BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2520
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 14/183 (7%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNG---KPVEGKFRSACGFM 65
G V+IMG SG+GKST+L L + + ID +I+ N + R GF+
Sbjct: 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID-NIKTNDLDDDELTKIRRDKIGFV 88
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+Q P LT E++ + K + +R +E M R +
Sbjct: 89 FQQFNLIPLLTALENVELPLIFKYRGAMSGEER----RKRALECLKMAELEERFANHKPN 144
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
Q LSGG+++R++ A L +P ++L D+PT LDS + K+++++++L + KTV+
Sbjct: 145 Q---LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201
Query: 186 TIH 188
H
Sbjct: 202 VTH 204
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 14/183 (7%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNG---KPVEGKFRSACGFM 65
G V+IMG SG+GKST+L L + + ID +I+ N + R GF+
Sbjct: 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID-NIKTNDLDDDELTKIRRDKIGFV 88
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+Q P LT E++ + K + +R +E M R +
Sbjct: 89 FQQFNLIPLLTALENVELPLIFKYRGAMSGEER----RKRALECLKMAELEERFANHKPN 144
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
Q LSGG+++R++ A L +P ++L D+PT LDS + K+++++++L + KTV+
Sbjct: 145 Q---LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV 201
Query: 186 TIH 188
H
Sbjct: 202 VTH 204
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 25/200 (12%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE------- 55
L G +LS G V+I+GASG+GKSTLL L D +G + + GK V+
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL---DAPTEGKVFLEGKEVDYTNEKEL 76
Query: 56 GKFRS-ACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS 114
R+ GF++Q P LT E++ + +LK+ + K + LL ELGL
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENV-IVPMLKMGKPKKEAKERG--EYLLSELGL--- 130
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
G + LSGGE++R++ A L +P LL DEPT LDS + +++ + +
Sbjct: 131 -----GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185
Query: 175 LTSQRKKTVLCTIHQPSSEL 194
+ V+ T + +EL
Sbjct: 186 INEGGTSIVMVTHERELAEL 205
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 22/208 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVE--GKFRSACGFMYQH 68
SG I+G +GAGK+ L ++ +PD G I ++GK V + F+YQ+
Sbjct: 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDS----GRILLDGKDVTDLSPEKHDIAFVYQN 80
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
P + V ++L F +K ++K +R+ L ++ +I +
Sbjct: 81 YSLFPHMNVKKNLEFGMRMK---KIKDPKRV-----------LDTARDLKIEHLLDRNPL 126
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGGE++R++ A L+T+P +LL DEP + LD + M+ L + K TVL H
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186
Query: 189 QPSSELIDMFDKIILLADSRTAFIGSKD 216
+ I M D+I ++ D + +G +
Sbjct: 187 DQTEARI-MADRIAVVMDGKLIQVGKPE 213
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 34/221 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE------GKFRSACGFMY 66
G + AI+G +G GKSTL + L G I + KP++ K R + G ++
Sbjct: 34 GEVTAILGGNGVGKSTLFQNFNGILKPSS---GRILFDNKPIDYSRKGIMKLRESIGIVF 90
Query: 67 Q---HDLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
Q + LFS S VY+ + F A+ +KL + +R+ N+L R G
Sbjct: 91 QDPDNQLFSAS--VYQDVSFGAVNMKLPED-EIRKRVD--NAL-----------KRTGIE 134
Query: 123 SITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
+ K LS G++KR++ A L+ +P +L+ DEPT GLD S++++++ E+ +
Sbjct: 135 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 181 KTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGSKDAALA 220
T++ H +++ ++ D + ++ + R G+ A
Sbjct: 195 ITIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 17/180 (9%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPD----DCIIDGDIRVNGKPVE-GKFRSACGFMY 66
G +V ++G SG+GKST L L+ L D + IIDG I + K K R G ++
Sbjct: 28 EGEVVVVIGPSGSGKSTFLRCLN-LLEDFDEGEIIIDG-INLKAKDTNLNKVREEVGMVF 85
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q P +TV ++ +A +K+ R+ + A LL ++GL + H S
Sbjct: 86 QRFNLFPHMTVLNNIT-LAPMKV-RKWPREKAEAKAMELLDKVGLKDKAHAYPDS----- 138
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+ +R++ A L +P ++L DEPT+ LD +++ +M++L ++ V+ T
Sbjct: 139 ---LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 195
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 29/257 (11%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 68
G + + G +G+GKSTLL A L + D + DG+ + K E + F Y
Sbjct: 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK---KGYEIRRNIGIAFQYPE 88
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQK 127
D F E + + DR + L+ + +GL +S R+
Sbjct: 89 DQFFAERVFDEVAFAVKNFYPDR-----DPVPLVKKAMEFVGLDFDSFKDRV-------P 136
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGGE++R++ A+ ++ +P +L+ DEP GLD + L+R++ + + K +L I
Sbjct: 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL--I 194
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 247
+I+ D++++L + F G++ + FLE P + +++ L +
Sbjct: 195 SHDIETVINHVDRVVVLEKGKKVFDGTR---MEFLEKYD---PRFFTSKMLVMRRLVLKG 248
Query: 248 ND--ELSSRRRLKRICD 262
D +S L+R+C+
Sbjct: 249 EDPFSMSDDELLERVCN 265
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 29/257 (11%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 68
G + + G +G+GKSTLL A L + D + DG+ + K E + F Y
Sbjct: 34 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK---KGYEIRRNIGIAFQYPE 90
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQK 127
D F E + + DR + L+ + +GL +S R+
Sbjct: 91 DQFFAERVFDEVAFAVKNFYPDR-----DPVPLVKKAMEFVGLDFDSFKDRV-------P 138
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGGE++R++ A+ ++ +P +L+ DEP GLD + L+R++ + + K +L I
Sbjct: 139 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL--I 196
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 247
+I+ D++++L + F G++ + FLE P + +++ L +
Sbjct: 197 SHDIETVINHVDRVVVLEKGKKVFDGTR---MEFLEKYD---PRFFTSKMLVMRRLVLKG 250
Query: 248 ND--ELSSRRRLKRICD 262
D +S L+R+C+
Sbjct: 251 EDPFSMSDDELLERVCN 267
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 31/224 (13%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 68
G V +G SG GKSTLL A L D I G+ R+N P G ++Q
Sbjct: 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTP---PAERGVGMVFQS 83
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
P L+V E++ F L ++ QR+ + +L L++ +
Sbjct: 84 YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK----------- 132
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK---KTVLC 185
LSGG+R+R++ L+ +P++ L DEP + LD A+ ++M E++ K +T++
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD---AALRVQMRIEISRLHKRLGRTMIY 189
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPC 229
H E + + DKI++L R A +G LE YP
Sbjct: 190 VTHD-QVEAMTLADKIVVLDAGRVAQVGKP------LELYHYPA 226
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 98/220 (44%), Gaps = 25/220 (11%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G V +G SG GKSTLL A L D I G+ R+N P G ++Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTP---PAERGVGMVFQSY 84
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
P L+V E++ F L ++ QR+ + +L L++ +
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK-----------A 133
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG+R+R++ L+ +P++ L DEP + LD+ ++ + L + +T++ H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 190 PSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPC 229
E + + DKI++L R A +G LE YP
Sbjct: 194 -QVEAMTLADKIVVLDAGRVAQVGKP------LELYHYPA 226
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 17/180 (9%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPD----DCIIDGDIRVNGKPVE-GKFRSACGFMY 66
G +V ++G SG+GKST L L+ L D + IIDG I + K K R G ++
Sbjct: 49 EGEVVVVIGPSGSGKSTFLRCLNL-LEDFDEGEIIIDG-INLKAKDTNLNKVREEVGMVF 106
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q P +TV ++ +A +K+ R+ + A LL ++GL + H S
Sbjct: 107 QRFNLFPHMTVLNNIT-LAPMKV-RKWPREKAEAKAMELLDKVGLKDKAHAYPDS----- 159
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+ +R++ A L +P ++L DEPT+ LD +++ +M++L ++ V+ T
Sbjct: 160 ---LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 216
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G V +G SG GKSTLL A L D I G+ R+N P G ++Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTP---PAERGVGMVFQSY 84
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
P L+V E++ F L ++ QR+ + +L L++ +
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK-----------A 133
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK---KTVLCT 186
LSGG+R+R++ L+ +P++ L D+P + LD A+ ++M E++ K +T++
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD---AALRVQMRIEISRLHKRLGRTMIYV 190
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPC 229
H E + + DKI++L R A +G LE YP
Sbjct: 191 THD-QVEAMTLADKIVVLDAGRVAQVGKP------LELYHYPA 226
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 30/209 (14%)
Query: 12 SGTLVAIMGASGAGKST---LLAALSQRLPDDCIIDGDIRVNG---KPVEGKFRSACGFM 65
G V+I G SG+GKST ++ L + + ID +I+ N + R GF+
Sbjct: 30 EGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYID-NIKTNDLDDDELTKIRRDKIGFV 88
Query: 66 YQHDLFSPSLTVYEHLYFMALLKL-------DRRVKAYQRIALINSLLIELGLMNSQHTR 118
+Q P LT E++ + K +RR +A + L + L E R
Sbjct: 89 FQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALE--CLKXAELEE---------R 137
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+ Q LSGG+++R++ A L +P ++L DEPT LDS + K+ +++++L +
Sbjct: 138 FANHKPNQ---LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEE 194
Query: 179 RKKTVLCTIHQPSSELIDMFDKIILLADS 207
KTV+ H + + ++II L D
Sbjct: 195 DGKTVVVVTHDIN--VARFGERIIYLKDG 221
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 19/201 (9%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
SGT A++G +G+GKST+ A L R D +GDI++ GK V RS G + Q
Sbjct: 45 SGTTCALVGHTGSGKSTI-AKLLYRFYD---AEGDIKIGGKNVNKYNRNSIRSIIGIVPQ 100
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+ Y LY + +KA + L + IE L T +G+ +
Sbjct: 101 DTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD--FIE-ALPKKWDTIVGNKGMK-- 155
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGGER+R++ A LL DP +++ DE T+ LDS + + + +L ++ +T++
Sbjct: 156 --LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL--RKNRTLIIIA 211
Query: 188 HQPSSELIDMFDKIILLADSR 208
H+ S+ I + IILL +
Sbjct: 212 HRLST--ISSAESIILLNKGK 230
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 105/215 (48%), Gaps = 28/215 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRV---NGKPVEGKFRSACGFMYQ 67
+G I+G SGAGK+T + ++ +P + D R+ NGK + G ++Q
Sbjct: 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQ 89
Query: 68 HDLFSPSLTVYEHLYF------MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
P+LT +E++ F M+ ++ +RV+ +I I+ +L + R
Sbjct: 90 TWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-------NHFPR--- 139
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG+++R++ A L+ DP+LLL DEP + LD+ +++E+ S+
Sbjct: 140 -------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
T+L H P +++ + D++ +L + +G +
Sbjct: 193 TLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 115/247 (46%), Gaps = 20/247 (8%)
Query: 13 GTLVAIMGASGAGKST---LLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G VA++G SG GK+T +LA + + + D D+ VN P K+R G ++Q+
Sbjct: 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD-DVLVNDIP--PKYRE-VGMVFQNY 84
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
P +TV+E++ F + + + +R+ I L+ L++ + T+
Sbjct: 85 ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ----------- 133
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG+++R++ A L+ P +LL DEP + LD+ + ++ L + T + H
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193
Query: 190 PSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTND 249
+E + M +I + + G+ D ++ G P +FL + +V+ +
Sbjct: 194 -QAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFL-RDFSVSVEN 251
Query: 250 ELSSRRR 256
+ + +R
Sbjct: 252 KQTILKR 258
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 15/182 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAA---LSQRLPDDCIIDGDIRVNGKPVE-GKFRSACGFMYQ 67
+G + ++GASGAGKSTL+ L + ++DG E K R G ++Q
Sbjct: 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 89
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
H S TV+ ++ L + + +R+ + SL + LG +H S+
Sbjct: 90 HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL-VGLG---DKHDSYPSN----- 140
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+++R++ A L ++P +LLCDE T+ LD + ++ +++++ + T+L
Sbjct: 141 --LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT 198
Query: 188 HQ 189
H+
Sbjct: 199 HE 200
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 20/213 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G VA +G SG GKSTL+ L R D + G I ++G ++ G R+ G + Q
Sbjct: 367 GETVAFVGMSGGGKSTLIN-LIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQD 423
Query: 69 D-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+ LFS TV E++ D V ++A + + + L T +G +
Sbjct: 424 NILFSD--TVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLPQGYDTEVGERGVK-- 477
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+++RLS A L +P +L+ DE T+ LD S S + + L+ R T L
Sbjct: 478 --LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR--TTLIVA 533
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I DKI+++ + G+ +A
Sbjct: 534 HRLST--ITHADKIVVIENGHIVETGTHRELIA 564
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 31/213 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQHD 69
G +A++G SG+GKSTLL ++ G I + K V K R+ G ++Q+
Sbjct: 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTS---GKIYFDEKDVTELPPKDRN-VGLVFQNW 84
Query: 70 LFSPSLTVYEHLYFMALLK------LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
P +TVY+++ F L+ +D++V+ ++ I+ LL N +
Sbjct: 85 ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLL------NRYPWQ----- 133
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGG+++R++ A L+ +P +LL DEP + LD+ ++ ++ L + T
Sbjct: 134 ------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
+ H +E + M D+I ++ + +G+ D
Sbjct: 188 VYVTHD-QAEALAMADRIAVIREGEILQVGTPD 219
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 28/215 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRV---NGKPVEGKFRSACGFMYQ 67
+G I+G SGAGK+T + ++ +P + D R+ NGK + G ++Q
Sbjct: 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQ 89
Query: 68 HDLFSPSLTVYEHLYF------MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
P+LT +E++ F M+ ++ +RV+ +I I+ +L + R
Sbjct: 90 TWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-------NHFPR--- 139
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSG +++R++ A L+ DP+LLL DEP + LD+ +++E+ S+
Sbjct: 140 -------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
T+L H P +++ + D++ +L + +G +
Sbjct: 193 TLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 15/182 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAA---LSQRLPDDCIIDGDIRVNGKPVE-GKFRSACGFMYQ 67
+G + ++GASGAGKSTL+ L + ++DG E K R G ++Q
Sbjct: 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 112
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
H S TV+ ++ L+LD K + + LL +GL +H S+
Sbjct: 113 HFNLLSSRTVFGNVALP--LELDNTPKDEVK-RRVTELLSLVGL-GDKHDSYPSN----- 163
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+++R++ A L ++P +LLCD+ T+ LD + ++ +++++ + T+L
Sbjct: 164 --LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLIT 221
Query: 188 HQ 189
H+
Sbjct: 222 HE 223
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 19/216 (8%)
Query: 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFM 65
A +++A G SG GKST+ + L + G+I ++G+P++ +RS GF+
Sbjct: 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNISLENWRSQIGFV 81
Query: 66 YQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
Q T+ E+L Y + D + +A S + + + +T +G
Sbjct: 82 SQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFV--ENMPDQLNTEVGE--- 135
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ V +SGG+R+RL+ A L +P +L+ DE T LDS S S + + + L + +T L
Sbjct: 136 -RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTL 192
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ ++D DKI + + G + +A
Sbjct: 193 VIAHRLST-IVDA-DKIYFIEKGQITGSGKHNELVA 226
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 118/274 (43%), Gaps = 30/274 (10%)
Query: 5 ELTGAALSGTLVAIMGASGAGKST---LLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA 61
E++ G + ++G SG GK+T ++A L + I GD ++ P +G F
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GD-KLVADPEKGIFVPP 78
Query: 62 ----CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
++Q P +TVY+++ F L+ R + QR+ + LL L+N +
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
LSGG+R+R++ ++ P + L DEP + LD A +RM EL
Sbjct: 139 E-----------LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD---AKLRVRMRAELKK 184
Query: 178 QRKKTVLCTIH--QPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNP 235
+++ + TI+ E + M D+I ++ +GS D + G P
Sbjct: 185 LQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPP 244
Query: 236 ADFLIKSLAVTTNDELS--SRRRLKRICDEFSVC 267
+FL A+ T D RLK + D+F V
Sbjct: 245 MNFLD---AIVTEDGFVDFGEFRLKLLPDQFEVL 275
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 15/182 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAA---LSQRLPDDCIIDGDIRVNGKPVE-GKFRSACGFMYQ 67
+G + ++GASGAGKSTL+ L + ++DG E K R G ++Q
Sbjct: 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQ 112
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
H S TV+ ++ L + + +R+ + SL+ GL +H S+
Sbjct: 113 HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV---GL-GDKHDSYPSN----- 163
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+++R++ A L ++P +LLCD+ T+ LD + ++ +++++ + T+L
Sbjct: 164 --LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLIT 221
Query: 188 HQ 189
H+
Sbjct: 222 HE 223
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 107/201 (53%), Gaps = 21/201 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
+G VA++G SG+GKST+ A+L R D I +G+I ++G + R+ + Q
Sbjct: 368 AGKTVALVGRSGSGKSTI-ASLITRFYD--IDEGEILMDGHDLREYTLASLRNQVALVSQ 424
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+ LF+ TV ++ + + R +++ R+A + ++ N T IG +
Sbjct: 425 NVHLFND--TVANNIAYARTEQYSREQIEEAARMAYAMDFINKMD--NGLDTVIGENG-- 478
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
V+LSGG+R+R++ A LL D +L+ DE T+ LD+ S + + EL Q+ +T L
Sbjct: 479 --VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLV 534
Query: 186 TIHQPSSELIDMFDKIILLAD 206
H+ S+ I+ D+I+++ D
Sbjct: 535 IAHRLST--IEKADEIVVVED 553
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 19/207 (9%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G +V ++G SG+GK+T+L A L + D I G RV P + + G ++Q+
Sbjct: 41 GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK-RVTDLPPQ---KRNVGLVFQNY 96
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
+TVY+++ F ++RV + A + LL + R+ S +
Sbjct: 97 ALFQHMTVYDNVSFGLR---EKRVPKDEMDARVRELL--------RFMRLESYANRFPHE 145
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG+++R++ A L P +LL DEP +D+ +L +R++ + T + H
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205
Query: 190 PSSELIDMFDKIILLADSRTAFIGSKD 216
E +++ D++++L + G+ +
Sbjct: 206 -QEEALEVADRVLVLHEGNVEQFGTPE 231
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 53/231 (22%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH-DL 70
SG +VAI+G +GAGKSTLL L+ L P G+ C + Q+ +
Sbjct: 36 SGEMVAIIGPNGAGKSTLLRLLTGYL--------------SPSHGE----CHLLGQNLNS 77
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL--LIELGLM---NSQHTRIGSSSIT 125
+ P AL + ++ Y +A S+ +I++G SQ + +
Sbjct: 78 WQPK----------ALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMA 127
Query: 126 QK----------VVLSGGERKRLSFATELLT------DPALLLCDEPTTGLDSFSASKLI 169
Q VLSGGE++R+ A L P L DEPT+ LD + +
Sbjct: 128 QTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL 187
Query: 170 RMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGSKDAAL 219
R++R+LT Q V C +H L ++ D+I+LLA + G+ + L
Sbjct: 188 RLLRQLTRQEPLAVCCVLH--DLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 21/201 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
+G VA++G SG+GKST+ A+L R D I +G I ++G + R+ + Q
Sbjct: 368 AGKTVALVGRSGSGKSTI-ASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQ 424
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+ LF+ TV ++ + + R +++ R+A + ++ N T IG +
Sbjct: 425 NVHLFND--TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD--NGLDTIIGENG-- 478
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
V+LSGG+R+R++ A LL D +L+ DE T+ LD+ S + + EL Q+ +T L
Sbjct: 479 --VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLV 534
Query: 186 TIHQPSSELIDMFDKIILLAD 206
H+ S+ I+ D+I+++ D
Sbjct: 535 IAHRLST--IEQADEIVVVED 553
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 29/210 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALS--QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G + ++G SG GK+T L ++ + + I GD V P + + ++Q
Sbjct: 38 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR---NISMVFQSYA 94
Query: 71 FSPSLTVYEHLYFMALLK------LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
P +TVYE++ F +K +D+RV+ + I LL R +
Sbjct: 95 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL----------NRYPAQ-- 142
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+R+R++ A ++ +P +LL DEP + LD+ + +++L + K T +
Sbjct: 143 -----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 197
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGS 214
H E + M D+I ++ + IGS
Sbjct: 198 YVTHD-QVEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 30/210 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDL 70
+G + ++G +G+GK+TLL L+ L G+I ++G P + R G+++Q+
Sbjct: 36 TGKIYVVVGKNGSGKTTLLKILAGLLA----AAGEIFLDGSPADPFLLRKNVGYVFQN-- 89
Query: 71 FSPS-----LTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
PS TV E + F + ++ LD + +RI + L+ GL +
Sbjct: 90 --PSSQIIGATVEEDVAFSLEIMGLDES-EMRKRIKKVLELVGLSGL-----------AA 135
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ LSGG+++RL+ A+ L D L DEP + LD S ++ +++ L ++ K +L
Sbjct: 136 ADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIIL 195
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGS 214
T H+ E +D D I+ +++ F GS
Sbjct: 196 VT-HE--LEYLDDMDFILHISNGTIDFCGS 222
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 29/210 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALS--QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G + ++G SG GK+T L ++ + + I GD V P + + ++Q
Sbjct: 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR---NISMVFQSYA 93
Query: 71 FSPSLTVYEHLYFMALLK------LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
P +TVYE++ F +K +D+RV+ + I LL R +
Sbjct: 94 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL----------NRYPAQ-- 141
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+R+R++ A ++ +P +LL DEP + LD+ + +++L + K T +
Sbjct: 142 -----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGS 214
H E + M D+I ++ + IGS
Sbjct: 197 YVTHD-QVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G +V ++GA+GAGK+T L+A++ R II + KP R + +
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQR-IALINSLLIELGLMNSQHTRIGSSSITQKVV 129
P LTVYE+L A + D+ + +R + I SL L + ++G +
Sbjct: 92 IFPELTVYENLXXGAYNRKDK--EGIKRDLEWIFSLFPRL---KERLKQLGGT------- 139
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGGE++ L+ L + P LL DEP+ GL S++ +++++ +Q T+L
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLV 195
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 109/215 (50%), Gaps = 20/215 (9%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMY 66
+ G +A++G SGAGKST+L L R D I G IR++G+ + + RS G +
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLLF-RFYD--ISSGCIRIDGQDISQVTQASLRSHIGVVP 134
Query: 67 QHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q LF+ T+ +++ + + + V+A + A I+ + + T++G +
Sbjct: 135 QDTVLFND--TIADNIRYGRVTAGNDEVEAAAQAAGIHDAI--MAFPEGYRTQVGERGLK 190
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGGE++R++ A +L P ++L DE T+ LD+ + + + ++ + R T +
Sbjct: 191 ----LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR--TTIV 244
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ + D+I+++ D G +A L+
Sbjct: 245 VAHRLST--VVNADQILVIKDGCIVERGRHEALLS 277
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 46/230 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDD--CIIDGDIRVNGKPVEGKFRSACGFMYQH 68
G ++ I+G SG+GKSTL L QR +P++ +IDG P R G + Q
Sbjct: 29 GEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADP--NWLRRQVGVVLQD 85
Query: 69 D------------LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
+ L +P ++V + +Y L A + + EL
Sbjct: 86 NVLLNRSIIDNISLANPGMSVEKVIYAAKL-------------AGAHDFISEL------- 125
Query: 117 TRIGSSSIT--QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
R G ++I Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M +
Sbjct: 126 -REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 184
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 224
+ R TV+ H+ S+ + D+II++ + G L+ ES
Sbjct: 185 ICKGR--TVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 230
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 46/230 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDD--CIIDGDIRVNGKPVEGKFRSACGFMYQH 68
G ++ I+G SG+GKSTL L QR +P++ +IDG P R G + Q
Sbjct: 31 GEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADP--NWLRRQVGVVLQD 87
Query: 69 D------------LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
+ L +P ++V + +Y L A + + EL
Sbjct: 88 NVLLNRSIIDNISLANPGMSVEKVIYAAKL-------------AGAHDFISEL------- 127
Query: 117 TRIGSSSIT--QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
R G ++I Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M +
Sbjct: 128 -REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 186
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 224
+ R TV+ H+ S+ + D+II++ + G L+ ES
Sbjct: 187 ICKGR--TVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 232
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 46/230 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDD--CIIDGDIRVNGKPVEGKFRSACGFMYQH 68
G ++ I+G SG+GKSTL L QR +P++ +IDG P R G + Q
Sbjct: 35 GEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADP--NWLRRQVGVVLQD 91
Query: 69 D------------LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
+ L +P ++V + +Y L A + + EL
Sbjct: 92 NVLLNRSIIDNISLANPGMSVEKVIYAAKL-------------AGAHDFISEL------- 131
Query: 117 TRIGSSSIT--QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
R G ++I Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M +
Sbjct: 132 -REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 224
+ R TV+ H+ S+ + D+II++ + G L+ ES
Sbjct: 191 ICKGR--TVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 22/191 (11%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDC-IIDGDIRVNGKPV----EGKFRS----- 60
L ++ AI+G S +GKST++ A+++ LP + I+ G + GK + E + R
Sbjct: 32 LENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKE 91
Query: 61 -ACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
A +P++ V EH V+A+ + +S LIE + R+
Sbjct: 92 IALVPQAAQQSLNPTMKVIEHF--------KDTVEAHG-VRWSHSELIEKASEKLRMVRL 142
Query: 120 GSSSI--TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
++ + + LSGG ++R+ A LL DP +L+ DEPT+ LD + + +I++++EL
Sbjct: 143 NPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKK 202
Query: 178 QRKKTVLCTIH 188
K T++ H
Sbjct: 203 MLKITLIFVTH 213
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 21/189 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG------KPVEGKFRSACGFM 65
SG++ A++G SG+GKST+L+ L RL D G I ++G PV RS G +
Sbjct: 369 SGSVTALVGPSGSGKSTVLSLL-LRLYDPA--SGTISLDGHDIRQLNPVW--LRSKIGTV 423
Query: 66 YQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI-NSLLIELGLMNSQHTRIGSSS 123
Q LFS S+ E++ + A + QR+A + N++ +T +G
Sbjct: 424 SQEPILFSCSIA--ENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE-- 479
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ V+LSGG+++R++ A LL +P +LL DE T+ LD+ + + + L R TV
Sbjct: 480 --KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGR--TV 535
Query: 184 LCTIHQPSS 192
L H+ S+
Sbjct: 536 LVIAHRLST 544
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 19/188 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG------KPVEGKFRSACGFM 65
SG++ A++G SG+GKST+L+ L RL D G I ++G PV RS G +
Sbjct: 400 SGSVTALVGPSGSGKSTVLSLL-LRLYDPA--SGTISLDGHDIRQLNPVW--LRSKIGTV 454
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI-NSLLIELGLMNSQHTRIGSSSI 124
Q + S ++ E++ + A + QR+A + N++ +T +G
Sbjct: 455 SQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE--- 510
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ V+LSGG+++R++ A LL +P +LL DE T+ LD+ + + + L R TVL
Sbjct: 511 -KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGR--TVL 567
Query: 185 CTIHQPSS 192
H S+
Sbjct: 568 VIAHHLST 575
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 46/230 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDD--CIIDGDIRVNGKPVEGKFRSACGFMYQH 68
G ++ I+G +G+GKSTL L QR +P++ +IDG P R G + Q
Sbjct: 31 GEVIGIVGRAGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADP--NWLRRQVGVVLQD 87
Query: 69 D------------LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
+ L +P ++V + +Y L A + + EL
Sbjct: 88 NVLLNRSIIDNISLANPGMSVEKVIYAAKL-------------AGAHDFISEL------- 127
Query: 117 TRIGSSSIT--QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
R G ++I Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M +
Sbjct: 128 -REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 186
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 224
+ R TV+ H+ S+ + D+II++ + G L+ ES
Sbjct: 187 ICKGR--TVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 232
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 46/230 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDD--CIIDGDIRVNGKPVEGKFRSACGFMYQH 68
G ++ I+G SG+GKSTL L QR +P++ +IDG P R G + Q
Sbjct: 35 GEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADP--NWLRRQVGVVLQD 91
Query: 69 D------------LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
+ L +P ++V + +Y L A + + EL
Sbjct: 92 NVLLNRSIIDNISLANPGMSVEKVIYAAKL-------------AGAHDFISEL------- 131
Query: 117 TRIGSSSIT--QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
R G ++I Q LSGG+R+R++ A L+ +P +L+ D+ T+ LD S ++R M +
Sbjct: 132 -REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHK 190
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 224
+ R TV+ H+ S+ + D+II++ + G L+ ES
Sbjct: 191 ICKGR--TVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 14/221 (6%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-----EGKFRSACGFMY 66
G + A+MG +GAGKSTL L+ P+ + G+I ++G+ + + + R +
Sbjct: 28 KGEVHALMGPNGAGKSTLGKILAGD-PEYTVERGEILLDGENILELSPDERARKGLFLAF 86
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q+ + P +T+ L KL R V + + L L S +R +
Sbjct: 87 QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEG--- 143
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
SGGE+KR L+ +P + DE +GLD + + R + + ++ T
Sbjct: 144 ---FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVIT 200
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGY 227
+Q I DK+ ++ D R G + AL LE++GY
Sbjct: 201 HYQRILNYIQP-DKVHVMMDGRVVATGGPELALE-LEAKGY 239
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 25/151 (16%)
Query: 44 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEH-----LYFMALLKLDRRVKAYQR 98
DG ++V K R+ ++QH +TV E+ + + L K D R +A +
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKY 136
Query: 99 IALINSLLIELGLMNSQHTRIGSSSITQ---KVVLSGGERKRLSFATELLTDPALLLCDE 155
+A ++G Q V LSGG+++R+S A L +P +LL DE
Sbjct: 137 LA-----------------KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 179
Query: 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
PT+ LD +++R+M++L + K V+ T
Sbjct: 180 PTSALDPELVGEVLRIMQQLAEEGKTMVVVT 210
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 46/230 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDD--CIIDGDIRVNGKPVEGKFRSACGFMYQH 68
G ++ I+G SG+GKSTL L QR +P++ +IDG P R G + Q
Sbjct: 29 GEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADP--NWLRRQVGVVLQD 85
Query: 69 D------------LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
+ L +P ++V + +Y L A + + EL
Sbjct: 86 NVLLNRSIIDNISLANPGMSVEKVIYAAKL-------------AGAHDFISEL------- 125
Query: 117 TRIGSSSIT--QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
R G ++I Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M +
Sbjct: 126 -REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 184
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 224
+ R TV+ + S+ + D+II++ + G L+ ES
Sbjct: 185 ICKGR--TVIIIAARLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 230
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 46/230 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDD--CIIDGDIRVNGKPVEGKFRSACGFMYQH 68
G ++ I+G SG+GKSTL L QR +P++ +IDG P R G + Q
Sbjct: 35 GEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADP--NWLRRQVGVVLQD 91
Query: 69 D------------LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
+ L +P ++V + +Y L A + + EL
Sbjct: 92 NVLLNRSIIDNISLANPGMSVEKVIYAAKL-------------AGAHDFISEL------- 131
Query: 117 TRIGSSSIT--QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
R G ++I Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M +
Sbjct: 132 -REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 224
+ R TV+ + S+ + D+II++ + G L+ ES
Sbjct: 191 ICKGR--TVIIIAARLST--VKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 30/179 (16%)
Query: 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-----PVEGKFRSACGFMYQHDLFS 72
++G +GAGKS L ++ + D G++R+NG P E R GF+ Q
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPE---RRGIGFVPQDYALF 82
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG---LMNSQHTRIGSSSITQKVV 129
P L+VY ++ + R V+ +R + + +LG L++ + R
Sbjct: 83 PHLSVYRNIAYGL-----RNVERVERDRRVREMAEKLGIAHLLDRKPAR----------- 126
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGGER+R++ A L+ P LLL DEP + +D + L+ +R + + +L H
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G ++A++G +G GKSTLL D ++ +P++GK +YQ F
Sbjct: 31 GDILAVLGQNGCGKSTLL---------DLLLGIH-----RPIQGKIE-----VYQSIGFV 71
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
P Y + + L R A S ++ + + + + + LSG
Sbjct: 72 PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSG 131
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G+R+ + A + ++ L+L DEPT+ LD + ++ ++ +L + TV+ T HQP +
Sbjct: 132 GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-N 190
Query: 193 ELIDMFDKIILLADSRTAF 211
+++ + +K +LL F
Sbjct: 191 QVVAIANKTLLLNKQNFKF 209
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 29/182 (15%)
Query: 8 GAALSGTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVEGKFRSACGFMY 66
G G ++ I+G +G GK+T + L+ P + I+ D+ V KP
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKP------------- 353
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q+ TVYE L + KL+ Y+ LL LG+++ +
Sbjct: 354 QYIKADYEGTVYELLSKIDASKLNSNF--YK-----TELLKPLGIIDLYDREVNE----- 401
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGGE +R++ A LL D + L DEP+ LD + R +R L + +KT L
Sbjct: 402 ---LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 187 IH 188
H
Sbjct: 459 EH 460
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 12 SGTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G +V I+G +G GKST + L+ Q +P+ C GD +G R+ G Q+
Sbjct: 46 EGXVVGIVGPNGTGKSTAVKILAGQLIPNLC---GD----NDSWDGVIRAFRGNELQN-- 96
Query: 71 FSPSLTVYEHLYFMALLKLD-RRVKAYQRIALI----NSLLIEL-------GLMNSQHTR 118
YF L + R V Q + LI +IEL G +
Sbjct: 97 -----------YFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKA 145
Query: 119 IGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
+ ++ ++ + LSGGE +R++ A LL + DEP++ LD R +R L
Sbjct: 146 LELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL- 204
Query: 177 SQRKKTVLCTIH 188
S+ K+VL H
Sbjct: 205 SEEGKSVLVVEH 216
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 101/198 (51%), Gaps = 21/198 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G VA++G SG+GKST+ A L R D + G I ++G V R + Q+
Sbjct: 369 GKTVALVGRSGSGKSTI-ANLFTRFYD--VDSGSICLDGHDVRDYKLTNLRRHFALVSQN 425
Query: 69 -DLFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
LF+ T+ ++ + A + R +++ R A +++ + T IG + +
Sbjct: 426 VHLFND--TIANNIAYAAEGEYTREQIEQAARQA--HAMEFIENMPQGLDTVIGENGTS- 480
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+R+R++ A LL D +L+ DE T+ LD+ S + + EL Q+ KTVL
Sbjct: 481 ---LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL--QKNKTVLVI 535
Query: 187 IHQPSSELIDMFDKIILL 204
H+ S+ I+ D+I+++
Sbjct: 536 AHRLST--IEQADEILVV 551
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 30/165 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G +A++G SG GKST++A L +R D + G+I ++G ++ RS + Q
Sbjct: 1105 GQTLALVGPSGCGKSTVVALL-ERFYDT--LGGEIFIDGSEIKTLNPEHTRSQIAIVSQE 1161
Query: 69 DLFSPSL---TVYEHLYFMALLKLD------RRVKAYQRIALINSLLIELGLMNSQHTRI 119
P+L ++ E++ + LD +V+ R+A I++ + EL TR+
Sbjct: 1162 ----PTLFDCSIAENIIY----GLDPSSVTMAQVEEAARLANIHNFIAELP--EGFETRV 1211
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
G TQ LSGG+++R++ A L+ +P +LL DE T+ LD+ S
Sbjct: 1212 GDRG-TQ---LSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 24/216 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG---KPVEGKF-RSACGFMYQ 67
+G VA++G+SG GKST+++ L R D ++ G I ++G + + +F R + Q
Sbjct: 443 AGQTVALVGSSGCGKSTIISLL-LRYYD--VLKGKITIDGVDVRDINLEFLRKNVAVVSQ 499
Query: 68 HDLFSPSL---TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
P+L T+ E++ + A ++A N+ L N +T +G
Sbjct: 500 E----PALFNCTIEENISLGKEGITREEMVAACKMA--NAEKFIKTLPNGYNTLVGDRG- 552
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
TQ LSGG+++R++ A L+ +P +LL DE T+ LD+ S + + + + + + +T +
Sbjct: 553 TQ---LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK--AAKGRTTI 607
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I D II + + +G A +A
Sbjct: 608 IIAHRLST--IRNADLIISCKNGQVVEVGDHRALMA 641
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 19/219 (8%)
Query: 2 TELELTGAALS---GTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVEGK 57
T+ L+G S G+LVA++G +G+GKSTL+ + + + P+ ++ D ++ + V+ K
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVD-ELDVRTVKLK 413
Query: 58 -FRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
R + Q LFS T+ E+L + D + +IA I+ +I L
Sbjct: 414 DLRGHISAVPQETVLFSG--TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDS 471
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
G + SGG+++RLS A L+ P +L+ D+ T+ +D + +++ ++
Sbjct: 472 RVERGGRN------FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY 525
Query: 176 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
T + T + T P++ L DKI++L + + A G+
Sbjct: 526 T-KGCTTFIITQKIPTALLA---DKILVLHEGKVAGFGT 560
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 33/208 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVEGKFRS------ACGFM 65
G ++ I+GASG GK+TLL L+ PD G+I ++GK + K + G++
Sbjct: 30 GEILFIIGASGCGKTTLLRCLAGFEQPDS----GEISLSGKTIFSKNTNLPVRERRLGYL 85
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q + P LTVY ++ + R + QRI ++EL T I +
Sbjct: 86 VQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRI----EAMLEL-------TGISELAGR 134
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE-----LTSQRK 180
LSGG+++R + A L DP L+L DEP + LD +L R +RE L + K
Sbjct: 135 YPHELSGGQQQRAALARALAPDPELILLDEPFSALD----EQLRRQIREDMIAALRANGK 190
Query: 181 KTVLCTIHQPSSELIDMFDKIILLADSR 208
V + E + D+I ++ R
Sbjct: 191 SAVF--VSHDREEALQYADRIAVMKQGR 216
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 16/158 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
SG VA++G SG GKST + L QRL D +DG + ++G+ + R G + Q
Sbjct: 415 SGQTVALVGNSGCGKSTTVQ-LMQRLYDP--LDGMVSIDGQDIRTINVRYLREIIGVVSQ 471
Query: 68 HDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
+ + T+ E++ Y + +D KA + N+ + L + T +G
Sbjct: 472 EPVLFAT-TIAENIRYGREDVTMDEIEKAVKEA---NAYDFIMKLPHQFDTLVGERGAQ- 526
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
LSGG+++R++ A L+ +P +LL DE T+ LD+ S
Sbjct: 527 ---LSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 30/219 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G +A++G+SG GKST++ L +R D + G + ++GK ++ R+ G + Q
Sbjct: 1059 GQTLALVGSSGCGKSTVVQLL-ERFYDP--MAGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115
Query: 69 D-LFSPSLTVYEHLYFMALLKLDRRVKAYQRI------ALINSLLIELGLMNSQHTRIGS 121
LF S+ E++ + + RV +Y+ I A I+ + L + +TR+G
Sbjct: 1116 PILFDCSIA--ENIAYGD----NSRVVSYEEIVRAAKEANIHQFIDSLP--DKYNTRVGD 1167
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
TQ LSGG+++R++ A L+ P +LL DE T+ LD+ S ++++E + ++
Sbjct: 1168 KG-TQ---LSGGQKQRIAIARALVRQPHILLLDEATSALDTESE----KVVQEALDKARE 1219
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
C + I D I+++ + + G+ LA
Sbjct: 1220 GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 16/158 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
SG VA++G SG GKST + L QRL D +DG + ++G+ + R G + Q
Sbjct: 415 SGQTVALVGNSGCGKSTTVQ-LMQRLYDP--LDGMVSIDGQDIRTINVRYLREIIGVVSQ 471
Query: 68 HDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
+ + T+ E++ Y + +D KA + N+ + L + T +G
Sbjct: 472 EPVLFAT-TIAENIRYGREDVTMDEIEKAVKEA---NAYDFIMKLPHQFDTLVGERGAQ- 526
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
LSGG+++R++ A L+ +P +LL DE T+ LD+ S
Sbjct: 527 ---LSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 30/219 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G +A++G+SG GKST++ L +R D + G + ++GK ++ R+ G + Q
Sbjct: 1059 GQTLALVGSSGCGKSTVVQLL-ERFYDP--MAGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115
Query: 69 D-LFSPSLTVYEHLYFMALLKLDRRVKAYQRI------ALINSLLIELGLMNSQHTRIGS 121
LF S+ E++ + + RV +Y+ I A I+ + L + +TR+G
Sbjct: 1116 PILFDCSIA--ENIAYGD----NSRVVSYEEIVRAAKEANIHQFIDSLP--DKYNTRVGD 1167
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
TQ LSGG+++R++ A L+ P +LL DE T+ LD+ S ++++E + ++
Sbjct: 1168 KG-TQ---LSGGQKQRIAIARALVRQPHILLLDEATSALDTESE----KVVQEALDKARE 1219
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
C + I D I+++ + + G+ LA
Sbjct: 1220 GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 115/287 (40%), Gaps = 28/287 (9%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKF----RSACGF 64
G + ++G SG GK+T L A L + I+ ++ + P +G F
Sbjct: 31 DGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVAD--PEKGVFVPPKERDVAX 88
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P TVY+++ F L+ + + +R+ + L L+N +
Sbjct: 89 VFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRE------ 142
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+R+R++ ++ P + L DEP + LD+ K +++L Q T +
Sbjct: 143 -----LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTI 197
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLA 244
H E D+I + +G+ D + G P +FL A
Sbjct: 198 YVTHD-QVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTFVAGFIGSPPXNFLD---A 253
Query: 245 VTTNDEL--SSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTYDVH 289
T+D +LK + D+F V + V E+ + + DVH
Sbjct: 254 TITDDGFLDFGEFKLKLLQDQFEVLEEENXVGKEVIF--GIRPEDVH 298
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 31/184 (16%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSA 61
L+G +G ++ ++G +GAGKSTLLA R G I+ G+P+E K
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA----RXAGXTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++ Q + V+ +++ L + D+ R L+N + L L + ++G
Sbjct: 75 RAYLSQQQTPPFATPVW---HYLTLHQHDK-----TRTELLNDVAGALALDD----KLGR 122
Query: 122 SSITQKVVLSGGERKRLSFATELL-----TDPA--LLLCDEPTTGLDSFSASKLIRMMRE 174
S+ LSGGE +R+ A +L +PA LLL DEP LD S L +++
Sbjct: 123 STNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSA 178
Query: 175 LTSQ 178
L+ Q
Sbjct: 179 LSQQ 182
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 29/182 (15%)
Query: 8 GAALSGTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVEGKFRSACGFMY 66
G G ++ I+G +G GK+T + L+ P + ++ D+ V KP
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP------------- 423
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q+ TVYE L + KL+ Y+ LL LG+++ +
Sbjct: 424 QYIKAEYEGTVYELLSKIDSSKLNSNF--YK-----TELLKPLGIIDLYDRNVED----- 471
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGGE +R++ A LL D + L DEP+ LD + R +R L + +KT L
Sbjct: 472 ---LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 187 IH 188
H
Sbjct: 529 EH 530
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G +V I+G +G GK+T + L+ +L + D D N V FR Y L +
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN---VIRAFRGNELQNYFERLKN 173
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV--L 130
+ ++ LL + K + + ++ E+G + ++ + + L
Sbjct: 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----EVGKFEEVVKELELENVLDRELHQL 229
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
SGGE +R++ A LL DEP++ LD K+ R++R L ++ K VL H
Sbjct: 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEH 286
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 23/209 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G LVA++G G GKS+LL+AL + ++G + + G + ++ Q
Sbjct: 31 GALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG---------SVAYVPQQAWIQ 78
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
++ E++ F L+ Q AL+ L I L + T IG + LSG
Sbjct: 79 ND-SLRENILFGCQLEEPYYRSVIQACALLPDLEI---LPSGDRTEIGEKGVN----LSG 130
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPS 191
G+++R+S A + ++ + L D+P + +D+ + ++ + KT + H S
Sbjct: 131 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH--S 188
Query: 192 SELIDMFDKIILLADSRTAFIGSKDAALA 220
+ D II+++ + + +GS LA
Sbjct: 189 MSYLPQVDVIIVMSGGKISEMGSYQELLA 217
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 29/182 (15%)
Query: 8 GAALSGTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVEGKFRSACGFMY 66
G G ++ I+G +G GK+T + L+ P + ++ D+ V KP
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP------------- 409
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q+ TVYE L + KL+ Y+ LL LG+++ +
Sbjct: 410 QYIKAEYEGTVYELLSKIDSSKLNSNF--YK-----TELLKPLGIIDLYDRNVED----- 457
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGGE +R++ A LL D + L DEP+ LD + R +R L + +KT L
Sbjct: 458 ---LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
Query: 187 IH 188
H
Sbjct: 515 EH 516
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G +V I+G +G GK+T + L+ +L + D D N V FR Y L +
Sbjct: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN---VIRAFRGNELQNYFERLKN 159
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV--L 130
+ ++ LL + K + + ++ E+G + ++ + + L
Sbjct: 160 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----EVGKFEEVVKELELENVLDRELHQL 215
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
SGGE +R++ A LL DEP++ LD K+ R++R L ++ K VL H
Sbjct: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEH 272
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 31/184 (16%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSA 61
L+G +G ++ ++G +GAGKSTLLA R G I+ G+P+E K
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA----RXAGXTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++ Q + V+ +++ L + D+ R L+N + L L + ++G
Sbjct: 75 RAYLSQQQTPPFATPVW---HYLTLHQHDK-----TRTELLNDVAGALALDD----KLGR 122
Query: 122 SSITQKVVLSGGERKRLSFATELL-----TDPA--LLLCDEPTTGLDSFSASKLIRMMRE 174
S+ LSGGE +R+ A +L +PA LLL DEP LD S L +++
Sbjct: 123 STNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSA 178
Query: 175 LTSQ 178
L Q
Sbjct: 179 LCQQ 182
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 31/192 (16%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSA 61
L+G +G ++ ++G +GAGKSTLLA R+ G I+ G+P+E K
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA----RMAGMTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++ Q + V+ +++ L + D+ R L+N + L L + ++G
Sbjct: 75 RAYLSQQQTPPFATPVW---HYLTLHQHDK-----TRTELLNDVAGALALDD----KLGR 122
Query: 122 SSITQKVVLSGGERKRLSFATELL-----TDPA--LLLCDEPTTGLDSFSASKLIRMMRE 174
S+ LSGGE +R+ A +L +PA LLL D+P LD S L +++
Sbjct: 123 STNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSA 178
Query: 175 LTSQRKKTVLCT 186
L+ Q V+ +
Sbjct: 179 LSQQGLAIVMSS 190
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 31/192 (16%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSA 61
L+G +G ++ ++G +GAGKSTLLA R+ G I+ G+P+E K
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA----RMAGMTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++ Q + V+ +++ L + D+ R L+N + L L + ++G
Sbjct: 75 RAYLSQQQTPPFATPVW---HYLTLHQHDK-----TRTELLNDVAGALALDD----KLGR 122
Query: 122 SSITQKVVLSGGERKRLSFATELL-----TDPA--LLLCDEPTTGLDSFSASKLIRMMRE 174
S+ LSGGE +R+ A +L +PA LLL D+P LD S L +++
Sbjct: 123 STNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSA 178
Query: 175 LTSQRKKTVLCT 186
L+ Q V+ +
Sbjct: 179 LSQQGLAIVMSS 190
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 33/191 (17%)
Query: 12 SGTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
+ T++ ++G +G GK+T+L L+ + +P+ D + +V V +FR + Y +L
Sbjct: 24 NNTILGVLGKNGVGKTTVLKILAGEIIPN--FGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81
Query: 71 FSPSLTVYEHLYFMA-------------LLKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
+S L + + ++ L K+D R K + + LL L N
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDE----VKELLNMTNLWNKDAN 137
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
+LSGG +RL A LL + + + D+P++ LD + + +REL
Sbjct: 138 -----------ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL- 185
Query: 178 QRKKTVLCTIH 188
+ K V+ H
Sbjct: 186 -KNKYVIVVDH 195
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGGE ++L A L + L + D+P++ LD + + ++ +T +RK H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 190 PS 191
S
Sbjct: 446 LS 447
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 103/249 (41%), Gaps = 46/249 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--CGFMYQHDL 70
G L+A+ G++GAGK++LL + L +P EGK + + F Q
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGEL--------------EPSEGKIKHSGRISFCSQFSW 109
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL---MNSQHTRIGSSSITQK 127
P T+ E++ +A + D Y+ ++I + +E + + +G IT
Sbjct: 110 IMPG-TIKENI--IAGVSYDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT-- 160
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R R+S A + D L L D P LD + ++ K +L T
Sbjct: 161 --LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT- 217
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 247
E + DKI++L + + F G+ F E Q DF K + +
Sbjct: 218 --SKMEHLKKADKILILHEGSSYFYGT------FSELQNL-------QPDFSSKLMGCDS 262
Query: 248 NDELSSRRR 256
D+ S+ RR
Sbjct: 263 FDQFSAERR 271
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 45/248 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--CGFMYQHDL 70
G L+A+ G++GAGK++LL + L +P EGK + + F Q+
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGEL--------------EPSEGKIKHSGRISFCSQNSW 109
Query: 71 FSPSLTVYEHLYFMALLKLDRR--VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
P T+ E++ ++ + R +KA Q I+ + +G IT
Sbjct: 110 IMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKF------AEKDNIVLGEGGIT--- 159
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+R R+S A + D L L D P LD + ++ K +L T
Sbjct: 160 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT-- 216
Query: 189 QPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTN 248
E + DKI++L + + F G+ F E Q DF K + +
Sbjct: 217 -SKMEHLKKADKILILHEGSSYFYGT------FSELQNL-------RPDFSSKLMGCDSF 262
Query: 249 DELSSRRR 256
D+ S+ RR
Sbjct: 263 DQFSAERR 270
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 45/248 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--CGFMYQHDL 70
G L+A+ G++GAGK++LL + L +P EGK + + F Q+
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGEL--------------EPSEGKIKHSGRISFCSQNSW 109
Query: 71 FSPSLTVYEHLYFMALLKLDRR--VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
P T+ E++ ++ + R +KA Q I+ + +G IT
Sbjct: 110 IMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKF------AEKDNIVLGEGGIT--- 159
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+R R+S A + D L L D P LD + ++ K +L T
Sbjct: 160 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT-- 216
Query: 189 QPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTN 248
E + DKI++L + + F G+ F E Q DF K + +
Sbjct: 217 -SKMEHLKKADKILILHEGSSYFYGT------FSELQNL-------RPDFSSKLMGCDSF 262
Query: 249 DELSSRRR 256
D+ S+ RR
Sbjct: 263 DQFSAERR 270
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 33/207 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--CGFMYQHDL 70
G L+A+ G++GAGK++LL + L +P EGK + + F Q
Sbjct: 46 GQLLAVAGSTGAGKTSLLMMIMGEL--------------EPSEGKIKHSGRISFCSQFSW 91
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL---MNSQHTRIGSSSITQK 127
P T+ E++ F Y+ ++I + +E + + +G IT
Sbjct: 92 IMPG-TIKENIIFGV------SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT-- 142
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R R+S A + D L L D P LD + ++ K +L T
Sbjct: 143 --LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT- 199
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGS 214
E + DKI++L + + F G+
Sbjct: 200 --SKMEHLKKADKILILHEGSSYFYGT 224
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 39/259 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G ++AI G++G+GK++LL + L +G I+ +G+ F Q
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR---------VSFCSQFSWIM 111
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
P T+ E++ F + + R K+ + + + + +T +G +T LSG
Sbjct: 112 PG-TIKENIIF-GVSYDEYRYKSVVKACQLQQDITKFA--EQDNTVLGEGGVT----LSG 163
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT---SKM 220
Query: 193 ELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELS 252
E + DKI++L + F G+ F E Q DF K + T D+ +
Sbjct: 221 EHLRKADKILILHQGSSYFYGT------FSELQSL-------RPDFSSKLMGYDTFDQFT 267
Query: 253 SRRR---LKRICDEFSVCD 268
RR L FSV D
Sbjct: 268 EERRSSILTETLRRFSVDD 286
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 22/210 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD---CIIDG-DIRVNGKPVEGKFRSACGFMYQH 68
G VA++G +G+GK+T++ L + D ++DG DIR K RS+ G + Q
Sbjct: 381 GQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR---KIKRSSLRSSIGIVLQ- 436
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT--Q 126
D S TV E+L + D +K ++ + + +H G ++
Sbjct: 437 DTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFI--------KHLPEGYETVLTDN 488
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LS G+R+ L+ L +P +L+ DE T+ +D+ + + M +L KT +
Sbjct: 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL--MEGKTSIII 546
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKD 216
H+ ++ I D II+L D +G D
Sbjct: 547 AHRLNT--IKNADLIIVLRDGEIVEMGKHD 574
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 33/207 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--CGFMYQHDL 70
G L+A+ G++GAGK++LL + L +P EGK + + F Q
Sbjct: 34 GQLLAVAGSTGAGKTSLLMMIMGEL--------------EPSEGKIKHSGRISFCSQFSW 79
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL---MNSQHTRIGSSSITQK 127
P T+ E++ F Y+ ++I + +E + + +G IT
Sbjct: 80 IMPG-TIKENIIFGV------SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT-- 130
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R R+S A + D L L D P LD + ++ K +L T
Sbjct: 131 --LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT- 187
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGS 214
E + DKI++L + + F G+
Sbjct: 188 --SKMEHLKKADKILILHEGSSYFYGT 212
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 36/244 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G ++AI G++G+GK++LL + L +G I+ +G+ F Q
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR---------VSFCSQFSWIM 111
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
P T+ E++ F + + R K+ + + + + +T +G +T LSG
Sbjct: 112 PG-TIKENIIF-GVSYDEYRYKSVVKACQLQQDITKFA--EQDNTVLGEGGVT----LSG 163
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT---SKM 220
Query: 193 ELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELS 252
E + DKI++L + F G+ F E Q DF K + T D+ +
Sbjct: 221 EHLRKADKILILHQGSSYFYGT------FSELQSL-------RPDFSSKLMGYDTFDQFT 267
Query: 253 SRRR 256
RR
Sbjct: 268 EERR 271
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 27/195 (13%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
LT G + A++G +G+GKST+ AAL Q L G + ++G+P+
Sbjct: 38 LTFTLYPGKVTALVGPNGSGKSTV-AALLQNLYQPT--GGKVLLDGEPL---------VQ 85
Query: 66 YQHDLFSPSLTVY--EHLYFMALLKLD-----RRVKAYQRIALI----NSLLIELGLMNS 114
Y H + E L F + + R + I + + G
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQG 145
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
T +G + LSGG+R+ ++ A L+ P LL+ D+ T+ LD+ + ++ R++ E
Sbjct: 146 YDTEVGETGNQ----LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYE 201
Query: 175 LTSQRKKTVLCTIHQ 189
+TVL HQ
Sbjct: 202 SPEWASRTVLLITHQ 216
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 32/206 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--CGFMYQHDL 70
G L+A+ G++GAGK++LL + L +P EGK + + F Q
Sbjct: 34 GQLLAVAGSTGAGKTSLLMMIMGEL--------------EPSEGKIKHSGRISFCSQFSW 79
Query: 71 FSPSLTVYEHLYFMALLKLDRR--VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
P T+ E++ ++ + R +KA Q I+ + +G IT
Sbjct: 80 IMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKF------AEKDNIVLGEGGIT--- 129
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+R R+S A + D L L D P LD + ++ K +L T
Sbjct: 130 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT-- 186
Query: 189 QPSSELIDMFDKIILLADSRTAFIGS 214
E + DKI++L + + F G+
Sbjct: 187 -SKMEHLKKADKILILHEGSSYFYGT 211
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 105/259 (40%), Gaps = 40/259 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G ++AI G++G+GK++LL + L +G I+ +G+ F Q
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR---------VSFCSQFSWIM 111
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
P T+ E++ + + + R K+ + + + + +T +G +T LSG
Sbjct: 112 PG-TIKENI--IGVSYDEYRYKSVVKACQLQQDITKFA--EQDNTVLGEGGVT----LSG 162
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT---SKM 219
Query: 193 ELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELS 252
E + DKI++L + F G+ F E Q DF K + T D+ +
Sbjct: 220 EHLRKADKILILHQGSSYFYGT------FSELQSL-------RPDFSSKLMGYDTFDQFT 266
Query: 253 SRRR---LKRICDEFSVCD 268
RR L FSV D
Sbjct: 267 EERRSSILTETLRRFSVDD 285
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 19/198 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKF--RSACGFMYQ 67
G + A++G +G+GKST+ AAL Q L G + ++GKP+ E ++ R +
Sbjct: 43 GEVTALVGPNGSGKSTV-AALLQNLYQPT--GGQLLLDGKPLPQYEHRYLHRQVAAVGQE 99
Query: 68 HDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
+F SL E++ Y + + A + +S + GL T + +
Sbjct: 100 PQVFGRSLQ--ENIAYGLTQKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEAGSQ- 154
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+R+ ++ A L+ P +L+ D+ T+ LD+ S ++ +++ E + ++VL
Sbjct: 155 ---LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLI 211
Query: 187 IHQPSSELIDMFDKIILL 204
S L++ D I+ L
Sbjct: 212 TQHLS--LVEQADHILFL 227
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G +V G +G GK+TLL +S L + G+I NG P+ K + F+ + +
Sbjct: 35 GNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPIT-KVKGKIFFLPEEIIVP 90
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
++V ++L +A L + K AL + +++L ++G LS
Sbjct: 91 RKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------KKKLGE--------LSQ 136
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
G +R+ A+ LL + + + D+P +D S K+++ + E+ ++
Sbjct: 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK 183
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 30/206 (14%)
Query: 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTV 77
+ G +GAGK+TLL L+ P G + + GK GK G+ + TV
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATS---GTVNLFGK-XPGK----VGYSAE--------TV 95
Query: 78 YEHLYFMALLKLDRRVKAYQRI-ALINSLLIELG--------LMNSQHTR---IGSSSIT 125
+H+ F++ L++ + + I +I+ +G + N H +G S+
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKA 155
Query: 126 QKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
Q+ + LS GE++R+ A L P +L+ DEP GLD + L+ ++ L+
Sbjct: 156 QQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLA 215
Query: 184 LCTIHQPSSELIDMFDKIILLADSRT 209
+ E+ F KI+LL D ++
Sbjct: 216 XIYVTHFIEEITANFSKILLLKDGQS 241
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQHD 69
G + ++G +GAGK+T L +S + G + V GK V + R ++ +
Sbjct: 41 GEIFGLIGPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEVRKLISYLPEEA 97
Query: 70 LFSPSLTVYEHLYFMALL------KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++ E+L F+A +++ V+ IA GL R+ +
Sbjct: 98 GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA---------GLGEKIKDRVST-- 146
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
S G ++L A L+ +P L + DEPT+GLD +A ++ +++++ SQ T+
Sbjct: 147 ------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ-ASQEGLTI 199
Query: 184 LCTIHQ 189
L + H
Sbjct: 200 LVSSHN 205
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 87 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL- 145
+ +D ++ ++ I I L L + + ++G + T LSGGE +R+ A+EL
Sbjct: 767 MTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATT----LSGGEAQRIKLASELRK 822
Query: 146 --TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203
T L + DEPT GL KL+ ++ L R TV+ H + ++I D II
Sbjct: 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEH--NLDVIKNADHIID 879
Query: 204 LADSRTAFIGSKDAALAFLESQGYPCPYGYNPADF 238
L G K+ ++ + G P NP +
Sbjct: 880 LGPE-----GGKEG--GYIVATGTPEEIAKNPHSY 907
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 74 SLTVYEHLYFMALLKLDRRVKAY-----QRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
L++ E L F+ L L R + + I L+++GL ++ + S+ T
Sbjct: 411 ELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGL---EYLTLSRSATT--- 464
Query: 129 VLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGGE +R+ AT++ LT + + DEPT GL +LI+ +++L TV+
Sbjct: 465 -LSGGESQRIRLATQIGSGLTG-VIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIV 521
Query: 186 TIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 219
H E+I D II + R F G+ D L
Sbjct: 522 VEH--DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 38/245 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G ++AI G++G+GK++LL + L +G I+ +G+ F Q
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR---------VSFCSQFSWIM 111
Query: 73 PSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
P T+ E++ ++ + D R K+ + + + + +T +G +T LS
Sbjct: 112 PG-TIKENI--ISGVSYDEYRYKSVVKACQLQQDITKFA--EQDNTVLGEGGVT----LS 162
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
GG+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT---SK 219
Query: 192 SELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDEL 251
E + DKI++L + F G+ F E Q DF K + T D+
Sbjct: 220 MEHLRKADKILILHQGSSYFYGT------FSELQSL-------RPDFSSKLMGYDTFDQF 266
Query: 252 SSRRR 256
+ RR
Sbjct: 267 TEERR 271
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 36/244 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G ++AI G++G+GK++LL + L +G I+ +G+ F Q
Sbjct: 64 GEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR---------VSFCSQFSWIM 111
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
P T+ E++ + + R K+ + + + + +T +G +T LSG
Sbjct: 112 PG-TIKENI-IRGVSYDEYRYKSVVKACQLQQDITKFA--EQDNTVLGEGGVT----LSG 163
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT---SKM 220
Query: 193 ELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELS 252
E + DKI++L + F G+ F E Q DF K + T D+ +
Sbjct: 221 EHLRKADKILILHQGSSYFYGT------FSELQSL-------RPDFSSKLMGYDTFDQFT 267
Query: 253 SRRR 256
RR
Sbjct: 268 EERR 271
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 18/224 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-----EGKFRSACGFMYQ 67
G + AIMG +G+GKSTL A L+ R D + G + GK + E + +Q
Sbjct: 27 GEVHAIMGPNGSGKSTLSATLAGR-EDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQ 85
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQ---RIALINSLLIELGLMNSQHTRIGSSSI 124
+ + P ++ + L R + + R + + ++ L+ + S
Sbjct: 86 YPVEIPGVS--NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV- 142
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
V SGGE+KR + +P L + DE +GLD + + + L ++ ++
Sbjct: 143 --NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFII 200
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF-LESQGY 227
T +Q + I D + +L R + S D L LE QGY
Sbjct: 201 VTHYQRILDYIKP-DYVHVLYQGR--IVKSGDFTLVKQLEEQGY 241
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 18/224 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-----EGKFRSACGFMYQ 67
G + AIMG +G+GKSTL A L+ R D + G + GK + E + +Q
Sbjct: 46 GEVHAIMGPNGSGKSTLSATLAGR-EDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQ 104
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQ---RIALINSLLIELGLMNSQHTRIGSSSI 124
+ + P ++ + L R + + R + + ++ L+ + S
Sbjct: 105 YPVEIPGVS--NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV- 161
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
V SGGE+KR + +P L + DE +GLD + + + L ++ ++
Sbjct: 162 --NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFII 219
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA-FLESQGY 227
T +Q + I D + +L R + S D L LE QGY
Sbjct: 220 VTHYQRILDYIKP-DYVHVLYQGR--IVKSGDFTLVKQLEEQGY 260
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 46/249 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--CGFMYQHDL 70
G L+A+ G++GAGK++LL + L +P EGK + + F Q
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGEL--------------EPSEGKIKHSGRISFCSQFSW 109
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL---MNSQHTRIGSSSITQK 127
P T+ E++ F Y+ ++I + +E + + +G IT
Sbjct: 110 IMPG-TIKENIIFGV------SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT-- 160
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LS G++ ++S A + D L L D P LD + ++ K +L T
Sbjct: 161 --LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT- 217
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 247
E + DKI++L + + F G+ F E Q DF K + +
Sbjct: 218 --SKMEHLKKADKILILHEGSSYFYGT------FSELQNL-------QPDFSSKLMGCDS 262
Query: 248 NDELSSRRR 256
D+ S+ RR
Sbjct: 263 FDQFSAERR 271
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 31/188 (16%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACG 63
LE ++G V I+G +G+GK+TLL A+S LP G+I +NG V K R+
Sbjct: 21 LENINLEVNGEKVIILGPNGSGKTTLLRAISGLLP----YSGNIFINGMEVR-KIRNYI- 74
Query: 64 FMYQHDL---FSPSLTVYEHLYFMALLK-LDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
Y +L + +TV + +Y LK LDR L +E+ + ++
Sbjct: 75 -RYSTNLPEAYEIGVTVNDIVYLYEELKGLDR------------DLFLEM----LKALKL 117
Query: 120 GSSSITQKVV-LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
G + +K+ LS G+ + + L + P ++ DEP +D+ + R ++E
Sbjct: 118 GEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG-- 175
Query: 179 RKKTVLCT 186
K+ +L T
Sbjct: 176 -KEGILVT 182
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 27/195 (13%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
LT G + A++G +G+GKST+ AAL Q L G + ++G+P+
Sbjct: 38 LTFTLYPGKVTALVGPNGSGKSTV-AALLQNLYQPT--GGKVLLDGEPL---------VQ 85
Query: 66 YQHDLFSPSLTVY--EHLYFMALLKLD-----RRVKAYQRIALI----NSLLIELGLMNS 114
Y H + E L F + + R + I + + G
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQG 145
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
T +G + LSGG+R+ ++ A L+ P LL+ D T+ LD+ + ++ R++ E
Sbjct: 146 YDTEVGETGNQ----LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
Query: 175 LTSQRKKTVLCTIHQ 189
+TVL Q
Sbjct: 202 SPEWASRTVLLITQQ 216
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 45/248 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--CGFMYQHDL 70
G L+A+ G++GAGK++LL + L +P EGK + + F Q
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGEL--------------EPSEGKIKHSGRISFCSQFSW 109
Query: 71 FSPSLTVYEHLYFMALLKLDRR--VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
P T+ E++ ++ + R +KA Q I+ + +G IT
Sbjct: 110 IMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISK------FAEKDNIVLGEGGIT--- 159
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LS G++ ++S A + D L L D P LD + ++ K +L T
Sbjct: 160 -LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT-- 216
Query: 189 QPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTN 248
E + DKI++L + + F G+ F E Q DF K + +
Sbjct: 217 -SKMEHLKKADKILILHEGSSYFYGT------FSELQNL-------QPDFSSKLMGCDSF 262
Query: 249 DELSSRRR 256
D+ S+ RR
Sbjct: 263 DQFSAERR 270
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G V ++G +G+GKSTLL+A + L +G+I+++G + ++R A G + Q
Sbjct: 47 GQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITLEQWRKAFGVIPQ- 101
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS---IT 125
+ F + + A I + E+GL + G +
Sbjct: 102 ----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
VLS G ++ + A +L+ +LL DEP+ LD + + R +++
Sbjct: 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ 200
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 13/183 (7%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----- 57
L G ++S G + I+G +G+GKSTL+ ++ L D +G + K + K
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 58 FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKA--YQRIALINSLLIELGLMNSQ 115
+ +Q +TV E+L + + + + Y++ ++E +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
++ + LSGG+ K + L+T+P +++ DEP G+ A + + EL
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 176 TSQ 178
++
Sbjct: 200 KAK 202
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 20/142 (14%)
Query: 106 LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL---TDPALLLCDEPTTGLDS 162
L+++GL + R+G + T LSGGE +R+ A+EL T + + DEPTTGL
Sbjct: 847 LVDVGL---GYVRLGQPAPT----LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHF 899
Query: 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222
KL+ ++ L + TV+ H + ++I D II L A G+ +
Sbjct: 900 DDIRKLLNVINGLVD-KGNTVIVIEH--NLDVIKTSDWIIDLGPEGGAGGGT-------V 949
Query: 223 ESQGYPCPYGYNPADFLIKSLA 244
+QG P PA + K LA
Sbjct: 950 VAQGTPEDVAAVPASYTGKFLA 971
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 130 LSGGERKRLSFATELLTD--PALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGGE +R+ AT++ + L + DEP+ GL +LI + L
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRL 569
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
Query: 17 AIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL-FSPSL 75
I G +G GKSTL+ A++ +V+G P + + R+ +HD+ + S
Sbjct: 465 GICGPNGCGKSTLMRAIANG-----------QVDGFPTQEECRTV---YVEHDIDGTHSD 510
Query: 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 135
T F + + +K LIE G + S+ LSGG +
Sbjct: 511 TSVLDFVFESGVGTKEAIK---------DKLIEFGFTDEMIAMPISA-------LSGGWK 554
Query: 136 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
+L+ A +L + +LL DEPT LD+ + + L+ +
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN 592
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGG++ +L A P L++ DEPT LD S L + ++E
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 13/183 (7%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----- 57
L G ++S G + I+G +G+GKSTL+ ++ L D +G + K + K
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 58 FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKA--YQRIALINSLLIELGLMNSQ 115
+ +Q +TV E+L + + + + Y++ ++E +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
++ + LSGG+ K + L+T+P +++ DEP G+ A + + EL
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 176 TSQ 178
++
Sbjct: 200 KAK 202
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 36.6 bits (83), Expect = 0.016, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 35/172 (20%)
Query: 2 TELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA 61
T+L L A G I G +G GKSTL A++ +V+G P + + R+
Sbjct: 454 TQLRLKRARRYG----ICGPNGCGKSTLXRAIANG-----------QVDGFPTQEECRTV 498
Query: 62 CGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
+HD+ + S T F + + +K LIE G +
Sbjct: 499 ---YVEHDIDGTHSDTSVLDFVFESGVGTKEAIK---------DKLIEFGFTDEXIAXPI 546
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 172
S+ LSGG + +L+ A +L + +LL DEPT LD+ + + L+ +
Sbjct: 547 SA-------LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Score = 34.3 bits (77), Expect = 0.077, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGG++ +L A P L++ DEPT LD S L + ++E
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 36.6 bits (83), Expect = 0.018, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 35/172 (20%)
Query: 2 TELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA 61
T+L L A G I G +G GKSTL A++ +V+G P + + R+
Sbjct: 448 TQLRLKRARRYG----ICGPNGCGKSTLXRAIANG-----------QVDGFPTQEECRTV 492
Query: 62 CGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
+HD+ + S T F + + +K LIE G +
Sbjct: 493 ---YVEHDIDGTHSDTSVLDFVFESGVGTKEAIK---------DKLIEFGFTDEXIAXPI 540
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 172
S+ LSGG + +L+ A +L + +LL DEPT LD+ + + L+ +
Sbjct: 541 SA-------LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 585
Score = 34.3 bits (77), Expect = 0.082, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGG++ +L A P L++ DEPT LD S L + ++E
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 941
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 79/183 (43%), Gaps = 13/183 (7%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----- 57
L G ++S G + I+G +G+GKSTL+ ++ L D +G + K + K
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 58 FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKA--YQRIALINSLLIELGLMNSQ 115
+ +Q +TV E+L + + + + Y++ ++E +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
++ + LSGG+ K + L+T+P +++ D+P G+ A + + EL
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLEL 199
Query: 176 TSQ 178
++
Sbjct: 200 KAK 202
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 33/198 (16%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
LT G + A++G +G+GKST+ AAL Q L G + ++G+P+
Sbjct: 38 LTFTLYPGKVTALVGPNGSGKSTV-AALLQNLYQPT--GGKVLLDGEPL---------VQ 85
Query: 66 YQHDLFSPSLTVY--EHLYFMALLKLDRRVKAY-----QRIALINSLLIELG-------L 111
Y H + E L F + R AY + I ++ +E G
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFG---RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGF 142
Query: 112 MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM 171
T +G + L+ G+R+ ++ A L+ P LL+ D T+ LD+ + ++ R+
Sbjct: 143 PQGYDTEVGETGNQ----LAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL 198
Query: 172 MRELTSQRKKTVLCTIHQ 189
+ E +TVL Q
Sbjct: 199 LYESPEWASRTVLLITQQ 216
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA 141
+F ++ K+ R+++ L ++GL + ++G + T LSGGE +R+ A
Sbjct: 815 FFASIPKIKRKLET----------LYDVGL---GYXKLGQPATT----LSGGEAQRVKLA 857
Query: 142 TELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198
EL L + DEPTTGL ++L+ ++ L TVL H + ++I
Sbjct: 858 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEH--NLDVIKTA 914
Query: 199 DKIILLA 205
D II L
Sbjct: 915 DYIIDLG 921
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRL 37
GT VA+ G SG+GKSTL+ AL+Q+L
Sbjct: 650 GTFVAVTGVSGSGKSTLVNEVLYKALAQKL 679
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 130 LSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMR 173
LSGGE +R+ AT++ LT L + DEP+ GL +LI ++
Sbjct: 505 LSGGEAQRIRLATQIGSRLTG-VLYVLDEPSIGLHQRDNDRLIATLK 550
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 24/135 (17%)
Query: 75 LTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 133
+TV + L +F ++ K+ R+++ L ++GL + ++G + T LSGG
Sbjct: 505 MTVEDALDFFASIPKIKRKLET----------LYDVGL---GYMKLGQPATT----LSGG 547
Query: 134 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
E +R+ A EL L + DEPTTGL ++L+ ++ L TVL H
Sbjct: 548 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEH-- 604
Query: 191 SSELIDMFDKIILLA 205
+ ++I D II L
Sbjct: 605 NLDVIKTADYIIDLG 619
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 59/216 (27%)
Query: 13 GTLVAIMGASGAGKSTL----------------LAALSQRL------PDDCIIDG---DI 47
G LV + G SG+GKS+L L+A +++ PD I+G I
Sbjct: 44 GKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAI 103
Query: 48 RVNGKPVEGKFRSACG-----FMYQHDLFS--------------PSLTVYEHLYFMALLK 88
++ K RS G + Y LF+ +++V E L F L+
Sbjct: 104 SIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLE 163
Query: 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT---QKVVLSGGERKRLSFATEL- 144
L + R+ ++ + LG + + +G +T LSGGE +R+ AT++
Sbjct: 164 LTEKEAQIARL-ILREIRDRLGFLQN----VGLDYLTLSRSAGTLSGGEAQRIRLATQIG 218
Query: 145 --LTDPALLLCDEPTTGLDSFSASKLI---RMMREL 175
LT L + DEP+ GL +LI + MR+L
Sbjct: 219 SRLTG-VLYVLDEPSIGLHQRDNDRLIATLKSMRDL 253
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRL 37
GT VA+ G SG+GKSTL+ AL+Q+L
Sbjct: 348 GTFVAVTGVSGSGKSTLVNEVLYKALAQKL 377
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 130 LSGGERKRLSFATELLTD---PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGGE +R+ ATEL + + DEPTTGL +L R + +L TV+
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAV 789
Query: 187 IHQ 189
H+
Sbjct: 790 EHK 792
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 24/135 (17%)
Query: 75 LTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 133
+TV + L +F ++ K+ R+++ L ++GL + ++G + T LSGG
Sbjct: 807 MTVEDALDFFASIPKIKRKLET----------LYDVGL---GYMKLGQPATT----LSGG 849
Query: 134 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
E +R+ A EL L + DEPTTGL ++L+ ++ L TVL H
Sbjct: 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEH-- 906
Query: 191 SSELIDMFDKIILLA 205
+ ++I D II L
Sbjct: 907 NLDVIKTADYIIDLG 921
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRL 37
GT VA+ G SG+GKSTL+ AL+Q+L
Sbjct: 650 GTFVAVTGVSGSGKSTLVNEVLYKALAQKL 679
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT---QKVVL 130
+++V E L F L+L + R+ ++ + LG + + +G +T L
Sbjct: 451 AMSVTEALAFFDGLELTEKEAQIARL-ILREIRDRLGFLQN----VGLDYLTLSRSAGTL 505
Query: 131 SGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLI---RMMREL 175
SGGE +R+ AT++ LT L + DEP+ GL +LI + MR+L
Sbjct: 506 SGGEAQRIRLATQIGSRLTG-VLYVLDEPSIGLHQRDNDRLIATLKSMRDL 555
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 130 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGER RL+ + L + +LL+ DEPT LD KLI +M + + +
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 184 LCTIHQPSSELIDMFDKIILLA 205
L + EL D D +I ++
Sbjct: 309 LVS---HDEELKDAADHVIRIS 327
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 130 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGER RL+ + L + +LL+ DEPT LD KLI +M + + +
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 328
Query: 184 LCTIHQPSSELIDMFDKIILLA 205
L + EL D D +I ++
Sbjct: 329 LVS---HDEELKDAADHVIRIS 347
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 130 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGER RL+ + L + +LL+ DEPT LD KLI +M + + +
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 184 LCTIHQPSSELIDMFDKII 202
L + + EL D D +I
Sbjct: 118 LVSHDE---ELKDAADHVI 133
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 130 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGER RL+ + L + +LL+ DEPT LD KLI +M + + +
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 143
Query: 184 LCTIHQPSSELIDMFDKII 202
L + H EL D D +I
Sbjct: 144 LVS-H--DEELKDAADHVI 159
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 130 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGER RL+ + L + +LL+ DEPT LD KLI +M + + +
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 148
Query: 184 LCTIHQPSSELIDMFDKIILLA 205
L + H EL D D +I ++
Sbjct: 149 LVS-H--DEELKDAADHVIRIS 167
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From
E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From
E.Coli
Length = 219
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG---KPVEGKFRSACGFMYQHD 69
GTL + SGAGKS+L+ AL + P + D + V+ +P G+ F HD
Sbjct: 16 GTLYIVSAPSGAGKSSLIQALLKTQP---LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD 72
Query: 70 LFSPSLT 76
F ++
Sbjct: 73 EFKEXIS 79
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 130 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
L GGER RL+ + L + +LL+ DEPT LD KLI +M + + +
Sbjct: 54 LRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 113
Query: 184 LCTIHQPSSELIDMFDKII 202
L + H EL D D +I
Sbjct: 114 LVS-H--DEELKDAADHVI 129
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGGE +R++ L + L DEP+ LDS +++R KKT H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD 527
Query: 190 PSSELIDMFDKIILLADSRTAFIG--SKDAALAFLESQGYPCPYGYNPADFLIKSLAVT- 246
F LAD F G SK+A ES C + +K+L VT
Sbjct: 528 --------FIMATYLADKVIVFEGIPSKNAHARAPESLLTGC-------NRFLKNLNVTF 572
Query: 247 TNDELSSRRRLKRI 260
D S R R+ ++
Sbjct: 573 RRDPNSFRPRINKL 586
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCT 186
LSGGE +R + + + + + DEP++ LD +A+++IR + T K V+C
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT----KYVICV 277
Query: 187 IH 188
H
Sbjct: 278 EH 279
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase
In Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase
In Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase
In Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric
E.Coli Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric
E.Coli Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric
E.Coli Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric
E.Coli Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric
E.Coli Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric
E.Coli Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG---KPVEGKFRSACGFMYQH 68
GTL + SGAGKS+L+ AL + P + D + V+ +P G+ F H
Sbjct: 3 QGTLYIVSAPSGAGKSSLIQALLKTQP---LYDTQVSVSHTTRQPRPGEVHGEHYFFVNH 59
Query: 69 DLF 71
D F
Sbjct: 60 DEF 62
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPD---DCI--IDGDIRVNGKPVEGKFRSACGFMY 66
G V G SGAGKSTL AL+ RL + C+ +DGDI V S GF
Sbjct: 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI------VRRHLSSELGFSK 421
Query: 67 QH 68
H
Sbjct: 422 AH 423
>pdb|2JAS|A Chain A, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|B Chain B, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|C Chain C, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|D Chain D, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|E Chain E, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|F Chain F, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
Length = 206
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+AI G GAGKST+ A +S++L
Sbjct: 4 IAIFGTVGAGKSTISAEISKKL 25
>pdb|2JAQ|A Chain A, Structure Of Deoxyadenosine Kinase From M. Mycoides With
Bound Dctp
pdb|2JAQ|B Chain B, Structure Of Deoxyadenosine Kinase From M. Mycoides With
Bound Dctp
pdb|2JAT|A Chain A, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Products Dcmp And A Flexible Dcdp Bound
pdb|2JAT|B Chain B, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Products Dcmp And A Flexible Dcdp Bound
Length = 205
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+AI G GAGKST+ A +S++L
Sbjct: 3 IAIFGTVGAGKSTISAEISKKL 24
>pdb|2POS|A Chain A, Crystal Structure Of Sylvaticin, A New Secreted Protein
From Pythium Sylvaticum
pdb|2POS|B Chain B, Crystal Structure Of Sylvaticin, A New Secreted Protein
From Pythium Sylvaticum
pdb|2POS|C Chain C, Crystal Structure Of Sylvaticin, A New Secreted Protein
From Pythium Sylvaticum
pdb|2POS|D Chain D, Crystal Structure Of Sylvaticin, A New Secreted Protein
From Pythium Sylvaticum
pdb|2PR0|A Chain A, Crystal Structure Of Sylvaticin, A New Secreted Protein
From Pythium Sylvaticum
pdb|2PR0|B Chain B, Crystal Structure Of Sylvaticin, A New Secreted Protein
From Pythium Sylvaticum
Length = 94
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 28 TLLAALSQRLPDDCI-IDGDIRVNGKPVEGKFRSAC 62
TL+ A+ P+DCI + GD+R+N K + +F +C
Sbjct: 58 TLIDAIKALNPNDCILVFGDVRLNVKKLVTEFEPSC 93
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD 40
++ + G +G+GK+TL+ AL Q +P D
Sbjct: 177 VIVVAGETGSGKTTLMKALMQEIPFD 202
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And
Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And
Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And
Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD---C-IIDGD 46
G ++ + G SG+GKSTL AL+Q L C I+DGD
Sbjct: 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPD 39
L+ +MG G GK+T+ AA++ RL D
Sbjct: 329 LIMLMGKGGVGKTTMAAAIAVRLAD 353
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
L I G +G GKST L+ +L + I+GDI
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI 36
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPD 39
+ I G SG GKSTLL L PD
Sbjct: 20 IVISGPSGTGKSTLLKKLFAEYPD 43
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate
Kinase And Its Substrate Gmp At 2.0 Angstroms
Resolution
Length = 187
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPD 39
+ I G SG GKSTLL L PD
Sbjct: 5 IVISGPSGTGKSTLLKKLFAEYPD 28
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPD 39
+ I G SG GKSTLL L PD
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPD 27
>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
Length = 198
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCI----IDGD 46
T G V + G SGAGK+T+ AL + L I +DGD
Sbjct: 16 TRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGD 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,968,245
Number of Sequences: 62578
Number of extensions: 302862
Number of successful extensions: 1378
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 179
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)