RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2519
(622 letters)
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 97.2 bits (242), Expect = 2e-23
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 86 DGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKA 137
+G++ ++ R GF++Q P LT E++ + K +
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+R L L + LSGG+++R++ A L +P ++L D+
Sbjct: 119 EERRKRALECLKMAELEERFANHKPNQ-------LSGGQQQRVAIARALANNPPIILADQ 171
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
PT LDS + K+++++++L + KTV+ H + ++II L D
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGE 222
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 92.9 bits (231), Expect = 8e-22
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 18/198 (9%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLY 124
S LI L + G I ++G ++ R+ G + Q D S TV E++
Sbjct: 58 STLINLIPRF---YDVTSGQILIDGHNIKDFLTGSLRNQIG-LVQQDNILFSDTVKENIL 113
Query: 125 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFAT 184
D V ++A + ++ L T +G + LSGG+++RLS A
Sbjct: 114 LGRPTATDEEVVEAAKMANAHDFIMNLP--QGYDTEVGERGVK----LSGGQKQRLSIAR 167
Query: 185 ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244
L +P +L+ DE T+ LD S S + + L + +T L H+ S+ I DKI+
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQEALDVL--SKDRTTLIVAHRLST--ITHADKIV 223
Query: 245 LLADSRTAFIGSKDAALA 262
++ + G+ +A
Sbjct: 224 VIENGHIVETGTHRELIA 241
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 91.4 bits (227), Expect = 2e-21
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 14/175 (8%)
Query: 86 DGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
+G I + V ++Q P +TVYE++ F + ++ +
Sbjct: 60 EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI---KKFPKDEIDKR 116
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ L + + LSGG+R+R++ A ++ +P +LL DEP + LD
Sbjct: 117 VRWAAELLQIEELLNRYPAQ--------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ + +++L + K T + H E + M D+I ++ + IGS
Sbjct: 169 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPT 222
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 91.1 bits (226), Expect = 3e-21
Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 15/197 (7%)
Query: 69 SELIRL---FLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 125
S + L F ++DG R+ + Q+ Y
Sbjct: 55 STIASLITRFYDIDEGHILMDGHDLREYTLAS--LRNQVALVSQNVHLFNDTVANNIAYA 112
Query: 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185
+++ R+A + ++ N T IG + + LSGG+R+R++ A
Sbjct: 113 RTEEYSREQIEEAARMAYAMDFINKMD--NGLDTIIGENGVL----LSGGQRQRIAIARA 166
Query: 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245
LL D +L+ DE T+ LD+ S + + EL Q+ +T L H+ S I+ D+I++
Sbjct: 167 LLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVIAHRLS--TIEQADEIVV 222
Query: 246 LADSRTAFIGSKDAALA 262
+ D G+ LA
Sbjct: 223 VEDGIIVERGTHSELLA 239
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 86.2 bits (213), Expect = 1e-19
Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 25/188 (13%)
Query: 86 DGDIRVNGKPVEGKF-----RSACGFMYQHDLFSPSLTVYEHLYF----------MALLK 130
+G + K + K +Q +TV E+L +L
Sbjct: 58 EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFY 117
Query: 131 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190
K + + +L L L + + G LSGG+ K + L+T+P
Sbjct: 118 KKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE--------LSGGQMKLVEIGRALMTNP 169
Query: 191 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
+++ DEP G+ A + + EL + T L H+ +++ D + ++ + +
Sbjct: 170 KMIVMDEPIAGVAPGLAHDIFNHVLELK-AKGITFLIIEHRL-DIVLNYIDHLYVMFNGQ 227
Query: 251 TAFIGSKD 258
G +
Sbjct: 228 IIAEGRGE 235
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 84.6 bits (209), Expect = 5e-19
Identities = 36/179 (20%), Positives = 79/179 (44%), Gaps = 19/179 (10%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
G + V+G+ + K R G ++QH S TV+ ++ L +
Sbjct: 60 GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDE 116
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
+ LL +GL + + + LSGG+++R++ A L ++P +LLCDE T
Sbjct: 117 VKRRVTELLSLVGLGDKHDSYPSN--------LSGGQKQRVAIARALASNPKVLLCDEAT 168
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ LD + ++ +++++ + T+L H+ + + D + ++++ +
Sbjct: 169 SALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVS 226
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 83.4 bits (206), Expect = 2e-18
Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 28/192 (14%)
Query: 84 IIDGDIRVNGKPVEG-----------------KFRSACGFMYQHDLFSPSLTVYEHLYFM 126
+G I VNG+ + R+ ++QH +TV E++
Sbjct: 54 PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 113
Query: 127 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186
+ + + L ++G+ + LSGG+++R+S A L
Sbjct: 114 PIQV--LGLSKHDARERALKYLAKVGIDERAQGKYPVH-------LSGGQQQRVSIARAL 164
Query: 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
+P +LL DEPT+ LD +++R+M++ ++ KT++ H+ + +I L
Sbjct: 165 AMEPDVLLFDEPTSALDPELVGEVLRIMQQ-LAEEGKTMVVVTHEM-GFARHVSSHVIFL 222
Query: 247 ADSRTAFIGSKD 258
+ G +
Sbjct: 223 HQGKIEEEGDPE 234
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 82.7 bits (204), Expect = 2e-18
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 126
+ + L + II + KP R + + P LTVYE+L
Sbjct: 46 TTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG 105
Query: 127 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186
A + D+ + + I SL L G+ LSGGE++ L+ L
Sbjct: 106 AYNRKDKE-GIKRDLEWIFSLF--PRLKERLKQLGGT--------LSGGEQQMLAIGRAL 154
Query: 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
++ P LL+ DEP+ GL S++ +++++ +Q T+L + + +L
Sbjct: 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLVEQNA-LGALKVAHYGYVL 212
Query: 247 ADSRTAFIGSKD 258
+ G
Sbjct: 213 ETGQIVLEGKAS 224
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 82.3 bits (203), Expect = 6e-18
Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 20/177 (11%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
+G I+ +G+ F Q P T+ E++ F R + L
Sbjct: 90 EGIIKHSGR---------VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQ 139
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
+ +T +G +T LSGG+R R+S A + D L L D P LD F
Sbjct: 140 DIT---KFAEQDNTVLGEGGVT----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
+ ++ KT + + E + DKI++L + F G+ +
Sbjct: 193 TEEQVFESCVCKL-MANKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQS 246
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 80.8 bits (199), Expect = 1e-17
Identities = 34/193 (17%), Positives = 81/193 (41%), Gaps = 19/193 (9%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEHLYF 125
+ +R+ + + G + V GK V + R ++ + ++ E+L F
Sbjct: 42 TTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRF 98
Query: 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185
+A + + ++ GL R+ + S G ++L A
Sbjct: 99 VAGF---YASSSSEIEEMVERATEIAGLGEKIKDRVST--------YSKGMVRKLLIARA 147
Query: 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245
L+ +P L + DEPT+GLD +A ++ +++++ + + ++ + + E+ + D+I L
Sbjct: 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM--LEVEFLCDRIAL 205
Query: 246 LADSRTAFIGSKD 258
+ + G+ +
Sbjct: 206 IHNGTIVETGTVE 218
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 79.9 bits (197), Expect = 2e-17
Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 15/198 (7%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLY 124
S + L + + ++GKP+ + Q Y
Sbjct: 54 STVAALLQNLYQPTGG---QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAY 110
Query: 125 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFAT 184
+ + A + +S + GL T + + LSGG+R+ ++ A
Sbjct: 111 GLTQKPTMEEITAAAVKSGAHSFI--SGLPQGYDTEVDEAGSQ----LSGGQRQAVALAR 164
Query: 185 ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244
L+ P +L+ D+ T+ LD+ S ++ +++ E + ++VL S L++ D I+
Sbjct: 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHIL 222
Query: 245 LLADSRTAFIGSKDAALA 262
L G+ +
Sbjct: 223 FLEGGAIREGGTHQQLME 240
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 80.0 bits (197), Expect = 2e-17
Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 15/179 (8%)
Query: 88 DIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
+ ++G + R G + Q D + ++ +++ +V ++A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 117
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ + EL + + LSGG+R+R++ A L+ +P +L+ DE T+ LD
Sbjct: 118 AHDFISELREGYNTIVGEQGAG------LSGGQRQRIAIARALVNNPKILIFDEATSALD 171
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S ++R M ++ + +TV+ H+ S + D+II++ + G L+
Sbjct: 172 YESEHVIMRNMHKI--CKGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 77.2 bits (190), Expect = 1e-16
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 86 DGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
G+I ++G+P++ +RS GF+ Q Y + D + +
Sbjct: 56 AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDL 115
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
A S + + + +T +G + +SGG+R+RL+ A L +P +L+ DE T
Sbjct: 116 AFARSFVENM--PDQLNTEVGERGVK----ISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261
LDS S S + + + L + +T L H+ S+ I DKI + + G + +
Sbjct: 170 LDSESESMVQKALDSL--MKGRTTLVIAHRLST--IVDADKIYFIEKGQITGSGKHNELV 225
Query: 262 A-------FLESQ 267
A ++ Q
Sbjct: 226 ATHPLYAKYVSEQ 238
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 75.7 bits (186), Expect = 2e-16
Identities = 30/178 (16%), Positives = 74/178 (41%), Gaps = 23/178 (12%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128
+ L++ + + +I NG P+ K + F+ + + ++V ++L +A
Sbjct: 41 TTLLKTISTYLKPLKG---EIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVEDYLKAVAS 96
Query: 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
L + K I L + +++ + ++G LS G +R+ A+ LL
Sbjct: 97 LYGVKVNKNE-----IMDALESVEVLDLKK-KLG--------ELSQGTIRRVQLASTLLV 142
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
+ + + D+P +D S K+++ + E+ ++ ++ + + + D L
Sbjct: 143 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-----LSYCDVNENL 195
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 75.7 bits (186), Expect = 4e-16
Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 29/188 (15%)
Query: 86 DGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
G I+ G+P+E K ++ Q + V+ +L K R
Sbjct: 52 KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRT 103
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-------TDPALLL 194
L+N + L L + LSGGE +R+ A +L LLL
Sbjct: 104 ELLNDVAGALALDDKLGRSTNQ--------LSGGEWQRVRLAAVVLQITPQANPAGQLLL 155
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254
DEP LD S L +++ L Q+ ++ + H + + + LL +
Sbjct: 156 LDEPMNSLDVAQQSALDKILSALC-QQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLAS 213
Query: 255 GSKDAALA 262
G ++ L
Sbjct: 214 GRREEVLT 221
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 74.2 bits (182), Expect = 2e-15
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 82 DCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
+ I GD+ + K + G ++Q P L+V E++ F L ++ Q
Sbjct: 50 ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ 109
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
R+ N + L L + + + LSGG+R+R++ L+ +P++ L DEP
Sbjct: 110 RV---NQVAEVLQLAHLLDRKPKA--------LSGGQRQRVAIGRTLVAEPSVFLLDEPL 158
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ LD+ ++ + L + +T++ H E + + DKI++L R A +G
Sbjct: 159 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPL 216
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 67.3 bits (164), Expect = 4e-13
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 88 DIRVNGKPVEGKFRSA--------CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
I + K V + ++Q P +TVY+++ F L R+V +
Sbjct: 59 QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL---RKVPRQE 115
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
+ + LGL + + LSGG+R+R++ ++ P + L DEP
Sbjct: 116 IDQRVREVAELLGLTELLNRKPRE--------LSGGQRQRVALGRAIVRKPQVFLMDEPL 167
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ LD+ ++ +++L Q T + H E + M D+I ++ +GS D
Sbjct: 168 SNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 58.6 bits (141), Expect = 3e-10
Identities = 36/180 (20%), Positives = 80/180 (44%), Gaps = 19/180 (10%)
Query: 86 DGDIRVNGKPVEGKFRSAC-------GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAY 138
G++ + + V + G ++Q P+LT +E++ F + +
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+R+ + L + + + LSG +++R++ A L+ DP+LLL DEP
Sbjct: 119 KRV---EEVAKILDIHHVLNHFPRE--------LSGAQQQRVALARALVKDPSLLLLDEP 167
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ LD+ +++E+ S+ T+L H P +++ + D++ +L + +G +
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 58.5 bits (141), Expect = 3e-10
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 88 DIRVNGKPVEGKF--RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
I ++GK V + F+YQ+ P + V ++L F + +++K +R+
Sbjct: 56 RILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM---KKIKDPKRVL--- 109
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
+L + + + LSGGE++R++ A L+T+P +LL DEP + LD
Sbjct: 110 DTARDLKIEHLLDRNPLT--------LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ M+ L + K TVL H +E M D+I ++ D + +G +
Sbjct: 162 TQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPE 213
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 55.2 bits (131), Expect = 9e-09
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 155 NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 214
+ + S +++ L RL+ + L + +LL+ DEPT LD KLI +M
Sbjct: 270 EGKERPLTFLSGGERIALG--LAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIM 327
Query: 215 RELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
++ V+ H EL D D +I +
Sbjct: 328 ERY-LKKIPQVILVSHDE--ELKDAADHVIRI 356
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 53.9 bits (129), Expect = 1e-08
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 16/175 (9%)
Query: 86 DGDIRVNGKPVE--GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G++R+NG + R GF+ Q P L+VY ++ + R V+ +R
Sbjct: 52 RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG-----LRNVERVERDRR 106
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ + +LG+ + + LSGGER+R++ A L+ P LLL DEP + +D
Sbjct: 107 VREMAEKLGIAHLLDRKPAR--------LSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ L+ +R + + +L H E + D++ ++ + R G
Sbjct: 159 LKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLK 212
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 52.1 bits (123), Expect = 7e-08
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240
+ + L + +LL+ DEPT LD KLI +M ++ V+ H EL D
Sbjct: 217 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQVILVSHDE--ELKDAA 273
Query: 241 DKIILL 246
D +I +
Sbjct: 274 DHVIRI 279
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 39.7 bits (91), Expect = 8e-04
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 180 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239
L FA + DE LD + ++ +R + + + + + +
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQ-FIVISLKN--TMFEK 401
Query: 240 FDKII 244
D ++
Sbjct: 402 SDALV 406
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
10891]}
Length = 1264
Score = 30.3 bits (68), Expect = 0.86
Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 18/187 (9%)
Query: 402 LFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSS---LPGLIIQA 458
L ++V E S VL ++ ++ L H + L+ + P L + A
Sbjct: 155 LALLVAEAGGSLYDPVLQKYDEIPDLSH---NCPLWCFREICRHISGPLPDRAPYLYLSA 211
Query: 459 VLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDY 518
+F + +S S L++ L+ + I+ + A + +
Sbjct: 212 GVF----WLMSPRMTSAIPPLLSDLVNLAILQQTAGLDPSLVKLGVQICLHAAASSSYSW 267
Query: 519 TLMITAGVFYKLSSLPPYFV----WIRYLSWLE-YSNEALTITQWQGVTNITCFDNPDLP 573
++ T +F + + Y + L WLE S+ + GV ++ P
Sbjct: 268 FILKTKSIFPQNTLHSMYESLEGGYCPNLEWLEPRSDYKF---MYMGVMPLSAKYARSAP 324
Query: 574 CLEDGAQ 580
+ A+
Sbjct: 325 SNDKKAR 331
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 422
Score = 29.1 bits (65), Expect = 1.9
Identities = 14/111 (12%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 434 SGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWIS------GLRNSLSVFLMAVLICIL 487
+ L+ + +IIQ ++IL ++ G+ + + +F+ A + +
Sbjct: 122 AVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTI 181
Query: 488 IINVATSCGIMFSL--AFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPY 536
+ G ++ + + + P T+++ V Y
Sbjct: 182 FVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEI 232
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}
Length = 224
Score = 27.9 bits (61), Expect = 2.7
Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 2/90 (2%)
Query: 256 SKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEV 315
+ ALA+L +G P + + + + + D +
Sbjct: 24 EVEPALAYLREKGA--PIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAGHRI 81
Query: 316 DLEINYQTHVGTYDFLADFNSRKIKKPFWF 345
+E ++ + D
Sbjct: 82 VIEEFLDGEEASFIVMVDGEHVLPMATSQD 111
>d1a79a1 c.52.2.1 (A:83-179) Tetrameric tRNA splicing endonuclease,
C-terminal domain {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 97
Score = 25.9 bits (57), Expect = 5.5
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233
SF S+L +R S RKK ++ +
Sbjct: 55 SSFLLSELTGFVRVAHSVRKKLLIAIVDADG 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.407
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,217,299
Number of extensions: 103052
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 29
Length of query: 622
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 531
Effective length of database: 1,158,166
Effective search space: 614986146
Effective search space used: 614986146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.3 bits)