AKLREQMRKELKELQRELGITFVYVTH-DQEEALAMSDRIAVMNDGRIEQVGT 220
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 60.6 bits (147), Expect = 3e-10
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 37/184 (20%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGK--------PVEGKFRSACGFMYQHDLFSPSLT 118
S L+R F L ++ ++ ++G++R+ G+ P+E R G ++Q+ P LT
Sbjct: 44 STLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE--VRREVGMVFQYPNPFPHLT 101
Query: 119 VYEH----LYFMALLK----LDRRVK-AYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169
+Y++ + L+K LD RV+ A ++ AL + + L S
Sbjct: 102 IYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSN------------ 149
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
LSGG+R+RL A L P +LL DEPT +D +K+ ++ EL +++ T++
Sbjct: 150 --LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL--KKEYTIVLVT 205
Query: 230 HQPS 233
H P+
Sbjct: 206 HSPA 209
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 60.2 bits (147), Expect = 4e-10
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 35/188 (18%)
Query: 86 DGDIRVNGKPVEGK-----FRSACGFMYQH-DLFSPSLTVYEHLYF--MALLKLDRRVKA 137
G I V+G+ V K R G ++Q +LF P LTV E++ + + KL + +A
Sbjct: 56 SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF-PHLTVLENVTLAPVKVKKLSKA-EA 113
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
++ AL LL ++GL + LSGG+++R++ A L DP ++L DE
Sbjct: 114 REK-AL--ELLEKVGLADKADAYPAQ--------LSGGQQQRVAIARALAMDPKVMLFDE 162
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-F-----DKIILLADSRT 251
PT+ LD +++ +M++L ++ T++ H +M F D++I + +
Sbjct: 163 PTSALDPELVGEVLDVMKDL-AEEGMTMIIVTH-------EMGFAREVADRVIFMDQGKI 214
Query: 252 AFIGSKDA 259
G +
Sbjct: 215 IEEGPPEE 222
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 60.2 bits (146), Expect = 4e-10
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ + R TV+
Sbjct: 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGR--TVII 192
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
H+ S+ + D+II++ R GS D LA
Sbjct: 193 IAHRLST--VKNADRIIVMEKGRIVEQGSHDELLA 225
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 59.9 bits (146), Expect = 4e-10
Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQH-DLFSPSLTV 119
S L+RL L+ +I +G++ ++GK + R G ++Q + F ++
Sbjct: 40 STLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP--GSI 97
Query: 120 YEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178
Y+++ A L+L + + L + L + R+ + LSGG+++
Sbjct: 98 YDNV---AYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALG------LSGGQQQ 148
Query: 179 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
RL A L +P +LL DEPT+ LD S +K+ ++ EL +++ T++ H
Sbjct: 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAEL--KKEYTIVIVTH 198
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 59.9 bits (146), Expect = 4e-10
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 19/182 (10%)
Query: 87 GDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G I ++G V R G + Q D+F + TV E++ + V+ R A
Sbjct: 57 GRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAA 115
Query: 143 LINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ ++EL G T IG + LSGG+R+R++ A LL DP +L+ DE T+
Sbjct: 116 NAHEFIMELPEGY----DTVIGERGVK----LSGGQRQRIAIARALLKDPPILILDEATS 167
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260
LD+ S + + L R T H+ S+ I+ D+I++L D + G+ +
Sbjct: 168 ALDTESERLVQAALERLMKNR--TTFVIAHRLST--IENADRIVVLEDGKIVERGTHEEL 223
Query: 261 LA 262
LA
Sbjct: 224 LA 225
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 59.8 bits (145), Expect = 5e-10
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164
GF+YQ P T E++ M LL ++ AL +L +GL + + R S
Sbjct: 90 GFIYQFHHLLPDFTALENVA-MPLLIGKKKPAEINSRAL--EMLAAVGLEHRANHR--PS 144
Query: 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224
LSGGER+R++ A L+ +P L+L DEPT LD+ +A + +++ EL +
Sbjct: 145 E------LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTA 198
Query: 225 VLCTIH 230
L H
Sbjct: 199 FLVVTH 204
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 59.0 bits (143), Expect = 7e-10
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGER+R++ A L+ D +LL DEP LD ++++ ++ +L ++ K TVL HQ
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188
Query: 232 PSSELIDMFDKIILLADSRTAFIG 255
P + + +++ L + R A G
Sbjct: 189 P-EDAKRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 59.4 bits (145), Expect = 7e-10
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 87 GDIRVNGKPVEGK---FRSACGFMY---QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G I +G+ + G R+ G Y +F P LTV E+L + + +
Sbjct: 58 GRIIFDGEDITGLPPHERARLGIAYVPEGRRIF-PRLTVEENL-LLGAYARRDKEAQERD 115
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ + L L ++ R G+ LSGGE++ L+ A L++ P LLL DEP+
Sbjct: 116 LEEVYELFPRLKER--RNQRAGT--------LSGGEQQMLAIARALMSRPKLLLLDEPSE 165
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVL 226
GL ++ ++EL + T+L
Sbjct: 166 GLAPKIVEEIFEAIKELRKEGGMTIL 191
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 61.2 bits (149), Expect = 8e-10
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 87 GDIRVNGKPV----EGKFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRV-KAYQR 140
G I +NG + E R + Q LFS +L ++L D + A Q+
Sbjct: 393 GSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLR--DNLRLANPDASDEELWAALQQ 450
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ L L + +T +G LSGGER+RL+ A LL D L L DEPT
Sbjct: 451 VGLEKLLE---SAPDGLNTWLGEGGRR----LSGGERRRLALARALLHDAPLWLLDEPTE 503
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
GLD + +++ ++ E KT+L H+ ++ D+II+L + + G
Sbjct: 504 GLDPITERQVLALLFEHA--EGKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEG 554
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 60.0 bits (146), Expect = 1e-09
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 40/233 (17%)
Query: 86 DGDIRVNGKPV----EGKFRSACGFMYQ-HDLFSPSLTVYEHLYFM-ALLKLDRRVKAYQ 139
G+I ++G+ + + R G++ Q LF P LTV E++ + LL D+ + +
Sbjct: 55 SGEILIDGEDISDLDPVELRRKIGYVIQQIGLF-PHLTVAENIATVPKLLGWDKE-RIKK 112
Query: 140 RIALINSLLIELGLMNSQH-TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
R + LL +GL S++ R LSGG+++R+ A L DP +LL DEP
Sbjct: 113 RA---DELLDLVGLDPSEYADRYPHE-------LSGGQQQRVGVARALAADPPILLMDEP 162
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
LD + +L ++EL + KT++ H E + + D+I ++ + D
Sbjct: 163 FGALDPITRKQLQEEIKELQKELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPD 221
Query: 259 AALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDF 311
LA NPA+ ++ R R+ SV D
Sbjct: 222 EILA-------------NPANDFVEDF-------FGESERGLRLLSLVSVADA 254
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 60.4 bits (147), Expect = 1e-09
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
++ ++A ++ L+ L L + T IG T LSGG+R+R++ A L DP
Sbjct: 421 PEKIIEAAKLAGVHELI--LRLPDGYDTVIGPGGAT----LSGGQRQRIALARALYGDPK 474
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251
L++ DEP + LD L ++ L R TV+ H+PS L+ DKI++L D R
Sbjct: 475 LVVLDEPNSNLDEEGEQALANAIKAL-KARGITVVVITHRPS--LLGCVDKILVLQDGRI 531
Query: 252 AFIGSKDAALAFL 264
A G +D LA L
Sbjct: 532 ARFGERDEVLAKL 544
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 60.7 bits (148), Expect = 1e-09
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+RL+ A LL+ P +LL DE T+ LD + + +++ + ++ + +TV+ H+
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI--LQGRTVIIIAHR 667
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S+ I D+II+L + GS + LA
Sbjct: 668 LST--IRSADRIIVLDQGKIVEQGSHEELLA 696
Score = 33.0 bits (76), Expect = 0.50
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 425 LPL-FHREYSSGLYSAFQFYLSYIL----SSLPGLIIQ---AVLFTVILYWISGLRNSLS 476
LPL + + S G + L I S+ LII A++F +++ S
Sbjct: 240 LPLSYFEKRSVGEIISRVRELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWK----- 294
Query: 477 VFLMAVLICILII 489
+ L+ + L +
Sbjct: 295 LTLIVLAAIPLNV 307
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 60.4 bits (147), Expect = 1e-09
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 218
TRIG T LSGG+R+R++ A L DP L++ DEP + LDS + L +
Sbjct: 464 TRIGEGGAT----LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA- 518
Query: 219 SQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
R TV+ H+PS + DKI++L D R A G ++ LA
Sbjct: 519 KARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLA 560
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 58.5 bits (141), Expect = 2e-09
Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 86 DGDIRVNG-KPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI 144
D DI G PV R G ++Q P++++Y+++ +A KL+ RV + ++
Sbjct: 70 DTDIYDRGVDPV--SIRRRVGMVFQKPNPFPAMSIYDNV--IAGYKLNGRVNRSEADEIV 125
Query: 145 NSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204
S L + L + R+ S+++ LSGG+++RL A + P ++L DEP + LD
Sbjct: 126 ESSLKRVALWDEVKDRLKSNAME----LSGGQQQRLCIARTIAVKPEVILMDEPASALDP 181
Query: 205 FSASKLIRMMRELTSQRKKTVLCTIH 230
S K+ ++ EL K T++ H
Sbjct: 182 ISTLKIEELIEELK--EKYTIIIVTH 205
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 59.2 bits (144), Expect = 2e-09
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 27/174 (15%)
Query: 69 SELIRLF--LS-----QVIDDCIIDGD--IRVNGKPVEGKFRSACGFMYQH-DLFSPSLT 118
S L+RL L V +DG ++ + + R G ++QH +L S S T
Sbjct: 46 STLLRLINLLERPTSGSVF----VDGQDLTALSEAELR-QLRQKIGMIFQHFNLLS-SRT 99
Query: 119 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178
V+E++ F L+L KA + + LL +GL + LSGG+++
Sbjct: 100 VFENVAFP--LELAGVPKA-EIKQRVAELLELVGLSDKADRYPAQ--------LSGGQKQ 148
Query: 179 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
R++ A L +P +LLCDE T+ LD + ++ +++++ + T++ H+
Sbjct: 149 RVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM 202
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 59.4 bits (144), Expect = 2e-09
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 101 RSACGFMYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 159
+ G+++Q P L+V +L Y M +R + +R ++ LG+ +
Sbjct: 74 KRRIGYVFQEARLFPHLSVRGNLRYGM------KRARPSERRISFERVIELLGIGHLLGR 127
Query: 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 219
G LSGGE++R++ LL+ P LLL DEP LD +++ + L +
Sbjct: 128 LPGR--------LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA 179
Query: 220 QRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG-------SKDAALAFLESQGY 269
+ +L H E++ + D++++L D R A G S D E QG
Sbjct: 180 EFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGS 235
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 59.8 bits (146), Expect = 2e-09
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 36/177 (20%)
Query: 87 GDIRVNGKPVEGK---FRSACGFMY------QHDLFSPSLTVYEHLYFMALLKLDRRVKA 137
G+I ++GKPV + G Y L +++ E + L L R +
Sbjct: 314 GEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLV-LDMSIAE---NITLASLRRFSRR 369
Query: 138 YQRI-----ALINSLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
AL + L + S IG+ LSGG ++++ A L TDP
Sbjct: 370 GLIDRRKERALAERYIRRLRIKTPSPEQPIGT--------LSGGNQQKVVLARWLATDPK 421
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
+L+ DEPT G+D + +++ R++REL ++ K ++ I SSEL +++ L+D
Sbjct: 422 VLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILM--I---SSEL----PELLGLSD 469
Score = 58.7 bits (143), Expect = 5e-09
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 86 DGDIRVNGKPVEGKFRSAC-------GFMYQHDLFSPSLTVYEHLYFMALLK-----LDR 133
G+I ++GKPV F S ++Q P+L+V E+++ +DR
Sbjct: 62 SGEILIDGKPVA--FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDR 119
Query: 134 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 193
+ +R LL LGL T +G LS +R+ + A L D +L
Sbjct: 120 K-AMRRRAR---ELLARLGLDIDPDTLVGD--------LSIAQRQMVEIARALSFDARVL 167
Query: 194 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253
+ DEPT L +L ++R L +Q + + H+ E+ ++ D+I +L D R
Sbjct: 168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYIS-HRL-DEVFEIADRITVLRDGRV-- 223
Query: 254 IGSKDAALAFLESQ 267
+G++ A E +
Sbjct: 224 VGTRPTAAETSEDE 237
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 58.1 bits (140), Expect = 2e-09
Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 14/140 (10%)
Query: 85 IDGDIRVNGKPVEGK----FRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAY- 138
IDG + + GK V+ + R G ++Q ++F S +YE++ + KL +K
Sbjct: 58 IDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKS--IYENISYAP--KLHGMIKNKD 113
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ AL+ L ++GL ++ +++ LSGG+++RL A L P LLL DEP
Sbjct: 114 EEEALVVDCLQKVGLFEEVKDKLKQNALA----LSGGQQQRLCIARALAIKPKLLLLDEP 169
Query: 199 TTGLDSFSASKLIRMMRELT 218
T+ LD S+ + +++EL+
Sbjct: 170 TSALDPISSGVIEELLKELS 189
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 58.0 bits (140), Expect = 2e-09
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
I D DI + P+ + R G++ Q L+VY++L MA+L++ + A QR
Sbjct: 62 IDDEDISL--LPLHARARRGIGYLPQEASIFRRLSVYDNL--MAVLQIRDDLSAEQREDR 117
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
N L+ E + +H R S+ Q LSGGER+R+ A L +P +L DEP G+D
Sbjct: 118 ANELMEEF---HIEHLR---DSMGQS--LSGGERRRVEIARALAANPKFILLDEPFAGVD 169
Query: 204 SFSA---SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260
S ++I +R+ VL T H E + + ++ +++ G+
Sbjct: 170 PISVIDIKRIIEHLRD----SGLGVLITDHN-VRETLAVCERAYIVSQGHLIAHGTPTEI 224
Query: 261 LA 262
L
Sbjct: 225 LQ 226
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 58.6 bits (142), Expect = 2e-09
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 117 LTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
LT E+L M L L + A +R LL L + +G+ SGG
Sbjct: 81 LTGRENLEMMGRLYGLPKDE-AEERAE---ELLELFELGEAADRPVGT--------YSGG 128
Query: 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
R+RL A L+ P +L DEPTTGLD + + +R L + T+L T H
Sbjct: 129 MRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTH 182
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 57.3 bits (139), Expect = 3e-09
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LS G+R R A LL +P +L DEPT GLD + + ++E +R TVL T H
Sbjct: 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 57.9 bits (140), Expect = 3e-09
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 39/187 (20%)
Query: 87 GDIRVNGKPVE------GKFRSACGFMYQ---HDLFSPSLTVYEHLYFMAL-LKL-DRRV 135
G I +GKP++ K R + G ++Q + LFS S VY+ + F A+ LKL + V
Sbjct: 61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS--VYQDVSFGAVNLKLPEDEV 118
Query: 136 KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV--LSGGERKRLSFATELLTDPALL 193
+ AL R G + K LS G++KR++ A L+ +P +L
Sbjct: 119 RKRVDNAL---------------KRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163
Query: 194 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF----DKIILLADS 249
+ DEPT GLD S++++++ E+ + T++ H ID+ D + ++ +
Sbjct: 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD-----IDIVPLYCDNVFVMKEG 218
Query: 250 RTAFIGS 256
R G+
Sbjct: 219 RVILQGN 225
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 57.4 bits (139), Expect = 3e-09
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+R++ A L+ + +LL DEP + LD ++++ ++ +L +RK T+L H
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
P + + D+++ L + R A GS L+
Sbjct: 190 P-EDAARIADRVVFLDNGRIAAQGSTQELLS 219
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 59.4 bits (144), Expect = 4e-09
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
+ LSGG+R+R++ A L+ +P +L+ DE T+ LD S + ++R MRE+ R +TV+
Sbjct: 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVII 647
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
H+ S+ + D+II+L + A G + LA
Sbjct: 648 IAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 59.0 bits (143), Expect = 4e-09
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE++R+ A +L +P L L DEPT LD +A + + E +++ T H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 232 PSSELI-DMFDKIILLADSRTAFIGSKDAALA-FLES 266
P E+I D+ DK I L + G+ D +A F+E
Sbjct: 229 P--EVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEG 263
Score = 36.7 bits (85), Expect = 0.037
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LS GER R++ A L+ +P +++ DEPT +D
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 55.7 bits (135), Expect = 4e-09
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL---IRMMRELTS 219
S SI + + LSGG+R+RL A L +P +L+ DEP + LD L I ++
Sbjct: 89 SGSIAENI-LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA--- 144
Query: 220 QRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
T + H+P E + D+I++L D R
Sbjct: 145 -AGATRIVIAHRP--ETLASADRILVLEDGR 172
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 57.1 bits (138), Expect = 4e-09
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 86 DGDIRVNGKPVE--GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G + + GK + G R ++Q+ P LTV E++ +A+ ++ + +R A+
Sbjct: 39 SGGVILEGKQITEPGPDRMV---VFQNYSLLPWLTVRENIA-LAVDRVLPDLSKSERRAI 94
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ + +GL + R G LSGG ++R++ A L P +LL DEP LD
Sbjct: 95 VEEHIALVGLTEAADKRPGQ--------LSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
+ + L + ++ + + TVL H L+ + D++++L + A IG
Sbjct: 147 ALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALL-LSDRVVMLTNGPAANIG 197
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 56.7 bits (138), Expect = 5e-09
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 28/150 (18%)
Query: 87 GDIRVNGKPVEGK-----FRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G IR +G+ + G R+ G++ + +F P LTV E+L + R + R
Sbjct: 55 GSIRFDGRDITGLPPHERARAGIGYVPEGRRIF-PELTVEENL-LLGAYARRRAKRK-AR 111
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ + L L + G+ LSGGE++ L+ A L++ P LLL DEP+
Sbjct: 112 LERVYELFPRLKER--RKQLAGT--------LSGGEQQMLAIARALMSRPKLLLLDEPSE 161
Query: 201 GLDSFSASKLI----RMMRELTSQRKKTVL 226
GL A K++ +REL T+L
Sbjct: 162 GL----APKIVEEIFEAIREL-RDEGVTIL 186
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 56.5 bits (137), Expect = 6e-09
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 22/172 (12%)
Query: 87 GDIRVNGKPVE-------GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
G I VNG + R G ++Q P TVYE++ L + + + +
Sbjct: 57 GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL-PLRVIGKPPREIR 115
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
R ++ +L +GL + LSGGE++R++ A ++ PA+LL DEPT
Sbjct: 116 R--RVSEVLDLVGLKHKARA--------LPSQLSGGEQQRVAIARAIVNQPAVLLADEPT 165
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK-IILLADSR 250
LD + +++R+ E+ ++ TVL H EL++ ++ L D R
Sbjct: 166 GNLDPDLSWEIMRLFEEI-NRLGTTVLMATH--DLELVNRMRHRVLALEDGR 214
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 57.1 bits (138), Expect = 8e-09
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 24/151 (15%)
Query: 87 GDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G ++V G+ V + + G++ +H+ + V E+L F+A + + QR+
Sbjct: 57 GSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEE 116
Query: 144 INSLLIEL-GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
+IEL GL QH +IG LS G R+R+ A L+ DP +L+ DEPTTGL
Sbjct: 117 ----MIELVGLRPEQHKKIGQ--------LSKGYRQRVGLAQALIHDPKVLILDEPTTGL 164
Query: 203 DS---FSASKLIRMMRELTSQRKKTVLCTIH 230
D +I+ + + KT++ + H
Sbjct: 165 DPNQLVEIRNVIKNI-----GKDKTIILSTH 190
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 56.4 bits (136), Expect = 8e-09
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVY 120
S L+R F ++ +I C I GDI NG+ + R G ++Q P ++Y
Sbjct: 46 STLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIY 104
Query: 121 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180
E++ + + ++ K I + L L + R+ S+++ LSGG+++RL
Sbjct: 105 ENVAYGPRIHGEKNKKTLDTI--VEKSLKGAALWDEVKDRLHDSALS----LSGGQQQRL 158
Query: 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
A L +P ++L DEP + LD + +K+ ++ +L +++ TV+ H
Sbjct: 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL--KKEYTVIIVTH 206
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 56.6 bits (137), Expect = 1e-08
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 42/181 (23%)
Query: 86 DGDIRVNGKPVEG------KFRSACGFMYQH---DLFSPSLTVYEHLYFMAL-LKLD--- 132
G++ + G+P++ + R G ++Q+ LF+P TV E + F L L L
Sbjct: 56 SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKEE 113
Query: 133 --RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV--LSGGERKRLSFATELLT 188
+RVK AL +G K LSGG++KR++ A L
Sbjct: 114 VEKRVKE----AL---------------KAVGMEGFENKPPHHLSGGQKKRVAIAGILAM 154
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILLA 247
P +++ DEPT+GLD AS++++++ +L ++ T++ + H +L+ ++ DK+ +++
Sbjct: 155 KPEIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIISTHD--VDLVPVYADKVYVMS 211
Query: 248 D 248
D
Sbjct: 212 D 212
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 56.2 bits (135), Expect = 1e-08
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 30/216 (13%)
Query: 34 VYAIVNLLVIMDQTASTSKTVILFKNNEEV----PNVDFSELIRLFLSQVIDDCIIDGDI 89
V+ I L + ++ A I NN P+ + L+++I+ I D I
Sbjct: 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKI 67
Query: 90 RVNGKPV----------EGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL---LKLDRRVK 136
+V+GK + K R G ++Q P L++Y+++ + +K R +K
Sbjct: 68 KVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK 127
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
++ L ++GL + R+ S + LSGG+++RL+ A L P +LL D
Sbjct: 128 K-----IVEECLRKVGLWKEVYDRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMD 178
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
EPT+ +D ++ + +++ EL + + ++ H P
Sbjct: 179 EPTSMIDIVNSQAIEKLITEL--KNEIAIVIVSHNP 212
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 55.8 bits (135), Expect = 1e-08
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Query: 86 DGDIRVNGKPVEGKF--RSACGFMYQHDLFSPSLTVYEHLYF-MALLKLDRRVKAYQRIA 142
G I G+ GF++QH +TV++++ F + + R + A
Sbjct: 56 SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA 115
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
++ LL L+ Q + Q LSGG+R+R++ A L +P +LL DEP L
Sbjct: 116 KVHELL---KLV--QLDWLADRYPAQ---LSGGQRQRVALARALAVEPKVLLLDEPFGAL 167
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
D+ +L R +R L + T + H E +++ D+++++ R +G+ D
Sbjct: 168 DAKVRKELRRWLRRLHDELHVTTVFVTHD-QEEALEVADRVVVMNKGRIEQVGTPD 222
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 53.6 bits (130), Expect = 1e-08
Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE+ RL+ A LL +P LLL DEPT LD S L ++E TV+ H
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSH- 125
Query: 232 PSSELIDMF-DKIILL 246
+D KII L
Sbjct: 126 -DRYFLDQVATKIIEL 140
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 57.3 bits (139), Expect = 1e-08
Identities = 50/191 (26%), Positives = 71/191 (37%), Gaps = 34/191 (17%)
Query: 84 IIDGDIRVNGKPVEGKFRSA----CGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAY 138
++ G++ P+ G + G+ QH D P TV E L
Sbjct: 367 LLAGEL----GPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEEL---------SEGFPD 413
Query: 139 QRIALINSLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ + L G Q +G VLSGGE+ RL A LL P LLL DE
Sbjct: 414 GDEQEVRAYLGRFGFTGEDQEKPVG--------VLSGGEKARLLLAKLLLQPPNLLLLDE 465
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSRTAFIGS 256
PT LD S + + E + TVL H +D + +I L+ D F G
Sbjct: 466 PTNHLDIES----LEALEEALLDFEGTVLLVSHDR--YFLDRVATRIWLVEDKVEEFEGG 519
Query: 257 KDAALAFLESQ 267
+ L + +
Sbjct: 520 YEDYLEQKKER 530
Score = 51.1 bits (123), Expect = 1e-06
Identities = 37/174 (21%), Positives = 59/174 (33%), Gaps = 31/174 (17%)
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
+ A L+ LG + + S LSGG R+R++ A LL +P LLL D
Sbjct: 128 GWTLEARAEEALLGLGF-PDEDRPVSS--------LSGGWRRRVALARALLEEPDLLLLD 178
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS------- 249
EPT LD S L ++ TV+ H +D IL D
Sbjct: 179 EPTNHLDLESIEWLEDYLKR----YPGTVIVVSH--DRYFLDNVATHILELDRGKLTPYK 232
Query: 250 --RTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKR 301
++++ K L + Y + ++ + K+
Sbjct: 233 GNYSSYLEQKAERLRQEAAA-------YEKQQKELAKEQEWIRRGKAAASKAKK 279
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 55.8 bits (135), Expect = 1e-08
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 87 GDIRVNGKPV----EGKFRSACGFMYQH-DLFSPSLTVYEHLYFM-ALLKLDR---RVKA 137
G+I ++G+ + + R G++ Q LF P +TV E++ + LLK + R +A
Sbjct: 56 GEIFIDGEDIREQDPVELRRKIGYVIQQIGLF-PHMTVEENIALVPKLLKWPKEKIRERA 114
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ +AL+ L + R LSGG+++R+ A L DP LLL DE
Sbjct: 115 DELLALVG--LDPAEFAD----RYPHE-------LSGGQQQRVGVARALAADPPLLLMDE 161
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257
P LD + +L + L + KT++ H E + D+I ++ + +G+
Sbjct: 162 PFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD-IDEAFRLADRIAIMKNGEIVQVGTP 220
Query: 258 DAALA 262
D L
Sbjct: 221 DEILR 225
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 56.0 bits (135), Expect = 1e-08
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 87 GDIRVNGKPVEGK----FRSACGFMYQH---DLFSPSLTVYEHLYFMAL-LKLDRRVKAY 138
G + + G+P+ + R G ++Q+ +FSP TV + + F + L LD A+
Sbjct: 59 GSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP--TVEQDIAFGPINLGLDEETVAH 116
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ ++S L LGL R+ LSGGE+KR++ A + +P +L+ DEP
Sbjct: 117 R----VSSALHMLGL-EELRDRVPHH-------LSGGEKKRVAIAGVIAMEPQVLVLDEP 164
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI-DMFDKIILLADSRTAFIGSK 257
T GLD +LI + +L TV+ + HQ +L+ +M D I ++ R +
Sbjct: 165 TAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ--LDLVPEMADYIYVMDKGR--IVAYG 220
Query: 258 DAALAFLE 265
FL+
Sbjct: 221 TVEEIFLQ 228
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 54.8 bits (132), Expect = 2e-08
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 21/149 (14%)
Query: 87 GDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G + +NG P+ ++ +L+V E+L F D
Sbjct: 55 GRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSD---------EQ 105
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ L +GL + + LS G+++R++ A LL+ L + DEPTT LD
Sbjct: 106 VEEALARVGLNGFEDRPVAQ--------LSAGQQRRVALARLLLSGRPLWILDEPTTALD 157
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQP 232
++ M R V+ T HQ
Sbjct: 158 KAGVARFAEAMAGHC-ARGGMVVLTTHQD 185
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 55.8 bits (135), Expect = 2e-08
Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
G+I NG P+ + ++ G++ + P +TV + L ++A LK + + +++ +
Sbjct: 57 GEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL---QA 113
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
L L ++ + +I LS G ++++ F + ++ +P LL+ DEP +GLD +
Sbjct: 114 WLERLEIVGKKTKKIKE--------LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVN 165
Query: 207 ASKLIRMMRELTSQRKKTVLCTIHQPS--SELIDMFDKIILLADSRTAFIG 255
L + EL + T++ + H+ EL D++++L +T G
Sbjct: 166 VELLKDAIFEL-KEEGATIIFSSHRMEHVEELC---DRLLMLKKGQTVLYG 212
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 55.7 bits (134), Expect = 2e-08
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 16/115 (13%)
Query: 120 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR 179
Y H+ ++ RR K R ++ + L + ++ +H +IG LSGG++KR
Sbjct: 106 YGHMGWL------RRAKKRDR-QIVTAALARVDMVEFRHRQIGE--------LSGGQKKR 150
Query: 180 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234
+ A + ++L DEP TG+D + +++I ++REL + KT+L + H S
Sbjct: 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGS 204
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 57.7 bits (139), Expect = 2e-08
Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 19/168 (11%)
Query: 87 GDIRVNGKPVEGKF---RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G + V GK +E R + G QH++ LTV EH+ F A LK ++++ L
Sbjct: 985 GTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK----GRSWEEAQL 1040
Query: 144 -INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
+ ++L + GL + ++ LSGG +++LS A + D +++ DEPT+G+
Sbjct: 1041 EMEAMLEDTGLHHKRNEEAQD--------LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGV 1092
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
D +S + ++ + S R ++ T H ++L+ D+I +++ R
Sbjct: 1093 DPYSRRSIWDLLLKYRSGR-TIIMSTHHMDEADLLG--DRIAIISQGR 1137
Score = 50.0 bits (119), Expect = 4e-06
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 14/151 (9%)
Query: 81 DDCIIDGDIRVNGKPVE---GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKA 137
D + GD V GK + G+ Q D LT EHLY A L R V A
Sbjct: 1988 DTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL---RGVPA 2044
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ + N + LGL G+ SGG +++LS A L+ P L+L DE
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT--------YSGGNKRKLSTAIALIGCPPLVLLDE 2096
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
PTTG+D + L + + + + VL +
Sbjct: 2097 PTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 55.6 bits (134), Expect = 2e-08
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 159 TRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
R S + + + LSGGER+R+ A L +P LLL DEPT LD + + + ++RE
Sbjct: 123 ARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182
Query: 217 LTSQRKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIG 255
L + TV+ +H + L + D +++L R G
Sbjct: 183 LAATG-VTVVAALHDLN--LAASYCDHVVVLDGGRVVAAG 219
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 56.0 bits (135), Expect = 2e-08
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 85 IDGDIRVNGKPVE--GKFRSACGFMYQHDLFSPSLTVYEHL-YFMALLKLD---RRVKAY 138
IDG+ + PVE R G ++Q P +T+ ++ LL R+ KA
Sbjct: 52 IDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKAL 111
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ + L+ GL +H LSGG ++R+ A L +P +LL DE
Sbjct: 112 ELLKLV-------GLEEYEHRYPDE--------LSGGMQQRVGLARALAAEPDILLMDEA 156
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ LD + +++L + +KT++ H E I + D+I+++ +G+ D
Sbjct: 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHD-LDEAIRIGDRIVIMKAGEIVQVGTPD 215
Query: 259 AAL 261
L
Sbjct: 216 EIL 218
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 55.7 bits (134), Expect = 3e-08
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 12/149 (8%)
Query: 84 IIDG-DIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
I+DG D+ K R G ++QH S TV+ ++ L + + +++
Sbjct: 63 IVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKV- 121
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
LL +GL + + + LSGG+++R++ A L ++P +LLCDE T+ L
Sbjct: 122 --TELLALVGLGDKHDSYPSN--------LSGGQKQRVAIARALASNPKVLLCDEATSAL 171
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
D + ++ +++E+ + T+L H+
Sbjct: 172 DPATTQSILELLKEINRRLGLTILLITHE 200
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 53.9 bits (130), Expect = 3e-08
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 19/149 (12%)
Query: 87 GDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G++R NG + + ++ P L+ E+L+F A + +
Sbjct: 55 GEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIED---- 110
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
L +GL + LS G+++RL+ A L+ L + DEPTT LD
Sbjct: 111 ---ALAAVGLTGFEDLPAAQ--------LSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQP 232
+ L ++R R VL T HQ
Sbjct: 160 KAGVALLAGLLRAHL-ARGGIVLLTTHQD 187
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 54.2 bits (131), Expect = 3e-08
Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 84 IIDGDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL--------D 132
G I + G+ V K R ++Q+ P +TVY+++ F LKL D
Sbjct: 52 PTSGRIYIGGRDVTDLPPKDRDI-AMVFQNYALYPHMTVYDNIAFG--LKLRKVPKDEID 108
Query: 133 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192
RV+ + I LL + + LSGG+R+R++ ++ +P +
Sbjct: 109 ERVREVAELLQIEHLL-------DRKPK----------QLSGGQRQRVALGRAIVREPKV 151
Query: 193 LLCDEPTTGLDSFSASKLIRMMR----ELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
L DEP + LD +KL MR L + T + H E + M D+I ++ D
Sbjct: 152 FLMDEPLSNLD----AKLRVQMRAELKRLQQRLGTTTIYVTHD-QVEAMTMADRIAVMND 206
Query: 249 SRTAFIG 255
+ IG
Sbjct: 207 GQIQQIG 213
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 55.9 bits (135), Expect = 4e-08
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGGER+R+ A LLT P LL+ DEPTT LD +++++++REL
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLREL 202
Score = 40.8 bits (96), Expect = 0.002
Identities = 16/50 (32%), Positives = 34/50 (68%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 222
SGG+R+R++ A L+ P+L++ DEPT+ LD ++++ +++ L + +
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ 476
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 55.4 bits (134), Expect = 4e-08
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 20/156 (12%)
Query: 105 GFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 163
G ++Q + LF P+LTV +++ + LK +R + + + LL +GL S+ G
Sbjct: 79 GIVFQSYALF-PNLTVADNIAYG--LK-NRGMGRAEVAERVAELLDLVGLPGSERKYPGQ 134
Query: 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK- 222
LSGG+++R++ A L T P LLL DEP + LD+ L +R+L QR+
Sbjct: 135 --------LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL--QRRL 184
Query: 223 --KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
T++ T Q E + M D+I+++ +G+
Sbjct: 185 GVTTIMVTHDQ--EEALSMADRIVVMNHGVIEQVGT 218
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 53.2 bits (128), Expect = 4e-08
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
LSGGE+KR++ A + P +LL DEPT GLD +++ ++R L ++ V+ T
Sbjct: 128 LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVIST 184
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 55.6 bits (135), Expect = 5e-08
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE++RL A LL D LLL DEPT GLD+ + +++ ++ E + KTVL H+
Sbjct: 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHR 533
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
+ ++ FD+I ++ + + G+ LA
Sbjct: 534 LT--GLEQFDRICVMDNGQIIEQGTHQELLA 562
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 53.9 bits (129), Expect = 6e-08
Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 25/174 (14%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVY 120
S +RLF ++ +I ++G+IR++G+ + K R G ++Q P +++
Sbjct: 43 STFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPK-SIF 101
Query: 121 EHLYFMALLKLDRRVKAYQRIALINSLLIE----LGLMNSQHTRIGSSSITQKVVLSGGE 176
E++ + RV + A I + E L + ++ S+ LSGG+
Sbjct: 102 ENVAY------GLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFA----LSGGQ 151
Query: 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
++RL A + P++LL DEP + LD S +K+ ++ EL ++ T++ H
Sbjct: 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL--KKDYTIVIVTH 203
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 53.9 bits (130), Expect = 6e-08
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+R+R A L D ++L DEPTT LD +L+R+MREL + + KTV+ +H
Sbjct: 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL-NTQGKTVVTVLH 196
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 53.1 bits (128), Expect = 7e-08
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 87 GDIRVNGKP---VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G++ G+P V + A ++ LT E+L+F +R A
Sbjct: 57 GEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFW------QRFHGSGNAAT 110
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
I L ++GL + +G LS G+++R++ A L+ L + DEP T LD
Sbjct: 111 IWEALAQVGLAGLEDLPVGQ--------LSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234
+ L +M + VL T HQP
Sbjct: 163 KEGVALLTALMAAHA-AQGGIVLLTTHQPLP 192
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 53.3 bits (128), Expect = 7e-08
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+R+ A L T P++LL DEP TGLD + L + EL + +L T H
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL-AGAGTAILMTTHD 172
Query: 232 PSSELIDMFDKIILL 246
++ + D+++LL
Sbjct: 173 -LAQAMATCDRVVLL 186
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 54.0 bits (130), Expect = 9e-08
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 34/163 (20%)
Query: 105 GFMYQHDLFSPSLTVYEHLYF-MALLKLDR-----RVKAYQRIALINSLLIELGLMNSQH 158
++Q P +TV E++ F + + K+ R RV R L++L
Sbjct: 45 NMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALR-------LVQLEEF---- 93
Query: 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMREL 217
Q LSGG+++R++ A L+ P +LL DEP + LD KL +M EL
Sbjct: 94 ---ADRKPHQ---LSGGQQQRVALARALVFKPKILLLDEPLSALD----KKLRDQMQLEL 143
Query: 218 -TSQRK---KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
T Q + V T Q E + M D+I ++ + A IG+
Sbjct: 144 KTIQEQLGITFVFVTHDQ--EEAMTMSDRIAIMRKGKIAQIGT 184
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 52.9 bits (127), Expect = 1e-07
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 31/161 (19%)
Query: 86 DGDIRVNGKPV-------EGKFRSA-CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKA 137
G++ + G+P+ K R+ GF++Q + P+L E++ ALL+ + ++
Sbjct: 64 SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS 123
Query: 138 YQRIALINSLLIELGL------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
+LL +LGL + +Q LSGGE++R++ A P
Sbjct: 124 RNGAK---ALLEQLGLGKRLDHLPAQ--------------LSGGEQQRVALARAFNGRPD 166
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
+L DEPT LD + K+ ++ L + T++ H
Sbjct: 167 VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 53.0 bits (127), Expect = 1e-07
Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 31/213 (14%)
Query: 30 GSVQVYAIVNL-------LVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFL-SQVID 81
G V+V VNL +M + S T++ F+ LI L+ ++V
Sbjct: 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRV----------FNRLIELYPEARVSG 63
Query: 82 DCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL-LKLDRRVKAYQR 140
+ +DG +E + R F + + P+L+++E++ AL LKL+R VK+ +
Sbjct: 64 EVYLDGQDIFKMDVIELRRRVQMVFQIPNPI--PNLSIFENV---ALGLKLNRLVKSKKE 118
Query: 141 I-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
+ + L + L + R+ + + LSGG+++RL A L P +LL DEPT
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGK----LSGGQQQRLCIARALAFQPEVLLADEPT 174
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
LD + +K+ + EL ++ T++ H P
Sbjct: 175 ANLDPENTAKIESLFLEL--KKDMTIVLVTHFP 205
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 53.0 bits (128), Expect = 1e-07
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 24/132 (18%)
Query: 117 LTVYE-HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
+TV E +F + K+ R+++ L ++GL + ++G + T LSGG
Sbjct: 131 MTVEEALEFFENIPKIARKLQT----------LCDVGL---GYIKLGQPATT----LSGG 173
Query: 176 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
E +R+ A EL T L + DEPTTGL KL+ +++ L + TV+ H
Sbjct: 174 EAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHN- 231
Query: 233 SSELIDMFDKII 244
++I D II
Sbjct: 232 -LDVIKCADWII 242
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 54.1 bits (131), Expect = 1e-07
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 27/154 (17%)
Query: 87 GDIRVNGKPVEGKFRSA-------CGFMYQHDLFSPSLTVYEHLYF----MALLKLDRRV 135
G+IRV+GK V +S G ++QH + P+LTV E++ +DRR
Sbjct: 59 GEIRVDGKEVR--IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRR- 115
Query: 136 KAYQRIA-LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
+A RI L + + ++ LS GE++R+ L LL+
Sbjct: 116 QARARIKELSERYGLPVDP----DAKVAD--------LSVGEQQRVEILKALYRGARLLI 163
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
DEPT L A +L ++R L ++ K + T
Sbjct: 164 LDEPTAVLTPQEADELFEILRRLAAEGKTIIFIT 197
Score = 46.4 bits (111), Expect = 3e-05
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG +++L A EL P LL+ +PT GLD + + + EL K +L
Sbjct: 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLI---- 459
Query: 232 PSSELIDMFDKIILLADSRTAFI 254
S +L D+I+ L+D R A I
Sbjct: 460 -SEDL----DEILELSD-RIAVI 476
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 54.0 bits (130), Expect = 1e-07
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 156 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 215
T+IGS LSGG ++++ LLT P +L+ DEPT G+D + ++ +++
Sbjct: 384 GHRTQIGS--------LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA 435
Query: 216 ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254
EL + K ++ + P EL+ + D+I+++++ A I
Sbjct: 436 ELAKKDKGIIIISSEMP--ELLGITDRILVMSNGLVAGI 472
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 52.7 bits (127), Expect = 2e-07
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 85 IDGDIRVNGKPVEGKFRSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRR----VKAY 138
IDG + V K V + + ++Q L +P LT+ E+L +A + +R
Sbjct: 65 IDG-VDVTKKSVAKR-ANLLARVFQDPLAGTAPELTIEENL-ALAESRGKKRGLSSALNE 121
Query: 139 QRIALINSLL--IELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
+R + L + LGL N RIG +LSGG+R+ LS L P +LL D
Sbjct: 122 RRRSSFRERLARLGLGLENRLSDRIG--------LLSGGQRQALSLLMATLHPPKILLLD 173
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
E T LD +A ++ + ++ + K T L H
Sbjct: 174 EHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 52.3 bits (125), Expect = 2e-07
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY-----FMALLKLDRRVKAYQR 140
DG ++V K R+ ++QH +TV E++ + L K + R +A
Sbjct: 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA--- 132
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ + + I+ + V LSGG+++R+S A L +P +LL DEPT+
Sbjct: 133 VKYLAKVGID-----------ERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTS 181
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCT 228
LD +++R+M++L + K V+ T
Sbjct: 182 ALDPELVGEVLRIMQQLAEEGKTMVVVT 209
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 53.0 bits (128), Expect = 2e-07
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 84 IIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEHLYF-MALLKL-----DRR 134
G+I ++G+ V + R ++Q+ P +TVYE++ F + L + D+R
Sbjct: 55 PTSGEILIDGRDVTDLPPEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR 113
Query: 135 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
VK ++ LGL + + + LSGG+R+R++ A L+ P + L
Sbjct: 114 VKEVAKL---------LGLEHLLNRKPLQ--------LSGGQRQRVALARALVRKPKVFL 156
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
DEP + LD+ + +++L + T + H E + + D+I+++
Sbjct: 157 LDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVM 207
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 52.5 bits (126), Expect = 2e-07
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 41/169 (24%)
Query: 80 IDDCIIDGDIRVNGK--------PVEGKFRSACGFMYQH-DLFSPSLTVYEHLYFMALLK 130
ID ++G++ GK PV R G ++Q + F S +Y+++ + ++
Sbjct: 92 IDAARVEGELTFRGKNVYDADVDPV--ALRRRIGMVFQKPNPFPKS--IYDNVAYGLKIQ 147
Query: 131 -----LDRRV-KAYQRIAL---INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLS 181
+D RV ++ +R AL + L GL LSGG+++RL
Sbjct: 148 GYDGDIDERVEESLRRAALWDEVKDQLDSSGL-----------------DLSGGQQQRLC 190
Query: 182 FATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
A + DP ++L DEP + LD + SK+ ++ EL + TV+ H
Sbjct: 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY--TVVIVTH 237
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 52.2 bits (126), Expect = 2e-07
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
LSGG+R+R+ A L +P L++ DEP + LD ++++ ++++L + T L
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYL 164
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 52.3 bits (125), Expect = 2e-07
Identities = 45/195 (23%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 76 LSQVIDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALL 129
++ +I I G++ + G+ + + R G ++Q P ++YE++ + L
Sbjct: 54 MNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRL 112
Query: 130 KLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
VK + + + L + + + + S+++ LSGG+++R+ A L
Sbjct: 113 A---GVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALS----LSGGQQQRVCIARVLAV 165
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC-TIHQPS--SELIDMF--DKI 243
P ++L DEPT+ LD S++++ M+ EL Q ++ ++HQ S S+ F +
Sbjct: 166 KPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225
Query: 244 ILLADSRTAFIGSKD 258
I AD++ F+ K+
Sbjct: 226 IEFADTKQMFLNPKE 240
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 51.4 bits (124), Expect = 2e-07
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 113 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172
F+P LT E++Y L R + ++I I ELG + + +
Sbjct: 95 FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE-FSELG--DFIDLPVKT--------Y 143
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
S G + RL+FA +P +LL DE D+ K R +REL Q K +L + H P
Sbjct: 144 SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVS-HDP 202
Query: 233 SSELIDMFDKIILLADSRTAFIG 255
SS + + D+ ++L + F G
Sbjct: 203 SS-IKRLCDRALVLEKGKIRFDG 224
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 50.5 bits (122), Expect = 3e-07
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG ++++ A L DP +L+ DEPT G+D + +++ R++REL K +L
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI---- 160
Query: 232 PSSELIDMFDKIILLAD 248
SSEL D+++ L D
Sbjct: 161 -SSEL----DELLGLCD 172
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 51.2 bits (123), Expect = 3e-07
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 87 GDIRVNGKPVEG-KFRS---ACGFMYQHDLFSPSLTVYEHLY--FMALLKLDRRVKAYQR 140
G+I ++G+P+ R A F+P T+ H +L KL ++ +A
Sbjct: 45 GEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARA--- 101
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
LI L +GL + + + Q LSGG +R+ A LL +P L+ DEPTT
Sbjct: 102 --LILEALEAVGLPDPE--EVLKKYPFQ---LSGGMLQRVMIALALLLEPPFLIADEPTT 154
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LD + +++++++REL +L H
Sbjct: 155 DLDVVNQARVLKLLRELRQLFGTGILLITH 184
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 52.3 bits (126), Expect = 3e-07
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL--INSLLIELGLMNSQHTRIG 162
G+++Q P TV +L + R + Q +AL I LL R
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGM--WKSMRAQFDQLVALLGIEHLL----------DRYP 126
Query: 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 222
+ LSGGE++R++ LLT P LLL DEP LD +++ + L +
Sbjct: 127 GT-------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN 179
Query: 223 KTVLCTIHQPSSELIDMFDKIILLADSR 250
+L H E++ + D++++L + +
Sbjct: 180 IPILYVSHSL-DEVLRLADRVVVLENGK 206
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 51.5 bits (124), Expect = 3e-07
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 31/165 (18%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSP-SLTV 119
S L+R ++ ++ I+G + +G+ + K R G ++Q +P +++
Sbjct: 41 STLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQK--PNPFPMSI 98
Query: 120 YEHLYFMALLK-------LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172
Y+++ + L LD V+ L + L + R+ S++ L
Sbjct: 99 YDNIAYGPRLHGIKDKKELDEIVEE---------SLKKAALWDEVKDRLHDSALG----L 145
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
SGG+++RL A L +P +LL DEPT+ LD + K+ +++EL
Sbjct: 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL 190
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 53.0 bits (128), Expect = 3e-07
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 22/114 (19%)
Query: 117 LTVYE-HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
+TV E +F A+ K+ R+++ L+++GL + ++G + T LSGG
Sbjct: 784 MTVEEALEFFEAIPKIARKLQ----------TLVDVGL---GYIKLGQPATT----LSGG 826
Query: 176 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
E +R+ A EL T L + DEPTTGL KL+ ++ L + TV+
Sbjct: 827 EAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVI 879
Score = 33.3 bits (77), Expect = 0.45
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 18/82 (21%)
Query: 172 LSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK--TVL 226
LSGGE +R+ AT++ LT L + DEP+ GL +LI ++ L R TV+
Sbjct: 482 LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNERLIETLKRL---RDLGNTVI 537
Query: 227 CTIHQPSSELIDMFDKIILLAD 248
H I AD
Sbjct: 538 VVEHDE---------DTIRAAD 550
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 52.3 bits (125), Expect = 4e-07
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 19/159 (11%)
Query: 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164
++Q+ P L V +++ F L+ + KA I + + L +
Sbjct: 82 ALLFQNYALFPHLKVEDNVAFG--LRAQKMPKA-----DIAERVAD-ALKLVGLGDAAAH 133
Query: 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS----FSASKLIRMMRELTSQ 220
Q LSGG ++R++ A + +P +LL DEP + LD+ ++ + EL
Sbjct: 134 LPAQ---LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 221 RKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 259
T+LC H L + DK ++ D R A G A
Sbjct: 191 ---TILCVTHDQDDALT-LADKAGIMKDGRLAAHGEPQA 225
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 50.6 bits (121), Expect = 4e-07
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
+ R++ P + G ++Q L P L+V ++L L L +K R N+
Sbjct: 65 NEQRLDMLPAA---QRQIGILFQDALLFPHLSVGQNL----LFALPATLKGNARRNAANA 117
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
L GL + H LSGG+R R++ LL P LL DEP + LD
Sbjct: 118 ALERSGLDGAFHQ--------DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 51.5 bits (124), Expect = 4e-07
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 22/141 (15%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A+ L +P +++ DE T+ LD ++ ++M +L RKKT++ H
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITH- 201
Query: 232 PSSELIDM-----FDKIILLADSRTAFIGSKDAALA---FLESQGYPCPYGYNPADFLIK 283
DM DK+I+ ++ + G L LE P+ Y + +K
Sbjct: 202 ------DMDEAILADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSK-KLK 254
Query: 284 SLAVTTN-DELSSRRRLKRIC 303
+ T N +EL +++IC
Sbjct: 255 GIDPTYNEEEL-----IEQIC 270
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 51.2 bits (123), Expect = 5e-07
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L+ P LLL DEP LD+ + ++ ++ L Q TVL H
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Query: 232 PSSELIDMFDKIILLADSR 250
SE + M D+++L+ + +
Sbjct: 194 -VSEAVAMADRVLLIEEGK 211
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 51.6 bits (124), Expect = 5e-07
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LS G+R R A LL P +L DEPT GLD + + + ++E +R+ TVL T H
Sbjct: 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 52.3 bits (126), Expect = 5e-07
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+R+R+ A L +P LL+ DEPTT LD ++++ +++EL ++ +L H
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216
Score = 43.4 bits (103), Expect = 3e-04
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 33/164 (20%)
Query: 71 LIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFM--YQHDL----------FSPSLT 118
L+RL SQ G+IR +G+ ++G R M + + SP +T
Sbjct: 333 LLRLIPSQ--------GEIRFDGQDIDGLSRKE---MRPLRRRMQVVFQDPYGSLSPRMT 381
Query: 119 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178
V + L + ++ A +R + L E+GL + R SGG+R+
Sbjct: 382 V-GQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHE-------FSGGQRQ 433
Query: 179 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 222
R++ A L+ P L+L DEPT+ LD ++++ ++R+L Q+K
Sbjct: 434 RIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL--QQK 475
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 50.8 bits (121), Expect = 6e-07
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 35/157 (22%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL------------LKLDRR 134
DIR K R+ G+++Q L+V E++ AL +++
Sbjct: 79 RDIR--------KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQK 130
Query: 135 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
+A Q L +G+++ H R+ + LSGG+++R++ A L+ ++L
Sbjct: 131 QRALQA-------LTRVGMVHFAHQRVST--------LSGGQQQRVAIARALMQQAKVIL 175
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
DEP LD SA ++ +R++ TV+ T+HQ
Sbjct: 176 ADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 51.7 bits (124), Expect = 7e-07
Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 43/197 (21%)
Query: 82 DCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAY--- 138
D G+IR+NGK + + SP V + MA + RR +
Sbjct: 313 DKRAGGEIRLNGKDISPR--------------SPLDAVKKG---MAYITESRRDNGFFPN 355
Query: 139 ----QRIALINSLLI-----ELGLMNSQHTR-----------IGSSSITQKVV-LSGGER 177
Q +A+ SL +GL + + + S+ Q + LSGG +
Sbjct: 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQ 415
Query: 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237
+++ + L P +++ DEPT G+D + +++ ++MR+L K ++ + P E+I
Sbjct: 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP--EII 473
Query: 238 DMFDKIILLADSRTAFI 254
+ D+I + + R I
Sbjct: 474 TVCDRIAVFCEGRLTQI 490
Score = 39.8 bits (93), Expect = 0.004
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 24/153 (15%)
Query: 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRV---------KAYQRIALINSLLIELGLMN 155
G +YQ LTV E+LY L ++V + R A+ +L+ +GL
Sbjct: 83 GIIYQELSVIDELTVLENLYIGRHLT--KKVCGVNIIDWREMRVRAAM---MLLRVGLKV 137
Query: 156 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 215
++ + SI+ K + L A L+ D +++ DEPT+ L + L +M
Sbjct: 138 DLDEKVANLSISHK--------QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMN 189
Query: 216 ELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
+L + V I +E+ + D+ ++ D
Sbjct: 190 QLRKEGTAIVY--ISHKLAEIRRICDRYTVMKD 220
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 50.7 bits (121), Expect = 7e-07
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
TQ + LSGG+++RL A L T+P +LL DEPT+ LD S K+ ++ +L + K T++
Sbjct: 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL--KEKYTIV 208
Query: 227 CTIH 230
H
Sbjct: 209 IVTH 212
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 49.1 bits (118), Expect = 7e-07
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 14/83 (16%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI- 229
VLSGGE++RL+FA LL P + DE T+ LD S +L ++++EL T+
Sbjct: 91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--------GITVI 142
Query: 230 ---HQPSSELIDMFDKIILLADS 249
H+PS L D+++ L
Sbjct: 143 SVGHRPS--LWKFHDRVLDLDGE 163
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 50.2 bits (121), Expect = 7e-07
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 24/149 (16%)
Query: 86 DGDIRVNGKPVEG-----KFRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
G IR++G+ + + R+ ++ Q ++F P LTV E+L L L + +
Sbjct: 54 SGSIRLDGEDITKLPPHERARAGIAYVPQGREIF-PRLTVEENL----LTGLAALPRRSR 108
Query: 140 RI-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+I I L L M R G LSGG++++L+ A L+T P LLL DEP
Sbjct: 109 KIPDEIYELFPVLKEM--LGRRGG--------DLSGGQQQQLAIARALVTRPKLLLLDEP 158
Query: 199 TTGLDSFSASKLI-RMMRELTSQRKKTVL 226
T G+ S K I R++R L ++ +L
Sbjct: 159 TEGIQP-SIIKDIGRVIRRLRAEGGMAIL 186
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 50.3 bits (121), Expect = 8e-07
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 86 DGDIRVNGKPVEG----KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G I ++G + RS G + Q LFS T+ E++ D V +
Sbjct: 57 KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG--TIMENIRLGRPNATDEEVIEAAK 114
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
A + +++L N T +G + LS GER+ L+ A +L DP +L+ DE T+
Sbjct: 115 EAGAHDFIMKL--PNGYDTVLGENGGN----LSQGERQLLAIARAMLRDPKILILDEATS 168
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
+D+ + + + +L + +T + H+ S+ I DKI++L D +
Sbjct: 169 NIDTETEKLIQEALEKL--MKGRTSIIIAHRLST--IKNADKILVLDDGK 214
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 50.4 bits (121), Expect = 9e-07
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 171 VLSGGERKRLSFA------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224
LSGGE++R+ A + L DEPT+ LD +R+ R+L +
Sbjct: 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREG-GA 193
Query: 225 VLCTIHQPSSELIDMF-DKIILLADSRTAFIGSKDAAL 261
VL +H + L + D+I+LL R GS L
Sbjct: 194 VLAVLHDLN--LAAQYADRIVLLHQGRVIASGSPQDVL 229
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 50.5 bits (120), Expect = 9e-07
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 15/169 (8%)
Query: 87 GDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
GD+ + G+ + +FR G ++Q P +++ +++ +A ++ + V +
Sbjct: 81 GDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNV--LAGVRAHKLVPRKEFR 137
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
+ + L E+GL ++ R+ S LSGG+++ L A L +P +LL DEPT+
Sbjct: 138 GVAQARLTEVGLWDAVKDRLSDSPFR----LSGGQQQLLCLARTLAVNPEVLLLDEPTSA 193
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
LD + K+ +R L + TV+ H ++ + D+ L D R
Sbjct: 194 LDPTTTEKIEEFIRSLAD--RLTVIIVTHN-LAQAARISDRAALFFDGR 239
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 50.1 bits (120), Expect = 9e-07
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 29/165 (17%)
Query: 79 VIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVYEHLYFMALL--- 129
+I I+G++ ++G+ + R G ++Q P +++Y+++ +
Sbjct: 55 LIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI 113
Query: 130 ----KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185
KLD V+ + A L + R+ S++ LSGG+++RL A
Sbjct: 114 KDKKKLDEIVEKSLKGA---------ALWDEVKDRLKKSALG----LSGGQQQRLCIARA 160
Query: 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
L +P +LL DEPT+ LD S K+ +++EL ++ T++ H
Sbjct: 161 LAVEPEVLLMDEPTSALDPISTLKIEELIQEL--KKDYTIVIVTH 203
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 50.2 bits (121), Expect = 1e-06
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 172 LSGGERKRLSFA------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
LSGGE++R+ A E P LL DEPT+ LD ++R+ R+L +R V
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194
Query: 226 LCTIHQPSSELID-----MF-DKIILLADSRTAFIGSKDAAL 261
+ +H D + D+I+LL R G+ L
Sbjct: 195 IVVLH-------DLNLAARYADRIVLLHQGRLVADGTPAEVL 229
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 49.1 bits (118), Expect = 1e-06
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 87 GDIRVNGKPVE-GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
G I+++G ++ AC ++ + P+LTV E+L F A + + +
Sbjct: 57 GTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAV- 115
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
GL H G LS G+++R++ A L+++ + + DEPT LD+
Sbjct: 116 ------GLAPLAHLPFG--------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161
Query: 206 SASKLIRMMRE 216
+ + ++R
Sbjct: 162 AVALFAELIRA 172
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 48.7 bits (116), Expect = 1e-06
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
Q + LSGGE +R++ A LL + L DEP+ LD R +R L+ + KKT L
Sbjct: 68 QYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127
Query: 228 TIH 230
H
Sbjct: 128 VEH 130
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 51.2 bits (123), Expect = 1e-06
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 21/108 (19%)
Query: 117 LTVYE-HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
+TV E + +F A+ + R+++ L ++GL + R+G + T LSGG
Sbjct: 791 MTVEEAYEFFEAVPSISRKLQ----------TLCDVGL---GYIRLGQPATT----LSGG 833
Query: 176 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
E +R+ A EL T L + DEPTTGL KL+ +++ L +
Sbjct: 834 EAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK 881
Score = 35.0 bits (81), Expect = 0.13
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 172 LSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGGE +R+ AT++ LT L + DEP+ GL +LI ++ L
Sbjct: 489 LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNRRLINTLKRL 536
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 50.6 bits (121), Expect = 2e-06
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGER+R+ A L +LL DEPT LD + + ++R L KT + IH
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIH- 197
Query: 232 PSSELIDMF-DKIILLADSRTAFIGSKDAAL 261
+L + D+++LLAD R G L
Sbjct: 198 -DLDLAARYCDELVLLADGRVRAAGPPADVL 227
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 48.1 bits (115), Expect = 2e-06
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 172 LSGGERKRLSFATEL---LTDPA-LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
LSGGE++ + A L P L + DE GLD L + E + V+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEH-LVKGAQVIV 136
Query: 228 TIHQPSSELIDMFDKII 244
H P EL ++ DK+I
Sbjct: 137 ITHLP--ELAELADKLI 151
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 51.2 bits (122), Expect = 2e-06
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 116 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
++++YE++ F VK + A I+ IE L N T +G + LSGG
Sbjct: 1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEF-IE-SLPNKYDTNVGPYGKS----LSGG 1362
Query: 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 235
+++R++ A LL +P +LL DE T+ LDS S + + + ++ + KT++ H+ +S
Sbjct: 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS- 1421
Query: 236 LIDMFDKIILLADSRTAFIGSKDAALAFLESQG 268
I DKI++ + D +F+++ G
Sbjct: 1422 -IKRSDKIVVF--------NNPDRTGSFVQAHG 1445
Score = 38.5 bits (89), Expect = 0.012
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R+S A ++ +P +L+ DE T+ LD+ S + + + L + + H+
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 232 PSS 234
S+
Sbjct: 640 LST 642
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 49.3 bits (118), Expect = 2e-06
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 27/159 (16%)
Query: 87 GDIRVNG-------------KPVEGK----FRSACGFMYQHDLFSPSLTVYEHLYFMALL 129
G IRVNG KP + + R+ G ++QH +TV E++ +
Sbjct: 61 GSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH 120
Query: 130 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189
L V + I L ++G+ LSGG+++R++ A L +
Sbjct: 121 VL--GVSKAEAIERAEKYLAKVGIAEKADA--------YPAHLSGGQQQRVAIARALAME 170
Query: 190 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
P ++L DEPT+ LD +++++M++L + + V+ T
Sbjct: 171 PEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVT 209
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 50.5 bits (121), Expect = 2e-06
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
QR+ LL LGL + + LSGG+++R+S A L+ ++L DEP
Sbjct: 120 QRLLRAQELLQRLGLEDRVEYQPSQ--------LSGGQQQRVSIARALMNGGQVILADEP 171
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
T LDS S +++ ++ +L R TV+ H P
Sbjct: 172 TGALDSHSGEEVMAILHQL-RDRGHTVIIVTHDP 204
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 49.7 bits (119), Expect = 2e-06
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 87 GDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR--I 141
G IR +G V + R GF++QH +TV++++ F L L RR +R
Sbjct: 57 GHIRFHGTDVSRLHARDRKV-GFVFQHYALFRHMTVFDNIAF-GLTVLPRR----ERPNA 110
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
A I + + +L M Q + Q LSGG+++R++ A L +P +LL DEP
Sbjct: 111 AAIKAKVTQLLEM-VQLAHLADRYPAQ---LSGGQKQRVALARALAVEPQILLLDEPFGA 166
Query: 202 LDSFSASKLIRMMRELTSQRKKT-VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
LD+ +L R +R+L + K T V T Q E +++ D++++++ G+ D
Sbjct: 167 LDAQVRKELRRWLRQLHEELKFTSVFVTHDQ--EEAMEVADRVVVMSQGNIEQAGTPD 222
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 48.9 bits (116), Expect = 3e-06
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++RL A L TDP +LL DEPT+ LD + + + ++ +L + K T+L H
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL--KNKVTILIVTH 218
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 48.8 bits (116), Expect = 3e-06
Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 24/173 (13%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVY 120
S IR ++ +I +C I+G + + G+ + R G ++Q P +++Y
Sbjct: 52 STFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIY 110
Query: 121 EHLYFMALLKLDRRVKAYQRIAL---INSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177
+++ + R+ + L + + L L + R+ S +++ LSGG++
Sbjct: 111 DNVAY------GPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALS----LSGGQQ 160
Query: 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+RL A L P ++L DEPT+ LD S +++ ++ L ++ T++ H
Sbjct: 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL--KKDYTIVIVTH 211
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 48.3 bits (115), Expect = 4e-06
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L P ++L DE T+ LD +++ ++R L S+ T+L H+
Sbjct: 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 48.7 bits (116), Expect = 5e-06
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187
L +L R L+ L + L + + R+ +++ LSGG+++RL A L
Sbjct: 161 LARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG----LSGGQQQRLCIARCLA 216
Query: 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
DP ++L DEP + LD + SK+ ++ EL + TV+ H
Sbjct: 217 VDPEVILMDEPASALDPIATSKIEDLIEELAEEY--TVVVVTH 257
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 48.0 bits (115), Expect = 5e-06
Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 54/228 (23%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSAC--------GFMYQHDLFSPSLTVY 120
S L+R ++++I+ G + ++G+ + R ++Q P TV
Sbjct: 64 STLLRC-INRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVL 120
Query: 121 EHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176
E++ F + + +R +A + + L+ GL +H LSGG
Sbjct: 121 ENVAFGLEVQGVPRAEREERAAEALELV-------GLEGWEHKYPDE--------LSGGM 165
Query: 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRE---LTSQRKKTVLCTIHQ 231
++R+ A L DP +LL DE + LD LIR M E L ++ +KT++ H
Sbjct: 166 QQRVGLARALAVDPDILLMDEAFSALDP-----LIRREMQDELLRLQAELQKTIVFITHD 220
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPAD 279
E + + D+I ++ D R +G+ + L NPA+
Sbjct: 221 L-DEALRLGDRIAIMKDGRLVQVGTPEEILT-------------NPAN 254
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 48.1 bits (115), Expect = 5e-06
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A + +P +L+ DEPT GLD +++ ++EL + T++ H
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH- 203
Query: 232 PSSELIDMF-DKIILLADSRTAFIGS 256
S E + D+II++ + G+
Sbjct: 204 -SMEDVAKLADRIIVMNKGKCELQGT 228
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 48.2 bits (115), Expect = 5e-06
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGK--------PVEGKFRSACGFMYQH-DLFSPSL 117
S ++R F L+ +I ++G + +GK PVE R G ++Q + F S
Sbjct: 50 STILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE--VRRRIGMVFQKPNPFPKS- 106
Query: 118 TVYEHLYFMALLKLDRRVKAYQ--RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
+Y+++ + A R+ Y+ L+ L + L + ++ S ++ LSGG
Sbjct: 107 -IYDNIAYGA------RINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLS----LSGG 155
Query: 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH--QPS 233
+++RL A + P ++L DEP + LD S ++ +M EL + + T++ H Q +
Sbjct: 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL--KEQYTIIIVTHNMQQA 213
Query: 234 SELIDM 239
+ + DM
Sbjct: 214 ARVSDM 219
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 48.0 bits (115), Expect = 5e-06
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
SGGE+KR LL +P L + DEP +GLD + + + L + + ++ T +Q
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPC 271
+ I DK+ +L D R G + A LE +GY
Sbjct: 205 RLLDYIKP-DKVHVLYDGRIVKSGDPELAE-ELEEKGYDW 242
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 48.9 bits (117), Expect = 6e-06
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V LSGG+R+R++ A +L D +LL DE T+ LD+ S + + + L R T L
Sbjct: 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGR--TTLIIA 532
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
H+ ++ + D+I+++ R G+ +A
Sbjct: 533 HRLAT--VLKADRIVVMDQGRIVAQGTHAELIA 563
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 47.6 bits (114), Expect = 6e-06
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 87 GDIRVNGKPVEG--KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G+I ++GK + + ++Q+ LF P LTV+E++ F L+L + KA +
Sbjct: 55 GEILLDGKDITNLPPHKRPVNTVFQNYALF-PHLTVFENIAFG--LRLKKLPKAEIK-ER 110
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ L + L + + LSGG+++R++ A L+ +P +LL DEP LD
Sbjct: 111 VAEALDLVQLEGYANRKPSQ--------LSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
Query: 204 SFSASKLIRMMR-ELTSQRKKT----VLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
KL + M+ EL +K+ V T Q E + M D+I ++ + IG+
Sbjct: 163 ----LKLRKDMQLELKRLQKELGITFVFVTHDQ--EEALTMSDRIAVMNKGKIQQIGT 214
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 47.7 bits (114), Expect = 6e-06
Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 29/167 (17%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQH-DLFSPSLTV 119
S L+R F ++ ++D+C I+G+IR++G+ + K R G ++Q + F S +
Sbjct: 65 STLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKS--I 122
Query: 120 YEHLYFMALLKL----DRRV--KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173
YE++ + L+L +RRV +A +R +L + L + R+ ++ LS
Sbjct: 123 YENVVYG--LRLQGINNRRVLDEAVER-SLRGA-----ALWDEVKDRLHENAFG----LS 170
Query: 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
GG+++RL A + +P +LL DEPT+ LD S K+ ++ EL S+
Sbjct: 171 GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSK 217
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 47.6 bits (113), Expect = 6e-06
Identities = 41/194 (21%), Positives = 88/194 (45%), Gaps = 18/194 (9%)
Query: 76 LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVYEHLYFMALL 129
++ +I + I+G++ ++GK + K R G ++Q P +++Y+++ + +
Sbjct: 53 MNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRI 111
Query: 130 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189
+ K +I + L + L + + S++ LSGG+++RL A +
Sbjct: 112 HGIKDKKELDKI--VEWALKKAALWDEVKDDLKKSALK----LSGGQQQRLCIARTIAVK 165
Query: 190 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-----MFDKII 244
P ++L DEPT+ LD S K+ +M EL + ++ Q +S + D + +I
Sbjct: 166 PDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI 225
Query: 245 LLADSRTAFIGSKD 258
+ F+ +
Sbjct: 226 EFNKTEKIFLEPQK 239
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 47.6 bits (114), Expect = 7e-06
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
SGG ++RL A L+T P L+ DEPT GLD ++L+ ++R L +
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE 200
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 48.8 bits (117), Expect = 7e-06
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGGER+R++ LL+ P +LL DEPT LD+ S + L + ++E TV+ H
Sbjct: 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTH 216
Score = 43.4 bits (103), Expect = 3e-04
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 168 QKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
QK V LSGGER R+ A L + +LL DEPT LD
Sbjct: 438 QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 47.5 bits (113), Expect = 7e-06
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 30/170 (17%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSL---TVYE 121
S LI+L ++++ID +G I ++G ++ R G ++Q P L TV +
Sbjct: 43 STLIKL-INRLIDP--TEGSILIDGVDIKTIDVIDLRRKIGMVFQQ----PHLFEGTVKD 95
Query: 122 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV-LSGGERKRL 180
++ + +LK ++ V ++++ GL TR V LSGGE +R+
Sbjct: 96 NIEYGPMLKGEKNVDVEYYLSIV-------GLNKEYATR--------DVKNLSGGEAQRV 140
Query: 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
S A L +P +LL DEPT+ LD S + ++ +L ++ TV+ H
Sbjct: 141 SIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 47.5 bits (114), Expect = 7e-06
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGG+++RL A L P +LL DEPT+ LD S K+ ++ EL
Sbjct: 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL 195
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 47.5 bits (113), Expect = 8e-06
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 172 LSGGERKRLSFATEL---------LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 222
LSGGE R+ FA L P LL DEPT LD +L+ +R L
Sbjct: 146 LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN 205
Query: 223 KTVLCTIHQPSSELIDMFDKIILLADSR 250
VL +H P+ D+I +LAD
Sbjct: 206 LGVLAIVHDPNLA-ARHADRIAMLADGA 232
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 48.6 bits (116), Expect = 8e-06
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 152 GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI 211
L T IG + V+LSGG+R+RL+ A LL D +L+ DE T+ LD+ S +
Sbjct: 454 KLPLGLDTPIGENG----VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQ 509
Query: 212 RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
+ L + +T L H+ S+ I+ D+I+++ D R
Sbjct: 510 AALERL--MQGRTTLVIAHRLST--IEKADRIVVMDDGR 544
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 48.3 bits (116), Expect = 8e-06
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
T IG + LS G+ +RL+ A LL LLL DEPT LD+ S +++ +
Sbjct: 476 DTPIGDQAAG----LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531
Query: 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
S+R+ T++ T HQ +L D+I ++ D
Sbjct: 532 -SRRQTTLMVT-HQ-LEDLAQW-DQIWVMQD 558
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 47.1 bits (112), Expect = 1e-05
Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 20/159 (12%)
Query: 80 IDDCIIDGDIRVNG-KPVEGKFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKA 137
+ D ID ++ K + + R GF++Q+ +LF P TV E++ ++ VK
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLF-PHRTVLENIIEGPVI-----VKG 115
Query: 138 YQR---IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
+ A LL ++GL + +S ++ LSGG+++R++ A L P ++L
Sbjct: 116 EPKEEATARARELLAKVGLAGKE------TSYPRR--LSGGQQQRVAIARALAMRPEVIL 167
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233
DEPT+ LD +++ +R+L +Q K+T++ H+ S
Sbjct: 168 FDEPTSALDPELVGEVLNTIRQL-AQEKRTMVIVTHEMS 205
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 47.1 bits (112), Expect = 1e-05
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
LL++LG + S S Q +SGG+ ++++ + L +P +++ DEPT GLD S
Sbjct: 128 LLMDLGFSRD----VMSQSPFQ---MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180
Query: 207 ASKLIRMMRELTSQRKKTVLCTIH 230
+++R+++ L + KT++ H
Sbjct: 181 KRQVMRLLKSLQTDENKTIILVSH 204
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 46.6 bits (111), Expect = 1e-05
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 24/144 (16%)
Query: 84 IIDGDIRVNGKPVEGK------FRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVK 136
I GD+ V+G V R G ++Q LF P LT E++ F RV+
Sbjct: 53 ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLF-PHLTALENVMFGP-----LRVR 106
Query: 137 AYQRIA---LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 193
+ LL ++GL H LSGG+++R++ A L P L+
Sbjct: 107 GASKEEAEKQARELLAKVGLAERAHHYPSE--------LSGGQQQRVAIARALAVKPKLM 158
Query: 194 LCDEPTTGLDSFSASKLIRMMREL 217
L DEPT+ LD +++++M++L
Sbjct: 159 LFDEPTSALDPELRHEVLKVMQDL 182
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 48.1 bits (115), Expect = 1e-05
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V+LSGG+R+R++ A LL D +L+ DE T+ LD+ S + + EL Q+ +T L
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVIA 536
Query: 230 HQPSSELIDMFDKIILLADSR 250
H+ S+ I+ D+I+++ D
Sbjct: 537 HRLST--IEKADEILVVEDGE 555
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.8 bits (111), Expect = 1e-05
Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 31/160 (19%)
Query: 85 IDGDIRVNGKPV-EGK-----FRSACGFMYQHDLFSPSLTVYEHLYFMALL-------KL 131
++G I G+ + + + +R G ++Q P +++Y+++ F + KL
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKL 119
Query: 132 DRRV-KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190
DR V ++ ++ AL + + EL ++ LSGG+++RL A L +P
Sbjct: 120 DRIVEESLKKAALWDEVKSELNKPGTR--------------LSGGQQQRLCIARALAVEP 165
Query: 191 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
++L DEPT+ LD + ++ +++ EL+ T++ H
Sbjct: 166 EVILLDEPTSALDPIATQRIEKLLEELS--ENYTIVIVTH 203
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 46.9 bits (111), Expect = 1e-05
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++RL A L +P +LL DEPT+ LD S +++ +M +L ++ T++ H
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL--KKVTTIIIVTH 205
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 46.4 bits (111), Expect = 1e-05
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 16/115 (13%)
Query: 152 GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS----A 207
L + T +G +Q LSGG+++R++ A LL +P +LL DE T+ LD+ S
Sbjct: 124 SLPDGYDTLVGERG-SQ---LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 208 SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
L R M+ +T + H+ S+ I D I +L + + G+ D +A
Sbjct: 180 EALDRAMKG------RTTIVIAHRLST--IRNADLIAVLQNGQVVEQGTHDELMA 226
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 46.7 bits (111), Expect = 1e-05
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 30/187 (16%)
Query: 76 LSQVIDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALL 129
++ + + I G I NG + R G ++Q P +++YE++ + L
Sbjct: 54 MNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRL 112
Query: 130 KLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
K +K Q + + L + + R+ S++ LSGG+++R+ A L T
Sbjct: 113 K---GIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG----LSGGQQQRVCIARVLAT 165
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH--QPSSELIDMFDKIILL 246
P ++L DEPT+ LD SA K+ + L + T+L Q +S + D
Sbjct: 166 SPKIILLDEPTSALDPISAGKIEETLLGL--KDDYTMLLVTRSMQQASRISD-------- 215
Query: 247 ADSRTAF 253
RT F
Sbjct: 216 ---RTGF 219
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 46.2 bits (110), Expect = 1e-05
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 221
SGGE++R++ A + D +LL DEPT LD+ + ++ ++ E ++
Sbjct: 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARG 199
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 45.9 bits (109), Expect = 2e-05
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LS G+R+ L A LL P +L+ DE T +D + + + + +RE + T+L H+
Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT--NSTILTIAHR 183
Query: 232 PSSELIDMFDKIILLADSRTAFIGS 256
+ +ID +DKI+++
Sbjct: 184 LRT-IID-YDKILVMDAGEVKEYDH 206
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 47.0 bits (111), Expect = 2e-05
Identities = 51/203 (25%), Positives = 96/203 (47%), Gaps = 27/203 (13%)
Query: 69 SELIRLFLSQVID----DCIIDG-DI-RVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEH 122
S ++RL L+++I+ +IDG DI +++ + R ++Q P +TV ++
Sbjct: 68 STMVRL-LNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDN 126
Query: 123 LYF-MALLKL---DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178
F M L + +RR KA L ++GL N H+ LSGG R+
Sbjct: 127 TAFGMELAGINAEERREKALDA-------LRQVGLENYAHSYPDE--------LSGGMRQ 171
Query: 179 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238
R+ A L +P +LL DE + LD +++ + +L ++ ++T++ H E +
Sbjct: 172 RVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD-LDEAMR 230
Query: 239 MFDKIILLADSRTAFIGSKDAAL 261
+ D+I ++ + +G+ D L
Sbjct: 231 IGDRIAIMQNGEVVQVGTPDEIL 253
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 46.5 bits (110), Expect = 2e-05
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A + D L+ DEPT GLD I + L + KK ++ H
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210
Query: 232 PSSELIDMFDKIILLADSRTAFIGS 256
+++ + D++I++ + + IGS
Sbjct: 211 -MDQVLRIADEVIVMHEGKVISIGS 234
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 46.0 bits (109), Expect = 2e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
SGG ++RL A L+T P L+ DEPT GLD ++L+ ++R L V+ H
Sbjct: 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 47.0 bits (112), Expect = 2e-05
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE++R++ A +L +P +L+ DE T+ LD+ + + +RE+++ R T L H+
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR--TTLVIAHR 457
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S+ +ID D+II+L + R G+ + LA
Sbjct: 458 LST-IIDA-DEIIVLDNGRIVERGTHEELLA 486
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 46.4 bits (110), Expect = 2e-05
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L P +L+ DEPT GLD ++++++ + KTV H
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHT 235
Query: 232 PSSELIDMFDKIILLA 247
++++ D++I++
Sbjct: 236 -MEHVLEVADEVIVMD 250
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 46.3 bits (109), Expect = 3e-05
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH- 230
LSGG+++RL A + +P +LL DEPT+ LD + +K+ ++ EL ++K +++ H
Sbjct: 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL--KKKYSIIIVTHS 283
Query: 231 -----QPSSELIDMFDKIILLA-DSRTAFIGSKD 258
+ S E + + I A +++T FI K+
Sbjct: 284 MAQAQRISDETVFFYQGWIEEAGETKTIFIHPKN 317
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 46.5 bits (111), Expect = 3e-05
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LS GE ++ L+++P LL+ DEP GLD S +L ++ L + L +
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL--HQSGITLVLVLN 193
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
E+ D +LAD A G ++ L
Sbjct: 194 RFDEIPDFVQFAGVLADCTLAETGEREEILQ 224
Score = 29.2 bits (66), Expect = 6.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LS G+++ L+ P LL+ DEP GLD
Sbjct: 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 44.6 bits (106), Expect = 3e-05
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 137 AYQRIALINSL--LIELGLMNSQHTRIGSSSITQKV-VLSGGERKRLSFATELL--TDPA 191
+ ++ I+ L LI++GL G ++ QK+ LSGGE +R+ A+EL
Sbjct: 58 SRNKLIFIDQLQFLIDVGL--------GYLTLGQKLSTLSGGELQRVKLASELFSEPPGT 109
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP-----SSELIDM 239
L + DEP+TGL ++L+ +++ L TV+ H + +ID
Sbjct: 110 LFILDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIEHNLDVLSSADWIIDF 161
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 45.5 bits (108), Expect = 3e-05
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
I+ +L + L N+ + S+ G ++RL A LL P LL+ DEPT GLD
Sbjct: 105 IDEVLNIVDLTNTGKKKAKQFSL--------GMKQRLGIAIALLNHPKLLILDEPTNGLD 156
Query: 204 SFSASKLIRMMRELTSQ 220
+L ++R Q
Sbjct: 157 PIGIQELRELIRSFPEQ 173
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 45.5 bits (108), Expect = 3e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
SGG ++RL A L+T P L+ DEPT GLD ++L+ ++R L + V+ H
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 45.3 bits (107), Expect = 3e-05
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
+ LSGGE++R+ A ++ PA+LL DEPT LD + ++R+ E ++ TVL
Sbjct: 136 IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF-NRVGVTVLMAT 194
Query: 230 H 230
H
Sbjct: 195 H 195
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 45.7 bits (108), Expect = 3e-05
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH- 230
LSGG+++RL A L +P +LL DEPT+ LD + +K+ +++EL T++ H
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY--TIMIVTHN 240
Query: 231 -QPSSELID--MF 240
Q +S + D MF
Sbjct: 241 MQQASRVSDYTMF 253
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 44.0 bits (105), Expect = 4e-05
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LS GER+ + A L + LL+ DEPT L +L +++R L +Q V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHR 141
Query: 232 PSSELIDMFDKIILLADSRTA 252
E+ ++ D++ +L D R
Sbjct: 142 L-DEVFEIADRVTVLRDGRVV 161
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 45.2 bits (107), Expect = 4e-05
Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 16/158 (10%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVY 120
S +R F ++ + +C + G++ ++G V R+ G ++Q P ++Y
Sbjct: 45 STFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIY 103
Query: 121 EHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR 179
+++ + KL K +++ ++ L +GL R+ S+ LSGG+++R
Sbjct: 104 DNVAYGP--KLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE----LSGGQQQR 157
Query: 180 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
L A + P +LL DEP + LD + + + +++EL
Sbjct: 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL 195
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 45.2 bits (107), Expect = 4e-05
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++RL A + +P ++L DEPT+ LD + K+ +M EL ++ T++ H
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL--KKNYTIVIVTH 202
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 44.8 bits (107), Expect = 4e-05
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD--SFSA-SKLIRMMRELTSQRKKTVLCT 228
SGGE+KR LL +P L + DEP +GLD + +++I +RE K+VL
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE----EGKSVLII 160
Query: 229 IHQPSSELIDMF--DKIILLADSRTAFIGSKDAALAFLESQGY 269
H L+D D++ +L D R G K+ AL +E +GY
Sbjct: 161 THYQ--RLLDYIKPDRVHVLYDGRIVKSGDKELALE-IEKKGY 200
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 45.8 bits (109), Expect = 4e-05
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 37/180 (20%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL--------DRRVKAY 138
G+ R+N V R G ++Q P L+V E++ F LKL ++RV
Sbjct: 63 GEKRMN--DVPPAERGV-GMVFQSYALYPHLSVAENMSFG--LKLAGAKKEEINQRVNQV 117
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ + LL R + LSGG+R+R++ L+ +P++ L DEP
Sbjct: 118 AEVLQLAHLL----------DR-------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160
Query: 199 TTGLDSFSASKLIRMMRELTSQRKK---TVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
+ LD A+ ++M E++ K+ T++ H E + + DKI++L R A +G
Sbjct: 161 LSNLD---AALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVG 216
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 45.3 bits (107), Expect = 4e-05
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 148 LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 207
L + L + R+ SS+++ LSGG+++RL A L PA+LL DEP + LD S
Sbjct: 145 LTKAALWDEVKDRLHSSALS----LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200
Query: 208 SKLIRMMREL 217
+K+ ++ EL
Sbjct: 201 AKIEELITEL 210
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 46.1 bits (110), Expect = 5e-05
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 221
LSGGER+RL+ A LL DP +L+ DE T+ LD + +K+ + EL R
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGR 521
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 45.2 bits (107), Expect = 5e-05
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 159 TRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
+ +G + ++V LSGGER+R A + D LL DEPT+ LD ++ ++
Sbjct: 133 SLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192
Query: 217 LTSQRKKTVLCTIH 230
L+ +R TV+ +H
Sbjct: 193 LSQERGLTVIAVLH 206
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 44.4 bits (106), Expect = 5e-05
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LS G+R+ L A LL +L+ DE T +D + + + + +RE TVL H+
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDC--TVLTIAHR 197
Query: 232 PSSELIDMFDKIILLADSRTAFIGS 256
+ +ID D+I++L R S
Sbjct: 198 LDT-IID-SDRILVLDKGRVVEFDS 220
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 46.0 bits (109), Expect = 6e-05
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 172 LSGGERKRLSFATELLT---DPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGGE +RL A ELL P L + DEPTTGL + LI +++ LT Q
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ 861
Score = 37.1 bits (86), Expect = 0.036
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGL 202
S+LI+LGL R ++ LSGGE++R + A L L +L DEP+ GL
Sbjct: 458 SILIDLGLPYLTPERALAT-------LSGGEQERTALAKHLGAELIGITYIL-DEPSIGL 509
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244
KLI ++++L Q TVL H ++I + D+II
Sbjct: 510 HPQDTHKLINVIKKLRDQ-GNTVLLVEHD--EQMISLADRII 548
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 44.4 bits (105), Expect = 6e-05
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L+ +P +L+ DE T+ LD+ S ++ + + + ++TVL H+
Sbjct: 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD--WPERRTVLVIAHR 208
Query: 232 PSSELIDMFDKIILLADSR 250
S ++ D+I++L R
Sbjct: 209 LS--TVERADQILVLDGGR 225
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 44.6 bits (105), Expect = 6e-05
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 151 LGLMNSQHTRIGSSSITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 209
L L+++QH R Q + LS G++KR++ A L+ LL DEPT GLD ++
Sbjct: 121 LTLVDAQHFR------HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174
Query: 210 LIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243
+I ++R + +Q ++ SS ID+ +I
Sbjct: 175 MIAIIRRIVAQGNHVII------SSHDIDLIYEI 202
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease
component [Defense mechanisms].
Length = 286
Score = 44.9 bits (106), Expect = 6e-05
Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 14/226 (6%)
Query: 330 FLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSID 389
L+ F R ++ ++I+ ++ L + S+D
Sbjct: 31 ILSRFLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHW-----SNPSLD 85
Query: 390 LTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDM--LPLFHREYSSGLYSAFQFYLSYI 447
V + +M FS ++S S R S + F +
Sbjct: 86 YLAFIV----PGVILMSV--LFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIV 139
Query: 448 LSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVS 507
+ +I ++ VI + + + L+ +L+ +L+ VA ++ + A S +
Sbjct: 140 PYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALG-LLLSTFAKSQLQ 198
Query: 508 TAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEAL 553
A A L +GVF+ L LP + I Y++ L Y+ +AL
Sbjct: 199 CASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDAL 244
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 45.1 bits (107), Expect = 6e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
LSGG+++R++ A L +P L+ DEPT GLD +++ + L Q K +L T
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVT 222
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 44.4 bits (105), Expect = 7e-05
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 99 KFRSACGFMYQHDLFSPSLTVYEHLYF--MALLKLDRRVKAYQRIALINSLLIELGLMNS 156
R G ++Q P LTV E+L +L L + + L+ L
Sbjct: 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRL--------- 129
Query: 157 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
R+ + + LSGG+++R++ A L+ +P +LL DEPT LD ++++ +++E
Sbjct: 130 ---RLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKE 186
Query: 217 LTSQRKKTVLCT 228
L V+ T
Sbjct: 187 LAETGITQVIVT 198
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 45.5 bits (108), Expect = 8e-05
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
T + + +SGG+++R++ A LLTD +L+ DE T+ LD+ + K++ + L
Sbjct: 602 QTELSEEGSS----ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL 657
Query: 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
KT++ H+ S + DKII+L + GS D L
Sbjct: 658 Q---DKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 44.2 bits (105), Expect = 8e-05
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+R A L D +L DEP LD + ++++++R L + KT++ +H
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD 195
Query: 232 PSSELIDM----FDKIILLADSRTAFIGSKD 258
I+ D I+ L + + GS D
Sbjct: 196 -----INFASCYSDHIVALKNGKVVKQGSPD 221
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 44.6 bits (106), Expect = 8e-05
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+ +R++ A L +P +L+ DEPT GLD +++ M +L ++ T + H
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 44.2 bits (104), Expect = 9e-05
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGG+++RL A + T+P +LL DEP + LD + ++ +M EL
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL 195
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 44.7 bits (106), Expect = 9e-05
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 130 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189
K +R +A + + L+ GL LSGG ++R+ A L D
Sbjct: 138 KAEREERALEALELV-------GLEGYADKYPNE--------LSGGMQQRVGLARALAND 182
Query: 190 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249
P +LL DE + LD +++ + EL ++ KKT++ H E + + D+I ++ D
Sbjct: 183 PDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD-LDEALRIGDRIAIMKDG 241
Query: 250 RTAFIGSKDAALA 262
+G+ + L
Sbjct: 242 EIVQVGTPEEILL 254
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 44.3 bits (104), Expect = 9e-05
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+ +R++ A L +P +L+ DEPT GLD + +++++ E Q +TV+ H
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLF-ESIHQSGQTVVLVTHL 203
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCPYGYNPADFLIKSLAVT 288
++ D D + LL G+ FL++ P + AD L K+ AVT
Sbjct: 204 -MDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQKTGAVT 262
Query: 289 TNDELSSRRRLKRICDEFSV 308
+R L + SV
Sbjct: 263 FEKLPITRAELVTLLTSLSV 282
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 44.4 bits (105), Expect = 9e-05
Identities = 38/176 (21%), Positives = 87/176 (49%), Gaps = 20/176 (11%)
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
+R V + I ++ +L ++G+++ + + LSGG+++R++ A L +P
Sbjct: 112 NRAVPRPEMIKIVRDVLADVGMLDYIDS--------EPANLSGGQKQRVAIAGILAVEPK 163
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID---MFDKIILLAD 248
+++ DE T+ LD ++++++R+L + TV+ H ID M D++++L D
Sbjct: 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD-----IDEANMADQVLVLDD 218
Query: 249 SRTAFIGSKD---AALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKR 301
+ GS + + L+ G P+ Y + L + ++ E+++ +L +
Sbjct: 219 GKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEK-GISVPQEINTEEKLVQ 273
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 44.3 bits (105), Expect = 1e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
SGG R+R+ A LL P LL+ DEPTT LD ++++ ++ EL
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 207
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 43.9 bits (103), Expect = 1e-04
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 27/154 (17%)
Query: 80 IDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYF---MALLK 130
I++ I G+I+ G+ + G + R G ++Q P +VY+++ + +A +K
Sbjct: 57 IENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVK 115
Query: 131 ----LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186
+D+RV+ + A I + N+Q SGG+++R+ A L
Sbjct: 116 DKELIDQRVEESLKQAAIWKETKDNLDRNAQ-------------AFSGGQQQRICIARAL 162
Query: 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
P ++L DEPT+ LD S+S++ + EL Q
Sbjct: 163 AVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ 196
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 43.9 bits (103), Expect = 1e-04
Identities = 35/164 (21%), Positives = 80/164 (48%), Gaps = 21/164 (12%)
Query: 76 LSQVIDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPS---LTVYEHLYFM 126
++ +++ I+G++ GK + + R G ++Q +P+ +++Y+++ +
Sbjct: 56 MNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQ----TPNPFLMSIYDNISYG 111
Query: 127 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186
+ + K I + L + L N ++ +++++ LSGG+++RL A L
Sbjct: 112 PKIHGTKDKKKLDEI--VEQSLKKSALWNEVKDKLNTNALS----LSGGQQQRLCIARTL 165
Query: 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+P ++L DEPT+ LD S K+ ++ L + T++ H
Sbjct: 166 AIEPNVILMDEPTSALDPISTGKIEELIINL--KESYTIIIVTH 207
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 43.9 bits (104), Expect = 1e-04
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGG+++RL A + P +LL DEP + LD S +L M EL
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN 212
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 43.9 bits (103), Expect = 1e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
+ LSGG+++RL A L +P ++L DEP + LD S ++ +M+EL
Sbjct: 146 LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL 193
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 43.8 bits (103), Expect = 1e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+R+R A L + A++L DEPTT LD L+ ++ EL ++ T+ +H
Sbjct: 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 44.7 bits (107), Expect = 1e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LSGGER+R++ LL P +LL DEPT LD
Sbjct: 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Score = 42.0 bits (100), Expect = 9e-04
Identities = 21/38 (55%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 168 QKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
QK V LSGGER RL A L +LL DEPT LD
Sbjct: 440 QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 44.2 bits (105), Expect = 2e-04
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDS---FSASKLIRMMRELTSQRKKTVLCT 228
LSGGE +R++ A L + L L DEP+ LD +K+IR E +KT L
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIE---NNEKTALVV 512
Query: 229 IHQPSSELIDMF-DKIIL 245
H +ID D++I+
Sbjct: 513 DHDIY--MIDYVSDRLIV 528
Score = 43.4 bits (103), Expect = 3e-04
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCT 228
LSGGE +R++ A LL D + DEP++ LD +A+++I REL ++ K V+
Sbjct: 214 LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI---REL-AEDGKYVIVV 269
Query: 229 IH 230
H
Sbjct: 270 EH 271
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 42.9 bits (102), Expect = 2e-04
Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 28/154 (18%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLF--------SPSLTVYEHLYFMALLKLDRRVKAY 138
G++ G+P+ Y DL LT E+L F R+
Sbjct: 56 GEVLWQGEPI-----RRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQ------RLHGP 104
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ L ++GL + + LS G+++R++ A LT L + DEP
Sbjct: 105 GDDEALWEALAQVGLAGFEDVPVR--------QLSAGQQRRVALARLWLTRAPLWILDEP 156
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
T +D ++L ++ + ++ V+ T HQ
Sbjct: 157 FTAIDKQGVARLEALLAQHA-EQGGMVILTTHQD 189
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG R+R+ A L PA+L+ DEPTT LD ++++++++ L + V+ H
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228
Query: 232 PSSELIDMFDKIILLADSRTAFIGS 256
+ ++ D+++++ GS
Sbjct: 229 -MGVVAEIADRVLVMYQGEAVETGS 252
Score = 32.9 bits (75), Expect = 0.57
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 221
SGG+R+R+ A L +P +++ DE + LD ++I ++ +L QR
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL--QR 511
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 43.1 bits (101), Expect = 2e-04
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++RL A L P +LL DEP GLD ++ K+ +++ L + + T++ H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 42.8 bits (101), Expect = 2e-04
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
SGGE++R++ A + D +LL DEPT LD+ + + ++ ++RE
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 43.3 bits (102), Expect = 2e-04
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGG+++RL A L +P ++L DEPT+ LD S K+ +++EL
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL 213
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 42.5 bits (101), Expect = 2e-04
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MREL 217
T IG I LSGG+++R+S A + +D + L D+P + +D+ + + L
Sbjct: 119 TEIGEKGIN----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGL 174
Query: 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
K +L T HQ +L+ D+I++L + R
Sbjct: 175 LLNNKTRILVT-HQL--QLLPHADQIVVLDNGR 204
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 42.6 bits (101), Expect = 2e-04
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQ 231
SGGE+KR L +P L + DE +GLD A K++ + L + ++ T +Q
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLD-IDALKIVAEGINRLREPDRSFLIITHYQ 204
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGY 269
I D + +L D R G + A LE +GY
Sbjct: 205 RLLNYIKP-DYVHVLLDGRIVKSGDVELAKE-LEEKGY 240
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 42.8 bits (100), Expect = 3e-04
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A + P +++ DE T+ LD +++R++ E+ + + TVL H
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200
Query: 232 ----PSSE--LIDMFDKIILLADSRTAFIGSKDAA------------LAFLESQGYPCPY 273
SS+ L+ +II A F S+D + L G+ P
Sbjct: 201 LDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVPFSSNLMKDLRKNGFDLPE 260
Query: 274 GYNPADFLIKSLA 286
Y D L++ LA
Sbjct: 261 KYLSEDELVELLA 273
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 43.5 bits (103), Expect = 3e-04
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
VLSGGE++RL+FA LL P + DE T+ LD + +L ++++E TV+ H
Sbjct: 515 VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPD--ATVISVGH 572
Query: 231 QPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
+P+ L + + + L D A
Sbjct: 573 RPT--LWNFHSRQLELLDDAGGQNLKPPALPT 602
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 43.3 bits (103), Expect = 3e-04
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDS---FSASKLI-RMMRELTSQRKKTVLC 227
LSGGE +R++ A L D L L DEP+ LD + +K I R+ E R+ T L
Sbjct: 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE----REATALV 509
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIG 255
H I M D ++D F G
Sbjct: 510 VDHD-----IYMID---YISDRLMVFEG 529
Score = 39.4 bits (93), Expect = 0.006
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 20/83 (24%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCT 228
LSGGE +R++ A LL D DEPT+ LD + ++LI REL K VL
Sbjct: 213 LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI---RELA--EGKYVLVV 267
Query: 229 IHQPSSELIDMFDKIIL--LADS 249
H D +L LAD+
Sbjct: 268 EH----------DLAVLDYLADN 280
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 42.7 bits (100), Expect = 3e-04
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
I D I +N + R G ++Q P +++YE++ + +++ ++ +
Sbjct: 76 IYDPRININ------RLRRQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEI 126
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ S L L ++ S++ LSGG+++RL A L P +LL DEP + LD
Sbjct: 127 VESALKGAALWQEVKDKLNKSALG----LSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
Query: 204 SFSASKLIRMMRELTSQ 220
+ K+ ++ L S+
Sbjct: 183 PIATMKVEELIHSLRSE 199
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 42.3 bits (100), Expect = 3e-04
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGG+++RL A + P +LL DEP + LD S ++ ++ EL
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD 205
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 42.9 bits (102), Expect = 3e-04
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LSGGE++R++ LLT P LLL DEP LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 42.1 bits (99), Expect = 4e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGG+++RL A + +P ++L DEP + LD S K+ M EL
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL 200
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 42.0 bits (99), Expect = 4e-04
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
QK LSGGE +R+ A LL P LL+ DEPT G+D
Sbjct: 119 QK--LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 43.0 bits (102), Expect = 4e-04
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+RL A L+ +P++L+ DE T+ LD + + +R +R T + H+
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR----RRGCTCIIVAHR 671
Query: 232 PSSELIDMFDKIILL 246
S+ I D+II+L
Sbjct: 672 LST--IRDCDEIIVL 684
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 42.0 bits (99), Expect = 4e-04
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++R++ A L +P++++ DE T+ LD + L+ ++R++ S+ T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 42.1 bits (99), Expect = 5e-04
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGG+++RL A L +P +LL DEP + LD + K+ ++ EL ++
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR 198
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 41.9 bits (99), Expect = 5e-04
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGG+++R++ A L+ +P +LL DEPT LD ++++ ++REL
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL 187
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 42.0 bits (99), Expect = 5e-04
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 223
LSGG +R+ A + P LL+ DEPTT LD +++I ++ EL Q+K+
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL--QQKE 203
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 41.2 bits (97), Expect = 6e-04
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 114 SPSL---TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170
+P+L TVY++L F + R + ++ L L ++ I + +I +
Sbjct: 89 TPTLFGDTVYDNLIFPWQI----RNQQPDPAIFLDDL-ERFALPDT----ILTKNIAE-- 137
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGGE++R+S L P +LL DE T+ LD + + ++ ++ VL H
Sbjct: 138 -LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTH 196
Query: 231 QPSSELIDMFDKIILL 246
+ I+ DK+I L
Sbjct: 197 --DKDEINHADKVITL 210
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 42.1 bits (100), Expect = 7e-04
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 22/126 (17%)
Query: 87 GDIRVNGKPV----EGKFRSA---CGFMYQH-DLFSPSLTVYEHLYFMAL-LKLDRRVKA 137
G + V+G+ + E + R A G ++QH +L S S TV++++ AL L+L KA
Sbjct: 60 GRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS-SRTVFDNV---ALPLELAGTPKA 115
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ A + LL +GL + + R + LSGG+++R++ A L ++P +LLCDE
Sbjct: 116 -EIKARVTELLELVGLSD-KADRYPAQ-------LSGGQKQRVAIARALASNPKVLLCDE 166
Query: 198 PTTGLD 203
T+ LD
Sbjct: 167 ATSALD 172
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 41.6 bits (98), Expect = 7e-04
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 80 IDDCIIDGDIRVNGK--------PVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 131
ID C + G I ++G+ VE R+ G ++Q P ++YE++ + +
Sbjct: 72 IDGCRVTGKITLDGEDIYDPRLDVVE--LRARVGMVFQKPNPFPK-SIYENVAYGPRIHG 128
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
R KA + SL + GL R+ LSGG+++RL A + P
Sbjct: 129 LARSKAELDEIVETSLR-KAGLWEEVKDRLHEPGTG----LSGGQQQRLCIARAIAVSPE 183
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
++L DEP + LD + +K+ ++ EL
Sbjct: 184 VILMDEPCSALDPIATAKVEELIDELRQN 212
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 41.6 bits (98), Expect = 7e-04
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 429 HREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILY-WISGLRNSLSVFLMAVLICIL 487
R SG+ S ++ L IL L +IQ ++ ++L+ N L + L+ +L +
Sbjct: 127 ERLLVSGV-SPLKYLLGKILGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLA 185
Query: 488 IINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYL 543
I + G + F + A+ + L G + L ++P + WI +
Sbjct: 186 YI----ALGALLGSLFKNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSI 237
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 41.7 bits (98), Expect = 7e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
LSGG+ +R++ A L +P +L+ DEPT GLD +L+ + ++L VL T
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 41.2 bits (97), Expect = 7e-04
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+SGG +R+ A LL + ++ DEPTT LD + ++++ ++ + +R +L H
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 41.1 bits (97), Expect = 7e-04
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 31/136 (22%)
Query: 118 TVYEHLYFMALLKLDRRVKAYQRIALINSL--LIELGLMNSQHTRIGSSSITQKVVLSGG 175
TV E ++ LL + R+ + L L+++GL + + S+ T LSGG
Sbjct: 97 TVTEIYDYLRLL--------FARVGIRERLGFLVDVGL---GYLTLSRSAPT----LSGG 141
Query: 176 ERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
E +R+ AT++ LT L + DEP+ GL +LI ++ L TVL H
Sbjct: 142 EAQRIRLATQIGSGLTG-VLYVLDEPSIGLHPRDNDRLIETLKRLRDL-GNTVLVVEHDE 199
Query: 233 SSELIDMFDKIILLAD 248
I AD
Sbjct: 200 ---------DTIRAAD 206
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 41.2 bits (97), Expect = 8e-04
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 19/152 (12%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL-- 143
DGD + P R+ G +Q +LTV E+L L D+ V A L
Sbjct: 65 DGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENL--ELALNRDKSVFASLFARLRA 122
Query: 144 -----INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
I+ LL +GL + + LS G+++ L L DP LLL DEP
Sbjct: 123 EERRRIDELLATIGLGDERDRLAAL--------LSHGQKQWLEIGMLLAQDPKLLLLDEP 174
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
G+ K +++ L K ++L H
Sbjct: 175 VAGMTDAETEKTAELLKSL--AGKHSILVVEH 204
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 42.1 bits (99), Expect = 8e-04
Identities = 19/79 (24%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG +++ A LLT+P +L+ DEPT G+D + ++ +++ +L + ++ +
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463
Query: 232 PSSELIDMFDKIILLADSR 250
E++ + D+++++ + +
Sbjct: 464 A--EVLGLSDRVLVIGEGK 480
Score = 40.2 bits (94), Expect = 0.003
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 19/182 (10%)
Query: 86 DGDIRVNGKPVEGKF-----RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
DG+I +G P++ R+ ++Q P L+V E+++ + L AY
Sbjct: 57 DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNA 116
Query: 141 IAL-INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
+ L +LL EL L TR GG+++ + A L LL+ DEP+
Sbjct: 117 MYLRAKNLLRELQLDADNVTRPVGD-------YGGGQQQLVEIAKALNKQARLLILDEPS 169
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ L L+ ++R+L + V C I +E+ + D I ++ D + + +KD
Sbjct: 170 SSLTEKETEILLDIIRDL---KAHGVACVYISHKLNEVKAVCDTICVIRDGQ--HVATKD 224
Query: 259 AA 260
+
Sbjct: 225 MS 226
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 41.8 bits (99), Expect = 9e-04
Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 32/177 (18%)
Query: 87 GDIRVNGKPVEGKFRSA-------CGFMYQHDLFSPSLTVYEHLYFMAL---LKLDRRVK 136
G I ++G+ + +F S +YQ P +TV E+LY L + R
Sbjct: 59 GSILIDGQEM--RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRL 116
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
L LG+ T + SI G+R+ + A L + ++ D
Sbjct: 117 LNYEAREQ---LEHLGVDIDPDTPLKYLSI--------GQRQMVEIAKALARNARVIAFD 165
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253
EPT+ L + +L R++REL ++ + +L H+ ++I L D+ T F
Sbjct: 166 EPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHR--------MEEIFALCDAITVF 213
Score = 31.0 bits (71), Expect = 2.0
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 160 RIGSSSITQKVV-LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 218
I + S Q ++ LSGG +++ L D ++L DEPT G+D + ++ ++ EL
Sbjct: 384 NIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL- 442
Query: 219 SQRKKTVLCTIHQPSSEL---IDMFDKIILLADSRTA 252
+ + VL SS+L + + D+I+++ + R A
Sbjct: 443 AAQGVAVLFV----SSDLPEVLGVADRIVVMREGRIA 475
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 41.9 bits (99), Expect = 0.001
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 87 GDIRVNGKPVEGKFRS-----ACGFMY-----QHDLFSPSLTVYEHLYFMALLKLDR--- 133
G + ++G V RS A G +Y + D ++V E++ AL R
Sbjct: 307 GYVTLDGHEV--VTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGG 364
Query: 134 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV-VLSGGERKRLSFATELLTDPAL 192
+K ++ + L N I + S+ Q + +LSGG +++++ A L+T P +
Sbjct: 365 SLKHADEQQAVSDFI---RLFN-----IKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKV 416
Query: 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS--ELIDMFDKIILLADSR 250
L+ DEPT G+D A K I +L +Q K L I S E++ M D+I+++ + R
Sbjct: 417 LILDEPTRGVD-VGAKKEI---YQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
Score = 36.1 bits (84), Expect = 0.051
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
LL L L S +G SI GE++ + A L + +++ DEPT L
Sbjct: 125 LLARLNLRFSSDKLVGELSI--------GEQQMVEIAKVLSFESKVIIMDEPTDALTDTE 176
Query: 207 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF---DKIILLADSRTAFIGSKDAA 260
L R++REL SQ I S L ++F D + + D + FI ++ A
Sbjct: 177 TESLFRVIRELKSQG-----RGIVYISHRLKEIFEICDDVTVFRDGQ--FIAEREVA 226
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 41.4 bits (97), Expect = 0.001
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 107 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE-LGLMNSQHTRIGSSS 165
M+Q P +TV +++ F LK D+ KA I S + E LGL++ Q
Sbjct: 96 MFQSYALFPHMTVEQNIAFG--LKQDKLPKAE-----IASRVNEMLGLVHMQ--EFAKRK 146
Query: 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
Q LSGG+R+R++ A L P LLL DEP LD
Sbjct: 147 PHQ---LSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 40.9 bits (96), Expect = 0.001
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 78 QVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 131
+VI ++G++ ++G+ + G R G ++Q P++++ +++ +A LKL
Sbjct: 55 EVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV--VAGLKL 112
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
+ L+ L L N R+ LSGG+++RL A + +P
Sbjct: 113 NGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGG----LSGGQQQRLCIARAIAVEPD 168
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
+LL DEP + LD S + ++ EL
Sbjct: 169 VLLMDEPCSALDPISTLAIEDLINELKQD 197
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 40.7 bits (95), Expect = 0.001
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++RL A + P ++L DEP + LD S +K+ ++ +L + T++ H
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL--KEDYTIVIVTH 203
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 40.8 bits (95), Expect = 0.001
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH- 230
LSGG+++RL A + P +LL DEP + LD S ++ + EL Q T++ H
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQY--TIIMVTHN 219
Query: 231 -QPSSELID 238
Q +S + D
Sbjct: 220 MQQASRVAD 228
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 40.5 bits (95), Expect = 0.001
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
Y + + L IE +++ + LSGGE +R++ A L D + L D
Sbjct: 93 PYFKTEIAKPLQIE-QILDREVPE-----------LSGGELQRVAIAACLSKDADIYLLD 140
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
EP+ LD +++R +KT H
Sbjct: 141 EPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 41.7 bits (98), Expect = 0.001
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 172 LSGGERKRLSFATEL-LTD--------PALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 222
LSGGER S A L L+D L L DEP LD KL ++ EL S +
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFL-DEPFGTLDEERLEKLAEILEELLSDGR 874
Query: 223 KTVLCTIHQPSSELIDMFDKIILL 246
+ ++ + + EL + D I +
Sbjct: 875 QIIIISHVE---ELKERADVRIRV 895
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 40.2 bits (94), Expect = 0.001
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 14/146 (9%)
Query: 117 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176
+TV E+L M +R + +RI + L L + R G+ +SGGE
Sbjct: 95 MTVEENLA-MGGFFAERD-QFQERIKWVYELFPRL--HERRIQRAGT--------MSGGE 142
Query: 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236
++ L+ L++ P LLL DEP+ GL ++ + +L Q L + Q +++
Sbjct: 143 QQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL--VEQNANQA 200
Query: 237 IDMFDKIILLADSRTAFIGSKDAALA 262
+ + D+ +L + + DA LA
Sbjct: 201 LKLADRGYVLENGHVVLEDTGDALLA 226
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 40.9 bits (96), Expect = 0.002
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG ++R+ A T+ +LL DEP + LD ++L + EL S+ KKT++ H
Sbjct: 165 LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSH 223
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 40.9 bits (96), Expect = 0.002
Identities = 30/74 (40%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 130 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189
KLD + A+ + SLL LG N Q R S SGG R RL+ A L+
Sbjct: 116 KLDA-IDAWTIRSRAASLLHGLGFSNEQLERPVSD-------FSGGWRMRLNLAQALICR 167
Query: 190 PALLLCDEPTTGLD 203
LLL DEPT LD
Sbjct: 168 SDLLLLDEPTNHLD 181
Score = 36.3 bits (84), Expect = 0.044
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLD 203
SGGE+ RL A + P LLL DEPT LD
Sbjct: 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 40.2 bits (94), Expect = 0.002
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
L+ GE +++ A L P LL+ DEPT ++ + +++ R++ L T+L H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 40.9 bits (96), Expect = 0.002
Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L+ P +L+ DE T+ LD+ ++++E S+ +TVL H+
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECE----QLLQESRSRASRTVLLIAHR 673
Query: 232 PSSELIDMFDKIILL 246
S ++ D+I++L
Sbjct: 674 LS--TVERADQILVL 686
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 41.0 bits (96), Expect = 0.002
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCT 228
+ LSGG+R R+S A + D L L D P T LD + ++ + +L S + + ++ +
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606
Query: 229 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVT 288
E + DKI+LL + F G+ F E Q DF L +
Sbjct: 607 ----KLEHLKKADKILLLHEGVCYFYGT------FSELQA-------KRPDFSSLLLGLE 649
Query: 289 TNDELSSRRR 298
D S+ RR
Sbjct: 650 AFDNFSAERR 659
Score = 29.1 bits (65), Expect = 8.7
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
VLS G ++ + A +L+ +LL DEP+ LD + + + +++
Sbjct: 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 40.3 bits (95), Expect = 0.003
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR-ELTS-QRK---KTVL 226
LSGG+++R++ A ++ P +LL DE + LD KL + M+ EL + QRK V
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALD----YKLRKQMQNELKALQRKLGITFVF 200
Query: 227 CTIHQPSSELIDMFDKIILLADSRTAFIGS 256
T Q E + M D+I+++ D R G+
Sbjct: 201 VTHDQ--EEALTMSDRIVVMRDGRIEQDGT 228
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 40.3 bits (95), Expect = 0.003
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 162 GSSSITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
I + V VLSGGE+ R+ F ++ P +L+ DEPT +D
Sbjct: 428 SQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
Score = 33.3 bits (77), Expect = 0.41
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
LL+ +G+ QH + S ++ G + R+ A L ++P +LL DEPT LD +
Sbjct: 138 LLLGVGIPEEQHYGLMSE-------VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT 190
Query: 207 ASKLIRMMRELTSQRKKTVLCTIH 230
IR + ++ ++R T++ H
Sbjct: 191 ----IRWLEDVLNERNSTMIIISH 210
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 39.5 bits (93), Expect = 0.003
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
G I+ G+P+E + R ++ Q ++ V+++L L + +
Sbjct: 50 GSIQFAGQPLEAWSAAELARHR---AYLSQQQTPPFAMPVFQYL----TLHQPDKTRTEA 102
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE--RKRLSFATELLTDPA------ 191
+ +N + LGL + S+ Q LSGGE R RL+ A L P
Sbjct: 103 VASALNEVAEALGLDDKLGR-----SVNQ---LSGGEWQRVRLA-AVVLQVWPDINPAGQ 153
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LLL DEP LD + L R++ EL Q
Sbjct: 154 LLLLDEPMNSLDVAQQAALDRLLSELCQQ 182
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 40.2 bits (94), Expect = 0.003
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LS G+++R A L P +LL DE LD +A ++ R + EL + T++ H+
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
Query: 232 PSSELIDMF--DKIILLA 247
P E+ + D +IL+
Sbjct: 568 P--EVGNALRPDTLILVG 583
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 40.0 bits (94), Expect = 0.003
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG ++++ A L P LL+ DEPT G+D + + + +++R + +Q + I
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF--ISS 461
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDA-------ALAFLESQG 268
E+ M D+++++ + + A LAF E Q
Sbjct: 462 DLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMRLAFGEHQA 505
Score = 37.0 bits (86), Expect = 0.032
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 21/115 (18%)
Query: 109 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT- 167
Q L P+L+V E++ L L +R + Q++ LL LG + GS +
Sbjct: 93 QEPLLFPNLSVKENI----LFGLPKRQASMQKMK---QLLAALGCQLDLDSSAGSLEVAD 145
Query: 168 QKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
+++V L G L+ D +L+ DEPT L +L +REL +Q
Sbjct: 146 RQIVEILRG-----------LMRDSRILILDEPTASLTPAETERLFSRIRELLAQ 189
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 39.6 bits (93), Expect = 0.003
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLD-SFSASKLIRMM 214
SGG+R+R++ A L+ DP +++ DEP + LD S A L MM
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMM 198
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 40.1 bits (95), Expect = 0.004
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 160 RIGSSSITQKVVLSGGERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRE 216
++G + T LSGGE +R+ A EL T L + DEPTTGL KL+ ++
Sbjct: 823 KLGQPATT----LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHR 878
Query: 217 LTSQ 220
L +
Sbjct: 879 LVDK 882
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 39.5 bits (93), Expect = 0.005
Identities = 18/32 (56%), Positives = 19/32 (59%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LSGGER RL A L LL+ DEPT LD
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
Score = 37.6 bits (88), Expect = 0.021
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
IN +L +LGL + S LSGG ++ + L+++P +LL DEPT LD
Sbjct: 139 INEVLAQLGL--DPDAALSS--------LSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 38.7 bits (90), Expect = 0.005
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
+ LSGG+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVT- 216
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 289
E + DKI++L + + F G+ F E Q DF K + T
Sbjct: 217 --SKMEHLKKADKILILHEGSSYFYGT------FSELQS-------LRPDFSSKLMGYDT 261
Query: 290 NDELSSRRR 298
D+ S+ RR
Sbjct: 262 FDQFSAERR 270
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 38.4 bits (90), Expect = 0.005
Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+R++ A L+ + +LL DEP + LD +++ ++ ++ +R+ T+L H
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189
Query: 232 PSSELIDMFDKI----ILLADSRTAFIGSKDAALA 262
++ +I +++AD R A+ G D L+
Sbjct: 190 -----LEDAARIAPRSLVVADGRIAWDGPTDELLS 219
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 39.1 bits (92), Expect = 0.006
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 157 QHTRIGSSSITQKVV-LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 215
Q ++ ++S + LSGG +++ A LL +P +L+ DEPT G+D + ++ +++
Sbjct: 390 QRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLIN 449
Query: 216 ELTSQ 220
+L Q
Sbjct: 450 QLVQQ 454
Score = 36.8 bits (86), Expect = 0.028
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 37/190 (19%)
Query: 86 DGDIRVNGKPVEGKF-----RSACGFMYQHDLFSPSLTVYEHLY---------FMALLKL 131
+G+I G+ ++ R+ ++Q L+V E+++ M +
Sbjct: 61 EGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAM 120
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
R + LL +L L + T +G+ L G+++ + A L
Sbjct: 121 YLRAQK---------LLAQLKLDINPATPVGN--------LGLGQQQLVEIAKALNKQAR 163
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDKIILLADSR 250
LL+ DEPT L + L+ ++R+L + + C I +E+ + D I ++ D R
Sbjct: 164 LLILDEPTASLTESETAVLLDIIRDL---KAHGIACIYISHKLNEVKAISDTICVIRDGR 220
Query: 251 TAFIGSKDAA 260
IG++ AA
Sbjct: 221 H--IGTRPAA 228
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 38.3 bits (89), Expect = 0.006
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 23/133 (17%)
Query: 87 GDIRVNGKPVEGKFRSACGFM-YQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G I+++GK RS FM Y L L+ E+L+F+ L RR K AL
Sbjct: 66 GQIQIDGKTATRGDRSR--FMAYLGHLPGLKADLSTLENLHFLCGLH-GRRAKQMPGSAL 122
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTG 201
+G + +V LS G++KRL+ A L+ L L DEP
Sbjct: 123 ---------------AIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 202 LDSFSASKLIRMM 214
LD + + RM+
Sbjct: 168 LDLEGITLVNRMI 180
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 38.6 bits (90), Expect = 0.006
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LS G++KR++ A L DP +++ DEP LD L+ ++ L + KTV+ H
Sbjct: 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVATHD 197
Query: 232 PSSELIDMF----DKIILLADSRTAFIGSK 257
+D+ D++I+L + R G K
Sbjct: 198 -----VDLAAEWADQVIVLKEGRVLAEGDK 222
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 39.5 bits (92), Expect = 0.006
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 136 KAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
K YQ++ +LL +L ++ S T IG + LSGG+++R+S A + ++ + L
Sbjct: 728 KYYQQVLEACALLPDLEILPSGDRTEIGEKGVN----LSGGQKQRVSLARAVYSNADIYL 783
Query: 195 CDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253
D+P + +D+ + ++ + KT + H S + D II+++ + +
Sbjct: 784 FDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGKISE 841
Query: 254 IGSKDAALA 262
+GS L
Sbjct: 842 MGSYQELLQ 850
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 39.0 bits (91), Expect = 0.008
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE-- 216
T IG + LSGG++ R+S A + + + L D+P + LD+ R++ E
Sbjct: 774 TEIGEKGVN----LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE---RVVEECF 826
Query: 217 LTSQRKKT-VLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
L + KT VL T HQ ++ D ++ L D R F GS
Sbjct: 827 LGALAGKTRVLAT-HQ--VHVVPRADYVVALGDGRVEFSGS 864
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 38.3 bits (89), Expect = 0.008
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 87 GDIRVNGKPVEGK---FRSACGFMYQHD---LFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G+I +N P+ FRS M D +P L + + L F L+L+ ++ QR
Sbjct: 68 GEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFP--LRLNTDLEPEQR 125
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
I L +GL+ H +L+ G+++R++ A L+ P +++ DE
Sbjct: 126 RKQIFETLRMVGLL-PDHANYYPH------MLAPGQKQRVALARALILRPKIIIADEALA 178
Query: 201 GLDSFSASKLIRMMREL 217
LD S+LI +M EL
Sbjct: 179 SLDMSMRSQLINLMLEL 195
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 38.0 bits (89), Expect = 0.008
Identities = 40/163 (24%), Positives = 60/163 (36%), Gaps = 27/163 (16%)
Query: 113 FSPSLTVYEHLYFMALL------KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166
F P LT E++Y L+ ++D +V A ELG I
Sbjct: 100 FDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFA-------ELG-----------DFI 141
Query: 167 TQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
Q V S G RL+F+ +P +LL DE D+ K + + EL + K V
Sbjct: 142 DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIV 201
Query: 226 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQG 268
L + H + D+ I L + GS + + E
Sbjct: 202 LVS-HDL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDL 242
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 37.9 bits (89), Expect = 0.009
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 115 PSLTVYEHLYFMALLKLDRRVKA--YQRI-----ALINSLLIELGLMNSQHTRIGSSSIT 167
+LTV+E+L L D+ V A + R+ I +L +GL + G
Sbjct: 90 ENLTVFENL--ELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGL---- 143
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
LS G+++ L L+ DP LLL DEP G+
Sbjct: 144 ----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 38.2 bits (89), Expect = 0.010
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
+SGG+++R++ A L+ P +LL DEP + LD + L R MRE
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLD----ANLRRSMRE 177
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 38.7 bits (90), Expect = 0.011
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLD 203
SGG R R++ A L +P LLL DEPT LD
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
Score = 36.8 bits (85), Expect = 0.033
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 212
LSGG++ R++FA P +LL DEP+ LD + LI+
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ 668
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 37.8 bits (88), Expect = 0.011
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++R++ A + P +++ DE T+ LD +LI+ ++ + + TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH 199
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 38.5 bits (90), Expect = 0.011
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
+T +G Q LS G+++ L+ A L+ P +L+ DE T +DS + + + + +
Sbjct: 467 YTPLGE----QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAV 522
Query: 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
R+ T L I S +++ D I++L + G+ LA
Sbjct: 523 ---REHTTLVVIAHRLSTIVEA-DTILVLHRGQAVEQGTHQQLLA 563
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 37.4 bits (87), Expect = 0.016
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 221
SGG+ +R+ A L+ +P L++CDEP + LD ++++ ++++L QR
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL--QR 209
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 37.1 bits (86), Expect = 0.016
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 134 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV--VLSGGERKRLSFATELLTDPA 191
+ ++ A I LL +GL S K+ LSGG+ +R++ A L P
Sbjct: 120 SLDESEQKARIAELLDMVGL---------RSEDADKLPRQLSGGQLQRINIARALAVKPK 170
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
L++ DE + LD + ++ ++R+L
Sbjct: 171 LIVLDEAVSNLDMVLQAVILELLRKLQQA 199
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 36.8 bits (86), Expect = 0.017
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 172 LSGGERKRLSFA-----TELLTDPA-LLLCDEPTTGLDSFS-ASKLIRMMRELTSQRKKT 224
SGGE+ S E +L DEPTT LD + L ++ E SQ+
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175
Query: 225 VLCTIHQPSSELIDMFDKII 244
++ H EL+D D I
Sbjct: 176 LIVITHDE--ELVDAADHIY 193
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 37.1 bits (86), Expect = 0.018
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG +R + A + +P L++ DEP G D + L++++ EL S T + H
Sbjct: 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDA 259
E++ + D ++AD + GS A
Sbjct: 204 -VPEVLSIADHAYIVADKKIVAHGSAQA 230
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 37.4 bits (87), Expect = 0.020
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V+LSGG+++R+S A LL + +L+ D+ + +D + +++ +R+ R TV+ +
Sbjct: 450 VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGR--TVIISA 507
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
H+ S+ L + +I+++ A G+ D
Sbjct: 508 HRLSA-LTEA-SEILVMQHGHIAQRGNHDQLAQ 538
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 37.0 bits (85), Expect = 0.021
Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 11/192 (5%)
Query: 55 ILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 114
I ++ E+ D E + + + + + + K R G L +
Sbjct: 68 IRYRYGFELDKEDILEELLYEYRKGEELLFERERSKESFEKSPEKKRELRGLREVLLLLN 127
Query: 115 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV---- 170
SL+ + L + +L ++ L N IEL L++ S + + +
Sbjct: 128 LSLSSFLLLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLI 187
Query: 171 -VLSGGERKRLSFATELLTD---PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
+S G ++ L+ LL+ +LLL DEP GL KL+ +++EL S++ ++
Sbjct: 188 KGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKEL-SEKGAQLI 246
Query: 227 CTIHQPSSELID 238
T H S L+D
Sbjct: 247 FTTH--SPLLLD 256
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 36.9 bits (85), Expect = 0.023
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
++ L E+GL +H + LSGG+ + ++ A L +P L+ DE T+ L
Sbjct: 116 RVDRALAEIGLEKYRHRSPKT--------LSGGQGQCVALAGILTMEPECLIFDEVTSML 167
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
D S ++ +++L ++ KT++ H + E + D+II++ + G + L+
Sbjct: 168 DPDSGIAVLERIKKL-HEKGKTIVYITH--NLEELHDADRIIVMDRGKIVLEGEPENVLS 224
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 36.5 bits (85), Expect = 0.027
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++R++ A L P +++ DE T+ LD +++ +R+L Q+ TVL H
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH 199
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 36.4 bits (84), Expect = 0.027
Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 27/145 (18%)
Query: 87 GDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G I+ G+P+E + ++ Q ++ V+ +L R
Sbjct: 53 GSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTL--------HQPDKTRTE 104
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-----TDPA--LLLC 195
L+N + L L + S Q LSGGE +R+ A +L +PA LLL
Sbjct: 105 LLNDVAGALALDDKLG-----RSTNQ---LSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156
Query: 196 DEPTTGLDSFSASKLIRMMRELTSQ 220
DEP LD S L R++ L Q
Sbjct: 157 DEPMNSLDVAQQSALDRLLSALCQQ 181
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 37.2 bits (87), Expect = 0.030
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
HT I T LSGG+R+RL A L+ P +LL DE T+ LD+ + + ++ E
Sbjct: 579 HTVISEGGGT----LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA----IVSES 630
Query: 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
+ K T + H+ S+ I D+I +L R G+ D +A
Sbjct: 631 LERLKVTRIVIAHRLST--IRNADRIYVLDAGRVVQQGTYDELMA 673
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 36.7 bits (85), Expect = 0.030
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH- 230
L+ GE +++ A L P LL+ DEPT ++ + +++ R++ L T+L H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
Query: 231 -QPSSELID 238
Q S+ D
Sbjct: 219 LQMLSQWAD 227
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 35.0 bits (80), Expect = 0.035
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR-----ELTSQRKK 223
K SG R RL+ A P +L+ DE T+ LD+ + L+ + L S++
Sbjct: 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNL 117
Query: 224 TVLCTIHQP----SSELIDMFDKIILL 246
TV+ T + + L FD+ I+L
Sbjct: 118 TVILTTNDEKDLGPALLRRRFDRRIVL 144
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 36.1 bits (84), Expect = 0.036
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 33/165 (20%)
Query: 87 GDIRVNGKPVEGKFRSACGFM-----YQH-DLFSPSLTVYEHL-----------YFMALL 129
G I + G+ +EG M +QH LF +TV E+L F LL
Sbjct: 60 GTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFR-EMTVIENLLVAQHQQLKTGLFSGLL 118
Query: 130 KLD--RRV--KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185
K RR +A R A + L +GL+ + + G+ L+ G+++RL A
Sbjct: 119 KTPAFRRAESEALDRAA---TWLERVGLLEHANRQAGN--------LAYGQQRRLEIARC 167
Query: 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
++T P +L+ DEP GL+ +L ++ EL ++ TVL H
Sbjct: 168 MVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH 212
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 36.8 bits (85), Expect = 0.037
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LSGGER+RL+ A +L + +L+ DE T+ LD
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALD 503
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 35.9 bits (83), Expect = 0.045
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
L+L+ ++ QR I L ++GL+ + +L+ G+++RL A L+
Sbjct: 114 LRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPH-------MLAPGQKQRLGLARALIL 166
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMREL 217
P +++ DE LD S+LI +M EL
Sbjct: 167 RPKVIIADEALASLDMSMRSQLINLMLEL 195
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 36.1 bits (83), Expect = 0.053
Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 20/182 (10%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY-FMA 127
S L +LF I +G+I ++G V R DLFS ++ + F
Sbjct: 382 STLAKLFCGLYIPQ---EGEILLDGAAVSADSRDD-----YRDLFS---AIFADFHLFDD 430
Query: 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187
L+ D A A L L + + G S T LS G++KRL+ L
Sbjct: 431 LIGPDEGEHASLDNA--QQYLQRLEIADKVKIEDGGFSTT--TALSTGQQKRLALICAWL 486
Query: 188 TDPALLLCDEPTTGLD-SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
D +LL DE D +F ++ +L ++ KT++ H + ++ D+II L
Sbjct: 487 EDRPILLFDEWAADQDPAFKRFFYEELLPDL-KRQGKTIIIISH--DDQYFELADQIIKL 543
Query: 247 AD 248
A
Sbjct: 544 AA 545
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 35.8 bits (83), Expect = 0.053
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 22/146 (15%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQHDL--FSPSLTVYEHLY--FMALLKLDRRV 135
G++ G+P+ FR ++Q + +P TV E + LL LD+
Sbjct: 67 GNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA- 125
Query: 136 KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 195
+R+A + +L + L +S + LSGG+ +R+ A L +P LL+
Sbjct: 126 ---ERLARASEMLRAVDLDDSVLDKRPPQ-------LSGGQLQRVCLARALAVEPKLLIL 175
Query: 196 DEPTTGLDSFSASKLIRMMRELTSQR 221
DE + LD + +IR++++L Q
Sbjct: 176 DEAVSNLDLVLQAGVIRLLKKLQQQF 201
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 35.4 bits (81), Expect = 0.058
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRE 216
T IG I LSGG+R+R+ A L + ++ D+P + LD + L++ + +
Sbjct: 131 QTEIGERGIN----LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILK 186
Query: 217 LTSQRKKTVLCTIHQ 231
K+T++ H+
Sbjct: 187 FLQDDKRTLVLVTHK 201
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 35.4 bits (82), Expect = 0.063
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE +R++ A L D DEP++ LD R++REL ++ VL H
Sbjct: 140 LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL-AEDDNYVLVVEHD 198
Query: 232 PSSELIDMFDKII 244
+ ++D I
Sbjct: 199 LA--VLDYLSDYI 209
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 35.7 bits (82), Expect = 0.084
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 118 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177
TV E++ F + + +R +A AL + L + G T IG + +SGG++
Sbjct: 694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPG---RDLTEIGERGVN----ISGGQK 746
Query: 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRELTSQRKKTVLCTIHQPSSE 235
+R+S A + ++ + + D+P + LD+ A ++ M EL + + V +H
Sbjct: 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLH----- 801
Query: 236 LIDMFDKIILLAD 248
+ + D+IIL+++
Sbjct: 802 FLPLMDRIILVSE 814
Score = 32.3 bits (73), Expect = 1.1
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
S G+R+ LS A LL +L+ DE T +D + S + R +RE + T+L H+
Sbjct: 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE--EFKSCTMLVIAHR 1429
Query: 232 PSSELIDMFDKIILLA 247
++ +ID DKI++L+
Sbjct: 1430 LNT-IIDC-DKILVLS 1443
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 35.5 bits (82), Expect = 0.091
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 171 VLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
V SGGE R+ A +++ L+ DE G+ +A + + + +L+ + VL
Sbjct: 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS--ERHQVL 497
Query: 227 CTIHQP 232
C H P
Sbjct: 498 CVTHLP 503
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 35.4 bits (82), Expect = 0.094
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 17/62 (27%)
Query: 172 LSGGERK--RLSFAT---ELLTD--------PALLLCDEPTTGLDSFSAS---KLIRMMR 215
LSGGER LS LL + P L+L DEPT LDS S L+ MR
Sbjct: 782 LSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLIL-DEPTVFLDSGHVSQLVDLVESMR 840
Query: 216 EL 217
L
Sbjct: 841 RL 842
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 35.4 bits (82), Expect = 0.11
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK-- 223
LSGGER RL+ + L + LL+ DEPT LD KL+ +M +K
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIM---ERYLRKIP 845
Query: 224 TVLCTIHQPSSELIDMFDKII 244
V+ H EL D D +I
Sbjct: 846 QVIIVSH--DEELKDAADYVI 864
>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown].
Length = 858
Score = 35.2 bits (81), Expect = 0.11
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
Query: 432 YSSGLYSAFQFYLSYILSS----------LPGLIIQAVLFTVILYWISGLRNSLSVFLMA 481
++SGL F LSY L S L + L T+I + + GL +S ++
Sbjct: 69 FTSGLGGNFYALLSYYLGSFLMPLVFFFDLTSMPDAIYLPTLIKFGLIGLSAFISFVVLF 128
Query: 482 VLICILIINVATSCGIMFSLAFSSVST 508
IL+ ++ ++L VS
Sbjct: 129 QKFSILLKLRIST---FYALMSFGVSQ 152
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 34.4 bits (79), Expect = 0.12
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
LSGG+ +R++ A + +P +L DEP GLD +++++ ++
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKD 190
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 34.2 bits (79), Expect = 0.15
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 173 SGGERKR---LSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKTVLCT 228
SGGE+KR L A L D L + DE +GLD A K+I + +L + +L T
Sbjct: 153 SGGEKKRNEILQMA---LLDSELAILDETDSGLD-IDALKIIAEGINKLMTSENSIILIT 208
Query: 229 IHQPSSELIDMF--DKIILLADSRTAFIGSKDAALAFLESQGYPC 271
+Q L+D D + ++ + + G + A LE +GY
Sbjct: 209 HYQ---RLLDYIKPDYVHVMQNGKIIKTGDAELAKE-LEKKGYDW 249
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 34.3 bits (79), Expect = 0.16
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++R++ A L P ++ DEPT LD +++ ++EL + T++ H
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 34.5 bits (79), Expect = 0.18
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 172 LSGGERKRLSFATE------LLTDPALLLCDEPTTGLD 203
LSGGE+ ++FA L D +LL+ DEPT LD
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLD 839
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 34.4 bits (79), Expect = 0.19
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 87 GDIRVNGKPVEGK----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G+I ++GKPV + +R LFS + Y HL F LL +
Sbjct: 378 GEILLDGKPVSAEQLEDYRK---------LFSAVFSDY-HL-FDQLLGPE----GKASPQ 422
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
LI L L L + G S + LS G++KRL+ LL + +L+ DE
Sbjct: 423 LIEKWLQRLELAHKTSLNDGRFSNLK---LSTGQKKRLALLLALLEERDILVLDE 474
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 33.7 bits (78), Expect = 0.25
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 171 VLSGGERKRLSFATELLT-----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
+ SGGE RL A + + P L+ DE TG+ A + + ++EL+ R V
Sbjct: 170 IASGGELSRLMLALKAILARKDAVPTLIF-DEIDTGISGEVAQAVGKKLKELS--RSHQV 226
Query: 226 LCTIHQP 232
LC H P
Sbjct: 227 LCITHLP 233
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 33.9 bits (78), Expect = 0.30
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 22/137 (16%)
Query: 118 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177
TV +++ F + +R +A AL + L + L T IG + V +SGG++
Sbjct: 694 TVRDNILFGSPFDPERYERAIDVTALQHDLDL---LPGGDLTEIGE----RGVNISGGQK 746
Query: 178 KRLSFATELLTDPALLLCDEPTTGLDSFSA----SKLIRMMRELTSQRKKTVLCT--IHQ 231
+R+S A + ++ + + D+P + LD+ K I+ EL + K VL T +H
Sbjct: 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK--DEL--RGKTRVLVTNQLH- 801
Query: 232 PSSELIDMFDKIILLAD 248
+ D+IIL+ +
Sbjct: 802 ----FLSQVDRIILVHE 814
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 33.3 bits (77), Expect = 0.33
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 215
LSGG+R+R++ ++ +PA+ L DEP + LD +KL MR
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD----AKLRVQMR 174
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 32.6 bits (74), Expect = 0.38
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK--TVLCT 228
+LS G++++++ ++ L L DEP LD S L+ ++ ++ R K VL T
Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS---LLTIITKIQEHRAKGGAVLLT 183
Query: 229 IHQ 231
HQ
Sbjct: 184 SHQ 186
>gnl|CDD|232845 TIGR00145, TIGR00145, FTR1 family protein. A characterized member
from yeast acts as oxidase-coupled high affinity iron
transporter. Note that the apparent member from E. coli
K12-MG1655 has a frameshift by homology with member
sequences from other species [Unknown function,
General].
Length = 283
Score = 32.8 bits (75), Expect = 0.40
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 14/115 (12%)
Query: 446 YILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSL---- 501
YI ++ GLI+ AV+ V+LY G R SL +F + +L I G
Sbjct: 153 YIGPAVAGLIV-AVVVGVLLYRG-GSRLSLKIFFILSSSLLLFIAAGLLGGGNHRFNLAG 210
Query: 502 ------AFSSVSTAMACLVPFDYTLM--ITAGVFYKLSSLPPYFVWIRYLSWLEY 548
+++ C D+ L + ++Y SS W+ + L
Sbjct: 211 GGDGFGSYNFDKAVSCCNPELDWLLFNGLLGWIYYLSSSYSYNMYWLVLIIVLSL 265
>gnl|CDD|217354 pfam03073, TspO_MBR, TspO/MBR family. Tryptophan-rich sensory
protein (TspO) is an integral membrane protein that acts
as a negative regulator of the expression of specific
photosynthesis genes in response to oxygen/light. It is
involved in the efflux of porphyrin intermediates from
the cell. This reduces the activity of
coproporphyrinogen III oxidase, which is thought to lead
to the accumulation of a putative repressor molecule
that inhibits the expression of specific photosynthesis
genes. Several conserved aromatic residues are necessary
for TspO function: they are thought to be involved in
binding porphyrin intermediates. In, the rat
mitochondrial peripheral benzodiazepine receptor (MBR)
was shown to not only retain its structure within a
bacterial outer membrane, but also to be able to
functionally substitute for TspO in TspO- mutants, and
to act in a similar manner to TspO in its in situ
location: the outer mitochondrial membrane. The
biological significance of MBR remains unclear, however.
It is thought to be involved in a variety of cellular
functions, including cholesterol transport in
steroidogenic tissues.
Length = 147
Score = 31.8 bits (73), Expect = 0.46
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 455 IIQAVLFTVI-----LYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTA 509
+ VL+ ++ L W +G +A+ L +N S + F L S A
Sbjct: 42 PVWTVLYILMGIAAYLVWRAGPGTKRRKLALALFALQLALNALWSP-LFFGL--HSPGLA 98
Query: 510 MACLVPFDYTLMITAGVFYKLSS-----LPPYFVWIRYLSWLEYS 549
+ ++ ++ T F+++S L PY +W+ + ++L YS
Sbjct: 99 LIVILLLWLLVLATIVAFWRVSRLAALLLVPYLLWVSFATYLNYS 143
>gnl|CDD|236781 PRK10869, PRK10869, recombination and repair protein; Provisional.
Length = 553
Score = 32.2 bits (74), Expect = 0.81
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 12/69 (17%)
Query: 171 VLSGGERKRLSFATELLT-----DPALLLCDEPTTGLDSFSASKLIRMMREL--TSQRKK 223
V SGGE R++ A +++T PAL+ DE G+ +A+ + +++R+L ++Q
Sbjct: 430 VASGGELSRIALAIQVITARKMETPALIF-DEVDVGISGPTAAVVGKLLRQLGESTQ--- 485
Query: 224 TVLCTIHQP 232
V+C H P
Sbjct: 486 -VMCVTHLP 493
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 32.3 bits (74), Expect = 0.87
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 411 FSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISG 470
+ ++ L+ + +S A Q+ LS L G + + I
Sbjct: 79 IAAWFNWLAYILGL--------ASSSSVAAQYLLSAFFPDLVGNTWLTYGIAIAILIIFA 130
Query: 471 LRNSLSVFLMAVL-ICILIINVATSCGIMFSLAF 503
L N + A + + I+ + ++ L
Sbjct: 131 LINIRGIKESAKIQNILGIVKLLLPLILIILLGL 164
>gnl|CDD|227668 COG5377, COG5377, Phage-related protein, predicted endonuclease
[DNA replication, recombination, and repair].
Length = 319
Score = 31.4 bits (71), Expect = 1.2
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 277 PADFLIKSLAVTT-------NDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTYD 329
A K+ AV T + L+ +KR E DFAKE++ + + Y
Sbjct: 211 LALRYAKTEAVKTVDLPHFYAEALAVLHSIKRDISELE--DFAKEIENRLKNELKEAEYG 268
Query: 330 FLADF 334
F AD+
Sbjct: 269 FTADY 273
>gnl|CDD|223383 COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion
transport and metabolism].
Length = 326
Score = 31.0 bits (71), Expect = 1.6
Identities = 15/83 (18%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 444 LSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAF 503
S++LS + G ++ +L++++ I G V + ++ I+ ++ + F+
Sbjct: 137 ASWVLSPILGGVLAYLLYSLLRRLIVGKDGKRKVERIFRILLII-----SASLVAFAHGA 191
Query: 504 SSVSTAMACLVPFDYTLMITAGV 526
+ V+ A+ LV + + V
Sbjct: 192 NDVANAIGPLVAVLISSLPPFWV 214
>gnl|CDD|226007 COG3476, COG3476, Tryptophan-rich sensory protein (mitochondrial
benzodiazepine receptor homolog) [Signal transduction
mechanisms].
Length = 161
Score = 30.0 bits (68), Expect = 2.3
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 455 IIQAVLFTVI-----LYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTA 509
+ VL+ +I L W G S LM + + LI+N A S I F L S+ A
Sbjct: 51 PVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYLLQLILNFAWSP-IFFGLR--SLGAA 107
Query: 510 MACLVPFDYTLMITAGVFYKLSS-----LPPYFVWI---RYLSW 545
+ ++ +++ + + +S L PY +W YL++
Sbjct: 108 LIIILLLWIAVLVLTIIVWPISKTASLLLIPYLLWSPFATYLNF 151
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 30.5 bits (69), Expect = 2.4
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 172 LSGGERKRLSFATELLTD--PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
LS G + L+ AT LL+ P LLL DEP T L L +MR ++ ++ V+ +
Sbjct: 271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMR--SAAKRSQVIVST 328
Query: 230 HQPSSELIDMF 240
H S L++
Sbjct: 329 H--SPRLLNAV 337
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 30.6 bits (70), Expect = 2.4
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 171 VLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
V SGGE R+ A +++ D L+ DE TG+ A + + +R L S+ + VL
Sbjct: 431 VASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRL-SEHHQ-VL 488
Query: 227 CTIHQP 232
C H P
Sbjct: 489 CVTHLP 494
>gnl|CDD|223581 COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha
subunit - helicase superfamily I member [DNA
replication, recombination, and repair].
Length = 696
Score = 30.5 bits (69), Expect = 2.8
Identities = 25/129 (19%), Positives = 37/129 (28%), Gaps = 12/129 (9%)
Query: 89 IRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLL 148
G P R + + FS L A + L+
Sbjct: 194 ALNLGIPGNSPERIRAAALALLEEFS--LISGGPGTG------KTTTIAKLLLKLLEQPE 245
Query: 149 IE-LGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 207
IE L +Q + + T K L ER L A L+ L + D A
Sbjct: 246 IEVLKSGLAQRISL--LAPTGKAALRLTERGSLRLAERLIARAELRILDSLFVA-LKIRA 302
Query: 208 SKLIRMMRE 216
+ R++ E
Sbjct: 303 GTVHRLLGE 311
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 27.9 bits (63), Expect = 3.2
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 14/58 (24%)
Query: 172 LSGGERKRLSFATELL-------------TDPALLLCDEPTTGLDSFSASKLIRMMRE 216
LSGGE K++ L P L+ DE LD + L+ ++RE
Sbjct: 23 LSGGE-KQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
>gnl|CDD|165411 PHA03139, PHA03139, helicase-primase primase subunit; Provisional.
Length = 860
Score = 30.3 bits (68), Expect = 3.6
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 536 YFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDGAQVINNMNFSPDNLYPN 595
++++I Y N AL T++ N+T +D L G Q NM+ ++L+ N
Sbjct: 251 HYIYIAY-------NTALETTKFVNYCNLTSYD----SNLPIGQQCQRNMHILGNSLHEN 299
Query: 596 LIAMVVLYF 604
L+ ++ YF
Sbjct: 300 LLCIMKQYF 308
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 30.3 bits (69), Expect = 3.9
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
G+I ++GKPV + Y+ LFS T + HL F LL + + AL+
Sbjct: 377 SGEILLDGKPVTAEQPED----YRK-LFSAVFTDF-HL-FDQLLGPEGKPAN---PALVE 426
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
L L + + G S + LS G++KRL+ L + +LL DE
Sbjct: 427 KWLERLKMAHKLELEDGRISNLK---LSKGQKKRLALLLALAEERDILLLDE 475
>gnl|CDD|130314 TIGR01247, drrB, daunorubicin resistance ABC transporter membrane
protein. This model describes daunorubicin resistance
ABC transporter, membrane associated protein in bacteria
and archaea. The protein associated with effux of the
drug, daunorubicin. This transport system belong to the
larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. In eukaryotes proteins of similar function
include p-gyco proteins, multidrug resistance protein
etc [Transport and binding proteins, Other].
Length = 236
Score = 29.7 bits (67), Expect = 4.2
Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 447 ILSSLPGLIIQAVLFTVILYWISGLRNSLSV-FLMAVLICILIINVATSCGIMFSLAFSS 505
++ + G II A+ F V + SG+ +L + F++ V + L + +A +
Sbjct: 102 TVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIA-----ARMDSMEG 156
Query: 506 VSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTIT 556
M+ L+ + +G FY ++++P + + ++ L Y+ +
Sbjct: 157 FQIIMSMLM---LPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYY 204
>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+
pyrophosphatase is an transmembrane proton pump involved
in establishing the H+ electrochemical potential
difference between the vacuole lumen and the cell
cytosol. Vacuolar-type H(+)-translocating inorganic
pyrophosphatases have long been considered to be
restricted to plants and to a few species of
photo-trophic bacteria. However, in recent
investigations, these pyrophosphatases have been found
in organisms as disparate as thermophilic Archaea and
parasitic protists.
Length = 669
Score = 30.1 bits (69), Expect = 4.7
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 462 TVILYWISGLRNSL-SVFLMAVLICILIINVATSCGIMFSL-AFSSVSTAMACLVPF 516
T I ISGL + S ++I I+ V+ L + + M
Sbjct: 360 TNI---ISGLAVGMESTAWPVLVIAAAIL-VSYYLAGGSGLYGIALAAVGMLSTAGI 412
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 29.4 bits (66), Expect = 4.8
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
VLS G ++ + A +L+ +LL DEP+ LD + + + +++
Sbjct: 138 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQ 183
>gnl|CDD|224596 COG1682, TagG, ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 263
Score = 29.5 bits (67), Expect = 4.9
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 442 FYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIIN---VATSCGIM 498
++ LS L +I ++ + L + S L+ + +LI+ + +
Sbjct: 110 LPVARTLSRLFNFLIHLIIILIFLIILGVE-PSWHWLLLLPALLLLILFSVGLGLILASL 168
Query: 499 FSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYL 543
F + + ++ L + + Y +S+LP + L
Sbjct: 169 GVR-FRDLGQILGVVLQL---LFFLSPIIYPVSNLPEQLRELVLL 209
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 29.4 bits (66), Expect = 5.3
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCT 228
V SGGE+KR + +P L + DE +GLD A K++ + L ++ ++ T
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDALKIVADGVNSLRDGKRSFIIVT 202
Query: 229 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF-LESQGY 269
+Q + I D + +L R + S D L LE QGY
Sbjct: 203 HYQRILDYIKP-DYVHVLYQGR--IVKSGDFTLVKQLEEQGY 241
>gnl|CDD|183669 PRK12670, PRK12670, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 99
Score = 27.8 bits (62), Expect = 5.5
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 471 LRNSLSVFL--MAVLICILIINVATSCGIMFSLAFSS 505
++ SVF + +LIC+L I T+ + A+ S
Sbjct: 54 MQCGFSVFTVKVLLLICLLWITSTTASYALARSAYKS 90
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 29.5 bits (66), Expect = 6.7
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 541 RYLSWLEYSNEALTITQWQGVTNITCF-----DNPDLPCLEDGAQVINN---MNFSPDNL 592
R W + NE L + + +G + D+PDLP +++G Q ++ + S N
Sbjct: 227 RMEEWKKKQNEKLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINP 286
Query: 593 YPNLIA--MVVLYFAFH 607
Y +I +V+L FH
Sbjct: 287 YRMIIILRLVILGLFFH 303
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 29.0 bits (65), Expect = 7.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
S G R +L F+ + +P +L+ DE + D A K + + E Q KT+ H
Sbjct: 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ-NKTIFFVSH 201
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.407
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,486,546
Number of extensions: 3148345
Number of successful extensions: 4962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4776
Number of HSP's successfully gapped: 566
Length of query: 622
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 519
Effective length of database: 6,369,140
Effective search space: 3305583660
Effective search space used: 3305583660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.1 bits)