RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2519
(622 letters)
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 94.5 bits (236), Expect = 3e-22
Identities = 31/161 (19%), Positives = 68/161 (42%), Gaps = 20/161 (12%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
G+I NG P+ K + F+ + + ++V ++L +A L + K I
Sbjct: 63 KGEIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE-----IM 116
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
L + +++ ++G LS G +R+ A+ LL + + + D+P +D
Sbjct: 117 DALESVEVLD-LKKKLGE--------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 167
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
S K+++ + E+ ++ ++ + E + D L
Sbjct: 168 SKHKVLKSILEILKEKGIVIISS-----REELSYCDVNENL 203
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 92.2 bits (230), Expect = 3e-21
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 15/148 (10%)
Query: 86 DGDIRVNGKPVE---GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G + V GK V + R ++ + ++ E+L F+A + +
Sbjct: 69 SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEE 125
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
++ GL R+ + S G ++L A L+ +P L + DEPT+GL
Sbjct: 126 MVERATEIAGLGEKIKDRVST--------YSKGMVRKLLIARALMVNPRLAILDEPTSGL 177
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIH 230
D +A ++ +++++ SQ T+L + H
Sbjct: 178 DVLNAREVRKILKQA-SQEGLTILVSSH 204
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 84.6 bits (210), Expect = 2e-18
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 23/188 (12%)
Query: 87 GDIRVNGKPVEGKF-------RSACGFMYQ--HDLFSPSLTVYEHLY--FMALLKLDRRV 135
G + + GK GK R GF+ + F V + + + + + +
Sbjct: 76 GTVNLFGKMP-GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDI 134
Query: 136 KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 195
R + LL +G+ IG LS GE++R+ A L+ P +L+
Sbjct: 135 DDEIR-NEAHQLLKLVGMSAKAQQYIGY--------LSTGEKQRVMIARALMGQPQVLIL 185
Query: 196 DEPTTGLDSFSASKLIRMMRELTSQRKK-TVLCTIHQPSSELIDMFDKIILLADSRTAFI 254
DEP GLD + L+ ++ L+ ++ H E+ F KI+LL D ++
Sbjct: 186 DEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQ 244
Query: 255 GSKDAALA 262
G+ + L
Sbjct: 245 GAVEDILT 252
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 71.2 bits (175), Expect = 6e-14
Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 24/176 (13%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQH-DLFSPSLTVYEHLYF-MALLKLDRRVKAYQRIAL 143
G+I +NG V K R+ + + + +TV + +Y L LDR L
Sbjct: 57 SGNIFINGMEVR-KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD--------L 107
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+L L L R + + LS G+ + + L + P ++ DEP +D
Sbjct: 108 FLEMLKALKLGEEILRR----KLYK---LSAGQSVLVRTSLALASQPEIVGLDEPFENVD 160
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL-ADSRTAFIGSKD 258
+ + R ++E K + H+ L + +R S
Sbjct: 161 AARRHVISRYIKEY----GKEGILVTHE-LDMLNLYKEYKAYFLVGNRLQGPISVS 211
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 68.9 bits (169), Expect = 2e-12
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 17/135 (12%)
Query: 94 KPVEGKFRSACGFMY--QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL 151
+P EGK Y Q+ TVYE L + KL+ LL L
Sbjct: 407 EPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSN-------FYKTELLKPL 459
Query: 152 GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI 211
G+++ + LSGGE +R++ A LL D + L DEP+ LD +
Sbjct: 460 GIIDLYDRNVED--------LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 212 RMMRELTSQRKKTVL 226
R +R L + +KT L
Sbjct: 512 RAIRHLMEKNEKTAL 526
Score = 61.9 bits (151), Expect = 3e-10
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
LSGGE +R++ A LL DEP++ LD K+ R++R L + K VL
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL-ANEGKAVL 282
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 66.4 bits (163), Expect = 2e-12
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+ + A + ++ L+L DEPT+ LD + ++ ++ +L + TV+ T HQ
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
Query: 232 PSSELIDMFDKIILLADSRTAF 253
P+ + + +K +LL F
Sbjct: 189 PNQVV-AIANKTLLLNKQNFKF 209
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 68.1 bits (167), Expect = 4e-12
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
LSGGE +R++ L + L DEP+ LDS +++R KKT
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
Score = 63.5 bits (155), Expect = 1e-10
Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 10/121 (8%)
Query: 133 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192
+++ + + + L L + I + LSGGE +R + + + +
Sbjct: 191 LKLRMEKSPEDVKRYIKILQL-----ENVLKRDIEK---LSGGELQRFAIGMSCVQEADV 242
Query: 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252
+ DEP++ LD +++R L K V+C H S L + D + ++ +
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLL-APTKYVICVEHDL-SVLDYLSDFVCIIYGVPSV 300
Query: 253 F 253
+
Sbjct: 301 Y 301
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 65.3 bits (160), Expect = 4e-12
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 87 GDIRVNGKPVEG-------KFRSAC-GFMYQ--HDLFSPSLTVYEHLYFMALLKLDRRVK 136
G++ ++ K R GF++Q + + P LT E++ + K +
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI--PLLTALENVELPLIFKYRGAMS 117
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
+R L L R + Q LSGG+++R++ A L +P ++L D
Sbjct: 118 GEERRKRALECLKMAELEE----RFANHKPNQ---LSGGQQQRVAIARALANNPPIILAD 170
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
+PT LDS + K+++++++L + KTV+ H + ++II L D
Sbjct: 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKD 220
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 67.7 bits (166), Expect = 5e-12
Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 25/162 (15%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
+G + + + + Q + TV + L+ +
Sbjct: 322 EGSVTPEKQIL--------SYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFE 367
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
+ L L + + LSGGE ++L A L + L + D+P++ LD
Sbjct: 368 EVTKRLNLHRLLESNVND--------LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILL 246
+ + ++ +T +RK H + D D+II+
Sbjct: 420 ERYIVAKAIKRVTRERKAVTFIIDHDL--SIHDYIADRIIVF 459
Score = 63.5 bits (155), Expect = 1e-10
Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 22/154 (14%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEH---------LYFMALLKLDRRVK 136
D + +V V +FR + Y +L+S L + + ++ ++
Sbjct: 55 DPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID 114
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
+ + LL L N LSGG +RL A LL + + + D
Sbjct: 115 ERGKKDEVKELLNMTNLWNK--------DANI---LSGGGLQRLLVAASLLREADVYIFD 163
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+P++ LD + + +REL + K V+ H
Sbjct: 164 QPSSYLDVRERMNMAKAIREL--LKNKYVIVVDH 195
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 65.6 bits (161), Expect = 5e-12
Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 35/185 (18%)
Query: 87 GDIRVNGKPVEGK------FRSACGFMYQ---HDLFSPSLTVYEHLYF------MALLKL 131
G I + KP++ R + G ++Q + LFS +VY+ + F + ++
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA--SVYQDVSFGAVNMKLPEDEI 120
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
+RV L G+ + LS G++KR++ A L+ +P
Sbjct: 121 RKRVDNA---------LKRTGI-----EHLKDKPTHC---LSFGQKKRVAIAGVLVMEPK 163
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251
+L+ DEPT GLD S++++++ E+ + T++ H + D + ++ + R
Sbjct: 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRV 222
Query: 252 AFIGS 256
G+
Sbjct: 223 ILQGN 227
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 64.4 bits (158), Expect = 7e-12
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 86 DGDIRVNGKPVEG-------KFRS-ACGFMYQ-HDLFSPSLTVYEH----LYFMALLKLD 132
+G + + GK V+ R+ GF++Q H L P LT E+ + M K +
Sbjct: 58 EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI-PELTALENVIVPMLKMGKPKKE 116
Query: 133 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192
+ + LL ELGL + + LSGGE++R++ A L +P L
Sbjct: 117 AKERGEY-------LLSELGLGDKLSRKPYE--------LSGGEQQRVAIARALANEPIL 161
Query: 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
L DEPT LDS + +++ + ++ V+ T H+ EL ++ + + + D
Sbjct: 162 LFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVT-HER--ELAELTHRTLEMKD 214
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 62.6 bits (153), Expect = 4e-11
Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 31/187 (16%)
Query: 87 GDIRVNGKPVEGKFRSA----CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G I+ G+P+E + ++ Q + V+ L L + R
Sbjct: 54 GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH------YLTLHQH--DKTRTE 105
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA-------TELLTDPALLLC 195
L+N + L L + LSGGE +R+ A + LLL
Sbjct: 106 LLNDVAGALALDDKLGRSTNQ--------LSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157
Query: 196 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFI 254
DEP LD S L +++ L+ Q+ ++ + H + + LL +
Sbjct: 158 DEPMNSLDVAQQSALDKILSALS-QQGLAIVMSSHDLN--HTLRHAHRAWLLKGGKMLAS 214
Query: 255 GSKDAAL 261
G ++ L
Sbjct: 215 GRREEVL 221
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 61.1 bits (149), Expect = 2e-10
Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 22/190 (11%)
Query: 87 GDIRVNGKPVEGK-FRSACGFMYQ---HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
GD+ +G+ +G R G +Q F+ V++ + F A+ +
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE--RVFDEVAF-AVKNFYPDRDPVPLV- 117
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTT 200
+ +GL S +V LSGGE++R++ A+ ++ +P +L+ DEP
Sbjct: 118 --KKAMEFVGL--------DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260
GLD + L+R++ + KTV+ H +I+ D++++L + F G++
Sbjct: 168 GLDREGKTDLLRIVEKW-KTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEF 225
Query: 261 LAFLESQGYP 270
L + + +
Sbjct: 226 LEKYDPRFFT 235
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 2e-10
Identities = 91/508 (17%), Positives = 144/508 (28%), Gaps = 179/508 (35%)
Query: 154 MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM 213
M++ TR +T LS G S LL P F AS
Sbjct: 1 MDAYSTR----PLT----LSHG-----SLEHVLLV-PTASF----------FIAS----- 31
Query: 214 MRELTSQRKKTVLCTIHQPSSELIDMFDKII----LLADSRTAFIGSKDAALAFLESQGY 269
Q ++ + +P+ D+ L+ F+G ++ S
Sbjct: 32 ------QLQEQFNKILPEPTEGFAAD-DEPTTPAELVGK----FLG-------YVSSL-- 71
Query: 270 PCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTYD 329
++ V D++ L EF + + D+ H
Sbjct: 72 ------------VEPSKVGQFDQV-----LNLCLTEFE-NCYLEGNDI------HALAAK 107
Query: 330 FLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVAT---ALMCGLCFAG 386
L + ++ +K +R D S LF+ V L+ F G
Sbjct: 108 LLQENDTTLVKTKELIKNYIT--ARIMAKRPFDKKSN-SALFRAVGEGNAQLV--AIFGG 162
Query: 387 SIDLTQRGVQSVQGALFIMVTE-----NTFSP--------MYSVLSQFPDMLPLFHREYS 433
QG E T+ LS+ + ++
Sbjct: 163 ------------QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 434 SGLYSAFQF-----------YLSYILSSLPGL-IIQAVLFTVILYWISGLR-NSLSVFLM 480
GL + ++ YL I S P + +IQ + V + G L +L
Sbjct: 211 QGL-NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA-KLLGFTPGELRSYLK 268
Query: 481 AVLICILIINVATSCGIMFSLAFSSVST--AMACLVPFDYTLMITAGV----FYKLSSLP 534
S G++ ++A + + + V T++ GV Y +SLP
Sbjct: 269 GATGH--------SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 535 PYFVWIRYLSWLEYSNEA-------------LTITQWQGVTNITCFDNPDLPCLEDGAQV 581
P S LE S E LT Q Q N T N LP
Sbjct: 321 P--------SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT---NSHLP--AGKQVE 367
Query: 582 INNMNFSPDNLYPNLIAMVV------LY 603
I+ +N N +VV LY
Sbjct: 368 ISLVN-GAKN-------LVVSGPPQSLY 387
Score = 47.7 bits (113), Expect = 1e-05
Identities = 91/534 (17%), Positives = 152/534 (28%), Gaps = 182/534 (34%)
Query: 45 DQTASTSKTVILF-----KNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI---------- 89
D+ + ++ V F E F +++ L L++ + + DI
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 90 -------------------RVNGKPVEGKFRSACGFMYQHDLF----SPSLTVY------ 120
+ +P + K SA LF + +
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSA--------LFRAVGEGNAQLVAIFGGQ 163
Query: 121 ---EHLYFMALLKLDRRVKAYQRI--ALINS---LLIELGLMNSQHTRIGSSSITQKVVL 172
+ YF L L + Y + LI L EL +++ + V
Sbjct: 164 GNTDD-YFEELRDL---YQTYHVLVGDLIKFSAETLSELI----------RTTLDAEKVF 209
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTG-LDSFSAS-KLIRMMRELTSQRKKTVLCTIH 230
+ G L+ E L +P+ + P L S S LI + V +
Sbjct: 210 TQG----LNIL-EWLENPS----NTPDKDYLLSIPISCPLI----GVIQLAHYVVTAKLL 256
Query: 231 QPS-SELIDMFD------------KIILLADSRTAFIGSKDAALAFLESQGYPC----PY 273
+ EL I DS +F S A+ L G C P
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 274 GYNPADFLIKSLAVTTNDE------LS----SRRRLKRICDEFSVCDFAKEVDLEI---N 320
P L SL N+E LS ++ +++ ++ + +EI N
Sbjct: 317 TSLPPSILEDSLE---NNEGVPSPMLSISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVN 372
Query: 321 -YQTHV--GTYDFLADFNS--RKIKKPFWFT---IIY----VLISRSFLNVVRDPAIQL- 367
+ V G L N RK K P I + + S FL P +
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-----P-VASP 426
Query: 368 --SKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDML 425
S L A+ L+ DL + V + I P+Y D+
Sbjct: 427 FHSHLLVP-ASDLINK-------DLVKNNVSFNAKDIQI--------PVYDTFDG-SDL- 468
Query: 426 PLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFL 479
R S S+ I+ + + + W + + + L
Sbjct: 469 ----RVLS---------------GSISERIVDC-IIRLPVKWETTTQFKATHIL 502
Score = 39.6 bits (92), Expect = 0.003
Identities = 43/280 (15%), Positives = 88/280 (31%), Gaps = 82/280 (29%)
Query: 258 DAALAFLESQGYPCPYGY--------NPADFLIKSLAVTTNDELSSRRR---LKRICDEF 306
+ A + YG+ NP +L + E R R I +
Sbjct: 1647 NRADNHFKDT-----YGFSILDIVINNP-----VNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 307 S-VCDFAKEVDLEINYQTHVGTYDFLADFNSRKIKKPFWFT---IIYVLISRSFLNVVRD 362
+++ EIN + +Y F ++ + FT + L+ ++ ++
Sbjct: 1697 VDGKLKTEKIFKEINEHS--TSYTFRSE--KGLLSAT-QFTQPAL--TLMEKAAFEDLKS 1749
Query: 363 P-AIQLSKLFQKVA-------TALMCGLCFAGSIDLT-------QRGVQSVQGALFIMVT 407
I F A AL A + + RG ++Q A +
Sbjct: 1750 KGLIPADATF---AGHSLGEYAALAS---LADVMSIESLVEVVFYRG-MTMQVA---VPR 1799
Query: 408 ENTFSPMYSVLSQFPD-MLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLF----- 461
+ Y +++ P + F +E A Q+ + + G +++ V +
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQE-------ALQYVVERV-GKRTGWLVEIVNYNVENQ 1851
Query: 462 TVILYWISGLRNSLSVFLMAVL-------ICILIINVATS 494
+ +G +L + VL I I+ + + S
Sbjct: 1852 QYV---AAGDLRALDT-VTNVLNFIKLQKIDIIELQKSLS 1887
Score = 37.0 bits (85), Expect = 0.026
Identities = 47/333 (14%), Positives = 95/333 (28%), Gaps = 135/333 (40%)
Query: 100 FRSACGFMYQHDLFS---------PSLTVY------EHLY--FMALL---KLDRRVKAYQ 139
+ A FS +LT++ + + + A++ +D ++K +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
IN +S T + E+ L AT+ T PAL L
Sbjct: 1706 IFKEINEHS---------------TSYTFR-----SEKGLL-SATQF-TQPALTL----- 1738
Query: 200 TGLDSFSASKLI-RMMRELTSQRKKTV-----------LCTIHQPSSELIDMFDKIILLA 247
K ++ L ++ ++++ + + ++
Sbjct: 1739 -------MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL----ADVMSIESLVEVVF 1787
Query: 248 DSRTAFIGSKDAALAFLESQGYPCPYGY-----NPADFLIKSLAVTTNDELSSRRRLKRI 302
R G + + Y NP +A + + E L+ +
Sbjct: 1788 -YR----GM---TMQVAVPRDELGRSNYGMIAINPG-----RVAASFSQE-----ALQYV 1829
Query: 303 CDEFSVCDFAKEVDLEI-NY----QTHV--GTY---DFLAD-FNSRKIKKPFWFTIIYVL 351
+ V + +EI NY Q +V G D + + N K++K
Sbjct: 1830 VER--VGKRTGWL-VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK---------- 1876
Query: 352 ISRSFLNVVRDPAIQLSKL-----FQKVATALM 379
I + +L ++V L
Sbjct: 1877 -------------IDIIELQKSLSLEEVEGHLF 1896
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 61.2 bits (149), Expect = 5e-10
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
LSGGE +R++ A LL D + L DEP+ LD + R +R L + +KT L
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
Score = 58.1 bits (141), Expect = 5e-09
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
LSGGE +R++ A LL + DEP++ LD R +R L S+ K+VL
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL-SEEGKSVL 212
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 55.1 bits (133), Expect = 3e-09
Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 16/117 (13%)
Query: 134 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL------L 187
K + + + L + LSGGER L A L
Sbjct: 27 EGKYSEVVVRAEENKVRLFV---VWEGKERPLTF----LSGGERIALGLAFRLAMSLYLA 79
Query: 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244
+ +LL+ DEPT LD KLI +M + V+ H EL D D +I
Sbjct: 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAADHVI 133
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 58.1 bits (140), Expect = 3e-09
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 172 LSGGERKRLSFATEL------LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
LSGGER L A L + +LL+ DEPT LD KLI +M + + +
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 226 LCTIHQPSSELIDMFDKIILL 246
L + H EL D D +I +
Sbjct: 309 LVS-HDE--ELKDAADHVIRI 326
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 56.2 bits (135), Expect = 2e-08
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 144 INSLLIELGLM--NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
I LGL H+RI LSGG++ +L A P L++ DEPT
Sbjct: 880 IEEHCSMLGLDPEIVSHSRIRG--------LSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSR 250
LD S L + ++E + V+ H S+E + +++ + D R
Sbjct: 932 LDRDSLGALSKALKEF----EGGVIIITH--SAEFTKNLTEEVWAVKDGR 975
Score = 55.8 bits (134), Expect = 3e-08
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 137 AYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 195
I LIE G I + LSGG + +L+ A +L + +LL
Sbjct: 521 GVGTKEAIKDKLIEFGFTDEMIAMPISA--------LSGGWKMKLALARAVLRNADILLL 572
Query: 196 DEPTTGLD 203
DEPT LD
Sbjct: 573 DEPTNHLD 580
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 53.0 bits (128), Expect = 1e-07
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE++R++ A +L P ++L DE T+ LD+ + + + ++ + R T + H+
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR--TTIVVAHR 248
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S+ + D+I+++ D G +A L+
Sbjct: 249 LST--VVNADQILVIKDGCIVERGRHEALLS 277
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 5e-07
Identities = 62/382 (16%), Positives = 112/382 (29%), Gaps = 95/382 (24%)
Query: 121 EHLYFMALLKLD-----RRVKAYQ---RIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172
Y LL L + A+ +I LL TR +T L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKI-----LLT---------TR--FKQVTD--FL 281
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKT---VLCT 228
S +S L ++ L + L K + ++L + T L
Sbjct: 282 SAATTTHIS-----LDHHSMTLTPDEVKSL--LL--KYLDCRPQDLPREVLTTNPRRLSI 332
Query: 229 IHQPSSELIDMFDKII----LLADSRTAFIGSKDAALAFLESQGYPCPYGYN-----PAD 279
I + + D + D T I S L E + ++ P
Sbjct: 333 I---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----FDRLSVFPPS 384
Query: 280 FLI--KSLAV-----TTND------ELSSRRRLKRICDEFSV----CDFAKEVDLEINYQ 322
I L++ +D +L +++ E ++ +V LE Y
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 323 TH---VGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQL-SKLF------- 371
H V Y+ F+S + P+ Y I N+ + L +F
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 372 QKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLP----- 426
QK+ ++ Q+ ++ + +I + + + + + F LP
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQ-LKFYKP--YICDNDPKYERLVNAILDF---LPKIEEN 558
Query: 427 LFHREYSSGLYSAFQFYLSYIL 448
L +Y+ L A I
Sbjct: 559 LICSKYTDLLRIALMAEDEAIF 580
Score = 50.2 bits (119), Expect = 2e-06
Identities = 63/394 (15%), Positives = 124/394 (31%), Gaps = 129/394 (32%)
Query: 257 KDAALAFLES--QGYPCPYGYNPADFL--------IKSLAVTTNDELSSRRRLKRICD-- 304
KD F ++ + C + D I + ++ + + R +
Sbjct: 19 KDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 305 EFSVCDFAKEVDLEINYQTHVGTYDFLADFNSRKIKKPFWFTIIYV-LISRSF------- 356
E V F +EV L INY FL + ++P T +Y+ R +
Sbjct: 76 EEMVQKFVEEV-LRINY-------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 357 -LNVVR-DPAIQLSKLFQKVATA---LMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTF 411
NV R P ++L + ++ A L+ G+ GS G ++ + + V +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGV--LGS------G-KTW---VALDVCLS-- 173
Query: 412 SPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLII---QAVLFTVILYWI 468
Y V + + F+L+ + P ++ Q +L+ + W
Sbjct: 174 ---YKVQCKMDFKI----------------FWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 469 SG-------------LRNSLSVFLMAVL--ICILII-NVATSCGIMFSLAFSSVSTAMAC 512
S ++ L L + C+L++ NV +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA----------------KA 258
Query: 513 LVPFDY---TLMIT--AGVFYKLSSLPPYFVWIRYLSWLEYSNEALTI-TQWQGVTNITC 566
F+ L+ T V LS+ + + + S +E ++ ++
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC----- 313
Query: 567 FDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMV 600
DLP E N P ++++
Sbjct: 314 -RPQDLP-RE--VLTTN----------PRRLSII 333
Score = 45.2 bits (106), Expect = 6e-05
Identities = 68/428 (15%), Positives = 129/428 (30%), Gaps = 129/428 (30%)
Query: 43 IMDQTASTSKTVILFKNNEEVPNV-----DFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97
+ D K+++ + EE+ ++ S +RLF ++ + K VE
Sbjct: 38 VQDMP----KSIL---SKEEIDHIIMSKDAVSGTLRLF------WTLLSKQEEMVQKFVE 84
Query: 98 GKFRSACGFM---YQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQ--RIALINSLLIEL 151
R F+ + + PS+ ++ L D + Y R+ L
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQ 142
Query: 152 GLMNSQHTR---------IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
L+ + + G + + V LS + ++ F L L C+ P T
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN---LKNCNSPET-- 197
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
++ M+++L Q I + D I L S +
Sbjct: 198 -------VLEMLQKLLYQ--------IDPNWTSRSDHSSNIKLRIHS------IQAELRR 236
Query: 263 FLESQGYP-C---------PYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFA 312
L+S+ Y C +N + K L +TT K++ D S
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRF--------KQVTDFLSA-ATT 286
Query: 313 KEVDLEINYQ--THVGTYDFLADFNSRKIKK---------PFWFTIIYVLI----SRS-- 355
+ L+ + T L + + + P +II I +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 356 FLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMY 415
+ +V D +L+ + + S++ L + M+
Sbjct: 347 WKHVNCD---KLTTIIES-------------SLN-----------VL----EPAEYRKMF 375
Query: 416 SVLSQFPD 423
LS FP
Sbjct: 376 DRLSVFPP 383
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 50.8 bits (122), Expect = 7e-07
Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAY 138
G + V+G+ + K R G ++QH +L S S TV+ ++ L+LD K
Sbjct: 83 GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS-SRTVFGNVAL--PLELDNTPKD- 138
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ + LL +GL + + + LSGG+++R++ A L ++P +LLCD+
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPSN--------LSGGQKQRVAIARALASNPKVLLCDQA 190
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
T+ LD + ++ +++++ + T+L H+
Sbjct: 191 TSALDPATTRSILELLKDINRRLGLTILLITHE 223
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 49.1 bits (118), Expect = 1e-06
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGER+R++ A LL DP +++ DE T+ LDS + + + +L R T++ H+
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNR--TLIIIAHR 213
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S+ I + IILL + G+ L
Sbjct: 214 LST--ISSAESIILLNKGKIVEKGTHKDLLK 242
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 47.2 bits (113), Expect = 5e-06
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 28/179 (15%)
Query: 86 DGDIRVNGKPVEGK--FRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G++R+NG + R GF+ Q LF P L+VY ++ + L R V+ +R
Sbjct: 52 RGEVRLNGADITPLPPERRGIGFVPQDYALF-PHLSVYRNIAY-GL----RNVERVERDR 105
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
+ + +LG+ + + LSGGER+R++ A L+ P LLL DEP + +
Sbjct: 106 RVREMAEKLGIAHLLDRKPAR--------LSGGERQRVALARALVIQPRLLLLDEPLSAV 157
Query: 203 DSFSASKL-IRMMRELTSQRKKTVLCTIH----QPSSELIDMFDKIILLADSRTAFIGS 256
D K +M EL +++ + +H E + D++ ++ + R G
Sbjct: 158 D----LKTKGVLMEELRFVQREFDVPILHVTHDL--IEAAMLADEVAVMLNGRIVEKGK 210
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 47.2 bits (113), Expect = 6e-06
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 20/126 (15%)
Query: 86 DGDIRVNGKPVEG------KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAY 138
+G+I ++G ++ K R G ++Q +LF P +TV ++ +A +K+ + +
Sbjct: 78 EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF-PHMTVLNNI-TLAPMKVRKWPREK 135
Query: 139 -QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ A+ LL ++GL + H S LSGG+ +R++ A L +P ++L DE
Sbjct: 136 AEAKAM--ELLDKVGLKDKAHAYPDS--------LSGGQAQRVAIARALAMEPKIMLFDE 185
Query: 198 PTTGLD 203
PT+ LD
Sbjct: 186 PTSALD 191
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 46.7 bits (112), Expect = 8e-06
Identities = 29/163 (17%), Positives = 49/163 (30%), Gaps = 40/163 (24%)
Query: 87 GDIRVNGKPVEGK---FRSACG----FMYQH-DLFSPSLTVYE-----------HLYFMA 127
G + K + K G F Q +TV E
Sbjct: 62 GRVYFENKDITNKEPAELYHYGIVRTF--QTPQPLK-EMTVLENLLIGEICPGESPLNSL 118
Query: 128 LLKLDRRV-KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186
K + A +L L L + + G LSGG+ K + L
Sbjct: 119 FYKKWIPKEEEMVEKAF--KILEFLKLSHLYDRKAGE--------LSGGQMKLVEIGRAL 168
Query: 187 LTDPALLLCDEPTTGL---DSFSASKLIRMMRELTSQRKKTVL 226
+T+P +++ DEP G+ + + ++ + T L
Sbjct: 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA----KGITFL 207
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 45.5 bits (109), Expect = 2e-05
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
V +SGG+R+RL+ A L +P +L+ DE T LDS S
Sbjct: 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 45.2 bits (108), Expect = 3e-05
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ R TV+ H+
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR--TVIIIAHR 203
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S+ + D+II++ + G L+
Sbjct: 204 LST--VKNADRIIVMEKGKIVEQGKHKELLS 232
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 45.3 bits (108), Expect = 3e-05
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 87 GDIRVNGKPVEGK--FRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
GD+ + GK V + G ++Q+ LF +TVY+++ F L+ R K +
Sbjct: 70 GDVWIGGKRVTDLPPQKRNVGLVFQNYALF-QHMTVYDNVSFG--LREKRVPKDEMDARV 126
Query: 144 INSL-LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
L + L + + LSGG+++R++ A L P +LL DEP +
Sbjct: 127 RELLRFMRLESY-------ANRFPHE---LSGGQQQRVALARALAPRPQVLLFDEPFAAI 176
Query: 203 DSFSASKLIRMMR-EL 217
D +++ R +R +
Sbjct: 177 D----TQIRRELRTFV 188
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 44.6 bits (106), Expect = 9e-05
Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 20/226 (8%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
T +G LSGG+++R++ A L+ +P +LL DE T+ LD+ S + + + +
Sbjct: 517 DTLVGERGAQ----LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD---------AALAFLESQG 268
R T + H+ S+ + D I G+ D L ++ G
Sbjct: 573 REGR--TTIVIAHRLST--VRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAG 628
Query: 269 YPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTY 328
G + + + + S ++R S+C + +
Sbjct: 629 NEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDV 688
Query: 329 DFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDP--AIQLSKLFQ 372
+ + K+ W + + + +N P ++ SK+
Sbjct: 689 PPASFWRILKLNSTEWPYFVVGIFC-AIINGGLQPAFSVIFSKVVG 733
Score = 40.8 bits (96), Expect = 0.002
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
+TR+G TQ LSGG+++R++ A L+ P +LL DE T+ LD+ S
Sbjct: 1162 NTRVGDKG-TQ---LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 43.7 bits (104), Expect = 1e-04
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 25/145 (17%)
Query: 87 GDIRVNGKPVEGKFRSA------CGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
G+I ++GK + K + G++ Q LF P LTVY ++ + L + A Q
Sbjct: 59 GEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF-PHLTVYRNIAYG--LGNGKGRTA-Q 114
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
I ++L G+ + + + LSGG+++R + A L DP L+L DEP
Sbjct: 115 ERQRIEAMLELTGI-----SELAGRYPHE---LSGGQQQRAALARALAPDPELILLDEPF 166
Query: 200 TGLDSFSASKL-IRMMRELTS-QRK 222
+ LD +L ++ ++ + R
Sbjct: 167 SALD----EQLRRQIREDMIAALRA 187
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 43.3 bits (103), Expect = 2e-04
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 30/144 (20%)
Query: 87 GDIRVNGKPVEGK--FRSACGFMYQH-DLFSPSLTVYEHLYF---MALLKLDRRVKAYQR 140
G I ++GK V + F+YQ+ LF P + V ++L F M +K +RV R
Sbjct: 55 GRILLDGKDVTDLSPEKHDIAFVYQNYSLF-PHMNVKKNLEFGMRMKKIKDPKRVLDTAR 113
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+++ + + LSGGE++R++ A L+T+P +LL DEP +
Sbjct: 114 -------DLKIEHL-------LDRNPLT---LSGGEQQRVALARALVTNPKILLLDEPLS 156
Query: 201 GLDSFSASKL-IRMMRELTS-QRK 222
LD + L+ +K
Sbjct: 157 ALD----PRTQENAREMLSVLHKK 176
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 42.6 bits (101), Expect = 3e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204
V LSGG+++RLS A L +P +L+ DE T+ LD
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 42.6 bits (101), Expect = 3e-04
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-----RMMRELTS 219
V+LSGG+R+R++ A LL D +L+ DE T+ LD+ S + I + + TS
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTS 532
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 42.1 bits (99), Expect = 4e-04
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 172 LSGGERKRLSFATEL-------LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224
LSGGE+ ++ + L ++ DEPT LD +KL + R++ S +
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 225 VLCTI-HQPSSELIDMFDKII 244
+ I H EL D+ D II
Sbjct: 341 I---ITHHR--ELEDVADVII 356
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 41.8 bits (99), Expect = 6e-04
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-----R 212
T IG + + LSGG+R+R++ A LL D +L+ DE T+ LD+ S + I
Sbjct: 471 DTVIGENGTS----LSGGQRQRVAIARALLRDAPVLILDEATSALDTES-ERAIQAALDE 525
Query: 213 MMRELTS 219
+ + T
Sbjct: 526 LQKNKTV 532
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 41.0 bits (97), Expect = 6e-04
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 86 DGDIRVNGKPVEG-----------------KFRSACGFMYQH-DLFSPSLTVYEHLYFMA 127
+G I VNG+ + R+ ++QH +L+ +TV E++ A
Sbjct: 60 EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW-SHMTVLENV-MEA 117
Query: 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187
+++ K L ++G+ + LSGG+++R+S A L
Sbjct: 118 PIQVLGLSKH-DARERALKYLAKVGIDERAQGKYPVH-------LSGGQQQRVSIARALA 169
Query: 188 TDPALLLCDEPTTGLD 203
+P +LL DEPT+ LD
Sbjct: 170 MEPDVLLFDEPTSALD 185
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 41.0 bits (97), Expect = 7e-04
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
LSGG+R+ ++ A L+ P LL+ D T+ LD+ +
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 40.1 bits (95), Expect = 0.002
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 160 RIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
++G + T LSGGE +R+ A+EL T L + DEPT GL KL+ ++
Sbjct: 798 KLGQPATT----LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 217 LTSQ 220
L +
Sbjct: 854 LVDR 857
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 40.2 bits (95), Expect = 0.002
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 160 RIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
R+G + LSGGE +R+ ATEL + + DEPTTGL +L R + +
Sbjct: 723 RLGQPATE----LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVK 778
Query: 217 L 217
L
Sbjct: 779 L 779
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 39.8 bits (94), Expect = 0.003
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 160 RIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
++G + T LSGGE +R+ A EL L + DEPTTGL ++L+ ++
Sbjct: 536 KLGQPATT----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 591
Query: 217 LTSQ 220
L
Sbjct: 592 LVDN 595
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 39.1 bits (92), Expect = 0.004
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA------SKLIRMMRELTSQRKKTV 225
SGG+++RLS A L+ P +L+ D D S+ +++ ++ T + T
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILD------DCTSSVDPITEKRILDGLKRYT--KGCTT 531
Query: 226 LCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
I Q + DKI++L + + A G+
Sbjct: 532 F-IITQKIPTALLA-DKILVLHEGKVAGFGT 560
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 39.4 bits (93), Expect = 0.004
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 160 RIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
++G + T LSGGE +R+ A EL L + DEPTTGL ++L+ ++
Sbjct: 838 KLGQPATT----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 217 LTSQ 220
L
Sbjct: 894 LVDN 897
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 39.0 bits (92), Expect = 0.005
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 160 RIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
R+G + T LSGGE +R+ A+EL T + + DEPTTGL KL+ ++
Sbjct: 856 RLGQPAPT----LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVING 911
Query: 217 LTSQ 220
L +
Sbjct: 912 LVDK 915
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 38.7 bits (91), Expect = 0.006
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
V+LSGG+++R++ A LL +P +LL DE T+ LD+ +
Sbjct: 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 518
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 37.4 bits (88), Expect = 0.007
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 115 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSL---LIELGLMNSQHTRIGSSSITQKVV 171
P LTVYE+L A + D+ + + I SL L E R+ T
Sbjct: 94 PELTVYENLMMGAYNRKDKEGIK-RDLEWIFSLFPRLKE---------RLKQLGGT---- 139
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGL 202
LSGGE++ L+ L++ P LL+ DEP+ GL
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGL 170
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 37.4 bits (87), Expect = 0.011
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LS G ++ + A +L+ +LL DEP+ LD + + R +++ + TV+ +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC--TVILCEAR 213
Query: 232 PSSELIDMFDKIILL 246
+ + D+ +++
Sbjct: 214 IEA--MLECDQFLVI 226
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 36.0 bits (84), Expect = 0.022
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMR 215
+ +G IT LSGG+R R+S A + D L L D P LD + ++ + +
Sbjct: 121 NIVLGEGGIT----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 216 ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
+ KT + + E + DKI++L + + F G+
Sbjct: 177 LM---ANKTRILVTSK--MEHLKKADKILILHEGSSYFYGT 212
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 36.2 bits (84), Expect = 0.025
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRE 216
+G IT LSGG+R R+S A + D L L D P LD + ++ + +
Sbjct: 151 IVLGEGGIT----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 206
Query: 217 LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
+ KT + + E + DKI++L + + F G+
Sbjct: 207 M---ANKTRILVTSK--MEHLKKADKILILHEGSSYFYGT 241
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 32.9 bits (76), Expect = 0.22
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL----IRM 213
T IG + LSGG+++R+S A + ++ + L D+P + +D+ + I
Sbjct: 118 RTEIGEKGVN----LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGP 173
Query: 214 MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
L + KT + H + D II+++ + + +GS
Sbjct: 174 KGML---KNKTRILVTHS--MSYLPQVDVIIVMSGGKISEMGS 211
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 33.0 bits (76), Expect = 0.25
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 215
LSG +++R++ A L+ DP+LLL DEP + LD +++ R
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLD----ARMRDSAR 180
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 32.5 bits (74), Expect = 0.40
Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 5/102 (4%)
Query: 439 AFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVAT---SC 495
F L G I L +I + + ++I+
Sbjct: 88 GFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFG 147
Query: 496 GIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYF 537
G ++ + V L+P ++I Y S P
Sbjct: 148 GTKYTARIAKVGFFAGILLPA--FILIALAAIYLHSGAPVAI 187
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 32.1 bits (73), Expect = 0.58
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 172 LSGGERKRLSFATEL-LTDPA-----LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
LSGGER +S + + L + A DE + LD+ + K+ +++EL K V
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 226 LCTIHQPSSELIDMFDKII 244
T H E + FD+ +
Sbjct: 340 FIT-HDR--EFSEAFDRKL 355
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 31.8 bits (73), Expect = 0.68
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LS G+R+ L+ L +P +L+ DE T+ +D
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.75
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 436 LYSAFQFYLSYILSSLPGLIIQAVL 460
L ++ + Y S P L I+A +
Sbjct: 25 LQASLKLYAD---DSAPALAIKATM 46
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 30.6 bits (69), Expect = 1.1
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 10 TVILFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVD 67
T++LFKN E + VG++ + L ++ TV++ +N + ++D
Sbjct: 87 TLLLFKNGEVA-----ATKVGALSKGQLKEFLDANLAGSAMESTVMVLRNMVDPKDID 139
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 30.3 bits (69), Expect = 2.1
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 31/109 (28%)
Query: 115 PSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166
P +TVY+++ F L+L D++V+ ++ I+ LL R
Sbjct: 88 PHMTVYKNIAFP--LELRKAPREEIDKKVREVAKMLHIDKLL----------NRYPWQ-- 133
Query: 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 215
LSGG+++R++ A L+ +P +LL DEP + LD + L +R
Sbjct: 134 -----LSGGQQQRVAIARALVKEPEVLLLDEPLSNLD----ALLRLEVR 173
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 29.9 bits (68), Expect = 2.6
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 1 MDQTASTSKTVILFKNNE-EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKN 59
D + T K ++ KNN+ +F E + + + + IV +TA V +N
Sbjct: 159 TDTSTITYKGILEIKNNKFRKIKGEFEEFLKNCK-FLIVYAEKRKKKTAELVNEVAKIEN 217
Query: 60 NEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89
+E+ F E+ + VID+ + +
Sbjct: 218 KDEI----FKEIDK-----VIDEALKIKNK 238
>2zyz_B TRNA-splicing endonuclease; crenarchaea, heterotetramer, RNA PROC
endonuclease, hydrolase, tRNA processing; 1.70A
{Pyrobaculum aerophilum}
Length = 183
Score = 28.9 bits (64), Expect = 3.7
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 235
SA+ + R R S RK L T+ + + E
Sbjct: 140 KGISATDITRGGRLSHSVRKTWTLATVLRQTGE 172
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 29.1 bits (66), Expect = 4.1
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 215
LSGG+R+R++ A ++ +P +LL DEP + LD +KL MR
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD----AKLRVAMR 181
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 29.1 bits (66), Expect = 4.6
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 31/109 (28%)
Query: 115 PSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166
P +TV+E++ F L+ ++RV R LI++LL R +
Sbjct: 88 PHMTVFENIAFP--LRARRISKDEVEKRVVEIARKLLIDNLL----------DRKPTQ-- 133
Query: 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 215
LSGG+++R++ A L+ P +LL DEP + LD + L +MR
Sbjct: 134 -----LSGGQQQRVALARALVKQPKVLLFDEPLSNLD----ANLRMIMR 173
>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural
genomics, NPPSFA; 2.80A {Sulfolobus tokodaii}
Length = 180
Score = 28.4 bits (63), Expect = 5.4
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 235
S+++++ R S RK+ +L ++ + +
Sbjct: 137 SQISSNEILGFGRVSHSTRKELILGIVNLTNGK 169
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA
complex, S4 domain, alpha/beta protein, isomerase,
RNA-binding, rRNA processing; HET: FHU; 3.00A
{Escherichia coli}
Length = 290
Score = 28.8 bits (65), Expect = 5.8
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
Query: 69 SELIRL--FLSQV-------IDDCIIDGDIRVNGKPVE 97
+RL ++S+ D I G++ +NGK
Sbjct: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT 41
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 28.4 bits (64), Expect = 8.1
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 215
LSGG+R+R++ ++ P + L DEP + LD +KL MR
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD----AKLRVRMR 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.407
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,214,736
Number of extensions: 556805
Number of successful extensions: 1583
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1549
Number of HSP's successfully gapped: 84
Length of query: 622
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 523
Effective length of database: 3,937,614
Effective search space: 2059372122
Effective search space used: 2059372122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.1 bits)