Query psy2520
Match_columns 290
No_of_seqs 269 out of 2993
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 18:18:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.2E-58 2.5E-63 396.4 21.4 201 4-219 19-224 (240)
2 KOG0061|consensus 100.0 1E-55 2.2E-60 439.8 28.3 258 4-265 47-306 (613)
3 COG1135 AbcC ABC-type metal io 100.0 4.4E-56 9.5E-61 398.0 20.8 201 4-219 23-230 (339)
4 COG1125 OpuBA ABC-type proline 100.0 3.4E-55 7.4E-60 382.7 21.4 201 4-219 18-224 (309)
5 TIGR00955 3a01204 The Eye Pigm 100.0 7.2E-54 1.6E-58 428.6 31.4 271 4-277 42-313 (617)
6 COG1116 TauB ABC-type nitrate/ 100.0 3.2E-54 7E-59 377.8 21.0 188 4-207 20-207 (248)
7 COG1136 SalX ABC-type antimicr 100.0 9.3E-54 2E-58 373.8 23.2 190 4-209 22-220 (226)
8 COG1120 FepC ABC-type cobalami 100.0 2.7E-54 5.8E-59 384.0 18.3 215 4-230 19-241 (258)
9 COG3839 MalK ABC-type sugar tr 100.0 9.8E-54 2.1E-58 393.7 21.8 202 4-220 20-223 (338)
10 COG1127 Ttg2A ABC-type transpo 100.0 1.7E-53 3.6E-58 369.8 20.9 203 4-220 25-235 (263)
11 COG1131 CcmA ABC-type multidru 100.0 6.2E-53 1.3E-57 386.4 25.5 204 4-222 22-228 (293)
12 PLN03211 ABC transporter G-25; 100.0 1.8E-52 3.9E-57 420.0 30.5 237 4-245 85-321 (659)
13 COG3842 PotA ABC-type spermidi 100.0 1.3E-53 2.7E-58 394.9 19.9 202 4-219 22-225 (352)
14 COG1118 CysA ABC-type sulfate/ 100.0 4.2E-53 9.1E-58 378.2 20.3 203 4-219 19-226 (345)
15 COG3638 ABC-type phosphate/pho 100.0 6.1E-53 1.3E-57 365.3 18.2 204 4-220 21-237 (258)
16 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9.2E-52 2E-56 366.2 21.5 201 4-220 21-227 (254)
17 COG1117 PstB ABC-type phosphat 100.0 3.6E-52 7.8E-57 355.5 17.1 205 4-219 24-236 (253)
18 COG4555 NatA ABC-type Na+ tran 100.0 9E-52 2E-56 350.1 18.3 200 4-219 19-221 (245)
19 PRK11650 ugpC glycerol-3-phosp 100.0 7.3E-51 1.6E-55 382.0 25.2 201 4-219 21-223 (356)
20 COG1122 CbiO ABC-type cobalt t 100.0 3.7E-51 8.1E-56 362.2 21.8 202 4-220 21-228 (235)
21 TIGR02314 ABC_MetN D-methionin 100.0 1.3E-50 2.8E-55 378.1 25.9 201 4-219 22-229 (343)
22 PRK13537 nodulation ABC transp 100.0 1.9E-50 4.2E-55 372.3 25.3 201 4-220 24-227 (306)
23 COG3840 ThiQ ABC-type thiamine 100.0 3.5E-51 7.5E-56 341.7 18.3 200 5-219 17-218 (231)
24 TIGR03265 PhnT2 putative 2-ami 100.0 1.9E-50 4.1E-55 378.8 25.4 202 4-220 21-224 (353)
25 PRK11432 fbpC ferric transport 100.0 2.5E-50 5.4E-55 377.6 25.6 201 4-219 23-225 (351)
26 COG2884 FtsE Predicted ATPase 100.0 1.2E-50 2.7E-55 340.4 20.5 195 4-214 19-220 (223)
27 TIGR01186 proV glycine betaine 100.0 3.6E-50 7.9E-55 377.3 25.7 201 4-219 10-218 (363)
28 cd03261 ABC_Org_Solvent_Resist 100.0 4.8E-50 1E-54 356.0 24.5 202 4-219 17-225 (235)
29 COG1124 DppF ABC-type dipeptid 100.0 1.6E-50 3.4E-55 352.2 20.1 199 4-219 24-230 (252)
30 TIGR01188 drrA daunorubicin re 100.0 5.5E-50 1.2E-54 368.7 24.9 201 4-220 10-213 (302)
31 TIGR03258 PhnT 2-aminoethylpho 100.0 6.4E-50 1.4E-54 376.0 25.5 201 4-219 22-227 (362)
32 PRK10851 sulfate/thiosulfate t 100.0 8.2E-50 1.8E-54 374.5 25.6 204 4-219 19-225 (353)
33 TIGR00956 3a01205 Pleiotropic 100.0 9.6E-50 2.1E-54 426.9 29.6 272 4-278 78-363 (1394)
34 PRK09452 potA putrescine/sperm 100.0 9.6E-50 2.1E-54 376.3 25.5 201 4-219 31-233 (375)
35 PLN03140 ABC transporter G fam 100.0 9.4E-50 2E-54 426.6 27.5 272 4-278 182-492 (1470)
36 TIGR00956 3a01205 Pleiotropic 100.0 3.6E-49 7.8E-54 422.5 31.1 261 4-274 780-1047(1394)
37 PRK13536 nodulation factor exp 100.0 2.5E-49 5.4E-54 369.5 26.0 201 4-220 58-261 (340)
38 PRK11607 potG putrescine trans 100.0 2.3E-49 4.9E-54 374.1 25.9 201 4-219 36-238 (377)
39 COG1137 YhbG ABC-type (unclass 100.0 7.4E-51 1.6E-55 344.2 13.2 203 4-220 21-228 (243)
40 cd03259 ABC_Carb_Solutes_like 100.0 3.4E-49 7.4E-54 345.5 23.6 195 4-213 17-213 (213)
41 PRK11000 maltose/maltodextrin 100.0 4E-49 8.6E-54 372.0 25.6 201 4-219 20-222 (369)
42 COG4175 ProV ABC-type proline/ 100.0 5.6E-50 1.2E-54 358.9 18.7 201 4-219 45-253 (386)
43 PRK13637 cbiO cobalt transport 100.0 2.2E-48 4.8E-53 355.6 29.0 213 4-231 24-248 (287)
44 cd03265 ABC_DrrA DrrA is the A 100.0 6.1E-49 1.3E-53 345.7 24.1 199 4-217 17-218 (220)
45 COG0411 LivG ABC-type branched 100.0 9.6E-50 2.1E-54 347.5 18.5 204 4-219 21-238 (250)
46 PRK11153 metN DL-methionine tr 100.0 7.4E-49 1.6E-53 367.0 25.6 201 4-219 22-229 (343)
47 cd03296 ABC_CysA_sulfate_impor 100.0 9.6E-49 2.1E-53 348.7 25.0 204 4-219 19-225 (239)
48 TIGR01288 nodI ATP-binding ABC 100.0 9.4E-49 2E-53 360.7 25.5 201 4-220 21-224 (303)
49 cd03219 ABC_Mj1267_LivG_branch 100.0 1.1E-48 2.4E-53 347.2 24.4 203 4-219 17-231 (236)
50 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.4E-48 3E-53 343.4 24.6 196 4-215 21-218 (220)
51 PLN03140 ABC transporter G fam 100.0 1.9E-48 4.1E-53 416.6 29.7 264 4-277 897-1168(1470)
52 TIGR00960 3a0501s02 Type II (G 100.0 6.6E-49 1.4E-53 344.4 21.6 190 4-209 20-216 (216)
53 cd03258 ABC_MetN_methionine_tr 100.0 1.9E-48 4E-53 345.3 24.4 200 4-218 22-228 (233)
54 PRK13650 cbiO cobalt transport 100.0 3.7E-48 8E-53 352.8 27.0 212 4-231 24-243 (279)
55 PRK13643 cbiO cobalt transport 100.0 2.4E-48 5.1E-53 355.6 25.6 219 4-239 23-255 (288)
56 cd03256 ABC_PhnC_transporter A 100.0 1.2E-48 2.7E-53 347.7 23.1 203 4-218 18-232 (241)
57 PRK13634 cbiO cobalt transport 100.0 6E-48 1.3E-52 353.3 28.1 212 4-231 24-249 (290)
58 cd03218 ABC_YhbG The ABC trans 100.0 3.1E-48 6.7E-53 343.5 24.5 200 4-219 17-221 (232)
59 cd03301 ABC_MalK_N The N-termi 100.0 2.7E-48 5.8E-53 339.7 23.8 195 4-213 17-213 (213)
60 TIGR03522 GldA_ABC_ATP gliding 100.0 3.2E-48 6.9E-53 356.8 25.2 200 4-220 19-221 (301)
61 PRK15079 oligopeptide ABC tran 100.0 3.7E-48 7.9E-53 360.5 25.2 203 4-219 38-250 (331)
62 PRK10070 glycine betaine trans 100.0 4.7E-48 1E-52 367.0 26.1 201 4-219 45-253 (400)
63 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.7E-48 1.2E-52 349.8 25.5 201 4-219 41-249 (269)
64 cd03263 ABC_subfamily_A The AB 100.0 4.2E-48 9.1E-53 340.0 23.8 198 4-218 19-219 (220)
65 PRK13651 cobalt transporter AT 100.0 3.9E-48 8.5E-53 356.7 24.6 213 4-232 24-269 (305)
66 cd03266 ABC_NatA_sodium_export 100.0 2.9E-48 6.3E-53 340.6 22.7 194 4-213 22-218 (218)
67 TIGR02315 ABC_phnC phosphonate 100.0 2.1E-48 4.5E-53 346.8 21.9 203 4-218 19-233 (243)
68 cd03269 ABC_putative_ATPase Th 100.0 2.9E-48 6.2E-53 338.9 22.1 194 4-213 17-210 (210)
69 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6.5E-48 1.4E-52 343.9 24.5 200 4-218 18-223 (242)
70 PRK13646 cbiO cobalt transport 100.0 1E-47 2.2E-52 351.1 25.9 211 4-230 24-248 (286)
71 PRK11831 putative ABC transpor 100.0 8.2E-48 1.8E-52 348.7 24.9 202 4-219 24-232 (269)
72 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.6E-48 7.9E-53 340.0 21.8 190 4-209 21-218 (218)
73 cd03224 ABC_TM1139_LivF_branch 100.0 5.5E-48 1.2E-52 339.5 22.8 198 4-219 17-220 (222)
74 PRK11264 putative amino-acid A 100.0 9.6E-48 2.1E-52 344.1 24.7 201 4-219 20-232 (250)
75 cd03298 ABC_ThiQ_thiamine_tran 100.0 5.7E-48 1.2E-52 337.3 22.6 194 5-213 16-211 (211)
76 PRK13647 cbiO cobalt transport 100.0 1.3E-47 2.8E-52 348.5 25.7 211 4-230 22-239 (274)
77 TIGR02142 modC_ABC molybdenum 100.0 9E-48 2E-52 361.2 25.3 198 5-219 15-220 (354)
78 TIGR03415 ABC_choXWV_ATP choli 100.0 1E-47 2.2E-52 362.5 25.6 201 4-219 41-253 (382)
79 PRK09493 glnQ glutamine ABC tr 100.0 1.1E-47 2.3E-52 342.0 24.3 201 4-219 18-224 (240)
80 cd03260 ABC_PstB_phosphate_tra 100.0 5.1E-48 1.1E-52 341.2 22.0 199 4-217 17-226 (227)
81 PRK09536 btuD corrinoid ABC tr 100.0 6.3E-48 1.4E-52 366.3 24.1 203 4-219 20-227 (402)
82 PRK11144 modC molybdate transp 100.0 1.1E-47 2.4E-52 360.3 24.9 195 5-220 16-218 (352)
83 PRK13631 cbiO cobalt transport 100.0 1.6E-47 3.6E-52 354.7 25.4 212 4-232 43-280 (320)
84 cd03226 ABC_cobalt_CbiO_domain 100.0 7.8E-48 1.7E-52 335.2 21.6 187 4-210 17-205 (205)
85 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.3E-47 5.1E-52 339.1 25.1 200 4-219 18-220 (236)
86 COG0410 LivF ABC-type branched 100.0 6.8E-48 1.5E-52 333.5 20.7 200 4-219 20-225 (237)
87 cd03268 ABC_BcrA_bacitracin_re 100.0 8.5E-48 1.8E-52 335.5 21.4 190 4-213 17-208 (208)
88 TIGR01184 ntrCD nitrate transp 100.0 1.5E-47 3.2E-52 339.5 23.2 199 4-216 2-200 (230)
89 TIGR02673 FtsE cell division A 100.0 1.4E-47 3E-52 335.4 22.4 189 4-208 19-214 (214)
90 COG4152 ABC-type uncharacteriz 100.0 3.4E-48 7.4E-53 336.8 18.2 202 4-221 19-220 (300)
91 PRK11629 lolD lipoprotein tran 100.0 3.4E-47 7.3E-52 337.5 24.8 195 4-214 26-228 (233)
92 cd03292 ABC_FtsE_transporter F 100.0 1.7E-47 3.6E-52 334.7 22.4 190 4-209 18-214 (214)
93 PRK13635 cbiO cobalt transport 100.0 6.6E-47 1.4E-51 344.6 27.1 201 4-220 24-229 (279)
94 PRK11308 dppF dipeptide transp 100.0 3.5E-47 7.6E-52 353.5 25.6 202 4-219 32-243 (327)
95 PRK10771 thiQ thiamine transpo 100.0 2.8E-47 6.2E-52 337.8 23.6 200 5-219 17-218 (232)
96 TIGR00972 3a0107s01c2 phosphat 100.0 4.7E-47 1E-51 339.4 25.1 202 4-219 18-231 (247)
97 PRK13641 cbiO cobalt transport 100.0 3.8E-47 8.3E-52 347.5 25.1 199 4-219 24-233 (287)
98 PRK11300 livG leucine/isoleuci 100.0 3.7E-47 7.9E-52 341.3 24.2 204 4-219 22-242 (255)
99 PRK13652 cbiO cobalt transport 100.0 1.3E-46 2.9E-51 342.2 28.0 202 4-220 21-227 (277)
100 PRK11022 dppD dipeptide transp 100.0 7.1E-47 1.5E-51 351.3 26.6 205 4-219 24-242 (326)
101 PRK09473 oppD oligopeptide tra 100.0 6.9E-47 1.5E-51 351.9 26.5 205 4-219 33-250 (330)
102 cd03234 ABCG_White The White s 100.0 5.5E-47 1.2E-51 334.7 24.5 198 4-213 24-226 (226)
103 cd03257 ABC_NikE_OppD_transpor 100.0 4.5E-47 9.7E-52 334.8 23.8 197 4-213 22-228 (228)
104 PRK10895 lipopolysaccharide AB 100.0 3.8E-47 8.2E-52 338.7 23.4 201 4-219 20-225 (241)
105 PRK13636 cbiO cobalt transport 100.0 6.1E-47 1.3E-51 345.5 25.2 213 4-231 23-245 (283)
106 TIGR03005 ectoine_ehuA ectoine 100.0 5.9E-47 1.3E-51 339.7 24.7 202 4-219 17-235 (252)
107 PRK10619 histidine/lysine/argi 100.0 7.7E-47 1.7E-51 340.0 25.3 200 4-219 22-240 (257)
108 TIGR01277 thiQ thiamine ABC tr 100.0 6.6E-47 1.4E-51 331.3 24.1 196 4-214 15-212 (213)
109 PRK11248 tauB taurine transpor 100.0 6.2E-47 1.4E-51 340.6 24.4 197 4-216 18-216 (255)
110 cd03264 ABC_drug_resistance_li 100.0 3.1E-47 6.8E-52 332.6 21.8 192 4-213 17-211 (211)
111 TIGR02211 LolD_lipo_ex lipopro 100.0 5.5E-47 1.2E-51 333.1 23.2 191 4-210 22-220 (221)
112 TIGR02770 nickel_nikD nickel i 100.0 9.4E-47 2E-51 334.1 24.8 204 4-219 3-214 (230)
113 COG0444 DppD ABC-type dipeptid 100.0 4.3E-47 9.3E-52 343.4 22.9 206 4-219 22-242 (316)
114 PRK10908 cell division protein 100.0 5.8E-47 1.3E-51 333.5 23.1 192 4-211 19-217 (222)
115 cd03225 ABC_cobalt_CbiO_domain 100.0 4.2E-47 9.2E-52 331.6 21.9 189 4-208 18-211 (211)
116 PRK13548 hmuV hemin importer A 100.0 8.4E-47 1.8E-51 340.2 24.3 201 4-219 19-229 (258)
117 PRK11124 artP arginine transpo 100.0 8.4E-47 1.8E-51 336.7 23.9 199 4-218 19-228 (242)
118 PRK13639 cbiO cobalt transport 100.0 2.6E-46 5.6E-51 340.0 27.5 211 4-230 19-239 (275)
119 PRK11614 livF leucine/isoleuci 100.0 5.4E-47 1.2E-51 336.9 22.6 198 4-219 22-225 (237)
120 PRK13644 cbiO cobalt transport 100.0 1.9E-46 4.2E-51 340.7 26.6 200 4-220 19-224 (274)
121 cd03262 ABC_HisP_GlnQ_permease 100.0 5.7E-47 1.2E-51 331.1 22.2 191 4-209 17-213 (213)
122 TIGR02769 nickel_nikE nickel i 100.0 1.1E-46 2.3E-51 340.6 24.6 202 4-219 28-239 (265)
123 cd03297 ABC_ModC_molybdenum_tr 100.0 9.7E-47 2.1E-51 330.3 23.5 191 5-213 16-214 (214)
124 TIGR03411 urea_trans_UrtD urea 100.0 1.3E-46 2.8E-51 335.3 24.7 202 4-219 19-230 (242)
125 cd03235 ABC_Metallic_Cations A 100.0 3.2E-47 7E-52 333.0 20.1 195 4-213 16-213 (213)
126 PRK11247 ssuB aliphatic sulfon 100.0 6.8E-47 1.5E-51 340.7 22.7 191 4-216 29-219 (257)
127 PRK13638 cbiO cobalt transport 100.0 1.6E-46 3.4E-51 340.6 25.1 200 4-219 18-224 (271)
128 KOG0065|consensus 100.0 5.2E-48 1.1E-52 395.6 17.1 264 4-278 808-1079(1391)
129 TIGR03410 urea_trans_UrtE urea 100.0 1.1E-46 2.3E-51 333.4 23.1 197 4-218 17-219 (230)
130 PRK13648 cbiO cobalt transport 100.0 2E-46 4.4E-51 339.5 25.4 200 4-219 26-230 (269)
131 PRK10575 iron-hydroxamate tran 100.0 8.1E-47 1.7E-51 341.5 22.5 204 4-219 28-236 (265)
132 PRK09984 phosphonate/organopho 100.0 1.1E-46 2.4E-51 339.8 23.3 206 4-218 21-240 (262)
133 PRK13640 cbiO cobalt transport 100.0 2E-46 4.3E-51 341.9 25.2 204 4-220 24-232 (282)
134 PRK14247 phosphate ABC transpo 100.0 2.2E-46 4.7E-51 335.5 24.9 204 4-219 20-233 (250)
135 PRK15093 antimicrobial peptide 100.0 2E-46 4.4E-51 349.0 25.4 207 4-219 24-247 (330)
136 PRK10253 iron-enterobactin tra 100.0 9.9E-47 2.1E-51 340.9 22.7 204 4-219 24-232 (265)
137 PRK13633 cobalt transporter AT 100.0 4.2E-46 9.2E-51 339.4 26.4 201 4-220 27-233 (280)
138 PRK13649 cbiO cobalt transport 100.0 2.2E-46 4.8E-51 341.1 24.6 200 4-220 24-234 (280)
139 PRK14250 phosphate ABC transpo 100.0 1.8E-46 3.9E-51 334.7 23.2 196 4-219 20-220 (241)
140 TIGR03740 galliderm_ABC gallid 100.0 2.3E-46 5E-51 329.9 23.5 193 4-216 17-209 (223)
141 PRK14268 phosphate ABC transpo 100.0 3.2E-46 6.9E-51 336.2 24.8 201 4-219 29-241 (258)
142 PRK13632 cbiO cobalt transport 100.0 3.1E-46 6.8E-51 338.7 24.9 200 4-219 26-230 (271)
143 PRK10584 putative ABC transpor 100.0 2.6E-46 5.6E-51 330.5 23.7 192 4-211 27-226 (228)
144 cd03299 ABC_ModC_like Archeal 100.0 3.9E-46 8.5E-51 331.3 25.0 201 4-219 16-218 (235)
145 PRK11231 fecE iron-dicitrate t 100.0 1.4E-46 3E-51 337.9 22.2 202 4-219 19-226 (255)
146 TIGR03873 F420-0_ABC_ATP propo 100.0 2E-46 4.3E-51 337.1 23.1 203 4-219 18-225 (256)
147 PRK13642 cbiO cobalt transport 100.0 7.5E-46 1.6E-50 337.3 27.1 201 4-220 24-229 (277)
148 PRK14267 phosphate ABC transpo 100.0 3.4E-46 7.3E-51 334.8 24.4 204 4-219 21-236 (253)
149 PRK14273 phosphate ABC transpo 100.0 3.5E-46 7.7E-51 335.0 24.3 202 4-219 24-237 (254)
150 PRK15112 antimicrobial peptide 100.0 3.3E-46 7.2E-51 337.9 24.2 202 4-219 30-238 (267)
151 PRK13645 cbiO cobalt transport 100.0 3.4E-46 7.3E-51 341.5 24.3 201 4-219 28-239 (289)
152 TIGR01978 sufC FeS assembly AT 100.0 4.7E-46 1E-50 331.5 24.5 202 4-218 17-232 (243)
153 cd03267 ABC_NatA_like Similar 100.0 4.4E-46 9.6E-51 331.3 24.1 195 4-213 38-236 (236)
154 cd03300 ABC_PotA_N PotA is an 100.0 7.4E-46 1.6E-50 328.8 25.4 201 4-219 17-219 (232)
155 PRK14242 phosphate transporter 100.0 6.9E-46 1.5E-50 332.8 25.1 202 4-219 23-236 (253)
156 PRK14269 phosphate ABC transpo 100.0 9.1E-46 2E-50 331.0 25.1 203 4-219 19-229 (246)
157 cd03252 ABCC_Hemolysin The ABC 100.0 5.2E-46 1.1E-50 330.4 21.6 200 4-219 19-224 (237)
158 TIGR00968 3a0106s01 sulfate AB 100.0 1.5E-45 3.2E-50 328.0 24.5 201 4-219 17-219 (237)
159 PRK14274 phosphate ABC transpo 100.0 1.9E-45 4.1E-50 331.3 25.1 202 4-219 29-242 (259)
160 PRK10744 pstB phosphate transp 100.0 1.8E-45 3.9E-50 331.7 24.8 202 4-219 30-243 (260)
161 PRK14235 phosphate transporter 100.0 1.9E-45 4.1E-50 332.9 25.0 203 4-219 36-250 (267)
162 COG4181 Predicted ABC-type tra 100.0 2.6E-46 5.6E-51 309.8 17.6 192 4-211 27-226 (228)
163 PRK14256 phosphate ABC transpo 100.0 2.7E-45 5.8E-50 328.9 25.6 203 4-219 21-235 (252)
164 PRK03695 vitamin B12-transport 100.0 1.2E-45 2.6E-50 330.8 23.4 198 4-219 13-221 (248)
165 PRK14241 phosphate transporter 100.0 2.2E-45 4.8E-50 330.7 25.1 203 4-219 21-241 (258)
166 PRK11701 phnK phosphonate C-P 100.0 2.3E-45 5E-50 330.5 25.0 202 4-219 23-240 (258)
167 PRK14245 phosphate ABC transpo 100.0 2.6E-45 5.6E-50 328.7 25.0 201 4-219 20-233 (250)
168 PRK14239 phosphate transporter 100.0 3E-45 6.5E-50 328.3 25.2 202 4-219 22-235 (252)
169 PRK14244 phosphate ABC transpo 100.0 2.5E-45 5.3E-50 329.0 24.6 203 4-219 22-236 (251)
170 PRK13549 xylose transporter AT 100.0 6.9E-46 1.5E-50 363.5 22.8 204 4-218 22-230 (506)
171 PRK10418 nikD nickel transport 100.0 4.1E-45 8.8E-50 328.3 25.6 202 4-219 20-229 (254)
172 PRK13547 hmuV hemin importer A 100.0 1.3E-45 2.8E-50 335.0 22.5 207 4-219 18-243 (272)
173 cd03251 ABCC_MsbA MsbA is an e 100.0 1.1E-45 2.5E-50 327.5 21.3 200 4-219 19-224 (234)
174 PRK14270 phosphate ABC transpo 100.0 3.6E-45 7.8E-50 327.9 24.8 202 4-219 21-234 (251)
175 PRK14240 phosphate transporter 100.0 4.9E-45 1.1E-49 326.7 25.6 202 4-219 20-233 (250)
176 PRK10261 glutathione transport 100.0 2.4E-45 5.2E-50 367.6 26.0 202 4-219 341-552 (623)
177 TIGR02982 heterocyst_DevA ABC 100.0 2E-45 4.3E-50 323.5 22.2 191 4-209 22-219 (220)
178 PRK14272 phosphate ABC transpo 100.0 5.9E-45 1.3E-49 326.4 25.4 203 4-219 21-235 (252)
179 PRK10762 D-ribose transporter 100.0 1.2E-45 2.7E-50 361.3 22.8 202 4-218 21-228 (501)
180 PRK14262 phosphate ABC transpo 100.0 6E-45 1.3E-49 326.2 25.1 202 4-219 20-233 (250)
181 COG1123 ATPase components of v 100.0 1.6E-45 3.6E-50 354.4 22.5 202 4-219 308-518 (539)
182 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.9E-45 4E-50 327.0 21.2 200 4-219 20-225 (238)
183 COG1123 ATPase components of v 100.0 3.4E-45 7.4E-50 352.2 24.3 206 4-220 26-244 (539)
184 PRK09700 D-allose transporter 100.0 1.9E-45 4.2E-50 360.6 23.0 202 4-218 22-232 (510)
185 COG4525 TauB ABC-type taurine 100.0 3.5E-45 7.7E-50 308.8 21.2 197 4-216 22-220 (259)
186 PRK14248 phosphate ABC transpo 100.0 7.1E-45 1.5E-49 329.2 24.6 202 4-219 38-251 (268)
187 TIGR03608 L_ocin_972_ABC putat 100.0 4.4E-45 9.5E-50 317.6 21.8 184 4-204 15-206 (206)
188 PRK14259 phosphate ABC transpo 100.0 7.3E-45 1.6E-49 329.5 23.9 200 4-219 30-252 (269)
189 PRK14258 phosphate ABC transpo 100.0 1.4E-44 3E-49 326.2 25.5 204 4-219 24-244 (261)
190 PRK10982 galactose/methyl gala 100.0 4.4E-45 9.6E-50 356.6 23.8 202 4-218 15-221 (491)
191 TIGR02323 CP_lyasePhnK phospho 100.0 9.6E-45 2.1E-49 325.4 24.1 202 4-219 20-237 (253)
192 PRK14249 phosphate ABC transpo 100.0 1.5E-44 3.2E-49 323.9 25.2 202 4-219 21-234 (251)
193 PRK15439 autoinducer 2 ABC tra 100.0 4.7E-45 1E-49 357.9 23.8 196 4-219 28-228 (510)
194 PRK14260 phosphate ABC transpo 100.0 1.5E-44 3.4E-49 325.5 25.1 202 4-219 24-242 (259)
195 PRK10419 nikE nickel transport 100.0 1.2E-44 2.6E-49 327.9 24.3 202 4-219 29-240 (268)
196 cd03254 ABCC_Glucan_exporter_l 100.0 4.7E-45 1E-49 322.5 21.2 200 4-219 20-225 (229)
197 PRK14251 phosphate ABC transpo 100.0 1.5E-44 3.3E-49 323.7 24.6 202 4-219 21-234 (251)
198 COG4598 HisP ABC-type histidin 100.0 1E-45 2.2E-50 308.5 15.6 201 4-219 23-240 (256)
199 TIGR01187 potA spermidine/putr 100.0 8E-45 1.7E-49 337.6 23.0 187 18-219 1-189 (325)
200 TIGR03771 anch_rpt_ABC anchore 100.0 7.4E-45 1.6E-49 320.8 21.6 197 8-219 1-200 (223)
201 COG4148 ModC ABC-type molybdat 100.0 6.5E-46 1.4E-50 327.9 14.7 197 3-220 14-218 (352)
202 PRK14237 phosphate transporter 100.0 2.3E-44 5E-49 325.9 25.3 202 4-219 37-250 (267)
203 PRK14253 phosphate ABC transpo 100.0 2.1E-44 4.5E-49 322.5 24.7 201 4-218 20-231 (249)
204 PRK14275 phosphate ABC transpo 100.0 1.9E-44 4.1E-49 329.6 24.8 202 4-219 56-269 (286)
205 PRK14255 phosphate ABC transpo 100.0 3.1E-44 6.8E-49 321.9 25.4 202 4-219 22-235 (252)
206 PRK15134 microcin C ABC transp 100.0 1.2E-44 2.6E-49 356.5 24.5 202 4-219 303-514 (529)
207 PRK14238 phosphate transporter 100.0 2.3E-44 5.1E-49 326.5 24.2 202 4-219 41-254 (271)
208 cd03253 ABCC_ATM1_transporter 100.0 1.1E-44 2.4E-49 321.6 21.5 200 4-219 18-223 (236)
209 PRK14261 phosphate ABC transpo 100.0 3E-44 6.6E-49 322.3 24.6 202 4-219 23-236 (253)
210 PRK14236 phosphate transporter 100.0 3.7E-44 7.9E-49 325.3 25.1 202 4-219 42-255 (272)
211 PRK10261 glutathione transport 100.0 1.2E-44 2.7E-49 362.4 23.7 202 4-219 33-257 (623)
212 PRK14263 phosphate ABC transpo 100.0 4.3E-44 9.2E-49 323.2 24.9 204 4-219 25-244 (261)
213 PRK14257 phosphate ABC transpo 100.0 4.5E-44 9.8E-49 332.8 25.6 206 4-219 99-312 (329)
214 COG2274 SunT ABC-type bacterio 100.0 4.4E-45 9.5E-50 366.3 20.1 203 4-220 490-696 (709)
215 PRK11288 araG L-arabinose tran 100.0 1.8E-44 4E-49 353.0 23.8 199 4-215 21-224 (501)
216 TIGR03269 met_CoM_red_A2 methy 100.0 2.4E-44 5.2E-49 353.6 24.5 201 4-220 301-517 (520)
217 PRK14271 phosphate ABC transpo 100.0 6E-44 1.3E-48 324.7 25.1 202 4-219 38-250 (276)
218 PRK11174 cysteine/glutathione 100.0 1.5E-44 3.2E-49 359.8 23.0 201 4-219 367-571 (588)
219 CHL00131 ycf16 sulfate ABC tra 100.0 6.3E-44 1.4E-48 319.8 24.8 202 4-218 24-239 (252)
220 PRK15134 microcin C ABC transp 100.0 3.4E-44 7.3E-49 353.3 25.2 205 4-219 26-245 (529)
221 TIGR02633 xylG D-xylose ABC tr 100.0 2.2E-44 4.7E-49 352.4 23.6 203 4-217 18-227 (500)
222 PRK10247 putative ABC transpor 100.0 1.8E-44 3.9E-49 318.6 20.4 193 4-215 24-222 (225)
223 cd03233 ABC_PDR_domain1 The pl 100.0 3.8E-44 8.2E-49 311.8 22.1 176 4-213 24-202 (202)
224 PRK14254 phosphate ABC transpo 100.0 7.3E-44 1.6E-48 325.5 24.8 200 4-219 56-268 (285)
225 TIGR03269 met_CoM_red_A2 methy 100.0 4.3E-44 9.4E-49 351.9 24.8 203 4-221 17-259 (520)
226 PRK15056 manganese/iron transp 100.0 3.3E-44 7.1E-49 325.6 21.9 202 4-219 24-229 (272)
227 PRK09700 D-allose transporter 100.0 3E-44 6.5E-49 352.2 22.9 199 4-215 280-493 (510)
228 cd03245 ABCC_bacteriocin_expor 100.0 1.9E-44 4.2E-49 316.8 19.2 193 4-213 21-220 (220)
229 PRK13549 xylose transporter AT 100.0 2.8E-44 6.1E-49 352.1 22.5 202 4-218 279-492 (506)
230 PRK14265 phosphate ABC transpo 100.0 1.2E-43 2.7E-48 322.3 24.9 200 4-219 37-257 (274)
231 PRK14246 phosphate ABC transpo 100.0 1.6E-43 3.4E-48 318.8 24.9 200 4-219 27-240 (257)
232 PRK14243 phosphate transporter 100.0 9.6E-44 2.1E-48 321.3 23.6 200 4-219 27-247 (264)
233 PRK13538 cytochrome c biogenes 100.0 5E-44 1.1E-48 311.2 20.9 182 4-204 18-202 (204)
234 PRK14266 phosphate ABC transpo 100.0 1.5E-43 3.3E-48 317.1 24.5 202 4-219 20-233 (250)
235 COG4559 ABC-type hemin transpo 100.0 2.2E-44 4.7E-49 307.4 17.9 203 4-220 18-230 (259)
236 PRK10762 D-ribose transporter 100.0 4.6E-44 1E-48 350.2 22.8 202 4-218 269-482 (501)
237 PRK11288 araG L-arabinose tran 100.0 3.3E-44 7.2E-49 351.2 21.5 202 4-218 270-483 (501)
238 cd03232 ABC_PDR_domain2 The pl 100.0 8.1E-44 1.7E-48 307.3 20.9 166 4-213 24-192 (192)
239 cd03213 ABCG_EPDR ABCG transpo 100.0 1.2E-43 2.7E-48 306.7 21.8 166 4-213 26-194 (194)
240 PRK15439 autoinducer 2 ABC tra 100.0 6.9E-44 1.5E-48 349.7 22.9 202 4-218 280-490 (510)
241 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.5E-43 3.3E-48 312.7 22.7 186 4-213 39-224 (224)
242 cd03231 ABC_CcmA_heme_exporter 100.0 1E-43 2.2E-48 308.7 20.5 179 4-204 17-198 (201)
243 cd03248 ABCC_TAP TAP, the Tran 100.0 3.9E-44 8.5E-49 316.2 17.9 190 4-209 31-226 (226)
244 TIGR01166 cbiO cobalt transpor 100.0 1.1E-43 2.3E-48 305.7 20.0 173 4-191 9-188 (190)
245 PRK13543 cytochrome c biogenes 100.0 1.9E-43 4.2E-48 309.8 21.9 184 4-206 28-212 (214)
246 PRK09580 sufC cysteine desulfu 100.0 5.7E-43 1.2E-47 312.8 24.5 203 4-218 18-233 (248)
247 TIGR02633 xylG D-xylose ABC tr 100.0 1.7E-43 3.6E-48 346.1 22.4 201 4-216 277-488 (500)
248 PRK14252 phosphate ABC transpo 100.0 6E-43 1.3E-47 316.1 24.2 202 4-219 33-248 (265)
249 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.4E-43 3E-48 358.6 22.4 192 4-219 470-672 (686)
250 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.6E-43 3.5E-48 321.5 20.2 194 4-220 21-225 (275)
251 COG1132 MdlB ABC-type multidru 100.0 1.3E-43 2.9E-48 351.7 21.2 203 4-220 346-552 (567)
252 PRK14264 phosphate ABC transpo 100.0 8E-43 1.7E-47 321.6 24.7 204 4-219 62-288 (305)
253 PRK13546 teichoic acids export 100.0 1.4E-42 3.1E-47 313.7 25.7 192 4-220 41-232 (264)
254 PRK09544 znuC high-affinity zi 100.0 4.2E-43 9E-48 315.1 21.9 186 4-219 21-208 (251)
255 TIGR01257 rim_protein retinal- 100.0 3.4E-43 7.3E-48 380.2 25.4 203 4-222 1956-2161(2272)
256 COG4161 ArtP ABC-type arginine 100.0 1.2E-43 2.6E-48 291.7 16.6 198 4-216 19-226 (242)
257 COG4988 CydD ABC-type transpor 100.0 1.3E-43 2.8E-48 340.5 19.6 195 4-219 338-542 (559)
258 COG4604 CeuD ABC-type enteroch 100.0 1.5E-44 3.2E-49 305.4 11.3 204 4-220 18-225 (252)
259 PRK11176 lipid transporter ATP 100.0 2.5E-43 5.4E-48 350.6 21.8 196 4-219 360-566 (582)
260 cd03230 ABC_DR_subfamily_A Thi 100.0 4.4E-43 9.5E-48 297.9 20.1 154 4-209 17-173 (173)
261 COG1129 MglA ABC-type sugar tr 100.0 4.1E-43 8.9E-48 335.8 22.2 198 4-214 25-228 (500)
262 cd03244 ABCC_MRP_domain2 Domai 100.0 2.6E-43 5.6E-48 309.8 19.1 185 4-214 21-220 (221)
263 TIGR02324 CP_lyasePhnL phospho 100.0 6.4E-43 1.4E-47 308.1 21.5 186 4-205 25-223 (224)
264 cd03215 ABC_Carb_Monos_II This 100.0 4.6E-43 9.9E-48 300.1 19.8 158 4-209 17-182 (182)
265 PRK10790 putative multidrug tr 100.0 5E-43 1.1E-47 349.1 23.2 194 4-219 358-562 (592)
266 KOG0058|consensus 100.0 1.8E-43 3.9E-48 345.6 19.2 203 4-220 485-691 (716)
267 PRK10938 putative molybdenum t 100.0 3.1E-43 6.7E-48 343.5 20.8 192 4-219 20-223 (490)
268 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3E-43 6.5E-48 357.5 21.3 194 4-220 496-700 (710)
269 cd03288 ABCC_SUR2 The SUR doma 100.0 7.9E-43 1.7E-47 314.1 21.3 199 4-219 38-242 (257)
270 TIGR01257 rim_protein retinal- 100.0 1E-42 2.3E-47 376.4 26.0 200 4-220 947-1149(2272)
271 cd03217 ABC_FeS_Assembly ABC-t 100.0 1E-42 2.2E-47 302.3 20.9 170 4-221 17-194 (200)
272 TIGR01189 ccmA heme ABC export 100.0 8.2E-43 1.8E-47 302.1 20.1 178 4-203 17-197 (198)
273 cd03369 ABCC_NFT1 Domain 2 of 100.0 1E-42 2.2E-47 303.4 20.6 179 4-215 25-207 (207)
274 TIGR03375 type_I_sec_LssB type 100.0 6.2E-43 1.3E-47 354.3 21.8 197 4-221 482-689 (694)
275 cd03229 ABC_Class3 This class 100.0 7.2E-43 1.6E-47 297.8 18.7 156 4-208 17-178 (178)
276 TIGR01842 type_I_sec_PrtD type 100.0 1.3E-42 2.9E-47 343.0 22.7 203 4-219 335-541 (544)
277 PRK13539 cytochrome c biogenes 100.0 2E-42 4.3E-47 301.9 20.8 181 4-206 19-200 (207)
278 COG3845 ABC-type uncharacteriz 100.0 1.2E-42 2.6E-47 327.4 20.4 199 3-214 20-223 (501)
279 cd03214 ABC_Iron-Siderophores_ 100.0 7.1E-43 1.5E-47 298.4 17.1 161 4-213 16-180 (180)
280 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.1E-42 1.1E-46 307.1 23.4 187 4-217 11-204 (246)
281 TIGR01193 bacteriocin_ABC ABC- 100.0 1E-42 2.2E-47 353.5 21.0 195 4-219 491-696 (708)
282 PRK13540 cytochrome c biogenes 100.0 1.6E-42 3.5E-47 300.9 19.1 177 4-202 18-197 (200)
283 COG4172 ABC-type uncharacteriz 100.0 1.8E-42 4E-47 318.8 20.4 202 4-219 304-515 (534)
284 PRK11160 cysteine/glutathione 100.0 1.2E-42 2.7E-47 345.3 20.8 195 4-219 357-561 (574)
285 cd03246 ABCC_Protease_Secretio 100.0 2E-42 4.3E-47 293.9 18.7 151 4-209 19-173 (173)
286 KOG0055|consensus 100.0 7.8E-43 1.7E-47 357.5 19.0 203 4-220 370-576 (1228)
287 PRK13657 cyclic beta-1,2-gluca 100.0 2.9E-42 6.4E-47 343.4 22.6 195 4-219 352-557 (588)
288 TIGR00958 3a01208 Conjugate Tr 100.0 1.7E-42 3.6E-47 351.9 21.2 194 4-220 498-702 (711)
289 cd03247 ABCC_cytochrome_bd The 100.0 2.8E-42 6.2E-47 294.1 19.0 157 4-213 19-178 (178)
290 COG4619 ABC-type uncharacteriz 100.0 2.4E-43 5.1E-48 291.3 11.8 188 4-209 20-212 (223)
291 PRK13545 tagH teichoic acids e 100.0 1.4E-41 3E-46 328.4 25.4 192 4-220 41-232 (549)
292 TIGR02203 MsbA_lipidA lipid A 100.0 3.8E-42 8.2E-47 341.2 21.5 196 4-219 349-555 (571)
293 KOG0057|consensus 100.0 2E-42 4.2E-47 328.8 18.4 195 4-220 369-574 (591)
294 PRK15177 Vi polysaccharide exp 100.0 1.8E-41 3.8E-46 297.4 21.7 192 4-224 4-196 (213)
295 PRK10789 putative multidrug tr 100.0 7.7E-42 1.7E-46 339.2 21.2 195 4-219 332-537 (569)
296 TIGR01846 type_I_sec_HlyB type 100.0 8.5E-42 1.8E-46 346.0 21.9 195 4-219 474-679 (694)
297 PRK10982 galactose/methyl gala 100.0 1.1E-41 2.4E-46 332.6 21.8 200 4-216 265-476 (491)
298 TIGR02204 MsbA_rel ABC transpo 100.0 8.9E-42 1.9E-46 338.9 21.4 195 4-219 357-562 (576)
299 cd03250 ABCC_MRP_domain1 Domai 100.0 1.2E-41 2.6E-46 296.0 19.4 180 4-208 22-204 (204)
300 cd03290 ABCC_SUR1_N The SUR do 100.0 1.9E-41 4.2E-46 297.6 20.7 180 4-208 18-218 (218)
301 PRK13541 cytochrome c biogenes 100.0 1.3E-41 2.9E-46 294.0 18.8 175 5-201 18-192 (195)
302 TIGR01192 chvA glucan exporter 100.0 2E-41 4.2E-46 337.3 22.7 195 4-219 352-557 (585)
303 cd03228 ABCC_MRP_Like The MRP 100.0 2.8E-41 6.2E-46 286.2 18.8 149 4-208 19-171 (171)
304 PTZ00265 multidrug resistance 100.0 1.9E-41 4.2E-46 363.8 20.9 200 4-219 1185-1451(1466)
305 PRK15064 ABC transporter ATP-b 100.0 1E-40 2.3E-45 328.6 23.0 193 4-219 18-241 (530)
306 COG4608 AppF ABC-type oligopep 100.0 4.2E-41 9.1E-46 298.5 17.9 169 4-220 30-199 (268)
307 PRK10938 putative molybdenum t 100.0 4.6E-41 9.9E-46 328.2 19.0 198 4-213 277-485 (490)
308 COG0396 sufC Cysteine desulfur 100.0 4.6E-40 9.9E-45 284.2 22.4 214 4-229 21-242 (251)
309 PRK10535 macrolide transporter 100.0 2.8E-40 6.1E-45 332.2 24.5 199 4-219 25-231 (648)
310 PRK11819 putative ABC transpor 100.0 1.8E-40 3.8E-45 328.7 22.3 191 4-218 24-248 (556)
311 cd03291 ABCC_CFTR1 The CFTR su 100.0 5.2E-40 1.1E-44 299.5 23.0 185 4-219 54-246 (282)
312 cd03216 ABC_Carb_Monos_I This 100.0 3.1E-40 6.7E-45 278.0 19.3 141 4-211 17-162 (163)
313 COG4586 ABC-type uncharacteriz 100.0 6.5E-41 1.4E-45 295.4 15.7 203 4-221 41-247 (325)
314 cd03223 ABCD_peroxisomal_ALDP 100.0 3E-40 6.5E-45 278.9 19.1 147 4-208 18-164 (166)
315 COG4618 ArpD ABC-type protease 100.0 1E-40 2.3E-45 314.5 18.0 206 4-222 353-562 (580)
316 COG4987 CydC ABC-type transpor 100.0 5.4E-41 1.2E-45 318.7 15.9 195 4-219 355-560 (573)
317 PRK15064 ABC transporter ATP-b 100.0 4E-40 8.6E-45 324.5 22.4 185 4-219 336-524 (530)
318 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.4E-40 1.2E-44 325.0 22.6 193 4-220 22-248 (552)
319 KOG0065|consensus 100.0 2.1E-40 4.5E-45 339.9 19.4 272 4-278 132-416 (1391)
320 PRK13409 putative ATPase RIL; 100.0 5.1E-40 1.1E-44 326.4 21.7 182 4-215 356-537 (590)
321 KOG0055|consensus 100.0 2.1E-40 4.4E-45 339.8 19.3 203 4-220 1007-1213(1228)
322 TIGR02868 CydC thiol reductant 100.0 1.5E-40 3.3E-45 327.2 17.5 168 4-190 352-529 (529)
323 TIGR02857 CydD thiol reductant 100.0 2.9E-40 6.3E-45 325.2 18.9 180 4-204 339-529 (529)
324 PLN03232 ABC transporter C fam 100.0 6.7E-40 1.4E-44 353.8 21.2 194 4-219 1253-1457(1495)
325 PLN03130 ABC transporter C fam 100.0 9.8E-40 2.1E-44 353.5 22.5 195 4-220 1256-1461(1622)
326 COG1101 PhnK ABC-type uncharac 100.0 9E-40 2E-44 279.6 17.4 199 4-214 23-232 (263)
327 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.3E-39 2.8E-44 293.0 18.9 184 4-211 18-218 (255)
328 COG4172 ABC-type uncharacteriz 100.0 2.1E-39 4.7E-44 298.6 19.9 206 4-220 27-247 (534)
329 PRK11819 putative ABC transpor 100.0 4.4E-39 9.5E-44 318.7 22.8 187 4-218 341-531 (556)
330 PTZ00243 ABC transporter; Prov 100.0 2.7E-39 5.9E-44 349.4 22.2 194 4-219 1327-1532(1560)
331 PRK10522 multidrug transporter 100.0 2.4E-39 5.1E-44 320.1 19.9 187 4-212 340-530 (547)
332 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.8E-39 1.5E-43 317.2 22.9 186 4-217 339-528 (552)
333 COG4674 Uncharacterized ABC-ty 100.0 6.9E-40 1.5E-44 276.6 13.3 202 4-219 22-234 (249)
334 COG1119 ModF ABC-type molybden 100.0 9.6E-40 2.1E-44 284.9 13.9 199 4-214 48-256 (257)
335 TIGR00957 MRP_assoc_pro multi 100.0 4.3E-39 9.3E-44 348.0 22.0 195 4-220 1303-1508(1522)
336 COG4136 ABC-type uncharacteriz 100.0 1.2E-39 2.6E-44 265.0 13.1 186 5-204 20-207 (213)
337 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.8E-39 1E-43 318.4 20.1 188 4-212 359-551 (555)
338 PTZ00265 multidrug resistance 100.0 3.9E-39 8.4E-44 346.1 20.9 194 4-207 402-655 (1466)
339 COG4167 SapF ABC-type antimicr 100.0 1.7E-38 3.7E-43 265.9 19.2 202 4-219 30-238 (267)
340 cd03238 ABC_UvrA The excision 100.0 3.6E-38 7.8E-43 268.5 19.9 152 4-209 12-166 (176)
341 PRK10636 putative ABC transpor 100.0 3E-38 6.6E-43 316.9 22.0 185 4-220 329-517 (638)
342 TIGR01271 CFTR_protein cystic 100.0 3.9E-38 8.5E-43 339.8 23.2 193 4-219 1236-1439(1490)
343 COG1134 TagH ABC-type polysacc 100.0 1.2E-37 2.5E-42 272.0 21.4 196 4-224 44-240 (249)
344 PRK11147 ABC transporter ATPas 100.0 5.6E-38 1.2E-42 315.1 20.3 187 4-218 336-526 (635)
345 KOG0056|consensus 100.0 7.2E-39 1.6E-43 300.4 11.7 203 4-220 555-761 (790)
346 KOG0059|consensus 100.0 4.3E-38 9.2E-43 325.2 18.6 203 4-222 582-789 (885)
347 PLN03073 ABC transporter F fam 100.0 2.3E-37 5E-42 312.9 23.4 186 4-219 526-713 (718)
348 cd03222 ABC_RNaseL_inhibitor T 100.0 2.1E-37 4.6E-42 264.0 18.8 139 7-216 19-159 (177)
349 PRK10636 putative ABC transpor 100.0 2.6E-37 5.7E-42 310.2 21.7 191 4-218 18-234 (638)
350 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.6E-37 5.7E-42 255.2 17.3 128 4-208 17-144 (144)
351 PRK11147 ABC transporter ATPas 100.0 6.7E-37 1.4E-41 307.3 22.1 191 4-219 20-242 (635)
352 PRK13409 putative ATPase RIL; 100.0 1.5E-37 3.3E-42 308.7 17.3 177 4-207 91-287 (590)
353 COG4133 CcmA ABC-type transpor 100.0 5E-37 1.1E-41 257.9 15.2 170 4-191 19-191 (209)
354 TIGR00954 3a01203 Peroxysomal 100.0 5.8E-37 1.3E-41 308.7 18.5 183 4-205 469-652 (659)
355 TIGR01271 CFTR_protein cystic 100.0 7.2E-36 1.6E-40 322.3 24.7 192 4-219 443-635 (1490)
356 PLN03232 ABC transporter C fam 100.0 2.8E-36 6.1E-41 325.8 21.3 186 4-219 634-827 (1495)
357 PLN03130 ABC transporter C fam 100.0 4.6E-36 1E-40 325.0 22.2 185 4-219 634-827 (1622)
358 COG4107 PhnK ABC-type phosphon 100.0 2.3E-36 5E-41 251.4 15.2 197 4-219 23-240 (258)
359 cd00267 ABC_ATPase ABC (ATP-bi 100.0 7.3E-36 1.6E-40 249.4 18.0 138 4-208 16-157 (157)
360 TIGR00957 MRP_assoc_pro multi 100.0 7.5E-36 1.6E-40 322.9 21.6 193 4-219 655-849 (1522)
361 COG5265 ATM1 ABC-type transpor 100.0 1.3E-36 2.7E-41 281.6 13.2 203 4-220 280-486 (497)
362 PTZ00243 ABC transporter; Prov 100.0 2.5E-35 5.5E-40 318.7 23.3 190 4-219 677-869 (1560)
363 COG0488 Uup ATPase components 100.0 3.6E-35 7.7E-40 286.5 19.9 191 4-218 20-238 (530)
364 cd03270 ABC_UvrA_I The excisio 100.0 5.4E-34 1.2E-38 252.2 21.5 185 4-213 12-226 (226)
365 PF00005 ABC_tran: ABC transpo 100.0 1.2E-34 2.7E-39 235.7 11.5 132 4-158 2-137 (137)
366 cd03271 ABC_UvrA_II The excisi 100.0 2.1E-33 4.6E-38 252.8 19.6 192 4-215 12-261 (261)
367 PLN03073 ABC transporter F fam 100.0 2.3E-34 5E-39 291.1 14.7 200 4-218 194-429 (718)
368 cd03278 ABC_SMC_barmotin Barmo 100.0 6.9E-34 1.5E-38 246.6 13.8 166 4-206 14-190 (197)
369 KOG0054|consensus 100.0 6.8E-33 1.5E-37 289.9 19.8 188 3-220 537-731 (1381)
370 KOG0054|consensus 100.0 1.4E-32 3E-37 287.6 18.9 202 4-220 1157-1362(1381)
371 COG4138 BtuD ABC-type cobalami 100.0 4.1E-34 9E-39 238.0 5.4 194 5-220 17-221 (248)
372 COG1129 MglA ABC-type sugar tr 100.0 1.4E-31 3E-36 256.6 20.1 199 4-215 276-485 (500)
373 COG4778 PhnL ABC-type phosphon 100.0 1.9E-32 4.1E-37 227.1 12.1 187 4-206 28-227 (235)
374 COG0488 Uup ATPase components 100.0 2E-31 4.2E-36 260.3 20.2 182 4-218 339-523 (530)
375 cd03273 ABC_SMC2_euk Eukaryoti 100.0 7.8E-32 1.7E-36 241.8 9.7 181 9-205 22-242 (251)
376 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.7E-30 3.7E-35 231.5 16.7 175 13-205 23-234 (243)
377 cd03240 ABC_Rad50 The catalyti 100.0 2.2E-30 4.8E-35 225.8 12.5 165 6-206 16-197 (204)
378 cd03279 ABC_sbcCD SbcCD and ot 100.0 1.4E-29 3.1E-34 221.9 14.7 178 5-208 19-210 (213)
379 cd03274 ABC_SMC4_euk Eukaryoti 100.0 1.1E-31 2.3E-36 235.4 1.2 168 14-206 26-204 (212)
380 PRK00635 excinuclease ABC subu 100.0 1.6E-28 3.5E-33 263.0 23.5 138 71-220 759-906 (1809)
381 PRK00349 uvrA excinuclease ABC 100.0 1.7E-27 3.8E-32 245.3 24.5 125 75-219 792-926 (943)
382 COG3845 ABC-type uncharacteriz 100.0 2.6E-27 5.6E-32 223.8 17.9 201 4-217 275-489 (501)
383 COG4170 SapD ABC-type antimicr 100.0 2.1E-28 4.5E-33 209.4 9.1 210 4-219 24-247 (330)
384 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.9E-27 4.1E-32 206.4 14.4 168 5-208 14-192 (198)
385 COG4615 PvdE ABC-type sideroph 99.9 6.4E-28 1.4E-32 222.3 10.1 183 5-213 341-530 (546)
386 TIGR00630 uvra excinuclease AB 99.9 2.6E-26 5.7E-31 236.3 22.7 124 75-218 790-923 (924)
387 COG4178 ABC-type uncharacteriz 99.9 2.2E-26 4.7E-31 224.8 15.9 177 4-205 410-587 (604)
388 COG1245 Predicted ATPase, RNas 99.9 1.9E-26 4.1E-31 215.7 14.6 169 8-205 362-530 (591)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.2E-26 2.5E-31 207.9 9.7 186 7-206 17-233 (247)
390 KOG0927|consensus 99.9 9.1E-27 2E-31 221.6 9.4 182 4-216 407-592 (614)
391 KOG0927|consensus 99.9 6.9E-26 1.5E-30 215.6 13.2 197 4-218 92-307 (614)
392 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.5E-24 3.3E-29 188.2 9.9 144 5-213 19-172 (200)
393 cd03277 ABC_SMC5_euk Eukaryoti 99.9 6.4E-24 1.4E-28 186.3 11.7 81 127-208 124-211 (213)
394 KOG2355|consensus 99.9 1.7E-23 3.6E-28 178.7 12.9 189 5-218 32-235 (291)
395 KOG0062|consensus 99.9 3.7E-24 8E-29 202.8 9.2 183 5-219 98-284 (582)
396 KOG0060|consensus 99.9 8.3E-23 1.8E-27 195.9 15.7 184 4-206 452-641 (659)
397 COG1245 Predicted ATPase, RNas 99.9 1.7E-23 3.7E-28 196.0 9.5 171 10-206 97-288 (591)
398 KOG0062|consensus 99.9 6.1E-23 1.3E-27 194.6 12.9 182 5-216 382-565 (582)
399 KOG0066|consensus 99.9 1.1E-22 2.3E-27 189.9 12.2 180 5-216 605-787 (807)
400 cd03239 ABC_SMC_head The struc 99.9 1.2E-21 2.6E-26 167.3 15.8 74 130-206 95-172 (178)
401 cd03241 ABC_RecN RecN ATPase i 99.9 1.9E-21 4E-26 177.0 14.8 77 128-208 169-249 (276)
402 KOG0064|consensus 99.9 1.7E-22 3.6E-27 191.9 6.9 182 4-204 499-681 (728)
403 cd03227 ABC_Class2 ABC-type Cl 99.9 2.2E-21 4.7E-26 163.1 12.9 74 130-206 78-155 (162)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.9 4.3E-22 9.2E-27 175.8 7.6 149 4-214 21-175 (222)
405 PRK00635 excinuclease ABC subu 99.9 2.1E-20 4.6E-25 201.0 21.8 126 75-220 1661-1796(1809)
406 cd03283 ABC_MutS-like MutS-lik 99.9 1.1E-21 2.4E-26 170.4 9.8 142 7-204 19-163 (199)
407 COG2401 ABC-type ATPase fused 99.9 5.6E-21 1.2E-25 177.5 12.8 180 4-210 400-588 (593)
408 COG0178 UvrA Excinuclease ATPa 99.8 4.9E-20 1.1E-24 182.6 18.8 126 75-220 784-919 (935)
409 PRK00349 uvrA excinuclease ABC 99.8 3.3E-20 7.2E-25 191.7 16.1 136 72-219 434-584 (943)
410 cd03243 ABC_MutS_homologs The 99.8 6.6E-21 1.4E-25 165.6 8.7 153 6-216 22-175 (202)
411 TIGR00630 uvra excinuclease AB 99.8 6E-20 1.3E-24 189.4 16.9 136 73-219 433-582 (924)
412 cd03242 ABC_RecF RecF is a rec 99.8 7E-19 1.5E-23 159.6 17.9 76 128-209 182-269 (270)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.8 7.5E-19 1.6E-23 153.1 8.7 130 4-190 20-151 (204)
414 KOG0066|consensus 99.8 1E-19 2.3E-24 170.0 2.7 193 5-216 282-495 (807)
415 cd03284 ABC_MutS1 MutS1 homolo 99.7 3.9E-18 8.5E-23 149.9 9.6 153 4-218 22-179 (216)
416 TIGR02858 spore_III_AA stage I 99.7 9.1E-18 2E-22 152.0 11.3 139 14-218 112-267 (270)
417 KOG0063|consensus 99.7 1.4E-17 3.1E-22 155.3 10.6 172 6-205 355-531 (592)
418 smart00534 MUTSac ATPase domai 99.7 5.1E-17 1.1E-21 139.5 6.3 78 128-210 60-140 (185)
419 PRK00064 recF recombination pr 99.7 9.5E-15 2E-19 137.8 19.4 77 128-209 272-359 (361)
420 cd03281 ABC_MSH5_euk MutS5 hom 99.6 2E-15 4.4E-20 132.5 13.2 124 7-190 21-154 (213)
421 PF02463 SMC_N: RecF/RecN/SMC 99.6 1.3E-16 2.9E-21 139.9 5.5 72 130-205 137-212 (220)
422 TIGR01069 mutS2 MutS2 family p 99.6 7.5E-16 1.6E-20 157.4 8.7 128 6-190 314-445 (771)
423 KOG0063|consensus 99.6 4.3E-15 9.3E-20 138.9 10.3 176 11-205 98-287 (592)
424 PTZ00132 GTP-binding nuclear p 99.5 7.2E-15 1.6E-19 128.5 6.5 47 130-176 151-204 (215)
425 TIGR00634 recN DNA repair prot 99.5 5.4E-14 1.2E-18 139.9 10.5 77 128-208 439-519 (563)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.5 2.3E-13 4.9E-18 120.1 12.9 135 4-198 22-160 (222)
427 cd00820 PEPCK_HprK Phosphoenol 99.5 3E-14 6.5E-19 111.2 5.9 69 3-83 5-77 (107)
428 cd01128 rho_factor Transcripti 99.5 1.3E-13 2.8E-18 123.6 10.5 74 129-209 129-211 (249)
429 TIGR00618 sbcc exonuclease Sbc 99.5 1.2E-13 2.6E-18 146.3 11.4 79 127-207 948-1036(1042)
430 PHA02562 46 endonuclease subun 99.5 7.5E-14 1.6E-18 138.6 9.1 78 127-209 466-555 (562)
431 PRK00409 recombination and DNA 99.5 4.6E-14 9.9E-19 144.6 7.4 81 127-211 388-469 (782)
432 PRK10869 recombination and rep 99.5 1.7E-13 3.7E-18 135.8 10.7 75 129-207 430-508 (553)
433 PRK07721 fliI flagellum-specif 99.5 2E-12 4.2E-17 124.5 17.3 166 4-217 150-340 (438)
434 PF13304 AAA_21: AAA domain; P 99.4 5.6E-13 1.2E-17 115.9 10.4 62 128-190 235-299 (303)
435 cd01124 KaiC KaiC is a circadi 99.4 1.3E-12 2.9E-17 111.1 11.8 78 127-205 69-163 (187)
436 PRK13695 putative NTPase; Prov 99.4 1.6E-13 3.5E-18 116.3 4.0 77 129-212 78-156 (174)
437 PRK08533 flagellar accessory p 99.4 2.3E-12 5.1E-17 114.3 11.4 151 7-205 18-184 (230)
438 COG0178 UvrA Excinuclease ATPa 99.4 8.1E-12 1.8E-16 124.8 15.7 137 73-220 427-577 (935)
439 PRK03918 chromosome segregatio 99.4 1.6E-12 3.5E-17 135.5 9.5 77 127-206 786-868 (880)
440 cd03286 ABC_MSH6_euk MutS6 hom 99.4 1.5E-12 3.2E-17 114.6 7.4 138 4-197 21-159 (218)
441 TIGR02788 VirB11 P-type DNA tr 99.3 4.7E-12 1E-16 117.1 10.1 141 7-219 138-280 (308)
442 PRK01156 chromosome segregatio 99.3 5.8E-12 1.3E-16 131.7 10.6 77 127-205 799-883 (895)
443 COG3910 Predicted ATPase [Gene 99.3 1.7E-11 3.8E-16 103.9 11.4 76 130-209 130-206 (233)
444 PRK10246 exonuclease subunit S 99.3 6.7E-12 1.5E-16 132.9 10.4 78 127-206 947-1032(1047)
445 TIGR00606 rad50 rad50. This fa 99.3 9.4E-12 2E-16 134.6 11.0 71 127-198 1197-1277(1311)
446 cd01120 RecA-like_NTPases RecA 99.3 2.3E-11 5E-16 100.0 8.7 61 130-191 68-138 (165)
447 PRK13830 conjugal transfer pro 99.3 1.8E-10 3.8E-15 119.3 17.0 69 145-215 650-728 (818)
448 TIGR02168 SMC_prok_B chromosom 99.2 1.8E-11 4E-16 130.3 8.5 75 127-205 1087-1165(1179)
449 PRK06793 fliI flagellum-specif 99.2 1.2E-10 2.6E-15 111.5 10.5 148 6-212 149-303 (432)
450 TIGR02169 SMC_prok_A chromosom 99.1 9E-11 2E-15 125.3 9.0 76 127-206 1072-1151(1164)
451 cd01131 PilT Pilus retraction 99.1 3E-10 6.4E-15 98.5 10.3 57 139-205 66-122 (198)
452 PRK02224 chromosome segregatio 99.1 1.6E-10 3.4E-15 120.7 9.6 78 127-207 779-869 (880)
453 PRK06067 flagellar accessory p 99.1 3.2E-09 6.9E-14 94.2 16.1 76 130-206 101-187 (234)
454 TIGR03238 dnd_assoc_3 dnd syst 99.1 1E-10 2.2E-15 112.4 3.9 60 4-68 23-86 (504)
455 cd01125 repA Hexameric Replica 99.0 1.3E-09 2.7E-14 97.1 9.8 46 144-190 108-159 (239)
456 smart00382 AAA ATPases associa 99.0 1.9E-08 4.1E-13 79.4 15.1 119 12-188 1-124 (148)
457 PRK06995 flhF flagellar biosyn 99.0 2.3E-09 5E-14 104.1 10.0 147 5-188 248-400 (484)
458 cd01130 VirB11-like_ATPase Typ 98.9 2.4E-09 5.2E-14 91.8 8.0 78 8-88 20-100 (186)
459 TIGR01420 pilT_fam pilus retra 98.9 5.3E-09 1.1E-13 98.2 10.2 124 11-205 120-243 (343)
460 TIGR03881 KaiC_arch_4 KaiC dom 98.9 1.3E-09 2.9E-14 96.1 4.7 42 7-52 14-57 (229)
461 TIGR02655 circ_KaiC circadian 98.9 2.7E-10 5.8E-15 111.6 0.2 160 8-205 16-190 (484)
462 PRK07196 fliI flagellum-specif 98.9 1.8E-09 3.9E-14 103.6 5.4 83 4-87 147-239 (434)
463 TIGR00611 recf recF protein. A 98.9 3.4E-09 7.4E-14 100.2 7.1 60 128-191 274-342 (365)
464 COG0419 SbcC ATPase involved i 98.9 7.1E-09 1.5E-13 108.8 9.9 77 127-206 813-897 (908)
465 PRK14079 recF recombination pr 98.8 8.1E-09 1.8E-13 97.2 7.9 77 128-213 262-347 (349)
466 cd02023 UMPK Uridine monophosp 98.8 4.2E-09 9.2E-14 90.9 4.8 112 15-162 1-113 (198)
467 PRK13891 conjugal transfer pro 98.8 2.1E-07 4.6E-12 97.0 17.0 69 140-210 680-751 (852)
468 PRK05399 DNA mismatch repair p 98.8 1.3E-08 2.9E-13 105.7 7.8 67 130-200 667-738 (854)
469 TIGR01026 fliI_yscN ATPase Fli 98.7 1.4E-07 3E-12 91.1 12.7 163 8-217 158-345 (440)
470 PRK09825 idnK D-gluconate kina 98.7 7.9E-09 1.7E-13 88.1 3.6 65 12-83 2-69 (176)
471 TIGR02680 conserved hypothetic 98.7 2.9E-08 6.3E-13 107.7 7.9 60 127-190 1245-1316(1353)
472 PRK13898 type IV secretion sys 98.6 5.4E-07 1.2E-11 93.5 14.8 47 144-191 639-686 (800)
473 PLN03210 Resistant to P. syrin 98.6 1.2E-07 2.5E-12 102.0 10.2 44 7-52 201-244 (1153)
474 TIGR00416 sms DNA repair prote 98.6 1.8E-07 3.9E-12 91.0 8.4 63 146-208 169-247 (454)
475 PRK10078 ribose 1,5-bisphospho 98.5 1E-07 2.2E-12 81.6 5.0 38 13-56 2-39 (186)
476 PRK09270 nucleoside triphospha 98.5 1.3E-07 2.8E-12 83.8 5.1 73 11-87 31-107 (229)
477 cd01122 GP4d_helicase GP4d_hel 98.5 3E-06 6.6E-11 76.5 13.9 55 135-189 126-190 (271)
478 PRK06002 fliI flagellum-specif 98.5 2.4E-07 5.3E-12 89.2 6.7 60 8-70 160-230 (450)
479 PF13555 AAA_29: P-loop contai 98.5 2.2E-07 4.7E-12 65.4 4.6 34 6-39 15-49 (62)
480 PRK06315 type III secretion sy 98.5 3.4E-07 7.4E-12 88.2 7.3 103 7-112 158-277 (442)
481 cd01121 Sms Sms (bacterial rad 98.5 6.8E-07 1.5E-11 84.8 9.2 62 146-207 157-234 (372)
482 PF13558 SbcCD_C: Putative exo 98.5 4.2E-07 9.2E-12 68.9 6.2 48 127-174 30-90 (90)
483 TIGR00152 dephospho-CoA kinase 98.4 2.9E-07 6.2E-12 78.9 5.5 73 132-207 60-133 (188)
484 TIGR00235 udk uridine kinase. 98.4 8.3E-08 1.8E-12 83.6 2.2 29 11-39 4-32 (207)
485 TIGR02903 spore_lon_C ATP-depe 98.4 6.5E-07 1.4E-11 90.2 8.9 112 13-174 175-291 (615)
486 TIGR00554 panK_bact pantothena 98.4 2.3E-07 5.1E-12 85.0 4.4 72 13-88 62-138 (290)
487 PF09818 ABC_ATPase: Predicted 98.4 8.9E-06 1.9E-10 77.6 15.0 81 128-209 321-416 (448)
488 PRK03846 adenylylsulfate kinas 98.4 2.1E-07 4.5E-12 80.6 3.5 56 11-68 22-77 (198)
489 PRK10416 signal recognition pa 98.4 2.6E-07 5.7E-12 85.8 4.3 71 11-84 112-192 (318)
490 PRK01889 GTPase RsgA; Reviewed 98.4 5.1E-07 1.1E-11 85.2 6.0 71 9-83 191-262 (356)
491 cd01876 YihA_EngB The YihA (En 98.4 4.6E-07 1E-11 74.2 5.0 44 128-175 121-169 (170)
492 TIGR02322 phosphon_PhnN phosph 98.4 1E-06 2.3E-11 74.6 7.1 27 13-39 1-27 (179)
493 PF00488 MutS_V: MutS domain V 98.4 2.4E-05 5.1E-10 69.8 16.1 51 146-198 121-172 (235)
494 PRK13873 conjugal transfer ATP 98.3 2.1E-05 4.6E-10 81.9 17.5 62 145-207 633-703 (811)
495 PRK08149 ATP synthase SpaL; Va 98.3 5.8E-07 1.3E-11 86.3 5.5 63 5-68 144-214 (428)
496 PTZ00035 Rad51 protein; Provis 98.3 7.3E-07 1.6E-11 83.6 5.5 46 8-53 113-162 (337)
497 PRK07960 fliI flagellum-specif 98.3 5.4E-07 1.2E-11 86.8 4.7 66 5-70 167-239 (455)
498 PRK13764 ATPase; Provisional 98.3 1.8E-06 3.8E-11 86.2 8.3 63 144-215 321-400 (602)
499 TIGR02524 dot_icm_DotB Dot/Icm 98.3 1.1E-06 2.3E-11 83.1 5.9 59 11-69 132-193 (358)
500 PRK00300 gmk guanylate kinase; 98.3 6.9E-07 1.5E-11 77.3 3.8 28 11-38 3-30 (205)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-58 Score=396.43 Aligned_cols=201 Identities=27% Similarity=0.440 Sum_probs=182.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.+||+++++||+++|+||||||||||||||+++.+|+ +|+|+++|+++.. .+|+++|+|||+..+||++||.
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvl 95 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVL 95 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHH
Confidence 4899999999999999999999999999999999995 8999999987742 4789999999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...-. ..++.+..+.+.++|+++||.+.++.+ |.+|||||||||+|||||+++|+++|+|||||
T Consensus 96 eNv~lap~~v~--~~~k~eA~~~A~~lL~~VGL~~ka~~y--------P~qLSGGQqQRVAIARALaM~P~vmLFDEPTS 165 (240)
T COG1126 96 ENVTLAPVKVK--KLSKAEAREKALELLEKVGLADKADAY--------PAQLSGGQQQRVAIARALAMDPKVMLFDEPTS 165 (240)
T ss_pred HHHHhhhHHHc--CCCHHHHHHHHHHHHHHcCchhhhhhC--------ccccCcHHHHHHHHHHHHcCCCCEEeecCCcc
Confidence 99999764322 234556667789999999999999999 67799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||....++++.+++++ +.|+|.|+|||++ .++.+.+|||++|++|+++..|+|++++
T Consensus 166 ALDPElv~EVL~vm~~LA-~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 166 ALDPELVGEVLDVMKDLA-EEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred cCCHHHHHHHHHHHHHHH-HcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 999999999999999995 5699999999997 5899999999999999999999999665
No 2
>KOG0061|consensus
Probab=100.00 E-value=1e-55 Score=439.77 Aligned_cols=258 Identities=45% Similarity=0.763 Sum_probs=233.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|||++++|||++||+|||||||||||++|+|+...+...+|+|++||++... .+++.+|||.|++.++|++||+|++.
T Consensus 47 ~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~ 126 (613)
T KOG0061|consen 47 KGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLR 126 (613)
T ss_pred eCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHH
Confidence 48999999999999999999999999999999988754579999999977654 58889999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
|.+.++.+...+..++.++++++++.+||.+++|+.+|+... +++||||||||+||..|+++|.||+|||||+|||+
T Consensus 127 f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~---rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS 203 (613)
T KOG0061|consen 127 FSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGI---RGLSGGERKRVSIALELLTDPSILFLDEPTSGLDS 203 (613)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCC---CccccchhhHHHHHHHHHcCCCEEEecCCCCCcch
Confidence 999999887777788889999999999999999999998654 56999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHHCCCCCCCCCChHHHHHHh
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKS 242 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 242 (290)
.++.++++.|++++++ |+|||++.|||+.++++++|++++|.+|+++|.|+++++.++|...|++||...||+||+++.
T Consensus 204 ~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l 282 (613)
T KOG0061|consen 204 FSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDL 282 (613)
T ss_pred hhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHH
Confidence 9999999999999766 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC-CchhhhHHHHHHHHHHHhh
Q psy2520 243 LAVT-TNDELSSRRRLKRICDEFS 265 (290)
Q Consensus 243 ~~~~-~~~~~~~~~~~~~l~~~~~ 265 (290)
+..+ ...+.....+.......++
T Consensus 283 ~s~~~~~~~~~~~~~~~~~~~~~~ 306 (613)
T KOG0061|consen 283 LSVDSGTRELEEAVRIAKLINKFS 306 (613)
T ss_pred HccCCCchhHHhHHHHHHHhhhcc
Confidence 8764 3333333444444455554
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-56 Score=398.01 Aligned_cols=201 Identities=26% Similarity=0.424 Sum_probs=187.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||.|++||++||+|+||||||||+||++++..|+ +|+|.++|+++.. ..|++|||+||+..++...|
T Consensus 23 ~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT 99 (339)
T COG1135 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT 99 (339)
T ss_pred ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccccccch
Confidence 4799999999999999999999999999999999995 8999999998864 36889999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|++|++|.+.+.. .++.+..+++.++++.+||+++.+++ |.+|||||||||+|||||+.+|+|||+|||
T Consensus 100 V~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y--------P~qLSGGQKQRVaIARALa~~P~iLL~DEa 168 (339)
T COG1135 100 VFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY--------PAQLSGGQKQRVAIARALANNPKILLCDEA 168 (339)
T ss_pred HHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC--------chhcCcchhhHHHHHHHHhcCCCEEEecCc
Confidence 9999999988765 34567778899999999999999999 677999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||.+...|+++|++++++.|.||+++||++ +.+.++||||.+|++|+++..|+..+++
T Consensus 169 TSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 169 TSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred cccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999888999999999997 5788999999999999999999998876
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-55 Score=382.65 Aligned_cols=201 Identities=25% Similarity=0.386 Sum_probs=186.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||+|++||+++++|||||||||+||+|++++.|+ +|+|++||+++.. ++|++||||-|...+||++||.|
T Consensus 18 ~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~e 94 (309)
T COG1125 18 DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAE 94 (309)
T ss_pred eeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHH
Confidence 5899999999999999999999999999999999994 8999999999975 58999999999999999999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC--CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM--NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+++...+... ++++..++++++|+.+||. ++.+++ |.+|||||+|||.+||||+.+|++||||||+
T Consensus 95 NIa~VP~L~~w---~k~~i~~r~~ELl~lvgL~p~~~~~Ry--------P~eLSGGQQQRVGv~RALAadP~ilLMDEPF 163 (309)
T COG1125 95 NIATVPKLLGW---DKERIKKRADELLDLVGLDPSEYADRY--------PHELSGGQQQRVGVARALAADPPILLMDEPF 163 (309)
T ss_pred HHHhhhhhcCC---CHHHHHHHHHHHHHHhCCCHHHHhhcC--------chhcCcchhhHHHHHHHHhcCCCeEeecCCc
Confidence 99998876543 4456667899999999996 478888 6779999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
++|||.++.++.+.++++.++-|+|||+||||+ +++.+++|||++|++|+++..++|++++
T Consensus 164 gALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 164 GALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred cccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 999999999999999999777899999999997 6899999999999999999999999876
No 5
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=7.2e-54 Score=428.60 Aligned_cols=271 Identities=47% Similarity=0.828 Sum_probs=236.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+|+++++||+++|+|||||||||||++|+|+.++....+|+|.+||.++.. .+++.+|||+|++.+++.+||+||+.
T Consensus 42 ~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~ 121 (617)
T TIGR00955 42 KNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLM 121 (617)
T ss_pred cCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHH
Confidence 58999999999999999999999999999999988753357999999999864 46778999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
|++.++.+......++.++++++++.+||.+..|+.+|++.. .++|||||||||+||++|+.+|++++|||||+|||+
T Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~--~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~ 199 (617)
T TIGR00955 122 FQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGR--VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS 199 (617)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCC--CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhH
Confidence 998776554344455667789999999999999999987421 346999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHHCCCCCCCCCChHHHHHHh
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKS 242 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 242 (290)
.++..+++.|+++++ .|+|||+++|+++.++.++||++++|++|++++.|+++++.+++++.|++||...+|+|++.+.
T Consensus 200 ~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~ 278 (617)
T TIGR00955 200 FMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQV 278 (617)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHH
Confidence 999999999999954 5999999999997678999999999999999999999999999999999999999999999998
Q ss_pred hcCCCchhhhHHHHHHHHHHHhhhchhHHhHhhhh
Q psy2520 243 LAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEI 277 (290)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 277 (290)
.......+.......+.+++.|..++.+++....+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 313 (617)
T TIGR00955 279 LAVIPGSENESRERIEKICDSFAVSDIGRDMLVNT 313 (617)
T ss_pred hhcCcccccchHHHHHHHHHHHhcchhhHHHHHHh
Confidence 86554444344556677888898888777655443
No 6
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-54 Score=377.84 Aligned_cols=188 Identities=30% Similarity=0.446 Sum_probs=172.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.||||++.+||+++|+||||||||||||+|+|+.+|+ +|+|.++|+++ ......+|||||++.++|.+||.||+.|
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l 95 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTVLDNVAL 95 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc-CCCCCCEEEEeccCcccchhhHHhhhee
Confidence 4899999999999999999999999999999999995 89999999998 4456789999999999999999999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+..... ....++.+++.++++.+||.++.+++ |++|||||||||+|||||+.+|++||||||+++||..
T Consensus 96 ~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~--------P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDal 164 (248)
T COG1116 96 GLELRG---KSKAEARERAKELLELVGLAGFEDKY--------PHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164 (248)
T ss_pred hhhccc---cchHhHHHHHHHHHHHcCCcchhhcC--------ccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHH
Confidence 987654 23344556789999999999999999 6779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCC
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 207 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G 207 (290)
++..+.+.|.++.++.++||++||||. +|+..++|||++|.++
T Consensus 165 TR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 165 TREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 999999999999888899999999998 5899999999999984
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.3e-54 Score=373.76 Aligned_cols=190 Identities=35% Similarity=0.534 Sum_probs=169.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------c-ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------K-FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~-~~~~ig~v~Q~~~~~~~l 75 (290)
.++||.|++||+++|+|||||||||||++|.|+..|+ +|.|+++|+++.. . .++.||||||+..|+|++
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l 98 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL 98 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC
Confidence 5899999999999999999999999999999999994 8999999998863 2 356799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccC-cccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH-TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
||.||+.+.+.+..... ....+++.++++.+||.+..+ ++ |.+|||||||||+|||||+.+|+++|+|
T Consensus 99 tv~ENv~lpl~~~~~~~---~~~~~~~~~l~~~lgl~~~~~~~~--------p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 99 TVLENVELPLLIAGKSA---GRRKRAAEELLEVLGLEDRLLKKK--------PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CHHHHHHhHHHHcCCCh---hHHHHHHHHHHHhcCChhhhccCC--------chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 99999998765543221 134566788999999997776 66 5669999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
|||.+||+.+...++++|++++++.|+|||+||||+ .+..+|||++.|.+|++
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 999999999999999999999777799999999996 68899999999999984
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.7e-54 Score=383.99 Aligned_cols=215 Identities=27% Similarity=0.402 Sum_probs=187.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||||+|+|+++|. +|+|+++|+++.. .+.+.+|||||.+...+.+||+|
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d 95 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE 95 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEee
Confidence 4899999999999999999999999999999999995 7999999999865 46789999999988888999999
Q ss_pred HHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
.+.++..-+... .....+..+.+.++|+.+|+.+++++.+ .+|||||||||.|||||+++|++|||||||+
T Consensus 96 ~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~--------~~LSGGerQrv~iArALaQ~~~iLLLDEPTs 167 (258)
T COG1120 96 LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--------DELSGGERQRVLIARALAQETPILLLDEPTS 167 (258)
T ss_pred hHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc--------cccChhHHHHHHHHHHHhcCCCEEEeCCCcc
Confidence 999875432211 1122334457889999999999999994 4599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCCC
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCP 230 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~~ 230 (290)
.||...+.+++++++++++++|+|||+++||++ .+.++||++++|++|++++.|+|++++. .-+-+|.++.
T Consensus 168 ~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vygv~~~ 241 (258)
T COG1120 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDAD 241 (258)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhCCceE
Confidence 999999999999999997788999999999985 7999999999999999999999998764 2234555543
No 9
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.8e-54 Score=393.66 Aligned_cols=202 Identities=25% Similarity=0.401 Sum_probs=186.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.++|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.|+|++++. -..+.|+||||+..+||+|||+||+
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Ni 96 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENI 96 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHh
Confidence 5799999999999999999999999999999999995 8999999999986 3568899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|++..+.. .+.+..+++.++.+.++|.+..+++ +.+|||||||||+|||||+.+|+++|||||+|+||
T Consensus 97 af~Lk~~~~---~k~ei~~rV~eva~~L~l~~lL~r~--------P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLD 165 (338)
T COG3839 97 AFGLKLRGV---PKAEIDKRVKEVAKLLGLEHLLNRK--------PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165 (338)
T ss_pred hhhhhhCCC---chHHHHHHHHHHHHHcCChhHHhcC--------cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhh
Confidence 999877542 4456677889999999999999999 67799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
...+..+...|+++.++-|.|+|++|||. .++..++|||++|++|++...|+|.++..
T Consensus 166 a~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 166 AKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999666799999999996 68999999999999999999999998763
No 10
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-53 Score=369.77 Aligned_cols=203 Identities=32% Similarity=0.470 Sum_probs=183.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||++++||+++|+||||||||||||+|.|+++|+ +|+|+++|+++.. .+++++|++||...+|..+|
T Consensus 25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFsslt 101 (263)
T COG1127 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLT 101 (263)
T ss_pred cCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccc
Confidence 5899999999999999999999999999999999995 8999999999854 36789999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|+||+.|..+.+. ..++....+.+..-|+.+||... .+.. |++|||||+||++|||||+.+|+++++||
T Consensus 102 V~eNVafplre~~--~lp~~~i~~lv~~KL~~VGL~~~~~~~~--------PsELSGGM~KRvaLARAialdPell~~DE 171 (263)
T COG1127 102 VFENVAFPLREHT--KLPESLIRELVLMKLELVGLRGAAADLY--------PSELSGGMRKRVALARAIALDPELLFLDE 171 (263)
T ss_pred hhHhhheehHhhc--cCCHHHHHHHHHHHHHhcCCChhhhhhC--------chhhcchHHHHHHHHHHHhcCCCEEEecC
Confidence 9999999876543 23445556667788999999877 7777 66799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+||||.+...+-+++++++..-|.|+++||||. ..+..+|||++++.+|++++.|+++++..
T Consensus 172 PtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 172 PTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred CCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999777799999999998 57999999999999999999999998763
No 11
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.2e-53 Score=386.43 Aligned_cols=204 Identities=33% Similarity=0.461 Sum_probs=183.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||++++|+++||+||||||||||+|+|+|+++|+ +|+|.++|.+... .+++.+||+||++.+++.+||+||
T Consensus 22 ~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~ 98 (293)
T COG1131 22 DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVREN 98 (293)
T ss_pred eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHH
Confidence 4899999999999999999999999999999999994 8999999999865 467889999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.|.+.++.... ....++++++++.++|.+..+++ +++||+|||||++||+||+.+|++|||||||+||
T Consensus 99 l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~--------~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GL 167 (293)
T COG1131 99 LEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK--------VRTLSGGMKQRLSIALALLHDPELLILDEPTSGL 167 (293)
T ss_pred HHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc--------hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCC
Confidence 999998876432 33446788999999999866777 4569999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 222 (290)
||.++.+++++|++++++.|+||+++||.+ .++..+||+|++|++|++++.|+++++...+
T Consensus 168 Dp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 168 DPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 999999999999999665448999999998 5899999999999999999999998866543
No 12
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.8e-52 Score=420.00 Aligned_cols=237 Identities=39% Similarity=0.656 Sum_probs=210.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++||++||+|||||||||||++|+|+.+|+. .+|+|.+||+++....++.+|||+|++.+++.+||+||+.|
T Consensus 85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~-~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 163 (659)
T PLN03211 85 NGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNN-FTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVF 163 (659)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCc-eeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHH
Confidence 47999999999999999999999999999999988742 47999999999865556679999999999999999999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
.+..+.+.....++..++++++++.+||.+..++.+++.. +++|||||||||+||++|+.+|++|||||||+|||+.
T Consensus 164 ~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~---~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~ 240 (659)
T PLN03211 164 CSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSF---IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240 (659)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCC---CCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence 8765533222334445668899999999999988877642 4679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHHCCCCCCCCCChHHHHHHhh
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSL 243 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (290)
++..+++.|+++++ .|+|||+++|++..++.++||++++|++|++++.|+++++.++|++.|++||...||+||++++.
T Consensus 241 ~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~ 319 (659)
T PLN03211 241 AAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLA 319 (659)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHc
Confidence 99999999999954 58999999999965688999999999999999999999999999999999999999999999987
Q ss_pred cC
Q psy2520 244 AV 245 (290)
Q Consensus 244 ~~ 245 (290)
..
T Consensus 320 ~~ 321 (659)
T PLN03211 320 NG 321 (659)
T ss_pred Cc
Confidence 64
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-53 Score=394.87 Aligned_cols=202 Identities=25% Similarity=0.424 Sum_probs=186.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+|++|++||+++|+|||||||||||++|+|+..|+ +|+|.++|++++. -.++.||+|||+..+||+|||+||+
T Consensus 22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NV 98 (352)
T COG3842 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENV 98 (352)
T ss_pred ecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHh
Confidence 5799999999999999999999999999999999995 8999999999976 3578999999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
+|++..+. .....+..+++.++++.++|.++.+++ +.+|||||||||+|||||+.+|++||||||.++||
T Consensus 99 afGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~--------p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD 168 (352)
T COG3842 99 AFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRK--------PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168 (352)
T ss_pred hhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhC--------hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchh
Confidence 99987432 223455667899999999999999999 66699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
..-+.++...|+++.++.|.|.|+||||. .++..++|||++|++|+|...|+|+++.
T Consensus 169 ~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 169 AKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 99999999999999878899999999996 6899999999999999999999999875
No 14
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-53 Score=378.17 Aligned_cols=203 Identities=31% Similarity=0.470 Sum_probs=184.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE---ecCc-c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK---PVEG-K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~---~~~~-~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|||++|+.||++|++|||||||||||++|+|+..|+ .|.|.+||+ +.++ . ..++||||||+..+|++|||.
T Consensus 19 ~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa 95 (345)
T COG1118 19 DDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVA 95 (345)
T ss_pred ccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcccchHH
Confidence 4899999999999999999999999999999999995 899999999 5443 1 346899999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
+||+|+...+. ...+..+.+.++.++|+.+.|++..+++ |.+|||||||||++||||+..|++||||||++
T Consensus 96 ~NIAFGl~~~~-~~p~~~~~r~rv~elL~lvqL~~la~ry--------P~QLSGGQrQRVALARALA~eP~vLLLDEPf~ 166 (345)
T COG1118 96 DNIAFGLKVRK-ERPSEAEIRARVEELLRLVQLEGLADRY--------PAQLSGGQRQRVALARALAVEPKVLLLDEPFG 166 (345)
T ss_pred hhhhhcccccc-cCCChhhHHHHHHHHHHHhcccchhhcC--------chhcChHHHHHHHHHHHhhcCCCeEeecCCch
Confidence 99999987652 2234556677899999999999999999 77799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+||...+.++...|+++..+-|.|+++||||+ .++.++||||++|++|+|...|+++++.
T Consensus 167 ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999655699999999997 6899999999999999999999999875
No 15
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-53 Score=365.34 Aligned_cols=204 Identities=29% Similarity=0.449 Sum_probs=181.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||.|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.++.. ++|+++||+||++.+.+.+|
T Consensus 21 ~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~s 97 (258)
T COG3638 21 KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLS 97 (258)
T ss_pred eeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcccccH
Confidence 4899999999999999999999999999999999994 8999999988754 37889999999999999999
Q ss_pred HHHHHHHHHHhcCch------hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 77 VYEHLYFMALLKLDR------RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 77 v~e~l~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
|.+|+..+..-+... ..+ .+....+.++|+++|+.+.+..+ ...|||||+|||+|||||+++|++
T Consensus 98 v~~NVl~grl~~~s~~~slfglfs-k~dk~~Al~aLervgi~~~A~qr--------a~~LSGGQQQRVaIARaL~Q~pki 168 (258)
T COG3638 98 VLENVLLGRLGYTSTWRSLFGLFS-KEDKAQALDALERVGILDKAYQR--------ASTLSGGQQQRVAIARALVQQPKI 168 (258)
T ss_pred HHHHHHhhhcccchHHHHHhCCCC-HHHHHHHHHHHHHcCcHHHHHHH--------hccCCcchhHHHHHHHHHhcCCCE
Confidence 999999875332211 112 23345678899999999998888 566999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|.|||+++|||.++.++|+.|++++++.|.|||++.|+. +.+.++|||++-|++|+++|+|++.++-+
T Consensus 169 ILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 9999999999999999999999999888999999999997 57899999999999999999999987543
No 16
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-52 Score=366.22 Aligned_cols=201 Identities=31% Similarity=0.500 Sum_probs=174.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-ccccEEEEccCC---CCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-FRSACGFMYQHD---LFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-~~~~ig~v~Q~~---~~~~~lTv~e 79 (290)
.||||++++|++++|+||||||||||+|+|+|+++|. +|+|.++|++.... -+..||||||.. .-|| +||+|
T Consensus 21 ~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d 96 (254)
T COG1121 21 EDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKD 96 (254)
T ss_pred eccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHH
Confidence 5899999999999999999999999999999999994 89999999987653 246799999953 3344 69999
Q ss_pred HHHHHHHhcCc--hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLD--RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
.+.++...+.. ... ..+..+.+.++|+.+|+.+.+++++++ |||||+|||.|||||+++|++|+|||||
T Consensus 97 ~V~~g~~~~~g~~~~~-~~~d~~~v~~aL~~Vgm~~~~~r~i~~--------LSGGQ~QRV~lARAL~~~p~lllLDEP~ 167 (254)
T COG1121 97 VVLLGRYGKKGWFRRL-NKKDKEKVDEALERVGMEDLRDRQIGE--------LSGGQKQRVLLARALAQNPDLLLLDEPF 167 (254)
T ss_pred HHHccCcccccccccc-cHHHHHHHHHHHHHcCchhhhCCcccc--------cCcHHHHHHHHHHHhccCCCEEEecCCc
Confidence 99987433221 111 223357789999999999999999665 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|+|+.++..|+++|++++++ |+||++||||+ ..+..+||+|+.| ++++++.|+++++++
T Consensus 168 ~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL-~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 168 TGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDL-GLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred ccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCc-HHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 999999999999999999666 99999999998 4799999999999 578899999998764
No 17
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-52 Score=355.51 Aligned_cols=205 Identities=25% Similarity=0.399 Sum_probs=180.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD--DCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~--~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.+||+.|.+++++|+||||||||||||++++.+... ..+.+|+|.++|+++.. .+|++||+|||.|.-|| +
T Consensus 24 ~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~ 102 (253)
T COG1117 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-M 102 (253)
T ss_pred ccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-c
Confidence 489999999999999999999999999999987653 34578999999999864 47999999999999999 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|++||++|+.+++.... ....+.++..|+...|++.-..++..+ +.+||||||||++|||||+.+|+||||||
T Consensus 103 SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s----a~~LSGGQQQRLcIARalAv~PeVlLmDE 175 (253)
T COG1117 103 SIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS----ALGLSGGQQQRLCIARALAVKPEVLLMDE 175 (253)
T ss_pred hHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC----ccCCChhHHHHHHHHHHHhcCCcEEEecC
Confidence 99999999998875432 445577888999999876554444443 56799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+|||.+..+|-+++.+++ + ..|||+|||++ ..+.+.+|+..++..|+++++|++++++
T Consensus 176 PtSALDPIsT~kIEeLi~eLk-~-~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 176 PTSALDPISTLKIEELITELK-K-KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred cccccCchhHHHHHHHHHHHH-h-ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999994 3 68999999998 5899999999999999999999999765
No 18
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-52 Score=350.13 Aligned_cols=200 Identities=27% Similarity=0.425 Sum_probs=183.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||+++.||+++|+|||||||||+|++|++++.|+ +|.|+++|.+... ..|++||.++.+..+|..||++||
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEn 95 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAREN 95 (245)
T ss_pred hheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHH
Confidence 4899999999999999999999999999999999995 8999999998754 478999999988899999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
|.|++.++.. ...+..++++++.+.++|.+++|+++++ +|.||||||+|||||+++|++++|||||+||
T Consensus 96 l~~Fa~L~~l---~~~~~kari~~l~k~l~l~~~~~rRv~~--------~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 96 LKYFARLNGL---SRKEIKARIAELSKRLQLLEYLDRRVGE--------FSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHhhh---hhhHHHHHHHHHHHHhChHHHHHHHHhh--------hchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 9999988754 3444567788999999999999999655 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|..++..+.+.++++ ++.|++||++||.+ .++..+||+++++++|++++.|+++.+.
T Consensus 165 Di~~~r~~~dfi~q~-k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 165 DIRTRRKFHDFIKQL-KNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALD 221 (245)
T ss_pred cHHHHHHHHHHHHHh-hcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHH
Confidence 999999999999999 55699999999997 5899999999999999999999998764
No 19
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-51 Score=381.95 Aligned_cols=201 Identities=21% Similarity=0.339 Sum_probs=180.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..++.||||||++.+||++||+||+
T Consensus 21 ~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (356)
T PRK11650 21 KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENM 97 (356)
T ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHH
Confidence 3799999999999999999999999999999999994 8999999999854 2357899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 98 ~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD 166 (356)
T PRK11650 98 AYGLKIRG---MPKAEIEERVAEAARILELEPLLDRK--------PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166 (356)
T ss_pred HhHHhhcC---CCHHHHHHHHHHHHHHcCChhHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99865432 12333446688999999999999998 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+.+.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 167 ~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 167 AKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999665699999999997 5899999999999999999999999875
No 20
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-51 Score=362.25 Aligned_cols=202 Identities=25% Similarity=0.358 Sum_probs=180.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC-CCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD-LFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~-~~~~~lTv 77 (290)
+++|+.+++|+.++|+||||||||||+++++|+++|. +|.|.++|.++.. .+++++|||||++ ..+..-||
T Consensus 21 ~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV 97 (235)
T COG1122 21 KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTV 97 (235)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcH
Confidence 4899999999999999999999999999999999994 7999999998762 4789999999995 44555699
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
.+.++|+...... +.++..+++.++++.+|+.+.+++. +..|||||||||+||.+|+++|++|||||||
T Consensus 98 ~~evafg~~n~g~---~~~e~~~rv~~~l~~vgl~~~~~r~--------p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 98 EDEVAFGLENLGL---PREEIEERVAEALELVGLEELLDRP--------PFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred HHHHhhchhhcCC---CHHHHHHHHHHHHHHcCchhhccCC--------ccccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence 9999999875432 3334667889999999999999998 5569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||+.++..+++++++++.+.|+|||++|||+ +.+..+|||+++|++|+++++|+|.+++.
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999666689999999997 58999999999999999999999987764
No 21
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.3e-50 Score=378.10 Aligned_cols=201 Identities=24% Similarity=0.399 Sum_probs=179.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ..++.|||+||+..+++.+|
T Consensus 22 ~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 5899999999999999999999999999999999994 8999999999853 14678999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|...... ....+..+++.++++.+||.+..+++ +.+|||||||||+|||||+.+|++||||||
T Consensus 99 v~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~--------~~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 99 VFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSY--------PSNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCC--------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 9999998765432 12334455678999999999988888 556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|++||+.++..++++|++++++.|.|||++||++ +.+.++||++++|++|+++..|++++++
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999655689999999997 5788999999999999999999998775
No 22
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.9e-50 Score=372.32 Aligned_cols=201 Identities=32% Similarity=0.415 Sum_probs=178.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.. ..++.+||+||++.+++.+||+||
T Consensus 24 ~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~ 100 (306)
T PRK13537 24 DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVREN 100 (306)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHH
Confidence 4899999999999999999999999999999999994 8999999999854 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.|....+.. ...+..+++.++++.++|.+..+++ ++.||||||||++||+||+++|++|||||||+||
T Consensus 101 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gL 169 (306)
T PRK13537 101 LLVFGRYFGL---SAAAARALVPPLLEFAKLENKADAK--------VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGL 169 (306)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHcCCchHhcCc--------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCC
Confidence 9987655422 2222344578899999999888888 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..++++|++++ ++|+|||++||++ .++.++||+|++|++|++++.|+++++..
T Consensus 170 D~~~~~~l~~~l~~l~-~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 170 DPQARHLMWERLRSLL-ARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999994 4589999999997 58999999999999999999999997753
No 23
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.5e-51 Score=341.66 Aligned_cols=200 Identities=27% Similarity=0.424 Sum_probs=180.1
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
..+++|..||++||+||||||||||||+|+|+..|. +|+|+|||++.+. -..+-++++||+.++|..+||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 467889999999999999999999999999999994 8999999999865 35677999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
++..-.. +.. ...+++++.++..+||..+.++. +.+|||||||||+|||+|+++-+|||||||+|+|||
T Consensus 94 LGl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RL--------P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP 162 (231)
T COG3840 94 LGLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRL--------PGELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162 (231)
T ss_pred ccCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhC--------ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCH
Confidence 8764221 122 23446688999999999999999 556999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.-+.+++.++.+++.+++.|+++|||++ +++.+++|+++++++|+|.+.|+..+.+
T Consensus 163 ~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 163 ALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999998 5899999999999999999999998654
No 24
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.9e-50 Score=378.76 Aligned_cols=202 Identities=25% Similarity=0.390 Sum_probs=181.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..++.+|||||+..+||.+||+||+
T Consensus 21 ~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (353)
T TIGR03265 21 KDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI 97 (353)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence 3799999999999999999999999999999999994 8999999999864 2457899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 98 ~~~~~~~~---~~~~~~~~~~~~~l~~l~L~~~~~~~--------~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD 166 (353)
T TIGR03265 98 AYGLKNRG---MGRAEVAERVAELLDLVGLPGSERKY--------PGQLSGGQQQRVALARALATSPGLLLLDEPLSALD 166 (353)
T ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHcCCCchhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99865432 12334456788999999999999988 56699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+.++.++.+.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|++++++.
T Consensus 167 ~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 167 ARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999666689999999997 58899999999999999999999997753
No 25
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-50 Score=377.55 Aligned_cols=201 Identities=25% Similarity=0.349 Sum_probs=180.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..++.+|||||++.+||++||+||+
T Consensus 23 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi 99 (351)
T PRK11432 23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENV 99 (351)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999995 8999999999864 2457899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..++. +..|||||||||+|||||+.+|++|||||||++||
T Consensus 100 ~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~--------~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD 168 (351)
T PRK11432 100 GYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRY--------VDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168 (351)
T ss_pred HHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 99875432 12334456788999999999988888 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+..+.++.+.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 169 ~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 169 ANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999665689999999997 5889999999999999999999999875
No 26
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-50 Score=340.37 Aligned_cols=195 Identities=29% Similarity=0.384 Sum_probs=177.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||.+++||++-|+||||||||||||+|.+..+|+ +|+|+++|.++.. .+|++||+||||..+.+..|
T Consensus 19 ~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~t 95 (223)
T COG2884 19 RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRT 95 (223)
T ss_pred hCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccch
Confidence 5899999999999999999999999999999999994 8999999999864 37899999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||++|....... +..+..+++.++|+.+||.+.++.. |.+|||||||||+||||++.+|++||.|||
T Consensus 96 vyeNVA~pL~v~G~---~~~~i~~rV~~~L~~VgL~~k~~~l--------P~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 96 VYENVALPLRVIGK---PPREIRRRVSEVLDLVGLKHKARAL--------PSQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred HhhhhhhhhhccCC---CHHHHHHHHHHHHHHhccchhhhcC--------ccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 99999998876543 3345567889999999999999888 677999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
|.+|||....+|++++.++ ...|+||+++|||. ..+..+-.|++.+++|+++.+..
T Consensus 165 TGNLDp~~s~~im~lfeei-nr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEI-NRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCCCChHHHHHHHHHHHHH-hhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999 56799999999996 56777889999999999987643
No 27
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.6e-50 Score=377.25 Aligned_cols=201 Identities=26% Similarity=0.394 Sum_probs=180.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cc----cccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KF----RSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~----~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. .+ ++.+|||||++.++|.+
T Consensus 10 ~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred EeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 5899999999999999999999999999999999994 8999999999864 23 67899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.|+..... ....+..+++.++++.+||.++.+++ +.+|||||||||+|||||+.+|++|||||
T Consensus 87 TV~eNi~~~~~~~~---~~~~~~~~~~~~~l~~vgL~~~~~~~--------p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLG---WPEQERKEKALELLKLVGLEEYEHRY--------PDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCchhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999865432 12334456788999999999888888 55699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||++||+.++..+.+.|.+++++.|+|||++|||+ .++.++||+|++|++|+++..|++++++
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999655689999999997 5789999999999999999999998875
No 28
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-50 Score=356.04 Aligned_cols=202 Identities=29% Similarity=0.455 Sum_probs=175.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+|
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT 93 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence 4899999999999999999999999999999999984 8999999998743 24678999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|.||+.++...... .......+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++||||||
T Consensus 94 v~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~ia~al~~~p~llllDEP 163 (235)
T cd03261 94 VFENVAFPLREHTR--LSEEEIREIVLEKLEAVGLRGAEDLY--------PAELSGGMKKRVALARALALDPELLLYDEP 163 (235)
T ss_pred HHHHHHHHHhhccC--CCHHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 99999986543211 12223345678899999998888887 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++.|++++++.|+|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 9999999999999999999554589999999997 4788899999999999999999988653
No 29
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-50 Score=352.21 Aligned_cols=199 Identities=29% Similarity=0.389 Sum_probs=176.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC--CCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD--LFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~--~~~~~lT 76 (290)
.||||++.+||+++|+|+||||||||.++|+|+.+|+ +|+|.++|+++.. .+++.|-+||||+ .+.|..|
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 4899999999999999999999999999999999995 8999999988765 3578899999996 6789999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|++.|.-........ .. .+++.++++.+||. .+++++ +.+|||||+|||+|||||+.+|++|||||
T Consensus 101 v~~~l~Epl~~~~~~---~~--~~~i~~~L~~VgL~~~~l~R~--------P~eLSGGQ~QRiaIARAL~~~PklLIlDE 167 (252)
T COG1124 101 VGRILSEPLRPHGLS---KS--QQRIAELLDQVGLPPSFLDRR--------PHELSGGQRQRIAIARALIPEPKLLILDE 167 (252)
T ss_pred HHHHHhhhhccCCcc---HH--HHHHHHHHHHcCCCHHHHhcC--------chhcChhHHHHHHHHHHhccCCCEEEecC
Confidence 999988766543221 11 23378999999996 467777 66699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+||+..+.+|+++|.+++++.+.|+|++|||. ..+..+||||++|++|+++..++..+++
T Consensus 168 ptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 168 PTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred chhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999888899999999997 5789999999999999999999999775
No 30
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=5.5e-50 Score=368.68 Aligned_cols=201 Identities=28% Similarity=0.338 Sum_probs=177.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+||+||++.+++.+||+||
T Consensus 10 ~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 4899999999999999999999999999999999994 8999999998753 346789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ......+++.++++.++|.+..+++ +..|||||||||+||+||+.+|++|||||||+||
T Consensus 87 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 87 LEMMGRLYGL---PKDEAEERAEELLELFELGEAADRP--------VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHcCChhHhCCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9987654321 1222334678899999999888888 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..++++|++++ +.|.|||++||++ .++.++||++++|++|++++.|+++++..
T Consensus 156 D~~~~~~l~~~l~~~~-~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 156 DPRTRRAIWDYIRALK-EEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999995 4589999999997 57889999999999999999999987654
No 31
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6.4e-50 Score=376.05 Aligned_cols=201 Identities=24% Similarity=0.383 Sum_probs=179.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCc--cEEEECCEecCc--cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIID--GDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~--G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++.+||+++|+|||||||||||++|+|+.+|+ + |+|.++|+++.. ..++.+|||||++.+||.+||+|
T Consensus 22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~e 98 (362)
T TIGR03258 22 DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVED 98 (362)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHH
Confidence 4799999999999999999999999999999999994 7 999999999854 23568999999999999999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.|+...+. ....+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++
T Consensus 99 nl~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~--------~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~ 167 (362)
T TIGR03258 99 NVAFGLRAQK---MPKADIAERVADALKLVGLGDAAAHL--------PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167 (362)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHhcCCCchhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 9999875432 22334445688999999999999998 556999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcC-CcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQR-KKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~-g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+..+.++.+.|+++.++. |.|+|++|||+ .++..+||+|++|++|+++..|+++++.
T Consensus 168 LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 168 LDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999996554 89999999997 5889999999999999999999999875
No 32
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=8.2e-50 Score=374.46 Aligned_cols=204 Identities=27% Similarity=0.430 Sum_probs=179.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. ..++.+||+||++.++|.+||+||+
T Consensus 19 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni 95 (353)
T PRK10851 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI 95 (353)
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHH
Confidence 4799999999999999999999999999999999994 8999999999854 2356799999999999999999999
Q ss_pred HHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.|+...... ......+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||+||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~--------~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~L 167 (353)
T PRK10851 96 AFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY--------PAQLSGGQKQRVALARALAVEPQILLLDEPFGAL 167 (353)
T ss_pred HhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 997653210 0112333455788999999999988888 5569999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+.++..+.+.|++++++.|+|+|++|||+ .++..+||++++|++|+++..|++++++
T Consensus 168 D~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 168 DAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999665689999999997 5889999999999999999999999875
No 33
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.6e-50 Score=426.92 Aligned_cols=272 Identities=27% Similarity=0.381 Sum_probs=227.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD-CIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~-~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+|+.+++||+++|+||||||||||||+|+|+.++. ...+|+|.+||+++.. .+++.++|++|++.+++.+||+|
T Consensus 78 ~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E 157 (1394)
T TIGR00956 78 KPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGE 157 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHH
Confidence 5899999999999999999999999999999987321 1158999999998753 35667999999999999999999
Q ss_pred HHHHHHHhcCch----hhhHHHHHH-HHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 80 HLYFMALLKLDR----RVKAYQRIA-LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 80 ~l~~~~~~~~~~----~~~~~~~~~-~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
++.|++.++.+. .....+..+ .++.+++.+||.+.+++++|++. +++|||||||||+||++|+.+|++++||
T Consensus 158 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~---~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 158 TLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDF---VRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCc---CCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 999987765321 112222222 34678999999999999988753 4679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHHCCCCCCCCCC
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYN 234 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~~~~~~ 234 (290)
|||+|||+.++.++++.|++++++.|+|||+++||+..++.++||++++|++|++++.|+++++.++|++.|++||.+.+
T Consensus 235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n 314 (1394)
T TIGR00956 235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQT 314 (1394)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999999965568999999999867899999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCC-----chhhhHHHHHHHHHHHhhhchhHHhHhhhhh
Q psy2520 235 PADFLIKSLAVTT-----NDELSSRRRLKRICDEFSVCDFAKEVDLEIN 278 (290)
Q Consensus 235 ~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 278 (290)
++||+.+..+... +.+.......+.+++.|+.|+.++++..+++
T Consensus 315 ~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 363 (1394)
T TIGR00956 315 TADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEID 363 (1394)
T ss_pred hHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999998765321 1111112346788899999998877666654
No 34
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=9.6e-50 Score=376.27 Aligned_cols=201 Identities=22% Similarity=0.345 Sum_probs=179.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.+|||||++.+||.+||+||+
T Consensus 31 ~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi 107 (375)
T PRK09452 31 SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENV 107 (375)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHH
Confidence 3799999999999999999999999999999999994 8999999999854 2457899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 108 ~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~--------p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD 176 (375)
T PRK09452 108 AFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRK--------PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176 (375)
T ss_pred HHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCC
Confidence 99865432 12233445678999999999999998 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+..+..+.+.|+++.++.|.|+|++|||+ .++..++|++++|++|+++..|++++++
T Consensus 177 ~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 177 YKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999666699999999997 5889999999999999999999998875
No 35
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=9.4e-50 Score=426.63 Aligned_cols=272 Identities=26% Similarity=0.431 Sum_probs=228.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+||.++||++++|+||||||||||||+|+|+++|+...+|+|.+||+++.. ..++.++||+|++.+++.+||+|++.
T Consensus 182 ~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~ 261 (1470)
T PLN03140 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLD 261 (1470)
T ss_pred cCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHH
Confidence 58999999999999999999999999999999998854458999999998854 24678999999999999999999999
Q ss_pred HHHHhcCch-------hhhHHHH------------------------HHHHHHHHHHcCCCCccCcccCCcCCCCCCCCC
Q psy2520 83 FMALLKLDR-------RVKAYQR------------------------IALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131 (290)
Q Consensus 83 ~~~~~~~~~-------~~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LS 131 (290)
|++.++... .....++ ...++.+++.+||.+++++.+|+.. +++||
T Consensus 262 f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~---~rglS 338 (1470)
T PLN03140 262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM---IRGIS 338 (1470)
T ss_pred HHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc---ccCCC
Confidence 987654211 0001100 1135678999999999999888754 46799
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 132 gGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
|||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|+|+++||+..+++++||+|++|++|++++
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy 418 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVY 418 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEE
Confidence 99999999999999999999999999999999999999999999665689999999998778999999999999999999
Q ss_pred EcCHHHHHHHHHHCCCCCCCCCChHHHHHHhhcCCCc-hhhhHH------HHHHHHHHHhhhchhHHhHhhhhh
Q psy2520 212 IGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTN-DELSSR------RRLKRICDEFSVCDFAKEVDLEIN 278 (290)
Q Consensus 212 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~ 278 (290)
.|+++++.++|++.|++||.+.+++||+.++.+.... .....+ .....+++.|+.|+.+++...+++
T Consensus 419 ~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~ 492 (1470)
T PLN03140 419 QGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELS 492 (1470)
T ss_pred eCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHh
Confidence 9999999999999999999999999999988753211 100000 235678999999988877665543
No 36
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.6e-49 Score=422.52 Aligned_cols=261 Identities=33% Similarity=0.585 Sum_probs=221.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|||+++++|+++||+|||||||||||++|+|+.++...++|+|.+||+++...+++.+|||+|++.+++.+||+||+.|
T Consensus 780 ~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~ 859 (1394)
T TIGR00956 780 NNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRF 859 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHH
Confidence 48999999999999999999999999999999987422247999999999865677889999999989999999999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC-eEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA-LLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~-llllDEPtsgLD~ 162 (290)
++.++.+...+..++.++++++++.++|.+++|+.++++ ..+|||||||||+||++|+.+|+ +|||||||+|||+
T Consensus 860 ~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~----~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~ 935 (1394)
T TIGR00956 860 SAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP----GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDS 935 (1394)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC----CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCH
Confidence 887664433334445567899999999999999998753 23599999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCC-eEEEEcCH----HHHHHHHHHCCC-CCCCCCChH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS-RTAFIGSK----DAALAFLESQGY-PCPYGYNPA 236 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G-~i~~~g~~----~~~~~~~~~~g~-~~~~~~~~~ 236 (290)
.++..+++.|++++ ++|+|||+++||+...+.+.||++++|++| ++++.|++ .++.++|+..|+ +||...||+
T Consensus 936 ~~~~~i~~~L~~la-~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpA 1014 (1394)
T TIGR00956 936 QTAWSICKLMRKLA-DHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPA 1014 (1394)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHH
Confidence 99999999999995 458999999999975567889999999987 99999997 567899999996 999999999
Q ss_pred HHHHHhhcCCCchhhhHHHHHHHHHHHhhhchhHHhHh
Q psy2520 237 DFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVD 274 (290)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 274 (290)
||+++.+....... ..+.+.+.|+.|+.++.+.
T Consensus 1015 d~~ldvi~~~~~~~-----~~~~~~~~~~~s~~~~~~~ 1047 (1394)
T TIGR00956 1015 EWMLEVIGAAPGAH-----ANQDYHEVWRNSSEYQAVK 1047 (1394)
T ss_pred HHHHHHhhcccccc-----hhccHHHHHhcCHHHHHHH
Confidence 99999876433221 1234567777777665543
No 37
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.5e-49 Score=369.45 Aligned_cols=201 Identities=33% Similarity=0.415 Sum_probs=178.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.+||+||++.+++.+||+||
T Consensus 58 ~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~ 134 (340)
T PRK13536 58 NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVREN 134 (340)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHH
Confidence 4899999999999999999999999999999999995 8999999999754 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ...+..+.+.++++.++|.+..++++ ..|||||||||+||+||+++|++|||||||+||
T Consensus 135 l~~~~~~~~~---~~~~~~~~~~~ll~~~~L~~~~~~~~--------~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gL 203 (340)
T PRK13536 135 LLVFGRYFGM---STREIEAVIPSLLEFARLESKADARV--------SDLSGGMKRRLTLARALINDPQLLILDEPTTGL 203 (340)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHcCCchhhCCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 9986654321 12223345678999999999899884 459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..++++|+++++ .|+|||++||++ .++.++||+|++|++|++++.|+++++..
T Consensus 204 D~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 204 DPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999954 599999999997 58899999999999999999999998754
No 38
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-49 Score=374.15 Aligned_cols=201 Identities=24% Similarity=0.359 Sum_probs=180.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|+++|+++.. ..++.+||+||++.+||.+||+||+
T Consensus 36 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi 112 (377)
T PRK11607 36 DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNI 112 (377)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHH
Confidence 4799999999999999999999999999999999995 8999999998854 3467899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 113 ~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~--------~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD 181 (377)
T PRK11607 113 AFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRK--------PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181 (377)
T ss_pred HHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99865432 12334456688999999999998988 56699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+..+..+.+.|+++.++.|.|+|++|||+ .++..++|++++|++|+++..|+++++.
T Consensus 182 ~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 182 KKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999998666689999999997 5889999999999999999999999875
No 39
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.4e-51 Score=344.21 Aligned_cols=203 Identities=26% Similarity=0.441 Sum_probs=184.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.+|||.+++||+++++|||||||||.+.++.|+.+|+ +|+|+++|.+++. ..|..|||+||++..|..+||+
T Consensus 21 ~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~ 97 (243)
T COG1137 21 NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVE 97 (243)
T ss_pred eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHH
Confidence 4799999999999999999999999999999999995 8999999999976 3566799999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+......+... ....++..+++++|+.|++.+.++++ ..+||||||+|+.|||||+.+|+++|||||++
T Consensus 98 dNi~~vlE~~~~d-~~~~~~~~~l~~LL~ef~i~hlr~~~--------a~sLSGGERRR~EIARaLa~~P~fiLLDEPFA 168 (243)
T COG1137 98 DNIMAVLEIREKD-LKKAERKEELDALLEEFHITHLRDSK--------AYSLSGGERRRVEIARALAANPKFILLDEPFA 168 (243)
T ss_pred HHHHHHHhhhhcc-hhHHHHHHHHHHHHHHhchHHHhcCc--------ccccccchHHHHHHHHHHhcCCCEEEecCCcc
Confidence 9999887765422 12334556688999999999999998 66799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+||.+..+|.++++.+ +++|..|+++-|+.. +...+|||.+++++|+++++|+|+++..
T Consensus 169 GVDPiaV~dIq~iI~~L-~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 169 GVDPIAVIDIQRIIKHL-KDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred CCCchhHHHHHHHHHHH-HhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999 567999999999975 8899999999999999999999998763
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-49 Score=345.49 Aligned_cols=195 Identities=30% Similarity=0.445 Sum_probs=169.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. ..++.++|+||++.+++.+|++||+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 93 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENI 93 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHH
Confidence 5899999999999999999999999999999999984 8999999998753 2456799999998899999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+....... ......+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 94 ~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 94 AFGLKLRGV---PKAEIRARVRELLELVGLEGLLNRY--------PHELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HhHHHHcCC---CHHHHHHHHHHHHHHcCChhhhhcC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 886543211 1222334578899999998888887 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
+.++..++++|++++++.|.|||++||++ .++.++||++++|++|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 163 AKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999998554589999999997 5788999999999999998754
No 41
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-49 Score=372.04 Aligned_cols=201 Identities=25% Similarity=0.374 Sum_probs=178.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.+||+||++.+++.+||+||+
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni 96 (369)
T PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENM 96 (369)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHH
Confidence 4899999999999999999999999999999999994 8999999998854 2356799999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+.. ...+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 97 ~~~~~~~~~---~~~~~~~~~~~~l~~lgL~~~~~~~--------~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD 165 (369)
T PRK11000 97 SFGLKLAGA---KKEEINQRVNQVAEVLQLAHLLDRK--------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (369)
T ss_pred HhHHhhcCC---CHHHHHHHHHHHHHHcCChhhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 997654321 2233345678999999999888888 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+.+.|+++.++.|.|+|++||++ .++..+||++++|++|+++..|++++++
T Consensus 166 ~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 166 AALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999655689999999997 5788999999999999999999998775
No 42
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-50 Score=358.93 Aligned_cols=201 Identities=28% Similarity=0.389 Sum_probs=186.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------c-ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------K-FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~-~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||+++.|||+.|+|-||||||||+++++++.+|+ +|+|+++|+++.. . .++++++|||+..++|+.
T Consensus 45 ~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred ccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 5899999999999999999999999999999999994 8999999999854 2 357899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||.||..|+...+. +.+.++.+++.++++.+||..+.+++ +.+|||||||||.|||||+.+|+|||+||
T Consensus 122 tVl~Nv~fGLev~G---v~~~er~~~a~~~l~~VgL~~~~~~y--------p~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 122 TVLENVAFGLEVQG---VPKAEREERALEALELVGLEGYADKY--------PNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred hHhhhhhcceeecC---CCHHHHHHHHHHHHHHcCchhhhhcC--------cccccchHHHHHHHHHHHccCCCEEEecC
Confidence 99999999988765 35567778899999999999999999 56699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|+|||--+.++.+.|.++.++-.+|||++|||+ +|+.++.|||.+|++|+++..|+|++++
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhccceEEEecCCeEEEeCCHHHHH
Confidence 99999999999999999999777789999999998 5899999999999999999999999986
No 43
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-48 Score=355.63 Aligned_cols=213 Identities=23% Similarity=0.390 Sum_probs=178.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCC-CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDL-FSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~-~~~~lT 76 (290)
.||||+|.+||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.+||+||++. .+...|
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 24 DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 4899999999999999999999999999999999994 8999999999853 24578999999863 334579
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC--CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM--NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
|+||+.|+..... ....+..+++.++++.+||. +..++. +..||||||||++|||||+.+|++||||
T Consensus 101 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 101 IEKDIAFGPINLG---LSEEEIENRVKRAMNIVGLDYEDYKDKS--------PFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred HHHHHHhHHHHCC---CCHHHHHHHHHHHHHHcCCCchhhccCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999998754322 12233445678999999997 667777 5569999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCCCC
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCPY 231 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~~~ 231 (290)
|||+|||+.++..++++|++++++.|.|||++||++ .++..+|||+++|++|++++.|++++++. .+...++..|.
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 170 EPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999999999999655589999999997 57888999999999999999999998754 23344555443
No 44
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-49 Score=345.66 Aligned_cols=199 Identities=28% Similarity=0.406 Sum_probs=173.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+++.++|+||++.+++.+||+||
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN 93 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHH
Confidence 4799999999999999999999999999999999984 8999999988743 345679999999989999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ...+..+.+.++++.+++.+..+++ +.+|||||||||+||+||+.+|+++||||||+||
T Consensus 94 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qr~~la~al~~~p~llllDEPt~~L 162 (220)
T cd03265 94 LYIHARLYGV---PGAERRERIDELLDFVGLLEAADRL--------VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGL 162 (220)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 9987544321 1222334578899999998888888 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
|+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|+++..|++++
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 163 DPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 999999999999999554589999999997 57888999999999999999988765
No 45
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-50 Score=347.47 Aligned_cols=204 Identities=27% Similarity=0.382 Sum_probs=182.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.||||++++||+++||||||||||||+|+|+|+++|+ +|+|.++|++++. ..+..|+--||...+|++|||.
T Consensus 21 ~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVl 97 (250)
T COG0411 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVL 97 (250)
T ss_pred eceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHH
Confidence 5899999999999999999999999999999999995 7999999999975 2466799999999999999999
Q ss_pred HHHHHHHHhcC--------ch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 79 EHLYFMALLKL--------DR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 79 e~l~~~~~~~~--------~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
||+..+...+. +. .....+..+++.++|+.+||.+.++++ ..+||+|||+|+.|||||+.+|+
T Consensus 98 ENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~--------A~~LsyG~qR~LEIArALa~~P~ 169 (250)
T COG0411 98 ENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRP--------AGNLSYGQQRRLEIARALATQPK 169 (250)
T ss_pred HHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcch--------hhcCChhHhHHHHHHHHHhcCCC
Confidence 99998755321 11 113445567789999999999999999 55599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+||||||.+||.+....++.+.|++++++.|.||++|.||+ ..+..+||||++|+.|+++++|+|+++.
T Consensus 170 lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 170 LLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred EEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 99999999999999999999999999665689999999998 5899999999999999999999999875
No 46
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-49 Score=367.03 Aligned_cols=201 Identities=24% Similarity=0.416 Sum_probs=177.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+||+||++.+++.+|
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~t 98 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCc
Confidence 5899999999999999999999999999999999994 8999999998853 13578999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|.||+.+....... ...+..+++.++++.+||.+..+++ +.+|||||||||+|||||+.+|++||||||
T Consensus 99 v~eni~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LSgGq~qRv~lAraL~~~p~iLlLDEP 167 (343)
T PRK11153 99 VFDNVALPLELAGT---PKAEIKARVTELLELVGLSDKADRY--------PAQLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchhhhCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999987654321 2223345678899999999888888 556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..++++|++++++.|+|||++||++ .++.++||++++|++|++++.|++++++
T Consensus 168 ts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 168 TSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999655689999999997 5788899999999999999999988764
No 47
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-49 Score=348.66 Aligned_cols=204 Identities=28% Similarity=0.421 Sum_probs=174.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.++|++|++.+++.+||.||+
T Consensus 19 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 95 (239)
T cd03296 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV 95 (239)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHH
Confidence 4899999999999999999999999999999999984 8999999998753 2346799999999999999999999
Q ss_pred HHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.++...... .........+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEP~~~L 167 (239)
T cd03296 96 AFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY--------PAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 167 (239)
T ss_pred hhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 986543211 0001122334577899999998878877 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+.++..+.++|++++++.|+|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 168 D~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 168 DAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999654589999999997 4788899999999999999999988653
No 48
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.4e-49 Score=360.66 Aligned_cols=201 Identities=34% Similarity=0.449 Sum_probs=175.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.+||+||++.+++.+||+||
T Consensus 21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 97 (303)
T TIGR01288 21 NDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVREN 97 (303)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHH
Confidence 5899999999999999999999999999999999984 8999999998743 246789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ......+.+.++++.+++.+..+++ +..|||||||||+||+||+.+|++|||||||+||
T Consensus 98 l~~~~~~~~~---~~~~~~~~~~~ll~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 166 (303)
T TIGR01288 98 LLVFGRYFGM---STREIEAVIPSLLEFARLESKADVR--------VALLSGGMKRRLTLARALINDPQLLILDEPTTGL 166 (303)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHCCChhHhcCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9875543321 1222234567899999999888888 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..++++|+++++ .|.|||++||++ .++..+||++++|++|+++..|+++++..
T Consensus 167 D~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 167 DPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999954 589999999997 57889999999999999999999987653
No 49
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.1e-48 Score=347.24 Aligned_cols=203 Identities=29% Similarity=0.426 Sum_probs=174.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. . .+..++|+||++.+++.+||+
T Consensus 17 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (236)
T cd03219 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93 (236)
T ss_pred cCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence 4799999999999999999999999999999999984 8999999998753 1 245699999999999999999
Q ss_pred HHHHHHHHhcCchhh-------hHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 79 EHLYFMALLKLDRRV-------KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 79 e~l~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+.++......... ......+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP--------AGELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999987543211100 1122345678899999998888887 4559999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..++++|+++++ .|+|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 99999999999999999999999954 689999999997 5788899999999999999999988653
No 50
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-48 Score=343.43 Aligned_cols=196 Identities=29% Similarity=0.422 Sum_probs=171.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .++.++|+||++.+++.+||+||+.+
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG-PGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc-ccCcEEEEecccccccCCCHHHHHHH
Confidence 4899999999999999999999999999999999884 8999999998753 45679999999988998999999998
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....+.. ......+.+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+|||+.
T Consensus 97 ~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~ 165 (220)
T cd03293 97 GLELQGV---PKAEARERAEELLELVGLSGFENAY--------PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165 (220)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHH
Confidence 7543321 1222345678899999998888877 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe--CCeEEEEcCH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAFIGSK 215 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~--~G~i~~~g~~ 215 (290)
++..+++.|++++++.|.|||++||++ .++..+||++++|+ +|+++..++.
T Consensus 166 ~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 166 TREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999998555589999999997 47888999999999 7999988764
No 51
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.9e-48 Score=416.61 Aligned_cols=264 Identities=31% Similarity=0.568 Sum_probs=222.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|||++++||++++|+|||||||||||++|+|+.++. ..+|+|.+||.+... .+++.+|||+|++.+++.+||+|++.
T Consensus 897 ~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~ 975 (1470)
T PLN03140 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLI 975 (1470)
T ss_pred eCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHH
Confidence 4899999999999999999999999999999997642 258999999998754 35678999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
|++.++.+...+..++.+.++++++.++|.+.+++.+|.+. +++|||||||||+||++|+.+|++|||||||+|||+
T Consensus 976 ~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~---~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~ 1052 (1470)
T PLN03140 976 YSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG---VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1052 (1470)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCC---CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 98766543333334455678999999999999999987642 256999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC-CeEEEEcCH----HHHHHHHHHC-CCC-CCCCCCh
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTAFIGSK----DAALAFLESQ-GYP-CPYGYNP 235 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~-G~i~~~g~~----~~~~~~~~~~-g~~-~~~~~~~ 235 (290)
.++..+++.|++++ +.|+|||+++||++.++.+.||++++|++ |++++.|++ .++.+||++. |.+ ||...||
T Consensus 1053 ~~a~~v~~~L~~l~-~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NP 1131 (1470)
T PLN03140 1053 RAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNP 1131 (1470)
T ss_pred HHHHHHHHHHHHHH-HCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCc
Confidence 99999999999995 45899999999997567899999999996 899999996 5788999996 664 9999999
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHHHhhhchhHHhHhhhh
Q psy2520 236 ADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEI 277 (290)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 277 (290)
+||++++.....+. .....+++.|+.|+.++++...+
T Consensus 1132 Ad~~l~v~~~~~~~-----~~~~d~~~~~~~s~~~~~~~~~~ 1168 (1470)
T PLN03140 1132 ATWMLEVSSLAAEV-----KLGIDFAEHYKSSSLYQRNKALV 1168 (1470)
T ss_pred hhhhhhhhcccccc-----cccchHHHHHhccHHHHHHHHHH
Confidence 99999886532211 11235788899999888766544
No 52
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=6.6e-49 Score=344.38 Aligned_cols=190 Identities=28% Similarity=0.418 Sum_probs=165.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+|
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (216)
T TIGR00960 20 DNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT 96 (216)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence 4899999999999999999999999999999999984 8999999998742 14568999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|.||+.+....... ......+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++||||||
T Consensus 97 v~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 97 VYDNVAFPLRIIGV---PPRDANERVSAALEKVGLEGKAHAL--------PMQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999987543321 1122345678899999998888887 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
|+|||+.++..+.+.|++++ +.|.|||++||++ .++..+||++++|++|++
T Consensus 166 t~~LD~~~~~~l~~~l~~~~-~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFN-RRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999995 4589999999997 578889999999999974
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-48 Score=345.30 Aligned_cols=200 Identities=24% Similarity=0.389 Sum_probs=174.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.++|+||++.+++.+|
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 4789999999999999999999999999999999984 7999999998753 13567999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
++||+.+....+.. ........+.++++.+++.+..++. +..|||||||||+|||||+.+|+++|||||
T Consensus 99 ~~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (233)
T cd03258 99 VFENVALPLEIAGV---PKAEIEERVLELLELVGLEDKADAY--------PAQLSGGQKQRVGIARALANNPKVLLCDEA 167 (233)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHCCChhhhhcC--------hhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 99999886543321 1222345678899999998888887 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|+|||+.++..+.+.|++++++.|+|||++||++ .++..+||++++|++|+++..|+++++
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 168 TSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999998555589999999997 578889999999999999999988765
No 54
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-48 Score=352.84 Aligned_cols=212 Identities=21% Similarity=0.342 Sum_probs=179.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCC-CCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHD-LFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~-~~~~~lTv~ 78 (290)
.|+||+|++||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.+||+||++ .+++.+||.
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 24 NDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 4899999999999999999999999999999999994 8999999999853 3567899999996 467778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.|+..... ....+..+++.++++.++|.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 101 eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~ 169 (279)
T PRK13650 101 DDVAFGLENKG---IPHEEMKERVNEALELVGMQDFKERE--------PARLSGGQKQRVAIAGAVAMRPKIIILDEATS 169 (279)
T ss_pred HHHHhhHHhCC---CCHHHHHHHHHHHHHHCCCHhHhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 99998754321 12233345678899999999888888 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCCCC
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCPY 231 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~~~ 231 (290)
|||+.++..+++.|++++++.|+|||++||++. ++ .+||++++|++|+++..|+++++.. .+...++..|.
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 170 MLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHcChHHHHHcCCCCcH
Confidence 999999999999999995555899999999974 56 5899999999999999999987653 34445555443
No 55
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-48 Score=355.63 Aligned_cols=219 Identities=25% Similarity=0.362 Sum_probs=183.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHD--LFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~--~~~~ 73 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.. .+++.+|||||++ .+++
T Consensus 23 ~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 23 FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 4899999999999999999999999999999999994 8999999998741 2467899999986 4555
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.||.||+.|+..... ....+..+++.++++.++|. +..++. +..||||||||++|||+|+.+|++||
T Consensus 100 -~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~~LSgGqkqrvaiA~aL~~~p~ill 167 (288)
T PRK13643 100 -ETVLKDVAFGPQNFG---IPKEKAEKIAAEKLEMVGLADEFWEKS--------PFELSGGQMRRVAIAGILAMEPEVLV 167 (288)
T ss_pred -chHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCChhhccCC--------cccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 699999998764332 12233445678999999996 466777 55699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCC
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPC 229 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~ 229 (290)
|||||+|||+.++..+.++|+++++ .|.|||++||++ .++..+||+|++|++|++++.|++++++. ++...++.+
T Consensus 168 LDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 245 (288)
T PRK13643 168 LDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGV 245 (288)
T ss_pred EECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCC
Confidence 9999999999999999999999954 589999999997 57889999999999999999999998764 455677776
Q ss_pred CCCCChHHHH
Q psy2520 230 PYGYNPADFL 239 (290)
Q Consensus 230 ~~~~~~~~~~ 239 (290)
|........+
T Consensus 246 p~~~~~~~~~ 255 (288)
T PRK13643 246 PKATHFADQL 255 (288)
T ss_pred ChHHHHHHHH
Confidence 6554444444
No 56
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-48 Score=347.73 Aligned_cols=203 Identities=27% Similarity=0.424 Sum_probs=173.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++.+|++++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.++|+||++.+++.+|
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T cd03256 18 KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLS 94 (241)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCc
Confidence 4899999999999999999999999999999999884 7999999998753 24567999999999999999
Q ss_pred HHHHHHHHHHhcC-----chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 77 VYEHLYFMALLKL-----DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 77 v~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|.||+.+...... ..........+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++|
T Consensus 95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 95 VLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR--------ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred HHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999987532110 00001112335577899999998877877 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
||||||+|||+.++..+.+.|++++++.|+|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 999999999999999999999999655589999999997 478889999999999999999998865
No 57
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-48 Score=353.30 Aligned_cols=212 Identities=25% Similarity=0.370 Sum_probs=178.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHD--LFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~--~~~~ 73 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+||+||++ .++
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~- 99 (290)
T PRK13634 24 YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF- 99 (290)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-
Confidence 5899999999999999999999999999999999984 8999999998742 2456799999986 445
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
..||+||+.|+...... ...+..+++.++++.++|. +..++. +..|||||||||+|||||+.+|++||
T Consensus 100 ~~tv~eni~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~~LSgGq~qrv~lAraL~~~P~lll 168 (290)
T PRK13634 100 EETVEKDICFGPMNFGV---SEEDAKQKAREMIELVGLPEELLARS--------PFELSGGQMRRVAIAGVLAMEPEVLV 168 (290)
T ss_pred hhhHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHCCCChhhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 46999999987543221 1222335678899999996 567777 55699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCC
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPC 229 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~ 229 (290)
|||||+|||+.++..++++|++++++.|.|||++||++ .++..+|||+++|++|++++.|++++++. .+...+...
T Consensus 169 lDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 247 (290)
T PRK13634 169 LDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDL 247 (290)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCC
Confidence 99999999999999999999999655689999999997 57889999999999999999999988753 344455554
Q ss_pred CC
Q psy2520 230 PY 231 (290)
Q Consensus 230 ~~ 231 (290)
|.
T Consensus 248 ~~ 249 (290)
T PRK13634 248 PE 249 (290)
T ss_pred CH
Confidence 43
No 58
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.1e-48 Score=343.49 Aligned_cols=200 Identities=26% Similarity=0.411 Sum_probs=173.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. . .++.++|+||++.+++.+||+
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE 93 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence 4899999999999999999999999999999999984 8999999998743 1 245799999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.+....+.. ........+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 94 ~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 162 (232)
T cd03218 94 ENILAVLEIRGL---SKKEREEKLEELLEEFHITHLRKSK--------ASSLSGGERRRVEIARALATNPKFLLLDEPFA 162 (232)
T ss_pred HHHHHHHHhcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 999986543321 1222334577899999998888887 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.++|+++++ .|+|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 163 ~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 163 GVDPIAVQDIQKIIKILKD-RGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred cCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999954 589999999997 4789999999999999999999887653
No 59
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.7e-48 Score=339.67 Aligned_cols=195 Identities=23% Similarity=0.377 Sum_probs=169.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. ..++.++|++|++.+++.+||+||+
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 93 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI 93 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHH
Confidence 5899999999999999999999999999999999984 8999999998753 2345799999999888899999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.++...... ...+..+++.++++.+++.+..++. +.+||||||||++|||||+.+|+++||||||+|||
T Consensus 94 ~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD 162 (213)
T cd03301 94 AFGLKLRKV---PKDEIDERVREVAELLQIEHLLDRK--------PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162 (213)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHcCCHHHHhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 886543221 1223345678899999998888888 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
+.++..+++.|++++.+.|.|||++||++ .++..+||++++|++|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 163 AKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999654589999999997 5788899999999999998765
No 60
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.2e-48 Score=356.84 Aligned_cols=200 Identities=28% Similarity=0.427 Sum_probs=177.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.+||+||++.+++.+||.||
T Consensus 19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~ 95 (301)
T TIGR03522 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREY 95 (301)
T ss_pred EEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHH
Confidence 4899999999999999999999999999999999994 8999999998754 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ...+..+++.++++.+||.+..+++ +..|||||||||+||+||+.+|++|||||||+||
T Consensus 96 l~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gL 164 (301)
T TIGR03522 96 LQFIAGIYGM---KGQLLKQRVEEMIELVGLRPEQHKK--------IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGL 164 (301)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHCCCchHhcCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 9987655421 1222334578899999999888888 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..+++.|+++ ++ ++|||++||++ .++.++|||+++|++|++++.|+++++..
T Consensus 165 D~~~~~~l~~~l~~~-~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 165 DPNQLVEIRNVIKNI-GK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CHHHHHHHHHHHHHh-cC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999 44 69999999997 57999999999999999999999998654
No 61
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.7e-48 Score=360.50 Aligned_cols=203 Identities=21% Similarity=0.385 Sum_probs=176.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.||||++++||+++|+|+||||||||+++|+|+++|+ +|+|+++|+++.. .+++.++||||++ .++|.
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 114 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR 114 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence 5899999999999999999999999999999999984 8999999999853 2457899999997 58889
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||.+|+.+....... .....+..+++.++++.++|. +..++. +.+|||||||||+|||||+.+|++||+
T Consensus 115 ~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~--------p~~LSgG~~QRv~iArAL~~~P~llil 185 (331)
T PRK15079 115 MTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY--------PHEFSGGQCQRIGIARALILEPKLIIC 185 (331)
T ss_pred CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999986543211 112333445678899999994 466777 556999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++||+.++.+++++|++++++.|.|+|++|||+ ..+..+||++++|++|++++.|++++++
T Consensus 186 DEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 186 DEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999655689999999997 5788899999999999999999998775
No 62
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-48 Score=366.99 Aligned_cols=201 Identities=26% Similarity=0.397 Sum_probs=177.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c----ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K----FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. . .++.+||+||++.+++.+
T Consensus 45 ~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 5899999999999999999999999999999999994 8999999999753 1 135799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||.||+.|+...... ...+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~---~~~~~~~~~~e~L~~~gL~~~~~~~--------~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGI---NAEERREKALDALRQVGLENYAHSY--------PDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCChhhhcC--------cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999987654321 1223345678899999999888888 55699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||++||+.++..+.+.|++++++.|+|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999655689999999997 5788999999999999999999988764
No 63
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-48 Score=349.80 Aligned_cols=201 Identities=26% Similarity=0.393 Sum_probs=174.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c----ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K----FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. . .++.++|+||++.+++.+
T Consensus 41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 5899999999999999999999999999999999984 7999999998753 1 135799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||.||+.+....... ......+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||
T Consensus 118 tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 118 TVLENVAFGLEVQGV---PRAEREERAAEALELVGLEGWEHKY--------PDELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred cHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCHhHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999987543221 1122335578899999998888888 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+.++|++++++.|.|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 187 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999655589999999997 4788999999999999999999988664
No 64
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.2e-48 Score=340.03 Aligned_cols=198 Identities=32% Similarity=0.475 Sum_probs=172.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++.+++.+||.||
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 95 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREH 95 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHH
Confidence 5899999999999999999999999999999999984 8999999998753 356679999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....... ......+.+.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+||
T Consensus 96 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 96 LRFYARLKGL---PKSEIKEEVELLLRVLGLTDKANKR--------ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHHhCh--------hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 9986544321 1122234578899999998888887 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|+.++..+.+.|++++ + +.|||++||++ ..+..+||++++|++|+++..|+++++
T Consensus 165 D~~~~~~l~~~l~~~~-~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 165 DPASRRAIWDLILEVR-K-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CHHHHHHHHHHHHHHh-c-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999984 4 58999999997 478889999999999999999988753
No 65
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-48 Score=356.74 Aligned_cols=213 Identities=23% Similarity=0.336 Sum_probs=178.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC----------------------------
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE---------------------------- 55 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~---------------------------- 55 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|++..
T Consensus 24 ~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 24 DNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccccchH
Confidence 4799999999999999999999999999999999994 799999987641
Q ss_pred ccccccEEEEccCC-CCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChH
Q psy2520 56 GKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGG 133 (290)
Q Consensus 56 ~~~~~~ig~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgG 133 (290)
..+++.||||||++ ..+...||+||+.|+...... ......+++.++++.+||. +..++. +..||||
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~~LSgG 169 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGV---SKEEAKKRAAKYIELVGLDESYLQRS--------PFELSGG 169 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCC---CHHHHHHHHHHHHHHcCCChhhhhCC--------hhhCCHH
Confidence 12466799999985 334457999999987654321 2233345678999999996 677887 5569999
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 134 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 134 qrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|||||+||++|+.+|++|||||||+|||+.++..++++|++++ +.|.|||++||++ .++.++|||+++|++|++++.|
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivtHd~-~~~~~~adrv~vl~~G~i~~~g 247 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDL-DNVLEWTKRTIFFKDGKIIKDG 247 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeeCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999995 5599999999997 5788999999999999999999
Q ss_pred CHHHHHH---HHHHCCCCCCCC
Q psy2520 214 SKDAALA---FLESQGYPCPYG 232 (290)
Q Consensus 214 ~~~~~~~---~~~~~g~~~~~~ 232 (290)
++++++. .+...+...|..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~p~~ 269 (305)
T PRK13651 248 DTYDILSDNKFLIENNMEPPKL 269 (305)
T ss_pred CHHHHhcCHHHHHHCCCCCChH
Confidence 9998763 344556554433
No 66
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.9e-48 Score=340.58 Aligned_cols=194 Identities=30% Similarity=0.403 Sum_probs=169.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+||+||
T Consensus 22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 5789999999999999999999999999999999984 8999999998753 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ........+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+||
T Consensus 99 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~illlDEPt~~L 167 (218)
T cd03266 99 LEYFAGLYGL---KGDELTARLEELADRLGMEELLDRR--------VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL 167 (218)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHHhhh--------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCC
Confidence 9886543321 1223345678899999998888887 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+.++..+.+.|++++ ++|.|||++||++ .++..+||++++|++|+++..|
T Consensus 168 D~~~~~~l~~~l~~~~-~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 168 DVMATRALREFIRQLR-ALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999994 4589999999997 5788999999999999998654
No 67
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.1e-48 Score=346.85 Aligned_cols=203 Identities=28% Similarity=0.387 Sum_probs=172.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++.+|++++|+|||||||||||++|+|+++|. +|+|.++|.++.. .+++.++|+||++.+++.+|
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT 95 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence 4899999999999999999999999999999999984 8999999998742 14567999999998999999
Q ss_pred HHHHHHHHHHhcC-----chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 77 VYEHLYFMALLKL-----DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 77 v~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|.||+.++..... ..........+++.++++.+++.+..++. +..|||||||||+|||||+.+|++|
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999987532100 00001122335678899999998877877 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
||||||+|||+.++..+.+.|++++++.|+|||++||++ .++.++||++++|++|+++..|+++++
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999998555589999999997 478889999999999999999988764
No 68
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-48 Score=338.93 Aligned_cols=194 Identities=28% Similarity=0.473 Sum_probs=169.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....++.++|++|++.+++.+||.||+.+
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 93 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVY 93 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHH
Confidence 4799999999999999999999999999999999984 8999999998755456789999999999999999999988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....+.. ......+.+.++++.+++.+..++. +.+||||||||++||+||+.+|+++||||||+|||+.
T Consensus 94 ~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~ 162 (210)
T cd03269 94 LAQLKGL---KKEEARRRIDEWLERLELSEYANKR--------VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPV 162 (210)
T ss_pred HHHHcCC---ChHHHHHHHHHHHHHcCChHHHhCc--------HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 6543321 1222345678899999998877877 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
++..+.+.|+++++ +|.|||++||++ .++.++||++++|++|++++.|
T Consensus 163 ~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 163 NVELLKDVIRELAR-AGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999854 589999999997 4788899999999999998654
No 69
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-48 Score=343.95 Aligned_cols=200 Identities=25% Similarity=0.402 Sum_probs=174.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+||+|
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (242)
T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE 94 (242)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH
Confidence 4799999999999999999999999999999999984 7999999998753 24568999999999999999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC--ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN--SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.++...... ......+.+.++++.+++.+ ..++. +.+|||||||||+|||||+.+|++|||||||
T Consensus 95 ~l~~~~~~~~~---~~~~~~~~~~~~l~~l~l~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 95 NIALVPKLLKW---PKEKIRERADELLALVGLDPAEFADRY--------PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHcCCCcHHHHhcC--------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 99886543221 12223455788999999985 66777 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
+|||+.++..+.+.|++++++.|+|||++||++ .++..+||++++|++|+++..|+++++
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999554589999999997 478899999999999999999988765
No 70
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-47 Score=351.13 Aligned_cols=211 Identities=22% Similarity=0.364 Sum_probs=177.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHD--LFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~--~~~~ 73 (290)
.||||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.|||+||++ .+++
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (286)
T PRK13646 24 HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE 100 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence 5899999999999999999999999999999999994 7999999998742 2567899999985 4555
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.||.||+.|+...... ...+..+++.++++.+||. +..++. +..|||||||||+|||||+.+|++||
T Consensus 101 -~tv~e~i~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~~LSgGq~qrv~laraL~~~p~ill 168 (286)
T PRK13646 101 -DTVEREIIFGPKNFKM---NLDEVKNYAHRLLMDLGFSRDVMSQS--------PFQMSGGQMRKIAIVSILAMNPDIIV 168 (286)
T ss_pred -hhHHHHHHhhHHHcCC---CHHHHHHHHHHHHHHcCCChhhhhCC--------cccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 5999999987543221 2223345678899999996 567777 55699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCC
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPC 229 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~ 229 (290)
|||||+|||+.++..+.++|++++.+.|+|||++||++ .++..+||++++|++|+++..|++++++. .+...++..
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 247 (286)
T PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGL 247 (286)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhCHHHHHHcCCCC
Confidence 99999999999999999999999555689999999997 47888999999999999999999988654 233445443
Q ss_pred C
Q psy2520 230 P 230 (290)
Q Consensus 230 ~ 230 (290)
|
T Consensus 248 ~ 248 (286)
T PRK13646 248 P 248 (286)
T ss_pred C
Confidence 3
No 71
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8.2e-48 Score=348.72 Aligned_cols=202 Identities=24% Similarity=0.399 Sum_probs=174.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+|
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 100 (269)
T PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMN 100 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCC
Confidence 4799999999999999999999999999999999984 8999999998752 13567999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|.||+.+....... .........+.++++.+++.+..++. +..|||||||||+|||||+.+|++||||||
T Consensus 101 v~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgGq~qrv~laral~~~p~lllLDEP 170 (269)
T PRK11831 101 VFDNVAYPLREHTQ--LPAPLLHSTVMMKLEAVGLRGAAKLM--------PSELSGGMARRAALARAIALEPDLIMFDEP 170 (269)
T ss_pred HHHHHHHHHHHccC--CCHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999886432211 11222334567889999998888887 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..++++|++++++.|.|||++||++ .++.++||++++|++|++++.|++++++
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 171 FVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999555589999999997 5788999999999999999999988654
No 72
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.6e-48 Score=339.97 Aligned_cols=190 Identities=32% Similarity=0.466 Sum_probs=164.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc--------ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK--------FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~--------~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... .++.++|++|++.+++.+
T Consensus 21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL 97 (218)
T ss_pred eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence 4799999999999999999999999999999999984 89999999987531 246799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.+....+.. ......+.+.++++.+||.+..++. +.+|||||||||+|||||+.+|++|||||
T Consensus 98 tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 98 TALENVELPLLLAGV---PKKERRERAEELLERVGLGDRLNHY--------PSELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred cHHHHHHHHHhhcCC---CHHHHHHHHHHHHHHcCCchhhhcC--------hhhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 999999987544321 1122334578899999998888887 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
||+|||+.++..+.++|++++++.|+|||++||++. ++. +||++++|++|++
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999999999999999999995545899999999974 565 9999999999974
No 73
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5.5e-48 Score=339.53 Aligned_cols=198 Identities=29% Similarity=0.468 Sum_probs=170.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. . .++.++|+||++.+++.+|++
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE 93 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence 4899999999999999999999999999999999984 8999999998753 1 246799999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHc-CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.++..... . ......+.++++.+ ++.+..++. +..||||||||++|||||+.+|++|||||||
T Consensus 94 ~~l~~~~~~~~--~---~~~~~~~~~~l~~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 94 ENLLLGAYARR--R---AKRKARLERVYELFPRLKERRKQL--------AGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred HHHHHHhhhcC--c---hhHHHHHHHHHHHHHhhhhhhhCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99998754321 1 11223456677777 477677777 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+++.|+++++ .|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999954 689999999997 5788999999999999999999887653
No 74
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=9.6e-48 Score=344.14 Aligned_cols=201 Identities=28% Similarity=0.430 Sum_probs=173.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------------cccccEEEEccCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------------KFRSACGFMYQHDLF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------------~~~~~ig~v~Q~~~~ 71 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 20 HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 5899999999999999999999999999999999884 7999999998742 235679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
++.+||.||+.++...... .......+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|
T Consensus 97 ~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~Gq~qrv~la~al~~~p~ll 166 (250)
T PRK11264 97 FPHRTVLENIIEGPVIVKG--EPKEEATARARELLAKVGLAGKETSY--------PRRLSGGQQQRVAIARALAMRPEVI 166 (250)
T ss_pred CCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhCC--------hhhCChHHHHHHHHHHHHhcCCCEE
Confidence 9999999999875432111 11223345577899999998877777 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ +.|.|||++||++ .++.++||++++|++|++++.|++++++
T Consensus 167 lLDEPt~~LD~~~~~~l~~~l~~~~-~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 167 LFDEPTSALDPELVGEVLNTIRQLA-QEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999995 4589999999997 5788899999999999999999988653
No 75
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-48 Score=337.27 Aligned_cols=194 Identities=28% Similarity=0.412 Sum_probs=168.0
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 899999999999999999999999999999999984 8999999998754 23567999999999999999999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+....... .. ....+++.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||||+|||+
T Consensus 93 ~~~~~~~~--~~-~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~ 161 (211)
T cd03298 93 LGLSPGLK--LT-AEDRQAIEVALARVGLAGLEKRL--------PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161 (211)
T ss_pred cccccccC--cc-HHHHHHHHHHHHHcCCHHHHhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 75432111 11 12234578899999998888887 456999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
.++..+++.|++++++.|.|||++||++ .++..+||++++|++|+++..|
T Consensus 162 ~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 162 ALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999555589999999997 5788899999999999987653
No 76
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-47 Score=348.46 Aligned_cols=211 Identities=26% Similarity=0.360 Sum_probs=176.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.+||+||++. .++..||+
T Consensus 22 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 98 (274)
T PRK13647 22 KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW 98 (274)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence 4899999999999999999999999999999999984 8999999998853 24567999999862 45568999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.|+..... .......+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 99 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~--------~~~LSgG~~qrv~laraL~~~p~llllDEPt~ 167 (274)
T PRK13647 99 DDVAFGPVNMG---LDKDEVERRVEEALKAVRMWDFRDKP--------PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167 (274)
T ss_pred HHHHhhHHHcC---CCHHHHHHHHHHHHHHCCCHHHhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 99998654321 12223335578899999998888888 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH--HHHHHCCCCCC
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL--AFLESQGYPCP 230 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~--~~~~~~g~~~~ 230 (290)
|||+.++..++++|++++. .|.|||++||++ .++.++||++++|++|++++.|+++++. ..+...++..|
T Consensus 168 ~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 168 YLDPRGQETLMEILDRLHN-QGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHhcCHHHHHHcCCCCC
Confidence 9999999999999999954 489999999997 4778899999999999999999986532 13334454443
No 77
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9e-48 Score=361.20 Aligned_cols=198 Identities=25% Similarity=0.391 Sum_probs=175.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~lT 76 (290)
|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|+||++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 799999999999999999999999999999999984 8999999998742 23567999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|+..... .....+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++||||||
T Consensus 92 v~enl~~~~~~~~-----~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 92 VRGNLRYGMKRAR-----PSERRISFERVIELLGIGHLLGRL--------PGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred HHHHHHHHhhccC-----hhHHHHHHHHHHHHcCChhHhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 9999998754221 122234578899999999888888 556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++.|++++++.|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 159 ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999999999655589999999997 5788999999999999999999998765
No 78
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1e-47 Score=362.51 Aligned_cols=201 Identities=25% Similarity=0.368 Sum_probs=177.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE----ecCc-------cc-cccEEEEccCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK----PVEG-------KF-RSACGFMYQHDLF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~----~~~~-------~~-~~~ig~v~Q~~~~ 71 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+ ++.. .+ ++.++|+||++.+
T Consensus 41 ~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5899999999999999999999999999999999994 899999997 3321 12 2579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
++.+||.||+.|+..... ....+...++.++++.+||.++.++. +.+|||||||||+|||||+.+|++|
T Consensus 118 ~p~~Tv~eNi~~~~~~~g---~~~~~~~~~a~e~le~vgL~~~~~~~--------~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQG---MPEAERRKRVDEQLELVGLAQWADKK--------PGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999865432 12234455678999999999888888 4559999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||++||+.++..+.+.|.+++++.|+|||++|||+ +++.++||++++|++|+++..|++++++
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999655689999999997 5788999999999999999999998875
No 79
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-47 Score=342.05 Aligned_cols=201 Identities=27% Similarity=0.419 Sum_probs=173.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~lTv 77 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.. .+++.++|++|++.+++.+||
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (240)
T PRK09493 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA 94 (240)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence 4899999999999999999999999999999999984 8999999998753 245679999999989999999
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
+||+.+....... .......+.+.++++.+|+.+..++. +..||||||||++|||||+.+|+++||||||
T Consensus 95 ~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEP~ 164 (240)
T PRK09493 95 LENVMFGPLRVRG--ASKEEAEKQARELLAKVGLAERAHHY--------PSELSGGQQQRVAIARALAVKPKLMLFDEPT 164 (240)
T ss_pred HHHHHhHHHHhcC--CCHHHHHHHHHHHHHHcCChHHHhcC--------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9999876421111 11222345578899999998877887 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.++|++++ ++|+|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 165 ~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 165 SALDPELRHEVLKVMQDLA-EEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred ccCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999995 4589999999997 5788899999999999999999988654
No 80
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.1e-48 Score=341.20 Aligned_cols=199 Identities=25% Similarity=0.408 Sum_probs=168.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC-----CCCCCCccEEEECCEecCc------cccccEEEEccCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL-----PDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~-----~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~ 72 (290)
.|+||++++||+++|+||||||||||+++|+|++ +| .+|+|.++|+++.. .+++.++|+||++.++
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 93 (227)
T cd03260 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF 93 (227)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence 4899999999999999999999999999999999 77 48999999998742 2456899999998888
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.+||+||+.+........ ......+++.++++.+++.+..++.+. +.+|||||||||+|||||+.+|++||
T Consensus 94 -~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~LSgG~~qrv~la~al~~~p~lll 164 (227)
T cd03260 94 -PGSIYDNVAYGLRLHGIK--LKEELDERVEEALRKAALWDEVKDRLH------ALGLSGGQQQRLCLARALANEPEVLL 164 (227)
T ss_pred -cccHHHHHHhHHHhcCCC--cHHHHHHHHHHHHHHcCCChHHhccCC------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 789999998865433211 111223557789999999877666520 14599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
|||||+|||+.++..+++.|++++ ++ .|||++||++ .++..+||++++|++|++++.|++++
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~-~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 165 LDEPTSALDPISTAKIEELIAELK-KE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-hC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999994 44 8999999997 47888999999999999999988764
No 81
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.3e-48 Score=366.32 Aligned_cols=203 Identities=27% Similarity=0.348 Sum_probs=176.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||||+|+|+++|. +|+|+++|+++.. .+++.+||++|++.+++.+||+|
T Consensus 20 ~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e 96 (402)
T PRK09536 20 DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQ 96 (402)
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHH
Confidence 4899999999999999999999999999999999994 8999999998754 35678999999999989999999
Q ss_pred HHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.++...+... ........+++.++++.+++.+..++. +.+|||||||||+|||||+++|++|||||||+
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~--------~~~LSgGerQRv~IArAL~~~P~iLLLDEPts 168 (402)
T PRK09536 97 VVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP--------VTSLSGGERQRVLLARALAQATPVLLLDEPTA 168 (402)
T ss_pred HHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 999864321100 000122345678999999999988888 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++.+++++|+++++ .|.|||++||++ .++.++|||+++|++|+++..|++++++
T Consensus 169 gLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 169 SLDINHQVRTLELVRRLVD-DGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred cCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999954 589999999997 5788999999999999999999999864
No 82
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=360.32 Aligned_cols=195 Identities=26% Similarity=0.410 Sum_probs=174.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~lT 76 (290)
|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. ..++.++|+||++.+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 799999999999999999999999999999999984 8999999998742 23578999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|+... ...+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++||||||
T Consensus 93 v~enl~~~~~~---------~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgGq~qRvalaraL~~~p~llLLDEP 155 (352)
T PRK11144 93 VRGNLRYGMAK---------SMVAQFDKIVALLGIEPLLDRY--------PGSLSGGEKQRVAIGRALLTAPELLLMDEP 155 (352)
T ss_pred HHHHHHhhhhh---------hhHHHHHHHHHHcCCchhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 99999886421 1124577899999999888888 556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|++||+.++..+++.|++++++.|.|+|++||++ .++..+||++++|++|+++..|+++++..
T Consensus 156 ts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 156 LASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999999655589999999997 57899999999999999999999998753
No 83
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-47 Score=354.70 Aligned_cols=212 Identities=22% Similarity=0.356 Sum_probs=178.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------------------cccccEE
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------------------KFRSACG 63 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------------------~~~~~ig 63 (290)
.||||++++||+++|+||||||||||+++|+|+++|. +|+|+++|.++.. .+++.+|
T Consensus 43 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 119 (320)
T PRK13631 43 NNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS 119 (320)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence 4899999999999999999999999999999999994 8999999987632 2467899
Q ss_pred EEccCC--CCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHH
Q psy2520 64 FMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSF 140 (290)
Q Consensus 64 ~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~i 140 (290)
||||++ .+++ .||+||+.|+..... ....+..+++.++++.++|. +..++. +.+|||||||||+|
T Consensus 120 ~v~Q~~~~~l~~-~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~~LSgGqkqRvai 187 (320)
T PRK13631 120 MVFQFPEYQLFK-DTIEKDIMFGPVALG---VKKSEAKKLAKFYLNKMGLDDSYLERS--------PFGLSGGQKRRVAI 187 (320)
T ss_pred EEEECchhcccc-chHHHHHHhhHHhcC---CCHHHHHHHHHHHHHHcCCChhHhcCC--------cccCCHHHHHHHHH
Confidence 999986 4555 599999988754321 12223345678899999996 567777 55699999999999
Q ss_pred HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 141 ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 141 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||+.+|++|||||||+|||+.++..++++|++++ ++|.|||++||++ +++..+||++++|++|+++..|++++++.
T Consensus 188 AraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~-~~g~TiiivtHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK-ANNKTVFVITHTM-EHVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999984 4589999999997 46888999999999999999999998753
Q ss_pred ---HHHHCCCCCCCC
Q psy2520 221 ---FLESQGYPCPYG 232 (290)
Q Consensus 221 ---~~~~~g~~~~~~ 232 (290)
.+...++..|..
T Consensus 266 ~~~~~~~~~~~~p~~ 280 (320)
T PRK13631 266 DQHIINSTSIQVPRV 280 (320)
T ss_pred CHHHHHHcCCCCChH
Confidence 445566665543
No 84
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7.8e-48 Score=335.17 Aligned_cols=187 Identities=29% Similarity=0.443 Sum_probs=162.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCC-CCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDL-FSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~-~~~~lTv~e~l 81 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|+||++. .+..+||.||+
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l 93 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREEL 93 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHH
Confidence 4799999999999999999999999999999999984 8999999998753 34567999999964 34467999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.++..... . ...++.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+|||
T Consensus 94 ~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 94 LLGLKELD----A---GNEQAETVLKDLDLYALKERH--------PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred hhhhhhcC----c---cHHHHHHHHHHcCCchhcCCC--------chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 88653221 1 113467899999999888888 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 210 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~ 210 (290)
+.++..+.+.|+++++ .|.|||++||++ .++..+||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAA-QGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999999999999954 589999999997 4788899999999999874
No 85
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.3e-47 Score=339.13 Aligned_cols=200 Identities=30% Similarity=0.438 Sum_probs=172.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.++||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++.++|++|++.+++.+|++||
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 94 (236)
T TIGR03864 18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQN 94 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHH
Confidence 4799999999999999999999999999999999984 8999999998753 233579999999988889999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ......+.+.++++.+|+.+..++. +..||||||||++|||||+.+|+++||||||+||
T Consensus 95 l~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrl~laral~~~p~llllDEP~~~L 163 (236)
T TIGR03864 95 LRYHAALHGL---SRAEARERIAALLARLGLAERADDK--------VRELNGGHRRRVEIARALLHRPALLLLDEPTVGL 163 (236)
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHcCChhhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 9876543311 1222334577899999998888887 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+.++..+.+.|+++++++|.|||++||++. ++. .||++++|++|+++..|+++++.
T Consensus 164 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 164 DPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999995445899999999974 565 59999999999999999988654
No 86
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-48 Score=333.49 Aligned_cols=200 Identities=26% Similarity=0.401 Sum_probs=173.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
++|||++++||+++|+|||||||||||++|+|+.++. +|+|.++|++++. ..+..++||||...+|+.|||+
T Consensus 20 ~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVe 96 (237)
T COG0410 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVE 96 (237)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHH
Confidence 5899999999999999999999999999999999984 7999999999975 2577899999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELG-LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|||..++...... ......++++.+.|- |.+..+++ ...|||||||.++|||||+.+|++|+|||||
T Consensus 97 ENL~~g~~~~~~~----~~~~~~~e~v~~lFP~Lker~~~~--------aG~LSGGEQQMLAiaRALm~~PklLLLDEPs 164 (237)
T COG0410 97 ENLLLGAYARRDK----EAQERDLEEVYELFPRLKERRNQR--------AGTLSGGEQQMLAIARALMSRPKLLLLDEPS 164 (237)
T ss_pred HHHhhhhhccccc----ccccccHHHHHHHChhHHHHhcCc--------ccCCChHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999886543221 111112556666664 55667777 5569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.||-|.-..+|++.+++++++.|.||++|.++. ..+.+++||.++|.+|+++++|+++++.
T Consensus 165 ~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 165 EGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred cCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 999999999999999999666689999999997 5789999999999999999999999775
No 87
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=8.5e-48 Score=335.49 Aligned_cols=190 Identities=29% Similarity=0.393 Sum_probs=166.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. .+++.++|+||++.+++.+||.||+
T Consensus 17 ~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 93 (208)
T cd03268 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence 4799999999999999999999999999999999984 8999999988753 3456799999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.++...... ..+++.++++.+++.+..++. +..|||||||||+|||||+.+|++|||||||+|||
T Consensus 94 ~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 158 (208)
T cd03268 94 RLLARLLGI-------RKKRIDEVLDVVGLKDSAKKK--------VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158 (208)
T ss_pred HHHHHhcCC-------cHHHHHHHHHHcCCHHHHhhh--------HhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 886543211 123467889999998888887 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
+.++..+.++|+++++ .|.|||++||++ .++..+||++++|++|++++.|
T Consensus 159 ~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 159 PDGIKELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999854 689999999997 4788899999999999998754
No 88
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.5e-47 Score=339.47 Aligned_cols=199 Identities=26% Similarity=0.387 Sum_probs=169.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... ....+|++|++.+++.+||.||+.+
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 4899999999999999999999999999999999984 89999999987542 2235899999999999999999988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....... ........+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR--------PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 6421111 112223344578899999998888887 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
++..+.+.|++++++.|+|||++||++ .++.++||++++|++|+++..|+..
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCce
Confidence 999999999998655589999999997 4788999999999999999888654
No 89
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.4e-47 Score=335.39 Aligned_cols=189 Identities=29% Similarity=0.468 Sum_probs=164.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|++|++.+++.+|
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT 95 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCc
Confidence 4799999999999999999999999999999999884 8999999998753 24568999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|.||+.+....... ......+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++||||||
T Consensus 96 v~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 96 VYENVALPLEVRGK---KEREIQRRVGAALRQVGLEHKADAF--------PEQLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 99999987543221 1122335678899999998877777 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
|+|||+.++..+.+.|++++ +.|+|||++||++ .++..+||++++|++|+
T Consensus 165 t~~LD~~~~~~l~~~l~~~~-~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 165 TGNLDPDLSERILDLLKRLN-KRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred cccCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 99999999999999999984 4589999999997 57888999999999885
No 90
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-48 Score=336.78 Aligned_cols=202 Identities=22% Similarity=0.415 Sum_probs=188.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||.+++|++++++|||||||||.+++|.|++.|+ +|+|.++|.+++...+.+|||+|.+..+|+.+||.|.+.|
T Consensus 19 ~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~y 95 (300)
T COG4152 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKY 95 (300)
T ss_pred cceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHH
Confidence 5899999999999999999999999999999999994 8999999999988888899999999999999999999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
.+.++.. +..+..+.+..||+++++.....++ +.+||.|++|++.+..+++++|+++|||||+|||||.
T Consensus 96 la~LkGm---~~~e~~~~~~~wLer~~i~~~~~~k--------Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPV 164 (300)
T COG4152 96 LAELKGM---PKAEIQKKLQAWLERLEIVGKKTKK--------IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV 164 (300)
T ss_pred HHHhcCC---cHHHHHHHHHHHHHhccccccccch--------HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChh
Confidence 9998764 4455667789999999999998888 5559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 221 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 221 (290)
+.+.+.+.+.++ ++.|.|||++||.+ +.+.++||++++|++|+.|.+|+.+++.+.
T Consensus 165 N~elLk~~I~~l-k~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 165 NVELLKDAIFEL-KEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred hHHHHHHHHHHH-HhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999 66799999999997 579999999999999999999999988653
No 91
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-47 Score=337.52 Aligned_cols=195 Identities=29% Similarity=0.437 Sum_probs=167.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-------c-cccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-------F-RSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-------~-~~~ig~v~Q~~~~~~~l 75 (290)
.++||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++... + ++.++|+||++.+++.+
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF 102 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence 4799999999999999999999999999999999984 89999999987531 2 25799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.+....... ......+++.++++.+|+.+..++. +.+||||||||++|||||+.+|++|||||
T Consensus 103 tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgG~~qrl~la~al~~~p~lllLDE 171 (233)
T PRK11629 103 TALENVAMPLLIGKK---KPAEINSRALEMLAAVGLEHRANHR--------PSELSGGERQRVAIARALVNNPRLVLADE 171 (233)
T ss_pred CHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999986543211 1222335678899999998888877 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
||+|||+.++..+.+.|++++++.|.|||++||++ .++.. +|++++|++|+++..++
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEec
Confidence 99999999999999999998544589999999997 45554 57999999999998775
No 92
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.7e-47 Score=334.70 Aligned_cols=190 Identities=26% Similarity=0.408 Sum_probs=165.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++.+++.+|
T Consensus 18 ~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (214)
T cd03292 18 DGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN 94 (214)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence 4899999999999999999999999999999999984 8999999998743 24567999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+.||+.++...... ......+++.++++.+++.+..++. +.+||||||||++|||||+.+|+++|||||
T Consensus 95 ~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 95 VYENVAFALEVTGV---PPREIRKRVPAALELVGLSHKHRAL--------PAELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHhhCC--------hhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999987543321 1222335678899999998877777 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
|+|||+.++..+.+.|++++ ++|.|||++||++ .++..+||++++|++|++
T Consensus 164 t~~LD~~~~~~~~~~l~~~~-~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKIN-KAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999984 4589999999997 578889999999999974
No 93
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-47 Score=344.60 Aligned_cols=201 Identities=24% Similarity=0.342 Sum_probs=173.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCC-CCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHD-LFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~-~~~~~lTv~ 78 (290)
.|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.+||+||++ .+++..||.
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 100 (279)
T PRK13635 24 KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQ 100 (279)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHH
Confidence 4899999999999999999999999999999999994 8999999999853 2456799999997 467778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...... ...+..+++.++++.+||.+..++. +..|||||||||+|||||+.+|++|||||||+
T Consensus 101 enl~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 169 (279)
T PRK13635 101 DDVAFGLENIGV---PREEMVERVDQALRQVGMEDFLNRE--------PHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169 (279)
T ss_pred HHHhhhHhhCCC---CHHHHHHHHHHHHHHcCChhhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999987543321 2223345678899999999888888 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||+.++..+++.|++++++.|.|||++||++. ++. .||++++|++|++++.|+++++..
T Consensus 170 gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 170 MLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999996555899999999974 565 699999999999999999987653
No 94
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-47 Score=353.46 Aligned_cols=202 Identities=22% Similarity=0.345 Sum_probs=175.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.||||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+++.. .+++.++||||++ .+.+.
T Consensus 32 ~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 108 (327)
T PRK11308 32 DGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR 108 (327)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence 4899999999999999999999999999999999984 8999999999753 2466899999997 58899
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||.+++.+....... ....+..+++.++++.+||. ..+++. +.+|||||||||+|||||+.+|++||+
T Consensus 109 ~~v~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gL~~~~~~~~--------p~~LSgGq~QRv~iArAL~~~P~lLil 178 (327)
T PRK11308 109 KKVGQILEEPLLINTS--LSAAERREKALAMMAKVGLRPEHYDRY--------PHMFSGGQRQRIAIARALMLDPDVVVA 178 (327)
T ss_pred cCHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHCCCChHHhcCC--------CccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999876543311 12233456688999999996 356777 556999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++||+.++.+++++|++++++.|.|||+||||+ ..+..+||++++|++|++++.|++++++
T Consensus 179 DEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 179 DEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999665699999999997 4778899999999999999999998775
No 95
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-47 Score=337.77 Aligned_cols=200 Identities=26% Similarity=0.396 Sum_probs=173.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
|+||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. ..++.++|+||++.+++.+|+.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999984 7999999998753 23467999999999999999999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+...... ... .....++.++++.+++.+..++. +..||||||||++|||||+.+|+++||||||+|||+
T Consensus 94 ~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~ 162 (232)
T PRK10771 94 LGLNPGL--KLN-AAQREKLHAIARQMGIEDLLARL--------PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDP 162 (232)
T ss_pred ccccccc--CCC-HHHHHHHHHHHHHcCcHHHHhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 7532111 011 12234578899999998888888 556999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.++..+.++|++++++.|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 163 ~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 163 ALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999998555589999999997 4788899999999999999999988664
No 96
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.7e-47 Score=339.39 Aligned_cols=202 Identities=24% Similarity=0.403 Sum_probs=171.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. ...+|+|+++|+++.. .+++.++|+||++.+++ +
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 96 (247)
T TIGR00972 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-M 96 (247)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-C
Confidence 5899999999999999999999999999999999872 0117999999998752 24578999999988888 9
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.+....+.. .......+.+.++++.+++. +..++. +.+|||||||||+|||||+.+|+++
T Consensus 97 tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgG~~qrv~laral~~~p~ll 166 (247)
T TIGR00972 97 SIYDNIAYGPRLHGI--KDKKELDEIVEESLKKAALWDEVKDRLHDS--------ALGLSGGQQQRLCIARALAVEPEVL 166 (247)
T ss_pred CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCCcchhhHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999986543321 11223335578899999997 566666 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..++++|++++ + +.|||++||++ .++..+||++++|++|+++..|++++++
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 167 LLDEPTSALDPIATGKIEELIQELK-K-KYTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHH-h-cCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999994 4 48999999997 4788999999999999999999988653
No 97
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-47 Score=347.48 Aligned_cols=199 Identities=22% Similarity=0.338 Sum_probs=171.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHD--LFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~--~~~~ 73 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. ..++.+||+||++ .++
T Consensus 24 ~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~- 99 (287)
T PRK13641 24 DNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF- 99 (287)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-
Confidence 5899999999999999999999999999999999994 8999999998742 2356799999986 344
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.+||.||+.|+...... ......+++.++++.++|. +..+++ +..|||||||||+|||||+.+|++||
T Consensus 100 ~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~~LSgGq~qrl~laral~~~p~lLl 168 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGF---SEDEAKEKALKWLKKVGLSEDLISKS--------PFELSGGQMRRVAIAGVMAYEPEILC 168 (287)
T ss_pred cchHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCChhHhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 57999999886543221 1223345678899999997 577887 45599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+.++|++++ +.|.|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 169 LDEPt~gLD~~~~~~l~~~l~~l~-~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 169 LDEPAAGLDPEGRKEMMQLFKDYQ-KAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999994 4589999999997 5788999999999999999999998765
No 98
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-47 Score=341.31 Aligned_cols=204 Identities=24% Similarity=0.368 Sum_probs=173.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. . .+..++|+||++.+++.+||.
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (255)
T PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVI 98 (255)
T ss_pred EeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHH
Confidence 4899999999999999999999999999999999984 8999999998753 1 244699999999999999999
Q ss_pred HHHHHHHHhcCc----------h--hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 79 EHLYFMALLKLD----------R--RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 79 e~l~~~~~~~~~----------~--~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
||+.++...... . ..........+.++++.+|+.+..++. +.+|||||||||+||+||+.
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~la~al~~ 170 (255)
T PRK11300 99 ENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ--------AGNLAYGQQRRLEIARCMVT 170 (255)
T ss_pred HHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC--------hhhCCHHHHHHHHHHHHHhc
Confidence 999986431100 0 001112234577889999998888888 45599999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|++|||||||+|||+.++..+.+.|.+++++.|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 171 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 171 QPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 99999999999999999999999999999554589999999997 5788999999999999999999988654
No 99
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-46 Score=342.23 Aligned_cols=202 Identities=27% Similarity=0.385 Sum_probs=174.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++. .+...||.
T Consensus 21 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (277)
T PRK13652 21 NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE 97 (277)
T ss_pred eEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence 5899999999999999999999999999999999984 8999999998753 34567999999863 34467999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.+...... .......+.+.++++.++|.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 98 ~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~Gq~qrl~laraL~~~p~llilDEPt~ 166 (277)
T PRK13652 98 QDIAFGPINLG---LDEETVAHRVSSALHMLGLEELRDRV--------PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166 (277)
T ss_pred HHHHhHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99987654321 12223345678899999998888888 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||+.++..+.++|++++++.|.|||++||++ .++.++||++++|++|++++.|++++++.
T Consensus 167 gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999654589999999997 57889999999999999999999998753
No 100
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-47 Score=351.34 Aligned_cols=205 Identities=21% Similarity=0.315 Sum_probs=174.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC-CCccEEEECCEecCc----c----ccccEEEEccCC--CCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC-IIDGDIRVNGKPVEG----K----FRSACGFMYQHD--LFS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~-~~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~--~~~ 72 (290)
.||||++++||+++|+|+||||||||+++|+|+++|.. .++|+|.++|+++.. . .++.|+||||++ .+.
T Consensus 24 ~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~ 103 (326)
T PRK11022 24 DRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLN 103 (326)
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcC
Confidence 48999999999999999999999999999999987421 258999999999753 1 124699999997 578
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
|.+||.+++......... ....+..+++.++++.+||.+ ..++. +.+|||||||||+|||||+.+|+
T Consensus 104 p~~~v~~~i~~~l~~~~~--~~~~~~~~~~~~~L~~~gL~~~~~~l~~~--------p~~LSgGq~QRv~iArAL~~~P~ 173 (326)
T PRK11022 104 PCYTVGFQIMEAIKVHQG--GNKKTRRQRAIDLLNQVGIPDPASRLDVY--------PHQLSGGMSQRVMIAMAIACRPK 173 (326)
T ss_pred CcCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHCCCCChHHHHhCC--------chhCCHHHHHHHHHHHHHHhCCC
Confidence 999999998776543211 122334566889999999964 34666 56699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+||+||||++||+.++.+++++|++++++.|.|+|++|||+ ..+..+||+|++|++|+++..|++++++
T Consensus 174 llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 174 LLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999665699999999997 4778899999999999999999998875
No 101
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6.9e-47 Score=351.90 Aligned_cols=205 Identities=24% Similarity=0.377 Sum_probs=174.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c---cc-ccEEEEccCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K---FR-SACGFMYQHD--LFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~---~~-~~ig~v~Q~~--~~~~ 73 (290)
.||||++++||+++|+|+||||||||+++|+|+++|...++|+|.++|+++.. . ++ +.|+||||++ .+.|
T Consensus 33 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p 112 (330)
T PRK09473 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNP 112 (330)
T ss_pred eeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCC
Confidence 58999999999999999999999999999999998842238999999999853 1 23 4799999997 6889
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc---cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS---QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
.+|+.+++.+....+.. ....+..+++.++++.++|.+. .++. +.+|||||||||+|||||+.+|++
T Consensus 113 ~~~v~~~i~~~~~~~~~--~~~~~~~~~~~~~L~~vgL~~~~~~~~~~--------p~~LSgG~~QRv~IArAL~~~P~l 182 (330)
T PRK09473 113 YMRVGEQLMEVLMLHKG--MSKAEAFEESVRMLDAVKMPEARKRMKMY--------PHEFSGGMRQRVMIAMALLCRPKL 182 (330)
T ss_pred CCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCChHHHhcCC--------cccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999876544321 1233344567889999999753 2444 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+||||++||+.++.+++++|++++++.|.|+|++|||+ ..+..+||++++|++|++++.|++++++
T Consensus 183 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 183 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999665689999999997 4778899999999999999999999875
No 102
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.5e-47 Score=334.67 Aligned_cols=198 Identities=39% Similarity=0.659 Sum_probs=168.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC---CCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP---DDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~---~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++.. .+++.++|+||++.+++.+||.|
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~---~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 100 (226)
T cd03234 24 NDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT---TSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRE 100 (226)
T ss_pred cCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCC---CceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHH
Confidence 47999999999999999999999999999999998 6 48999999998754 35678999999999999999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHH-HHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINS-LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.|+.................+.+ +++.+++.+..++. +..|||||+|||+|||+|+.+|++|||||||+
T Consensus 101 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~illlDEP~~ 172 (226)
T cd03234 101 TLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL--------VKGISGGERRRVSIAVQLLWDPKVLILDEPTS 172 (226)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc--------ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 9998754332111111122233445 88899998777777 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|||+.++..+.++|++++ +.|.|+|++||++..++.++||++++|++|++++.|
T Consensus 173 gLD~~~~~~~~~~l~~~~-~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 173 GLDSFTALNLVSTLSQLA-RRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999984 458999999999734789999999999999998765
No 103
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.5e-47 Score=334.85 Aligned_cols=197 Identities=25% Similarity=0.365 Sum_probs=164.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|+++.. .+++.++|++|++ .+++.
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 4799999999999999999999999999999999984 8999999998753 2456899999997 56778
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||++|+.+......... ........+.++++.+++. ...++. +.+|||||||||+|||||+.+|++|||
T Consensus 99 ~tv~~nl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lllL 169 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVLNRY--------PHELSGGQRQRVAIARALALNPKLLIA 169 (228)
T ss_pred CCHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHCCCChhHhhCC--------chhcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999988654332111 1111112235788999995 566777 455999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
||||+|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|+++..|
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999554489999999997 4777899999999999998654
No 104
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-47 Score=338.66 Aligned_cols=201 Identities=26% Similarity=0.430 Sum_probs=173.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++.++|+||++.+++.+||.
T Consensus 20 ~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (241)
T PRK10895 20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVY 96 (241)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHH
Confidence 4899999999999999999999999999999999984 7999999998753 1356799999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.+....... .........+.++++.+++.+..++. +..|||||||||+|||||+.+|++|||||||+
T Consensus 97 enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (241)
T PRK10895 97 DNLMAVLQIRDD--LSAEQREDRANELMEEFHIEHLRDSM--------GQSLSGGERRRVEIARALAANPKFILLDEPFA 166 (241)
T ss_pred HHHhhhhhcccc--cCHHHHHHHHHHHHHHcCCHHHhhcc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 999876432211 11223345678899999998777777 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.+.|++++ ++|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 167 ~LD~~~~~~l~~~l~~~~-~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 167 GVDPISVIDIKRIIEHLR-DSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred cCCHHHHHHHHHHHHHHH-hcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 999999999999999984 4589999999997 5788999999999999999999988654
No 105
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-47 Score=345.49 Aligned_cols=213 Identities=26% Similarity=0.404 Sum_probs=178.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCC-CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDL-FSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~-~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.+||+||++. .+...|
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 99 (283)
T PRK13636 23 KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS 99 (283)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcccc
Confidence 4899999999999999999999999999999999984 8999999998731 25678999999863 334579
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.++...... ......+++.++++.++|.+..++. +..||||||||++|||||+.+|++||||||
T Consensus 100 v~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LS~G~~qrl~laraL~~~p~lLilDEP 168 (283)
T PRK13636 100 VYQDVSFGAVNLKL---PEDEVRKRVDNALKRTGIEHLKDKP--------THCLSFGQKKRVAIAGVLVMEPKVLVLDEP 168 (283)
T ss_pred HHHHHHhHHHHcCC---CHHHHHHHHHHHHHHCCChhhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999886543221 2223335678899999999888888 556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCCCC
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCPY 231 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~~~ 231 (290)
|+|||+.++..++++|++++++.|+|||++||++ +++..+||++++|++|++++.|++++++. .+...+.++|.
T Consensus 169 t~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T PRK13636 169 TAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLPR 245 (283)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCc
Confidence 9999999999999999999655589999999997 47788999999999999999999988754 33345555443
No 106
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=5.9e-47 Score=339.67 Aligned_cols=202 Identities=27% Similarity=0.394 Sum_probs=173.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----------------cccccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----------------KFRSACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----------------~~~~~ig~v~ 66 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 93 (252)
T TIGR03005 17 DGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF 93 (252)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence 4899999999999999999999999999999999984 8999999998731 2356899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 67 Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
|++.+++.+||.||+.++...... .........+.++++.+|+.+..++. +..||||||||++|||||+.
T Consensus 94 q~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~laral~~ 163 (252)
T TIGR03005 94 QSFNLFPHKTVLDNVTEAPVLVLG--MARAEAEKRAMELLDMVGLADKADHM--------PAQLSGGQQQRVAIARALAM 163 (252)
T ss_pred cCcccCCCCcHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCChhHhhcC--------hhhcCHHHHHHHHHHHHHHc
Confidence 999999999999999875422110 11222334578899999998877777 55699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|++|||||||+|||+.++..+.+.|++++++.|.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 164 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 164 RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999998554589999999997 5788899999999999999999988653
No 107
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=7.7e-47 Score=339.99 Aligned_cols=200 Identities=26% Similarity=0.391 Sum_probs=172.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----------------cccccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----------------KFRSACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----------------~~~~~ig~v~ 66 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.++|++
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 98 (257)
T PRK10619 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF 98 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceEEEe
Confidence 4899999999999999999999999999999999984 7999999988641 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHHH-hcCchhhhHHHHHHHHHHHHHHcCCCCcc-CcccCCcCCCCCCCCChHHHHHHHHHHHH
Q psy2520 67 QHDLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQ-HTRIGSSSITQKVVLSGGERKRLSFATEL 144 (290)
Q Consensus 67 Q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~v~~~~~~~~~~LSgGqrqRv~ia~aL 144 (290)
|++.+++.+||+||+.++.. ... .......+++.++++.+|+.+.. ++. +.+||||||||++|||||
T Consensus 99 q~~~l~~~~sv~enl~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~~LS~G~~qrv~laral 167 (257)
T PRK10619 99 QHFNLWSHMTVLENVMEAPIQVLG---LSKQEARERAVKYLAKVGIDERAQGKY--------PVHLSGGQQQRVSIARAL 167 (257)
T ss_pred cCcccCCCCcHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCChhhhhCC--------cccCCHHHHHHHHHHHHH
Confidence 99999999999999987542 211 11223345678899999998764 666 456999999999999999
Q ss_pred HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 145 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 145 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.+|++|||||||+|||+.++..+.++|++++ +.|.|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 99999999999999999999999999999994 4589999999997 5788899999999999999999988653
No 108
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=6.6e-47 Score=331.33 Aligned_cols=196 Identities=26% Similarity=0.428 Sum_probs=169.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.++|++|++.+++.+|+.||+
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~ 91 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNI 91 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHH
Confidence 4899999999999999999999999999999999984 8999999998753 3567799999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+........ . .....++.++++.+++.+..++. +..||||||||++|||||+.+|+++||||||++||
T Consensus 92 ~~~~~~~~~~--~-~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 160 (213)
T TIGR01277 92 GLGLHPGLKL--N-AEQQEKVVDAAQQVGIADYLDRL--------PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160 (213)
T ss_pred HhHhhccCCc--c-HHHHHHHHHHHHHcCcHHHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 8754321110 1 12234567899999998888887 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
+.++..+.++|+++.++.|.|||++||++ .++.++||++++|++|+++..|+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 161 PLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999998554589999999997 47788999999999999998774
No 109
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-47 Score=340.56 Aligned_cols=197 Identities=30% Similarity=0.472 Sum_probs=170.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ....++|++|++.+++.+||.||+.+
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~-~~~~~~~v~q~~~~~~~~tv~e~l~~ 93 (255)
T PRK11248 18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG-PGAERGVVFQNEGLLPWRNVQDNVAF 93 (255)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCC-CCCcEEEEeCCCccCCCCcHHHHHHh
Confidence 5899999999999999999999999999999999984 8999999998753 33469999999989999999999988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
...... .......+++.++++.++|.+..++. +..|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 94 ~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~ 162 (255)
T PRK11248 94 GLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY--------IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAF 162 (255)
T ss_pred HHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 654321 11222334578899999998877777 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe--CCeEEEEcCHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAFIGSKD 216 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~--~G~i~~~g~~~ 216 (290)
++..+.++|++++++.|.|||++||++ .++..+||++++|+ +|+++..++.+
T Consensus 163 ~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 163 TREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999998554589999999997 57889999999998 59999877653
No 110
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-47 Score=332.63 Aligned_cols=192 Identities=29% Similarity=0.465 Sum_probs=166.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++| +++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+||.||
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF 92 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence 4899999999 99999999999999999999999984 8999999988753 346789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....... ...+..+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+||
T Consensus 93 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 161 (211)
T cd03264 93 LDYIAWLKGI---PSKEVKARVDEVLELVNLGDRAKKK--------IGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161 (211)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHCCCHHHHhCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 9986544321 1122234578899999998877877 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|
T Consensus 162 D~~~~~~l~~~l~~~~-~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 162 DPEERIRFRNLLSELG-E-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CHHHHHHHHHHHHHHh-C-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999994 4 48999999997 4678899999999999998754
No 111
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=5.5e-47 Score=333.15 Aligned_cols=191 Identities=29% Similarity=0.458 Sum_probs=163.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c---cc-ccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K---FR-SACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~---~~-~~ig~v~Q~~~~~~~l 75 (290)
.++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. . ++ +.++|++|++.+++.+
T Consensus 22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 4799999999999999999999999999999999984 8999999998743 1 22 5799999999899999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.+....+.. ......+.+.++++.+|+.+..++. +..|||||||||+|||||+.+|++|||||
T Consensus 99 tv~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 99 TALENVAMPLLIGKK---SVKEAKERAYEMLEKVGLEHRINHR--------PSELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred cHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 999999886543221 1122234567899999998888887 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 210 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~ 210 (290)
||+|||+.++..+.+.|++++++.|.|||++||++. ++ ..+|++++|++|+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 999999999999999999996555899999999974 55 458999999999875
No 112
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=9.4e-47 Score=334.15 Aligned_cols=204 Identities=26% Similarity=0.366 Sum_probs=171.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCCccEEEECCEecCc-cc-cccEEEEccCCC--CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD-CIIDGDIRVNGKPVEG-KF-RSACGFMYQHDL--FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~-~~~~G~I~i~G~~~~~-~~-~~~ig~v~Q~~~--~~~~lTv~ 78 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. ...+|+|+++|+++.. .. ++.++|++|++. +++.+|+.
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~ 82 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMG 82 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHH
Confidence 5899999999999999999999999999999999871 0027999999998754 22 357999999974 56778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC---CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLM---NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
+++.+........ . ....+++.++++.+++. +..++. +..|||||||||+|||||+.+|++|||||
T Consensus 83 ~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 83 NHAIETLRSLGKL--S-KQARALILEALEAVGLPDPEEVLKKY--------PFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred HHHHHHHHHcCcc--H-HHHHHHHHHHHHHcCCCchHHHHhCC--------hhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9998765432111 1 22345578899999997 455666 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+.+.|++++++.|+|||++||++ .++..+||++++|++|+++..|++++++
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999554589999999997 4788899999999999999999988664
No 113
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-47 Score=343.38 Aligned_cols=206 Identities=24% Similarity=0.377 Sum_probs=179.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC-C-CCCCccEEEECCEecCc-------cc-cccEEEEccCC--CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP-D-DCIIDGDIRVNGKPVEG-------KF-RSACGFMYQHD--LF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~-~-~~~~~G~I~i~G~~~~~-------~~-~~~ig~v~Q~~--~~ 71 (290)
.||||++++||++||+|.|||||||+.+.|+|+++ | ....+|+|.|+|+++.. ++ .+.|+|+||++ .|
T Consensus 22 ~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sL 101 (316)
T COG0444 22 DGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSL 101 (316)
T ss_pred eceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhc
Confidence 58999999999999999999999999999999997 4 33467999999998743 22 35799999996 68
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
.|.+||.+.+.-....+.... .+.+..+++.++|+.+||.+ ..+.+ +.+|||||||||.||.||+.+|
T Consensus 102 nPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y--------PhelSGGMrQRV~IAmala~~P 172 (316)
T COG0444 102 NPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY--------PHELSGGMRQRVMIAMALALNP 172 (316)
T ss_pred CChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC--------CcccCCcHHHHHHHHHHHhCCC
Confidence 899999999887766543211 23445667889999999975 45666 6679999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
++||.||||++||...+.+|+++|++++++.|+++|+||||+ ..+.++||||+||+.|++++.|++++++
T Consensus 173 ~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred CEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999999999999877899999999998 5899999999999999999999999876
No 114
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5.8e-47 Score=333.52 Aligned_cols=192 Identities=26% Similarity=0.370 Sum_probs=166.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+|
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (222)
T PRK10908 19 QGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRT 95 (222)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999984 8999999998743 14578999999998888999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+.||+.+....... ...+....+.++++.+++.+..++. +..||||||||++|||||+.+|++||||||
T Consensus 96 v~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 96 VYDNVAIPLIIAGA---SGDDIRRRVSAALDKVGLLDKAKNF--------PIQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred HHHHHHhHHHhcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------chhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999886543321 1222334567899999998877777 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
|+|||+.++..+.+.|+++++ .|.|||++||++ .++..+||++++|++|+++.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 165 TGNLDDALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999954 489999999997 57888999999999999753
No 115
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.2e-47 Score=331.63 Aligned_cols=189 Identities=29% Similarity=0.434 Sum_probs=162.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++. .++.+||.
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~ 94 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVE 94 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHH
Confidence 4899999999999999999999999999999999984 8999999998753 24578999999874 36678999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.+....... ........+.++++.+++.+..+++ +..|||||||||+|||||+.+|++|||||||+
T Consensus 95 ~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 95 EEVAFGLENLGL---PEEEIEERVEEALELVGLEGLRDRS--------PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHHHcCcHhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 999886543211 1122234577899999998877877 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
|||+.++..+++.|+++++ +|.|||++||++ .++..+||++++|++|+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 164 GLDPAGRRELLELLKKLKA-EGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999954 489999999997 57888999999999885
No 116
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-47 Score=340.16 Aligned_cols=201 Identities=31% Similarity=0.428 Sum_probs=172.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|+++|.++.. .+++.++|++|++.+++.+||+|
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 95 (258)
T PRK13548 19 DDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEE 95 (258)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHH
Confidence 4899999999999999999999999999999999984 8999999998743 24567999999988888899999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH------hCCCeEEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL------TDPALLLC 153 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~------~~p~llll 153 (290)
|+.+....... ........+.++++.+++.+..++. +.+|||||||||+|||||+ .+|++|||
T Consensus 96 ~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgGe~qrv~la~al~~~~~~~~~p~lllL 164 (258)
T PRK13548 96 VVAMGRAPHGL---SRAEDDALVAAALAQVDLAHLAGRD--------YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLL 164 (258)
T ss_pred HHHhhhcccCC---CcHHHHHHHHHHHHHcCCHhHhcCC--------cccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence 99886432111 1112234567899999998888888 4559999999999999999 59999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||+|||+.++..+.++|++++++.|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 165 DEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999999535689999999997 5788899999999999999999987654
No 117
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-47 Score=336.65 Aligned_cols=199 Identities=25% Similarity=0.380 Sum_probs=171.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC----------ccccccEEEEccCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----------GKFRSACGFMYQHDLFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~----------~~~~~~ig~v~Q~~~~~~ 73 (290)
.|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|+++. ..+++.++|+||++.+++
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 19 FDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 4899999999999999999999999999999999984 899999999862 024567999999999999
Q ss_pred CCCHHHHHHHHH-HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.+||.||+.++. ..... ........+.++++.+|+.+..++. +..||||||||++|||||+.+|+++|
T Consensus 96 ~~tv~e~i~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lli 164 (242)
T PRK11124 96 HLTVQQNLIEAPCRVLGL---SKDQALARAEKLLERLRLKPYADRF--------PLHLSGGQQQRVAIARALMMEPQVLL 164 (242)
T ss_pred CCcHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999997532 22111 1122335678899999998888887 45599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||||+|||+.++..+.+.|++++ ++|+|+|++||++ .++..+||++++|.+|++++.|+++++
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 165 FDEPTAALDPEITAQIVSIIRELA-ETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EcCCCCcCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999994 4589999999997 577889999999999999999988753
No 118
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-46 Score=339.99 Aligned_cols=211 Identities=25% Similarity=0.396 Sum_probs=176.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCC-CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDL-FSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~-~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.|+|+||++. .+...|
T Consensus 19 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (275)
T PRK13639 19 KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT 95 (275)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc
Confidence 5899999999999999999999999999999999984 7999999998741 24578999999862 333579
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|.||+.+...... ....+..+++.++++.++|.+..++. +.+||||||||++|||||+.+|+++|||||
T Consensus 96 v~e~i~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 96 VEEDVAFGPLNLG---LSKEEVEKRVKEALKAVGMEGFENKP--------PHHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999987643221 12223345678899999999888888 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCCC
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCP 230 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~~ 230 (290)
|+|||+.++..+++.|+++++ .|.|||++||++ .++..+||++++|++|+++..|++++++. .+...+.+.|
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNK-EGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKANLRLP 239 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcChHHHHhcCCCCC
Confidence 999999999999999999954 489999999997 57888999999999999999999998753 3334454433
No 119
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-47 Score=336.85 Aligned_cols=198 Identities=25% Similarity=0.363 Sum_probs=168.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.++||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||.
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (237)
T PRK11614 22 HEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE 98 (237)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHH
Confidence 4799999999999999999999999999999999984 7999999998753 1356799999999899999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHc-CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.+...... .......+.++++.+ ++.+..++. +..||||||||++|||||+.+|++|||||||
T Consensus 99 ~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~illlDEPt 165 (237)
T PRK11614 99 ENLAMGGFFAE-----RDQFQERIKWVYELFPRLHERRIQR--------AGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165 (237)
T ss_pred HHHHHhhhccC-----hhHHHHHHHHHHHHHHHHHHHHhCc--------hhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 99988542211 111123455667776 466666666 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.+.|++++ ++|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 166 ~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 166 LGLAPIIIQQIFDTIEQLR-EQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred ccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 9999999999999999985 4589999999997 5789999999999999999999998764
No 120
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-46 Score=340.69 Aligned_cols=200 Identities=26% Similarity=0.360 Sum_probs=171.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCC-CCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDL-FSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~-~~~~lTv 77 (290)
.|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|+++|.++.. .+++.+||++|++. .+...||
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 19 ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence 4899999999999999999999999999999999984 8999999998742 24567999999964 3666899
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
+||+.|...... .......+.+.++++.++|.+..++. +..|||||||||+|||||+.+|++|||||||
T Consensus 96 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 96 EEDLAFGPENLC---LPPIEIRKRVDRALAEIGLEKYRHRS--------PKTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred HHHHHhhHHHcC---CCHHHHHHHHHHHHHHCCCHHHhcCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 999988654321 12223335578899999998888887 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|||+.++..+++.|++++ +.|.|||++||++. ++ ..||++++|++|+++..|++++++.
T Consensus 165 ~gLD~~~~~~l~~~l~~l~-~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLH-EKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred ccCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999995 45899999999974 56 5799999999999999999987653
No 121
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=5.7e-47 Score=331.09 Aligned_cols=191 Identities=27% Similarity=0.442 Sum_probs=164.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~lTv 77 (290)
.++||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|++|++.+++.+|+
T Consensus 17 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (213)
T cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV 93 (213)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence 4899999999999999999999999999999999984 8999999998732 246789999999999999999
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
.||+.++...... .......+.+.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||||
T Consensus 94 ~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 94 LENITLAPIKVKG--MSKAEAEERALELLEKVGLADKADAY--------PAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred HHHHHhHHHHhcC--CCHHHHHHHHHHHHHHcCCHhHhhhC--------ccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999886431111 11222335578899999998877887 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
+|||+.++..+.+.|+++++ .|+|||++||++ .++.++||++++|++|++
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 164 SALDPELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999954 589999999997 578889999999999974
No 122
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.1e-46 Score=340.63 Aligned_cols=202 Identities=21% Similarity=0.292 Sum_probs=171.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. .+++.++|+||++ .+++.
T Consensus 28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 104 (265)
T TIGR02769 28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPR 104 (265)
T ss_pred eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCC
Confidence 4899999999999999999999999999999999984 8999999998753 1356799999986 46778
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||+||+.+...... .........++.++++.+++. ...++. +..|||||||||+|||||+.+|++|||
T Consensus 105 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~~LSgGe~qrv~laral~~~p~illL 174 (265)
T TIGR02769 105 MTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL--------PRQLSGGQLQRINIARALAVKPKLIVL 174 (265)
T ss_pred CCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999987543211 011122335578899999996 566777 455999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++||+.++..+.+.|++++++.|.|||++||++ ..+..+||++++|++|+++..|+++++.
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 175 DEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 9999999999999999999999554589999999997 5788899999999999999999998764
No 123
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-47 Score=330.34 Aligned_cols=191 Identities=31% Similarity=0.427 Sum_probs=166.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~lT 76 (290)
|+||++++ |+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 89999999 999999999999999999999999984 8999999998642 23567999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+.+|+.+...... .....+++.++++.+++.+..++. +.+||||||||++||+||+.+|++||||||
T Consensus 92 ~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEP 158 (214)
T cd03297 92 VRENLAFGLKRKR-----NREDRISVDELLDLLGLDHLLNRY--------PAQLSGGEKQRVALARALAAQPELLLLDEP 158 (214)
T ss_pred HHHHHHHHHhhCC-----HHHHHHHHHHHHHHcCCHhHhhcC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999987653221 112334578899999998777777 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+|||+.++..+.++|++++++.|.|||++||++ .++..+||++++|++|+++..|
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 159 FSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999654589999999997 5788899999999999998764
No 124
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-46 Score=335.27 Aligned_cols=202 Identities=25% Similarity=0.369 Sum_probs=172.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++.. ..++.++|+||++.+++.+||+
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 95 (242)
T TIGR03411 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF 95 (242)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHH
Confidence 4799999999999999999999999999999999984 8999999998753 1245699999999999999999
Q ss_pred HHHHHHHHhcCc--h---hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 79 EHLYFMALLKLD--R---RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 79 e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
||+.++...... . .........++.++++.+++.+..++. +..|||||||||+|||||+.+|++|||
T Consensus 96 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~Ge~qrv~laral~~~p~~lll 167 (242)
T TIGR03411 96 ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL--------AGLLSHGQKQWLEIGMLLMQDPKLLLL 167 (242)
T ss_pred HHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999886432100 0 001122345678899999998888887 455999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||+|||+.++..+++.|++++ + ++|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 168 DEPVAGMTDEETEKTAELLKSLA-G-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred cCCccCCCHHHHHHHHHHHHHHh-c-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999994 4 68999999997 5788899999999999999999988653
No 125
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.2e-47 Score=332.99 Aligned_cols=195 Identities=31% Similarity=0.458 Sum_probs=162.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCC--CCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS--PSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~--~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++. .+++.++|+||++.++ +.+||+||+
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~e~l 91 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPISVRDVV 91 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH-HHHhheEEeccccccccCCCCcHHHHH
Confidence 4799999999999999999999999999999999984 899999998764 3566899999997653 347999999
Q ss_pred HHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.+........ ........+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 163 (213)
T cd03235 92 LMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ--------IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGV 163 (213)
T ss_pred HhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 8854321100 001112234578899999998777877 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+.++..+.+.|+++++ .|.|||++||++ .++.++||++++|++| +++.|
T Consensus 164 D~~~~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 164 DPKTQEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999954 589999999997 5788899999999876 55543
No 126
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-47 Score=340.72 Aligned_cols=191 Identities=27% Similarity=0.396 Sum_probs=168.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++. .+++.++|++|++.+++.+||+||+.+
T Consensus 29 ~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~ 104 (257)
T PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLA-EAREDTRLMFQDARLLPWKKVIDNVGL 104 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHH-HhhCceEEEecCccCCCCCcHHHHHHh
Confidence 4799999999999999999999999999999999984 899999998763 356789999999989998999999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
... . . ....+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 105 ~~~--~--~-----~~~~~~~~l~~~gl~~~~~~~--------~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~ 167 (257)
T PRK11247 105 GLK--G--Q-----WRDAALQALAAVGLADRANEW--------PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL 167 (257)
T ss_pred ccc--c--h-----HHHHHHHHHHHcCChhHhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 531 0 0 123467899999998888887 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
++..+.++|++++++.|.|||++||++ .++..+||++++|++|+++..++.+
T Consensus 168 ~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 168 TRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999998555689999999997 4788899999999999999887654
No 127
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-46 Score=340.62 Aligned_cols=200 Identities=22% Similarity=0.299 Sum_probs=170.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCC-CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDL-FSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~-~~~~lT 76 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|+||++. .+...|
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 94 (271)
T PRK13638 18 KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTD 94 (271)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccccc
Confidence 4899999999999999999999999999999999984 8999999998741 24567999999865 234568
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+.+|+.+....... ......+.+.++++.+++.+..++. +..||||||||++|||||+.+|++||||||
T Consensus 95 ~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 95 IDSDIAFSLRNLGV---PEAEITRRVDEALTLVDAQHFRHQP--------IQCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHhHhcCC--------chhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999886443211 1222234567899999998888877 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+.++|++++ +.|.|||++||++ .++..+||++++|++|+++..|++++++
T Consensus 164 t~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 164 TAGLDPAGRTQMIAIIRRIV-AQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred cccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999995 4589999999997 5788899999999999999999998765
No 128
>KOG0065|consensus
Probab=100.00 E-value=5.2e-48 Score=395.59 Aligned_cols=264 Identities=33% Similarity=0.566 Sum_probs=237.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC-ccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-GKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~-~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|||+.++||-++||||+|||||||||++|+|+... +.++|+|+++|.+.. ..+++.+|||.|+|.+.+.+||+|.|.
T Consensus 808 ~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~ 886 (1391)
T KOG0065|consen 808 NNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLR 886 (1391)
T ss_pred hcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHH
Confidence 489999999999999999999999999999999754 347999999999998 468999999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC-CeEEEeCCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP-ALLLCDEPTTGLD 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p-~llllDEPtsgLD 161 (290)
|.+.+|.+..++..++.+.++++++.++|.+.++..||.++ .+||..||||+.||..|+.+| .||+|||||||||
T Consensus 887 fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G----~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLD 962 (1391)
T KOG0065|consen 887 FSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG----SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962 (1391)
T ss_pred HHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC----CCCCHHHhceeeEEEEEecCCceeEEecCCCCCcc
Confidence 99999988888888888999999999999999999999874 469999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe-CCeEEEEcCHHH----HHHHHHHCC-CCCCCCCCh
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DSRTAFIGSKDA----ALAFLESQG-YPCPYGYNP 235 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~-~G~i~~~g~~~~----~~~~~~~~g-~~~~~~~~~ 235 (290)
..++-.+++++++++ +.|+||+++.|||+..+++.||++++|+ .|+.+|.|+..+ +++||++.+ .+||...||
T Consensus 963 sqaA~~i~~~lrkla-~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NP 1041 (1391)
T KOG0065|consen 963 SQAAAIVMRFLRKLA-DTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENP 1041 (1391)
T ss_pred HHHHHHHHHHHHHHH-hcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCCh
Confidence 999999999999995 5799999999999999999999999998 689999998754 667999876 789988899
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHHHhhhchhHHhHhhhhh
Q psy2520 236 ADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEIN 278 (290)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 278 (290)
++++.++.....+.+ .-..+++.|+.|+.++++-++++
T Consensus 1042 A~~mLevi~~~~~~~-----~~~D~a~~w~~S~e~k~~~e~v~ 1079 (1391)
T KOG0065|consen 1042 AEWMLEVIGAGAEAS-----LSVDFAEIWKNSEEYKRNKELVK 1079 (1391)
T ss_pred HHHHHhhcccccccc-----cCccHHHHHhccHHHHHHHHHHH
Confidence 999999876433322 22367899999999999988875
No 129
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-46 Score=333.42 Aligned_cols=197 Identities=25% Similarity=0.361 Sum_probs=168.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.++.. ..++.++|+||++.+++.+|+.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE 93 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence 5899999999999999999999999999999999984 8999999998753 1346799999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELG-LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.++...... .. .+.+.++++.++ +.+..++. +.+||||||||++|||||+.+|+++||||||
T Consensus 94 ~~l~~~~~~~~~---~~---~~~~~~~l~~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 94 ENLLTGLAALPR---RS---RKIPDEIYELFPVLKEMLGRR--------GGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred HHHHHHHHhcCc---ch---HHHHHHHHHHHHhHHHHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999886543211 11 123456677776 55666777 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
+|||+.++..+.++|.+++++.|+|||++||++ .++..+||++++|++|+++..|+++++
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999998554589999999997 578889999999999999999998765
No 130
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-46 Score=339.52 Aligned_cols=200 Identities=21% Similarity=0.289 Sum_probs=172.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.++|++|++. +++..|+.
T Consensus 26 ~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 102 (269)
T PRK13648 26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence 5899999999999999999999999999999999984 8999999998753 35678999999974 67778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
+|+.|....... ......+.+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 103 ~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 171 (269)
T PRK13648 103 YDVAFGLENHAV---PYDEMHRRVSEALKQVDMLERADYE--------PNALSGGQKQRVAIAGVLALNPSVIILDEATS 171 (269)
T ss_pred HHHHhhHHhcCC---CHHHHHHHHHHHHHHcCCchhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999886543221 1222334577899999998888887 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+++.|++++++.|.|||++||++. ++. .||++++|++|+++..|+++++.
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 172 MLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999985545899999999974 665 49999999999999999998764
No 131
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-47 Score=341.47 Aligned_cols=204 Identities=24% Similarity=0.322 Sum_probs=173.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|+||++.+++.+||.|
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (265)
T PRK10575 28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE 104 (265)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHH
Confidence 5799999999999999999999999999999999984 7999999998743 34567999999988888999999
Q ss_pred HHHHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.+....... ...........+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~laral~~~p~lllLDEPt~ 176 (265)
T PRK10575 105 LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL--------VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99875321100 0000112234577899999998877887 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.+.|++++++.|.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 177 ~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 177 ALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999554589999999997 5788999999999999999999887653
No 132
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=339.83 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=173.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---------cccccEEEEccCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---------KFRSACGFMYQHDLFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---------~~~~~ig~v~Q~~~~~~~ 74 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|+...+|+|+++|+++.. .+++.++|+||++.+++.
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 100 (262)
T PRK09984 21 HAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNR 100 (262)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccC
Confidence 58999999999999999999999999999999998852236999999998742 235679999999999999
Q ss_pred CCHHHHHHHHHHhcCch-----hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 75 LTVYEHLYFMALLKLDR-----RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
+||+||+.+......+. .........++.++++.+++.+..++. +..|||||||||+|||||+.+|+
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ 172 (262)
T PRK09984 101 LSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR--------VSTLSGGQQQRVAIARALMQQAK 172 (262)
T ss_pred CcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC--------ccccCHHHHHHHHHHHHHhcCCC
Confidence 99999998754211000 000122335678899999998878887 45599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
+|||||||+|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 173 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999999655589999999997 468899999999999999999998753
No 133
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-46 Score=341.94 Aligned_cols=204 Identities=24% Similarity=0.392 Sum_probs=173.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|....+|+|+++|+++.. ..++.+||+||++. +++.+||+
T Consensus 24 ~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~ 103 (282)
T PRK13640 24 NDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVG 103 (282)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHH
Confidence 48999999999999999999999999999999998841113999999999853 24568999999974 67778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.|...... ....+..+++.++++.++|.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 104 enl~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~--------~~~LS~G~~qrv~laral~~~P~llllDEPt~ 172 (282)
T PRK13640 104 DDVAFGLENRA---VPRPEMIKIVRDVLADVGMLDYIDSE--------PANLSGGQKQRVAIAGILAVEPKIIILDESTS 172 (282)
T ss_pred HHHHhhHHhCC---CCHHHHHHHHHHHHHHCCChhHhcCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 99988653321 12233345678899999999888888 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||+.++..+.+.|++++++.|.|||++||++. ++ .+||++++|++|++++.|++++++.
T Consensus 173 gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 173 MLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999995545899999999974 55 5899999999999999999987753
No 134
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-46 Score=335.53 Aligned_cols=204 Identities=24% Similarity=0.332 Sum_probs=171.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv 77 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. ..++|+|.++|+++.. .+++.+||+||++.+++.+||
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 99 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSI 99 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcH
Confidence 4899999999999999999999999999999998741 1147999999998753 356789999999888899999
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
.||+.++....... ....+..+.+.++++.+++.+ ..++. +.+|||||||||+|||||+.+|++|||
T Consensus 100 ~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgG~~qrv~laral~~~p~lllL 170 (250)
T PRK14247 100 FENVALGLKLNRLV-KSKKELQERVRWALEKAQLWDEVKDRLDAP--------AGKLSGGQQQRLCIARALAFQPEVLLA 170 (250)
T ss_pred HHHHHHHHHhcccc-CCHHHHHHHHHHHHHHcCCCcchhhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999865432110 112233456788999999854 34555 456999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||+|||+.++..+.+.|+++ .+ |.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 171 DEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 171 DEPTANLDPENTAKIESLFLEL-KK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred cCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999999999999999999998 44 78999999997 4778899999999999999999998664
No 135
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-46 Score=348.96 Aligned_cols=207 Identities=21% Similarity=0.275 Sum_probs=171.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCCccEEEECCEecCc----c----ccccEEEEccCCC--CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD-CIIDGDIRVNGKPVEG----K----FRSACGFMYQHDL--FS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~-~~~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~~--~~ 72 (290)
.||||+|.+||+++|+|+||||||||+++|+|+++|. ..++|+|+++|+++.. . .++.|+||||++. +.
T Consensus 24 ~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~ 103 (330)
T PRK15093 24 DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLD 103 (330)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcC
Confidence 5899999999999999999999999999999998742 1248999999998753 1 1357999999974 67
Q ss_pred CCCCHHHHHHHHHHhcC--chh-hhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 73 PSLTVYEHLYFMALLKL--DRR-VKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
+.+||.+++.+...... ... ....+..+++.++++.+||.+ ..++. +.+|||||||||+|||||+.
T Consensus 104 p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~--------p~~LSgG~~QRv~iArAL~~ 175 (330)
T PRK15093 104 PSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF--------PYELTEGECQKVMIAIALAN 175 (330)
T ss_pred ccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC--------chhCCHHHHHHHHHHHHHHC
Confidence 88999999986432111 000 011223456789999999975 34566 56699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|++|||||||++||+.++.+++++|++++++.|.|||+||||+ ..+.++||++++|++|++++.|++++++
T Consensus 176 ~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 176 QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999655689999999997 5788999999999999999999998765
No 136
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-47 Score=340.89 Aligned_cols=204 Identities=24% Similarity=0.317 Sum_probs=173.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++.+|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+||+|
T Consensus 24 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 100 (265)
T PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQE 100 (265)
T ss_pred eecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHH
Confidence 4899999999999999999999999999999999984 7999999998753 24567999999999898999999
Q ss_pred HHHHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.++...... ...........+.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||||+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~llllDEPt~ 172 (265)
T PRK10253 101 LVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS--------VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTT 172 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC--------cccCChHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 99875211100 0000112234577899999998878887 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.+.|++++++.|.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 173 gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 173 WLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999554589999999997 5789999999999999999999988764
No 137
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-46 Score=339.42 Aligned_cols=201 Identities=21% Similarity=0.344 Sum_probs=172.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCC-CCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDL-FSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~-~~~~lTv 77 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.+||+||++. .+...||
T Consensus 27 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 103 (280)
T PRK13633 27 DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV 103 (280)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence 4799999999999999999999999999999999984 8999999998753 24678999999863 2334699
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
.+|+.|+...... ......+.+.++++.+||.+..++. +..|||||||||+|||+|+.+|+++||||||
T Consensus 104 ~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt 172 (280)
T PRK13633 104 EEDVAFGPENLGI---PPEEIRERVDESLKKVGMYEYRRHA--------PHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172 (280)
T ss_pred HHHHHhhHhhcCC---CHHHHHHHHHHHHHHCCCHhHhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9999987543221 2223345678899999999888888 5569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|||+.++..+.+.|++++++.|.|||++||++. ++.. ||++++|++|+++..|+++++..
T Consensus 173 ~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999995545899999999974 5654 99999999999999999988753
No 138
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-46 Score=341.08 Aligned_cols=200 Identities=23% Similarity=0.358 Sum_probs=170.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHD--LFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~--~~~~ 73 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. .+++.++|+||++ .+++
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence 5899999999999999999999999999999999984 8999999998742 2456799999986 4454
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.||+||+.+....... ......+.+.++++.++|. ...++. +.+||||||||++|||||+.+|++||
T Consensus 101 -~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 101 -ETVLKDVAFGPQNFGV---SQEEAEALAREKLALVGISESLFEKN--------PFELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred -ccHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCChhhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6999999886543211 1222334567889999997 456777 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||+|||+.++..+.+.|+++++ .|.|||++||++ .++..+||++++|++|+++..|++++++.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999954 589999999997 57888999999999999999999987643
No 139
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=334.69 Aligned_cols=196 Identities=25% Similarity=0.355 Sum_probs=169.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++.+|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++ .||+|
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 95 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKD 95 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHH
Confidence 4899999999999999999999999999999999984 8999999998743 34678999999988886 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.+...... . ...++.++++.+++. +..++. +.+||||||||++|||||+.+|++|||||||+
T Consensus 96 ~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 160 (241)
T PRK14250 96 NIEYGPMLKG----E---KNVDVEYYLSIVGLNKEYATRD--------VKNLSGGEAQRVSIARTLANNPEVLLLDEPTS 160 (241)
T ss_pred HHhcchhhcC----c---HHHHHHHHHHHcCCCHHHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9987543221 1 123467889999996 466666 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|+++..|++.+++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 161 ALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999998554589999999997 4788899999999999999999988653
No 140
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.3e-46 Score=329.93 Aligned_cols=193 Identities=27% Similarity=0.380 Sum_probs=169.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.++....++.++|+||++.+++.+|++||+.+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~ 93 (223)
T TIGR03740 17 NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKV 93 (223)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHH
Confidence 4799999999999999999999999999999999984 8999999998754323579999999988999999999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....... . ...+.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 94 ~~~~~~~---~----~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~ 158 (223)
T TIGR03740 94 HTTLLGL---P----DSRIDEVLNIVDLTNTGKKK--------AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI 158 (223)
T ss_pred HHHHcCC---C----HHHHHHHHHHcCCcHHHhhh--------HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHH
Confidence 6543221 1 13467889999998888887 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
++..+++.|++++ +.|.|||++||++ .++..+||++++|++|+++..|++.
T Consensus 159 ~~~~l~~~L~~~~-~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 159 GIQELRELIRSFP-EQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHHHH-HCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999994 4589999999997 5788899999999999999998875
No 141
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-46 Score=336.24 Aligned_cols=201 Identities=20% Similarity=0.356 Sum_probs=169.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|.. .++|+|.++|+++.. .+++.++|+||++.+++ +
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~ 107 (258)
T PRK14268 29 KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-M 107 (258)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-c
Confidence 48999999999999999999999999999999987510 147999999998742 24567999999988887 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.|....... ......+.+.++++.+++. +..++. +..|||||||||+|||||+.+|++|
T Consensus 108 tv~enl~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgG~~qrv~laral~~~p~ll 176 (258)
T PRK14268 108 SIYDNVAYGPRIHGA---NKKDLDGVVENALRSAALWDETSDRLKSP--------ALSLSGGQQQRLCIARTLAVKPKII 176 (258)
T ss_pred cHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCCcchhhhhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999987543221 1122234567899999884 344555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..++++|+++ ++ +.|||++||++ .++.++||++++|++|++++.|++++++
T Consensus 177 llDEPt~~LD~~~~~~l~~~l~~l-~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 177 LFDEPTSALDPISTARIEDLIMNL-KK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHH-hh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999998 44 78999999997 5788899999999999999999998653
No 142
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-46 Score=338.73 Aligned_cols=200 Identities=26% Similarity=0.393 Sum_probs=171.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.++|++|++. .++.+||+
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 102 (271)
T PRK13632 26 KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVE 102 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHH
Confidence 5799999999999999999999999999999999984 8999999999853 35678999999963 67778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...... ........+.++++.++|.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 103 enl~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~lllLDEP~~ 171 (271)
T PRK13632 103 DDIAFGLENKKV---PPKKMKDIIDDLAKKVGMEDYLDKE--------PQNLSGGQKQRVAIASVLALNPEIIIFDESTS 171 (271)
T ss_pred HHHHhHHHHcCC---CHHHHHHHHHHHHHHcCCHHHhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999886543211 1222334578899999998888888 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..++++|++++++.+.|||++||++. ++ ..||++++|++|+++..|+++++.
T Consensus 172 gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999995444589999999974 55 489999999999999999988764
No 143
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.6e-46 Score=330.51 Aligned_cols=192 Identities=27% Similarity=0.412 Sum_probs=165.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-------c-cccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-------F-RSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-------~-~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... . ++.++|+||++.+++.+
T Consensus 27 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 27 TGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 4799999999999999999999999999999999984 89999999987531 1 25799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||.||+.+....+.. ......+++.++++.+++.+..++. +..||||||||++|||||+.+|++|||||
T Consensus 104 tv~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~Ge~qrl~la~al~~~p~llllDE 172 (228)
T PRK10584 104 NALENVELPALLRGE---SSRQSRNGAKALLEQLGLGKRLDHL--------PAQLSGGEQQRVALARAFNGRPDVLFADE 172 (228)
T ss_pred CHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCHhHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999886533211 1223345678899999998887877 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
||+|||+.++..+.+.|++++++.|.|||++||++. ++ ..||++++|++|+++.
T Consensus 173 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 173 PTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 999999999999999999995555899999999974 55 5699999999999874
No 144
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-46 Score=331.28 Aligned_cols=201 Identities=24% Similarity=0.392 Sum_probs=174.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|. +|+|+++|.++.. ..++.++|++|++.+++.+|+.||+
T Consensus 16 ~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 4899999999999999999999999999999999994 7999999998754 2356899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+...... .......+.+.++++.++|.+..++. +.+||||||||++|||||+.+|+++||||||+|||
T Consensus 93 ~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD 161 (235)
T cd03299 93 AYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNRK--------PETLSGGEQQRVAIARALVVNPKILLLDEPFSALD 161 (235)
T ss_pred HHHHHHcC---CCHHHHHHHHHHHHHHcCChhHHhcC--------cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCC
Confidence 88653321 11222334567899999998888888 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+.+.|++++.+.|.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 162 ~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 162 VRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999998554589999999997 5788899999999999999999887553
No 145
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-46 Score=337.92 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=172.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+|++|
T Consensus 19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 95 (255)
T PRK11231 19 NDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRE 95 (255)
T ss_pred eeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHH
Confidence 4799999999999999999999999999999999984 8999999998743 24567999999988888899999
Q ss_pred HHHHHHHhc--CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.++.... ...... ......+.++++.+++.+..++. +..|||||||||+|||||+.+|++|||||||
T Consensus 96 ~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEP~ 166 (255)
T PRK11231 96 LVAYGRSPWLSLWGRLS-AEDNARVNQAMEQTRINHLADRR--------LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPT 166 (255)
T ss_pred HHHhccchhhhhccCCC-HHHHHHHHHHHHHcCCHHHHcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 998753110 000001 12234567899999998888887 5569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.+.|+++++ .|.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 167 ~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 167 TYLDINHQVELMRLMRELNT-QGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 99999999999999999844 589999999997 5788999999999999999999887653
No 146
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2e-46 Score=337.11 Aligned_cols=203 Identities=27% Similarity=0.361 Sum_probs=172.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||.|
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (256)
T TIGR03873 18 DGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD 94 (256)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH
Confidence 4899999999999999999999999999999999984 8999999998753 24567999999987788899999
Q ss_pred HHHHHHHhc-CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLK-LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.++.... ...........+++.++++.+++.+..++. +..||||||||++|||||+.+|+++||||||+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 166 (256)
T TIGR03873 95 VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD--------MSTLSGGERQRVHVARALAQEPKLLLLDEPTN 166 (256)
T ss_pred HHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 998853211 000001112234578899999998888887 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.++|++++ ++|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 167 ~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 167 HLDVRAQLETLALVRELA-ATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred cCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 999999999999999994 4589999999997 4788999999999999999999988653
No 147
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-46 Score=337.29 Aligned_cols=201 Identities=20% Similarity=0.330 Sum_probs=173.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.+||+||++. +++..||.
T Consensus 24 ~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 24 NGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 5899999999999999999999999999999999984 8999999998753 35678999999963 67778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...... ......+++.++++.++|.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 101 eni~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~lAraL~~~p~llllDEPt~ 169 (277)
T PRK13642 101 DDVAFGMENQGI---PREEMIKRVDEALLAVNMLDFKTRE--------PARLSGGQKQRVAVAGIIALRPEIIILDESTS 169 (277)
T ss_pred HHHHhhHHHcCC---CHHHHHHHHHHHHHHCCCHhHhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999886543211 1222334578899999998888887 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||+.++..+.++|++++++.|.|||++||++. ++. .||++++|++|+++..|++++++.
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 170 MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999996545899999999974 554 699999999999999999987653
No 148
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-46 Score=334.84 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=170.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecC--c----cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVE--G----KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~--~----~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ ...+|+|+++|+++. . .+++.++|+||++.+++.+
T Consensus 21 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (253)
T PRK14267 21 KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHL 100 (253)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCC
Confidence 5899999999999999999999999999999999873 113799999999874 1 2456899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.++...+... .........+.++++.+++.. ..++. +.+||||||||++|||||+.+|++|
T Consensus 101 tv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 171 (253)
T PRK14267 101 TIYDNVAIGVKLNGLV-KSKKELDERVEWALKKAALWDEVKDRLNDY--------PSNLSGGQRQRLVIARALAMKPKIL 171 (253)
T ss_pred cHHHHHHHHHHhcCcc-CCHHHHHHHHHHHHHHcCCccchhhhhccC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998865432110 011222345678888888743 34555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ + ++|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 172 llDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 172 LMDEPTANIDPVGTAKIEELLFELK-K-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHh-h-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999984 4 58999999997 4788899999999999999999988654
No 149
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-46 Score=335.00 Aligned_cols=202 Identities=23% Similarity=0.360 Sum_probs=169.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|.. .++|+|+++|+++.. .+++.++|++|++.+++ +
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~ 102 (254)
T PRK14273 24 NNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-M 102 (254)
T ss_pred cceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-C
Confidence 58999999999999999999999999999999998631 137999999998742 24678999999988775 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++...... .......+.+.++++.+++. +..++. +.+|||||||||+|||||+.+|++|
T Consensus 103 tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LSgG~~qrv~laral~~~p~ll 172 (254)
T PRK14273 103 SIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTN--------ALSLSGGQQQRLCIARTLAIEPNVI 172 (254)
T ss_pred cHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCC--------cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999987543211 11122234567888888873 345665 5669999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..++++|+++ ++ +.|||++||++ .++..+||++++|++|+++..|++++++
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 173 LMDEPTSALDPISTGKIEELIINL-KE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHH-hc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 68999999997 4788899999999999999999988764
No 150
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.3e-46 Score=337.86 Aligned_cols=202 Identities=23% Similarity=0.361 Sum_probs=171.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC--CCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL--FSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~--~~~~lTv 77 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++.. ..++.++|+||++. +++.+||
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 4899999999999999999999999999999999994 8999999998753 23457999999864 6778899
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
.+++.+....... .......+.+.++++.+++. +..++. +.+|||||||||+||+||+.+|++||||||
T Consensus 107 ~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (267)
T PRK15112 107 SQILDFPLRLNTD--LEPEQREKQIIETLRQVGLLPDHASYY--------PHMLAPGQKQRLGLARALILRPKVIIADEA 176 (267)
T ss_pred HHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCCChHHHhcC--------chhcCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 9999876543311 11222334578899999994 566666 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999999999654589999999997 5788899999999999999999888654
No 151
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-46 Score=341.45 Aligned_cols=201 Identities=20% Similarity=0.342 Sum_probs=169.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---------cccccEEEEccCCCC-CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---------KFRSACGFMYQHDLF-SP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---------~~~~~ig~v~Q~~~~-~~ 73 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++.. +.
T Consensus 28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 5899999999999999999999999999999999984 8999999998631 245679999998632 22
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
..||.||+.|....... ......+.+.++++.++|. +..++. +..|||||||||+|||||+.+|++||
T Consensus 105 ~~tv~enl~~~~~~~~~---~~~~~~~~~~~ll~~~~L~~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~lLl 173 (289)
T PRK13645 105 QETIEKDIAFGPVNLGE---NKQEAYKKVPELLKLVQLPEDYVKRS--------PFELSGGQKRRVALAGIIAMDGNTLV 173 (289)
T ss_pred hhHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCChhHhcCC--------hhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 46999999886532211 1222334567889999994 567777 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..++++|++++++.|+|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 174 LDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999998554589999999997 4788999999999999999999988765
No 152
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4.7e-46 Score=331.54 Aligned_cols=202 Identities=23% Similarity=0.257 Sum_probs=168.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++.. . .+..++|++|++.+++.+|
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (243)
T TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVS 93 (243)
T ss_pred eccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCCHHHhhccceEeeeccccccCCcC
Confidence 5899999999999999999999999999999995 56 48999999998753 1 2345999999999999999
Q ss_pred HHHHHHHHHHhcCch----hhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCC-CCChHHHHHHHHHHHHHhCCCe
Q psy2520 77 VYEHLYFMALLKLDR----RVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKV-VLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 77 v~e~l~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~-~LSgGqrqRv~ia~aL~~~p~l 150 (290)
+.|++.+........ ........+.+.++++.+++. ...++. +. .|||||||||+|||||+.+|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~~LS~G~~qrl~la~al~~~p~l 165 (243)
T TIGR01978 94 NLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS--------VNEGFSGGEKKRNEILQMALLEPKL 165 (243)
T ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc--------cccCcCHHHHHHHHHHHHHhcCCCE
Confidence 999998765321100 011222335678899999997 455666 33 3999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCeEEEEcCHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||||||++||+.++..+.++|++++ +.|.|||++||++ .++..+ ||++++|++|+++..|+++++
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 166 AILDEIDSGLDIDALKIVAEGINRLR-EPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHH-HCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 99999999999999999999999994 4589999999997 467777 899999999999999998754
No 153
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.4e-46 Score=331.26 Aligned_cols=195 Identities=28% Similarity=0.387 Sum_probs=167.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEc-cCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMY-QHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~-Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|++ |++.+++.+||.|
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e 114 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID 114 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHH
Confidence 4799999999999999999999999999999999984 8999999987642 3566899998 5567888899999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.+....... ......+.+.++++.+++.+..++. +..||||||||++||+||+.+|++|||||||+|
T Consensus 115 ~l~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 115 SFYLLAAIYDL---PPARFKKRLDELSELLDLEELLDTP--------VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHcCChhHhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 99886544321 1122234567889999998888887 455999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
||+.++..+.++|++++++.+.|||++||++ .++..+||++++|.+|++++.|
T Consensus 184 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 184 LDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999655589999999997 4788899999999999998754
No 154
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-46 Score=328.84 Aligned_cols=201 Identities=24% Similarity=0.361 Sum_probs=174.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.++|++|++.+++.+|+.+|+
T Consensus 17 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl 93 (232)
T cd03300 17 DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENI 93 (232)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHH
Confidence 4899999999999999999999999999999999984 7999999998754 2356799999999999899999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+....+.. ......+.+.++++.+++.+..++. +..||+|||||++|||||+.+|+++||||||+|||
T Consensus 94 ~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD 162 (232)
T cd03300 94 AFGLRLKKL---PKAEIKERVAEALDLVQLEGYANRK--------PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162 (232)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 886543321 1122334567899999998888887 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+.+.|++++++.|.|||++||++ .++.++||++++|++|++++.|+.+++.
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 163 LKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999554589999999997 5788999999999999999999887553
No 155
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-46 Score=332.81 Aligned_cols=202 Identities=22% Similarity=0.378 Sum_probs=167.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+.+ |...++|+|.++|+++.. .+++.++|++|++.+++ .
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~ 101 (253)
T PRK14242 23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-K 101 (253)
T ss_pred cceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-C
Confidence 58999999999999999999999999999999864 100147999999998742 24578999999988887 5
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.++....... ......+++.++++.+++.+ ..++. +..|||||||||+|||||+.+|++|
T Consensus 102 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgGq~qrv~laral~~~p~ll 171 (253)
T PRK14242 102 SIFENVAYGLRVNGVK--DKAYLAERVERSLRHAALWDEVKDRLHES--------ALGLSGGQQQRLCIARALAVEPEVL 171 (253)
T ss_pred cHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCchhhhHHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999875432211 11222345678899999854 23555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~-~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 172 LMDEPASALDPIATQKIEELIHEL-KA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH-hc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 68999999997 5788999999999999999999988653
No 156
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-46 Score=330.98 Aligned_cols=203 Identities=26% Similarity=0.406 Sum_probs=169.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|....+|+|.++|+++.. .+++.++|+||++.+++ .||+|
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~e 97 (246)
T PRK14269 19 FDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYE 97 (246)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHH
Confidence 48999999999999999999999999999999975211148999999998853 34678999999988887 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|+.++...+.... ......+++.++++.+++.+ ..++. +.+|||||||||+|||||+.+|+++||||
T Consensus 98 ni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lllLDE 168 (246)
T PRK14269 98 NISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQN--------ALALSGGQQQRLCIARALAIKPKLLLLDE 168 (246)
T ss_pred HhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9998654321100 11223345678999999953 34555 45699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+.+.|+++ .+ |+|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 169 P~~~LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 169 PTSALDPISSGVIEELLKEL-SH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred CcccCCHHHHHHHHHHHHHH-hC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999998 44 78999999997 5788899999999999999999988654
No 157
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5.2e-46 Score=330.41 Aligned_cols=200 Identities=27% Similarity=0.396 Sum_probs=161.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|+||++.+++ .||.|
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 94 (237)
T cd03252 19 DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRD 94 (237)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHH
Confidence 5899999999999999999999999999999999984 8999999998743 24677999999987775 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.+..................+.++++.+ ++....++. +.+|||||||||+|||||+.+|++|||||||
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--------~~~LSgG~~qrv~laral~~~p~llllDEP~ 166 (237)
T cd03252 95 NIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ--------GAGLSGGQRQRIAIARALIHNPRILIFDEAT 166 (237)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC--------CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 998743211000001001111234455555 455555555 5569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.+.|+++ ++ |+|||++||++. ++ ..||++++|++|++++.|++++++
T Consensus 167 ~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 167 SALDYESEHAIMRNMHDI-CA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred ccCCHHHHHHHHHHHHHh-cC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999 44 899999999974 55 579999999999999999988654
No 158
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.5e-45 Score=328.01 Aligned_cols=201 Identities=29% Similarity=0.437 Sum_probs=174.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|. +|+|.++|.++.. ..++.++|+||++.+++.+|+.||+
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 93 (237)
T TIGR00968 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI 93 (237)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence 4899999999999999999999999999999999884 7999999998754 2356799999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+....+.. ......+.+.++++.+++.+..++. +..||+||+||++|||+|+.+|+++||||||+|||
T Consensus 94 ~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 94 AFGLEIRKH---PKAKIKARVEELLELVQLEGLGDRY--------PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred HhHHHhcCC---CHHHHHHHHHHHHHHcCCHhHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 886543321 1122235568899999998878877 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+.+.|++++.+.++|||++||++ .++.++||++++|++|+++..|+.+++.
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 163 AKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 99999999999998544489999999997 5788999999999999999999988654
No 159
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=331.32 Aligned_cols=202 Identities=23% Similarity=0.399 Sum_probs=168.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++ |...++|+|+++|+++.. .+++.+||+||++.+++.
T Consensus 29 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~- 107 (259)
T PRK14274 29 KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ- 107 (259)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-
Confidence 48999999999999999999999999999999987 321137999999998742 245789999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.+....... ....+..+++.++++.+++.+ ..++. +.+||||||||++|||+|+.+|++|
T Consensus 108 tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--------~~~LS~Gq~qrv~laral~~~p~ll 177 (259)
T PRK14274 108 SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--------ALSLSGGQQQRLCIARALATNPDVL 177 (259)
T ss_pred CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhhhCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999886543211 111223345678888988853 34555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ +.|+|++||++ .++.++||++++|++|+++..|++++++
T Consensus 178 llDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 178 LMDEPTSALDPVSTRKIEELILKL-KE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHH-hc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999 44 68999999997 4788899999999999999999998764
No 160
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-45 Score=331.74 Aligned_cols=202 Identities=24% Similarity=0.373 Sum_probs=168.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++ |...++|+|.++|+++.. .+++.++|+||++.+++ .
T Consensus 30 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 108 (260)
T PRK10744 30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-M 108 (260)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-C
Confidence 47999999999999999999999999999999986 211147999999998742 24678999999988887 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.+....... .......+++.++++.+++. +..++. +.+||||||||++|||||+.+|++|
T Consensus 109 tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~ll 178 (260)
T PRK10744 109 SIYDNIAFGVRLFEK--LSRAEMDERVEWALTKAALWNEVKDKLHQS--------GYSLSGGQQQRLCIARGIAIRPEVL 178 (260)
T ss_pred cHHHHHhhhHhhcCC--CCHHHHHHHHHHHHHHcCCChhhHHHHhcC--------CCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 999999886543211 11222334577899999874 334555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ +.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 179 lLDEPt~~LD~~~~~~l~~~L~~~-~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 179 LLDEPCSALDPISTGRIEELITEL-KQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 68999999997 4788899999999999999999988654
No 161
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=332.93 Aligned_cols=203 Identities=23% Similarity=0.393 Sum_probs=168.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||+|++|++++|+|||||||||||++|+|+++|. ...+|+|+++|+++.. .+++.++|++|++.+++.
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~- 114 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK- 114 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-
Confidence 5899999999999999999999999999999998741 0147999999998742 246789999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.++...+... .......+.+.++++.+++.+ ..++. +..|||||||||+|||||+.+|++|
T Consensus 115 tv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgGq~qrv~laral~~~p~ll 185 (267)
T PRK14235 115 SIYENVAYGPRIHGLA-RSKAELDEIVETSLRKAGLWEEVKDRLHEP--------GTGLSGGQQQRLCIARAIAVSPEVI 185 (267)
T ss_pred cHHHHHHHHHHhcccc-cchHHHHHHHHHHHHHcCCchhhhHHhhCC--------cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999865432210 011222345678999999964 34455 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ .+ +.|||++||++ .++..+||++++|++|+++..|++++++
T Consensus 186 lLDEPt~~LD~~~~~~l~~~L~~l-~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 186 LMDEPCSALDPIATAKVEELIDEL-RQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHH-hc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 68999999997 5788899999999999999999988654
No 162
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-46 Score=309.75 Aligned_cols=192 Identities=30% Similarity=0.434 Sum_probs=172.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cc-cccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KF-RSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~-~~~ig~v~Q~~~~~~~l 75 (290)
.+|++.+++||.++|+|||||||||||-+++|+..|+ +|+|.+.|+++.. .+ .+++|||||...+.|+|
T Consensus 27 ~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l 103 (228)
T COG4181 27 KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL 103 (228)
T ss_pred ecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc
Confidence 4799999999999999999999999999999999995 8999999999854 23 47899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|..||++..+.++... .......+.++|+.+||.+....+ |.+|||||+|||+|||||+..|++||.||
T Consensus 104 tAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~Hy--------P~qLSGGEQQRVAiARAfa~~P~vLfADE 172 (228)
T COG4181 104 TALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHY--------PAQLSGGEQQRVALARAFAGRPDVLFADE 172 (228)
T ss_pred hhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccC--------ccccCchHHHHHHHHHHhcCCCCEEeccC
Confidence 9999999988876532 122234567899999999999888 66799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
||-+||..+-.+|.++|..++++.|+|.|+||||+ .+...|+|++-|.+|+++.
T Consensus 173 PTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 173 PTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 99999999999999999999889999999999997 4788999999999999874
No 163
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-45 Score=328.95 Aligned_cols=203 Identities=22% Similarity=0.365 Sum_probs=169.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++ |...++|+|+++|+++.. .+++.++|+||++.+++.+
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (252)
T PRK14256 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAM 100 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcC
Confidence 58999999999999999999999999999999986 321137999999998742 2467899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|+.||+.+....... .......+++.++++.+++.. ..++. +..||||||||++|||||+.+|++|
T Consensus 101 tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrl~laral~~~p~ll 170 (252)
T PRK14256 101 SIYDNVIAGYKLNGR--VNRSEADEIVESSLKRVALWDEVKDRLKSN--------AMELSGGQQQRLCIARTIAVKPEVI 170 (252)
T ss_pred cHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhCC--------cCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999876543211 111222345678899999854 33444 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 171 llDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 171 LMDEPASALDPISTLKIEELIEELK-E-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHH-h-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999994 4 58999999997 5788999999999999999999988653
No 164
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.2e-45 Score=330.81 Aligned_cols=198 Identities=28% Similarity=0.421 Sum_probs=170.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|++++ +|+|.++|+++.. .+++.++|+||++.+++.+|+++
T Consensus 13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 589999999999999999999999999999999854 6999999998753 24467999999988888899999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh-------CCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT-------DPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~-------~p~lll 152 (290)
|+.+...... ......+.+.++++.+++.+..++. +..||||||||++||+||+. +|++||
T Consensus 89 nl~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~~~~~~p~p~lll 156 (248)
T PRK03695 89 YLTLHQPDKT----RTEAVASALNEVAEALGLDDKLGRS--------VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLL 156 (248)
T ss_pred HHHhcCccCC----CcHHHHHHHHHHHHHcCCHhHhcCC--------cccCCHHHHHHHHHHHHHhccccccCCCCCEEE
Confidence 9987632111 1122235678899999998877877 45599999999999999998 779999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+.++|++++ ++|.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 157 lDEPt~~LD~~~~~~l~~~L~~~~-~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 157 LDEPMNSLDVAQQAALDRLLSELC-QQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999995 4589999999997 4788999999999999999999987653
No 165
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=330.68 Aligned_cols=203 Identities=22% Similarity=0.330 Sum_probs=169.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++|. ..++|+|.++|+++.. .+++.++|++|++.+++.+
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (258)
T PRK14241 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTM 100 (258)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCC
Confidence 4799999999999999999999999999999998741 0137999999998731 2467899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++...+.. .......+.+.++++.+++. +..++. +.+|||||||||+|||||+.+|++|
T Consensus 101 tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 170 (258)
T PRK14241 101 SIRDNVVAGLKLNGV--RNKKDLDELVEKSLRGANLWNEVKDRLDKP--------GGGLSGGQQQRLCIARAIAVEPDVL 170 (258)
T ss_pred cHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999886543221 11222334577889999884 344555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe------CCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA------DSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++.++||++++|+ +|++++.|++++++
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~-~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 171 LMDEPCSALDPISTLAIEDLINEL-KQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 999999999999999999999999 44 58999999997 57888999999997 79999999998664
No 166
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.3e-45 Score=330.53 Aligned_cols=202 Identities=25% Similarity=0.359 Sum_probs=169.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe-----cCc----c----ccccEEEEccCC-
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP-----VEG----K----FRSACGFMYQHD- 69 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~-----~~~----~----~~~~ig~v~Q~~- 69 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++ +.. . .++.++|+||++
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~ 99 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR 99 (258)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence 4899999999999999999999999999999999984 7999999998 542 1 245799999996
Q ss_pred -CCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 70 -LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 70 -~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
.+++.+|+.+|+.+........ ........+.++++.+++.+ ..++. +..|||||||||+|||||+.+
T Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~Gq~qrl~laral~~~ 169 (258)
T PRK11701 100 DGLRMQVSAGGNIGERLMAVGAR--HYGDIRATAGDWLERVEIDAARIDDL--------PTTFSGGMQQRLQIARNLVTH 169 (258)
T ss_pred cccCccccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHcCCChhHHhCC--------CccCCHHHHHHHHHHHHHhcC
Confidence 4677789999997643221110 11123345778999999964 56776 556999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 148 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 148 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 170 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999998555589999999997 5788899999999999999999988653
No 167
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=328.65 Aligned_cols=201 Identities=22% Similarity=0.385 Sum_probs=167.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcC---CCCCCCCccEEEECCEecCc------cccccEEEEccCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQR---LPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~---~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~ 74 (290)
.|+||++++||+++|+||||||||||+++|+|+ .+|. .++|+|.++|+++.. .+++.++|+||++.+++
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~- 97 (250)
T PRK14245 20 KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP- 97 (250)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCccCc-
Confidence 489999999999999999999999999999997 3441 137999999998742 24567999999988887
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
.|+.||+.++...+... ......+.+.++++.+++.+ ..++. +..||||||||++|||||+.+|++
T Consensus 98 ~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~l 167 (250)
T PRK14245 98 KSIFENVAYGLRVNGVK--DNAFIRQRVEETLKGAALWDEVKDKLKES--------AFALSGGQQQRLCIARAMAVSPSV 167 (250)
T ss_pred ccHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHcCCCcchhhhhhCC--------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 59999998865433211 11222345678899999854 34555 456999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||||+|||+.++..+.+.|+++ .+ ++|||++||++ .++.++||++++|++|++++.|++++++
T Consensus 168 llLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 168 LLMDEPASALDPISTAKVEELIHEL-KK-DYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999 44 68999999997 4788999999999999999999998764
No 168
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-45 Score=328.33 Aligned_cols=202 Identities=24% Similarity=0.353 Sum_probs=167.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|+++.. .+++.++|+||++.+++ +
T Consensus 22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 100 (252)
T PRK14239 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-M 100 (252)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-C
Confidence 58999999999999999999999999999999853 521137999999998732 24668999999988887 7
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++....... ........+.++++.+++.+ ..++. +.+|||||||||+|||||+.+|++|
T Consensus 101 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14239 101 SIYENVVYGLRLKGIK--DKQVLDEAVEKSLKGASIWDEVKDRLHDS--------ALGLSGGQQQRVCIARVLATSPKII 170 (252)
T ss_pred cHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHcCCchhHHHHHhcC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999865432111 11222345677888888743 34555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ .+ +.|||++||++ .++..+||++++|++|++++.|++++++
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~-~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 171 LLDEPTSALDPISAGKIEETLLGL-KD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEcCCccccCHHHHHHHHHHHHHH-hh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999998 44 58999999997 4788999999999999999999998764
No 169
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-45 Score=329.00 Aligned_cols=203 Identities=21% Similarity=0.408 Sum_probs=168.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+.+ |....+|+|+++|+++.. .+++.++|+||++.+++.
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~- 100 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK- 100 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-
Confidence 48999999999999999999999999999999986 211147999999998742 246789999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.+....+... .........+.++++.+++.+ ..++. +..|||||||||+|||||+.+|++|
T Consensus 101 tv~~ni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~ll 171 (251)
T PRK14244 101 SIYDNVAYGPKLHGLA-KNKKKLDEIVEKSLTSVGLWEELGDRLKDS--------AFELSGGQQQRLCIARAIAVKPTML 171 (251)
T ss_pred CHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCCchhhhHhhcC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998864332211 111222345678899999865 23444 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ |.|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 172 LMDEPCSALDPVATNVIENLIQEL-KK-NFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999998 44 79999999997 4788899999999999999999988654
No 170
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-46 Score=363.49 Aligned_cols=204 Identities=23% Similarity=0.302 Sum_probs=173.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.||||++++||+++|+||||||||||+|+|+|+++|. .++|+|+++|+++.. ..++.+||+||++.+++.+||+
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 100 (506)
T PRK13549 22 DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVL 100 (506)
T ss_pred cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHH
Confidence 5899999999999999999999999999999999861 137999999998853 1346799999999899999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...+...........+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 172 (506)
T PRK13549 101 ENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP--------VGNLGLGQQQLVEIAKALNKQARLLILDEPTA 172 (506)
T ss_pred HHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 9998865322100011222335678899999998888888 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
+||+.++..++++|++++ +.|.|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 173 ~LD~~~~~~l~~~l~~l~-~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 173 SLTESETAVLLDIIRDLK-AHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999995 4589999999997 578889999999999999999987654
No 171
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.1e-45 Score=328.34 Aligned_cols=202 Identities=24% Similarity=0.347 Sum_probs=168.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC-CCccEEEECCEecCc-c-ccccEEEEccCCC--CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC-IIDGDIRVNGKPVEG-K-FRSACGFMYQHDL--FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~-~~~G~I~i~G~~~~~-~-~~~~ig~v~Q~~~--~~~~lTv~ 78 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|.. .++|+|+++|+++.. . .++.++|+||++. +.+.+|+.
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 99 (254)
T PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMH 99 (254)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHH
Confidence 48999999999999999999999999999999998721 037999999998753 2 2457999999974 45668999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
+++.+........ . ....+.++++.+++.+ ..++. +..|||||||||+|||||+.+|++|||||
T Consensus 100 ~~~~~~~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~lLlLDE 166 (254)
T PRK10418 100 THARETCLALGKP---A--DDATLTAALEAVGLENAARVLKLY--------PFEMSGGMLQRMMIALALLCEAPFIIADE 166 (254)
T ss_pred HHHHHHHHHcCCC---h--HHHHHHHHHHHcCCCChhhhhhcC--------CcccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9987654322111 1 1245778999999976 35666 45699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 167 Pt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 167 PTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred CCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999998655589999999997 4778899999999999999999988654
No 172
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=334.99 Aligned_cols=207 Identities=27% Similarity=0.349 Sum_probs=171.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC-----CCccEEEECCEecCc----cccccEEEEccCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC-----IIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~-----~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~ 74 (290)
.|+||++++|++++|+|||||||||||++|+|+++|.. ..+|+|.++|+++.. .+++.++|+||++.+++.
T Consensus 18 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~ 97 (272)
T PRK13547 18 RDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFA 97 (272)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCC
Confidence 48999999999999999999999999999999998830 117999999998753 245679999999776667
Q ss_pred CCHHHHHHHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH--------
Q psy2520 75 LTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-------- 145 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~-------- 145 (290)
+||.||+.+....... .........+.+.++++.+++.+..++. +..|||||||||+|||||+
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~laral~~~~~~~~~ 169 (272)
T PRK13547 98 FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD--------VTTLSGGELARVQFARVLAQLWPPHDA 169 (272)
T ss_pred CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC--------cccCCHHHHHHHHHHHHHhcccccccc
Confidence 8999999875321110 0000112234577899999998887877 4569999999999999999
Q ss_pred -hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 146 -TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 146 -~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 170 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 170 AQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred CCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 599999999999999999999999999999554589999999997 4788899999999999999999988664
No 173
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=327.49 Aligned_cols=200 Identities=29% Similarity=0.422 Sum_probs=163.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.++|++|++.+++ .||+|
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 94 (234)
T cd03251 19 RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAE 94 (234)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHH
Confidence 4899999999999999999999999999999999984 8999999998743 34677999999988876 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.++.................+.++++.+ ++....++. +..||||||||++|||||+.+|+++||||||
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 166 (234)
T cd03251 95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGER--------GVKLSGGQRQRIAIARALLKDPPILILDEAT 166 (234)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccC--------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 998753211100111111111245566665 566666666 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.+.|+++ .+ +.|||++||++ .++. .||++++|++|+++..|+++++.
T Consensus 167 ~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~-~~~~-~~d~v~~l~~G~i~~~~~~~~~~ 224 (234)
T cd03251 167 SALDTESERLVQAALERL-MK-NRTTFVIAHRL-STIE-NADRIVVLEDGKIVERGTHEELL 224 (234)
T ss_pred ccCCHHHHHHHHHHHHHh-cC-CCEEEEEecCH-HHHh-hCCEEEEecCCeEeeeCCHHHHH
Confidence 999999999999999998 44 78999999997 4665 49999999999999999988654
No 174
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-45 Score=327.92 Aligned_cols=202 Identities=22% Similarity=0.360 Sum_probs=168.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|+++.. ..++.++|+||++.+++ +
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~ 99 (251)
T PRK14270 21 NDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-M 99 (251)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-C
Confidence 5899999999999999999999999999999998751 0147999999998742 24567999999988887 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.|........ .......++.++++.+++. +..++. +.+||||||||++|||||+.+|++|
T Consensus 100 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 169 (251)
T PRK14270 100 SIYDNVAYGPRIHGIK--DKKELDKIVEWALKKAALWDEVKDDLKKS--------ALKLSGGQQQRLCIARTIAVKPDVI 169 (251)
T ss_pred cHHHHHHhHHHhcCCC--cHHHHHHHHHHHHHHcCCchhhhhHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999865432210 1122234567889999874 234555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 170 llDEP~~~LD~~~~~~l~~~L~~~~-~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 170 LMDEPTSALDPISTLKIEDLMVELK-K-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHH-h-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999999984 4 58999999997 5788999999999999999999998764
No 175
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-45 Score=326.74 Aligned_cols=202 Identities=23% Similarity=0.381 Sum_probs=168.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD--DCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~--~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+.++ ...++|+|.++|+++.. .+++.++|++|++.+++ +
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 98 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-M 98 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-c
Confidence 489999999999999999999999999999998763 11137999999998752 24678999999988887 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.+........ ......+.+.++++.+++. +..++. +.+||||||||++|||||+.+|++|
T Consensus 99 t~~~ni~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 168 (250)
T PRK14240 99 SIYDNVAYGPRTHGIK--DKKKLDEIVEKSLKGAALWDEVKDRLKKS--------ALGLSGGQQQRLCIARALAVEPEVL 168 (250)
T ss_pred cHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCchhhHHHHhcC--------CCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999865432211 1122334567788888874 234555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ +.|||++||++ ..+..+||++++|++|+++..|+++++.
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 169 LMDEPTSALDPISTLKIEELIQEL-KK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 78999999997 4788899999999999999999988653
No 176
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-45 Score=367.56 Aligned_cols=202 Identities=22% Similarity=0.328 Sum_probs=175.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.||||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.|+||||++ .+++.
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 5899999999999999999999999999999999984 7999999998743 1456899999996 58899
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||.+|+.+....+.. .......+++.++++.+||. +..++. +.+|||||||||+|||||+.+|++|||
T Consensus 418 ~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~L~~~gL~~~~~~~~--------~~~LSgGqrQRv~iAraL~~~p~llll 487 (623)
T PRK10261 418 QTVGDSIMEPLRVHGL--LPGKAAAARVAWLLERVGLLPEHAWRY--------PHEFSGGQRQRICIARALALNPKVIIA 487 (623)
T ss_pred CCHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCHHHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999986543221 01223345678999999996 567877 556999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++||+.++.+++++|++++++.|.|||++|||+ ..+..+||+|++|++|++++.|++++++
T Consensus 488 DEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 488 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999655689999999997 5788999999999999999999998775
No 177
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2e-45 Score=323.51 Aligned_cols=191 Identities=26% Similarity=0.458 Sum_probs=166.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.++||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.++|+||++.+++.+|
T Consensus 22 ~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (220)
T TIGR02982 22 FDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT 98 (220)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence 4899999999999999999999999999999999984 8999999998742 24578999999999999899
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+.||+.++...... ....+..+.+.++++.+++.+..++. +..||+|||||++|||+|+.+|+++|||||
T Consensus 99 ~~~n~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 99 ARQNVQMALELQPN--LSYQEARERARAMLEAVGLGDHLDYY--------PHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred HHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCChhhhhcC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999987543311 12233345678999999998888887 556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
|+|||+.++..+.+.|++++++.++|||++||++ . +.++||++++|++|++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 9999999999999999998554689999999997 3 5689999999999986
No 178
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-45 Score=326.43 Aligned_cols=203 Identities=25% Similarity=0.368 Sum_probs=168.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|+++.. .+++.++|++|++.+++.+
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (252)
T PRK14272 21 KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTM 100 (252)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCC
Confidence 58999999999999999999999999999999987631 137999999998742 2456799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|+.||+.++....... ......+.+.++++.+++. +..++. +..||||||||++|||||+.+|++|
T Consensus 101 t~~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14272 101 SVFDNVVAGLKLAGIR--DRDHLMEVAERSLRGAALWDEVKDRLKTP--------ATGLSGGQQQRLCIARALAVEPEIL 170 (252)
T ss_pred CHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCcchhhhhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998765332110 1122234456667777653 334555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ ++|||++||++ .++..+||++++|++|++++.|++++++
T Consensus 171 llDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 171 LMDEPTSALDPASTARIEDLMTDL-KK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999998 44 68999999997 4788899999999999999999998764
No 179
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=361.34 Aligned_cols=202 Identities=24% Similarity=0.321 Sum_probs=173.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++.+|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. . .++.++|+||++.+++.+||+
T Consensus 21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK10762 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIA 97 (501)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHH
Confidence 5899999999999999999999999999999999984 8999999998743 1 246799999999999999999
Q ss_pred HHHHHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.++...... .........+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||
T Consensus 98 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~lllLDEPt 169 (501)
T PRK10762 98 ENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL--------VGELSIGEQQMVEIAKVLSFESKVIIMDEPT 169 (501)
T ss_pred HHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999986432110 0111122334578899999999888888 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
++||+.++..++++|++++ +.|.|||++|||+ .++..+||++++|++|+++..|+++++
T Consensus 170 ~~LD~~~~~~l~~~l~~l~-~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 170 DALTDTETESLFRVIRELK-SQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999995 4589999999997 578899999999999999999887653
No 180
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-45 Score=326.18 Aligned_cols=202 Identities=23% Similarity=0.422 Sum_probs=168.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD--DCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~--~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++| ....+|+|.++|.++.. .+++.++|+||++.+++ +
T Consensus 20 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 98 (250)
T PRK14262 20 KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-M 98 (250)
T ss_pred eeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-c
Confidence 589999999999999999999999999999999874 11147999999998742 24678999999988887 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++....... ......+.+.++++.+++.+ ..++. +.+||||||||++|||||+.+|++|
T Consensus 99 tv~e~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~qr~~la~al~~~p~ll 168 (250)
T PRK14262 99 SIYDNVAFGPRIHGVK--SKHKLDRIVEESLKKAALWDEVKSELNKP--------GTRLSGGQQQRLCIARALAVEPEVI 168 (250)
T ss_pred cHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHcCCCchhHHHHhCC--------hhhcCHHHHHHHHHHHHHhCCCCEE
Confidence 9999999865432111 11222344678888888854 24555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ ++|||++||++ ..+..+||++++|++|+++..|+++++.
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~-~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 169 LLDEPTSALDPIATQRIEKLLEEL-SE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEeCCccccCHHHHHHHHHHHHHH-hc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999998 44 68999999997 4688999999999999999999988654
No 181
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.6e-45 Score=354.44 Aligned_cols=202 Identities=26% Similarity=0.392 Sum_probs=179.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC--c----cccccEEEEccCC--CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE--G----KFRSACGFMYQHD--LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~--~----~~~~~ig~v~Q~~--~~~~~l 75 (290)
.||||++.+||++||+|+||||||||.++|+|+++|+ +|.|.++|.++. . ..++.+-++||++ .+.|.+
T Consensus 308 ~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~ 384 (539)
T COG1123 308 DDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM 384 (539)
T ss_pred eeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCcccccCccc
Confidence 5899999999999999999999999999999999994 799999998732 1 2567899999986 678999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
||.+++......+.... ..++.+++.++++.++|.. +.+++ +.+|||||||||+|||||+.+|++|++|
T Consensus 385 tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~VgL~~~~l~ry--------P~elSGGQrQRvaIARALa~~P~lli~D 454 (539)
T COG1123 385 TVGDILAEPLRIHGGGS--GAERRARVAELLELVGLPPEFLDRY--------PHELSGGQRQRVAIARALALEPKLLILD 454 (539)
T ss_pred cHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHcCCCHHHHhcC--------chhcCcchhHHHHHHHHHhcCCCEEEec
Confidence 99999998776544322 3455567899999999976 68888 5669999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||.||+..+.+++++|+++.++.|.|.|+||||+ ..+..+||||++|++|+++..|+.++++
T Consensus 455 Ep~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 455 EPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999878899999999997 5899999999999999999999888775
No 182
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.9e-45 Score=327.05 Aligned_cols=200 Identities=27% Similarity=0.382 Sum_probs=159.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. .+++.++|++|++.+++ .||+|
T Consensus 20 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 95 (238)
T cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAE 95 (238)
T ss_pred eceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHH
Confidence 5899999999999999999999999999999999984 8999999998743 23567999999988776 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.++.................+.++++.+ ++....++. +.+|||||||||+|||||+.+|++|||||||
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEP~ 167 (238)
T cd03249 96 NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGER--------GSQLSGGQKQRIAIARALLRNPKILLLDEAT 167 (238)
T ss_pred HhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccC--------CccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 998753221100000000001123334433 444445555 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.+.|+++ . +|+|||++||++ .++. +||++++|++|++++.|+.+++.
T Consensus 168 ~gLD~~~~~~l~~~l~~~-~-~g~~vi~~sh~~-~~~~-~~d~v~~l~~G~i~~~~~~~~~~ 225 (238)
T cd03249 168 SALDAESEKLVQEALDRA-M-KGRTTIVIAHRL-STIR-NADLIAVLQNGQVVEQGTHDELM 225 (238)
T ss_pred ccCCHHHHHHHHHHHHHh-c-CCCEEEEEeCCH-HHHh-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999998 4 589999999997 4564 89999999999999999887654
No 183
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.4e-45 Score=352.24 Aligned_cols=206 Identities=25% Similarity=0.416 Sum_probs=181.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCCccEEEECCEecCc-------c-ccccEEEEccCC--CCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD-CIIDGDIRVNGKPVEG-------K-FRSACGFMYQHD--LFS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~-~~~~G~I~i~G~~~~~-------~-~~~~ig~v~Q~~--~~~ 72 (290)
.||||++.+||++||+|.|||||||+.++|.|++++. ...+|+|.++|+++.. . ..+.|+|+||++ .+-
T Consensus 26 ~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~sln 105 (539)
T COG1123 26 RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLN 105 (539)
T ss_pred ecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcC
Confidence 5899999999999999999999999999999999876 3458999999997743 1 336799999996 566
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCc--ccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT--RIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
|-+||.+.+.-....+... ...+..+++.++|+.+||.+...+ + +.+|||||||||.||+||+.+|++
T Consensus 106 P~~tIg~Qi~E~~~~h~~~--~~~ea~~~a~elL~~Vgl~~~~~~~~y--------PheLSGG~rQRv~iAmALa~~P~L 175 (539)
T COG1123 106 PVMTIGDQIREALRLHGKG--SRAEARKRAVELLEQVGLPDPERRDRY--------PHQLSGGMRQRVMIAMALALKPKL 175 (539)
T ss_pred chhhHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHcCCCChhhhccC--------CcccCchHHHHHHHHHHHhCCCCE
Confidence 7799999998877666432 245566778999999999876654 5 667999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+||||++||+..+.+|+++|++++++.|+++|+||||+ ..+.++||||++|++|++++.|++++++.
T Consensus 176 LIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 176 LIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred EEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999888899999999998 58999999999999999999999998874
No 184
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=360.63 Aligned_cols=202 Identities=23% Similarity=0.318 Sum_probs=173.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-----ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++... .++.++|+||++.+++.+||+
T Consensus 22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 98 (510)
T PRK09700 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVL 98 (510)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHH
Confidence 5899999999999999999999999999999999984 79999999987531 245799999999899999999
Q ss_pred HHHHHHHHhc----CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 79 EHLYFMALLK----LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 79 e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
||+.++.... ...........+++.++++.+||.+..+++ +.+|||||||||+|||||+.+|++||||
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgG~~qrv~ia~al~~~p~lllLD 170 (510)
T PRK09700 99 ENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK--------VANLSISHKQMLEIAKTLMLDAKVIIMD 170 (510)
T ss_pred HHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9998753211 000011122345678899999999888888 4559999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||+|||+.++..++++|+++++ .|.|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 171 EPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 171 EPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999999999999999999954 589999999997 578889999999999999999988764
No 185
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-45 Score=308.76 Aligned_cols=197 Identities=29% Similarity=0.466 Sum_probs=178.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+|+++.+||.++++||||||||||||+++|+.+|. .|+|.+||++++.- -..-|.|||++.++|.+||.+|++|
T Consensus 22 e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP-gaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 22 EDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP-GAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC-CccceeEeccCccchhhHHHHHHHH
Confidence 3799999999999999999999999999999999995 79999999998641 2346899999999999999999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+..++. +.+.++.+.+.+.+..+||.+..++. +.+|||||||||.|||||+.+|++|+||||+++||.-
T Consensus 98 gL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~--------i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~ 166 (259)
T COG4525 98 GLQLRG---IEKAQRREIAHQMLALVGLEGAEHKY--------IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDAL 166 (259)
T ss_pred HHHhcC---CCHHHHHHHHHHHHHHhCcccccccc--------eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHH
Confidence 998875 35567778889999999999998888 6779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe--CCeEEEEcCHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAFIGSKD 216 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~--~G~i~~~g~~~ 216 (290)
+++++.++|-++.++.|+.++++||+. +++.-+++++++|+ .|+++..-+++
T Consensus 167 tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 167 TREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999778899999999997 57888999999998 57888776665
No 186
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-45 Score=329.21 Aligned_cols=202 Identities=22% Similarity=0.384 Sum_probs=166.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|+++.. .+++.++|+||++.+++.
T Consensus 38 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~- 116 (268)
T PRK14248 38 NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK- 116 (268)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-
Confidence 47999999999999999999999999999999864 111147999999998742 245679999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.+........ ........+.++++.+++. +..++. +..||||||||++|||||+.+|++|
T Consensus 117 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgGq~qrl~laral~~~p~ll 186 (268)
T PRK14248 117 SIYNNITHALKYAGER--RKSVLDEIVEESLTKAALWDEVKDRLHSS--------ALSLSGGQQQRLCIARTLAMKPAVL 186 (268)
T ss_pred cHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHcCCCcchHHHHhcC--------cccCCHHHHHHHHHHHHHhCCCCEE
Confidence 9999999865332110 1112234456788888874 334555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++.++||++++|++|++++.|++++++
T Consensus 187 lLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 187 LLDEPASALDPISNAKIEELITEL-KE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEcCCCcccCHHHHHHHHHHHHHH-hc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 58999999997 4788899999999999999999988654
No 187
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.4e-45 Score=317.59 Aligned_cols=184 Identities=30% Similarity=0.423 Sum_probs=158.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE 91 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence 4899999999999999999999999999999999984 8999999998531 1356799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|++||+.+....... ......+.+.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||
T Consensus 92 t~~e~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 92 TVEENLDLGLKYKKL---SKKEKREKKKEALEKVGLNLKLKQK--------IYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCchhhhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999999986543211 1223345678899999998888888 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
||+|||+.++..+.+.|+++++ .|.|||++||++. ...+||++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999999999999999999854 5899999999973 45789999875
No 188
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-45 Score=329.48 Aligned_cols=200 Identities=23% Similarity=0.340 Sum_probs=165.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++|.. .++|+|.++|+++.. .+++.++|+||++.+++ .
T Consensus 30 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~ 108 (269)
T PRK14259 30 KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-K 108 (269)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch-h
Confidence 48999999999999999999999999999999987310 148999999998741 24567999999988887 4
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.+........ . ...+.+.++++.+++. +..++. +.+|||||||||+|||||+.+|++|
T Consensus 109 tv~enl~~~~~~~~~~---~-~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~ll 176 (269)
T PRK14259 109 SIYENIAFGARINGYT---G-DMDELVERSLRKAAVWDECKDKLNES--------GYSLSGGQQQRLCIARTIAIEPEVI 176 (269)
T ss_pred hHHHHHhhhhhhcCCc---H-HHHHHHHHHHHHhCCcchhhhhhCCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999876432211 1 1223456778888764 334555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC-----------CeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-----------SRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~-----------G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..++++|+++ ++ +.|||++||++ .++..+||++++|++ |++++.|++++++
T Consensus 177 lLDEPt~gLD~~~~~~l~~~l~~~-~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 177 LMDEPCSALDPISTLKIEETMHEL-KK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 999999999999999999999998 44 68999999997 578899999999996 6789999998764
No 189
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=326.17 Aligned_cols=204 Identities=21% Similarity=0.333 Sum_probs=170.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+. ..+|+|.++|+++.. .+++.++|+||++.+++ +
T Consensus 24 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~ 102 (261)
T PRK14258 24 EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-M 102 (261)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-c
Confidence 57999999999999999999999999999999998731 136999999998631 24677999999988888 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.+....... .......+.+.++++.+++.+ ..++. +..||||||||++|||+|+.+|++|
T Consensus 103 tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgGq~qrv~laral~~~p~vl 172 (261)
T PRK14258 103 SVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHKS--------ALDLSGGQQQRLCIARALAVKPKVL 172 (261)
T ss_pred cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999886533211 011222345678899998754 34454 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC-----CeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-----SRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~-----G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++.+.|.|||++||++ .++.++||++++|++ |+++..|++++++
T Consensus 173 lLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 173 LMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 999999999999999999999998544589999999997 578899999999999 9999999999764
No 190
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-45 Score=356.56 Aligned_cols=202 Identities=20% Similarity=0.266 Sum_probs=172.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+||+
T Consensus 15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (491)
T PRK10982 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVM 91 (491)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHH
Confidence 5899999999999999999999999999999999984 8999999998753 2356799999998889999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...............+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 92 DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK--------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc--------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 9998754211010011222335678899999998888888 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||+.++..+.++|++++ +.|.|||++||++ .++..+||++++|++|+++..|+++++
T Consensus 164 ~LD~~~~~~l~~~l~~l~-~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLK-ERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 999999999999999994 4589999999997 578889999999999999999987654
No 191
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=9.6e-45 Score=325.41 Aligned_cols=202 Identities=25% Similarity=0.338 Sum_probs=167.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe-----cCc----c----ccccEEEEccCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP-----VEG----K----FRSACGFMYQHDL 70 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~-----~~~----~----~~~~ig~v~Q~~~ 70 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|++ +.. . .++.++|++|++.
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (253)
T TIGR02323 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR 96 (253)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcc
Confidence 4899999999999999999999999999999999984 8999999976 532 1 2356999999864
Q ss_pred --CCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 71 --FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 71 --~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
+++.+|+.+|+.+........ ........+.++++.+++. ...++. +..|||||||||+|||||+.+
T Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~--------~~~LSgG~~qrv~laral~~~ 166 (253)
T TIGR02323 97 DGLRMRVSAGANIGERLMAIGAR--HYGNIRAAAHDWLEEVEIDPTRIDDL--------PRAFSGGMQQRLQIARNLVTR 166 (253)
T ss_pred cccCccccHHHHHHHHHHHhccc--chHHHHHHHHHHHHHcCCChhhhhcC--------chhcCHHHHHHHHHHHHHhcC
Confidence 456679999987643211100 0112235678899999996 466777 456999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 148 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 148 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|++|||||||+|||+.++..+.++|++++++.|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 167 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999998555589999999997 5788899999999999999999987653
No 192
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=323.94 Aligned_cols=202 Identities=23% Similarity=0.347 Sum_probs=168.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++.+|++++|+||||||||||+++|+|+++|.. ..+|+|.++|+++.. .+++.++|+||++.+++.
T Consensus 21 ~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~- 99 (251)
T PRK14249 21 KNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK- 99 (251)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-
Confidence 58999999999999999999999999999999998841 125999999998742 246789999999988875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|+.||+.+....+... ......+.+.++++.+++.+ ..++. +..|||||||||+|||||+.+|++|
T Consensus 100 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~ll 169 (251)
T PRK14249 100 SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNLHKS--------GLALSGGQQQRLCIARVLAIEPEVI 169 (251)
T ss_pred cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999875432211 11122344667788888753 34455 5669999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 170 lLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 170 LMDEPCSALDPVSTMRIEELMQEL-KQ-NYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999998 44 78999999997 5788899999999999999999988654
No 193
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.7e-45 Score=357.91 Aligned_cols=196 Identities=24% Similarity=0.387 Sum_probs=172.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. . .++.+||+||++.+++.+||+
T Consensus 28 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 104 (510)
T PRK15439 28 KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVK 104 (510)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHH
Confidence 4899999999999999999999999999999999984 8999999998753 1 235699999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.+.... . ....+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||+
T Consensus 105 e~l~~~~~~------~-~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~ 169 (510)
T PRK15439 105 ENILFGLPK------R-QASMQKMKQLLAALGCQLDLDSS--------AGSLEVADRQIVEILRGLMRDSRILILDEPTA 169 (510)
T ss_pred HHhhccccc------c-hHHHHHHHHHHHHcCCCccccCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 999885321 1 12234577899999998888888 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.++|++++ +.|.|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 170 ~LD~~~~~~l~~~l~~~~-~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 170 SLTPAETERLFSRIRELL-AQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 999999999999999995 4589999999997 5788999999999999999999987653
No 194
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=325.45 Aligned_cols=202 Identities=21% Similarity=0.350 Sum_probs=168.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCC--CccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCI--IDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~--~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|+||||||||+++|+|+++|... ++|+|.++|+++.. .+++.++|+||++.+++ +
T Consensus 24 ~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~ 102 (259)
T PRK14260 24 EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-M 102 (259)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-c
Confidence 589999999999999999999999999999999885311 37999999998742 24567999999988887 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++...... .......+.+.++++.+++. +..++. +..|||||||||+|||||+.+|++|
T Consensus 103 tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 172 (259)
T PRK14260 103 SIYENVAYGVRISAK--LPQADLDEIVESALKGAALWQEVKDKLNKS--------ALGLSGGQQQRLCIARALAIKPKVL 172 (259)
T ss_pred cHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhhHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999886543211 11122234567788888874 345555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe-----CCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-----DSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~-----~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ ++|||++||++ .++.++||++++|+ +|+++..|++++++
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 173 LMDEPCSALDPIATMKVEELIHSL-RS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 999999999999999999999998 44 58999999997 57889999999998 59999999999764
No 195
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.2e-44 Score=327.90 Aligned_cols=202 Identities=25% Similarity=0.356 Sum_probs=171.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.|+||++++|++++|+||||||||||+++|+|+.+|+ +|+|.++|.++.. .+++.++|++|++ .+++.
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 105 (268)
T PRK10419 29 NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPR 105 (268)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCC
Confidence 5899999999999999999999999999999999884 8999999998743 2456899999997 46678
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
.|+.+++.+...... ..........+.++++.+++. ...++. +..||||||||++|||||+.+|++|||
T Consensus 106 ~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~~LS~Ge~qrl~laral~~~p~lllL 175 (268)
T PRK10419 106 KTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKR--------PPQLSGGQLQRVCLARALAVEPKLLIL 175 (268)
T ss_pred CCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCC--------CccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 899999876543111 111223344678899999996 466776 456999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||+|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 176 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 176 DEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 9999999999999999999999555589999999997 5788899999999999999999988754
No 196
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-45 Score=322.50 Aligned_cols=200 Identities=27% Similarity=0.388 Sum_probs=158.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++.. .+++.++|+||++.+++. ||+|
T Consensus 20 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~ 95 (229)
T cd03254 20 KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIME 95 (229)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHH
Confidence 5899999999999999999999999999999999984 7999999998753 346779999999888775 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.+..................+.++++.+ ++....++. +.+|||||||||+|||||+.+|++|||||||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~LS~G~~~rv~la~al~~~p~llllDEP~ 167 (229)
T cd03254 96 NIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGEN--------GGNLSQGERQLLAIARAMLRDPKILILDEAT 167 (229)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcC--------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 998753211100000000001123334433 444444444 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+++.|+++ ++ |.|||++||++. ++ ..||++++|++|++++.|+.+++.
T Consensus 168 ~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 168 SNIDTETEKLIQEALEKL-MK-GRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred ccCCHHHHHHHHHHHHHh-cC-CCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999998 44 899999999974 55 469999999999999999887654
No 197
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=323.71 Aligned_cols=202 Identities=23% Similarity=0.376 Sum_probs=167.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++ |....+|+|.++|+++.. .+++.++|++|++.+++ .
T Consensus 21 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 99 (251)
T PRK14251 21 HGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-F 99 (251)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-C
Confidence 47999999999999999999999999999999986 211147999999998742 24667999999988886 7
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++....... ......+.+.++++.+++. ...++. +.+||||||||++|||||+.+|+++
T Consensus 100 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~qr~~laral~~~p~ll 169 (251)
T PRK14251 100 SVYDNVAYGLKIAGVK--DKELIDQRVEESLKQAAIWKETKDNLDRN--------AQAFSGGQQQRICIARALAVRPKVV 169 (251)
T ss_pred cHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCCcchHHHhccC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998765332111 1112234567888888884 234555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 170 llDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 170 LLDEPTSALDPISSSEIEETLMEL-KH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EecCCCccCCHHHHHHHHHHHHHH-Hc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999998 44 68999999997 4788899999999999999999988653
No 198
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-45 Score=308.52 Aligned_cols=201 Identities=26% Similarity=0.438 Sum_probs=178.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----------------cccccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----------------KFRSACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----------------~~~~~ig~v~ 66 (290)
.+||+.++.|+++.|||.|||||||+|+||+=+..|+ .|+|.++|+.+.- .+|.+.|+||
T Consensus 23 KGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVF 99 (256)
T COG4598 23 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVF 99 (256)
T ss_pred cceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhh
Confidence 4799999999999999999999999999999999995 7999999998731 2567799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 67 Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
|+.+++..|||.||+.-+..--+ ..++.+..++++.+|.++|+.+..+.+ +..|||||+||++|||||+.
T Consensus 100 Q~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~Y--------P~~LSGGQQQR~aIARaLam 169 (256)
T COG4598 100 QHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAY--------PAHLSGGQQQRVAIARALAM 169 (256)
T ss_pred hhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcC--------ccccCchHHHHHHHHHHHhc
Confidence 99999999999999986542211 134556677889999999999999988 66799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|+++|+|||||+|||.-.-++++.+++++ +.|+|.+++||.+ .++.+.+.+|++|++|.+-..|+|++++
T Consensus 170 eP~vmLFDEPTSALDPElVgEVLkv~~~LA-eEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 170 EPEVMLFDEPTSALDPELVGEVLKVMQDLA-EEGRTMVVVTHEM-GFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred CCceEeecCCcccCCHHHHHHHHHHHHHHH-HhCCeEEEEeeeh-hHHHhhhhheEEeecceecccCChHHHh
Confidence 999999999999999999999999999995 5699999999997 5788899999999999999999999765
No 199
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=8e-45 Score=337.58 Aligned_cols=187 Identities=25% Similarity=0.368 Sum_probs=164.5
Q ss_pred EECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHHHHHHhcCchhhhH
Q psy2520 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKA 95 (290)
Q Consensus 18 IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~ 95 (290)
|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|+||++.+++.+||+||+.|+...+.. ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~---~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKV---PR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCC---CH
Confidence 68999999999999999999984 8999999998854 2456799999999999999999999997643321 22
Q ss_pred HHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2520 96 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175 (290)
Q Consensus 96 ~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 175 (290)
....+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRK--------PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCC--------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 23345678899999999888888 5569999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 176 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 176 ~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+++.|.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 147 ~~~~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 147 QEQLGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred HHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 655689999999997 5788999999999999999999998775
No 200
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=7.4e-45 Score=320.80 Aligned_cols=197 Identities=28% Similarity=0.390 Sum_probs=164.4
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCC--CCCCHHHHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS--PSLTVYEHLYFMA 85 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~--~~lTv~e~l~~~~ 85 (290)
|++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .++.++|+||++.++ ..+|+.+|+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 568999999999999999999999999999984 7999999988643 456799999997664 3479999998753
Q ss_pred HhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 86 LLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
..... ...........+.++++.+++.+..++. +.+|||||||||+|||||+.+|+++||||||+|||+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~ 148 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRP--------VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 21100 0001112234578899999998888877 45599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+..+.+.|++++ ++|.|+|++||++ .++.++||+++++ +|+++..|+++++.
T Consensus 149 ~~~l~~~l~~~~-~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 149 QELLTELFIELA-GAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHHH-HcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999999995 4589999999997 4788999999999 89999999988653
No 201
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-46 Score=327.91 Aligned_cols=197 Identities=24% Similarity=0.412 Sum_probs=176.8
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCC
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPS 74 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~ 74 (290)
..+++|..+.-.++||.|+||||||||+|+|+|+.+|+ +|.|.+||+-+.. .-+++|||||||-.+||+
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH 90 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH 90 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccc
Confidence 34677888775799999999999999999999999995 8999999987743 146789999999999999
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
+||+.|+.|+.... ....++++.+.+|+.+..++. |..|||||||||+|+|||+..|++||||
T Consensus 91 ~tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~--------P~~LSGGEkQRVAIGRALLt~P~LLLmD 153 (352)
T COG4148 91 YTVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRY--------PGTLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred eEEecchhhhhccc---------chHhHHHHHHHhCcHHHHhhC--------CCccCcchhhHHHHHHHHhcCCCeeeec
Confidence 99999999986432 223467899999999999999 5669999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||.++||..-+.+++-.|.++..+-+..|++|||.+ +|+.++||+|++|++|++.+.|+.+++..
T Consensus 154 EPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 154 EPLASLDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred CchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999999999877889999999997 68999999999999999999999997753
No 202
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-44 Score=325.85 Aligned_cols=202 Identities=22% Similarity=0.300 Sum_probs=168.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++.+||+++|+|||||||||||++|+|+++|. ..++|+|.++|+++.. .+++.++|+||++.+++ .
T Consensus 37 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 115 (267)
T PRK14237 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-K 115 (267)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-c
Confidence 4799999999999999999999999999999998641 1148999999998742 24668999999988887 5
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++...... .......+.+.++++.+++.+ ..++. +.+||||||||++|||||+.+|++|
T Consensus 116 tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--------~~~LS~G~~qrl~laral~~~p~ll 185 (267)
T PRK14237 116 SIYENITFALERAGV--KDKKVLDEIVETSLKQAALWDQVKDDLHKS--------ALTLSGGQQQRLCIARAIAVKPDIL 185 (267)
T ss_pred cHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCCchhhhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999986543211 112223355778899998853 34555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 186 lLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 186 LMDEPASALDPISTMQLEETMFEL-KK-NYTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH-hc-CCEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999 44 68999999997 4788999999999999999999998653
No 203
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-44 Score=322.51 Aligned_cols=201 Identities=22% Similarity=0.334 Sum_probs=167.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc-----cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.++.. .+++.++|+||++.+++ .|
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 98 (249)
T PRK14253 20 KSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MS 98 (249)
T ss_pred ecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-cc
Confidence 58999999999999999999999999999999988620 137999999998742 34678999999988887 89
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|.||+.++...... .......+++.++++.+++.+ ..++. +.+|||||||||+|||||+.+|++||
T Consensus 99 v~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lll 168 (249)
T PRK14253 99 IYENVAYGLRAQGI--KDKKVLDEVVERSLRGAALWDEVKDRLKSH--------AFGLSGGQQQRLCIARTIAMEPDVIL 168 (249)
T ss_pred HHHHHHhHHHhcCC--CchHHHHHHHHHHHHHcCCchhhhHHhhcC--------cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999886433211 111222345667888888753 33444 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||||+|||+.++..+.+.|++++ + +.|||++||++ .++..+||++++|++|+++..|+++++
T Consensus 169 lDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 169 MDEPTSALDPIATHKIEELMEELK-K-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999994 4 58999999997 578889999999999999999998765
No 204
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=329.57 Aligned_cols=202 Identities=24% Similarity=0.381 Sum_probs=166.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+.+ |....+|+|.++|+++.. .+++.++|++|++.+++.
T Consensus 56 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~- 134 (286)
T PRK14275 56 KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK- 134 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-
Confidence 48999999999999999999999999999999864 310137999999998742 246789999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.+........ ......+.+.++++.+++. +..++. +..|||||||||+|||||+.+|++|
T Consensus 135 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LSgGq~qrv~LAraL~~~p~ll 204 (286)
T PRK14275 135 SIFDNIAYGPRLHGIN--DKKQLEEIVEKSLRKAALWDEVSDRLDKN--------ALGLSGGQQQRLCVARTLAVEPEIL 204 (286)
T ss_pred CHHHHHHhHHHhcCCC--cHHHHHHHHHHHHHHhCCccchhhHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999865432211 1122234567788888874 344555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ . +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 205 lLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 205 LLDEPTSALDPKATAKIEDLIQELR-G-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999984 4 58999999997 5788899999999999999999988654
No 205
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-44 Score=321.90 Aligned_cols=202 Identities=22% Similarity=0.368 Sum_probs=165.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++.+||+++|+||||||||||+++|+|+.+ |...++|+|+++|+++.. .+++.++|++|++.+++ .
T Consensus 22 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 100 (252)
T PRK14255 22 KGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-F 100 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-C
Confidence 48999999999999999999999999999999875 421137999999998742 24578999999988887 6
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||++|+.+........ ......+.+.++++.+++. +..++. +.+||||||||++|||+|+.+|++|
T Consensus 101 tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~ll 170 (252)
T PRK14255 101 SIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHLHES--------ALSLSGGQQQRVCIARVLAVKPDVI 170 (252)
T ss_pred cHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHHhcC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999865432211 1111123456677777764 334455 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|++++ + +.|||++||++ .++.++||++++|++|+++..|++.+++
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 171 LLDEPTSALDPISSTQIENMLLELR-D-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHH-h-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999994 4 47999999997 5788899999999999999999988654
No 206
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.2e-44 Score=356.49 Aligned_cols=202 Identities=23% Similarity=0.402 Sum_probs=171.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.|+||++++|++++|+||||||||||+++|+|+++ . +|+|+++|+++.. .+++.+||+||++ .+++.
T Consensus 303 ~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 57999999999999999999999999999999985 3 7999999998743 1356799999986 47888
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||.||+.++...+.. ........+++.++++.++|. +..+++ +.+|||||||||+|||||+.+|++|||
T Consensus 379 ~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 379 LNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY--------PAEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred ccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC--------CccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 9999999986543211 011222335678899999997 467777 556999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||+|||+.++..++++|++++++.|.|||++|||+ .++..+||++++|++|+++..|++++++
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999655589999999997 5788999999999999999999988664
No 207
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-44 Score=326.51 Aligned_cols=202 Identities=21% Similarity=0.345 Sum_probs=165.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|+||||||||+++|+|+++ |...++|+|.++|+++.. .+++.++|+||++.+++ .
T Consensus 41 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 119 (271)
T PRK14238 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-K 119 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc-c
Confidence 47999999999999999999999999999999987 211148999999998742 24678999999988887 4
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC----CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL----MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++....... ........+.++++.+++ .+..++. +..||||||||++|||+|+.+|++|
T Consensus 120 tv~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--------~~~LSgGe~qrv~laraL~~~p~ll 189 (271)
T PRK14238 120 SIYDNVTYGPKIHGIK--DKKTLDEIVEKSLRGAAIWDELKDRLHDN--------AYGLSGGQQQRLCIARCLAIEPDVI 189 (271)
T ss_pred cHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHcCCcchHHHHHhcC--------cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999865432111 111222345667777654 3334555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ .+ +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 190 lLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 190 LMDEPTSALDPISTLKVEELVQEL-KK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHH-Hc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 68999999997 5788899999999999999999988653
No 208
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=321.56 Aligned_cols=200 Identities=29% Similarity=0.429 Sum_probs=159.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|+++.. .+++.++|++|++.+++ .||.|
T Consensus 18 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 93 (236)
T cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGY 93 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHH
Confidence 4799999999999999999999999999999999884 8999999998753 34667999999988875 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.++.................+.+.+..+ ++....++. +..|||||||||+|||||+.+|++|||||||
T Consensus 94 nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--------~~~LS~G~~~rl~la~aL~~~p~llllDEP~ 165 (236)
T cd03253 94 NIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGER--------GLKLSGGEKQRVAIARAILKNPPILLLDEAT 165 (236)
T ss_pred HHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC--------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 998753211100000000111123333433 344444444 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.+.|+++ ++ |.|||++||++ .++. .||++++|++|+++..|+++++.
T Consensus 166 ~~LD~~~~~~l~~~l~~~-~~-~~tiii~sh~~-~~~~-~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 166 SALDTHTEREIQAALRDV-SK-GRTTIVIAHRL-STIV-NADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred ccCCHHHHHHHHHHHHHh-cC-CCEEEEEcCCH-HHHH-hCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999998 45 89999999997 4564 59999999999999999887654
No 209
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-44 Score=322.29 Aligned_cols=202 Identities=24% Similarity=0.395 Sum_probs=167.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD--DCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~--~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+.++ ...++|+|.++|+++.. ..++.++|+||++.+++.
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~- 101 (253)
T PRK14261 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK- 101 (253)
T ss_pred eeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-
Confidence 489999999999999999999999999999998753 11137999999998742 245679999999888874
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.|....+... ........+.++++.+++.+ ..++. +..||||||||++|||+|+.+|+++
T Consensus 102 tv~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 171 (253)
T PRK14261 102 SIYENVAYGPRIHGEK--NKKTLDTIVEKSLKGAALWDEVKDRLHDS--------ALSLSGGQQQRLCIARTLAVNPEVI 171 (253)
T ss_pred cHHHHHHhhHHhcCCC--CHHHHHHHHHHHHHHhcCchhhHHHhhcC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999875443211 11222345677888888743 24455 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 172 lLDEP~~gLD~~~~~~l~~~l~~~~-~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 172 LMDEPCSALDPIATAKIEDLIEDLK-K-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHh-h-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 9999999999999999999999994 4 58999999997 4788899999999999999999998654
No 210
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-44 Score=325.34 Aligned_cols=202 Identities=26% Similarity=0.403 Sum_probs=168.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. ..++|+|+++|.++.. .+++.++|++|++.+++.
T Consensus 42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~- 120 (272)
T PRK14236 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK- 120 (272)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-
Confidence 5899999999999999999999999999999998741 0147999999998742 246789999999888886
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.+........ ......+.+.++++.+++.+ ..++. +.+|||||||||+|||||+.+|++|
T Consensus 121 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~ll 190 (272)
T PRK14236 121 SIYENVVYGLRLQGIN--NRRVLDEAVERSLRGAALWDEVKDRLHEN--------AFGLSGGQQQRLVIARAIAIEPEVL 190 (272)
T ss_pred cHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHcCCChhHHHHhhCC--------cccCCHHHHHHHHHHHHHHCCCCEE
Confidence 9999998865432211 11122345677888888853 34555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 191 lLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 191 LLDEPTSALDPISTLKIEELITELK-S-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHH-h-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999999999999994 4 68999999997 5788899999999999999999988653
No 211
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=362.39 Aligned_cols=202 Identities=22% Similarity=0.332 Sum_probs=172.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC-------------c----cc-cccEEEE
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-------------G----KF-RSACGFM 65 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~-------------~----~~-~~~ig~v 65 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|..+. . .+ ++.||||
T Consensus 33 ~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 33 RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred EeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 4799999999999999999999999999999999984 799999997441 0 12 2479999
Q ss_pred ccCC--CCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHH
Q psy2520 66 YQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSF 140 (290)
Q Consensus 66 ~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~i 140 (290)
||++ .+++.+||.||+.++...+.. .......+++.++++.+||.+ ..+++ +.+|||||||||+|
T Consensus 110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------~~~LSgGq~QRv~i 179 (623)
T PRK10261 110 FQEPMTSLNPVFTVGEQIAESIRLHQG--ASREEAMVEAKRMLDQVRIPEAQTILSRY--------PHQLSGGMRQRVMI 179 (623)
T ss_pred EeCchhhcCCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHCCCCChhhHHhCC--------CccCCHHHHHHHHH
Confidence 9997 678889999999997654211 122333456789999999964 45677 55699999999999
Q ss_pred HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 141 ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 141 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+||+.+|++|||||||++||+.++.+++++|++++++.|+|||+||||+ .++..+||||++|++|+++..|++++++
T Consensus 180 A~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 180 AMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 99999999999999999999999999999999999655689999999997 5788999999999999999999988764
No 212
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-44 Score=323.18 Aligned_cols=204 Identities=23% Similarity=0.336 Sum_probs=167.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|.. ..+|+|+++|+++.. .+++.++|+||++.++ .+
T Consensus 25 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~ 103 (261)
T PRK14263 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SM 103 (261)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cc
Confidence 57999999999999999999999999999999997610 137999999998742 2456799999998877 58
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|++||+.++...... . ......+.++++.+++.+........ .+.+|||||+||++|||||+.+|++|||||
T Consensus 104 tv~enl~~~~~~~~~---~-~~~~~~~~~~l~~~~l~~~i~~~~~~----~~~~LS~G~~qrv~laral~~~p~llllDE 175 (261)
T PRK14263 104 SIFDNVAFGLRLNRY---K-GDLGDRVKHALQGAALWDEVKDKLKV----SGLSLSGGQQQRLCIARAIATEPEVLLLDE 175 (261)
T ss_pred cHHHHHHHHHhhcCc---h-HHHHHHHHHHHHHcCCchhhhhhhhC----CcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999999987543321 1 12234577889999985432211111 145699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe--------CCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--------DSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~--------~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+++.|+++ .+ +.|||++||++ .++.++||++++|+ +|+++..|++++++
T Consensus 176 PtsgLD~~~~~~l~~~l~~~-~~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 176 PCSALDPIATRRVEELMVEL-KK-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred CCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 99999999999999999999 44 68999999997 47889999999996 89999999998764
No 213
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-44 Score=332.78 Aligned_cols=206 Identities=21% Similarity=0.327 Sum_probs=169.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||+|++||+++|+|||||||||||++|+|+.++. ...+|+|.++|+++.. .+++.++|+||++.+++ .
T Consensus 99 ~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ 177 (329)
T PRK14257 99 HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-M 177 (329)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-C
Confidence 5899999999999999999999999999999998631 0147999999999852 35778999999988875 7
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|++||+.|+....... ......+.+.++++.++|.+..+..+++. +..|||||||||+|||||+.+|+||||||
T Consensus 178 ti~eNi~~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~l~~~~~~~----~~~LSgGqkqRl~LARAl~~~p~IlLLDE 251 (329)
T PRK14257 178 SIFDNVAYGPRNNGIN--DRKILEKIVEKSLKSAALWDEVKDDLDKA----GNALSGGQQQRLCIARAIALEPEVLLMDE 251 (329)
T ss_pred cHHHHHHhHHHhcCCC--hHHHHHHHHHHHHHHcCCcchhhhhhhCC----cccCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9999999865332111 12222334667888888754333333332 56699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||++||+.+...+.+.|+++. + ++|||++||++ ..+.++||||++|++|+++..|++.+++
T Consensus 252 Pts~LD~~~~~~i~~~i~~l~-~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 252 PTSALDPIATAKIEELILELK-K-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred CcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999984 4 68999999997 5788899999999999999999999775
No 214
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.4e-45 Score=366.28 Aligned_cols=203 Identities=28% Similarity=0.419 Sum_probs=171.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+|++|+|||.+||+|+||||||||+|+|+|++.|. +|+|.+||.++.. .+|++||||+|++.+|.. |++|
T Consensus 490 ~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~e 565 (709)
T COG2274 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRE 565 (709)
T ss_pred hceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHH
Confidence 4899999999999999999999999999999999994 8999999999865 489999999999887764 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.++......+......+...+.+.+. .+..-+++.+++. ..+||||||||++|||||+++|+|||||||||+
T Consensus 566 Ni~l~~p~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E~----G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSa 639 (709)
T COG2274 566 NIALGNPEATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGEG----GANLSGGQRQRLALARALLSKPKILLLDEATSA 639 (709)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHH--hcccccccccccC----CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 9998754322222222222222333333 3566788899886 456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+.+...+.+.|.++. .|+|+|+++|++ ...+.||||++|++|+++.+|+.++++.
T Consensus 640 LD~~sE~~I~~~L~~~~--~~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 640 LDPETEAIILQNLLQIL--QGRTVIIIAHRL--STIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred cCHhHHHHHHHHHHHHh--cCCeEEEEEccc--hHhhhccEEEEccCCceeccCCHHHHHH
Confidence 99999999999999983 379999999997 4688999999999999999999998764
No 215
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=353.04 Aligned_cols=199 Identities=28% Similarity=0.371 Sum_probs=169.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.+||+||++.+++.+||.
T Consensus 21 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK11288 21 DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVA 97 (501)
T ss_pred eeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHH
Confidence 4899999999999999999999999999999999984 8999999998742 2457899999999899999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...............+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 169 (501)
T PRK11288 98 ENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP--------LKYLSIGQRQMVEIAKALARNARVIAFDEPTS 169 (501)
T ss_pred HHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc--------hhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 9999853211101011222335678899999998777777 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 215 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~ 215 (290)
|||+.++..+.++|++++ +.|.|||++||++ .++..+||++++|++|+++..++.
T Consensus 170 ~LD~~~~~~l~~~l~~~~-~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 170 SLSAREIEQLFRVIRELR-AEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999994 4589999999997 578899999999999999876653
No 216
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.4e-44 Score=353.64 Aligned_cols=201 Identities=23% Similarity=0.330 Sum_probs=170.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEEC-CEe---cCc-------cccccEEEEccCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVN-GKP---VEG-------KFRSACGFMYQHDLFS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~-G~~---~~~-------~~~~~ig~v~Q~~~~~ 72 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++ |.+ +.. .+++.+||+||++.++
T Consensus 301 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 377 (520)
T TIGR03269 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY 377 (520)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence 4799999999999999999999999999999999984 8999996 642 211 1345799999998889
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
+.+||+||+.+...... ......+++.++++.++|.+ ..+++ +.+|||||||||+|||||+.+
T Consensus 378 ~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~~LSgGq~qrv~laral~~~ 445 (520)
T TIGR03269 378 PHRTVLDNLTEAIGLEL----PDELARMKAVITLKMVGFDEEKAEEILDKY--------PDELSEGERHRVALAQVLIKE 445 (520)
T ss_pred CCCcHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCCCCCccchhhhhCC--------hhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987543211 11222345778999999975 45677 556999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 148 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 148 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|++|||||||+|||+.++..+++.|++++++.|.|||++|||+ .++.++||++++|++|++++.|++++++.
T Consensus 446 p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 446 PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999655589999999997 57889999999999999999999887653
No 217
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-44 Score=324.71 Aligned_cols=202 Identities=24% Similarity=0.387 Sum_probs=168.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|.++.. .+++.++|+||++.+++ .|
T Consensus 38 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~t 116 (276)
T PRK14271 38 DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MS 116 (276)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-cc
Confidence 5899999999999999999999999999999998851 0147999999998742 24678999999988887 79
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc----cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS----QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
++||+.++...... .........+.++++.+++.+. .++. +..||||||||++|||||+.+|++||
T Consensus 117 v~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--------~~~LSgGq~qrl~LAral~~~p~lll 186 (276)
T PRK14271 117 IMDNVLAGVRAHKL--VPRKEFRGVAQARLTEVGLWDAVKDRLSDS--------PFRLSGGQQQLLCLARTLAVNPEVLL 186 (276)
T ss_pred HHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCCCchhhhHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999886532211 1122223445678888998643 3444 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 187 LDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 187 LDEPTSALDPTTTEKIEEFIRSLA-D-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999994 4 48999999997 5788999999999999999999998764
No 218
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.5e-44 Score=359.85 Aligned_cols=201 Identities=27% Similarity=0.365 Sum_probs=164.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.+||+||||||||||+++|+|++ |. +|+|.+||.++.. .+|+.|+||+|++.+|+. |++|
T Consensus 367 ~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~e 441 (588)
T PRK11174 367 GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRD 441 (588)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHH
Confidence 5899999999999999999999999999999999 73 7999999999865 478899999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||.++..-....+.....+...+.+.++. +++..++.+|+.+ ..||||||||++|||||+++|++||||||||+
T Consensus 442 NI~~g~~~~~~eei~~al~~a~l~~~i~~--lp~G~dT~vge~G----~~LSGGQrQRialARAll~~~~IliLDE~TSa 515 (588)
T PRK11174 442 NVLLGNPDASDEQLQQALENAWVSEFLPL--LPQGLDTPIGDQA----AGLSVGQAQRLALARALLQPCQLLLLDEPTAS 515 (588)
T ss_pred HhhcCCCCCCHHHHHHHHHHhCHHHHHHh--cccccccccccCC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 99986321111111111111112222322 3455688888753 45999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+.+...+.+.|+++ . +++|+|++||+++ ..+.||+|++|++|+++..|+.++++
T Consensus 516 LD~~te~~i~~~l~~~-~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 516 LDAHSEQLVMQALNAA-S-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred CCHHHHHHHHHHHHHH-h-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHH
Confidence 9999999999999998 3 3799999999973 56779999999999999999999775
No 219
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=6.3e-44 Score=319.80 Aligned_cols=202 Identities=22% Similarity=0.273 Sum_probs=166.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcC--CCCCCCCccEEEECCEecCc----cccc-cEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG----KFRS-ACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~--~~~~~~~~G~I~i~G~~~~~----~~~~-~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|+++|.++.. ..++ .++|++|++.+++.+|
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 100 (252)
T CHL00131 24 KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVS 100 (252)
T ss_pred ecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcccCChhhhheeeEEEEecccccccccc
Confidence 479999999999999999999999999999998 456 48999999998753 1222 4889999999999999
Q ss_pred HHHHHHHHHHhcCc----hhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCC-CCChHHHHHHHHHHHHHhCCCe
Q psy2520 77 VYEHLYFMALLKLD----RRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKV-VLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 77 v~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~-~LSgGqrqRv~ia~aL~~~p~l 150 (290)
+.+++.+....... ......+....+.++++.+++. ...++. +. .|||||||||+|||||+.+|++
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~~LSgG~~qrv~la~al~~~p~l 172 (252)
T CHL00131 101 NADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN--------VNEGFSGGEKKRNEILQMALLDSEL 172 (252)
T ss_pred HHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc--------cccCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999875432110 0111122234567889999997 356666 33 3999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCeEEEEcCHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||||||+|||+.++..+.++|++++ ++|.|||++||++ .++..+ ||++++|++|++++.|+++.+
T Consensus 173 lllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 173 AILDETDSGLDIDALKIIAEGINKLM-TSENSIILITHYQ-RLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999985 4589999999997 456666 899999999999999988843
No 220
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.4e-44 Score=353.33 Aligned_cols=205 Identities=26% Similarity=0.405 Sum_probs=171.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc-------ccc-ccEEEEccCCC--C
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG-------KFR-SACGFMYQHDL--F 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~-------~~~-~~ig~v~Q~~~--~ 71 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|. ..++|+|.++|+++.. .++ +.+||+||++. +
T Consensus 26 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~ 105 (529)
T PRK15134 26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSL 105 (529)
T ss_pred eceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhc
Confidence 5899999999999999999999999999999999862 1137999999998743 122 57999999864 6
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
++.+|+.+++.+....... .......+++.++++.++|.+ ..+++ +.+|||||||||+|||||+.+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------~~~LSgGe~qrv~iAraL~~~p 175 (529)
T PRK15134 106 NPLHTLEKQLYEVLSLHRG--MRREAARGEILNCLDRVGIRQAAKRLTDY--------PHQLSGGERQRVMIAMALLTRP 175 (529)
T ss_pred CchhhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHCCCCChHHHHhhC--------CcccCHHHHHHHHHHHHHhcCC
Confidence 6778999998865432111 122333456789999999976 34677 5569999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
++|||||||++||+.++..++++|++++++.|.|||+|||++ .++..+||+|++|++|++++.|++++++
T Consensus 176 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 176 ELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred CEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999655589999999997 4788899999999999999999988764
No 221
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.2e-44 Score=352.37 Aligned_cols=203 Identities=24% Similarity=0.337 Sum_probs=170.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.||||++++|++++|+|||||||||||++|+|+++|. .++|+|.++|+++.. ..++.+||+||++.+++.+||+
T Consensus 18 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 96 (500)
T TIGR02633 18 DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVA 96 (500)
T ss_pred cceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHH
Confidence 5899999999999999999999999999999999862 137999999998753 1346799999999899999999
Q ss_pred HHHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCcc-CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 79 EHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQ-HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 79 e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
||+.++....... ........+++.++++.+++.+.. ++. +.+|||||||||+|||||+.+|++||||||
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~~qrv~iA~al~~~p~lllLDEP 168 (500)
T TIGR02633 97 ENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP--------VGDYGGGQQQLVEIAKALNKQARLLILDEP 168 (500)
T ss_pred HHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc--------hhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 9998864322100 011222335678899999998654 455 445999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
|+|||+.++..+.+.|++++ +.|.|||++||++ .++..+||++++|++|+++..|++++
T Consensus 169 t~~LD~~~~~~l~~~l~~l~-~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 169 SSSLTEKETEILLDIIRDLK-AHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred CCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999995 5589999999997 57889999999999999999887654
No 222
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.8e-44 Score=318.62 Aligned_cols=193 Identities=24% Similarity=0.335 Sum_probs=161.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+++.++|+||++.+++ .||+|
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~e 99 (225)
T PRK10247 24 NNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYD 99 (225)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHH
Confidence 5899999999999999999999999999999999884 8999999998753 24568999999988887 49999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.+........ ...+.+.++++.+++. ...++. +..|||||+|||+|||||+.+|+++||||||+
T Consensus 100 nl~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (225)
T PRK10247 100 NLIFPWQIRNQQ-----PDPAIFLDDLERFALPDTILTKN--------IAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 (225)
T ss_pred HHHhHHhhcCCC-----hHHHHHHHHHHHcCCChHHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 998864332111 1123467899999996 466777 45699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe-CCeEEEEcCH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DSRTAFIGSK 215 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~-~G~i~~~g~~ 215 (290)
|||+.++..+.+.|++++++.|.|||++||++ .++ ..||++++|+ ++..+.+|..
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~-~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEI-NHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHH-HhCCEEEEEecccchHhhhhh
Confidence 99999999999999998655689999999997 456 5799999995 5555555543
No 223
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-44 Score=311.81 Aligned_cols=176 Identities=34% Similarity=0.566 Sum_probs=148.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+||||||||||+++|+|+++|...++|+|.++|.++.. ..++.++|++|++.+++.+||+||
T Consensus 24 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 103 (202)
T cd03233 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRET 103 (202)
T ss_pred eeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHH
Confidence 48999999999999999999999999999999998311148999999998753 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+..... .++. +..||||||||++|||||+.+|++|||||||+||
T Consensus 104 l~~~~~~~--------------------------~~~~--------~~~LS~Ge~qrl~laral~~~p~llllDEPt~~L 149 (202)
T cd03233 104 LDFALRCK--------------------------GNEF--------VRGISGGERKRVSIAEALVSRASVLCWDNSTRGL 149 (202)
T ss_pred Hhhhhhhc--------------------------cccc--------hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccC
Confidence 98753210 2334 4459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+.++..+++.|++++++.+.|+|+++|+...++.++||++++|++|+++..|
T Consensus 150 D~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 150 DSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999955446676666554335788999999999999998654
No 224
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-44 Score=325.55 Aligned_cols=200 Identities=23% Similarity=0.368 Sum_probs=166.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||+|++||+++|+|||||||||||++|+|+++|.. ..+|+|+++|+++.. .+++.++|+||++.+++.
T Consensus 56 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~- 134 (285)
T PRK14254 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK- 134 (285)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-
Confidence 48999999999999999999999999999999986310 147999999998742 246789999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.+....... .. ....++.++++.+++.. ..++. +.+|||||||||+|||||+.+|++|
T Consensus 135 tv~enl~~~~~~~~~---~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--------~~~LSgGe~qrv~LAraL~~~p~lL 202 (285)
T PRK14254 135 SIYDNVAYGLKIQGY---DG-DIDERVEESLRRAALWDEVKDQLDSS--------GLDLSGGQQQRLCIARAIAPDPEVI 202 (285)
T ss_pred CHHHHHHHHHHHcCC---cH-HHHHHHHHHHHHcCCCchhHHHHhCC--------cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999886543321 11 22345778899998853 44555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE-EEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII-LLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|++++ + +.|||++||++ .++..+|||++ +|++|+++..|+++++.
T Consensus 203 LLDEPts~LD~~~~~~l~~~L~~~~-~-~~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 203 LMDEPASALDPVATSKIEDLIEELA-E-EYTVVIVTHNM-QQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 9999999999999999999999994 4 37999999997 57888999975 67999999999988653
No 225
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.3e-44 Score=351.86 Aligned_cols=203 Identities=26% Similarity=0.305 Sum_probs=171.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCCccEEEEC-----------------------CEecC---
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVN-----------------------GKPVE--- 55 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~~~~G~I~i~-----------------------G~~~~--- 55 (290)
.|+||++.+|++++|+|||||||||||++|+|++ +| ++|+|.++ |.++.
T Consensus 17 ~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 93 (520)
T TIGR03269 17 KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEE 93 (520)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEEEEeccccccccccccccccccccccccccccccc
Confidence 4899999999999999999999999999999997 57 47999997 32220
Q ss_pred -------c----cccccEEEEccC-CCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcC
Q psy2520 56 -------G----KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123 (290)
Q Consensus 56 -------~----~~~~~ig~v~Q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~ 123 (290)
. .+++.++|+||+ +.+++.+||+||+.+....... ...+..+++.++++.+||.+..++.
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~----- 165 (520)
T TIGR03269 94 VDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGY---EGKEAVGRAVDLIEMVQLSHRITHI----- 165 (520)
T ss_pred hhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCChhhhhcC-----
Confidence 0 135679999997 6788889999999986543321 1223345678999999998888887
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 124 ~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
+.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|.|||+||||+ ..+.++||++++
T Consensus 166 ---~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~i~~ 241 (520)
T TIGR03269 166 ---ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP-EVIEDLSDKAIW 241 (520)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEE
Confidence 4559999999999999999999999999999999999999999999999655689999999997 478889999999
Q ss_pred EeCCeEEEEcCHHHHHHH
Q psy2520 204 LADSRTAFIGSKDAALAF 221 (290)
Q Consensus 204 l~~G~i~~~g~~~~~~~~ 221 (290)
|++|++++.|++++++..
T Consensus 242 l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 242 LENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EeCCEEeeecCHHHHHHH
Confidence 999999999998877653
No 226
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-44 Score=325.65 Aligned_cols=202 Identities=22% Similarity=0.358 Sum_probs=165.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccc-cccEEEEccCCCCC--CCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF-RSACGFMYQHDLFS--PSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~-~~~ig~v~Q~~~~~--~~lTv~e~ 80 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... ++.++|+||++.+. ...++.++
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~ 100 (272)
T PRK15056 24 RDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDV 100 (272)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhh
Confidence 4899999999999999999999999999999999984 899999999875433 34699999987542 23478888
Q ss_pred HHHHHHhc-CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 81 LYFMALLK-LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 81 l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
+.++.... .............+.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||||+|
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgG~~qrv~laraL~~~p~llllDEPt~~ 172 (272)
T PRK15056 101 VMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ--------IGELSGGQKKRVFLARAIAQQGQVILLDEPFTG 172 (272)
T ss_pred eecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 86542110 000001112234567889999998888887 455999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+.++..+.++|++++ ++|.|||++||++ .++.++||+++++ +|+++..|++++++
T Consensus 173 LD~~~~~~l~~~L~~~~-~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 173 VDVKTEARIISLLRELR-DEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred CCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 99999999999999995 4589999999997 5788999999877 89999999988653
No 227
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-44 Score=352.22 Aligned_cols=199 Identities=21% Similarity=0.369 Sum_probs=168.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccC---CCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQH---DLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~---~~~~~~l 75 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|+++|+++.. ..++.+||+||+ ..+++.+
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 5899999999999999999999999999999999984 7999999998743 235679999998 4688899
Q ss_pred CHHHHHHHHHHhc---Cc---hhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 76 TVYEHLYFMALLK---LD---RRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 76 Tv~e~l~~~~~~~---~~---~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
||+||+.+....+ .. .........+.+.++++.+++. +..+++ +.+|||||||||+|||||+.+|
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGq~qrv~lAral~~~p 428 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN--------ITELSGGNQQKVLISKWLCCCP 428 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCc--------cccCChHHHHHHHHHHHHhcCC
Confidence 9999998753211 00 0001112234578899999996 778888 4559999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCH
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 215 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~ 215 (290)
++|||||||+|||+.++..++++|++++ +.|.|||++|||+ .++..+||++++|++|+++..++.
T Consensus 429 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 429 EVIIFDEPTRGIDVGAKAEIYKVMRQLA-DDGKVILMVSSEL-PEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHHHH-HCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999995 4589999999997 578899999999999999988765
No 228
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.9e-44 Score=316.77 Aligned_cols=193 Identities=29% Similarity=0.388 Sum_probs=156.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. .+++.++|++|++.+++ .||.|
T Consensus 21 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 96 (220)
T cd03245 21 DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRD 96 (220)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHH
Confidence 4899999999999999999999999999999999884 7999999998743 24567999999988876 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccC---CcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG---SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~---~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+.+..... . ...+.++++.+++.+..++.+. ......+.+||||||||++|||||+.+|++||||||
T Consensus 97 ~l~~~~~~~-----~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEP 167 (220)
T cd03245 97 NITLGAPLA-----D----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEP 167 (220)
T ss_pred HhhcCCCCC-----C----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 997642110 1 1234567777777665554321 000001356999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+|||+.++..+++.|++++ +. .|||++||++. .+ ++||++++|++|++++.|
T Consensus 168 t~~LD~~~~~~l~~~l~~~~-~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 168 TSAMDMNSEERLKERLRQLL-GD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred cccCCHHHHHHHHHHHHHhc-CC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999984 43 89999999974 44 799999999999997654
No 229
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-44 Score=352.13 Aligned_cols=202 Identities=20% Similarity=0.341 Sum_probs=169.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC-CCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP-DDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~-~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~ 74 (290)
.|+||++++||+++|+||||||||||+++|+|+++ |+ +|+|.++|+++.. ..++.++|++|++ .+++.
T Consensus 279 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (506)
T PRK13549 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV 355 (506)
T ss_pred cceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence 57999999999999999999999999999999998 44 7999999998752 1356799999985 47888
Q ss_pred CCHHHHHHHHHH--hcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 75 LTVYEHLYFMAL--LKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 75 lTv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
+||.||+.+... .............+.+.++++.+++. +..+++ +.+|||||||||+|||||+.+|++|
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~kqrv~lA~al~~~p~ll 427 (506)
T PRK13549 356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA--------IARLSGGNQQKAVLAKCLLLNPKIL 427 (506)
T ss_pred CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc--------cccCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999987532 11100011222335678899999996 567887 4559999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
||||||+|||+.++..++++|+++++ .|.|||++|||+ .++.++||++++|++|+++..|+++++
T Consensus 428 lLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 428 ILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999954 589999999997 578899999999999999998877653
No 230
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=322.29 Aligned_cols=200 Identities=21% Similarity=0.354 Sum_probs=165.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|+++.. .+++.++|+||++.+++.
T Consensus 37 ~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~- 115 (274)
T PRK14265 37 VDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK- 115 (274)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-
Confidence 4899999999999999999999999999999998631 1137999999998742 246789999999888874
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.++....... . ...+.+.++++.+++. +..++. +..|||||||||+|||||+.+|++|
T Consensus 116 tv~~nl~~~~~~~~~~---~-~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LSgGq~qrv~LAraL~~~p~ll 183 (274)
T PRK14265 116 SIYENIAFAPRANGYK---G-NLDELVEDSLRRAAIWEEVKDKLKEK--------GTALSGGQQQRLCIARAIAMKPDVL 183 (274)
T ss_pred cHHHHHHhHHHhcCch---H-HHHHHHHHHHHHcccchhhHHHhcCC--------cccCCHHHHHHHHHHHHHhhCCCEE
Confidence 9999998865432111 1 1123356677777763 334555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe---------CCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA---------DSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~---------~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++.++||++++|+ +|+++..|++++++
T Consensus 184 lLDEPt~~LD~~~~~~l~~~L~~~-~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 184 LMDEPCSALDPISTRQVEELCLEL-KE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999999999999999999999999 44 68999999997 57889999999997 89999999998764
No 231
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=318.83 Aligned_cols=200 Identities=26% Similarity=0.427 Sum_probs=166.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEEC------CEecCc----cccccEEEEccCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVN------GKPVEG----KFRSACGFMYQHDLFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~------G~~~~~----~~~~~ig~v~Q~~~~~~ 73 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|. +|+|.++ |.++.. .+++.++|++|++.+++
T Consensus 27 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 103 (257)
T PRK14246 27 KDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFP 103 (257)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCC
Confidence 5899999999999999999999999999999999984 5555555 455432 24678999999999999
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
.+||+||+.+....... .......+.+.++++.+++.. ..++. +..||+|||||++|||||+.+|+
T Consensus 104 ~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~LS~G~~qrl~laral~~~P~ 173 (257)
T PRK14246 104 HLSIYDNIAYPLKSHGI--KEKREIKKIVEECLRKVGLWKEVYDRLNSP--------ASQLSGGQQQRLTIARALALKPK 173 (257)
T ss_pred CCcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCccchhhhcCC--------cccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999987543211 112223345778899999863 34555 55699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
++||||||+|||+.++..+.+.|.++ ++ +.|||++||++ ..+..+||++++|++|+++..|+++++.
T Consensus 174 llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 174 VLLMDEPTSMIDIVNSQAIEKLITEL-KN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHH-hc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999998 44 58999999997 5778899999999999999999988654
No 232
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-44 Score=321.28 Aligned_cols=200 Identities=21% Similarity=0.341 Sum_probs=165.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD--DCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~--~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|++++ ...++|+|+++|+++.. .+++.++|++|++.+++ .
T Consensus 27 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~ 105 (264)
T PRK14243 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-K 105 (264)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-c
Confidence 579999999999999999999999999999999753 10147999999998731 24667999999988887 4
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.+........ ....+.+.++++.+++.+ ..++. +.+||||||||++|||||+.+|++|
T Consensus 106 tv~enl~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LSgGq~qrv~laral~~~p~ll 173 (264)
T PRK14243 106 SIYDNIAYGARINGYK----GDMDELVERSLRQAALWDEVKDKLKQS--------GLSLSGGQQQRLCIARAIAVQPEVI 173 (264)
T ss_pred cHHHHHHhhhhhcCcc----hHHHHHHHHHHHHhCchhhHHHHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998865432111 112234566777777743 34444 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe---------CCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA---------DSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~---------~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ + +.|||++||++ .++..+||++++|+ +|+++..|+++++.
T Consensus 174 lLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 174 LMDEPCSALDPISTLRIEELMHELK-E-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999999999999999999994 4 48999999997 57899999999998 89999999998764
No 233
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5e-44 Score=311.25 Aligned_cols=182 Identities=25% Similarity=0.332 Sum_probs=157.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++.+++.+||.||
T Consensus 18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~ 94 (204)
T PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALEN 94 (204)
T ss_pred ecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHH
Confidence 4899999999999999999999999999999999984 8999999998753 356789999999989999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....... ...+.+.++++.+|+.+..++. +..||||||||++||+||+.+|+++||||||++|
T Consensus 95 l~~~~~~~~~------~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 95 LRFYQRLHGP------GDDEALWEALAQVGLAGFEDVP--------VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred HHHHHHhcCc------cHHHHHHHHHHHcCCHHHhhCC--------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 9887543211 1224567899999998777777 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
|+.++..+.++|++++ ++|.|||++||++ .++....+|++++
T Consensus 161 D~~~~~~l~~~l~~~~-~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 161 DKQGVARLEALLAQHA-EQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred CHHHHHHHHHHHHHHH-HCCCEEEEEecCh-hhhccCCceEEec
Confidence 9999999999999985 4588999999997 4676766787776
No 234
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=317.11 Aligned_cols=202 Identities=19% Similarity=0.328 Sum_probs=167.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++.+||+++|+||||||||||+++|+|+.. |....+|+|.++|+++.. ..++.++|+||++.+++.
T Consensus 20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~- 98 (250)
T PRK14266 20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK- 98 (250)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-
Confidence 58999999999999999999999999999999864 211147999999998742 246789999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|+.||+.++....... ......+++.++++.+++.+ ..++. +..||||||||++|||||+.+|++|
T Consensus 99 t~~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~ll 168 (250)
T PRK14266 99 SIFDNVAYGLRIHGED--DEDFIEERVEESLKAAALWDEVKDKLDKS--------ALGLSGGQQQRLCIARTIAVSPEVI 168 (250)
T ss_pred hHHHHHHhHHhhcCCC--CHHHHHHHHHHHHHHcCCchhHHHHHhCC--------cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998764322111 11223355778888888853 33444 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++..++|++++|++|++++.|+++++.
T Consensus 169 llDEP~~gLD~~~~~~l~~~l~~~-~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 169 LMDEPCSALDPISTTKIEDLIHKL-KE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999 44 78999999997 5789999999999999999999998653
No 235
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-44 Score=307.43 Aligned_cols=203 Identities=28% Similarity=0.385 Sum_probs=174.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
+++|+++.|||+++|+||||||||||||.|+|-+.|+ +|++.++|.++.. .+.+.-+.+||+..+-...||+|
T Consensus 18 ~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~e 94 (259)
T COG4559 18 DGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQE 94 (259)
T ss_pred cCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHH
Confidence 5899999999999999999999999999999999995 7999999999865 35677899999987766679999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh------CCCeEEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT------DPALLLC 153 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~------~p~llll 153 (290)
-+.++..-..... ...+..+.+..+|...++.+++.+. ...|||||||||.+||+|++ ++++|+|
T Consensus 95 VV~mGr~p~~~g~-~~~e~~~i~~~ala~~d~~~la~R~--------y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~L 165 (259)
T COG4559 95 VVQMGRIPHRSGR-EPEEDERIAAQALAATDLSGLAGRD--------YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFL 165 (259)
T ss_pred HHHhcccccccCC-CchhhHHHHHHHHHHcChhhhhccc--------hhhcCchHHHHHHHHHHHHHccCCCCCCceEEe
Confidence 9999864322111 1123334567899999999999888 45599999999999999985 5568999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||+||...+..++++.++++++ |..|++|-||++ ....|||||++|++|+++..|+|.+++.
T Consensus 166 DEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 166 DEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred cCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccch-HHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 9999999999999999999999765 789999999985 7889999999999999999999998764
No 236
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.6e-44 Score=350.23 Aligned_cols=202 Identities=19% Similarity=0.360 Sum_probs=170.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~l 75 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+||++|++ .+++.+
T Consensus 269 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 269 NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred ccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 5899999999999999999999999999999999984 7999999998753 2356799999985 578889
Q ss_pred CHHHHHHHHHHhcCc---hhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLD---RRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.+....... .........+.+.++++.+++. +..+++ +.+|||||||||+|||||+.+|++|
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGekqrv~lA~al~~~p~ll 417 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA--------IGLLSGGNQQKVAIARGLMTRPKVL 417 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc--------hhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999875321100 0011122235578899999995 677888 4559999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
||||||+|||+.++..+.++|++++. .|.|||++|||+ .++..+||++++|++|+++..|+++++
T Consensus 418 lLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999954 589999999997 578999999999999999998887654
No 237
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-44 Score=351.22 Aligned_cols=202 Identities=21% Similarity=0.302 Sum_probs=170.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.++|+||++ .+++.+
T Consensus 270 ~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 5899999999999999999999999999999999984 7999999998742 2356799999985 488899
Q ss_pred CHHHHHHHHHHhcCc--h-hhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLD--R-RVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|+.||+.++...... . ........+.+.++++.+++. +..+++ +..|||||||||+||+||+.+|++|
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGq~qrl~la~al~~~p~ll 418 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL--------IMNLSGGNQQKAILGRWLSEDMKVI 418 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc--------cccCCHHHHHHHHHHHHHccCCCEE
Confidence 999999875321100 0 001122234578899999994 677888 4559999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
||||||+|||+.++..++++|++++ +.|.|||++|||+ .++.++||++++|++|++++.|+++++
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELA-AQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHH-hCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999995 4589999999997 578999999999999999999987753
No 238
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-44 Score=307.32 Aligned_cols=166 Identities=44% Similarity=0.773 Sum_probs=147.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++|++++|+|||||||||||++|+|+.+ | .+|+|.++|+++...+++.++|++|++.+++.+||+||+
T Consensus 24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (192)
T cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV---ITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREAL 100 (192)
T ss_pred EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---cceEEEECCEehHHHhhhceEEecccCccccCCcHHHHH
Confidence 47999999999999999999999999999999864 5 489999999987644567899999999889999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+.... + . ||||||||++|||||+.+|++|||||||++||
T Consensus 101 ~~~~~~-------------------~----------~-----------LSgGe~qrv~la~al~~~p~vlllDEP~~~LD 140 (192)
T cd03232 101 RFSALL-------------------R----------G-----------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140 (192)
T ss_pred HHHHHH-------------------h----------c-----------CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCC
Confidence 874210 0 2 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC-CeEEEEc
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTAFIG 213 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~-G~i~~~g 213 (290)
+.++..+++.|++++ +.|.|||++||++..++..+||++++|++ |++++.|
T Consensus 141 ~~~~~~l~~~l~~~~-~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 141 SQAAYNIVRFLKKLA-DSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHHHH-HcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999984 45899999999974246789999999999 9998765
No 239
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.2e-43 Score=306.71 Aligned_cols=166 Identities=49% Similarity=0.844 Sum_probs=148.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++|++++|+||||||||||+++|+|++ +|. +|+|.++|+++.. .+++.++|+||++.+++.+|++||
T Consensus 26 ~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 102 (194)
T cd03213 26 KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRET 102 (194)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHH
Confidence 4899999999999999999999999999999999 884 8999999998864 356789999999989999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+..... . ||||||||++|||||+.+|+++||||||++|
T Consensus 103 i~~~~~~~-----------------------------~-----------LS~G~~qrv~laral~~~p~illlDEP~~~L 142 (194)
T cd03213 103 LMFAAKLR-----------------------------G-----------LSGGERKRVSIALELVSNPSLLFLDEPTSGL 142 (194)
T ss_pred HHHHHHhc-----------------------------c-----------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 97642110 2 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+.++..+.+.|++++ ++|+|+|++||++..++..+||++++|++|++++.|
T Consensus 143 D~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 143 DSSSALQVMSLLRRLA-DTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999984 458999999999743678899999999999998654
No 240
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.9e-44 Score=349.68 Aligned_cols=202 Identities=19% Similarity=0.314 Sum_probs=169.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~l 75 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. ..++.++|+||++ .+++.+
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 5899999999999999999999999999999999984 7999999998753 1345799999974 478889
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
|+.+|+.+................+.+.++++.+++. +..+++ +.+|||||||||+|||||+.+|++||||
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~kqrl~la~al~~~p~lLlLD 428 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA--------ARTLSGGNQQKVLIAKCLEASPQLLIVD 428 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc--------cccCCcHHHHHHHHHHHHhhCCCEEEEC
Confidence 9999986432110000001112234578899999997 678888 4559999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||+|||+.++..+.++|++++. .|.|||++|||+ .++.++||++++|++|+++..|+++++
T Consensus 429 EPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 429 EPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred CCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999954 589999999997 588999999999999999998877643
No 241
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.5e-43 Score=312.71 Aligned_cols=186 Identities=28% Similarity=0.346 Sum_probs=156.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..+...+++.+||.||+.+
T Consensus 39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--------~~~~~~~~~~~tv~enl~~ 107 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSL--------LGLGGGFNPELTGRENIYL 107 (224)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchh--------hcccccCCCCCcHHHHHHH
Confidence 4899999999999999999999999999999999984 8999999987531 1112345677899999988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....... ......+.+.++++.+++.+..++. +.+||||||||++|||+|+.+|+++||||||+|||+.
T Consensus 108 ~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~ 176 (224)
T cd03220 108 NGRLLGL---SRKEIDEKIDEIIEFSELGDFIDLP--------VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176 (224)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 7543221 1122334567889999998888887 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
++..+.+.|+++++ .|.|||++||++ .++..+||++++|++|+++..|
T Consensus 177 ~~~~~~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 177 FQEKCQRRLRELLK-QGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999854 489999999997 5788899999999999998754
No 242
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1e-43 Score=308.71 Aligned_cols=179 Identities=26% Similarity=0.335 Sum_probs=157.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+++.++|++|++.+++.+||+||
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 93 (201)
T cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLEN 93 (201)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHH
Confidence 5899999999999999999999999999999999984 8999999998743 356789999999988889999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+..... ..+++.++++.+++.+..++. +.+||||||||++|||||+.+|+++||||||+||
T Consensus 94 l~~~~~~~---------~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 94 LRFWHADH---------SDEQVEEALARVGLNGFEDRP--------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHhhcccc---------cHHHHHHHHHHcCChhhhcCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 98753111 123467899999998877777 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
|+.++..+.+.|++++ +.|.|+|++||++ .++...+++++++
T Consensus 157 D~~~~~~l~~~l~~~~-~~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHC-ARGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEecCc-hhhhhccceeEec
Confidence 9999999999999984 4589999999997 4788899999887
No 243
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.9e-44 Score=316.18 Aligned_cols=190 Identities=25% Similarity=0.402 Sum_probs=156.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|++|++.+++ .||+|
T Consensus 31 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~ 106 (226)
T cd03248 31 QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQD 106 (226)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHH
Confidence 5899999999999999999999999999999999984 8999999988743 24567999999988776 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.++.................+.++++.+ |+....++. +.+|||||||||+|||+|+.+|++|||||||
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~--------~~~LSgG~~qrv~laral~~~p~llllDEPt 178 (226)
T cd03248 107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK--------GSQLSGGQKQRVAIARALIRNPQVLILDEAT 178 (226)
T ss_pred HhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC--------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 998754321111111111122356778888 777777776 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
+|||+.++..+.+.|+++ .+ +.|||++||++. ++ ..||++++|++|++
T Consensus 179 ~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~~-~~-~~~d~i~~l~~g~i 226 (226)
T cd03248 179 SALDAESEQQVQQALYDW-PE-RRTVLVIAHRLS-TV-ERADQILVLDGGRI 226 (226)
T ss_pred ccCCHHHHHHHHHHHHHH-cC-CCEEEEEECCHH-HH-HhCCEEEEecCCcC
Confidence 999999999999999998 44 589999999974 56 46999999999874
No 244
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.1e-43 Score=305.67 Aligned_cols=173 Identities=29% Similarity=0.411 Sum_probs=146.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCC-CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDL-FSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~-~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++. .+...|
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 5899999999999999999999999999999999984 8999999998741 24567999999863 233579
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.+....... ......+++.++++.+++.+..++. +.+||||||||++|||||+.+|+++|||||
T Consensus 86 v~~nl~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 86 VDQDVAFGPLNLGL---SEAEVERRVREALTAVGASGLRERP--------THCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCchhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999986543211 1222334578899999998888887 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
|+|||+.++..+.++|++++ ++|.|||++||++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~-~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLR-AEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHH-HcCCEEEEEeeccc
Confidence 99999999999999999995 45899999999973
No 245
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-43 Score=309.79 Aligned_cols=184 Identities=26% Similarity=0.309 Sum_probs=159.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.++|++|++.+++.+|++||+.
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 104 (214)
T PRK13543 28 GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLH 104 (214)
T ss_pred ecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHH
Confidence 4799999999999999999999999999999999984 7999999998754 23457999999988899899999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+....+.. . ..+.+.++++.+++.+..++. +..||||||||++|||+++.+|+++||||||++||+
T Consensus 105 ~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 170 (214)
T PRK13543 105 FLCGLHGR---R---AKQMPGSALAIVGLAGYEDTL--------VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170 (214)
T ss_pred HHHHhcCC---c---HHHHHHHHHHHcCChhhccCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 86543211 1 123456789999998888887 455999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
.++..+.+.|++++ ++|.|||++||++ .++.++||++++++.
T Consensus 171 ~~~~~l~~~l~~~~-~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 171 EGITLVNRMISAHL-RGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHHHHH-hCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999984 4589999999997 578999999999864
No 246
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=5.7e-43 Score=312.76 Aligned_cols=203 Identities=22% Similarity=0.243 Sum_probs=162.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++|++++|+||||||||||+++|+|+. +| ++|+|.++|+++.. . .+..++|++|++.+++.+|
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 94 (248)
T PRK09580 18 RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVS 94 (248)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCccccCCHHHHhhcceEEEecCchhccchh
Confidence 5899999999999999999999999999999995 46 48999999988743 1 2356999999988888888
Q ss_pred HHHHHHHHHHh-cC--c-hhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 77 VYEHLYFMALL-KL--D-RRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 77 v~e~l~~~~~~-~~--~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
+.+++.+.... .. . .........+.+.++++.+++. +..++.+. ..|||||||||+|||||+.+|++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------~~LS~G~~qrv~laral~~~p~il 167 (248)
T PRK09580 95 NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN-------VGFSGGEKKRNDILQMAVLEPELC 167 (248)
T ss_pred HHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC-------CCCCHHHHHHHHHHHHHHcCCCEE
Confidence 77766543211 00 0 0011112234567888999985 34555421 259999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~ 218 (290)
||||||++||+.++..+.+.|++++ +.|.|||++||++ ..+... +|++++|++|++++.|+++.+
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 168 ILDESDSGLDIDALKIVADGVNSLR-DGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999994 4589999999997 466666 899999999999999998854
No 247
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.7e-43 Score=346.13 Aligned_cols=201 Identities=22% Similarity=0.396 Sum_probs=168.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~l 75 (290)
.|+||++.+||+++|+|||||||||||++|+|+++|. .+|+|.++|+++.. .+++.+||+||+. .+++.+
T Consensus 277 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 354 (500)
T TIGR02633 277 DDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPIL 354 (500)
T ss_pred ccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCC
Confidence 4799999999999999999999999999999999851 37999999998742 2456799999985 588999
Q ss_pred CHHHHHHHHHH--hcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 76 TVYEHLYFMAL--LKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 76 Tv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||++|+.++.. .............+.+.++++.+++.+ ..+++ +..|||||||||+|||||+.+|++||
T Consensus 355 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGqkqrv~la~al~~~p~lll 426 (500)
T TIGR02633 355 GVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP--------IGRLSGGNQQKAVLAKMLLTNPRVLI 426 (500)
T ss_pred CHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc--------cccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 99999987532 110001111223355788999999964 56777 45599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
|||||+|||+.++..++++|+++++ .|.|||++|||+ .++.++||++++|++|+++..++.+
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999954 589999999997 5788999999999999999877554
No 248
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-43 Score=316.13 Aligned_cols=202 Identities=22% Similarity=0.326 Sum_probs=166.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecC---c-----cccccEEEEccCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVE---G-----KFRSACGFMYQHDLFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~---~-----~~~~~ig~v~Q~~~~~~ 73 (290)
.|+||++++||+++|+||||||||||+++|+|+.+|.. .++|+|.++|.++. . .+++.++|++|++.+++
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 112 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFP 112 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCc
Confidence 58999999999999999999999999999999987521 14899999998753 1 24667999999988888
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
. ||+||+.++....... ......+.+.++++.+++. +..++. +..|||||||||+|||||+.+|+
T Consensus 113 ~-tv~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ 181 (265)
T PRK14252 113 K-SIFENVAYGLRIRGVK--RRSILEERVENALRNAALWDEVKDRLGDL--------AFNLSGGQQQRLCIARALATDPE 181 (265)
T ss_pred c-hHHHHHHhHHHHcCCC--hHHHHHHHHHHHHHHcCCchhhhHHHhCC--------cccCCHHHHHHHHHHHHHHcCCC
Confidence 5 9999998865432111 1111234466778888764 234455 45699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
++||||||+|||+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|+.+++.
T Consensus 182 llllDEPt~gLD~~~~~~l~~~l~~l~-~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 182 ILLFDEPTSALDPIATASIEELISDLK-N-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHH-h-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999994 4 58999999997 5788899999999999999999988653
No 249
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.4e-43 Score=358.64 Aligned_cols=192 Identities=29% Similarity=0.375 Sum_probs=164.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.+||+||||||||||+|+|+|+++|. +|+|.+||+++.. .+|+.||||+|++.+|+. |++|
T Consensus 470 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~e 545 (686)
T TIGR03797 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFE 545 (686)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999865 478899999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.. . + .+++.++++..++. +..++.+++. ...||||||||++|||||+++|++||
T Consensus 546 Ni~~~~~-~-----~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~----G~~LSGGQrQRialARAll~~p~iLi 611 (686)
T TIGR03797 546 NIAGGAP-L-----T----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG----GGTLSGGQRQRLLIARALVRKPRILL 611 (686)
T ss_pred HHhcCCC-C-----C----HHHHHHHHHHcCcHHHHHhccccccccccCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998632 1 1 12234455555543 3457777775 34699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+||+.+..++.+.|+++ ++|+|++||++ ...+.||+|++|++|+++..|+.++++
T Consensus 612 LDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 612 FDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred EeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999876 47999999997 346779999999999999999999765
No 250
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.6e-43 Score=321.48 Aligned_cols=194 Identities=23% Similarity=0.337 Sum_probs=162.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||.|++||+++|+||||||||||+++|+|++++ +|+|+++|.++.. .+++.++|+||++.+|+. ||++
T Consensus 21 ~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~----~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~ 95 (275)
T cd03289 21 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT----EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRK 95 (275)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCC----CcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHH
Confidence 589999999999999999999999999999999873 6999999998853 357789999999998874 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCccc-------CCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI-------GSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v-------~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.+... .. .+.+.++++.+||.+..++.+ ++. ...||||||||++|||||+.+|++||
T Consensus 96 nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~----g~~LS~G~~qrl~LaRall~~p~ill 161 (275)
T cd03289 96 NLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG----GCVLSHGHKQLMCLARSVLSKAKILL 161 (275)
T ss_pred HhhhccC------CC----HHHHHHHHHHcCCHHHHHhCcccccceecCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9964211 11 123456777888876555542 221 23499999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.+...+.+.|+++ .. ++|||++||++ ..+. .||||++|++|++++.|++++++.
T Consensus 162 lDEpts~LD~~~~~~l~~~l~~~-~~-~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 162 LDEPSAHLDPITYQVIRKTLKQA-FA-DCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EECccccCCHHHHHHHHHHHHHh-cC-CCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 99999999999999999999987 43 79999999997 4554 599999999999999999998753
No 251
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.3e-43 Score=351.66 Aligned_cols=203 Identities=29% Similarity=0.434 Sum_probs=169.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.+||+||||||||||+++|+|+++|. +|+|.+||.++.. .+|+.|+||||++.+|. -||+|
T Consensus 346 ~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~ 421 (567)
T COG1132 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRE 421 (567)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHH
Confidence 4799999999999999999999999999999999994 8999999999975 47899999999999888 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.++..-....++.+..+...+.+.+.. +++..|+.+|+. ...||||||||++|||||+.+|++|+||||||+
T Consensus 422 NI~~g~~~at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge~----G~~LSgGQrQrlaiARall~~~~ILILDEaTSa 495 (567)
T COG1132 422 NIALGRPDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGER----GVNLSGGQRQRLAIARALLRNPPILILDEATSA 495 (567)
T ss_pred HHhcCCCCCCHHHHHHHHHHhChHHHHHh--CcccccceecCC----CccCCHHHHHHHHHHHHHhcCCCEEEEeccccc
Confidence 99997532211122222222223344443 356788999875 345999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+.+...+.+.++++ . +++|+|+++|+++ .+ ..||+|++|++|++++.|++++++.
T Consensus 496 lD~~tE~~I~~~l~~l-~-~~rT~iiIaHRls-ti-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 496 LDTETEALIQDALKKL-L-KGRTTLIIAHRLS-TI-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred cCHHhHHHHHHHHHHH-h-cCCEEEEEeccHh-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999988 3 4689999999984 44 4599999999999999999998764
No 252
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-43 Score=321.57 Aligned_cols=204 Identities=25% Similarity=0.378 Sum_probs=165.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.++||++.+||+++|+|||||||||||++|+|+++|. ...+|+|.++|.++.. .+++.++|+||++.+++ .
T Consensus 62 ~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~ 140 (305)
T PRK14264 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-K 140 (305)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-c
Confidence 4799999999999999999999999999999998621 0148999999998742 24568999999988887 5
Q ss_pred CHHHHHHHHHHhcCc----------hhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHH
Q psy2520 76 TVYEHLYFMALLKLD----------RRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFA 141 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia 141 (290)
||+||+.++...... .........+.+.++++.+++.+ ..++. +.+|||||||||+||
T Consensus 141 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgGq~qrv~LA 212 (305)
T PRK14264 141 SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN--------ALGLSGGQQQRLCIA 212 (305)
T ss_pred cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc--------cccCCHHHHHHHHHH
Confidence 999999986532110 00011122345778888888743 34555 556999999999999
Q ss_pred HHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE-EEEeCCeEEEEcCHHHHH
Q psy2520 142 TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI-ILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 142 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v-~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++||++ ..+..+||++ ++|++|+++..|+++++.
T Consensus 213 raL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~-~-~~tiiivtH~~-~~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 213 RCLAVDPEVILMDEPASALDPIATSKIEDLIEELA-E-EYTVVVVTHNM-QQAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCH-HHHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999994 4 48999999997 5788899996 578999999999988654
No 253
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=313.74 Aligned_cols=192 Identities=22% Similarity=0.267 Sum_probs=165.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+ +++++|+..+.+.+|+.+|+.+
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G~I~~~g~---------~~~~~~~~~~~~~~tv~enl~~ 108 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VGKVDRNGE---------VSVIAISAGLSGQLTGIENIEF 108 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCE---------EeEEecccCCCCCCcHHHHHHH
Confidence 4799999999999999999999999999999999984 799999985 4567787777788999999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....... ........+..+++.+++.+..++. +..|||||+|||+||+||+.+|++|||||||+|||+.
T Consensus 109 ~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 109 KMLCMGF---KRKEIKAMTPKIIEFSELGEFIYQP--------VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT 177 (264)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHcCCchhhcCC--------cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 6443221 1222334567788888998888877 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
++..+++.|.++ ++.|.|||++||++ .++..+||++++|++|+++..|+++++.+
T Consensus 178 ~~~~l~~~L~~~-~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 178 FAQKCLDKIYEF-KEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHHHHHHH-HHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999 45689999999997 57888999999999999999999987654
No 254
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.2e-43 Score=315.06 Aligned_cols=186 Identities=27% Similarity=0.373 Sum_probs=158.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCC--CHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL--TVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~l--Tv~e~l 81 (290)
.++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|. ..++|+||++.+++.+ |+.+++
T Consensus 21 ~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~-------~~i~~v~q~~~~~~~l~~~~~~~~ 90 (251)
T PRK09544 21 SDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK-------LRIGYVPQKLYLDTTLPLTVNRFL 90 (251)
T ss_pred EeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc-------cCEEEeccccccccccChhHHHHH
Confidence 4799999999999999999999999999999999984 899999872 3699999998777653 777776
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+.. ... .+.+.++++.+++.+..++. +..|||||||||+|||||+.+|++|||||||+|||
T Consensus 91 ~~~~------~~~----~~~~~~~l~~~gl~~~~~~~--------~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 152 (251)
T PRK09544 91 RLRP------GTK----KEDILPALKRVQAGHLIDAP--------MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152 (251)
T ss_pred hccc------ccc----HHHHHHHHHHcCChHHHhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 4321 011 13456789999998888887 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+++.|++++++.|.|||++||++ .++.++||++++|+ ++++..|+++++.
T Consensus 153 ~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 153 VNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 99999999999998544489999999997 57889999999996 4799999988654
No 255
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.4e-43 Score=380.21 Aligned_cols=203 Identities=26% Similarity=0.338 Sum_probs=180.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||.+++||++||+||||||||||+|+|+|+++|+ +|+|+++|+++.. ..++.|||+||++.+++.+||+|+
T Consensus 1956 ~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~ 2032 (2272)
T TIGR01257 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREH 2032 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHH
Confidence 4799999999999999999999999999999999995 8999999999853 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+.+.++.. ...+..+.++++++.++|.+..+++ ++.|||||||||+||+||+.+|+||||||||+||
T Consensus 2033 L~l~a~l~g~---~~~~~~~~v~~lLe~lgL~~~~dk~--------~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGL 2101 (2272)
T TIGR01257 2033 LYLYARLRGV---PAEEIEKVANWSIQSLGLSLYADRL--------AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM 2101 (2272)
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHcCCHHHhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 9987765432 1223345678899999999988988 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 222 (290)
||.+++.++++|+++++ +|+|||++||++ +++..+|||+++|.+|+++..|+++++...+
T Consensus 2102 Dp~sr~~l~~lL~~l~~-~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2102 DPQARRMLWNTIVSIIR-EGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 99999999999999954 589999999997 5899999999999999999999999886544
No 256
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=291.67 Aligned_cols=198 Identities=26% Similarity=0.398 Sum_probs=175.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----------cccccEEEEccCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----------KFRSACGFMYQHDLFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----------~~~~~ig~v~Q~~~~~~ 73 (290)
.||+++.++||.+.++||||||||||++.|.-+..|. +|+..|-|....- .+|+++|+|||+-.++|
T Consensus 19 fdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwp 95 (242)
T COG4161 19 FDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWP 95 (242)
T ss_pred eeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCc
Confidence 5899999999999999999999999999999888884 8999998876531 37889999999999999
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
.+||.||+.-+...-. ..++.+...++.++++++.|.+++|+. +-.|||||+|||+|||||+++|.+|++
T Consensus 96 hltv~enlieap~kv~--gl~~~qa~~~a~ellkrlrl~~~adr~--------plhlsggqqqrvaiaralmmkpqvllf 165 (242)
T COG4161 96 HLTVQENLIEAPCRVL--GLSKDQALARAEKLLKRLRLKPYADRY--------PLHLSGGQQQRVAIARALMMEPQVLLF 165 (242)
T ss_pred hhHHHHHHHhhhHHHh--CCCHHHHHHHHHHHHHHhccccccccC--------ceecccchhhhHHHHHHHhcCCcEEee
Confidence 9999999976542211 234455667788999999999999998 667999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
||||++|||.-..++.++++++ ++.|.|-+++||.. +.+.+.+.+|+.|.+|+|+..|+..
T Consensus 166 deptaaldpeitaqvv~iikel-~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 166 DEPTAALDPEITAQIVSIIKEL-AETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred cCcccccCHHHHHHHHHHHHHH-HhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999 67799999999997 4778899999999999999999876
No 257
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=340.54 Aligned_cols=195 Identities=33% Similarity=0.457 Sum_probs=168.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||++++|+.++|+|+||||||||+++|+|+.+| ++|+|.+||.++.+ .|+++++||+|+|.+|+. |++|
T Consensus 338 ~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~---~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-Tire 413 (559)
T COG4988 338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP---TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRE 413 (559)
T ss_pred CCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC---CCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHH
Confidence 579999999999999999999999999999999999 48999999998865 489999999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC------ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
|+.++..-. + .+.+.++++..++.+ -.|+.+|+. ...|||||+|||++||||+.+++++|+
T Consensus 414 Ni~l~~~~~-----s----~e~i~~al~~a~l~~~v~~p~GLdt~ige~----G~~LSgGQ~QRlaLARAll~~~~l~ll 480 (559)
T COG4988 414 NILLARPDA-----S----DEEIIAALDQAGLLEFVPKPDGLDTVIGEG----GAGLSGGQAQRLALARALLSPASLLLL 480 (559)
T ss_pred HhhccCCcC-----C----HHHHHHHHHHhcHHHhhcCCCcccchhccC----CCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 999864211 1 133456666666644 456677775 456999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++||..+...|++.|.+++ + ++|+|++||++ ....-+|+|++|++|+++..|.++++.
T Consensus 481 DEpTA~LD~etE~~i~~~l~~l~-~-~ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 481 DEPTAHLDAETEQIILQALQELA-K-QKTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred cCCccCCCHhHHHHHHHHHHHHH-h-CCeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHh
Confidence 99999999999999999999994 3 58999999996 356789999999999999999999764
No 258
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-44 Score=305.37 Aligned_cols=204 Identities=26% Similarity=0.379 Sum_probs=183.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++|++|++|.+++|+|||||||||||.+++.+++.+ +|+|+++|.++.. .+.+.++.+-|+..+...+||+|
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~d 94 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRD 94 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHH
Confidence 5899999999999999999999999999999999885 8999999999865 47788999999998889999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
-+.|+..-+..... ..+....++++++.++|.+..++.+ .+||||||||.-||+.|+++.+.++||||.++
T Consensus 95 Lv~FGRfPYSqGRl-t~eD~~~I~~aieyl~L~~l~dryL--------d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNN 165 (252)
T COG4604 95 LVGFGRFPYSQGRL-TKEDRRIINEAIEYLHLEDLSDRYL--------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNN 165 (252)
T ss_pred HhhcCCCcccCCCC-chHHHHHHHHHHHHhcccchHHHhH--------HhcccchhhhhhhheeeeccCcEEEecCcccc
Confidence 99997533222222 2344567899999999999999994 45999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||.....++++.|++++++-|+||++|.||++ ++..++|.|+-|++|+++..|+++++++
T Consensus 166 LDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 166 LDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999998888999999999985 8899999999999999999999998874
No 259
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=350.56 Aligned_cols=196 Identities=27% Similarity=0.379 Sum_probs=165.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+|+++++||.++|+||||||||||+++|+|+++|+ +|+|.+||.++.. .+++.|+|+||++.+|+ -|++|
T Consensus 360 ~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~ 435 (582)
T PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIAN 435 (582)
T ss_pred cCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHH
Confidence 5899999999999999999999999999999999994 7999999999864 46788999999998887 49999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++..- ..+ .+++.++++..+ +.+..++.+|+. ...||||||||++|||||+++|++||
T Consensus 436 Ni~~~~~~----~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~----g~~LSGGqrQRi~LARall~~~~ili 503 (582)
T PRK11176 436 NIAYARTE----QYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN----GVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_pred HHhcCCCC----CCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC----CCcCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99875311 011 122344444444 344567778775 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+++.|+++ .+ ++|+|+|||++ ...+.||+|++|++|+++..|+.++++
T Consensus 504 lDEptsaLD~~t~~~i~~~l~~~-~~-~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 504 LDEATSALDTESERAIQAALDEL-QK-NRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHH-hC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999998 43 68999999997 356789999999999999999998765
No 260
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-43 Score=297.87 Aligned_cols=154 Identities=34% Similarity=0.575 Sum_probs=140.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|+||++.+++.+|+.||
T Consensus 17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (173)
T cd03230 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVREN 93 (173)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHH
Confidence 4799999999999999999999999999999999884 8999999998753 356789999999988888999988
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+. ||||||||++|||||+.+|+++||||||++|
T Consensus 94 ~~-----------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 94 LK-----------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred hh-----------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 63 6999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
|+.++..+.+.|++++++ |.|+|++||++ .++..+||++++|++|++
T Consensus 127 D~~~~~~l~~~l~~~~~~-g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 127 DPESRREFWELLRELKKE-GKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 999999999999999544 89999999997 478889999999999974
No 261
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-43 Score=335.75 Aligned_cols=198 Identities=27% Similarity=0.372 Sum_probs=176.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.||||++.+||++||+|.||||||||+|+|+|.++|+ +|+|+++|++... .....|+.|+|+..++|+|||.
T Consensus 25 ~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVa 101 (500)
T COG1129 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVA 101 (500)
T ss_pred ccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHH
Confidence 5899999999999999999999999999999999995 8999999999853 2456799999999999999999
Q ss_pred HHHHHHHHhcC-chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.++..... ...+......+++.++|+.+++....+.+++ +||.||||.|+|||||..+++||||||||
T Consensus 102 eNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~--------~LsiaqrQ~VeIArAl~~~arllIlDEPT 173 (500)
T COG1129 102 ENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG--------DLSIAQRQMVEIARALSFDARVLILDEPT 173 (500)
T ss_pred HHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh--------hCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99998765433 2334455556778899999999655777754 49999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
|+|+......++++++++ +++|.+||++||.+ ++++++|||+.+|.+|+++...+
T Consensus 174 aaLt~~E~~~Lf~~ir~L-k~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 174 AALTVKETERLFDLIRRL-KAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred ccCCHHHHHHHHHHHHHH-HhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999 56799999999997 58999999999999999998777
No 262
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.6e-43 Score=309.80 Aligned_cols=185 Identities=26% Similarity=0.323 Sum_probs=153.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+.+|+ +|+|.++|.++.. .+++.++|+||++.+++ .||+|
T Consensus 21 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~e 96 (221)
T cd03244 21 KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRS 96 (221)
T ss_pred cceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHH
Confidence 4899999999999999999999999999999999984 8999999998753 35678999999988776 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCcc-----------CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-----------HTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
|+.+... . .. +.+.++++.+++.+.. ++. +..||+|||||++|||||+.+|
T Consensus 97 nl~~~~~--~----~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~--------~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 97 NLDPFGE--Y----SD----EELWQALERVGLKEFVESLPGGLDTVVEEG--------GENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred HhCcCCC--C----CH----HHHHHHHHHhCcHHHHHhcccccccccccC--------CCcCCHHHHHHHHHHHHHhcCC
Confidence 9875321 1 11 1233445555554332 333 5669999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
+++||||||+|||+.++..+.+.|+++ ++ +.|||++||++ .++. .||++++|++|+++..|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREA-FK-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHh-cC-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecCC
Confidence 999999999999999999999999998 44 68999999997 4564 599999999999998775
No 263
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.4e-43 Score=308.08 Aligned_cols=186 Identities=26% Similarity=0.348 Sum_probs=154.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEEC--CE--ecCc-------cc-cccEEEEccCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVN--GK--PVEG-------KF-RSACGFMYQHDLF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~--G~--~~~~-------~~-~~~ig~v~Q~~~~ 71 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++ |. ++.. .+ ++.++|+||++.+
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 5799999999999999999999999999999999984 7999998 43 4321 11 3579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
++.+||.||+.+....... ......+.+.++++.+++.+. .++. +.+||||||||++|||||+.+|++
T Consensus 102 ~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 102 IPRVSALEVVAEPLLERGV---PREAARARARELLARLNIPERLWHLP--------PATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred CCCccHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchhhhhCC--------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999875433211 112233456789999999764 4666 456999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
+||||||+|||+.++..+.+.|++++ ++|.|||++||++ ..+..+||+++.+.
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAK-ARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999999999999999999994 4589999999996 46778999998763
No 264
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.6e-43 Score=300.08 Aligned_cols=158 Identities=30% Similarity=0.522 Sum_probs=142.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~l 75 (290)
.++||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.++|+||++ .+++.+
T Consensus 17 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 17 RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 4899999999999999999999999999999999984 8999999998753 2456899999984 578889
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|++||+.+... ||||||||++|||||+.+|++|||||
T Consensus 94 t~~e~l~~~~~-------------------------------------------LS~G~~qrl~la~al~~~p~llllDE 130 (182)
T cd03215 94 SVAENIALSSL-------------------------------------------LSGGNQQKVVLARWLARDPRVLILDE 130 (182)
T ss_pred cHHHHHHHHhh-------------------------------------------cCHHHHHHHHHHHHHccCCCEEEECC
Confidence 99999876320 79999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
||+|||+.++..+.+.|++++ +.|.|+|++||++ .++.++||++++|++|++
T Consensus 131 P~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 131 PTRGVDVGAKAEIYRLIRELA-DAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 999999999999999999994 4589999999997 578899999999999974
No 265
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5e-43 Score=349.12 Aligned_cols=194 Identities=23% Similarity=0.342 Sum_probs=166.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++.. .+++.|+||+|++.+|+. |+++
T Consensus 358 ~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~ 433 (592)
T PRK10790 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLA 433 (592)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHH
Confidence 4899999999999999999999999999999999995 7999999999864 478999999999999986 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++. .. + .+++.++++.+|+. +..|+.+++. ...||||||||++|||||+.+|++||
T Consensus 434 NI~~~~-~~-----~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~----g~~LSGGqrQRialARaLl~~~~ill 499 (592)
T PRK10790 434 NVTLGR-DI-----S----EEQVWQALETVQLAELARSLPDGLYTPLGEQ----GNNLSVGQKQLLALARVLVQTPQILI 499 (592)
T ss_pred HHHhCC-CC-----C----HHHHHHHHHHcCcHHHHHhccccccccccCC----CCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999863 11 1 12245556665543 4457777764 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+.+.|+++ .. ++|+|++||++ .....||+|++|++|+++..|++++++
T Consensus 500 lDEpts~LD~~t~~~i~~~l~~~-~~-~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 500 LDEATANIDSGTEQAIQQALAAV-RE-HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred EeCCcccCCHHHHHHHHHHHHHH-hC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999998 33 68999999997 356779999999999999999999775
No 266
>KOG0058|consensus
Probab=100.00 E-value=1.8e-43 Score=345.60 Aligned_cols=203 Identities=26% Similarity=0.423 Sum_probs=174.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||+++|||++||+||||+||||+.++|-.++.|+ +|+|.+||.|+.+ .+|++||+|.|+|.+|.. ||+|
T Consensus 485 k~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~e 560 (716)
T KOG0058|consen 485 KNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRE 560 (716)
T ss_pred cCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHH
Confidence 5899999999999999999999999999999999994 8999999999975 478999999999999875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||.|+........+....+.+.+.+.+. ++++.+++.+|+.+. +||||||||+||||||++||.||||||.||+
T Consensus 561 NI~YG~~~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~----qLSGGQKQRIAIARALlr~P~VLILDEATSA 634 (716)
T KOG0058|consen 561 NIAYGLDNATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS----QLSGGQKQRIAIARALLRNPRVLILDEATSA 634 (716)
T ss_pred HHhcCCCCCCHHHHHHHHHHhChHHHHH--hCccccccccCCccc----cccchHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 9999876322222222223333444443 567889999999644 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||..+...+.+.|.++.+ ++|||++.|.++ ..+.+|+|+++++|+++..|+.++++.
T Consensus 635 LDaeSE~lVq~aL~~~~~--~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 635 LDAESEYLVQEALDRLMQ--GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred cchhhHHHHHHHHHHhhc--CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999998843 599999999973 578899999999999999999998763
No 267
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.1e-43 Score=343.46 Aligned_cols=192 Identities=25% Similarity=0.298 Sum_probs=164.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCC--C-C---
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLF--S-P--- 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~--~-~--- 73 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. .+++.++|++|++.+ + +
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 96 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGED 96 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhcccchh
Confidence 5899999999999999999999999999999999984 7999999987642 234569999998542 1 1
Q ss_pred --CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 74 --SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 74 --~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
.+||++++.+.. ...+++.++++.++|.+..+++ +.+|||||||||+||+||+.+|++|
T Consensus 97 ~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~ll 157 (490)
T PRK10938 97 DTGRTTAEIIQDEV-----------KDPARCEQLAQQFGITALLDRR--------FKYLSTGETRKTLLCQALMSEPDLL 157 (490)
T ss_pred hccccHHHhcccch-----------hHHHHHHHHHHHcCCHhhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 468888765320 1124567899999998888888 4559999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..++++|+++++ .|.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 158 lLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 158 ILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999954 589999999997 5788999999999999999999987654
No 268
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3e-43 Score=357.47 Aligned_cols=194 Identities=25% Similarity=0.333 Sum_probs=163.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.+||+||||||||||+++|+|+++|+ +|+|.+||.++.. .+|+.||||+|++.+|+ .|++|
T Consensus 496 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~e 571 (710)
T TIGR03796 496 ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRD 571 (710)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHH
Confidence 4899999999999999999999999999999999994 8999999999864 47899999999998886 49999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++..- .+. +++.++++..++ .+..++.+++. ...||||||||++|||||+++|++||
T Consensus 572 Ni~l~~~~-----~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~----G~~LSGGQrQRiaLARall~~p~ili 638 (710)
T TIGR03796 572 NLTLWDPT-----IPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG----GANLSGGQRQRLEIARALVRNPSILI 638 (710)
T ss_pred HhhCCCCC-----CCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC----CCCCCHHHHHHHHHHHHHhhCCCEEE
Confidence 99875211 111 223344444444 33457777775 34699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||||+||+.+..++++.|++ .++|+|++||++. ....||+|++|++|+++..|+.+++++
T Consensus 639 LDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 639 LDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999975 3789999999973 457799999999999999999997753
No 269
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=7.9e-43 Score=314.09 Aligned_cols=199 Identities=21% Similarity=0.268 Sum_probs=158.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+|+||||||||+++|+|+++|. +|+|+++|+++.. .+++.++|++|++.+++ .|++|
T Consensus 38 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~ 113 (257)
T cd03288 38 KHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRF 113 (257)
T ss_pred eEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHH
Confidence 4799999999999999999999999999999999884 8999999998753 35678999999988776 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+...... .............+.++++.+ ++....+.. +..||+|||||++|||||+.+|++|||||||
T Consensus 114 nl~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~llllDEPt 184 (257)
T cd03288 114 NLDPECKC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEG--------GENFSVGQRQLFCLARAFVRKSSILIMDEAT 184 (257)
T ss_pred hcCcCCCC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccC--------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 98542100 000000000111233444444 454444444 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+++.|+++ .+ +.|||++||++. .+. .||++++|++|+++..|+++++.
T Consensus 185 ~gLD~~~~~~l~~~l~~~-~~-~~tiii~sh~~~-~~~-~~dri~~l~~G~i~~~g~~~~~~ 242 (257)
T cd03288 185 ASIDMATENILQKVVMTA-FA-DRTVVTIAHRVS-TIL-DADLVLVLSRGILVECDTPENLL 242 (257)
T ss_pred cCCCHHHHHHHHHHHHHh-cC-CCEEEEEecChH-HHH-hCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999997 44 799999999974 555 59999999999999999988654
No 270
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1e-42 Score=376.43 Aligned_cols=200 Identities=28% Similarity=0.410 Sum_probs=179.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.+||+||++.+++.+||+||
T Consensus 947 ~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~ 1023 (2272)
T TIGR01257 947 DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEH 1023 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHH
Confidence 4799999999999999999999999999999999994 8999999999854 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.|.+..+... ..+..+++.++++.+||.+..++. +.+|||||||||+||+||+.+|++|||||||+||
T Consensus 1024 L~f~~~lkg~~---~~~~~~~v~~lL~~vgL~~~~~~~--------~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGL 1092 (2272)
T TIGR01257 1024 ILFYAQLKGRS---WEEAQLEMEAMLEDTGLHHKRNEE--------AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGV 1092 (2272)
T ss_pred HHHHHHhcCCC---HHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCC
Confidence 99987654321 223345678999999999988888 5559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..++++|+++ ++ |+|||++||++ +++..+|||+++|++|+++..|++..+.+
T Consensus 1093 Dp~sr~~l~~lL~~l-~~-g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1093 DPYSRRSIWDLLLKY-RS-GRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred CHHHHHHHHHHHHHH-hC-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999 44 89999999997 57888999999999999999999987764
No 271
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1e-42 Score=302.33 Aligned_cols=170 Identities=26% Similarity=0.323 Sum_probs=146.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+. +| .+|+|.++|+++.. . .+..++|+||++.+++.+|
T Consensus 17 ~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (200)
T cd03217 17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVK 93 (200)
T ss_pred eccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCcc
Confidence 4899999999999999999999999999999994 56 48999999998854 1 2345999999988888888
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+.+++. .. ...||||||||++|||||+.+|+++|||||
T Consensus 94 ~~~~l~----------------------------------~~--------~~~LS~G~~qrv~laral~~~p~illlDEP 131 (200)
T cd03217 94 NADFLR----------------------------------YV--------NEGFSGGEKKRNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred HHHHHh----------------------------------hc--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 877650 00 123999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh-hcCeEEEEeCCeEEEEcCHHHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSRTAFIGSKDAALAF 221 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 221 (290)
|++||+.++..+.+.|++++ +++.|||++||++ ..+.. +||++++|++|++++.|+.+ +...
T Consensus 132 t~~LD~~~~~~l~~~L~~~~-~~~~tiii~sh~~-~~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~ 194 (200)
T cd03217 132 DSGLDIDALRLVAEVINKLR-EEGKSVLIITHYQ-RLLDYIKPDRVHVLYDGRIVKSGDKE-LALE 194 (200)
T ss_pred CccCCHHHHHHHHHHHHHHH-HCCCEEEEEecCH-HHHHHhhCCEEEEEECCEEEEEccHH-HHhh
Confidence 99999999999999999994 4589999999997 46666 79999999999999999544 4433
No 272
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=8.2e-43 Score=302.11 Aligned_cols=178 Identities=28% Similarity=0.349 Sum_probs=152.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|++|++.+++.+||.||
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALEN 93 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHH
Confidence 4799999999999999999999999999999999984 8999999998753 245789999999888888999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+...... .. .+.+.++++.+++.+..++. +..|||||||||+|||||+.+|+++||||||+||
T Consensus 94 l~~~~~~~~----~~---~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 158 (198)
T TIGR01189 94 LHFWAAIHG----GA---QRTIEDALAAVGLTGFEDLP--------AAQLSAGQQRRLALARLWLSRAPLWILDEPTTAL 158 (198)
T ss_pred HHHHHHHcC----Cc---HHHHHHHHHHcCCHHHhcCC--------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 988654321 11 23467889999998888887 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
|+.++..+.+.|++++ +.|.|||++||++. .-.+++++.
T Consensus 159 D~~~~~~l~~~l~~~~-~~~~tii~~sH~~~---~~~~~~~~~ 197 (198)
T TIGR01189 159 DKAGVALLAGLLRAHL-ARGGIVLLTTHQDL---GLVEARELR 197 (198)
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEEcccc---cccceEEee
Confidence 9999999999999984 45899999999974 234677654
No 273
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1e-42 Score=303.38 Aligned_cols=179 Identities=26% Similarity=0.349 Sum_probs=149.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||.+.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|+||++.+++ .||+|
T Consensus 25 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~ 100 (207)
T cd03369 25 KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRS 100 (207)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHH
Confidence 4899999999999999999999999999999999984 8999999998743 24678999999988776 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.+... ... +.+.++++ .++. +..|||||+||++|||||+.+|+++||||||+|
T Consensus 101 ~l~~~~~------~~~----~~~~~~l~-------~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 155 (207)
T cd03369 101 NLDPFDE------YSD----EEIYGALR-------VSEG--------GLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155 (207)
T ss_pred HhcccCC------CCH----HHHHHHhh-------ccCC--------CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 9975321 111 11233333 2333 456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 215 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~ 215 (290)
||+.++..+++.|+++ .+ |.|+|++||++. ++. .||++++|++|+++..|++
T Consensus 156 LD~~~~~~l~~~l~~~-~~-~~tiii~th~~~-~~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 156 IDYATDALIQKTIREE-FT-NSTILTIAHRLR-TII-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCHHHHHHHHHHHHHh-cC-CCEEEEEeCCHH-HHh-hCCEEEEEECCEEEecCCC
Confidence 9999999999999998 44 899999999974 555 4999999999999887753
No 274
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.2e-43 Score=354.33 Aligned_cols=197 Identities=28% Similarity=0.412 Sum_probs=166.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.+||+||||||||||+++|+|+++|. +|+|.+||.++.. .+|+.++||+|++.+|+. |++|
T Consensus 482 ~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~e 557 (694)
T TIGR03375 482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRD 557 (694)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHH
Confidence 4899999999999999999999999999999999994 8999999999864 478899999999988875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++.... +. +++.++++..+ +.+..++.+++. ...||||||||++|||||+.+|+++|
T Consensus 558 Ni~~~~~~~-----~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~----G~~LSgGQrQRlalARall~~p~ili 624 (694)
T TIGR03375 558 NIALGAPYA-----DD----EEILRAAELAGVTEFVRRHPDGLDMQIGER----GRSLSGGQRQAVALARALLRDPPILL 624 (694)
T ss_pred HHhCCCCCC-----CH----HHHHHHHHHcChHHHHHhCcccccceecCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998753211 11 12233344433 344567777775 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 221 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 221 (290)
||||||+||+.+...+.+.|.++ .+ ++|+|++||+++ ..+.||+|++|++|+++..|+.+++++.
T Consensus 625 LDE~Ts~LD~~te~~i~~~l~~~-~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 625 LDEPTSAMDNRSEERFKDRLKRW-LA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHH-hC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999998 33 799999999973 5688999999999999999999987653
No 275
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-43 Score=297.84 Aligned_cols=156 Identities=32% Similarity=0.550 Sum_probs=140.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~lTv 77 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++.+++.+|+
T Consensus 17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (178)
T cd03229 17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTV 93 (178)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCH
Confidence 4789999999999999999999999999999999984 8999999998742 245789999999888888999
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
+||+.+. ||||||||++|||||+.+|+++||||||
T Consensus 94 ~~~l~~~---------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 94 LENIALG---------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred HHheeec---------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 8886531 6999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
+|||+.++..++++|++++++.|.|+|++||++ .++..+||++++|++|+
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 999999999999999999554479999999997 57778999999999884
No 276
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.3e-42 Score=343.04 Aligned_cols=203 Identities=31% Similarity=0.494 Sum_probs=163.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.++|+||||||||||+++|+|+++|. +|+|.++|.++.. .+++.++|++|++.+|+. |++|
T Consensus 335 ~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~ 410 (544)
T TIGR01842 335 RGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAE 410 (544)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999864 367899999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.++.............+...+.++++.+ .+..++.+++. ...||||||||++|||||+++|++|||||||++
T Consensus 411 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~----g~~LSgGq~qrl~lARall~~~~ililDEpts~ 484 (544)
T TIGR01842 411 NIARFGENADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG----GATLSGGQRQRIALARALYGDPKLVVLDEPNSN 484 (544)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC----cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 998543111101111111111233444443 23345555553 456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+.++..+.+.|+++ ...|+|+|++||++. ..+.||++++|++|+++..|+++++.
T Consensus 485 LD~~~~~~i~~~l~~~-~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 485 LDEEGEQALANAIKAL-KARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred cCHHHHHHHHHHHHHH-hhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999998 445799999999973 46789999999999999999988764
No 277
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2e-42 Score=301.90 Aligned_cols=181 Identities=26% Similarity=0.418 Sum_probs=154.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.. .+++.++|++|++.+++.+||.||+.
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~ 95 (207)
T PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLE 95 (207)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHH
Confidence 5899999999999999999999999999999999884 8999999988642 25677999999888888999999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+....... . .+.+.++++.+++.+..+++ +..||||||||++|||||+.+|+++||||||+|||+
T Consensus 96 ~~~~~~~~---~----~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 160 (207)
T PRK13539 96 FWAAFLGG---E----ELDIAAALEAVGLAPLAHLP--------FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160 (207)
T ss_pred HHHHhcCC---c----HHHHHHHHHHcCCHHHHcCC--------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 76543211 1 12367899999998777777 455999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
.++..+++.|+++++ +|.|||++||++ .++.. |+++.+..
T Consensus 161 ~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 161 AAVALFAELIRAHLA-QGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 999999999999844 589999999997 45554 88887743
No 278
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=327.44 Aligned_cols=199 Identities=29% Similarity=0.407 Sum_probs=178.0
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCH
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv 77 (290)
-.+|||++.+||+.||+|.||||||||+++|.|+++|+ +|+|+++|+++.- ..+..||+|+|+..+++++||
T Consensus 20 nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV 96 (501)
T COG3845 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTV 96 (501)
T ss_pred cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccch
Confidence 36899999999999999999999999999999999995 8999999999853 367789999999999999999
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
.||+.++............+..+++.++.+.+||.-..+.++++ ||-||||||.|.++|.++|++|||||||
T Consensus 97 ~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~d--------LsVG~qQRVEIlKaLyr~a~iLILDEPT 168 (501)
T COG3845 97 AENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD--------LSVGEQQRVEILKALYRGARLLILDEPT 168 (501)
T ss_pred hhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeec--------CCcchhHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999986532222334556667889999999999888988554 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
+-|-|....+++++|+++ ++.|+|||++||.+ .|+.++|||+.+|..|+++...+
T Consensus 169 aVLTP~E~~~lf~~l~~l-~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 169 AVLTPQEADELFEILRRL-AAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred ccCCHHHHHHHHHHHHHH-HHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999 45699999999998 58999999999999999876544
No 279
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=7.1e-43 Score=298.39 Aligned_cols=161 Identities=35% Similarity=0.527 Sum_probs=139.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||
T Consensus 16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q------------ 80 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELARKIAYVPQ------------ 80 (180)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHHHHHhHHHH------------
Confidence 4799999999999999999999999999999999984 8999999998753 23456777777
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
+++.+++.+..++. +..||||||||++|||||+.+|+++||||||++
T Consensus 81 -------------------------~l~~~gl~~~~~~~--------~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 81 -------------------------ALELLGLAHLADRP--------FNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred -------------------------HHHHcCCHhHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 45566666655665 455999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
||+.++..+.+.|++++++.|.|+|++||++ .++.++||++++|++|+++..|
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999543378999999997 4778999999999999987643
No 280
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.1e-42 Score=307.15 Aligned_cols=187 Identities=21% Similarity=0.249 Sum_probs=155.6
Q ss_pred cceEEEEe-----CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAAL-----SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~-----~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.++++++. +||+++|+||||||||||+++|+|+++|+ +|+|.++|+ .++|++|+...++.+||.
T Consensus 11 ~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~--------~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 11 GEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD--------TVSYKPQYIKADYEGTVR 79 (246)
T ss_pred CcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc--------eEEEecccccCCCCCCHH
Confidence 36777776 79999999999999999999999999984 799999985 499999998777789999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|++.+....... ....+.++++.+++.+..++. +..|||||||||+||+||+.+|+++||||||+
T Consensus 80 e~l~~~~~~~~~-------~~~~~~~~l~~l~l~~~~~~~--------~~~LSgGe~qrv~iaraL~~~p~llllDEPt~ 144 (246)
T cd03237 80 DLLSSITKDFYT-------HPYFKTEIAKPLQIEQILDRE--------VPELSGGELQRVAIAACLSKDADIYLLDEPSA 144 (246)
T ss_pred HHHHHHhhhccc-------cHHHHHHHHHHcCCHHHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 998764322110 012346788899998888887 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE--EEcCHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA--FIGSKDA 217 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~--~~g~~~~ 217 (290)
+||+.++..+.++|++++++.|+|||++||++ .++..+||++++|+++..+ ..+++.+
T Consensus 145 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 145 YLDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 99999999999999999655689999999997 5788899999999765433 3455544
No 281
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1e-42 Score=353.51 Aligned_cols=195 Identities=27% Similarity=0.378 Sum_probs=164.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.+||+||||||||||+++|+|+++|+ +|+|++||.++.. .+|+.||||+|++.+|+. |++|
T Consensus 491 ~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~e 566 (708)
T TIGR01193 491 SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILE 566 (708)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHH
Confidence 4899999999999999999999999999999999994 8999999999864 478899999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++.... .+. +++.++++..++ ....++.+++. ...||||||||++|||||+++|++||
T Consensus 567 Ni~l~~~~~----~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~----G~~LSgGQrQRialARall~~p~ili 634 (708)
T TIGR01193 567 NLLLGAKEN----VSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE----GSSISGGQKQRIALARALLTDSKVLI 634 (708)
T ss_pred HHhccCCCC----CCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC----CCCCCHHHHHHHHHHHHHhhCCCEEE
Confidence 999863111 111 122334444333 34567777774 35699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+++.|+++ +|+|+|++||+++ ..+.||+|++|++|+++..|+.++++
T Consensus 635 LDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~ 696 (708)
T TIGR01193 635 LDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELL 696 (708)
T ss_pred EeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999875 3689999999973 56789999999999999999999765
No 282
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-42 Score=300.87 Aligned_cols=177 Identities=23% Similarity=0.303 Sum_probs=151.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|+++|+++.. .+++.++|++|+..+++.+||.||
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 94 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN 94 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHH
Confidence 4799999999999999999999999999999999984 8999999998753 356789999999888889999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+..... . . ...+.++++.+++.+..++. +..|||||+||++|||||+.+|++|||||||+||
T Consensus 95 ~~~~~~~~--~--~----~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~~rv~laral~~~p~~lilDEP~~~L 158 (200)
T PRK13540 95 CLYDIHFS--P--G----AVGITELCRLFSLEHLIDYP--------CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158 (200)
T ss_pred HHHHHhcC--c--c----hHHHHHHHHHcCCchhhhCC--------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 98864221 1 1 13467899999998777777 4459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 202 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~ 202 (290)
|+.++..+.+.|++++ +.|.|||++||++. ..+.+|...
T Consensus 159 D~~~~~~l~~~l~~~~-~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 159 DELSLLTIITKIQEHR-AKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred CHHHHHHHHHHHHHHH-HcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999984 45899999999963 446677654
No 283
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-42 Score=318.80 Aligned_cols=202 Identities=26% Similarity=0.435 Sum_probs=183.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
++|||++++||.++|+|.||||||||-.+|.+++++ +|+|.|+|+++.. .+|+.+-.||||| .+-|.
T Consensus 304 d~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 304 DGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred ccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 589999999999999999999999999999999987 5999999999964 2678899999997 68899
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||.+-+.-+...+.+ ..+..++.+++.++|+.+||.. ..+++ +.++|||||||++||||++.+|++++|
T Consensus 380 mtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY--------PhEFSGGQRQRIAIARAliLkP~~i~L 450 (534)
T COG4172 380 MTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY--------PHEFSGGQRQRIAIARALILKPELILL 450 (534)
T ss_pred cCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC--------CcccCcchhhHHHHHHHHhcCCcEEEe
Confidence 9999999988876653 3467788889999999999964 56777 566999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+||..-+.+++++|+++.++.|.+-+++|||+ ..+..+||+|++|.+|+||+.|+.++++
T Consensus 451 DEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred cCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 9999999999999999999999888899999999997 5788899999999999999999999776
No 284
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-42 Score=345.27 Aligned_cols=195 Identities=31% Similarity=0.487 Sum_probs=167.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.++|+||||||||||+++|+|+++|+ +|+|++||.++.. .+|+.++||+|++.+|+. |++|
T Consensus 357 ~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ 432 (574)
T PRK11160 357 KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRD 432 (574)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHH
Confidence 5899999999999999999999999999999999994 8999999999864 478899999999988874 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc------cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS------QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
|+.++... .+ .+.+.++++.+++.++ .|+.+|+. ...||||||||++|||||+++|++|||
T Consensus 433 Ni~~~~~~-----~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~----g~~LSgGqrqRialARall~~~~ilil 499 (574)
T PRK11160 433 NLLLAAPN-----AS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG----GRQLSGGEQRRLGIARALLHDAPLLLL 499 (574)
T ss_pred HhhcCCCc-----cC----HHHHHHHHHHcCCHHHHcCccccCchhcCC----CCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99886321 11 2335667777777543 56667764 456999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++||+.+...+.+.|.++ . +++|+|++||++. . ...||++++|++|+++..|+.++++
T Consensus 500 DE~ts~lD~~t~~~i~~~l~~~-~-~~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 500 DEPTEGLDAETERQILELLAEH-A-QNKTVLMITHRLT-G-LEQFDRICVMDNGQIIEQGTHQELL 561 (574)
T ss_pred eCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEecChh-H-HHhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999998 4 3799999999974 4 4679999999999999999998765
No 285
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2e-42 Score=293.86 Aligned_cols=151 Identities=30% Similarity=0.496 Sum_probs=136.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||++++||+++|+|||||||||||++|+|+++|. +|+|.++|+++.. .+++.++|++|++.+++ .||+|
T Consensus 19 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 94 (173)
T cd03246 19 RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GSIAE 94 (173)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHHHhheEEECCCCcccc-CcHHH
Confidence 4799999999999999999999999999999999984 8999999998753 35678999999988777 48988
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+ ||||||||++|||||+.+|++|||||||++
T Consensus 95 ~l------------------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~ 126 (173)
T cd03246 95 NI------------------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH 126 (173)
T ss_pred HC------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 76 599999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
||+.++..+++.|++++ ++|+|||++||++ ..+ .+||++++|++|++
T Consensus 127 LD~~~~~~l~~~l~~~~-~~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 127 LDVEGERALNQAIAALK-AAGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 99999999999999994 4589999999997 455 68999999999974
No 286
>KOG0055|consensus
Probab=100.00 E-value=7.8e-43 Score=357.53 Aligned_cols=203 Identities=25% Similarity=0.414 Sum_probs=169.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||.+++|+.+||+|||||||||++++|.+++.|+ +|+|++||.++.. .+|.+||.|+|+|.+|. .|++|
T Consensus 370 ~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~e 445 (1228)
T KOG0055|consen 370 KGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRE 445 (1228)
T ss_pred CCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhc-ccHHH
Confidence 3799999999999999999999999999999999995 8999999999865 47889999999997765 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.|+..-.....+.+..+...+.+.+. .|.+..++.+|+.+. +|||||||||+|||||+.+|+|||||||||+
T Consensus 446 NI~~G~~dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~g~----qLSGGQKQRIAIARalv~~P~ILLLDEaTSa 519 (1228)
T KOG0055|consen 446 NIRYGKPDATREEIEEAAKAANAHDFIL--KLPDGYDTLVGERGV----QLSGGQKQRIAIARALVRNPKILLLDEATSA 519 (1228)
T ss_pred HHhcCCCcccHHHHHHHHHHccHHHHHH--hhHHhhcccccCCCC----CCChHHHHHHHHHHHHHhCCCEEEecCcccc
Confidence 9999753221112222222222233332 456778889998643 5999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+.+...+.+.|.+. . .|+|.|+|+|+++ .+ +.+|+|++|++|++++.|+++|++.
T Consensus 520 LD~~se~~Vq~ALd~~-~-~grTTivVaHRLS-tI-rnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 520 LDAESERVVQEALDKA-S-KGRTTIVVAHRLS-TI-RNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred cCHHHHHHHHHHHHHh-h-cCCeEEEEeeehh-hh-hccCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999998 4 4889999999974 45 5599999999999999999999874
No 287
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.9e-42 Score=343.42 Aligned_cols=195 Identities=26% Similarity=0.382 Sum_probs=163.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++.. .+++.|+||+|++.+|+. |++|
T Consensus 352 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~ 427 (588)
T PRK13657 352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIED 427 (588)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHH
Confidence 5899999999999999999999999999999999994 8999999999864 478899999999988864 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++..- ... +++.++++.+++ ++..++.+++. ...||||||||++|||||+.+|+++|
T Consensus 428 Ni~~~~~~-----~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~----g~~LSgGq~QRialARall~~~~ili 494 (588)
T PRK13657 428 NIRVGRPD-----ATD----EEMRAAAERAQAHDFIERKPDGYDTVVGER----GRQLSGGERQRLAIARALLKDPPILI 494 (588)
T ss_pred HHhcCCCC-----CCH----HHHHHHHHHhCHHHHHHhCcccccchhcCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99885211 111 112334444443 33456666664 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+++.|+++ . +++|+|++||++ ...+.||++++|++|+++..|+.++++
T Consensus 495 LDEpts~LD~~t~~~i~~~l~~~-~-~~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 495 LDEATSALDVETEAKVKAALDEL-M-KGRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred EeCCccCCCHHHHHHHHHHHHHH-h-cCCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999987 3 379999999997 356789999999999999999998764
No 288
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.7e-42 Score=351.86 Aligned_cols=194 Identities=26% Similarity=0.356 Sum_probs=161.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||+++|||.++|+||||||||||+++|+|+++|. +|+|.+||+++.+ .++++|+||+|++.+|+ .|++|
T Consensus 498 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIre 573 (711)
T TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRE 573 (711)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHH
Confidence 4899999999999999999999999999999999994 8999999999864 47889999999998886 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++.... + .+++.++++..++. +..|+.+++. ..+||||||||++|||||+++|+|||
T Consensus 574 NI~~g~~~~-----~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~----G~~LSGGQkQRlalARALl~~p~ILI 640 (711)
T TIGR00958 574 NIAYGLTDT-----P----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK----GSQLSGGQKQRIAIARALVRKPRVLI 640 (711)
T ss_pred HHhcCCCCC-----C----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC----CCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999863211 1 12234555555543 3467777764 34699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||||+||+.+...+.+ .. ...++|+|++||+++ ....||+|++|++|+++..|+++++++
T Consensus 641 LDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 641 LDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999988 22 224789999999973 467899999999999999999997653
No 289
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.8e-42 Score=294.07 Aligned_cols=157 Identities=33% Similarity=0.543 Sum_probs=140.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+|||||||||||++|+|+.+|. +|+|.++|+++.. .+++.++|++|++.+++ .|++||
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~ 94 (178)
T cd03247 19 KNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNN 94 (178)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHh
Confidence 4799999999999999999999999999999999984 8999999998743 35678999999987776 699888
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+ + ..||||||||++|||||+.+|++|||||||++|
T Consensus 95 i-------------------------------------~--------~~LS~G~~qrv~laral~~~p~~lllDEP~~~L 129 (178)
T cd03247 95 L-------------------------------------G--------RRFSGGERQRLALARILLQDAPIVLLDEPTVGL 129 (178)
T ss_pred h-------------------------------------c--------ccCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 6 1 129999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+.++..+++.|+++ .+ +.|||++||++. ++ ..||++++|++|++++.|
T Consensus 130 D~~~~~~l~~~l~~~-~~-~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 130 DPITERQLLSLIFEV-LK-DKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred CHHHHHHHHHHHHHH-cC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999998 44 799999999974 55 579999999999998654
No 290
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-43 Score=291.26 Aligned_cols=188 Identities=27% Similarity=0.386 Sum_probs=167.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
+|+||.+.+||..+|+||||||||||+|+++.+.+|+ +|.+++.|++++. .+|++|+|+.|.+.+|+. ||++
T Consensus 20 ~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeD 95 (223)
T COG4619 20 NNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVED 95 (223)
T ss_pred cceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhh
Confidence 5899999999999999999999999999999999994 8999999999865 489999999999999987 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.|....+.... ..+.+.++++.+++.+. .++. +.+||||||||++|+|.|..-|+|||||||||
T Consensus 96 NlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k~--------it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 96 NLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTKN--------ITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred ccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcch--------hhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 9999776653221 23456789999999764 5555 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
+||+.+++.|-++|.++.++++..++.+|||. ++..+.||+++-+..|++
T Consensus 163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999999999999999777899999999997 578899999999999875
No 291
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=328.38 Aligned_cols=192 Identities=20% Similarity=0.245 Sum_probs=163.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+. ++.+...+.+.+||+||+.+
T Consensus 41 ~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~---------~i~~~~~l~~~lTV~EnL~l 108 (549)
T PRK13545 41 NNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA---------LIAISSGLNGQLTGIENIEL 108 (549)
T ss_pred eeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee---------eEEeccccCCCCcHHHHHHh
Confidence 5799999999999999999999999999999999984 89999999752 12223456677899999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....... ...+..+.+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+|||+.
T Consensus 109 ~~~~~~~---~~~e~~e~i~elLe~lgL~~~ld~~--------~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 109 KGLMMGL---TKEKIKEIIPEIIEFADIGKFIYQP--------VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred hhhhcCC---CHHHHHHHHHHHHHHcCChhHhhCC--------cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 5433221 1222334567899999998888888 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
++..+++.|+++ +++|.|||++||++ .++..+||++++|++|+++..|+++++..
T Consensus 178 sr~~LlelL~el-~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 178 FTKKCLDKMNEF-KEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHHHHHHHHHH-HhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999998 45689999999997 57889999999999999999999987754
No 292
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.8e-42 Score=341.18 Aligned_cols=196 Identities=28% Similarity=0.394 Sum_probs=165.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.++|+|+||||||||+++|+|+++|. +|+|++||.++.. .+++.++|++|++.+|+. |++|
T Consensus 349 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~ 424 (571)
T TIGR02203 349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIAN 424 (571)
T ss_pred cCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHH
Confidence 4899999999999999999999999999999999995 7999999999864 467889999999988865 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++... ... .+++.++++.+++ .+..|+.+++.+ ..||||||||++||||++.+|+++|
T Consensus 425 Ni~~~~~~----~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g----~~LSgGqrQRiaLARall~~~~ill 492 (571)
T TIGR02203 425 NIAYGRTE----QAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENG----VLLSGGQRQRLAIARALLKDAPILI 492 (571)
T ss_pred HHhcCCCC----CCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCC----CcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99876310 111 1234455555554 344677777653 4599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+++.|+++ . .++|+|++||++ ...+.||+|++|++|+++..|+.++++
T Consensus 493 LDEpts~LD~~~~~~i~~~L~~~-~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 493 LDEATSALDNESERLVQAALERL-M-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred EeCccccCCHHHHHHHHHHHHHH-h-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999988 3 368999999997 467889999999999999999999764
No 293
>KOG0057|consensus
Probab=100.00 E-value=2e-42 Score=328.80 Aligned_cols=195 Identities=29% Similarity=0.458 Sum_probs=167.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||+|++||-+||+|+|||||||++|+|.+++.. +|+|++||+++.. .+|+.||||||+..+|++ ||.+
T Consensus 369 ~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~----sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~ 443 (591)
T KOG0057|consen 369 KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY----SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILY 443 (591)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc----CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHH
Confidence 479999999999999999999999999999999883 7999999999965 488999999999888876 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.|+...... +++.++.+..+ +++...+.+|+.+ ..|||||||||+||||++.+|+|++
T Consensus 444 NI~YGn~sas~---------eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG----~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 444 NIKYGNPSASD---------EEVVEACKRAGLHDVISRLPDGYQTLVGERG----LMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HhhcCCCCcCH---------HHHHHHHHHcCcHHHHHhccccchhhHhhcc----cccccchHHHHHHHHHHhcCCCeEE
Confidence 99998643221 12333444444 3456677788854 4599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|||||+||..+..++++.+.+. ..|+|+|++-|+. ....-||+|++|++|++...|+.++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999995 3589999999996 4678899999999999999999998875
No 294
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.8e-41 Score=297.43 Aligned_cols=192 Identities=19% Similarity=0.151 Sum_probs=156.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEE-ECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR-VNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~-i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.||||+|++|++++|+||||||||||+++|+|+++|+ +|+|. ++|..+ .+.+.+.+++.+|+.||+.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~---------~~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL---------PLGANSFILPGLTGEENAR 71 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee---------ccccccccCCcCcHHHHHH
Confidence 5899999999999999999999999999999999984 89997 777543 1234567889999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+....+... ..+.. ..+.+.+++....++. +..||+|||||++|||||+.+|+++||||||+++|+
T Consensus 72 ~~~~~~~~~---~~~~~---~~~~~~~~l~~~~~~~--------~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 72 MMASLYGLD---GDEFS---HFCYQLTQLEQCYTDR--------VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHcCCC---HHHHH---HHHHHHhChhHHhhch--------HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 876543211 11111 2334556777777777 455999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 224 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 224 (290)
.++..+.+.|.+..+ +.|+|++||++ .++..+||++++|++|++++.++.+++.+++..
T Consensus 138 ~~~~~~~~~l~~~~~--~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 138 ATQLRMQAALACQLQ--QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHHhh--CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999999998866423 36899999997 478889999999999999999999987665443
No 295
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.7e-42 Score=339.25 Aligned_cols=195 Identities=23% Similarity=0.381 Sum_probs=163.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.. .+++.++|++|++.+|+. |++|
T Consensus 332 ~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~ 407 (569)
T PRK10789 332 ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVAN 407 (569)
T ss_pred cCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999854 467889999999988875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... .. +.+.++++..++ .+..++.+++. ...||||||||++|||||+++|+++|
T Consensus 408 Ni~~~~~~~-----~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~----g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 408 NIALGRPDA-----TQ----QEIEHVARLASVHDDILRLPQGYDTEVGER----GVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred HHhcCCCCC-----CH----HHHHHHHHHcCCHHHHHhCcCcccceecCC----CCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998753111 11 122333444333 34456666664 35699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+.+.|+++ . +++|+|++||++. ..+.||++++|++|+++..|+.++++
T Consensus 475 lDEpts~LD~~~~~~i~~~l~~~-~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHNLRQW-G-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred EECccccCCHHHHHHHHHHHHHH-h-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999998 3 4799999999973 45679999999999999999998764
No 296
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8.5e-42 Score=346.04 Aligned_cols=195 Identities=27% Similarity=0.407 Sum_probs=163.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.++|+|+||||||||+++|+|+++|+ +|+|++||.++.. .+|+.++||+|++.+|+ .|++|
T Consensus 474 ~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~e 549 (694)
T TIGR01846 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIRD 549 (694)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHHH
Confidence 5899999999999999999999999999999999995 8999999999864 47889999999988886 49999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... +. +.+.++++..++ .+..++.+++. ..+||||||||++|||||+++|++||
T Consensus 550 Ni~~~~~~~-----~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~----g~~LSgGq~qri~lARall~~~~ili 616 (694)
T TIGR01846 550 NIALCNPGA-----PF----EHVIHAAKLAGAHDFISELPQGYNTEVGEK----GANLSGGQRQRIAIARALVGNPRILI 616 (694)
T ss_pred HHhcCCCCC-----CH----HHHHHHHHHcChHHHHHhCcCccCcEecCC----CCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 998753111 11 122333333333 33456677664 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+.+.|+++ . .++|+|++||++. . ...||++++|++|+++..|+.++++
T Consensus 617 lDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~-~-~~~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 617 FDEATSALDYESEALIMRNMREI-C-RGRTVIIIAHRLS-T-VRACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred EECCCcCCCHHHHHHHHHHHHHH-h-CCCEEEEEeCChH-H-HHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999998 3 4799999999973 4 4679999999999999999998765
No 297
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=332.60 Aligned_cols=200 Identities=18% Similarity=0.276 Sum_probs=163.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~l 75 (290)
.++||.+++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ..++.++|+||++ .+++.+
T Consensus 265 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 341 (491)
T PRK10982 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL 341 (491)
T ss_pred ceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence 5899999999999999999999999999999999984 8999999998753 1356699999984 478888
Q ss_pred CHHHHHHHHH-H-h-cCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMA-L-L-KLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~-~-~-~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|+.+|..+.. . . ............+.+.++++.+++. +..+++ +.+|||||||||+|||+|+.+|+||
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGq~qrv~la~al~~~p~il 413 (491)
T PRK10982 342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ--------IGSLSGGNQQKVIIGRWLLTQPEIL 413 (491)
T ss_pred cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc--------cccCCcHHHHHHHHHHHHhcCCCEE
Confidence 8887743321 0 0 0000001122234567889999995 456777 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
||||||+|||+.++..+++.|++++ +.|.|||++|||+ .++..+|||+++|++|+++..++++
T Consensus 414 lLDEPt~gLD~~~~~~~~~~l~~l~-~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 414 MLDEPTRGIDVGAKFEIYQLIAELA-KKDKGIIIISSEM-PELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred EEcCCCcccChhHHHHHHHHHHHHH-HCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999995 4589999999997 5788999999999999999877553
No 298
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=8.9e-42 Score=338.94 Aligned_cols=195 Identities=25% Similarity=0.354 Sum_probs=163.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||+++|||.++|+||||||||||+++|+|+++|. +|+|.+||.++.. .+++.++|+||++.+|+. |++|
T Consensus 357 ~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~ 432 (576)
T TIGR02204 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVME 432 (576)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHH
Confidence 4899999999999999999999999999999999994 7999999999864 467889999999988764 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... + .+++.++++.+++. +..++.+++. ...||||||||++||||++.+|++||
T Consensus 433 Ni~~~~~~~-----~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~----g~~LSgGq~Qrl~laRal~~~~~ili 499 (576)
T TIGR02204 433 NIRYGRPDA-----T----DEEVEAAARAAHAHEFISALPEGYDTYLGER----GVTLSGGQRQRIAIARAILKDAPILL 499 (576)
T ss_pred HHhcCCCCC-----C----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC----CCcCCHHHHHHHHHHHHHHhCCCeEE
Confidence 998753111 1 12234455555543 3345566654 34699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.++..+++.|+++ .+ ++|+|++||++ .....+|++++|++|+++..|+++++.
T Consensus 500 lDEpts~lD~~~~~~i~~~l~~~-~~-~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 500 LDEATSALDAESEQLVQQALETL-MK-GRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred EeCcccccCHHHHHHHHHHHHHH-hC-CCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 99999999999999999999998 43 79999999997 356789999999999999999988653
No 299
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-41 Score=296.04 Aligned_cols=180 Identities=27% Similarity=0.418 Sum_probs=139.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||+|++|++++|+||||||||||+++|+|+.+|+ +|+|.++| .|+|++|++.++ ..|++||+.+
T Consensus 22 ~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g---------~i~~~~q~~~l~-~~t~~enl~~ 88 (204)
T cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG---------SIAYVSQEPWIQ-NGTIRENILF 88 (204)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC---------EEEEEecCchhc-cCcHHHHhcc
Confidence 4899999999999999999999999999999999984 89999998 599999998887 4699999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
..... ........+...+.+.+..+ ++....++. +..||+|||||++|||||+.+|+++||||||++||
T Consensus 89 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 89 GKPFD-EERYEKVIKACALEPDLEILPDGDLTEIGEK--------GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CCCcC-HHHHHHHHHHcCcHHHHHhccCcccceecCC--------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 53211 00000000000111222222 222233333 45699999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 162 SFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 162 ~~~~~~i~~-~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
+.++..+++ +++.+ .+.|.|||++||++ ..+.. ||++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~-~~~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGL-LLNNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHh-ccCCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 999999998 46666 34489999999997 45655 99999999985
No 300
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-41 Score=297.61 Aligned_cols=180 Identities=24% Similarity=0.352 Sum_probs=145.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|+++.. ..++.++|++|++.++ ..
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 93 (218)
T cd03290 18 SNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NA 93 (218)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccchhhcceEEEEcCCCccc-cc
Confidence 4799999999999999999999999999999999884 8999999987642 1346799999998877 57
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-----------cCcccCCcCCCCCCCCChHHHHHHHHHHHH
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-----------QHTRIGSSSITQKVVLSGGERKRLSFATEL 144 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL 144 (290)
|++||+.+.... ... .+.++++.+++.+. .++. +..|||||||||+|||||
T Consensus 94 t~~~nl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~LS~G~~qrv~laral 155 (218)
T cd03290 94 TVEENITFGSPF------NKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGER--------GINLSGGQRQRICVARAL 155 (218)
T ss_pred cHHHHHhhcCcC------CHH----HHHHHHHHhCcHHHHHhCcCccccCcccC--------CCcCCHHHHHHHHHHHHH
Confidence 999999875311 111 11233444444322 2233 456999999999999999
Q ss_pred HhCCCeEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 145 LTDPALLLCDEPTTGLDSFSASKLIR--MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 145 ~~~p~llllDEPtsgLD~~~~~~i~~--~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
+.+|++|||||||++||+.++..+++ +++.+ ++.|.|+|++||++. .+ ..||++++|++|.
T Consensus 156 ~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 156 YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 99999999999999999999999998 67766 456899999999974 55 5799999999874
No 301
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-41 Score=293.97 Aligned_cols=175 Identities=21% Similarity=0.257 Sum_probs=148.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 84 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~ 84 (290)
++||++++||+++|+||||||||||+++|+|+.+|+ +|+|+++|.++....++.++|++|++.+++.+||.||+.+.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~ 94 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFW 94 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHH
Confidence 599999999999999999999999999999999984 89999999987542245699999998888889999999886
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
..... ..+.+.++++.+++.+..++. +..||||||||++|||||+.+|+++||||||+|||+.+
T Consensus 95 ~~~~~--------~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~ 158 (195)
T PRK13541 95 SEIYN--------SAETLYAAIHYFKLHDLLDEK--------CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN 158 (195)
T ss_pred HHhcc--------cHHHHHHHHHHcCCHhhhccC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 53321 123456788999998777777 45599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 201 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v 201 (290)
+..+.++|+.. .+.|.|+|++||++. . ...+|.+
T Consensus 159 ~~~l~~~l~~~-~~~~~tiii~sh~~~-~-i~~~~~~ 192 (195)
T PRK13541 159 RDLLNNLIVMK-ANSGGIVLLSSHLES-S-IKSAQIL 192 (195)
T ss_pred HHHHHHHHHHH-HhCCCEEEEEeCCcc-c-cchhhee
Confidence 99999999876 456899999999974 3 4456654
No 302
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2e-41 Score=337.33 Aligned_cols=195 Identities=24% Similarity=0.345 Sum_probs=160.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+++.++|++|++.+++ .|++|
T Consensus 352 ~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~ 427 (585)
T TIGR01192 352 FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRE 427 (585)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHH
Confidence 4799999999999999999999999999999999994 8999999998854 46788999999998886 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... +.++ +.++++..+ +.+..++.+++. ...||||||||++|||||+.+|++||
T Consensus 428 Ni~~~~~~~-----~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~----~~~LSgGq~qrl~lARall~~p~ili 494 (585)
T TIGR01192 428 NIRLGREGA-----TDEE----VYEAAKAAAAHDFILKRSNGYDTLVGER----GNRLSGGERQRLAIARAILKNAPILV 494 (585)
T ss_pred HHhcCCCCC-----CHHH----HHHHHHHhCcHHHHHhccccccchhcCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998853211 1111 112222222 233345555553 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.++..+.+.|.++ .+ ++|+|++||++ +.+ ..||++++|++|+++..|+.+++.
T Consensus 495 lDEpts~LD~~~~~~i~~~l~~~-~~-~~tvI~isH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 495 LDEATSALDVETEARVKNAIDAL-RK-NRTTFIIAHRL-STV-RNADLVLFLDQGRLIEKGSFQELI 557 (585)
T ss_pred EECCccCCCHHHHHHHHHHHHHH-hC-CCEEEEEEcCh-HHH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999988 43 79999999997 344 679999999999999999998765
No 303
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-41 Score=286.22 Aligned_cols=149 Identities=35% Similarity=0.562 Sum_probs=134.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.++|+||++.+++ .|++|
T Consensus 19 ~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e 94 (171)
T cd03228 19 KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRE 94 (171)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHH
Confidence 4899999999999999999999999999999999984 7999999998753 24567999999987776 58887
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+ ||+||||||+|||||+.+|++|||||||+|
T Consensus 95 ~l------------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~g 126 (171)
T cd03228 95 NI------------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA 126 (171)
T ss_pred Hh------------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 75 599999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
||+.++..+.++|+++ .+ ++|||++||++ .++.. ||++++|++|+
T Consensus 127 LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 127 LDPETEALILEALRAL-AK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCHHHHHHHHHHHHHh-cC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 9999999999999998 44 69999999997 46665 99999999884
No 304
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.9e-41 Score=363.83 Aligned_cols=200 Identities=26% Similarity=0.365 Sum_probs=166.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-------------------------------------------
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD------------------------------------------- 40 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~------------------------------------------- 40 (290)
.|+||+|++|+.+||+||||||||||+++|.|+++|.
T Consensus 1185 ~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 (1466)
T PTZ00265 1185 KDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEG 1264 (1466)
T ss_pred cCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence 4799999999999999999999999999999999982
Q ss_pred --------CCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHH
Q psy2520 41 --------CIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE 108 (290)
Q Consensus 41 --------~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (290)
...+|+|++||.++.. .+|+.||||+|++.+|+ .|++|||.|+..-. +. +.+.++++.
T Consensus 1265 ~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~~a-----t~----eeI~~A~k~ 1334 (1466)
T PTZ00265 1265 GSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDA-----TR----EDVKRACKF 1334 (1466)
T ss_pred ccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCCCC-----CH----HHHHHHHHH
Confidence 0138999999999864 47899999999999885 69999999973211 11 112333333
Q ss_pred c-------CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc
Q psy2520 109 L-------GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181 (290)
Q Consensus 109 ~-------~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 181 (290)
. .|.+.+|+.+|+.+ ..||||||||++|||||+++|+|||||||||+||+.+...+.+.|.++...+++
T Consensus 1335 A~l~~fI~~LP~GydT~VGe~G----~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~ 1410 (1466)
T PTZ00265 1335 AAIDEFIESLPNKYDTNVGPYG----KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410 (1466)
T ss_pred cCCHHHHHhCccccCCccCCCC----CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCC
Confidence 3 35667889998853 459999999999999999999999999999999999999999999998323589
Q ss_pred EEEEEeCCCcHHHHhhcCeEEEEeC----CeEE-EEcCHHHHH
Q psy2520 182 TVLCTIHQPSSELIDMFDKIILLAD----SRTA-FIGSKDAAL 219 (290)
Q Consensus 182 tii~~tH~~~~~~~~~~d~v~~l~~----G~i~-~~g~~~~~~ 219 (290)
|+|+|+|++. ..+.||+|++|++ |+++ ..|+.++++
T Consensus 1411 TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1411 TIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred EEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999973 5678999999999 8965 799999765
No 305
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=328.61 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=160.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. ..+||++|++.+++.+||+|++.+
T Consensus 18 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~-------~~i~~~~q~~~~~~~~tv~e~l~~ 87 (530)
T PRK15064 18 ENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN-------ERLGKLRQDQFAFEEFTVLDTVIM 87 (530)
T ss_pred eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC-------CEEEEEeccCCcCCCCcHHHHHHH
Confidence 5899999999999999999999999999999999984 799999873 359999999888999999999987
Q ss_pred HHH-hc----------Cchh------------------hhHHHHHHHHHHHHHHcCCCCcc-CcccCCcCCCCCCCCChH
Q psy2520 84 MAL-LK----------LDRR------------------VKAYQRIALINSLLIELGLMNSQ-HTRIGSSSITQKVVLSGG 133 (290)
Q Consensus 84 ~~~-~~----------~~~~------------------~~~~~~~~~~~~~l~~~~l~~~~-~~~v~~~~~~~~~~LSgG 133 (290)
+.. .. .... ....+...++.++++.+|+.+.. ++. +.+||||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~~LSgG 159 (530)
T PRK15064 88 GHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL--------MSEVAPG 159 (530)
T ss_pred hhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc--------hhhcCHH
Confidence 531 00 0000 00001234577899999997643 455 4559999
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE-EEE
Q psy2520 134 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT-AFI 212 (290)
Q Consensus 134 qrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i-~~~ 212 (290)
|||||+||++|+.+|++|||||||++||+.++..+.++|++ .|.|||+|||++ ..+..+||++++|++|++ ++.
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~-~~~~~~~d~i~~l~~g~i~~~~ 234 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDR-HFLNSVCTHMADLDYGELRVYP 234 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCH-HHHHhhcceEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999863 378999999997 578899999999999999 478
Q ss_pred cCHHHHH
Q psy2520 213 GSKDAAL 219 (290)
Q Consensus 213 g~~~~~~ 219 (290)
|++++.+
T Consensus 235 g~~~~~~ 241 (530)
T PRK15064 235 GNYDEYM 241 (530)
T ss_pred CCHHHHH
Confidence 9888654
No 306
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-41 Score=298.53 Aligned_cols=169 Identities=25% Similarity=0.346 Sum_probs=152.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
+||||.+++||+++|+|+||||||||-|+|.|+.+| ++|+|+++|+++....
T Consensus 30 d~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~------------------------- 81 (268)
T COG4608 30 DGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLS------------------------- 81 (268)
T ss_pred cceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcc-------------------------
Confidence 589999999999999999999999999999999999 4899999999864311
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
...+.+++.++|+.+|+.. .+.+. +.+||||||||++|||||+.+|+++++|||+|+||.
T Consensus 82 -----------~~~~~~~v~elL~~Vgl~~~~~~ry--------PhelSGGQrQRi~IARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 82 -----------KEERRERVLELLEKVGLPEEFLYRY--------PHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred -----------hhHHHHHHHHHHHHhCCCHHHhhcC--------CcccCchhhhhHHHHHHHhhCCcEEEecCchhhcch
Confidence 2234466889999999964 67777 566999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
..+.+++++|+++..+.|.|.+++|||+ ..+..++||+.+|+.|+++..|+.++++.
T Consensus 143 SiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 143 SVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred hHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999877899999999997 57888999999999999999999998763
No 307
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.6e-41 Score=328.20 Aligned_cols=198 Identities=21% Similarity=0.282 Sum_probs=157.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCC--CCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSP--SLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~--~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+.++. ++|+|+++|+++.. ..++.+||++|++.++. ..+
T Consensus 277 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 354 (490)
T PRK10938 277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTS 354 (490)
T ss_pred eeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCc
Confidence 4799999999999999999999999999999987641 37999999987532 23567999999865543 346
Q ss_pred HHHHHHHHHHh--cCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 77 VYEHLYFMALL--KLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 77 v~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+.+++.+.... ....... ....+.+.++++.++|.+ ..+++ +.+|||||||||+|||||+.+|++|||
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGq~qrv~la~al~~~p~lllL 425 (490)
T PRK10938 355 VRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP--------FHSLSWGQQRLALIVRALVKHPTLLIL 425 (490)
T ss_pred HHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 77666543211 0000011 122345788999999987 77887 455999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh-hcCeEEEEeCCeEEEEc
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSRTAFIG 213 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~-~~d~v~~l~~G~i~~~g 213 (290)
||||+|||+.++..++++|++++++.+.|||++||++ .++.. +||++++|++|+++..-
T Consensus 426 DEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 426 DEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred cCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999654345799999997 46766 59999999999988654
No 308
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-40 Score=284.16 Aligned_cols=214 Identities=26% Similarity=0.318 Sum_probs=183.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.+||++|++||+.+|+||||||||||.++|+|.- .+..++|+|.++|+++.. +.|..+...||.|.-+|..|+.
T Consensus 21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p-~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~ 99 (251)
T COG0396 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP-KYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNS 99 (251)
T ss_pred cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC-CceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHH
Confidence 4799999999999999999999999999999973 334579999999999865 4677899999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
+.|..+............+..+.+.+.++.+++.. +++|.+.. ++|||||||..|+.+++.+|++.|||||-
T Consensus 100 ~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~-------GFSGGEkKR~EilQ~~~lePkl~ILDE~D 172 (251)
T COG0396 100 DFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE-------GFSGGEKKRNEILQLLLLEPKLAILDEPD 172 (251)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC-------CcCcchHHHHHHHHHHhcCCCEEEecCCC
Confidence 99988765432211112344566788999999976 77888665 49999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc--CeEEEEeCCeEEEEcCHHHHHHHHHHCCCCC
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF--DKIILLADSRTAFIGSKDAALAFLESQGYPC 229 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~--d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~ 229 (290)
||||..+-+.+.+.+..+ ++.|.+++++||.. .+..+. |++.+|.+|+|+..|.+ ++...++..|+.|
T Consensus 173 SGLDIdalk~V~~~i~~l-r~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 173 SGLDIDALKIVAEGINAL-REEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred cCccHHHHHHHHHHHHHH-hcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 999999999999999999 56699999999984 677876 99999999999999999 7888888888754
No 309
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=332.23 Aligned_cols=199 Identities=29% Similarity=0.424 Sum_probs=173.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c----ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K----FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. . .++.++|+||++.+++.+
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 4899999999999999999999999999999999984 8999999999754 1 146799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|+.||+.+...... ....+..+++.++++.++|.+..++. +..||+||+||++|||||+.+|++|||||
T Consensus 102 tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~lgl~~~~~~~--------~~~LS~Gq~qrv~LAraL~~~P~lLllDE 170 (648)
T PRK10535 102 TAAQNVEVPAVYAG---LERKQRLLRAQELLQRLGLEDRVEYQ--------PSQLSGGQQQRVSIARALMNGGQVILADE 170 (648)
T ss_pred CHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999988653322 12233445678899999998888888 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+.++|++++ ++|.|+|++||++ .. ...||++++|++|++++.|++++..
T Consensus 171 P~~gLD~~s~~~l~~ll~~l~-~~g~tilivsH~~-~~-~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 171 PTGALDSHSGEEVMAILHQLR-DRGHTVIIVTHDP-QV-AAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-hcCCEEEEECCCH-HH-HHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999984 4589999999997 34 4679999999999999999998664
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.8e-40 Score=328.68 Aligned_cols=191 Identities=26% Similarity=0.334 Sum_probs=159.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.+++ ...+||++|++.+++.+||.||+.+
T Consensus 24 ~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~-------~~~i~~v~Q~~~~~~~~tv~e~l~~ 93 (556)
T PRK11819 24 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAP-------GIKVGYLPQEPQLDPEKTVRENVEE 93 (556)
T ss_pred eCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecC-------CCEEEEEecCCCCCCCCcHHHHHHH
Confidence 4899999999999999999999999999999999984 79999975 2469999999999999999999987
Q ss_pred HHHh-c-------------Cchh--hh-----------------HHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCC
Q psy2520 84 MALL-K-------------LDRR--VK-----------------AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130 (290)
Q Consensus 84 ~~~~-~-------------~~~~--~~-----------------~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~L 130 (290)
+... . .... .. ......++.++++.+|+.. .+++ +.+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~--------~~~L 164 (556)
T PRK11819 94 GVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAK--------VTKL 164 (556)
T ss_pred hhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCc--------hhhc
Confidence 5321 0 0000 00 0011345778899999964 6777 4559
Q ss_pred ChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE
Q psy2520 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 210 (290)
Q Consensus 131 SgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~ 210 (290)
||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ . .|||++||++ .++..+||++++|++|+++
T Consensus 165 SgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~-~---~tviiisHd~-~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 165 SGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY-P---GTVVAVTHDR-YFLDNVAGWILELDRGRGI 239 (556)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC-C---CeEEEEeCCH-HHHHhhcCeEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999987 2 4999999997 5788899999999999986
Q ss_pred -EEcCHHHH
Q psy2520 211 -FIGSKDAA 218 (290)
Q Consensus 211 -~~g~~~~~ 218 (290)
+.|+.++.
T Consensus 240 ~~~g~~~~~ 248 (556)
T PRK11819 240 PWEGNYSSW 248 (556)
T ss_pred EecCCHHHH
Confidence 77887754
No 311
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.2e-40 Score=299.50 Aligned_cols=185 Identities=26% Similarity=0.413 Sum_probs=147.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||++++||+++|+||||||||||+++|+|+++|. +|+|.++| .++|++|++.+++. ||+||+.+
T Consensus 54 ~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g---------~i~yv~q~~~l~~~-tv~enl~~ 120 (282)
T cd03291 54 KNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG---------RISFSSQFSWIMPG-TIKENIIF 120 (282)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------EEEEEeCccccccc-CHHHHhhc
Confidence 4799999999999999999999999999999999984 79999988 39999999888774 99999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-------cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNS-------QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
..... .. .+.++++.+++.+. .++.++.. +..||||||||++|||+|+.+|++||||||
T Consensus 121 ~~~~~---~~-------~~~~~l~~~~l~~~l~~~~~~~~~~~~~~----~~~LSgGq~qrv~lAraL~~~p~iLiLDEP 186 (282)
T cd03291 121 GVSYD---EY-------RYKSVVKACQLEEDITKFPEKDNTVLGEG----GITLSGGQRARISLARAVYKDADLYLLDSP 186 (282)
T ss_pred ccccC---HH-------HHHHHHHHhCCHHHHHhccccccceecCC----CCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 53211 00 01122222232211 11122111 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMM-RELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l-~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++.+ +.+ ++ +.|||++||++. .+ ..||++++|++|++++.|+++++.
T Consensus 187 t~gLD~~~~~~l~~~ll~~~-~~-~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 187 FGYLDVFTEKEIFESCVCKL-MA-NKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CccCCHHHHHHHHHHHHHHh-hC-CCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999864 566 33 789999999974 54 689999999999999999988764
No 312
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.1e-40 Score=278.00 Aligned_cols=141 Identities=33% Similarity=0.497 Sum_probs=127.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.++||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|+||
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~~i~~~~q----------- 82 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARRAGIAMVYQ----------- 82 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHhcCeEEEEe-----------
Confidence 4799999999999999999999999999999999984 7999999998753 13456777777
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||||||||++|||||+.+|+++||||||+
T Consensus 83 ---------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~~ 111 (163)
T cd03216 83 ---------------------------------------------------LSVGERQMVEIARALARNARLLILDEPTA 111 (163)
T ss_pred ---------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 69999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
+||+.++..+.+.|++++ ++|.|+|++||++ .++..+||++++|++|++++
T Consensus 112 ~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 112 ALTPAEVERLFKVIRRLR-AQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 999999999999999994 4589999999997 46888999999999999874
No 313
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-41 Score=295.44 Aligned_cols=203 Identities=27% Similarity=0.368 Sum_probs=172.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEc-cCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMY-QHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~-Q~~~~~~~lTv~e 79 (290)
-||||++.+|++++++|||||||||+||+|+|++.|+ +|.|.++|.+... .+-+.+++|+ |...+.-.+.+.+
T Consensus 41 qdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred heeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 3899999999999999999999999999999999994 8999999987643 2445677775 4355555556777
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
.+......+ .+....-.++.+.+.+.++|....+.+ ++.||-|||.|+.||.+|+++|+||+|||||-|
T Consensus 118 s~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~--------vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 118 SLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP--------VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh--------hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 766544443 233445556778888899999888888 455999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 221 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 221 (290)
||..++..+.+.|++.+.+++.||+++||++ ..+..+||||++|++|+++++|+.+++...
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 9999999999999999888899999999998 479999999999999999999999977543
No 314
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3e-40 Score=278.88 Aligned_cols=147 Identities=34% Similarity=0.476 Sum_probs=130.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|. +.++|++|++.++ ..|+.||+.+
T Consensus 18 ~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~-------~~i~~~~q~~~~~-~~tv~~nl~~ 86 (166)
T cd03223 18 KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG-------EDLLFLPQRPYLP-LGTLREQLIY 86 (166)
T ss_pred ecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC-------ceEEEECCCCccc-cccHHHHhhc
Confidence 4899999999999999999999999999999999984 899999873 5699999997765 5799999875
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
. . +..||||||||++|||||+.+|+++||||||++||+.
T Consensus 87 ~---------------------------------~--------~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~ 125 (166)
T cd03223 87 P---------------------------------W--------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125 (166)
T ss_pred c---------------------------------C--------CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHH
Confidence 2 1 2349999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
++..+.+.|+++ +.|+|++||++. ...+||++++|+++.
T Consensus 126 ~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 126 SEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 999999999876 479999999973 457999999998764
No 315
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1e-40 Score=314.55 Aligned_cols=206 Identities=30% Similarity=0.453 Sum_probs=177.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||.+.+|+.++||||||||||||.|+|.|..+| ++|.|.+||-++.+ .+-+.|||+||+-.+|+. ||.|
T Consensus 353 ~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p---~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIae 428 (580)
T COG4618 353 KGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAE 428 (580)
T ss_pred ecceeEecCCceEEEECCCCccHHHHHHHHHccccc---CCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHH
Confidence 589999999999999999999999999999999999 48999999999865 367899999999888875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||.-+.......++-+..+...+.+++- .+.+-+|+.+|+.+ ..||||||||+++||||..+|.+++||||-++
T Consensus 429 NIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~G----~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN 502 (580)
T COG4618 429 NIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEGG----ATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502 (580)
T ss_pred HHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCCC----CCCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 9975432222223333444445666653 56788999999974 45999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 222 (290)
||......+.+.|.++ +.+|.|+|++||.| .+...+|+|++|++|++-.+|+.++++..+
T Consensus 503 LD~~GE~AL~~Ai~~~-k~rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 503 LDSEGEAALAAAILAA-KARGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cchhHHHHHHHHHHHH-HHcCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999 56799999999998 367889999999999999999999987644
No 316
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-41 Score=318.71 Aligned_cols=195 Identities=30% Similarity=0.437 Sum_probs=168.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.+||+|+||||||||+..|+|.++|+ +|+|.++|.++.. .+++.+++++|...+|.. |+++
T Consensus 355 ~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~ 430 (573)
T COG4987 355 KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRD 430 (573)
T ss_pred hccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHH
Confidence 5899999999999999999999999999999999995 8999999998854 378899999999888875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-------ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++..-. + .+.+.++++.+||.+ ..++.+|+.+ ..||||||||++|||+|+++.+++|
T Consensus 431 NL~lA~~~A-----s----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G----~~LSGGE~rRLAlAR~LL~dapl~l 497 (573)
T COG4987 431 NLRLANPDA-----S----DEELWAALQQVGLEKLLESAPDGLNTWLGEGG----RRLSGGERRRLALARALLHDAPLWL 497 (573)
T ss_pred HHhhcCCCC-----C----HHHHHHHHHHcCHHHHHHhChhhhhchhccCC----CcCCchHHHHHHHHHHHHcCCCeEE
Confidence 998864221 1 233556777777754 3455778764 4599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||.|||+.+.+++++.|.+.. +|+|+|++||+.. -.+.||||++|++|+++++|++.+++
T Consensus 498 LDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll 560 (573)
T COG4987 498 LDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELL 560 (573)
T ss_pred ecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhh
Confidence 999999999999999999999873 3899999999974 36789999999999999999999765
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-40 Score=324.48 Aligned_cols=185 Identities=25% Similarity=0.381 Sum_probs=158.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCC--CCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL--FSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~--~~~~lTv~e~l 81 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+ +.+||++|++. +++.+||.+++
T Consensus 336 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~-------~~i~~~~q~~~~~~~~~~t~~~~~ 405 (530)
T PRK15064 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN-------ANIGYYAQDHAYDFENDLTLFDWM 405 (530)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc-------eEEEEEcccccccCCCCCcHHHHH
Confidence 4799999999999999999999999999999999984 799999873 46999999863 56679999998
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.+... . . ...+.+.++++.+++. +..+++ +.+|||||||||+|||+|+.+|++|||||||+||
T Consensus 406 ~~~~~---~-~----~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~L 469 (530)
T PRK15064 406 SQWRQ---E-G----DDEQAVRGTLGRLLFSQDDIKKS--------VKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHM 469 (530)
T ss_pred HHhcc---C-C----ccHHHHHHHHHHcCCChhHhcCc--------ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 65211 0 0 0123467899999994 567777 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 219 (290)
|+.++..+.+.|+++ +.|||++|||+ .++..+||++++|++|+++ +.|++.+++
T Consensus 470 D~~~~~~l~~~l~~~----~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 470 DMESIESLNMALEKY----EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred CHHHHHHHHHHHHHC----CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 999999999999876 24999999997 5788899999999999998 789888653
No 318
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.4e-40 Score=324.99 Aligned_cols=193 Identities=26% Similarity=0.323 Sum_probs=158.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||+|++|++++|+|||||||||||++|+|+.+|+ +|+|.+++ +..|||++|++.+++.+||.||+.+
T Consensus 22 ~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~-------~~~i~~v~Q~~~~~~~~tv~e~i~~ 91 (552)
T TIGR03719 22 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAP-------GIKVGYLPQEPQLDPTKTVRENVEE 91 (552)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecC-------CCEEEEEeccCCCCCCCcHHHHHHH
Confidence 5899999999999999999999999999999999984 79999975 2469999999999999999999987
Q ss_pred HHHh-c-------------CchhhhH-------------------HHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCC
Q psy2520 84 MALL-K-------------LDRRVKA-------------------YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130 (290)
Q Consensus 84 ~~~~-~-------------~~~~~~~-------------------~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~L 130 (290)
+... . ....... .....++.++++.+++.. .+++ +..|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--------~~~L 162 (552)
T TIGR03719 92 GVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDAD--------VTKL 162 (552)
T ss_pred hhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCc--------hhhc
Confidence 5321 0 0000000 001134567788888853 5666 4559
Q ss_pred ChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE
Q psy2520 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 210 (290)
Q Consensus 131 SgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~ 210 (290)
||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+|||++ ..+..+||++++|++|+++
T Consensus 163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~-~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDR-YFLDNVAGWILELDRGRGI 237 (552)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCH-HHHHhhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999876 24999999997 5788899999999999976
Q ss_pred -EEcCHHHHHH
Q psy2520 211 -FIGSKDAALA 220 (290)
Q Consensus 211 -~~g~~~~~~~ 220 (290)
+.|+.++..+
T Consensus 238 ~~~g~~~~~~~ 248 (552)
T TIGR03719 238 PWEGNYSSWLE 248 (552)
T ss_pred EecCCHHHHHH
Confidence 7788886543
No 319
>KOG0065|consensus
Probab=100.00 E-value=2.1e-40 Score=339.90 Aligned_cols=272 Identities=30% Similarity=0.481 Sum_probs=236.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-ccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-FRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+|+.++||+++.++||.||||||||++++|-++......|+|.+||.+.+.. -++.++|+.|++..+|.|||+|.|.
T Consensus 132 ~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTld 211 (1391)
T KOG0065|consen 132 KDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLD 211 (1391)
T ss_pred cCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhh
Confidence 479999999999999999999999999999998876544578999999998763 3578999999999999999999999
Q ss_pred HHHHhcCchh----hhHHHHH-HHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 83 FMALLKLDRR----VKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 83 ~~~~~~~~~~----~~~~~~~-~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+++.+.+.. ..+.+.. ...+.+++.+||.+++|+.+|++.+ ++.|||||+||++|.+++.+|+++++||+|
T Consensus 212 Fa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~---RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 212 FAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMV---RGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred HHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceeccccc---ccccCcccceeeeeeeeecCcceeeeeccc
Confidence 9998876521 2222221 2467899999999999999999876 569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHHCCCCCCCCCChHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPAD 237 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~~~~~~~~~ 237 (290)
+|||..++.++++.|+.+++..+.|.+++.+|+..++++++|.|++|.+|+++|+|+.++++++|++.|+.||.+..++|
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~AD 368 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTAD 368 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHH
Confidence 99999999999999999988789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCc-------hhhhHHHHHHHHHHHhhhchhHHhHhhhhh
Q psy2520 238 FLIKSLAVTTN-------DELSSRRRLKRICDEFSVCDFAKEVDLEIN 278 (290)
Q Consensus 238 ~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 278 (290)
++.++.+.... ...-......++.+.|..++.+++...+.+
T Consensus 369 fLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~ 416 (1391)
T KOG0065|consen 369 FLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELS 416 (1391)
T ss_pred HHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhc
Confidence 99998761110 001111234788999999999999888876
No 320
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.1e-40 Score=326.38 Aligned_cols=182 Identities=23% Similarity=0.253 Sum_probs=157.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++ ..++|+||+..+++.+||+|++.+
T Consensus 356 ~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~---------~~i~y~~Q~~~~~~~~tv~e~l~~ 423 (590)
T PRK13409 356 EVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE---------LKISYKPQYIKPDYDGTVEDLLRS 423 (590)
T ss_pred EecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe---------eeEEEecccccCCCCCcHHHHHHH
Confidence 3678999999999999999999999999999999994 7999985 159999999888889999999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
..... .. ...+.++++.++|.+..++. +.+|||||||||+||+||+.+|++|||||||+|||+.
T Consensus 424 ~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~--------~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~ 487 (590)
T PRK13409 424 ITDDL-----GS---SYYKSEIIKPLQLERLLDKN--------VKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 487 (590)
T ss_pred Hhhhc-----Ch---HHHHHHHHHHCCCHHHHhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 53211 11 12357899999998888888 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 215 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~ 215 (290)
++..+.++|++++++.|.|||++|||+ .++..+|||+++|+ |++...|..
T Consensus 488 ~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 488 QRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 999999999999665689999999997 57888999999996 577776653
No 321
>KOG0055|consensus
Probab=100.00 E-value=2.1e-40 Score=339.81 Aligned_cols=203 Identities=27% Similarity=0.416 Sum_probs=171.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+|+++++|+.+||+|||||||||.+.+|-.++.|. +|.|.+||.++.+ .+|+++|.|.|+|.||.. |++|
T Consensus 1007 ~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrE 1082 (1228)
T KOG0055|consen 1007 NNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRE 1082 (1228)
T ss_pred cCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHH
Confidence 4789999999999999999999999999999999994 8999999999976 479999999999999875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||.|+..--...++.+..+.+.+.+.+ .+|++-+|+.+|+. ..+||||||||++||||+++||+||||||.||+
T Consensus 1083 NI~YG~~~vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGer----G~QLSGGQKQRIAIARAilRnPkILLLDEATSA 1156 (1228)
T KOG0055|consen 1083 NIAYGSEEVSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGER----GVQLSGGQKQRIAIARAILRNPKILLLDEATSA 1156 (1228)
T ss_pred HHhccCCCCCHHHHHHHHHHhhhHHHH--hcCcCcccCccCcc----cCcCCchHHHHHHHHHHHHcCCCeeeeeccchh
Confidence 999982110101111111112222222 36788999999986 456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||.++.+-+.+.|.+. . .|+|.|+|.|.++ ..+.||.|+++++|++++.|+.++++.
T Consensus 1157 LDseSErvVQeALd~a-~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRA-M-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hhhhhHHHHHHHHHHh-h-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999999999998 4 4899999999974 568899999999999999999998764
No 322
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.5e-40 Score=327.23 Aligned_cols=168 Identities=32% Similarity=0.404 Sum_probs=142.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||.+||+||||||||||+++|+|+++|+ +|+|.+||.++.+ .+|+.++||||++.+|+. |++||
T Consensus 352 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eN 427 (529)
T TIGR02868 352 DGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDN 427 (529)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHH
Confidence 4899999999999999999999999999999999995 8999999998864 477899999999998875 99999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
|.++.... + .+++.++++..++ ++..|+.+|+.+ ..||||||||++|||||+.+|++|||
T Consensus 428 I~~g~~~~-----~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G----~~LSGGQrQRiaiARall~~~~iliL 494 (529)
T TIGR02868 428 LRLGRPDA-----T----DEELWAALERVGLADWLRSLPDGLDTVLGEGG----ARLSGGERQRLALARALLADAPILLL 494 (529)
T ss_pred HhccCCCC-----C----HHHHHHHHHHcCCHHHHHhCcccccchhcccc----CcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99863211 1 1223445555444 455688888753 45999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
|||||+||+.+...+.+.|.++ . +++|+|++||++
T Consensus 495 DE~TSaLD~~te~~I~~~l~~~-~-~~~TvIiItHrl 529 (529)
T TIGR02868 495 DEPTEHLDAGTESELLEDLLAA-L-SGKTVVVITHHL 529 (529)
T ss_pred eCCcccCCHHHHHHHHHHHHHh-c-CCCEEEEEecCC
Confidence 9999999999999999999987 3 479999999974
No 323
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.9e-40 Score=325.21 Aligned_cols=180 Identities=34% Similarity=0.460 Sum_probs=151.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+|+++++|+.++|+||||||||||+++|+|+++|+ +|+|.+||.++.. .+++.++||+|++.+|+ .|++|
T Consensus 339 ~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~ 414 (529)
T TIGR02857 339 RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIAE 414 (529)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-cCHHH
Confidence 4899999999999999999999999999999999995 8999999999864 47889999999998886 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... + .+.+.++++..++. +..|+.+++. ...||||||||++|||||+++|+++|
T Consensus 415 Ni~~~~~~~-----~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~----g~~LSgGq~qri~laRal~~~~~ili 481 (529)
T TIGR02857 415 NIRLARPDA-----S----DAEIRRALERAGLDEFVAALPQGLDTLIGEG----GAGLSGGQAQRLALARAFLRDAPLLL 481 (529)
T ss_pred HHhccCCCC-----C----HHHHHHHHHHcCcHHHHHhCcccccchhccc----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998853211 1 12234555555553 3456777764 35699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
|||||++||+.+...+.+.|.++ . .++|+|++||++. ..+.||+|++|
T Consensus 482 lDE~ts~lD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 482 LDEPTAHLDAETEALVTEALRAL-A-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred EeCcccccCHHHHHHHHHHHHHh-c-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 99999999999999999999998 3 4799999999973 45789999875
No 324
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.7e-40 Score=353.84 Aligned_cols=194 Identities=24% Similarity=0.252 Sum_probs=165.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||+|++||.+||+||||||||||+++|.|+++|. +|+|.+||.++.. .+|++++||||++.+|+. |++|
T Consensus 1253 ~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~ 1328 (1495)
T PLN03232 1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRF 1328 (1495)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999864 478999999999999875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++.. . + .+++.++++..++ .+..|+.+++. ..+||||||||++|||||+++|+|||
T Consensus 1329 NL~~~~~-~-----s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~----G~~LSgGQrQrlaLARALLr~~~ILI 1394 (1495)
T PLN03232 1329 NIDPFSE-H-----N----DADLWEALERAHIKDVIDRNPFGLDAEVSEG----GENFSVGQRQLLSLARALLRRSKILV 1394 (1495)
T ss_pred HcCCCCC-C-----C----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC----CCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9976421 1 1 1224455555554 34567777775 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+||+.+...|.+.|++. . +++|+|+|+|+++ ....||+|++|++|++++.|++++++
T Consensus 1395 LDEATSaLD~~Te~~Iq~~L~~~-~-~~~TvI~IAHRl~--ti~~~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1395 LDEATASVDVRTDSLIQRTIREE-F-KSCTMLVIAHRLN--TIIDCDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999987 3 4799999999973 34569999999999999999999875
No 325
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.8e-40 Score=353.46 Aligned_cols=195 Identities=25% Similarity=0.279 Sum_probs=166.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||+|+|||.+||+|+||||||||+++|.|+++|. +|+|+|||.++.. .+|++|++|||++.+|.. |++|
T Consensus 1256 ~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIre 1331 (1622)
T PLN03130 1256 HGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRF 1331 (1622)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHH
Confidence 5899999999999999999999999999999999994 8999999999875 478999999999999875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++.. . + .+.+.++++..++ ....|+.+++. ..+||||||||++|||||+++|+|||
T Consensus 1332 NLd~~~~-~-----t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~----G~nLSgGQrQrlaLARALLr~p~ILI 1397 (1622)
T PLN03130 1332 NLDPFNE-H-----N----DADLWESLERAHLKDVIRRNSLGLDAEVSEA----GENFSVGQRQLLSLARALLRRSKILV 1397 (1622)
T ss_pred HhCcCCC-C-----C----HHHHHHHHHHcCcHHHHHhCccccCccccCC----CCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9986421 1 1 1223444444443 34567788775 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||||+||+.+...|.+.|++. . .++|+|+|+|+++ ....||||++|++|++++.|++++++.
T Consensus 1398 LDEATSaLD~~Te~~Iq~~I~~~-~-~~~TvI~IAHRL~--tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1398 LDEATAAVDVRTDALIQKTIREE-F-KSCTMLIIAHRLN--TIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EECCCCCCCHHHHHHHHHHHHHH-C-CCCEEEEEeCChH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999987 3 3799999999974 345699999999999999999998763
No 326
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9e-40 Score=279.65 Aligned_cols=199 Identities=29% Similarity=0.388 Sum_probs=168.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc----ccccEEEEccCC--CCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQHD--LFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~----~~~~ig~v~Q~~--~~~~~lTv 77 (290)
.++|+++..|+++.|+|.||||||||+++|+|-+.|+ +|+|.|+|.++++. ....++-|||+| ..++.||+
T Consensus 23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTi 99 (263)
T COG1101 23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTI 99 (263)
T ss_pred hcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccH
Confidence 4789999999999999999999999999999999994 89999999999762 234688899996 57899999
Q ss_pred HHHHHHHHHhc---CchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 78 YEHLYFMALLK---LDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 78 ~e~l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.||+..+.... ....--...+.+...+.+..+ ||++..+.+++- |||||||-++++.|.++.|+|||
T Consensus 100 eENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl--------LSGGQRQalsL~MAtl~~pkiLL 171 (263)
T COG1101 100 EENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL--------LSGGQRQALSLLMATLHPPKILL 171 (263)
T ss_pred HHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh--------ccchHHHHHHHHHHhcCCCcEEE
Confidence 99999875421 111111233444455666665 557888888554 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
|||-|++|||.++..+++.-.++.++.+.|.++|||++ ..+.++.+|.++|++|+|+.+-.
T Consensus 172 LDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 172 LDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred ecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999999999999999999888899999999998 57899999999999999998743
No 327
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.3e-39 Score=293.04 Aligned_cols=184 Identities=24% Similarity=0.277 Sum_probs=152.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEE-----------ECCEecCc---ccc---ccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR-----------VNGKPVEG---KFR---SACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~-----------i~G~~~~~---~~~---~~ig~v~ 66 (290)
.|+| .+++|++++|+|||||||||||++|+|+++|+ +|+|+ ++|+++.. ..+ ..++|++
T Consensus 18 ~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 18 HRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 4677 48999999999999999999999999999995 89996 78887743 111 2478999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 67 Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
|...+++. ++.+++.+.... ......+.++++.+++.+..++. +..||||||||++|||+|+.
T Consensus 94 ~~~~~~~~-~~~~~i~~~l~~--------~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 94 QYVDLIPK-AVKGKVGELLKK--------KDERGKLDELVDQLELRHVLDRN--------IDQLSGGELQRVAIAAALAR 156 (255)
T ss_pred chhccCch-HHHHHHHHHhch--------hHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHHh
Confidence 98777774 888888764311 11224567899999998877777 45599999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
+|+++||||||++||+.++..+.+.|+++++ .++|||++||++ .++..+||++++|+ |++.+
T Consensus 157 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 157 DADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCc
Confidence 9999999999999999999999999999954 589999999997 57778999999995 65654
No 328
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-39 Score=298.58 Aligned_cols=206 Identities=24% Similarity=0.367 Sum_probs=178.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCCccEEEECCEecCc-------ccc-ccEEEEccCC--CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD--DCIIDGDIRVNGKPVEG-------KFR-SACGFMYQHD--LF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~--~~~~~G~I~i~G~~~~~-------~~~-~~ig~v~Q~~--~~ 71 (290)
.+|||++.+||.+||+|.||||||-..+.++|+++. ....+|+|.|+|+++-. .+| .+|+++||+| .+
T Consensus 27 k~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSL 106 (534)
T COG4172 27 KGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSL 106 (534)
T ss_pred ccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEeccccccc
Confidence 479999999999999999999999999999999875 23458999999999743 133 4799999997 56
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCcc---CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ---HTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
.|-.|+...+.-....+.. .+..+.++++.++|+.+|+.+-. +.+ +.+|||||||||.||.||+.+|
T Consensus 107 NPl~tIg~Qi~E~l~~Hrg--~~~~~Ar~r~lelL~~VgI~~p~~rl~~y--------PHeLSGGqRQRVMIAMALan~P 176 (534)
T COG4172 107 NPLHTIGKQLAEVLRLHRG--LSRAAARARALELLELVGIPEPEKRLDAY--------PHELSGGQRQRVMIAMALANEP 176 (534)
T ss_pred CcHhHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHcCCCchhhhhhhC--------CcccCcchhhHHHHHHHHcCCC
Confidence 7878999888877766532 34556667889999999997643 444 6779999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
++||.||||++||...+.+|+++|+++.++.|+.++++|||+ ..+.+++|||++|.+|+++..|+++.++.
T Consensus 177 ~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 177 DLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVETGTTETLFA 247 (534)
T ss_pred CeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence 999999999999999999999999999888899999999998 57888999999999999999999998773
No 329
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.4e-39 Score=318.75 Aligned_cols=187 Identities=26% Similarity=0.324 Sum_probs=156.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC-CCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD-LFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~-~~~~~lTv~e~l~ 82 (290)
.||||++++|++++|+|||||||||||++|+|+++|+ +|+|.+++ + ..+||++|++ .+++.+||+||+.
T Consensus 341 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~-~------~~i~~v~q~~~~~~~~~tv~e~l~ 410 (556)
T PRK11819 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGE-T------VKLAYVDQSRDALDPNKTVWEEIS 410 (556)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECC-c------eEEEEEeCchhhcCCCCCHHHHHH
Confidence 4799999999999999999999999999999999984 79999954 2 1599999986 7888999999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
+......... . ...+..+++.+++.. ..++. +.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 411 ~~~~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 411 GGLDIIKVGN-R----EIPSRAYVGRFNFKGGDQQKK--------VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477 (556)
T ss_pred hhcccccccc-c----HHHHHHHHHhCCCChhHhcCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 8643221110 1 112346899999964 56777 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC-CeEE-EEcCHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTA-FIGSKDAA 218 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~-G~i~-~~g~~~~~ 218 (290)
+.++..+++.|+++ . | |||++|||+ .++..+||++++|++ |++. +.|+.++.
T Consensus 478 ~~~~~~l~~~l~~~-~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 478 VETLRALEEALLEF-P--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHHHHHHHHhC-C--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 99999999999987 2 4 899999997 578899999999986 7876 56776643
No 330
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.7e-39 Score=349.41 Aligned_cols=194 Identities=24% Similarity=0.319 Sum_probs=166.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .+|+.|+||||++.+|+. |+++
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIre 1402 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQ 1402 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHH
Confidence 4899999999999999999999999999999999994 7999999999865 478999999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC-CCeE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD-PALL 151 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~-p~ll 151 (290)
||..+. ..+ .+.+.++++..++. +..|+.+++.+ .+||||||||++|||||+++ |+||
T Consensus 1403 NIdp~~------~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G----~nLSgGQrQrLaLARALL~~~~~IL 1468 (1560)
T PTZ00243 1403 NVDPFL------EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGG----SNYSVGQRQLMCMARALLKKGSGFI 1468 (1560)
T ss_pred HhCccc------CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCc----CcCCHHHHHHHHHHHHHhcCCCCEE
Confidence 996431 111 13355666666664 34677777753 45999999999999999996 8999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||||+||+.+...|.+.|++. . +++|+|+|+|++ .....||+|++|++|+++..|++++++
T Consensus 1469 lLDEATSaLD~~te~~Iq~~L~~~-~-~~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1469 LMDEATANIDPALDRQIQATVMSA-F-SAYTVITIAHRL--HTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH-C-CCCEEEEEeccH--HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999986 3 379999999997 356789999999999999999999875
No 331
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.4e-39 Score=320.09 Aligned_cols=187 Identities=21% Similarity=0.314 Sum_probs=153.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.. .+++.++|++|++.+|+. |+++
T Consensus 340 ~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~ 415 (547)
T PRK10522 340 GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGP 415 (547)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhcc
Confidence 4899999999999999999999999999999999994 8999999999864 477899999999887764 7777
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
| + . . ...+.+.++++.+++....+.. +... +...||||||||++|||||+.+|++|||||||++
T Consensus 416 n---~---~---~----~~~~~~~~~~~~~~l~~~~~~~--~~~~-~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~ 479 (547)
T PRK10522 416 E---G---K---P----ANPALVEKWLERLKMAHKLELE--DGRI-SNLKLSKGQKKRLALLLALAEERDILLLDEWAAD 479 (547)
T ss_pred c---c---C---c----hHHHHHHHHHHHcCCchhhhcc--ccCC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 6 1 0 0 1123456788888886543321 1000 0245999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEE
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 212 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~ 212 (290)
||+.+...+.+.|.+..++.++|+|++||++ .....||++++|++|+++..
T Consensus 480 LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 480 QDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 9999999999998866344589999999997 35678999999999999876
No 332
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.8e-39 Score=317.17 Aligned_cols=186 Identities=24% Similarity=0.313 Sum_probs=154.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC-CCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD-LFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~-~~~~~lTv~e~l~ 82 (290)
.|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|++++ + ..|||++|++ .+++.+||.||+.
T Consensus 339 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~-~------~~i~~v~q~~~~~~~~~tv~e~l~ 408 (552)
T TIGR03719 339 DDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGE-T------VKLAYVDQSRDALDPNKTVWEEIS 408 (552)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECC-c------eEEEEEeCCccccCCCCcHHHHHH
Confidence 4799999999999999999999999999999999984 89999954 2 1599999986 4788899999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
++........ . ...+.++++.+++.. ..++. +..|||||||||+|||+|+.+|++|||||||+|||
T Consensus 409 ~~~~~~~~~~---~--~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD 475 (552)
T TIGR03719 409 GGLDIIQLGK---R--EVPSRAYVGRFNFKGSDQQKK--------VGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475 (552)
T ss_pred hhccccccCc---c--hHHHHHHHHhCCCChhHhcCc--------hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 8643221111 1 112457899999964 46777 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC-CeEE-EEcCHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTA-FIGSKDA 217 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~-G~i~-~~g~~~~ 217 (290)
+.++..+.++|+++ . + |||++|||+ .++..+||++++|++ |++. +.|+.++
T Consensus 476 ~~~~~~l~~~l~~~-~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 476 VETLRALEEALLEF-A--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHHHHHHHHHC-C--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 99999999999987 2 4 899999997 578889999999986 5776 5576654
No 333
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.9e-40 Score=276.57 Aligned_cols=202 Identities=25% Similarity=0.373 Sum_probs=176.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECC-EecCc----c-ccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG-KPVEG----K-FRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G-~~~~~----~-~~~~ig~v~Q~~~~~~~lTv 77 (290)
.++||++.+||+-+|||||||||||++.+|+|..+|. +|+|+++| .++.. . .+..||-=||.|..|..+||
T Consensus 22 n~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV 98 (249)
T COG4674 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTV 98 (249)
T ss_pred eeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccH
Confidence 4799999999999999999999999999999999994 79999999 77764 2 45679999999999999999
Q ss_pred HHHHHHHHHhcCch-----hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 78 YEHLYFMALLKLDR-----RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 78 ~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
+|||..+....... .....+...+++++|...||.+.++.. ...||-||||++.|++.++++|++|+
T Consensus 99 ~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~--------A~~LSHGqKQwLEIGMll~Q~P~lLL 170 (249)
T COG4674 99 RENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL--------AALLSHGQKQWLEIGMLLAQDPKLLL 170 (249)
T ss_pred HHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh--------hhhhccchhhhhhhheeeccCCcEEE
Confidence 99999875432110 011123345789999999999999988 55699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++|+--....+.-++|+.++ . ..+|+++.||+ .++..++++|.+|+.|.+..+|+.+++-
T Consensus 171 lDEPvAGMTd~Et~~taeLl~~la-~-~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 171 LDEPVAGMTDAETEKTAELLKSLA-G-KHSILVVEHDM-GFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred ecCccCCCcHHHHHHHHHHHHHHh-c-CceEEEEeccH-HHHHHhhheeEEEeccceeecccHHHhh
Confidence 999999999999999999999994 3 57999999997 5899999999999999999999998763
No 334
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-40 Score=284.94 Aligned_cols=199 Identities=28% Similarity=0.423 Sum_probs=169.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccC--CCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQH--DLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~--~~~~~~lT 76 (290)
.|||+++++||-.+|+|||||||||||++++|..+|. +|.+.+.|+.+.. ++|+.||||.-. ..+.+..+
T Consensus 48 ~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~ 124 (257)
T COG1119 48 GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRET 124 (257)
T ss_pred cccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccc
Confidence 4899999999999999999999999999999999994 8999999998753 478999999753 45666778
Q ss_pred HHHHHHHHHH--hcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 77 VYEHLYFMAL--LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 77 v~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
|+|-+.-+.. .-.......+...+++..+++.+|+.+.+++.+++ ||-||||||.|||||+.+|++||||
T Consensus 125 v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~--------LS~Ge~rrvLiaRALv~~P~LLiLD 196 (257)
T COG1119 125 VRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS--------LSQGEQRRVLIARALVKDPELLILD 196 (257)
T ss_pred cceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhh--------cCHhHHHHHHHHHHHhcCCCEEEec
Confidence 8887765432 11111112244556788999999999999999555 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQ-RKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~-~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
|||+|||...++.+.+.|.+++.. .+.++|+|||+. +++...+++++++++|++++.|.
T Consensus 197 EP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred CccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999543 378999999997 58999999999999999998773
No 335
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.3e-39 Score=348.05 Aligned_cols=195 Identities=22% Similarity=0.245 Sum_probs=166.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||.+||+|+||||||||+++|.|+++|. +|+|.|||.++.. .+|++++||||++.+|+. |+++
T Consensus 1303 ~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~ 1378 (1522)
T TIGR00957 1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRM 1378 (1522)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHH
Confidence 4899999999999999999999999999999999994 7999999999975 478999999999999986 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||..... . + .+.+.++++..++. +..|+.+++. ...||||||||++|||||+++|+|||
T Consensus 1379 NLdp~~~-~-----s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~----G~~LSgGQrQrl~LARALLr~~~ILi 1444 (1522)
T TIGR00957 1379 NLDPFSQ-Y-----S----DEEVWWALELAHLKTFVSALPDKLDHECAEG----GENLSVGQRQLVCLARALLRKTKILV 1444 (1522)
T ss_pred HcCcccC-C-----C----HHHHHHHHHHcCcHHHHhhCccCCCceecCC----CCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9973211 1 1 12244555555543 4567778774 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||||+||+.+...|.+.|++. . +++|+|+|+|++. ....||||++|++|++++.|++++++.
T Consensus 1445 LDEaTSalD~~Te~~Iq~~l~~~-~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1445 LDEATAAVDLETDNLIQSTIRTQ-F-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999986 3 4799999999973 456799999999999999999998763
No 336
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=265.01 Aligned_cols=186 Identities=26% Similarity=0.370 Sum_probs=162.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
|+|++|.+||++.|+|||||||||||..+.|.+.+....+|++++|+++++. ..++++|++||++.+||.++|.+|+.
T Consensus 20 ~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~ 99 (213)
T COG4136 20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLL 99 (213)
T ss_pred eeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceE
Confidence 7999999999999999999999999999999998866679999999999864 45788999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
|+... ..+...+++.+..++++.||....++. +..||||||-||++-|+|+..|+.++||||+|.||.
T Consensus 100 fAlp~----~~KG~aRr~~a~aAL~~~gL~g~f~~d--------P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ 167 (213)
T COG4136 100 FALPA----TLKGNARRNAANAALERSGLDGAFHQD--------PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167 (213)
T ss_pred EecCc----ccccHHHHhhHHHHHHHhccchhhhcC--------hhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHH
Confidence 97532 233345667788999999999999988 666999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
.-+.++.++...-.+..|..+|.||||.. ++. ...||+-|
T Consensus 168 ALR~qfR~wVFs~~r~agiPtv~VTHD~~-Dvp-agsrVie~ 207 (213)
T COG4136 168 ALRDQFRQWVFSEVRAAGIPTVQVTHDLQ-DVP-AGSRVIEM 207 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEecccc-cCC-CCCeeeee
Confidence 99999999988765677999999999964 443 44555544
No 337
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.8e-39 Score=318.44 Aligned_cols=188 Identities=22% Similarity=0.276 Sum_probs=153.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+++.++||+|++.+|.. |+++
T Consensus 359 ~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~ 434 (555)
T TIGR01194 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGP 434 (555)
T ss_pred ccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhc
Confidence 4799999999999999999999999999999999995 8999999999864 467889999999887764 7777
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+. + . ...+.+.++++.+++.+..+..+.. +.. ...||||||||++|||||+.+|++|||||||++
T Consensus 435 n~~-------~-~----~~~~~~~~~~~~~~l~~~~~~lp~g-~~t-~~~LSgGq~qRlalaRall~~~~ililDE~ts~ 500 (555)
T TIGR01194 435 DEG-------E-H----ASLDNAQQYLQRLEIADKVKIEDGG-FST-TTALSTGQQKRLALICAWLEDRPILLFDEWAAD 500 (555)
T ss_pred ccc-------c-c----hhHHHHHHHHHHcCCchhhcccccc-cCC-cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 731 0 1 1123466788888887665433111 000 245999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH-HHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEE
Q psy2520 160 LDSFSASKLIRMMR-ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 212 (290)
Q Consensus 160 LD~~~~~~i~~~l~-~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~ 212 (290)
||+.+...+.+.+. .+ +..|+|+|++||++. ..+.||+|++|++|+++..
T Consensus 501 LD~~~~~~i~~~l~~~~-~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 501 QDPAFKRFFYEELLPDL-KRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCHHHHHHHHHHHHHHH-HhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999988654 45 345899999999973 5678999999999998754
No 338
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.9e-39 Score=346.08 Aligned_cols=194 Identities=22% Similarity=0.355 Sum_probs=156.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEE-CCEecCc----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV-NGKPVEG----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i-~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++||++||+||||||||||+++|+|+++|+ +|+|++ +|.++.. .+|+.||||+|++.+|+ .||+
T Consensus 402 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~ 477 (1466)
T PTZ00265 402 KDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIK 477 (1466)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccHH
Confidence 4899999999999999999999999999999999994 899999 5677743 36788999999999887 4999
Q ss_pred HHHHHHHHhc-C--------ch------------------------------hhh---------HHHHHHHHHHHHHHcC
Q psy2520 79 EHLYFMALLK-L--------DR------------------------------RVK---------AYQRIALINSLLIELG 110 (290)
Q Consensus 79 e~l~~~~~~~-~--------~~------------------------------~~~---------~~~~~~~~~~~l~~~~ 110 (290)
|||.++.... . .. ... .....+.+.++++.++
T Consensus 478 eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~ 557 (1466)
T PTZ00265 478 NNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVL 557 (1466)
T ss_pred HHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhC
Confidence 9999863100 0 00 000 0011234566766666
Q ss_pred CCC-------ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q psy2520 111 LMN-------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183 (290)
Q Consensus 111 l~~-------~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 183 (290)
+.+ ..++.+++. ...||||||||++|||||+++|+||||||||++||+.++..+.+.|+++.++.|+|+
T Consensus 558 l~~~i~~lp~g~dT~vg~~----g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~Tv 633 (1466)
T PTZ00265 558 IHDFVSALPDKYETLVGSN----ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRIT 633 (1466)
T ss_pred cHHHHHhCccccCceeCCC----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEE
Confidence 543 345666654 567999999999999999999999999999999999999999999999854458999
Q ss_pred EEEeCCCcHHHHhhcCeEEEEeCC
Q psy2520 184 LCTIHQPSSELIDMFDKIILLADS 207 (290)
Q Consensus 184 i~~tH~~~~~~~~~~d~v~~l~~G 207 (290)
|++||++. . .+.||+|++|++|
T Consensus 634 IiIsHrls-~-i~~aD~Iivl~~g 655 (1466)
T PTZ00265 634 IIIAHRLS-T-IRYANTIFVLSNR 655 (1466)
T ss_pred EEEeCCHH-H-HHhCCEEEEEeCC
Confidence 99999974 4 4789999999986
No 339
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.7e-38 Score=265.92 Aligned_cols=202 Identities=23% Similarity=0.353 Sum_probs=176.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---c-ccccEEEEccCC--CCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---K-FRSACGFMYQHD--LFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~-~~~~ig~v~Q~~--~~~~~lTv 77 (290)
..|||+++.|+.+||+|.||||||||.|+|+|..+| ++|+|.+||+++.. . ..+.|-++||++ .+-|.+.+
T Consensus 30 ~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P---TsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred cceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC---CCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 368999999999999999999999999999999999 48999999999854 2 346799999996 46677777
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
..-+.+...+. ......++.+++.+.|..+|| .+.++-. +..||-||||||++||||+.+|+++|.||.
T Consensus 107 GqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan~~--------~~~la~~QKQRVaLARALIL~P~iIIaDeA 176 (267)
T COG4167 107 GQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHANYY--------PHMLAPGQKQRVALARALILRPKIIIADEA 176 (267)
T ss_pred hhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccccc--------hhhcCchhHHHHHHHHHHhcCCcEEEehhh
Confidence 77776655443 344556777888999999998 4566666 566999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.++||...+.++++++.++..+.|.+-|.|+.++ ..+..++|.|++|+.|++++.|++.+++
T Consensus 177 l~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred hhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCChhhhh
Confidence 9999999999999999999777899999999997 5789999999999999999999999765
No 340
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.6e-38 Score=268.51 Aligned_cols=152 Identities=30% Similarity=0.363 Sum_probs=127.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||+++.+ .+|+|.++|... ...+..++|++|
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~-~~~~~~~~~~~q---------------- 67 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLP-KFSRNKLIFIDQ---------------- 67 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCccc-ccccccEEEEhH----------------
Confidence 58999999999999999999999999999853 269999988632 222345788876
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC--CCeEEEeCCCCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTD--PALLLCDEPTTGL 160 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~--p~llllDEPtsgL 160 (290)
.++++.+++... .+++ +..||||||||++|||||+.+ |+++||||||++|
T Consensus 68 -------------------~~~l~~~~L~~~~~~~~--------~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 -------------------LQFLIDVGLGYLTLGQK--------LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred -------------------HHHHHHcCCCccccCCC--------cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 135677888653 6666 556999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
|+.++..+.+.|++++ +.|.|||++||++. ++ ..||++++|.+|..
T Consensus 121 D~~~~~~l~~~l~~~~-~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 121 HQQDINQLLEVIKGLI-DLGNTVILIEHNLD-VL-SSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEeCCHH-HH-HhCCEEEEECCCCC
Confidence 9999999999999984 46899999999973 54 68999999976543
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-38 Score=316.92 Aligned_cols=185 Identities=25% Similarity=0.360 Sum_probs=155.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC--CCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD--LFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~--~~~~~lTv~e~l 81 (290)
.|+||+|.+|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..+||++|+. .+.+..|+.+++
T Consensus 329 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~-------~~igy~~Q~~~~~l~~~~~~~~~~ 398 (638)
T PRK10636 329 DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG-------IKLGYFAQHQLEFLRADESPLQHL 398 (638)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC-------EEEEEecCcchhhCCccchHHHHH
Confidence 5899999999999999999999999999999999984 899999742 2599999974 355667887765
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.. .. . ......+.++++.+++. +..+++ +..|||||||||+||++|+.+|++|||||||++|
T Consensus 399 ~~---~~--~----~~~~~~~~~~L~~~~l~~~~~~~~--------~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~L 461 (638)
T PRK10636 399 AR---LA--P----QELEQKLRDYLGGFGFQGDKVTEE--------TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL 461 (638)
T ss_pred HH---hC--c----hhhHHHHHHHHHHcCCChhHhcCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 32 11 1 11124567899999996 467777 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 220 (290)
|+.++..+.++|+++ .| |||+||||+ .++..+||++++|++|+++ +.|+.++...
T Consensus 462 D~~~~~~l~~~L~~~---~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 462 DLDMRQALTEALIDF---EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CHHHHHHHHHHHHHc---CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999987 24 999999997 5788999999999999997 7899887643
No 342
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.9e-38 Score=339.82 Aligned_cols=193 Identities=24% Similarity=0.338 Sum_probs=165.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||.+||+|+||||||||+++|+|++++ +|+|+|||.++.. .+|+.++||||++.+|+. |+++
T Consensus 1236 ~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~----~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~ 1310 (1490)
T TIGR01271 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST----EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRK 1310 (1490)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCC----CcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHH
Confidence 489999999999999999999999999999999863 7999999999865 478999999999999985 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||..... .. .+.+.++++.+++. +..|+.+++.+ ..||||||||++|||||+++|+|||
T Consensus 1311 NLdp~~~------~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G----~nLSgGQrQrL~LARALLr~~~ILl 1376 (1490)
T TIGR01271 1311 NLDPYEQ------WS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG----YVLSNGHKQLMCLARSILSKAKILL 1376 (1490)
T ss_pred HhCcccC------CC----HHHHHHHHHHCCCHHHHHhCccccccccccCC----CcCCHHHHHHHHHHHHHhCCCCEEE
Confidence 9964321 11 23355677777663 34677777643 4599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...|.+.|++. . .++|||+++|++. ....||+|++|++|+++..|++.+++
T Consensus 1377 LDEaTS~lD~~Te~~I~~~L~~~-~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1377 LDEPSAHLDPVTLQIIRKTLKQS-F-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred EeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999987 3 4799999999973 45679999999999999999999876
No 343
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-37 Score=272.04 Aligned_cols=196 Identities=24% Similarity=0.315 Sum_probs=172.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEcc-CCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQ-HDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q-~~~~~~~lTv~e~l~ 82 (290)
.||||++++||.+||+|+||||||||||+|+|.++|+ +|+|.++|+- +++.. ...+-|.+|.+||+.
T Consensus 44 ~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt---~G~v~v~G~v---------~~li~lg~Gf~pelTGreNi~ 111 (249)
T COG1134 44 KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTGKV---------APLIELGAGFDPELTGRENIY 111 (249)
T ss_pred cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC---CceEEEcceE---------ehhhhcccCCCcccchHHHHH
Confidence 5899999999999999999999999999999999995 8999999964 22222 234567899999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+...+... +..+..+.++++.+..+|.++.+.+ ++.+|.||+-|+++|.|...+|++||+||-.+--|+
T Consensus 112 l~~~~~G~---~~~ei~~~~~eIieFaELG~fi~~P--------vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~ 180 (249)
T COG1134 112 LRGLILGL---TRKEIDEKVDEIIEFAELGDFIDQP--------VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180 (249)
T ss_pred HHHHHhCc---cHHHHHHHHHHHHHHHHHHHHhhCc--------hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH
Confidence 98766543 3455567788999999999999999 555999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 224 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 224 (290)
.-+++-.+.+.++ .+++.|||++|||+ ..+.++|||+++|++|++.+.|+++++++.+..
T Consensus 181 ~F~~K~~~rl~e~-~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 181 AFQEKCLERLNEL-VEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred HHHHHHHHHHHHH-HHcCCEEEEEECCH-HHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 9999999999999 44579999999997 589999999999999999999999999886654
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.6e-38 Score=315.15 Aligned_cols=187 Identities=26% Similarity=0.373 Sum_probs=156.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC-CCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD-LFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~-~~~~~lTv~e~l~ 82 (290)
.|+||+|.+|++++|+|||||||||||++|+|+++|+ +|+|.+ |.++ .+||++|+. .+++.+||.||+.
T Consensus 336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~~------~i~y~~q~~~~l~~~~tv~e~l~ 405 (635)
T PRK11147 336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTKL------EVAYFDQHRAELDPEKTVMDNLA 405 (635)
T ss_pred cCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCCc------EEEEEeCcccccCCCCCHHHHHH
Confidence 4799999999999999999999999999999999984 899998 5432 599999975 6889999999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
++..... .. .....+.++++.+++. +..+++ +..|||||||||+||++|+.+|++|||||||++||
T Consensus 406 ~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 406 EGKQEVM---VN--GRPRHVLGYLQDFLFHPKRAMTP--------VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472 (635)
T ss_pred hhccccc---cc--chHHHHHHHHHhcCCCHHHHhCh--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 7532110 01 0123467889999985 456777 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe-CCeEEE-EcCHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DSRTAF-IGSKDAA 218 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~-~G~i~~-~g~~~~~ 218 (290)
+.++..+.++|+++ +.|||+||||. .++..+||++++|+ +|++.. .|+.++-
T Consensus 473 ~~~~~~l~~~l~~~----~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 473 VETLELLEELLDSY----QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHHHHHHHHhC----CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999876 34999999996 57888999999998 899864 5776653
No 345
>KOG0056|consensus
Probab=100.00 E-value=7.2e-39 Score=300.41 Aligned_cols=203 Identities=26% Similarity=0.417 Sum_probs=173.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++.||+.+||+||||+||||++++|..+..- .+|.|.|||+++.. .+|+.||.||||..+|++ |+..
T Consensus 555 ~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv---~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~y 630 (790)
T KOG0056|consen 555 SDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV---NSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILY 630 (790)
T ss_pred ecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc---cCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeee
Confidence 589999999999999999999999999999999887 48999999999975 589999999999888876 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||.|+-.-..++++.+..+.+.+.+ +.+++.+..++++|+.+.+ |||||||||+|||+++.+|.+++|||.||+
T Consensus 631 NIryak~~AsneevyaAAkAA~IHd--rIl~fPegY~t~VGERGLk----LSGGEKQRVAiARtiLK~P~iIlLDEATSA 704 (790)
T KOG0056|consen 631 NIRYAKPSASNEEVYAAAKAAQIHD--RILQFPEGYNTRVGERGLK----LSGGEKQRVAIARTILKAPSIILLDEATSA 704 (790)
T ss_pred heeecCCCCChHHHHHHHHHhhHHH--HHhcCchhhhhhhhhcccc----cCCcchhhHHHHHHHhcCCcEEEEcchhhh
Confidence 9998743333333333333332332 2367889999999997664 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||..+.+.|...|.++++ |+|-|++.|.++ ..-.+|.|+++++|+|++.|..++++.
T Consensus 705 LDT~tER~IQaaL~rlca--~RTtIVvAHRLS--TivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 705 LDTNTERAIQAALARLCA--NRTTIVVAHRLS--TIVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred cCCccHHHHHHHHHHHhc--CCceEEEeeeeh--heecccEEEEEeCCeEeecCcHHHHHh
Confidence 999999999999999964 679999999974 345699999999999999999998763
No 346
>KOG0059|consensus
Probab=100.00 E-value=4.3e-38 Score=325.22 Aligned_cols=203 Identities=29% Similarity=0.401 Sum_probs=183.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.++|+.+++||+.+++|||||||||++++|+|..+|+ +|+++++|.++.. ..++.+||+||.+.+.+.+|.+
T Consensus 582 ~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 582 RGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGR 658 (885)
T ss_pred cceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccchhhhhhhcccCCchhhhhhhccHH
Confidence 5899999999999999999999999999999999994 8999999999864 2678899999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|++.+.+++++... ....+.++.+++.++|.+.++++++ .+|||+|+|+++|.||+.+|++++|||||+
T Consensus 659 EhL~~~arlrG~~~---~di~~~v~~ll~~~~L~~~~~~~~~--------~ySgG~kRkLs~aialig~p~vi~LDEPst 727 (885)
T KOG0059|consen 659 EHLEFYARLRGLPR---SDIGSAIEKLLRLVGLGPYANKQVR--------TYSGGNKRRLSFAIALIGDPSVILLDEPST 727 (885)
T ss_pred HHHHHHHHHcCCCh---hHHHHHHHHHHHHcCChhhhccchh--------hCCCcchhhHHHHHHHhcCCCEEEecCCCC
Confidence 99999998876432 2334457899999999999999954 499999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 222 (290)
|+||.+++.+++++.++. ++|+.||++||.+ +|+..+|||+.+|.+|++...|++.++...+
T Consensus 728 GmDP~arr~lW~ii~~~~-k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 728 GLDPKARRHLWDIIARLR-KNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred CCCHHHHHHHHHHHHHHH-hcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 999999999999999994 5566999999997 6899999999999999999999999887544
No 347
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.3e-37 Score=312.90 Aligned_cols=186 Identities=23% Similarity=0.313 Sum_probs=151.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||+|.+|++++|+|||||||||||++|+|+++|. +|+|.+++. ..+||++|++ ++.+++.++..+
T Consensus 526 ~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~-------~~igyv~Q~~--~~~l~~~~~~~~ 593 (718)
T PLN03073 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK-------VRMAVFSQHH--VDGLDLSSNPLL 593 (718)
T ss_pred eccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc-------eeEEEEeccc--cccCCcchhHHH
Confidence 4799999999999999999999999999999999994 799998752 3699999975 244566666443
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
......+. .. .+.+.++++.+++.. ..+++ +..|||||||||+||++|+.+|++|||||||++||+
T Consensus 594 ~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~~--------~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~ 660 (718)
T PLN03073 594 YMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQP--------MYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDL 660 (718)
T ss_pred HHHHhcCC-CC----HHHHHHHHHHCCCChHHhcCC--------ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 22111111 11 234678999999974 56777 456999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAAL 219 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 219 (290)
.++..+++.|.+. .| |||++|||+ .++..+||++++|++|+++ +.|++++..
T Consensus 661 ~s~~~l~~~L~~~---~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 661 DAVEALIQGLVLF---QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred HHHHHHHHHHHHc---CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999888765 24 999999997 5788899999999999998 778877543
No 348
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.1e-37 Score=263.96 Aligned_cols=139 Identities=27% Similarity=0.369 Sum_probs=122.6
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
++++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+ ++|++|+..
T Consensus 19 ~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~--------i~~~~q~~~---------------- 71 (177)
T cd03222 19 LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT--------PVYKPQYID---------------- 71 (177)
T ss_pred CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE--------EEEEcccCC----------------
Confidence 4799999999999999999999999999999994 7999999864 788887421
Q ss_pred hcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHH
Q psy2520 87 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 166 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 166 (290)
||||||||++|||+|+.+|+++||||||++||+.++.
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEE--cCHH
Q psy2520 167 KLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI--GSKD 216 (290)
Q Consensus 167 ~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~--g~~~ 216 (290)
.+.+.|++++++.+.|||++||++ .++..+||++++|+++-.++. |.|.
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999998544348999999997 577889999999998766544 5544
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-37 Score=310.19 Aligned_cols=191 Identities=27% Similarity=0.300 Sum_probs=151.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.||||.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.. .++|++|++..+ ..|+.+++.-
T Consensus 18 ~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~~-------~i~~~~q~~~~~-~~~~~~~v~~ 86 (638)
T PRK10636 18 DNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNW-------QLAWVNQETPAL-PQPALEYVID 86 (638)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCCC-------EEEEEecCCCCC-CCCHHHHHHH
Confidence 5899999999999999999999999999999999985 8999998742 389999864333 2466555432
Q ss_pred HHHhc-------------Cc----hhh-------hHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHH
Q psy2520 84 MALLK-------------LD----RRV-------KAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRL 138 (290)
Q Consensus 84 ~~~~~-------------~~----~~~-------~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv 138 (290)
..... .. ... .......++.++++.+|+. +..+++ +..|||||||||
T Consensus 87 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~--------~~~LSgGerqRv 158 (638)
T PRK10636 87 GDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP--------VSDFSGGWRMRL 158 (638)
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc--------hhhcCHHHHHHH
Confidence 10000 00 000 0011234678899999997 467877 445999999999
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHHH
Q psy2520 139 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDA 217 (290)
Q Consensus 139 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 217 (290)
+||++|+.+|++|||||||++||+.++..+.++|+++ +.|||+||||. .++..+||++++|++|+++ +.|+...
T Consensus 159 ~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 159 NLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDR-DFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCH-HHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 9999999999999999999999999999999999876 35999999997 5788999999999999996 5677764
Q ss_pred H
Q psy2520 218 A 218 (290)
Q Consensus 218 ~ 218 (290)
.
T Consensus 234 ~ 234 (638)
T PRK10636 234 F 234 (638)
T ss_pred H
Confidence 3
No 350
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.6e-37 Score=255.19 Aligned_cols=128 Identities=37% Similarity=0.508 Sum_probs=118.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||++++||+++|+||||||||||+++|+|+++|. +|+|+++|+ ..++|++|
T Consensus 17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~-------~~i~~~~~---------------- 70 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST-------VKIGYFEQ---------------- 70 (144)
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe-------EEEEEEcc----------------
Confidence 4799999999999999999999999999999999984 899999985 36899988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
||+||+||++|||||+.+|+++||||||++||+.
T Consensus 71 ----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~ 104 (144)
T cd03221 71 ----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104 (144)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
++..+.+.|+++ +.|+|++||++ .++..+||++++|++|+
T Consensus 105 ~~~~l~~~l~~~----~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 105 SIEALEEALKEY----PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHc----CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 999999999886 36999999997 57888999999999985
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.7e-37 Score=307.35 Aligned_cols=191 Identities=26% Similarity=0.313 Sum_probs=149.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.||||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.. .++|++|.+......+|.+++..
T Consensus 20 ~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~~-------~~~~l~q~~~~~~~~~v~~~~~~ 89 (635)
T PRK11147 20 DNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDL-------IVARLQQDPPRNVEGTVYDFVAE 89 (635)
T ss_pred eCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCCC-------EEEEeccCCCCCCCCCHHHHHHH
Confidence 4899999999999999999999999999999999984 7999998732 26788876543334566665431
Q ss_pred HHH--------h-------cCc---------hh----h---hHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCCh
Q psy2520 84 MAL--------L-------KLD---------RR----V---KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132 (290)
Q Consensus 84 ~~~--------~-------~~~---------~~----~---~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSg 132 (290)
+.. . ... .. . .......++.++++.+|+. .+++ +.+|||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~--------~~~LSg 159 (635)
T PRK11147 90 GIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAA--------LSSLSG 159 (635)
T ss_pred hhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCc--------hhhcCH
Confidence 100 0 000 00 0 0001234578899999996 3666 455999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-E
Q psy2520 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-F 211 (290)
Q Consensus 133 GqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~ 211 (290)
||||||+||++|+.+|+||||||||++||+.++..+.++|+++ . .|||+||||. .++..+||++++|++|+++ +
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~-~---~tvlivsHd~-~~l~~~~d~i~~L~~G~i~~~ 234 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF-Q---GSIIFISHDR-SFIRNMATRIVDLDRGKLVSY 234 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC-C---CEEEEEeCCH-HHHHHhcCeEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987 2 4999999997 5788899999999999997 4
Q ss_pred EcCHHHHH
Q psy2520 212 IGSKDAAL 219 (290)
Q Consensus 212 ~g~~~~~~ 219 (290)
.|+..+.+
T Consensus 235 ~g~~~~~~ 242 (635)
T PRK11147 235 PGNYDQYL 242 (635)
T ss_pred cCCHHHHH
Confidence 58877543
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.5e-37 Score=308.67 Aligned_cols=177 Identities=28% Similarity=0.324 Sum_probs=148.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEE-----------ECCEecCcc------ccccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR-----------VNGKPVEGK------FRSACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~-----------i~G~~~~~~------~~~~ig~v~ 66 (290)
++++ .+++|++++|+||||||||||||+|+|+++|+ +|+|. ++|+++... .+..+++.+
T Consensus 91 ~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~ 166 (590)
T PRK13409 91 YGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKP 166 (590)
T ss_pred ecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecc
Confidence 5677 79999999999999999999999999999995 79997 999887431 123466666
Q ss_pred cCCCCCCC---CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHH
Q psy2520 67 QHDLFSPS---LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 143 (290)
Q Consensus 67 Q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~a 143 (290)
|...++|. .||.|++.+. .....+.++++.++|.+..++. +.+|||||||||+||+|
T Consensus 167 q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~--------~~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 167 QYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRD--------ISELSGGELQRVAIAAA 226 (590)
T ss_pred cchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHH
Confidence 65433332 3999988631 1123567899999999888888 45599999999999999
Q ss_pred HHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCC
Q psy2520 144 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 207 (290)
Q Consensus 144 L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G 207 (290)
|+.+|++|||||||++||+.++..+.++|+++ .+ |.|||++||++ .++..++|++++|+++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l-~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIREL-AE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999 45 89999999997 5788999999999863
No 353
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-37 Score=257.90 Aligned_cols=170 Identities=29% Similarity=0.397 Sum_probs=149.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc---ccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~---~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.++||++.+||++.|.||||||||||||+|+|+..|. +|+|+++|.++... +++.+-|+-.++.+-+.+||+||
T Consensus 19 ~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~EN 95 (209)
T COG4133 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALEN 95 (209)
T ss_pred cceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHH
Confidence 4789999999999999999999999999999999995 89999999988652 45678888888889999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.|........ ....+.++++.+||....|.++ .+||-|||+||+|||-++..+++.||||||++|
T Consensus 96 L~F~~~~~~~~------~~~~i~~Al~~vgL~g~~dlp~--------~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taL 161 (209)
T COG4133 96 LHFWQRFHGSG------NAATIWEALAQVGLAGLEDLPV--------GQLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161 (209)
T ss_pred HHHHHHHhCCC------chhhHHHHHHHcCcccccccch--------hhcchhHHHHHHHHHHHcCCCCceeecCccccc
Confidence 99988765421 1234678999999999999994 459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
|......+-.++..-+ .+|-.||.+||++.
T Consensus 162 Dk~g~a~l~~l~~~H~-~~GGiVllttHq~l 191 (209)
T COG4133 162 DKEGVALLTALMAAHA-AQGGIVLLTTHQPL 191 (209)
T ss_pred CHHHHHHHHHHHHHHh-cCCCEEEEecCCcc
Confidence 9999999999999874 45778999999974
No 354
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=5.8e-37 Score=308.67 Aligned_cols=183 Identities=21% Similarity=0.272 Sum_probs=145.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.+++ ++.++|++|++.+++. |++||+.+
T Consensus 469 ~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~ 537 (659)
T TIGR00954 469 ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQIIY 537 (659)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHhc
Confidence 4799999999999999999999999999999999884 79998864 4579999999988876 99999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcC-CCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS-ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~-~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+........ .....+.+.++++.+++.+..+++.|-+. ......||||||||++|||||+.+|+++||||||++||+
T Consensus 538 ~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~ 615 (659)
T TIGR00954 538 PDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615 (659)
T ss_pred CCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 532110000 00112346788889998776554321000 000356999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
.++..+.+.+++. |.|+|++||++. ..+.||++++|+
T Consensus 616 ~~~~~l~~~l~~~----~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 616 DVEGYMYRLCREF----GITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHHHHHHHHHc----CCEEEEEeCchH--HHHhCCEEEEEe
Confidence 9999999988653 789999999973 468999999997
No 355
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=7.2e-36 Score=322.31 Aligned_cols=192 Identities=26% Similarity=0.398 Sum_probs=152.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++| .|+|++|++.+++. ||+||+.|
T Consensus 443 ~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eNI~~ 509 (1490)
T TIGR01271 443 KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG---------RISFSPQTSWIMPG-TIKDNIIF 509 (1490)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC---------EEEEEeCCCccCCc-cHHHHHHh
Confidence 4899999999999999999999999999999999994 89999988 39999999988875 99999998
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+.... ........+...+.+.++.+ .+...+.+|+. ...|||||||||+||||++.+|+++||||||++||+.
T Consensus 510 g~~~~-~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~----g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 510 GLSYD-EYRYTSVIKACQLEEDIALF--PEKDKTVLGEG----GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred ccccc-hHHHHHHHHHHhHHHHHHhc--cccccccccCc----CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 74321 00000000011112223222 22234455553 4569999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 164 SASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 164 ~~~~i~~~-l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
++.++++. +..+ . +|+|+|++||++. .+ ..||++++|++|+++..|+++++.
T Consensus 583 ~~~~i~~~~l~~~-~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 583 TEKEIFESCLCKL-M-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHH-h-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999974 6666 3 3899999999974 44 569999999999999999998875
No 356
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-36 Score=325.80 Aligned_cols=186 Identities=23% Similarity=0.364 Sum_probs=153.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|+.++|+||+|||||||+++|+|.++|. +|.+. .+++.|+||+|++.+++. |++|||.|
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~--------~~~~~Iayv~Q~p~Lf~g-TIreNI~f 701 (1495)
T PLN03232 634 SDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV--------VIRGSVAYVPQVSWIFNA-TVRENILF 701 (1495)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE--------EecCcEEEEcCccccccc-cHHHHhhc
Confidence 4899999999999999999999999999999999984 67663 246789999999998864 99999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+... .. +++.++++..+ +.+..++.+|+.+. .||||||||++||||++.+|+|+|||||
T Consensus 702 g~~~------~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~----~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 702 GSDF------ES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGV----NISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred CCcc------CH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCc----ccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 7421 11 12233333333 34556788888644 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~-l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+||+.+..++++. ++.. . .++|+|++||++. ....||+|++|++|+++..|+.+++.
T Consensus 768 tSaLD~~t~~~I~~~~l~~~-l-~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 768 LSALDAHVAHQVFDSCMKDE-L-KGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred ccccCHHHHHHHHHHHhhhh-h-cCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999988765 5544 2 4799999999973 56789999999999999999998875
No 357
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.6e-36 Score=324.99 Aligned_cols=185 Identities=23% Similarity=0.379 Sum_probs=154.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCc-cEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIID-GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~-G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+||++++|+.++|+||+|||||||+++|.|.++| .+ |+|.+ +..|+||+|++.+++ .|++|||.
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~---~~GG~I~l---------~~~Iayv~Q~p~Lfn-gTIreNI~ 700 (1622)
T PLN03130 634 SNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP---RSDASVVI---------RGTVAYVPQVSWIFN-ATVRDNIL 700 (1622)
T ss_pred eceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc---CCCceEEE---------cCeEEEEcCccccCC-CCHHHHHh
Confidence 589999999999999999999999999999999998 48 89985 456999999999886 49999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|+... . .+++.++++..+| .+..++.+|+.+ ..|||||||||+||||++.+|+++||||
T Consensus 701 fg~~~------d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G----~~LSGGQKQRIaLARAly~~~~IlLLDE 766 (1622)
T PLN03130 701 FGSPF------D----PERYERAIDVTALQHDLDLLPGGDLTEIGERG----VNISGGQKQRVSMARAVYSNSDVYIFDD 766 (1622)
T ss_pred CCCcc------c----HHHHHHHHHHhCcHHHHHhCCCcccccccCCC----CCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 97431 1 1223344444443 445678888864 4599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~-~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+||+.+..++++ .++.+ . +|+|+|++||++ .....||+|++|++|+++..|+.+++.
T Consensus 767 ptSALD~~~~~~I~~~~l~~~-l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 767 PLSALDAHVGRQVFDKCIKDE-L-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred CccccCHHHHHHHHHHHhhHH-h-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999988864 56655 2 479999999997 356789999999999999999998875
No 358
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=251.38 Aligned_cols=197 Identities=26% Similarity=0.346 Sum_probs=157.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe---cC-----c-----cccccEEEEccCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP---VE-----G-----KFRSACGFMYQHDL 70 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~---~~-----~-----~~~~~ig~v~Q~~~ 70 (290)
.||||++.|||+++|+|.|||||||||+||++.+.|+ .|+|.|.-.+ .. + -.|...|||.|+|.
T Consensus 23 ~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~ 99 (258)
T COG4107 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR 99 (258)
T ss_pred cccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence 5899999999999999999999999999999999995 7999886532 21 1 14567999999863
Q ss_pred --CCCC----CCHHHHHHH-HHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHH
Q psy2520 71 --FSPS----LTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFAT 142 (290)
Q Consensus 71 --~~~~----lTv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~ 142 (290)
+-.. -.+-|-++- +.+-+ ...++.+.+|++.+.+.. ..|.. +..+||||+||+.|||
T Consensus 100 DGLRm~VSAG~NiGERlma~G~RHY-------G~iR~~a~~WL~~VEI~~~RiDD~--------PrtFSGGMqQRLQiAR 164 (258)
T COG4107 100 DGLRMQVSAGGNIGERLMAIGARHY-------GNIRAEAQDWLEEVEIDLDRIDDL--------PRTFSGGMQQRLQIAR 164 (258)
T ss_pred ccceeeeccCCccchhHHhhhhhhh-------hhHHHHHHHHHHhcccCcccccCc--------ccccchHHHHHHHHHH
Confidence 2221 233333322 22111 112345678999999854 34555 6779999999999999
Q ss_pred HHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 143 ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 143 aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.|+..|+++++||||.|||...+.+++++++.+..+-|..++++|||+ ..+.-++||.++|++|+++..|-++.++
T Consensus 165 nLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred HhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeecCCCEeccccccccc
Confidence 999999999999999999999999999999999888899999999997 4555579999999999999999887543
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-36 Score=249.38 Aligned_cols=138 Identities=38% Similarity=0.655 Sum_probs=124.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||++.+|++++|+||||||||||+++|+|+++|. +|+|+++|.++.. .+++.++|++|
T Consensus 16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------ 80 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQ------------ 80 (157)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHhceEEEee------------
Confidence 4789999999999999999999999999999999884 7999999988653 23466888887
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||+||+||++||++++.+|+++||||||++
T Consensus 81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 599999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
||+.++..+.+.|++++. .+.|++++||++ .++..+||++++|++|+
T Consensus 111 lD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 111 LDPASRERLLELLRELAE-EGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 999999999999999854 478999999997 57888899999999874
No 360
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.5e-36 Score=322.90 Aligned_cols=193 Identities=26% Similarity=0.431 Sum_probs=153.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++| .++||+|++.+++ .||+||+.|
T Consensus 655 ~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g---------~i~yv~Q~~~l~~-~Ti~eNI~~ 721 (1522)
T TIGR00957 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG---------SVAYVPQQAWIQN-DSLRENILF 721 (1522)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC---------EEEEEcCCccccC-CcHHHHhhc
Confidence 4899999999999999999999999999999999994 89999987 4999999988764 699999998
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCC-CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+... .. ........+..+.+.++. .+..++.+|+. ..+||||||||++||||++.+|+++||||||++||+
T Consensus 722 g~~~--~~--~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~----g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 722 GKAL--NE--KYYQQVLEACALLPDLEILPSGDRTEIGEK----GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred CCcc--CH--HHHHHHHHHhCCHHHHHhcCCCCCceecCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 6421 11 111111111122333333 23345566664 456999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 163 FSASKLIRMMRELT-SQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 163 ~~~~~i~~~l~~l~-~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.+...+++.+.+.. ..+++|+|++||++. . ...||+|++|++|+++..|+++++.
T Consensus 794 ~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~-~-l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLKNKTRILVTHGIS-Y-LPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred HHHHHHHHHHhhhhhhhcCCEEEEEeCChh-h-hhhCCEEEEecCCeEEeeCCHHHHH
Confidence 99999999987531 124789999999973 4 4569999999999999999998875
No 361
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=281.56 Aligned_cols=203 Identities=30% Similarity=0.427 Sum_probs=170.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||++.+|+.+||+||+|+||||++++|..++.++ +|.|.++|+++.. .+|+.||.|||+..+|.+ |.+.
T Consensus 280 ~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~y 355 (497)
T COG5265 280 NGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAY 355 (497)
T ss_pred cCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHH
Confidence 4799999999999999999999999999999999985 8999999999864 478999999999888876 8999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.|+..-....+.........+...++ .+.+..++.||+.+.. |||||||||+|||+++.+|++|+|||.||+
T Consensus 356 ni~ygr~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerglk----lSggekqrvaiar~ilk~p~il~~deatsa 429 (497)
T COG5265 356 NIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLK----LSGGEKQRVAIARTILKNPPILILDEATSA 429 (497)
T ss_pred HHhccCccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchheee----ccCchHHHHHHHHHHhcCCCEEEEehhhhH
Confidence 9998754332222222222233334443 3577889999987654 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||..+.+.|...|++. . .|+|.+++.|.++ - .--+|.|++|++|+|++.|+.++++.
T Consensus 430 ldt~te~~iq~~l~~~-~-~~rttlviahrls-t-i~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 430 LDTHTEQAIQAALREV-S-AGRTTLVIAHRLS-T-IIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred hhhhHHHHHHHHHHHH-h-CCCeEEEEeehhh-h-ccCCceEEEeeCCEEEecCcHHHHHH
Confidence 9999999999999998 4 4889999999974 3 34589999999999999999997764
No 362
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.5e-35 Score=318.65 Aligned_cols=190 Identities=25% Similarity=0.394 Sum_probs=149.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.+. +.|||++|++.++ +.||+||+.|
T Consensus 677 ~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~---------~~i~yv~Q~~~l~-~~Tv~enI~~ 743 (1560)
T PTZ00243 677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE---------RSIAYVPQQAWIM-NATVRGNILF 743 (1560)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC---------CeEEEEeCCCccC-CCcHHHHHHc
Confidence 3889999999999999999999999999999999984 7999863 4699999998876 4699999998
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
+.... ........+...+.+.++.+ |+....+++ ...|||||||||+|||||+.+|+++||||||++||
T Consensus 744 ~~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~--------g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD 814 (1560)
T PTZ00243 744 FDEED-AARLADAVRVSQLEADLAQLGGGLETEIGEK--------GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814 (1560)
T ss_pred CChhh-HHHHHHHHHHhhhHHHHHHhhccchHHhcCC--------CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 53210 00011111111233445544 444333333 45699999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMM-RELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l-~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+++.+ ... . .|+|+|++||++. . ...||+|++|++|++++.|+.++++
T Consensus 815 ~~~~~~i~~~~~~~~-~-~~~TvIlvTH~~~-~-~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 815 AHVGERVVEECFLGA-L-AGKTRVLATHQVH-V-VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHHHHHHHh-h-CCCEEEEEeCCHH-H-HHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999988754 333 2 4899999999973 4 4789999999999999999998865
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.6e-35 Score=286.47 Aligned_cols=191 Identities=27% Similarity=0.337 Sum_probs=157.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+|+.+.+|+.+||||+||||||||||+|+|...|+ +|+|...+. ..++|++|++.+.+..||.+.+..
T Consensus 20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~-------~~v~~l~Q~~~~~~~~tv~~~v~~ 89 (530)
T COG0488 20 ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG-------LRVGYLSQEPPLDPEKTVLDYVIE 89 (530)
T ss_pred cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC-------ceEEEeCCCCCcCCCccHHHHHHh
Confidence 4899999999999999999999999999999999985 799987542 259999999999999999998876
Q ss_pred HHHhcC--chhhhH-------------------------HHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHH
Q psy2520 84 MALLKL--DRRVKA-------------------------YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 136 (290)
Q Consensus 84 ~~~~~~--~~~~~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrq 136 (290)
+..-.. ...... .....++..++..+|+... +++ +++||||||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~--------~~~LSGG~r~ 160 (530)
T COG0488 90 GFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRP--------VSSLSGGWRR 160 (530)
T ss_pred hhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCc--------hhhcCHHHHH
Confidence 532100 000000 1112456788888998877 777 4559999999
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCH
Q psy2520 137 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSK 215 (290)
Q Consensus 137 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~ 215 (290)
||+||++|+.+|++|||||||+.||..+...+.+.|++. .| |+|+|||| ..++-+.|++|+-++.|++. |.|..
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHD-RYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCC-HHHHHHHhhheEEecCCceeEecCCH
Confidence 999999999999999999999999999999999999876 36 99999999 57899999999999999886 55766
Q ss_pred HHH
Q psy2520 216 DAA 218 (290)
Q Consensus 216 ~~~ 218 (290)
+..
T Consensus 236 ~~~ 238 (530)
T COG0488 236 SSY 238 (530)
T ss_pred HHH
Confidence 543
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.4e-34 Score=252.22 Aligned_cols=185 Identities=24% Similarity=0.321 Sum_probs=130.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHH-HHHHcCCCCCCCCccEEEEC-----------C-EecCc--ccc-ccEEEEcc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLL-AALSQRLPDDCIIDGDIRVN-----------G-KPVEG--KFR-SACGFMYQ 67 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl-~~l~G~~~~~~~~~G~I~i~-----------G-~~~~~--~~~-~~ig~v~Q 67 (290)
.+|||++++||+++|+||||||||||+ ..+.. +|++.+. | -.... ..+ ...++..|
T Consensus 12 ~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T cd03270 12 KNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAID 83 (226)
T ss_pred ccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCCceEEec
Confidence 589999999999999999999999995 44431 1222110 0 00000 111 23444445
Q ss_pred CCC--CCCCCCHHH---HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHH
Q psy2520 68 HDL--FSPSLTVYE---HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFA 141 (290)
Q Consensus 68 ~~~--~~~~lTv~e---~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia 141 (290)
++. +.+..+|.. ...+...+. ....... ..++++.+++.+ ..+++ +.+|||||||||+||
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~-~~~~l~~~~l~~~~~~~~--------~~~LSgG~~qrv~la 149 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRE-RLGFLVDVGLGYLTLSRS--------APTLSGGEAQRIRLA 149 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHH-HHHHHHHCCCCcccccCc--------cCcCCHHHHHHHHHH
Confidence 432 234445542 222211111 1111112 246889999976 46777 556999999999999
Q ss_pred HHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEc
Q psy2520 142 TELLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIG 213 (290)
Q Consensus 142 ~aL~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g 213 (290)
++|+.+| ++|||||||+|||+.++..+.+.|++++ +.|.|||++||++ .++ .+||++++| ++|+|+++|
T Consensus 150 ral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~-~~g~tii~itH~~-~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 150 TQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLR-DLGNTVLVVEHDE-DTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEEeCH-HHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 9999998 5999999999999999999999999994 4589999999997 354 699999999 999999876
No 365
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.2e-34 Score=235.75 Aligned_cols=132 Identities=41% Similarity=0.623 Sum_probs=115.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|||+++++|++++|+||||||||||+++|+|..+| .+|+|.++|+++.. ..++.++|++|++.+++.+||.|
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence 479999999999999999999999999999999988 48999999999865 36788999999999999999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
| .....+.++++.+++.+..++.++.. +..||+||||||+||+||+.+|+++||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~----~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQR----ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSC----GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------cccccccccccccccccccccccccc----cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 11233577888888887777776442 35699999999999999999999999999996
No 366
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.1e-33 Score=252.76 Aligned_cols=192 Identities=28% Similarity=0.353 Sum_probs=148.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHH-----cCC-----CCC--C------CCccEEEECCEecCccc-------
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALS-----QRL-----PDD--C------IIDGDIRVNGKPVEGKF------- 58 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~-----G~~-----~~~--~------~~~G~I~i~G~~~~~~~------- 58 (290)
.|||..|+.|.+++|+|+||||||||++.+. ..+ .|. . ...--|.++..++....
T Consensus 12 ~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ty 91 (261)
T cd03271 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPATY 91 (261)
T ss_pred CCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHHH
Confidence 4789999999999999999999999998552 110 010 0 01124777877774311
Q ss_pred -------cc----------------cEEEEccCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-c
Q psy2520 59 -------RS----------------ACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-S 114 (290)
Q Consensus 59 -------~~----------------~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~ 114 (290)
|+ .+.|..++...+..+||.|++.|+...+ ...++.++++.+||.. .
T Consensus 92 ~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~~l~ 162 (261)
T cd03271 92 TGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLGYIK 162 (261)
T ss_pred HHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCchhh
Confidence 10 1445555555567899999999876432 1234567999999987 4
Q ss_pred cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTD---PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 115 ~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
.++. +..|||||+||++||++|+.+ |+++||||||+|||+..+..+++.|+++. +.|.|||+++|++
T Consensus 163 l~~~--------~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~-~~g~tvIiitH~~- 232 (261)
T cd03271 163 LGQP--------ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLV-DKGNTVVVIEHNL- 232 (261)
T ss_pred hcCc--------cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-
Confidence 6776 456999999999999999996 79999999999999999999999999994 5589999999997
Q ss_pred HHHHhhcCeEEEE------eCCeEEEEcCH
Q psy2520 192 SELIDMFDKIILL------ADSRTAFIGSK 215 (290)
Q Consensus 192 ~~~~~~~d~v~~l------~~G~i~~~g~~ 215 (290)
..+ ..||+++.| ++|++++.|++
T Consensus 233 ~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 344 689999999 89999999874
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.3e-34 Score=291.06 Aligned_cols=200 Identities=24% Similarity=0.264 Sum_probs=142.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------------------cccccEEEE
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------------------KFRSACGFM 65 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------------------~~~~~ig~v 65 (290)
.|+||++.+|+++||+|||||||||||++|+|........+|+|.+.++.+.. .++..++|+
T Consensus 194 ~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~ 273 (718)
T PLN03073 194 VDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLV 273 (718)
T ss_pred ECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999998641101136888765543210 012336677
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcC-ch---------------hhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCC
Q psy2520 66 YQHDLFSPSLTVYEHLYFMALLKL-DR---------------RVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKV 128 (290)
Q Consensus 66 ~Q~~~~~~~lTv~e~l~~~~~~~~-~~---------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~ 128 (290)
+|++.+... ++.++... ..... .. .........++.+++..+|+. +..+++ +.
T Consensus 274 ~q~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~--------~~ 343 (718)
T PLN03073 274 AQQRELEFE-TETGKGKG-ANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKA--------TK 343 (718)
T ss_pred HHHHHhhhc-cccccccc-ccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCc--------hh
Confidence 775432211 11111100 00000 00 000112234567788889986 445666 45
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 129 ~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||. .++..+||++++|++|+
T Consensus 344 ~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~-~~l~~~~d~i~~l~~g~ 418 (718)
T PLN03073 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHAR-EFLNTVVTDILHLHGQK 418 (718)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCH-HHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999886 57999999996 57888999999999999
Q ss_pred EE-EEcCHHHH
Q psy2520 209 TA-FIGSKDAA 218 (290)
Q Consensus 209 i~-~~g~~~~~ 218 (290)
+. +.|+.+..
T Consensus 419 i~~~~g~~~~~ 429 (718)
T PLN03073 419 LVTYKGDYDTF 429 (718)
T ss_pred EEEeCCCHHHH
Confidence 96 67776643
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=6.9e-34 Score=246.57 Aligned_cols=166 Identities=18% Similarity=0.262 Sum_probs=130.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC------CCCccEEEECCEecCc-cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD------CIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~------~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lT 76 (290)
.++++++.+| +++|+||||||||||+++|+|++++. ....|++.++|++... ..++.++|+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 3689999999 99999999999999999999997653 1124578888877643 2356799999987655
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH----hCCCeEE
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL----TDPALLL 152 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~----~~p~lll 152 (290)
|.. . . .+++.++++. .+..++. +..||||||||++||++|+ .+|+++|
T Consensus 89 ------~~~--~-----~----~~~~~~~l~~---~~~~~~~--------~~~LS~G~kqrl~la~~l~~~~~~~~~ill 140 (197)
T cd03278 89 ------YSI--I-----S----QGDVSEIIEA---PGKKVQR--------LSLLSGGEKALTALALLFAIFRVRPSPFCV 140 (197)
T ss_pred ------eeE--E-----e----hhhHHHHHhC---CCccccc--------hhhcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 110 0 0 1234556655 4455666 4569999999999999997 4669999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
|||||++||+..+..+++.|+++ ++ +.|||++||++ .. ..+||+++.|..
T Consensus 141 lDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiIiitH~~-~~-~~~~d~v~~~~~ 190 (197)
T cd03278 141 LDEVDAALDDANVERFARLLKEF-SK-ETQFIVITHRK-GT-MEAADRLYGVTM 190 (197)
T ss_pred EeCCcccCCHHHHHHHHHHHHHh-cc-CCEEEEEECCH-HH-HhhcceEEEEEe
Confidence 99999999999999999999998 44 68999999997 34 578999999874
No 369
>KOG0054|consensus
Probab=100.00 E-value=6.8e-33 Score=289.88 Aligned_cols=188 Identities=28% Similarity=0.425 Sum_probs=158.2
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
-.||||+|++|+.+||+||-|||||+||.+|.|-++. .+|+|.++|. ++||+|.+.+++ .||+|||.
T Consensus 537 L~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs---------iaYv~Q~pWI~n-gTvreNIL 603 (1381)
T KOG0054|consen 537 LKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS---------VAYVPQQPWIQN-GTVRENIL 603 (1381)
T ss_pred ccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe---------EEEeccccHhhC-CcHHHhhh
Confidence 3689999999999999999999999999999999987 5899999885 999999998876 49999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|+..+. .++.+++++...| ...-.+.||+.++ +||||||||++||||+.++++++|||.
T Consensus 604 FG~~~d----------~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi----nLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 604 FGSPYD----------EERYDKVIKACALKKDLEILPFGDLTEIGERGI----NLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred cCcccc----------HHHHHHHHHHccCHhHHhhcCCCCcceecCCcc----CCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 986431 1223344444433 3445677898765 499999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+|++|.....++++-.-.- .-+++|+|++||+. +..+.||.|++|++|+|...|+.+|+.+
T Consensus 670 plSAVDahvg~~if~~ci~~-~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 670 PLSAVDAHVGKHIFEECIRG-LLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred cchhhhHhhhHHHHHHHHHh-hhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 99999999999988655443 23579999999985 5678999999999999999999999874
No 370
>KOG0054|consensus
Probab=100.00 E-value=1.4e-32 Score=287.64 Aligned_cols=202 Identities=23% Similarity=0.306 Sum_probs=164.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|+|||.+||+|..|||||||+++|..+..|. +|+|.|||.++.. .+|++++.+||+|.+|.. ||+.
T Consensus 1157 k~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~ 1232 (1381)
T KOG0054|consen 1157 KGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRF 1232 (1381)
T ss_pred cCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-cccc
Confidence 5899999999999999999999999999999999984 7999999999976 589999999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||.=... +....+.+.-......+.++ .+....|..+.+.+ .++|-||||.++|||||+++++||+|||.|++
T Consensus 1233 NLDPf~e-~sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~egG----~N~SvGQRQLlCLARALLr~skILvLDEATAs 1305 (1381)
T KOG0054|consen 1233 NLDPFDE-YSDDEIWEALERCQLKDVVS--SLPGGLDSEVSEGG----ENFSVGQRQLLCLARALLRKSKILVLDEATAS 1305 (1381)
T ss_pred ccCcccc-cCHHHHHHHHHHhChHHHHh--hCCcCCCceecCCC----ccCChHHHHHHHHHHHHhccCCEEEEeccccc
Confidence 9864322 11111111111112223333 33445677777753 45999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|+.+-..|.+.|++- -.++|||.+.|+++ -+. -+|||+||++|+++++|+|.++++
T Consensus 1306 VD~~TD~lIQ~tIR~~--F~dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1306 VDPETDALIQKTIREE--FKDCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred CChHHHHHHHHHHHHH--hcCCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 9999999999999985 34799999999986 343 489999999999999999997763
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.1e-34 Score=238.00 Aligned_cols=194 Identities=27% Similarity=0.408 Sum_probs=166.2
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.+|+.+..||++-+||||||||||||-.++|+.+. +|+|.++|.++.. ++.+.-+|+.|+..-...|.|+.+
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 46889999999999999999999999999999875 7999999999864 466778899987655556789998
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh-------CCCeEEE
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT-------DPALLLC 153 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~-------~p~llll 153 (290)
+.+. .+ ...+...+.++...++|.+...+. +..|||||.|||-+|...++ ..++|||
T Consensus 93 L~L~----qP----~~~~a~~i~~i~~~L~l~DKL~Rs--------~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 93 LTLH----QP----DKTRTELLNDVAGALALDDKLGRS--------TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred hhhc----Cc----hHHHHHHHHHHHhhhcccchhhhh--------hhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 8753 22 234455678888899999888887 55699999999999988763 3479999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||.++||...+..+-.+|.+++ ..|.+||+++||++ ...+.+|++++++.|++...|..++++.
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c-~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALC-QQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHH-hCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 99999999999999999999996 46999999999985 6889999999999999999999998763
No 372
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.98 E-value=1.4e-31 Score=256.60 Aligned_cols=199 Identities=25% Similarity=0.425 Sum_probs=168.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccC---CCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQH---DLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~---~~~~~~l 75 (290)
.|+||++++||+++|.|-=|||+|-|+++|.|..++ .+|+|.++|+++.. .++..++|||.| ..++..+
T Consensus 276 ~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 276 RDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred eCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 589999999999999999999999999999998776 37999999998853 356789999987 5788999
Q ss_pred CHHHHHHHHHHhcCc-h-hhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 76 TVYEHLYFMALLKLD-R-RVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
+|.+|+.+....+.. . ........+.++++.+.+++. ...+.. +..||||.||||.|||.|+.+|++||
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~--------v~~LSGGNQQKVvlarwL~~~p~vLi 424 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP--------IGTLSGGNQQKVVLARWLATDPKVLI 424 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch--------hhcCCchhhhhHHHHHHHhcCCCEEE
Confidence 999999987322111 1 234444456678899999884 344555 45599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 215 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~ 215 (290)
|||||.|+|.-++.+|.++|++++ ++|++||++|.++ .|+..+||||++|.+|+++..-+.
T Consensus 425 lDEPTRGIDVGAK~eIy~li~~lA-~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 425 LDEPTRGIDVGAKAEIYRLIRELA-AEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred ECCCCcCcccchHHHHHHHHHHHH-HCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEecc
Confidence 999999999999999999999995 4599999999997 589999999999999999875433
No 373
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.9e-32 Score=227.07 Aligned_cols=187 Identities=26% Similarity=0.356 Sum_probs=152.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe--cC--c-------c-ccccEEEEccCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP--VE--G-------K-FRSACGFMYQHDLF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~--~~--~-------~-~~~~ig~v~Q~~~~ 71 (290)
.|+||+++.||++++=|||||||||||++|-|.+.|+ +|+|++.-+. +. . . .++.||||.|--..
T Consensus 28 ~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv 104 (235)
T COG4778 28 RNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV 104 (235)
T ss_pred eceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence 4899999999999999999999999999999999995 8999985432 21 1 1 34679999998777
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
.|.....|-++-.+.-+. ...+....++..++.++++.+. +.-. +..+||||||||.|||.++.+=+|
T Consensus 105 iPRV~aLdVvaePll~~g---v~~~~a~~~a~~Ll~rLnlperLW~La--------PaTFSGGEqQRVNIaRgfivd~pI 173 (235)
T COG4778 105 IPRVSALDVVAEPLLARG---VPREVARAKAADLLTRLNLPERLWSLA--------PATFSGGEQQRVNIARGFIVDYPI 173 (235)
T ss_pred ccCcchHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCCHHHhcCC--------CcccCCchheehhhhhhhhccCce
Confidence 787777776665443332 2344455667899999999664 4444 566999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
|||||||++||..++.-++++|.+- +.+|..+|=+-|| .+.-...|||++-|..
T Consensus 174 LLLDEPTasLDa~Nr~vVveli~e~-Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 174 LLLDEPTASLDATNRAVVVELIREA-KARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred EEecCCcccccccchHHHHHHHHHH-HhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999997 6679999999999 3444558999998864
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.98 E-value=2e-31 Score=260.26 Aligned_cols=182 Identities=33% Similarity=0.372 Sum_probs=151.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC-CCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD-LFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~-~~~~~lTv~e~l~ 82 (290)
.++||.+.+|+.+||+||||||||||||+|+|...|. +|+|.+.-. -.+||..|+. .+.+..|+.|++.
T Consensus 339 ~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~-------v~igyf~Q~~~~l~~~~t~~d~l~ 408 (530)
T COG0488 339 KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET-------VKIGYFDQHRDELDPDKTVLEELS 408 (530)
T ss_pred cCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc-------eEEEEEEehhhhcCccCcHHHHHH
Confidence 4899999999999999999999999999999999884 799987432 3599999985 4457789999886
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
-...- . . ...+...|..|++.. ...++ +..||||||.|+.+|+.++.+|.+|||||||+.||
T Consensus 409 ~~~~~----~-~----e~~~r~~L~~f~F~~~~~~~~--------v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLD 471 (530)
T COG0488 409 EGFPD----G-D----EQEVRAYLGRFGFTGEDQEKP--------VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471 (530)
T ss_pred hhCcc----c-c----HHHHHHHHHHcCCChHHHhCc--------hhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCC
Confidence 43211 0 0 244678999999954 45666 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE-EcCHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF-IGSKDAA 218 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 218 (290)
..+...+.+.|..+ . | |||+||||. .++.++|++++.+.+ ++.. .|..++.
T Consensus 472 i~s~~aLe~aL~~f-~--G-tvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 472 IESLEALEEALLDF-E--G-TVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHHHHHHHHHHhC-C--C-eEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 99999999999987 2 3 999999995 689999999999998 5544 4777643
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=7.8e-32 Score=241.78 Aligned_cols=181 Identities=16% Similarity=0.169 Sum_probs=137.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE-ecCc------cccccEEEEccCC---------CCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-PVEG------KFRSACGFMYQHD---------LFS 72 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~-~~~~------~~~~~ig~v~Q~~---------~~~ 72 (290)
.+.+| +++|+||||||||||+++|++++.+. ..|++.+.|. ++-. ..+..|+++||++ .+.
T Consensus 22 ~~~~~-~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~ 98 (251)
T cd03273 22 GFDPQ-FNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENY 98 (251)
T ss_pred cCCCC-eEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCC
Confidence 34445 99999999999999999999998763 2467877776 3211 1234799999984 345
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC--------------------CccCcccCCcCCCCCCCCCh
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM--------------------NSQHTRIGSSSITQKVVLSG 132 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--------------------~~~~~~v~~~~~~~~~~LSg 132 (290)
+.+||.+++.+......... ......+.+.++++.+++. +..+++ +.+||+
T Consensus 99 ~~ltV~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~--------~~~lS~ 169 (251)
T cd03273 99 PEITVTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKES--------LTELSG 169 (251)
T ss_pred ceEEEEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccc--------ccccCH
Confidence 67899888866432211000 0112235678899999985 233445 556999
Q ss_pred HHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 133 GERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 133 GqrqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
|||||++||++|+ .+|+++|+||||++||+..+..+++.|+++ .+ |.|+|++||+. ++.+.||+++-+.
T Consensus 170 G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-~~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 170 GQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-FK-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-cC-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9999999999998 578999999999999999999999999998 44 78999999994 6778899998875
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=1.7e-30 Score=231.48 Aligned_cols=175 Identities=20% Similarity=0.332 Sum_probs=124.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC----------------CCCCCCCcc--------EEEECCEe----cC-c--ccccc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR----------------LPDDCIIDG--------DIRVNGKP----VE-G--KFRSA 61 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~----------------~~~~~~~~G--------~I~i~G~~----~~-~--~~~~~ 61 (290)
|++++|+||||||||||+++|+++ ..++ +| +|.+++.+ +. . .+++.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ 99 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRT 99 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCCccCCCCCEEEEEEE
Confidence 789999999999999999999843 3332 34 55565532 11 1 35667
Q ss_pred EEEEccCCCCCC-CCCHHHHHHHHHHhcCchhhhHH-HHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHH
Q psy2520 62 CGFMYQHDLFSP-SLTVYEHLYFMALLKLDRRVKAY-QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLS 139 (290)
Q Consensus 62 ig~v~Q~~~~~~-~lTv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ 139 (290)
++|++|+..+++ ..|..|...+............. .... .+.+.+++....+.. +..||||||||++
T Consensus 100 ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg---~i~~l~~l~~~~~~~--------~~~lS~G~~~r~~ 168 (243)
T cd03272 100 IGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQG---KINSLTNMKQDEQQE--------MQQLSGGQKSLVA 168 (243)
T ss_pred EECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcC---chHHhhhcccccccc--------ccccCHHHHHHHH
Confidence 999999877776 45776665554433211100000 0011 223334455455555 4569999999999
Q ss_pred HHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 140 FATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 140 ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
||++|+. +|+++||||||++||+.++..+++.|+++ .+ +.+||+++|++ ++.++||++++|.
T Consensus 169 la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~-~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 169 LALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL-SD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH-hC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 9999974 58999999999999999999999999998 44 78889888874 5789999999986
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.97 E-value=2.2e-30 Score=225.75 Aligned_cols=165 Identities=27% Similarity=0.355 Sum_probs=125.0
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHH----cCCCCCCCCccEEEECCEecCc-cccccEEEEccCC-----CCCCCC
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALS----QRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHD-----LFSPSL 75 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~----G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~-----~~~~~l 75 (290)
.++.+.+| +++|+|||||||||||++|. |..+|+ +|.+..+.+.+.. ..+..|+++||++ .....+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 45677888 99999999999999999995 887774 4555422222222 2456799999987 334556
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHH------HHHHHHHHhCCC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR------LSFATELLTDPA 149 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqR------v~ia~aL~~~p~ 149 (290)
|+++++.+.. .. .+.+.+ ++. +..||+||+|| ++||++++.+|+
T Consensus 92 ~~~~~~~~~~---------~~----~~~~~~---------~~~--------~~~LS~G~~~~~~la~rlala~al~~~p~ 141 (204)
T cd03240 92 AILENVIFCH---------QG----ESNWPL---------LDM--------RGRCSGGEKVLASLIIRLALAETFGSNCG 141 (204)
T ss_pred hHhhceeeec---------hH----HHHHHH---------hcC--------ccccCccHHHHHHHHHHHHHHHHhccCCC
Confidence 8888886531 01 112222 344 45699999996 789999999999
Q ss_pred eEEEeCCCCCCCHHHHH-HHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 150 LLLCDEPTTGLDSFSAS-KLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 150 llllDEPtsgLD~~~~~-~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
++|+||||++||+..+. .+.++|++++++.|.|||++||++ . ....||+++.|.+
T Consensus 142 illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~-~-~~~~~d~i~~l~~ 197 (204)
T cd03240 142 ILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE-E-LVDAADHIYRVEK 197 (204)
T ss_pred EEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH-H-HHhhCCEEEEEee
Confidence 99999999999999999 999999999544478999999996 3 4578999999964
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=1.4e-29 Score=221.93 Aligned_cols=178 Identities=19% Similarity=0.133 Sum_probs=122.1
Q ss_pred ceEEEEe-CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECC-Ee-cCc-cccccEEEEccCCCCCCCCCHHHH
Q psy2520 5 ELTGAAL-SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG-KP-VEG-KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 5 ~is~~~~-~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G-~~-~~~-~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
+|+|... +|++++|+|||||||||||++|++.+... ..+....+. .. +.. .....|+++||++.... ++..+
T Consensus 19 ~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 19 VIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred EEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 4565543 48899999999999999999999644211 123333221 01 111 24456999999753211 11111
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh----------CCCe
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT----------DPAL 150 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~----------~p~l 150 (290)
. ........+. ..+...++.+..++. +..||+||+||++||++|+. +|++
T Consensus 95 ~----------gl~~~~~~~~--~~l~~g~l~~~l~~~--------~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ 154 (213)
T cd03279 95 R----------GLDYDQFTRI--VLLPQGEFDRFLARP--------VSTLSGGETFLASLSLALALSEVLQNRGGARLEA 154 (213)
T ss_pred c----------CCCHHHHHHh--hhhhhcchHHHhcCC--------ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCE
Confidence 1 0111111110 123333445555666 45599999999999999985 5789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
+||||||++||+.++..+.+.|++++ +++.|||++||++ ..+..++|++++|++|.
T Consensus 155 lllDEp~~~lD~~~~~~~~~~l~~~~-~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 155 LFIDEGFGTLDPEALEAVATALELIR-TENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 99999999999999999999999994 4589999999997 57888999999999885
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=1.1e-31 Score=235.37 Aligned_cols=168 Identities=15% Similarity=0.164 Sum_probs=125.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCch--
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-- 91 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-- 91 (290)
++++|+||||||||||+++|.-. +|.+.....++++++++|+..+++.+|+.+++.+........
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLL 92 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHH
Confidence 79999999999999999999722 222221112356999999988889899988877654321100
Q ss_pred ---hhhHHHHHH--HHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCH
Q psy2520 92 ---RVKAYQRIA--LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDS 162 (290)
Q Consensus 92 ---~~~~~~~~~--~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~----~p~llllDEPtsgLD~ 162 (290)
......... ...++++.+++.+..+++ +..||+|||||++||+|++. .|++++|||||+|||+
T Consensus 93 ~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~--------~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~ 164 (212)
T cd03274 93 KSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN--------ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDF 164 (212)
T ss_pred HHCCcCCCCCceEEcCCcEEEeeccccccccc--------hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCH
Confidence 000000000 014566677887777777 45599999999999999975 4799999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
.++..+.+.|+++ ++ +.|+|++||++ ++.++||++++|..
T Consensus 165 ~~~~~l~~~l~~~-~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 165 RNVSIVANYIKER-TK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHHHHH-cC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999999998 44 57899999984 68899999999974
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=1.6e-28 Score=262.96 Aligned_cols=138 Identities=27% Similarity=0.267 Sum_probs=111.2
Q ss_pred CCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHH---h
Q psy2520 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELL---T 146 (290)
Q Consensus 71 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~---~ 146 (290)
.+...||.|++.+...-.........+..+++ ++++.+||.+. .++. +.+|||||+|||+||++|+ .
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~--------~~tLSGGE~QRV~LAraL~~~~~ 829 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP--------LSSLSGGEIQRLKLAYELLAPSK 829 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc--------cccCCHHHHHHHHHHHHHhhcCC
Confidence 45678999999987542211011122233344 58899999876 6777 4569999999999999998 6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe------CCeEEEEcCHHHHHH
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA------DSRTAFIGSKDAALA 220 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~ 220 (290)
+|++|||||||+|||+.++..++++|++++ +.|.|||+++|++ ..+ ++||++++|. +|++++.|+++++..
T Consensus 830 ~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~-~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 830 KPTLYVLDEPTTGLHTHDIKALIYVLQSLT-HQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999994 5699999999997 455 8999999996 789999999988753
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.96 E-value=1.7e-27 Score=245.33 Aligned_cols=125 Identities=30% Similarity=0.394 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC---Ce
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP---AL 150 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p---~l 150 (290)
+||.|++.|+..... .....++++.+||.. ..++. +..|||||+||+.||++|+.+| ++
T Consensus 792 ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~--------~~tLSgGEkQRl~LAraL~~~p~~~~l 854 (943)
T PRK00349 792 MTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP--------ATTLSGGEAQRVKLAKELSKRSTGKTL 854 (943)
T ss_pred CcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC--------cccCCHHHHHHHHHHHHHhcCCCCCeE
Confidence 688888888654321 122357899999976 46776 4559999999999999999999 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 219 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 219 (290)
+||||||+|||+..+..+++.|+++. +.|.|||+++|++ ..+ ..||+++.| .+|++++.|+++++.
T Consensus 855 lILDEPtsGLD~~~~~~L~~~L~~l~-~~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 855 YILDEPTTGLHFEDIRKLLEVLHRLV-DKGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999999994 5689999999997 344 689999999 799999999998764
No 382
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=2.6e-27 Score=223.84 Aligned_cols=201 Identities=25% Similarity=0.326 Sum_probs=170.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec-Cc-----cccccEEEEccCC---CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-EG-----KFRSACGFMYQHD---LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~-~~-----~~~~~ig~v~Q~~---~~~~~ 74 (290)
.+|||++.+||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|+++ .. ..+..+||||.|. .+.+.
T Consensus 275 ~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~ 351 (501)
T COG3845 275 KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351 (501)
T ss_pred eeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccCCHHHHHhcCCccCChhhccCccccC
Confidence 4799999999999999999999999999999999874 69999999997 22 2346799999974 67889
Q ss_pred CCHHHHHHHHHHhcC----chhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 75 LTVYEHLYFMALLKL----DRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 75 lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
+|+.||+.+...... .......+..+.+.++++.+++.. ....+ +.+||||++||+-+||.|..+|+
T Consensus 352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~--------a~~LSGGNqQK~IlaREl~~~p~ 423 (501)
T COG3845 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP--------ARSLSGGNQQKLILARELARRPD 423 (501)
T ss_pred ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc--------hhhcCCcceehhhhhhhhccCCC
Confidence 999999988654211 112334455667889999998862 23333 56699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
+||+.+||.|||..+...+.+.|.+. ++.|+.|+++|-++ +++..+||||.+|++|+++...++++
T Consensus 424 lLI~~qPTrGLDvgA~~~I~~~l~e~-r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 424 LLIAAQPTRGLDVGAIEFIHERLLEL-RDAGKAVLLISEDL-DEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred EEEEcCCCccccHHHHHHHHHHHHHH-HhcCCEEEEEehhH-HHHHHhhheeeeeeCCceeccccccc
Confidence 99999999999999999999999999 56799999999997 68999999999999999998777764
No 383
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=2.1e-28 Score=209.44 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=162.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCC-CccEEEECCEecCc----c----ccccEEEEccCCC--CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGDIRVNGKPVEG----K----FRSACGFMYQHDL--FS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~-~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~~--~~ 72 (290)
+++|++++.||+-+++|.||||||-..++|+|..+.+.. +..+..+++.++-. + ..+.|+++||++. +-
T Consensus 24 D~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLD 103 (330)
T COG4170 24 DRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLD 103 (330)
T ss_pred eeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcC
Confidence 579999999999999999999999999999999876431 23445666666532 1 3356899999974 44
Q ss_pred CCCCHHHHHHHHHHh---cCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 73 PSLTVYEHLYFMALL---KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
|.-+|...+.-.... +......-..+++++-++|.++|+.+..|---.. +.+|.-||-|+|.||.|++.+|+
T Consensus 104 PS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SY-----P~ElTeGE~QKVMIA~A~AnqPr 178 (330)
T COG4170 104 PSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSY-----PYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred hHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhC-----cchhccCcceeeeeehhhccCCc
Confidence 554554443322111 1111111122445678999999997654421111 56799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+||.||||+++||.++.+++.+|.++++.+|+||++++||+ ..+.++||++-+|.-|+-+..++.++++
T Consensus 179 LLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~ESa~~e~l~ 247 (330)
T COG4170 179 LLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQTVESAPSEELV 247 (330)
T ss_pred eEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEecccccccchhHHh
Confidence 99999999999999999999999999877899999999998 4799999999999999999999988776
No 384
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=1.9e-27 Score=206.36 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=120.1
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
++++.+.+| +.+|+|||||||||||.+|...+.... . ....|..+.. .....|.+.+|+..+++
T Consensus 14 ~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------ 82 (198)
T cd03276 14 HLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------ 82 (198)
T ss_pred eeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccC------
Confidence 467778887 889999999999999999884332210 0 1111221111 12345888888766554
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH----HhCCCeEEEeC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL----LTDPALLLCDE 155 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL----~~~p~llllDE 155 (290)
| .. ... ....+.++++. .+..+++ +.+||+|||||++||++| +.+|+++||||
T Consensus 83 ~-------~~-~~~----~~~~~~~~l~~---~~~~~~~--------~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 83 N-------PL-CVL----SQDMARSFLTS---NKAAVRD--------VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred C-------cC-CHH----HHHHHHHHhcc---ccccCCc--------ccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 1 00 001 12345566665 5556666 556999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQ--RKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~--~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
||+|||+..+..+.++|++++++ .+.|||++||++. ++..+ |+|.+|..++
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLASS-DDVKVFRMKD 192 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-ccccc-cceeEEEecC
Confidence 99999999999999999998544 2468999999974 56654 9999998754
No 385
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.4e-28 Score=222.25 Aligned_cols=183 Identities=24% Similarity=0.357 Sum_probs=148.5
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||++++.||++-|+|.||||||||++.|+|+++|. +|+|++||+++.. ++|+-++-||-|-.+|+.+--.|+
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~ 417 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG 417 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc
Confidence 589999999999999999999999999999999995 8999999999975 477778888877777664211111
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
+ .....++.+++++.+.+ ..|..+. .-.||.|||||+++..||+-+-+|+++||=-
T Consensus 418 -------~--------as~q~i~~~LqrLel~~ktsl~d~~fs------~~kLStGQkKRlAll~AllEeR~Ilv~DEWA 476 (546)
T COG4615 418 -------K--------ASPQLIEKWLQRLELAHKTSLNDGRFS------NLKLSTGQKKRLALLLALLEERDILVLDEWA 476 (546)
T ss_pred -------C--------CChHHHHHHHHHHHHhhhhcccCCccc------ccccccchHHHHHHHHHHHhhCCeEEeehhh
Confidence 0 11233456666666643 2333322 2459999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
+..||.-++.+...+--+-++.|+||+.+||| + ..+..+||++.|.+|+++..-
T Consensus 477 ADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHD-d-~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 477 ADQDPAFRREFYQVLLPLLKEQGKTIFAISHD-D-HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred ccCChHHHHHHHHHHhHHHHHhCCeEEEEecC-c-hhhhhHHHHHHHhcCceeecc
Confidence 99999999999988777668889999999998 3 578899999999999998653
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=2.6e-26 Score=236.27 Aligned_cols=124 Identities=29% Similarity=0.370 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh---CCCe
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLT---DPAL 150 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~---~p~l 150 (290)
+||.|.+.|+..+.. .....++|+.+||.. ..++. +..|||||+||+.||++|+. +|++
T Consensus 790 ~tv~e~~~f~~~~~~---------i~~~l~~L~~~gL~~l~l~~~--------~~tLSgGe~QRl~LA~aL~~~~~~p~l 852 (924)
T TIGR00630 790 MTVEEAYEFFEAVPS---------ISRKLQTLCDVGLGYIKLGQP--------ATTLSGGEAQRIKLAKELSKRSTGRTL 852 (924)
T ss_pred CcHHHHHHHHHhccc---------hhHHHHHHHHcCCCchhhcCc--------cccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence 566666666543321 112457888999975 35666 45699999999999999997 5999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 218 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 218 (290)
+||||||+|||+..+..+++.|+++. +.|.|||+++|++ ..+ ..||++++| ++|++++.|+++++
T Consensus 853 lILDEPtsgLD~~~~~~L~~~L~~l~-~~G~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 853 YILDEPTTGLHFDDIKKLLEVLQRLV-DQGNTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999994 5689999999997 344 689999999 79999999998864
No 387
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=224.80 Aligned_cols=177 Identities=31% Similarity=0.375 Sum_probs=138.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.+.++.+++|+.+.|.||||||||||+|+|+|+-|-. +|+|.+- ....+-|+||.|.+... |.+|-+.+
T Consensus 410 ~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P-------~~~~~lflpQ~PY~p~G-tLre~l~Y 478 (604)
T COG4178 410 SELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP-------ADSALLFLPQRPYLPQG-TLREALCY 478 (604)
T ss_pred ccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC-------CCCceEEecCCCCCCCc-cHHHHHhC
Confidence 4689999999999999999999999999999998764 6877653 12358999999886554 99999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCC-cCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS-SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~-~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
...... ...+.+.++|.++||.+..++.=.. ++ -..||+||||||++||.|+++|++++|||.|++||+
T Consensus 479 P~~~~~-------~~d~~l~~vL~~vgL~~L~~rl~~~~~W---~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 479 PNAAPD-------FSDAELVAVLHKVGLGDLAERLDEEDRW---DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred CCCCCC-------CChHHHHHHHHHcCcHHHHHHHhccCcH---hhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 532211 1124466788888886654332110 01 134999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
.+...+++.+++-. .+.|||.|.|.+ .+..+.++.+-+.
T Consensus 549 ~~e~~l~q~l~~~l--p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 549 ETEDRLYQLLKEEL--PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHHhhC--CCCEEEEeccch--hhHHHHhhheeec
Confidence 99999999998842 479999999986 4778877766654
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.94 E-value=1.9e-26 Score=215.74 Aligned_cols=169 Identities=23% Similarity=0.307 Sum_probs=137.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 87 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~ 87 (290)
++|..||+++++||||-||||+.++|+|.++|+ +|+ .. .-+|+|=||--.--...||.+.+.-....
T Consensus 362 G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EE------DLKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred CeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Cc------cceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 456778999999999999999999999999995 676 11 23488999853333567999987654432
Q ss_pred cCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHH
Q psy2520 88 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 167 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~ 167 (290)
..... -...++++-++|.+..++.+. +|||||.|||+||.+|..+++++|||||++.||...+..
T Consensus 429 ~~~~s-------~~~~ei~~pl~l~~i~e~~v~--------~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~ 493 (591)
T COG1245 429 AFGSS-------YFKTEIVKPLNLEDLLERPVD--------ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII 493 (591)
T ss_pred hcccc-------hhHHhhcCccchHHHHhcccc--------cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHH
Confidence 11111 112467888999999999954 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 168 LIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 168 i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
+.+.|+++..++++|.++|.||+. .+--++||+++..
T Consensus 494 vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 494 VAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence 999999997778999999999974 5556789998885
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=1.2e-26 Score=207.89 Aligned_cols=186 Identities=16% Similarity=0.202 Sum_probs=118.5
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe-c-Cc-------cccccEEEEc--cCCCC-CCC
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP-V-EG-------KFRSACGFMY--QHDLF-SPS 74 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~-~-~~-------~~~~~ig~v~--Q~~~~-~~~ 74 (290)
++.+.++ +++|+|||||||||||.+|++.+.+. .|++...+.. + .. .....+...| |++.. ...
T Consensus 17 ~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~ 92 (247)
T cd03275 17 VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFR 92 (247)
T ss_pred eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEE
Confidence 3444455 99999999999999999999988653 3555443211 0 00 0122333444 33211 111
Q ss_pred CCHHHHH-HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccC--------------cccCCcCCCCCCCCChHHHHHHH
Q psy2520 75 LTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH--------------TRIGSSSITQKVVLSGGERKRLS 139 (290)
Q Consensus 75 lTv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--------------~~v~~~~~~~~~~LSgGqrqRv~ 139 (290)
.++.+.. .|. ... .... .+.++++++.+|+..... ..+.......+..||+|||||++
T Consensus 93 ~~~~~~~~~~~--ing-k~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~ 165 (247)
T cd03275 93 RIITGGSSSYR--ING-KVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAA 165 (247)
T ss_pred EEEECCceEEE--ECC-EEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHH
Confidence 1111110 000 011 1111 233567888888853211 11000000013669999999999
Q ss_pred HHHHHHhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 140 FATELLTD----PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 140 ia~aL~~~----p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
||++++.+ |+++||||||++||+..+..+.+.|++++ +.|.+||++||++ ++...||++++|..
T Consensus 166 la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~-~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 166 LALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQA-GPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhc-cCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 99999975 89999999999999999999999999994 4589999999995 46789999999874
No 390
>KOG0927|consensus
Probab=99.94 E-value=9.1e-27 Score=221.56 Aligned_cols=182 Identities=25% Similarity=0.301 Sum_probs=142.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC--CCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD--LFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~--~~~~~lTv~e~l 81 (290)
.+++|-+..++.+++|||||||||||||+++|.+.|. .|.|.-.- ...+++.-|+. .+.-..++.|++
T Consensus 407 ~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~-------H~~~~~y~Qh~~e~ldl~~s~le~~ 476 (614)
T KOG0927|consen 407 KKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHS-------HNKLPRYNQHLAEQLDLDKSSLEFM 476 (614)
T ss_pred hhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---cccccccc-------cccchhhhhhhHhhcCcchhHHHHH
Confidence 4678899999999999999999999999999999994 78886432 23355555652 333345666655
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.-. ... ..+.+.+..++.++||. +..+.+ +++||+|||.||.+|+.++.+|.+|+|||||++|
T Consensus 477 ~~~---~~~-----~~~~e~~r~ilgrfgLtgd~q~~p--------~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhL 540 (614)
T KOG0927|consen 477 MPK---FPD-----EKELEEMRSILGRFGLTGDAQVVP--------MSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHL 540 (614)
T ss_pred HHh---ccc-----cchHHHHHHHHHHhCCCccccccc--------hhhcccccchhHHHHHHHhcCCcEEEecCCCcCC
Confidence 421 111 22345678899999997 445555 5669999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKD 216 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~ 216 (290)
|..+...+-+.|.++ . -+||++|||.. .+.++++++++..+|.+. +.|+..
T Consensus 541 Di~tid~laeaiNe~-~---Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 541 DIETIDALAEAINEF-P---GGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred CchhHHHHHHHHhcc-C---Cceeeeechhh-HHHHHHHHhHhhccCceeecCccHH
Confidence 999999999999887 2 37999999974 789999999999988765 456554
No 391
>KOG0927|consensus
Probab=99.93 E-value=6.9e-26 Score=215.57 Aligned_cols=197 Identities=24% Similarity=0.251 Sum_probs=134.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
-|++|++.+|+-++|+|||||||||+|++|+|...|... .=.++.-.+++.....+.+-++.+. .-..+.-+.+
T Consensus 92 kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~-~~d~y~ls~e~~ps~~~av~~v~~~-----~~~e~~rle~ 165 (614)
T KOG0927|consen 92 KDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE-HIDFYLLSREIEPSEKQAVQAVVME-----TDHERKRLEY 165 (614)
T ss_pred eeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc-ccchhhhcccCCCchHHHHHHHhhh-----hHHHHHHHHH
Confidence 378899999999999999999999999999999888421 1223333333322111111111100 0000000110
Q ss_pred HHH-hc----------------CchhhhHHHHHHHHHHHHHHcCC-CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH
Q psy2520 84 MAL-LK----------------LDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 145 (290)
Q Consensus 84 ~~~-~~----------------~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~ 145 (290)
... +. .......+....++.++|..+|. .+..++. +.+||||+|.|++|||+|.
T Consensus 166 ~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~--------~~~~SgGwrmR~aLAr~Lf 237 (614)
T KOG0927|consen 166 LAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKK--------VKDLSGGWRMRAALARALF 237 (614)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHH--------hhccCchHHHHHHHHHHHh
Confidence 000 00 00011112233445667777766 4566777 5669999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE-EEEcCHHHH
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT-AFIGSKDAA 218 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i-~~~g~~~~~ 218 (290)
.+|.+|||||||++||+.+...+-+.|.+. .. + ++++++|.- +.+-.+|.+|+-|++++. .|.|+.+..
T Consensus 238 ~kP~LLLLDEPtnhLDleA~~wLee~L~k~-d~-~-~lVi~sh~Q-Dfln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 238 QKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DR-I-ILVIVSHSQ-DFLNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHhc-cC-c-eEEEEecch-hhhhhHhhhhheecccceeeecCCHHHH
Confidence 999999999999999999999999999887 32 2 899999995 689999999999999994 566777654
No 392
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.91 E-value=1.5e-24 Score=188.23 Aligned_cols=144 Identities=19% Similarity=0.134 Sum_probs=107.7
Q ss_pred ceEEEEeCCe-EEEEECCCCChHHHHHHHHH--------cCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCC
Q psy2520 5 ELTGAALSGT-LVAIMGASGAGKSTLLAALS--------QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 5 ~is~~~~~Ge-~~~IiGpnGaGKSTLl~~l~--------G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~l 75 (290)
++|+++.+|+ +++|+|||||||||||++|+ |...|. ... ..++|+.|....+
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~~~-------------~~~~~~~~~~~~l--- 79 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---AEG-------------SSLPVFENIFADI--- 79 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---ccc-------------ccCcCccEEEEec---
Confidence 6899999994 89999999999999999998 443331 000 1233433321100
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
+..+..+.. ...+|+||||++.+++++ .+|+++|+||
T Consensus 80 ----------------------------------g~~~~l~~~--------~s~fs~g~~~~~~i~~~~-~~p~llllDE 116 (200)
T cd03280 80 ----------------------------------GDEQSIEQS--------LSTFSSHMKNIARILQHA-DPDSLVLLDE 116 (200)
T ss_pred ----------------------------------CchhhhhcC--------cchHHHHHHHHHHHHHhC-CCCcEEEEcC
Confidence 000111112 234999999999999884 8999999999
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 156 PTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 156 PtsgLD~~~~~~i~-~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|++|+|+..+..+. ..++.+ .+.|.++|++||+. ++..+||+++.|.+|++.+.+
T Consensus 117 p~~glD~~~~~~i~~~~l~~l-~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 117 LGSGTDPVEGAALAIAILEEL-LERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99999999999996 467777 45589999999983 678999999999999998774
No 393
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=6.4e-24 Score=186.26 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=68.2
Q ss_pred CCCCChHHHHHHHHHHHH----HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEeCCCcHHHHhhcC--
Q psy2520 127 KVVLSGGERKRLSFATEL----LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK-KTVLCTIHQPSSELIDMFD-- 199 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL----~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g-~tii~~tH~~~~~~~~~~d-- 199 (290)
+..||+|||||+.++++| +.+|+++|+||||++||+.++..+++.|++++++.| .|+|++||++. +...++|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCce
Confidence 556999999999887655 479999999999999999999999999999854424 58999999974 5667776
Q ss_pred eEEEEeCCe
Q psy2520 200 KIILLADSR 208 (290)
Q Consensus 200 ~v~~l~~G~ 208 (290)
++++|.+|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788888886
No 394
>KOG2355|consensus
Probab=99.90 E-value=1.7e-23 Score=178.69 Aligned_cols=189 Identities=21% Similarity=0.236 Sum_probs=144.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---------------cccccEEEEccCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---------------KFRSACGFMYQHD 69 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---------------~~~~~ig~v~Q~~ 69 (290)
++|++++.|....++|.||||||||||+|+|-.--. -|.|.++|++.-. .|++.+++-- +-
T Consensus 32 Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-ev 107 (291)
T KOG2355|consen 32 DFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EV 107 (291)
T ss_pred EEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCccccccccccCceeEecccccccccccc-cc
Confidence 689999999999999999999999999999975442 4899999987522 2444444433 22
Q ss_pred CCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 70 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
.+..++++.+. .|+..--. .++. +++++.+.+.-.+. ...+|-|||+||.|++.|++.-+
T Consensus 108 plq~D~sae~m-ifgV~g~d------p~Rr---e~LI~iLDIdl~WR----------mHkvSDGqrRRVQicMGLL~Pfk 167 (291)
T KOG2355|consen 108 PLQGDISAEHM-IFGVGGDD------PERR---EKLIDILDIDLRWR----------MHKVSDGQRRRVQICMGLLKPFK 167 (291)
T ss_pred cccccccHHHH-HhhccCCC------hhHh---hhhhhheeccceEE----------EeeccccchhhhHHHHhccccee
Confidence 33445666554 34432111 1222 45666666642221 12389999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
+|||||-|-.||..++..+++.|++-+.++|.||++.||-.. -+..+..+++.|++|+++..-+...+
T Consensus 168 VLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 168 VLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred EEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhEEEecCCeeeeccccchh
Confidence 999999999999999999999999998889999999999874 68899999999999999875554443
No 395
>KOG0062|consensus
Probab=99.90 E-value=3.7e-24 Score=202.83 Aligned_cols=183 Identities=27% Similarity=0.331 Sum_probs=127.5
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccC-CCCCCCCCHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH-DLFSPSLTVYEHLYF 83 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~-~~~~~~lTv~e~l~~ 83 (290)
+-++++..|..++|+|+||+|||||||+|+. |+|. +-++.+..+. -+++-. ..+..+..+.+.+.-
T Consensus 98 ~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~--~f~veqE~~g--~~t~~~~~~l~~D~~~~dfl~~ 164 (582)
T KOG0062|consen 98 KANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVS--GFHVEQEVRG--DDTEALQSVLESDTERLDFLAE 164 (582)
T ss_pred CCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcC--ccCchhheec--cchHHHhhhhhccHHHHHHHHh
Confidence 3467888999999999999999999999996 2222 2222222111 122211 122223333332221
Q ss_pred HHHhcCchhhhHH-HHHHHHHHHHHHcCCCCcc-CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 84 MALLKLDRRVKAY-QRIALINSLLIELGLMNSQ-HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
-..+ ... ...+...++|..+|....+ .++ .++||||=|.|++|||||..+|++|||||||+.||
T Consensus 165 e~~l------~~~~~l~ei~~~~L~glGFt~emq~~p--------t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD 230 (582)
T KOG0062|consen 165 EKEL------LAGLTLEEIYDKILAGLGFTPEMQLQP--------TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD 230 (582)
T ss_pred hhhh------hccchHHHHHHHHHHhCCCCHHHHhcc--------ccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence 1111 111 2223334488899997544 444 45699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 219 (290)
..+...+.+.|..+ ..|+|+|||| +.++-..|..|+.+++-++- |.|+.++..
T Consensus 231 v~av~WLe~yL~t~----~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 231 VVAVAWLENYLQTW----KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred hHHHHHHHHHHhhC----CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 99999999999876 3699999999 56888899999999887764 568776544
No 396
>KOG0060|consensus
Probab=99.90 E-value=8.3e-23 Score=195.93 Aligned_cols=184 Identities=22% Similarity=0.227 Sum_probs=138.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||.+..|+-+.|.||||||||+|||+++|+-+. .+|.+.--... -.+.+-|+||.|.+.- -|.+|.+.|
T Consensus 452 e~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~---~~G~l~k~~~~----~~~~lfflPQrPYmt~-GTLRdQvIY 523 (659)
T KOG0060|consen 452 ENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS---TGGKLTKPTDG----GPKDLFFLPQRPYMTL-GTLRDQVIY 523 (659)
T ss_pred eeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc---CCCeEEecccC----CCCceEEecCCCCccc-cchhheeec
Confidence 479999999999999999999999999999999875 37988753322 1256999999987544 499999988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCc------ccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHT------RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
....-.. ..+....+++...|+.++|.|...+ .+--+| ...||+||+||+++||.+.++|++-||||-|
T Consensus 524 P~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW---~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~T 598 (659)
T KOG0060|consen 524 PLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDW---MDVLSPGEQQRLAFARLFYHKPKFAILDECT 598 (659)
T ss_pred cCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccH---HhhcCHHHHHHHHHHHHHhcCCceEEeechh
Confidence 6321110 0111122345556666666544322 221112 2459999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
+++|......+.+.+++. |.|.|-|+|.. .+.++-|.++-|+.
T Consensus 599 SAv~~dvE~~~Yr~~r~~----giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 599 SAVTEDVEGALYRKCREM----GITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred hhccHHHHHHHHHHHHHc----CCeEEEeccHH--HHHhhhhEEEEecC
Confidence 999999999998887665 89999999985 47888899999975
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=1.7e-23 Score=196.00 Aligned_cols=171 Identities=29% Similarity=0.353 Sum_probs=124.8
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE-----------EECCEecCcccc----cc--EEEEccC----
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI-----------RVNGKPVEGKFR----SA--CGFMYQH---- 68 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I-----------~i~G~~~~~~~~----~~--ig~v~Q~---- 68 (290)
.++|++++|+||||-||||-+++|+|.+.|+. |+- .+-|..+...++ .. +..=+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 47899999999999999999999999999963 432 111111111010 11 1122221
Q ss_pred CCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 69 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
|..+. -||.|-|.-. ...-..+++++.++|.+..++. +.+|||||.||++||.++++++
T Consensus 174 Pk~~K-G~v~elLk~~------------de~g~~devve~l~L~nvl~r~--------v~~LSGGELQr~aIaa~l~rdA 232 (591)
T COG1245 174 PKVVK-GKVGELLKKV------------DERGKFDEVVERLGLENVLDRD--------VSELSGGELQRVAIAAALLRDA 232 (591)
T ss_pred HHHhc-chHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhh--------hhhcCchHHHHHHHHHHHhccC
Confidence 11111 1444433211 1112457899999999999999 4559999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
+++++|||||-||...+....+.+++++ +.+++||+|.||+ ..+--++|.|.++..
T Consensus 233 DvY~FDEpsSyLDi~qRl~~ar~Irel~-~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 233 DVYFFDEPSSYLDIRQRLNAARVIRELA-EDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred CEEEEcCCcccccHHHHHHHHHHHHHHh-ccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 9999999999999999999999999995 4489999999997 345557899988863
No 398
>KOG0062|consensus
Probab=99.89 E-value=6.1e-23 Score=194.60 Aligned_cols=182 Identities=25% Similarity=0.305 Sum_probs=140.9
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 84 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~ 84 (290)
++++.++.-+..+++|+||+||||+++++.|-+.| ..|-+.+.+ |.+|+|-+|...-+-.+.|.+- .+.
T Consensus 382 ~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~---~rgi~~~~~-------r~ri~~f~Qhhvd~l~~~v~~v-d~~ 450 (582)
T KOG0062|consen 382 QLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP---TRGIVGRHP-------RLRIKYFAQHHVDFLDKNVNAV-DFM 450 (582)
T ss_pred ccCCccchhhhhheeccCchhHHHHHHHHhccCCc---ccceeeecc-------cceecchhHhhhhHHHHHhHHH-HHH
Confidence 45666677778899999999999999999998887 378777654 5679999997543333444332 222
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
...+... -.+.+..-+..+||+. .+... +.+||||||-||++|.+...+|.+|+|||||+.||..
T Consensus 451 ~~~~pG~------~~ee~r~hl~~~Gl~g~la~~s--------i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~d 516 (582)
T KOG0062|consen 451 EKSFPGK------TEEEIRRHLGSFGLSGELALQS--------IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD 516 (582)
T ss_pred HHhCCCC------CHHHHHHHHHhcCCCchhhhcc--------ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHH
Confidence 2222211 1234567889999964 45555 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE-EcCHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF-IGSKD 216 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~-~g~~~ 216 (290)
+...+.+.|+.+ . | .||+||||. +++...|+.+|+.++|++.. .|...
T Consensus 517 sl~AL~~Al~~F-~--G-GVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ieg~~~ 565 (582)
T KOG0062|consen 517 SLGALAKALKNF-N--G-GVVLVSHDE-EFISSLCKELWVVEDGKVTPIEGGID 565 (582)
T ss_pred HHHHHHHHHHhc-C--C-cEEEEECcH-HHHhhcCceeEEEcCCcEEeeeccHH
Confidence 999999999987 2 3 699999995 68889999999999999874 45553
No 399
>KOG0066|consensus
Probab=99.88 E-value=1.1e-22 Score=189.87 Aligned_cols=180 Identities=28% Similarity=0.355 Sum_probs=135.6
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccC--CCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH--DLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~--~~~~~~lTv~e~l~ 82 (290)
+++|-|.-...+||+||||.||||||++|.|-+.|. .|+..-| .|-+||+.-|+ ..+-..-|..|+|.
T Consensus 605 kldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKn-------hrL~iG~FdQh~~E~L~~Eetp~EyLq 674 (807)
T KOG0066|consen 605 KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKN-------HRLRIGWFDQHANEALNGEETPVEYLQ 674 (807)
T ss_pred cccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhcc-------ceeeeechhhhhHHhhccccCHHHHHH
Confidence 355666667789999999999999999999999995 6766533 24469998886 35556667777765
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
-...+ +. ..+.+.|..+||...+++. .+..|||||+-||++|-.-+..|+||||||||++||.
T Consensus 675 r~FNl--py--------q~ARK~LG~fGL~sHAHTi-------kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDI 737 (807)
T KOG0066|consen 675 RKFNL--PY--------QEARKQLGTFGLASHAHTI-------KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDI 737 (807)
T ss_pred HhcCC--Ch--------HHHHHHhhhhhhhhccceE-------eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcch
Confidence 43322 11 1235788999998888875 2567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKD 216 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~ 216 (290)
.+...+.+.|.++ . -.||+||||-. .+.+.--.++++.+-.|- ..|+.+
T Consensus 738 ESIDALaEAIney-~---GgVi~VsHDeR-Li~eT~C~LwVvE~Q~i~eIdGdFe 787 (807)
T KOG0066|consen 738 ESIDALAEAINEY-N---GGVIMVSHDER-LIVETDCNLWVVENQGIDEIDGDFE 787 (807)
T ss_pred hhHHHHHHHHHhc-c---CcEEEEecccc-eeeecCceEEEEccCChhhccccHH
Confidence 9999999999987 2 36999999953 444444466666553332 235444
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.88 E-value=1.2e-21 Score=167.33 Aligned_cols=74 Identities=22% Similarity=0.334 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 130 LSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
||+|||||++||++++ .+|+++|+|||+++||+..+..+.+.|.+++ +.|.|+|++||++ +....+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~-~~g~tiIiiSH~~--~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMA-KHTSQFIVITLKK--EMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEECCH--HHHhhCCeEEEEE
Confidence 9999999999999997 6999999999999999999999999999984 4479999999996 3567899999997
Q ss_pred C
Q psy2520 206 D 206 (290)
Q Consensus 206 ~ 206 (290)
.
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
No 401
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.9e-21 Score=177.02 Aligned_cols=77 Identities=30% Similarity=0.453 Sum_probs=68.6
Q ss_pred CCCChHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 128 VVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
..|||||+||+++|++++. +|+++|+||||++||+..+..+.+.|++++ + +.|+|++||++. +..+||++++
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~-~~tii~isH~~~--~~~~~d~~~~ 244 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-R-SHQVLCITHLPQ--VAAMADNHFL 244 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEechHH--HHHhcCcEEE
Confidence 3499999999999997664 999999999999999999999999999983 3 689999999973 5689999999
Q ss_pred EeCCe
Q psy2520 204 LADSR 208 (290)
Q Consensus 204 l~~G~ 208 (290)
|.+|.
T Consensus 245 l~~~~ 249 (276)
T cd03241 245 VEKEV 249 (276)
T ss_pred EEEec
Confidence 98763
No 402
>KOG0064|consensus
Probab=99.86 E-value=1.7e-22 Score=191.95 Aligned_cols=182 Identities=22% Similarity=0.291 Sum_probs=127.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
+.+||++++|-.+.|+||||||||+|+++|.|+-|- ..|...+ | .+.++-|+||.|.+- .-|.+|.+.|
T Consensus 499 ~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---y~g~L~~---P----~~~~mFYIPQRPYms-~gtlRDQIIY 567 (728)
T KOG0064|consen 499 PKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---YNGLLSI---P----RPNNIFYIPQRPYMS-GGTLRDQIIY 567 (728)
T ss_pred cceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---cCCeeec---C----CCcceEeccCCCccC-cCcccceeec
Confidence 578999999999999999999999999999999765 2454443 1 234599999998765 4577777765
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCC-CCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ-KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~-~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
.-..-... .+....+....+|+.+.|.+...+..|=+.+.- ...||||||||+++||.+.++|+.-+|||.|++..+
T Consensus 568 PdS~e~~~--~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsi 645 (728)
T KOG0064|consen 568 PDSSEQMK--RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSI 645 (728)
T ss_pred CCcHHHHH--hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhccccc
Confidence 32110000 000011233455555555444433321000000 134999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
.....+.+..++. |.+.|-+||+|. ++++-..++-.
T Consensus 646 dvE~~i~~~ak~~----gi~llsithrps--lwk~h~~ll~~ 681 (728)
T KOG0064|consen 646 DVEGKIFQAAKDA----GISLLSITHRPS--LWKYHTHLLEF 681 (728)
T ss_pred chHHHHHHHHHhc----CceEEEeecCcc--HHHHHHHHHhc
Confidence 9999988887664 899999999984 67766555544
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.86 E-value=2.2e-21 Score=163.08 Aligned_cols=74 Identities=31% Similarity=0.423 Sum_probs=67.3
Q ss_pred CChHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 130 LSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
||+||+||++||++|+. +|+++|+|||++|+|+..+..+.+.+.++..+ +.++|++||++ ++...+|+++.|.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 89999999999999997 78999999999999999999999999998555 88999999996 4567899999986
Q ss_pred C
Q psy2520 206 D 206 (290)
Q Consensus 206 ~ 206 (290)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.86 E-value=4.3e-22 Score=175.77 Aligned_cols=149 Identities=21% Similarity=0.238 Sum_probs=109.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEE-EEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACG-FMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig-~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+++...++++++|.||||+||||||++++-. .+..++| |||.+...++ +
T Consensus 21 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~---~----- 72 (222)
T cd03285 21 NDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP---I----- 72 (222)
T ss_pred eeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe---c-----
Confidence 578999999999999999999999999998821 0111233 4444322111 0
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH--HhCCCeEEEeCC---C
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL--LTDPALLLCDEP---T 157 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL--~~~p~llllDEP---t 157 (290)
+++++..+++.+... ..+|.|+++++.+++++ +.+|+++||||| |
T Consensus 73 -------------------~~~il~~~~l~d~~~-----------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT 122 (222)
T cd03285 73 -------------------VDCILARVGASDSQL-----------KGVSTFMAEMLETAAILKSATENSLIIIDELGRGT 122 (222)
T ss_pred -------------------cceeEeeeccccchh-----------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCC
Confidence 123344455543332 23999999999999999 899999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
+++|+.+... .+++.+.++.|.++|++||+ .++.++||++..+.+|++...++
T Consensus 123 ~~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 123 STYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred ChHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9999988854 33455533347899999996 47889999999999999987764
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.86 E-value=2.1e-20 Score=200.98 Aligned_cols=126 Identities=26% Similarity=0.284 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC---CCe
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTD---PAL 150 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~---p~l 150 (290)
|||.|.+.|+... .+.....+.|..+||... +.+. ...|||||.||+-||..|..+ +.+
T Consensus 1661 mtv~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl~LGq~--------~~tLSGGE~qRikLa~~l~~~~~~~~l 1723 (1809)
T PRK00635 1661 TPIEEVAETFPFL---------KKIQKPLQALIDNGLGYLPLGQN--------LSSLSLSEKIAIKIAKFLYLPPKHPTL 1723 (1809)
T ss_pred CCHHHHHHHhhcc---------HHHHHHHHHHHHcCCCeeeCCCc--------CCccCchHHHHHHHHHHHhcCCCCCcE
Confidence 5666666664211 123344678999999754 3444 456999999999999999865 789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAALA 220 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 220 (290)
++|||||+||++....++++.|.++ .+.|.|||++.|++ ++.+.||.|+-| ..|+|++.|+|+++..
T Consensus 1724 yilDEPt~GLh~~d~~~Ll~~l~~L-~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1724 FLLDEIATSLDNQQKSALLVQLRTL-VSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHH-HhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9999999999999999999999999 56799999999996 467779999998 4579999999998753
No 406
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.86 E-value=1.1e-21 Score=170.36 Aligned_cols=142 Identities=16% Similarity=0.112 Sum_probs=101.1
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
++++.+|++++|+||||||||||||+|+|...- ...|.++.. -.+++|.+.+++.+|+.|++.++..
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a-----~~~~~q~~~l~~~~~~~d~l~~~~s 85 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA-----SSFELPPVKIFTSIRVSDDLRDGIS 85 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec-----CccCcccceEEEeccchhccccccC
Confidence 456777899999999999999999999985421 124444322 1367777788999999999987542
Q ss_pred hcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHH
Q psy2520 87 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 166 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 166 (290)
.. . ....++.++++.+++ .+|+++|+||||+|+|+..+.
T Consensus 86 ~~------~-~e~~~~~~iL~~~~~----------------------------------~~p~llllDEp~~glD~~~~~ 124 (199)
T cd03283 86 YF------Y-AELRRLKEIVEKAKK----------------------------------GEPVLFLLDEIFKGTNSRERQ 124 (199)
T ss_pred hH------H-HHHHHHHHHHHhccC----------------------------------CCCeEEEEecccCCCCHHHHH
Confidence 11 1 112345666665431 589999999999999999998
Q ss_pred HHH-HHHHHHHhcCCcEEEEEeCCCcHHHHhh--cCeEEEE
Q psy2520 167 KLI-RMMRELTSQRKKTVLCTIHQPSSELIDM--FDKIILL 204 (290)
Q Consensus 167 ~i~-~~l~~l~~~~g~tii~~tH~~~~~~~~~--~d~v~~l 204 (290)
.+. .+++.+. +.|.|+|++||++ +.+... .+++-.+
T Consensus 125 ~l~~~ll~~l~-~~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 125 AASAAVLKFLK-NKNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHH-HCCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 775 4788884 4589999999997 344443 3444443
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.85 E-value=5.6e-21 Score=177.48 Aligned_cols=180 Identities=25% Similarity=0.325 Sum_probs=136.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-----CCCccEEEECCEecCccccccEEEEccC-CCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD-----CIIDGDIRVNGKPVEGKFRSACGFMYQH-DLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~-----~~~~G~I~i~G~~~~~~~~~~ig~v~Q~-~~~~~~lTv 77 (290)
.|+|++++||++++|+|+|||||||||++|+|..... ..++|.|.+--.. ..+++|-+ ..-|..-|+
T Consensus 400 r~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~f~~~ti 472 (593)
T COG2401 400 RNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPEFGEVTI 472 (593)
T ss_pred eceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCcccccccCchhH
Confidence 4899999999999999999999999999999865321 1146766552211 23445543 223445566
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc--cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS--QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
.|.+.-- . . +...+.++|...|+.+- ..++ .++||-|||.|+.||.+++..|.+++.||
T Consensus 473 lehl~s~----t-G------D~~~AveILnraGlsDAvlyRr~--------f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 473 LEHLRSK----T-G------DLNAAVEILNRAGLSDAVLYRRK--------FSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred HHHHhhc----c-C------chhHHHHHHHhhccchhhhhhcc--------HhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 6665321 0 1 11234678999999653 3444 45699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCeEE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTA 210 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~i~ 210 (290)
=.|.||+.++..+..-|.+++++.|.|++++||++ +..-.+ -|+++++.-|+..
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 99999999999999999999888899999999997 455556 5899888777653
No 408
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.85 E-value=4.9e-20 Score=182.62 Aligned_cols=126 Identities=31% Similarity=0.420 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCcc-CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC---Ce
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-HTRIGSSSITQKVVLSGGERKRLSFATELLTDP---AL 150 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p---~l 150 (290)
|||.|...|+.... ...+..+.|..+||.-.. -+. ...|||||.|||-||..|.... -+
T Consensus 784 MTveEA~~FF~~~p---------~I~rkLqtL~dVGLgYi~LGQp--------atTLSGGEaQRvKLA~EL~k~~tg~Tl 846 (935)
T COG0178 784 MTVEEALEFFEAIP---------KIARKLQTLVDVGLGYIKLGQP--------ATTLSGGEAQRVKLAKELSKRSTGKTL 846 (935)
T ss_pred ccHHHHHHHHhcch---------HHHHHHHHHHHcCcceEecCCc--------cccccchHHHHHHHHHHHhhccCCCeE
Confidence 67777777654321 123345678889986432 333 5569999999999999998877 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAALA 220 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 220 (290)
+||||||+||-.....++++.|.++ .+.|-|||++.|++ ++.+.||.|+-| ..|+|++.|+|+++.+
T Consensus 847 YiLDEPTTGLH~~Di~kLl~VL~rL-vd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 847 YILDEPTTGLHFDDIKKLLEVLHRL-VDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999 56799999999996 588999999998 4689999999998764
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.84 E-value=3.3e-20 Score=191.67 Aligned_cols=136 Identities=24% Similarity=0.364 Sum_probs=109.1
Q ss_pred CCCCCHHHHHHHHHHhcCchh---h---hHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHH
Q psy2520 72 SPSLTVYEHLYFMALLKLDRR---V---KAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATEL 144 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL 144 (290)
+..+||.|.+.|.-.+..... . -..+...++ ++|+.+||.+. .++. +.+|||||+|||.||++|
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl-~~L~~vGL~~l~l~r~--------~~~LSgGE~QRv~LA~aL 504 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERL-KFLVDVGLDYLTLSRS--------AGTLSGGEAQRIRLATQI 504 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCCCc--------hhhCCHHHHHHHHHHHHH
Confidence 456899999998544322211 0 011222333 47888999876 6888 455999999999999999
Q ss_pred HhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHH
Q psy2520 145 LTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKD 216 (290)
Q Consensus 145 ~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~ 216 (290)
+.+| ++|||||||+|||+..+..++++|+++ ++.|.|||+|+|++. ++ ..||+|++| .+|++++.|+++
T Consensus 505 ~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L-~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~ 581 (943)
T PRK00349 505 GSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHL-RDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPE 581 (943)
T ss_pred hhCCCCcEEEecCCccCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHH
Confidence 9997 999999999999999999999999999 456999999999974 55 579999999 999999999998
Q ss_pred HHH
Q psy2520 217 AAL 219 (290)
Q Consensus 217 ~~~ 219 (290)
++.
T Consensus 582 e~~ 584 (943)
T PRK00349 582 EIM 584 (943)
T ss_pred HHh
Confidence 864
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.84 E-value=6.6e-21 Score=165.62 Aligned_cols=153 Identities=16% Similarity=0.109 Sum_probs=104.0
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
.++++.+|++++|+|||||||||||++|++..-.. ..|.... . .+..+++..|. +..++..++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~~-~------~~~~i~~~dqi---~~~~~~~d~----- 84 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFVP-A------ESASIPLVDRI---FTRIGAEDS----- 84 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCcc-c------cccccCCcCEE---EEEecCccc-----
Confidence 46788899999999999999999999999543210 1232110 0 11224433221 111111111
Q ss_pred HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHH
Q psy2520 86 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 165 (290)
.... .+.+|.+++| ++.+.+++.+|+++|+||||+|+|+...
T Consensus 85 -----------------------------i~~~--------~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~ 126 (202)
T cd03243 85 -----------------------------ISDG--------RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEG 126 (202)
T ss_pred -----------------------------ccCC--------ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHH
Confidence 1111 2337766665 6666788899999999999999999988
Q ss_pred HHHHH-HHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 166 SKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 166 ~~i~~-~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
..+.. +++.+ .+.+.++|++||+. ++...++++..+..|++...++..
T Consensus 127 ~~l~~~ll~~l-~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~ 175 (202)
T cd03243 127 LAIAYAVLEHL-LEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTG 175 (202)
T ss_pred HHHHHHHHHHH-HhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCC
Confidence 88765 56666 45589999999985 567889999999999988887654
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=6e-20 Score=189.44 Aligned_cols=136 Identities=26% Similarity=0.355 Sum_probs=106.8
Q ss_pred CCCCHHHHHHHHHHhcCchhhhH--H---HHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKA--Y---QRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~--~---~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
-.|||.|.+.|...+........ . .......+.+..+||... .++. +.+|||||+|||.||++|+.
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl~~L~~vgL~~l~l~r~--------~~tLSGGE~QRv~LA~aL~~ 504 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERLGFLIDVGLDYLTLSRA--------AGTLSGGEAQRIRLATQIGS 504 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHhhccccccccCCC--------cCcCCHHHHHHHHHHHHHhh
Confidence 35789888888765432211000 0 011122345778888765 6777 45699999999999999999
Q ss_pred CC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHH
Q psy2520 147 DP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 218 (290)
Q Consensus 147 ~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 218 (290)
+| .+|||||||+|||+..+..++++|++++ +.|.|||+|+|++ +.+ ..||++++| ++|++++.|+++++
T Consensus 505 ~~~~~llILDEPtagLD~~~~~~L~~~L~~L~-~~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 505 GLTGVLYVLDEPSIGLHQRDNERLINTLKRLR-DLGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred CCCCcEEEEcCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHH
Confidence 86 8999999999999999999999999994 5699999999997 455 599999999 89999999999876
Q ss_pred H
Q psy2520 219 L 219 (290)
Q Consensus 219 ~ 219 (290)
.
T Consensus 582 ~ 582 (924)
T TIGR00630 582 L 582 (924)
T ss_pred h
Confidence 4
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=7e-19 Score=159.64 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=63.1
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 128 VVLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
..+|+||||+++||++|+ .+|+++|+||||++||+..+..+++.|+++ + .+++++|+. ..+..+|
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~-~~~~~~~ 255 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDL-ADFDALW 255 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCc-hhccchh
Confidence 448999999999999986 799999999999999999999999999875 2 345555553 3566777
Q ss_pred ---CeEEEEeCCeE
Q psy2520 199 ---DKIILLADSRT 209 (290)
Q Consensus 199 ---d~v~~l~~G~i 209 (290)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999985
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.77 E-value=7.5e-19 Score=153.15 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=93.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEE-EEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACG-FMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig-~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+++.+++|++++|+||||+|||||+++++++.-- .++| || +..++.+++.|++.
T Consensus 20 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--------------------a~~G~~v---pa~~~~l~~~d~I~ 76 (204)
T cd03282 20 NDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--------------------AQIGCFV---PAEYATLPIFNRLL 76 (204)
T ss_pred eeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--------------------HHcCCCc---chhhcCccChhhee
Confidence 478999999999999999999999999999986421 1122 22 33445566777664
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
... +..+...+. .+.+|+|++|+ +.+.+++.+|+++|||||++|+|+
T Consensus 77 ~~~------------------------~~~d~~~~~--------~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 77 SRL------------------------SNDDSMERN--------LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred Eec------------------------CCccccchh--------hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 321 111112222 34499999975 566668899999999999999999
Q ss_pred HHHHHH-HHHHHHHHhcCCcEEEEEeCCC
Q psy2520 163 FSASKL-IRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 163 ~~~~~i-~~~l~~l~~~~g~tii~~tH~~ 190 (290)
.....+ ..+++.+ .+.|.++|++||+.
T Consensus 124 ~~~~~l~~~il~~l-~~~~~~~i~~TH~~ 151 (204)
T cd03282 124 ADGFAISLAILECL-IKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHHHHH-HhcCCEEEEECChH
Confidence 776655 4567777 44589999999985
No 414
>KOG0066|consensus
Probab=99.77 E-value=1e-19 Score=170.01 Aligned_cols=193 Identities=26% Similarity=0.329 Sum_probs=137.6
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcC---CCCCCCCccEEEECCEecCc-----------cccccEEEEccC--
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQR---LPDDCIIDGDIRVNGKPVEG-----------KFRSACGFMYQH-- 68 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~---~~~~~~~~G~I~i~G~~~~~-----------~~~~~ig~v~Q~-- 68 (290)
|.|++|-.|..++++||||-||||||+.|+.+ ++|+ =.|++..+.+.. .-.++..++-.+
T Consensus 282 nA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn----IDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~ 357 (807)
T KOG0066|consen 282 NASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN----IDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAK 357 (807)
T ss_pred ccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC----CceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHH
Confidence 67899999999999999999999999999865 3453 355555554421 001112222111
Q ss_pred ---CCCCCCCCHHHHHHHHH-HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH
Q psy2520 69 ---DLFSPSLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 144 (290)
Q Consensus 69 ---~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL 144 (290)
..--...|+.|-+.-.+ .++... ......++..+|.-+|++..+..++ ...+|||-|.||++||||
T Consensus 358 L~~q~e~Gd~taaErl~~v~~ELraiG---A~sAEarARRILAGLGFskEMQ~rP-------t~kFSGGWRMRvSLARAL 427 (807)
T KOG0066|consen 358 LMSQIEEGDTTAAERLKEVADELRAIG---ADSAEARARRILAGLGFSKEMQERP-------TTKFSGGWRMRVSLARAL 427 (807)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHhc---cccchhHHHHHHhhcCCChhHhcCC-------ccccCCceeeehhHHHHH
Confidence 11123456666554322 222111 1222345567888899876544332 345999999999999999
Q ss_pred HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEE-cCHH
Q psy2520 145 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI-GSKD 216 (290)
Q Consensus 145 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~-g~~~ 216 (290)
...|-+|.|||||+.||......+-+.|..+ + +|+++|+||. .++-..|..|+.|++-++.|+ |+..
T Consensus 428 flEPTLLMLDEPTNHLDLNAVIWLdNYLQgW-k---KTLLIVSHDQ-gFLD~VCtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 428 FLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW-K---KTLLIVSHDQ-GFLDSVCTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred hcCceeeeecCCccccccceeeehhhHHhhh-h---heeEEEeccc-chHHHHHHHHhhhhhhhhhhhcchHH
Confidence 9999999999999999999999999999988 3 5999999996 589999999999999888654 6543
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.75 E-value=3.9e-18 Score=149.94 Aligned_cols=153 Identities=19% Similarity=0.119 Sum_probs=101.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++++...+ ++++|+|||||||||||+++++..-. |+ .|..+.. .+..++++.| +++.+++.+++..
T Consensus 22 n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~~ls~ 88 (216)
T cd03284 22 NDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASDDLAG 88 (216)
T ss_pred eeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeecc-ccceecceee---EeccCCchhhhcc
Confidence 356777766 89999999999999999999875432 21 1222211 1345777754 4666777776654
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHH--HHhCCCeEEEeCC---CC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE--LLTDPALLLCDEP---TT 158 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~a--L~~~p~llllDEP---ts 158 (290)
+. |.=...++.++++ .+.+|+++||||| |+
T Consensus 89 g~---------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 89 GR---------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred Cc---------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 31 1111112233333 3569999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
++|.... ...++..+.+..+.++|++||+. ++.+++|++..+.+|++...+..+++
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 8888653 23344445332378999999984 67889999888888988877766544
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.74 E-value=9.1e-18 Score=152.01 Aligned_cols=139 Identities=20% Similarity=0.270 Sum_probs=97.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
.-++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ++...+++++|.+ +.+.++|.++..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k----- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK----- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH-----
Confidence 568999999999999999999999985 7999999999742 2445567788754 3344555444110
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 168 (290)
..| ..+.+++++|+++|+|||++ ...+
T Consensus 183 ------------------------------------------~~~-----~~~~i~~~~P~villDE~~~------~e~~ 209 (270)
T TIGR02858 183 ------------------------------------------AEG-----MMMLIRSMSPDVIVVDEIGR------EEDV 209 (270)
T ss_pred ------------------------------------------HHH-----HHHHHHhCCCCEEEEeCCCc------HHHH
Confidence 001 12233346999999999974 3445
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCcHH-H-----------HhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 169 IRMMRELTSQRKKTVLCTIHQPSSE-L-----------IDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 169 ~~~l~~l~~~~g~tii~~tH~~~~~-~-----------~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
..+++.+ . .|.++|+++|+.... + ..+|||+++|++|+ ..|+++++
T Consensus 210 ~~l~~~~-~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 210 EALLEAL-H-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHHHHH-h-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 5666665 3 489999999975321 2 25689999999876 55665543
No 417
>KOG0063|consensus
Probab=99.73 E-value=1.4e-17 Score=155.35 Aligned_cols=172 Identities=25% Similarity=0.302 Sum_probs=130.6
Q ss_pred eEEEEeCC-----eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHH
Q psy2520 6 LTGAALSG-----TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 6 is~~~~~G-----e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
..+.|+.| |++..+|.||.|||||+++++|.++|+. .|+|-. -.|+|=||.-.--..-||++.
T Consensus 355 F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p~----------lnVSykpqkispK~~~tvR~l 422 (592)
T KOG0063|consen 355 FCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIPV----------LNVSYKPQKISPKREGTVRQL 422 (592)
T ss_pred EEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCcccc----------cceeccccccCccccchHHHH
Confidence 44555554 6889999999999999999999999962 344432 247888886433344578876
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.--.+ +.......+.++++-+.+++..|.. +.+|||||+|||++|.+|=..+++++.|||.+-|
T Consensus 423 l~~kIr-------~ay~~pqF~~dvmkpL~ie~i~dqe--------vq~lSggelQRval~KOGGKpAdvYliDEpsAyl 487 (592)
T KOG0063|consen 423 LHTKIR-------DAYMHPQFVNDVMKPLQIENIIDQE--------VQGLSGGELQRVALALCLGKPADVYLIDEPSAYL 487 (592)
T ss_pred HHHHhH-------hhhcCHHHHHhhhhhhhHHHHHhHH--------hhcCCchhhHHHHHHHhcCCCCceEEecCchhhc
Confidence 543221 1112234467788888888888888 4459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
|+..+..--..++++--...+|-.+|.||.. ..--++||+++..
T Consensus 488 DSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 488 DSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred ChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 9999998888888864445789999999964 2334789998875
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.68 E-value=5.1e-17 Score=139.46 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=56.7
Q ss_pred CCCChHHHHHHHHHHHHH--hCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 128 VVLSGGERKRLSFATELL--TDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~--~~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
+.+|+|++| +++++. .+|+++|+|||++|+|+.....+. .+++.+.++.+.++|++||++ ++.+++|+.--+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v 134 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV 134 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc
Confidence 448888776 444444 499999999999999999877764 566777432488999999985 577888754444
Q ss_pred eCCeEE
Q psy2520 205 ADSRTA 210 (290)
Q Consensus 205 ~~G~i~ 210 (290)
.+++..
T Consensus 135 ~~~~~~ 140 (185)
T smart00534 135 RNLHMS 140 (185)
T ss_pred eEEEEE
Confidence 444443
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.65 E-value=9.5e-15 Score=137.84 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=65.7
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 128 VVLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
..+|.||+|+++||+.|+ .+|+|+|||||+++||+..+..+++.+.++ +..+++++|+.. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhhhh
Confidence 569999999999999996 699999999999999999999999998764 347899999863 455553
Q ss_pred --CeEEEEeCCeE
Q psy2520 199 --DKIILLADSRT 209 (290)
Q Consensus 199 --d~v~~l~~G~i 209 (290)
++++.|.+|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 57999999986
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.65 E-value=2e-15 Score=132.46 Aligned_cols=124 Identities=23% Similarity=0.227 Sum_probs=85.0
Q ss_pred EEEEeCC--eEEEEECCCCChHHHHHHHHH--cCCCCCCCCccEEEECCEecCccccccEEEEccCCC-CCCCCCHHHHH
Q psy2520 7 TGAALSG--TLVAIMGASGAGKSTLLAALS--QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL-FSPSLTVYEHL 81 (290)
Q Consensus 7 s~~~~~G--e~~~IiGpnGaGKSTLl~~l~--G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~-~~~~lTv~e~l 81 (290)
++.+.++ .+++|+||||+||||||+.++ +.+.. .|...... .-.++|..|... +-...++.++
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~~- 88 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPAD-------SATIGLVDKIFTRMSSRESVSSG- 88 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEcC-------CcEEeeeeeeeeeeCCccChhhc-
Confidence 4455555 789999999999999999998 33332 46554321 224677766421 1111122111
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCC--hHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS--GGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LS--gGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
+| .-+-||+++|++++.+|+++|+|||++|
T Consensus 89 ------------------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~g 120 (213)
T cd03281 89 ------------------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKG 120 (213)
T ss_pred ------------------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCC
Confidence 12 2456899999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhc--CCcEEEEEeCCC
Q psy2520 160 LDSFSASKL-IRMMRELTSQ--RKKTVLCTIHQP 190 (290)
Q Consensus 160 LD~~~~~~i-~~~l~~l~~~--~g~tii~~tH~~ 190 (290)
+|+.....+ ..+++.+.+. .+.++|++||++
T Consensus 121 td~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 121 TDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 999765444 5688888443 135899999996
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.64 E-value=1.3e-16 Score=139.91 Aligned_cols=72 Identities=32% Similarity=0.527 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 130 LSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
||||||.+++||.-|+ ..++++|||||.++||...+..+.++|+++ .+ +.-+|++||+. ..+..+|+.+.+.
T Consensus 137 lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~-~~-~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 137 LSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKEL-SK-QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp S-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHH-TT-TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-cc-ccccccccccc--ccccccccccccc
Confidence 9999999999998775 577899999999999999999999999998 43 47899999984 5788999887654
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.62 E-value=7.5e-16 Score=157.35 Aligned_cols=128 Identities=24% Similarity=0.226 Sum_probs=88.5
Q ss_pred eEEEEeCC-eEEEEECCCCChHHHHHHHHHcC-CCCCCCCccE-EEECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 6 LTGAALSG-TLVAIMGASGAGKSTLLAALSQR-LPDDCIIDGD-IRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 6 is~~~~~G-e~~~IiGpnGaGKSTLl~~l~G~-~~~~~~~~G~-I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
+++.+.++ ++++|+||||+||||||++++|. +.+. .|. |... ....++|+.|...
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq---~G~~Vpa~-------~~~~~~~~d~i~~------------ 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ---SGIPIPAN-------EHSEIPYFEEIFA------------ 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH---hCCCccCC-------ccccccchhheee------------
Confidence 57888877 99999999999999999999987 2331 231 1100 0011222222100
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
.+. . . +.+. .. .+.+|+|+++++.|++.+ .+|+++|+|||++|+||
T Consensus 372 ---~i~--~----~------~si~----------~~--------LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~ 417 (771)
T TIGR01069 372 ---DIG--D----E------QSIE----------QN--------LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDP 417 (771)
T ss_pred ---ecC--h----H------hHHh----------hh--------hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCH
Confidence 000 0 0 0011 11 344999999999998876 89999999999999999
Q ss_pred HHHHHH-HHHHHHHHhcCCcEEEEEeCCC
Q psy2520 163 FSASKL-IRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 163 ~~~~~i-~~~l~~l~~~~g~tii~~tH~~ 190 (290)
.....+ ..++..+ .+.|.++|++||+.
T Consensus 418 ~eg~ala~aiLe~l-~~~g~~viitTH~~ 445 (771)
T TIGR01069 418 DEGSALAISILEYL-LKQNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHHHHH-HhcCCEEEEECChH
Confidence 999998 5778887 45689999999985
No 423
>KOG0063|consensus
Probab=99.59 E-value=4.3e-15 Score=138.91 Aligned_cols=176 Identities=20% Similarity=0.229 Sum_probs=118.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEE--------cc---CCCCCCCCCHHH
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM--------YQ---HDLFSPSLTVYE 79 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v--------~Q---~~~~~~~lTv~e 79 (290)
.||++.+++|.||-||||-|++++|..+|+. |.- +....|...++|. |+ ++.+-.. .=.+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl---g~~-----~~pp~w~~il~~frgselq~yftk~le~~lk~~-~kpQ 168 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRY-----DNPPDWQEILTYFRGSELQNYFTKILEDNLKAI-IKPQ 168 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC---CCC-----CCCcchHHHhhhhhhHHHhhhhhhhccccccCc-CChH
Confidence 5799999999999999999999999999852 321 1111111112211 01 0000000 0011
Q ss_pred HHHHHHH-hcC--chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 80 HLYFMAL-LKL--DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 80 ~l~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
++....+ .+. ..............++++.+.|.+..++. +..|||||-||.+||.+.+++.++.++|||
T Consensus 169 yvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re--------~~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 169 YVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDRE--------VEQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhh--------hhhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 1111110 000 00111111122346778888888888888 445999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
.+.||...+..-...++.+ -..+.=||+|.||++ .+.-+.|-+..+.
T Consensus 241 SsYLDVKQRLkaA~~IRsl-~~p~~YiIVVEHDLs-VLDylSDFiCcLY 287 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSL-INPDRYIIVVEHDLS-VLDYLSDFICCLY 287 (592)
T ss_pred cccchHHHhhhHHHHHHHh-hCCCCeEEEEEeech-HHHhhhcceeEEe
Confidence 9999999999999999999 456788999999973 4555678888876
No 424
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.54 E-value=7.2e-15 Score=128.46 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=43.6
Q ss_pred CChH--HHHHHHHHHHHHhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHH
Q psy2520 130 LSGG--ERKRLSFATELLTDPALLLCDEPT-----TGLDSFSASKLIRMMRELT 176 (290)
Q Consensus 130 LSgG--qrqRv~ia~aL~~~p~llllDEPt-----sgLD~~~~~~i~~~l~~l~ 176 (290)
.||+ |++++.||++++.+|+++++|||| ++||+..+..+.+.+++++
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 4444 999999999999999999999999 9999999999999999984
No 425
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.51 E-value=5.4e-14 Score=139.92 Aligned_cols=77 Identities=25% Similarity=0.425 Sum_probs=69.4
Q ss_pred CCCChHHHHHHHHHHHHHhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 128 VVLSGGERKRLSFATELLTD----PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~~----p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
..|||||+||++||++++.. |++|||||||+|||+.++..+.+.|++++ + +.+||++||++ .+..+||++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~-~~~vi~iTH~~--~~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-E-RHQVLCVTHLP--QVAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEEChH--HHHHhcCeEEE
Confidence 46899999999999999985 69999999999999999999999999994 4 79999999997 34579999999
Q ss_pred EeCCe
Q psy2520 204 LADSR 208 (290)
Q Consensus 204 l~~G~ 208 (290)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98764
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.51 E-value=2.3e-13 Score=120.11 Aligned_cols=135 Identities=17% Similarity=0.173 Sum_probs=84.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHc-CCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G-~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.++++.+.+|++++|+||||+||||||+++++ .+.+ ..|..... ... .++|..| ++..+...|++.
T Consensus 22 n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a-~~~------~~~~~~~---i~~~~~~~d~~~ 88 (222)
T cd03287 22 NDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPA-SSA------TLSIFDS---VLTRMGASDSIQ 88 (222)
T ss_pred EeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEc-Cce------EEeccce---EEEEecCccccc
Confidence 47899999999999999999999999999999 3344 25665432 211 2333222 111111111111
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCC--hHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS--GGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LS--gGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
-+ +| ..|-++++-+..-+.+|+++|+|||.+|.
T Consensus 89 ~~---------------------------------------------~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 89 HG---------------------------------------------MSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred cc---------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 00 11 11223333333335689999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 161 DSFSASKL-IRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 161 D~~~~~~i-~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
|+.....+ ..+++.+.+..+.++|++||++ ++..+.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 87776664 5677777443488999999996 344544
No 427
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.50 E-value=3e-14 Score=111.21 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=57.7
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHH
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
-++++|.+++|++++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ .++ .|++
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~-lf~--~ti~ 72 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL-GLE--IRLR 72 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh-cch--hhHH
Confidence 47899999999999999999999999999986 3899999998853 345667788776 333 4899
Q ss_pred HHHHH
Q psy2520 79 EHLYF 83 (290)
Q Consensus 79 e~l~~ 83 (290)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99987
No 428
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.49 E-value=1.3e-13 Score=123.61 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=61.6
Q ss_pred CCChHH--------HHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcC
Q psy2520 129 VLSGGE--------RKRLSFATELLTDPALLLCDEPTTGLDSFSASK-LIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 199 (290)
Q Consensus 129 ~LSgGq--------rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~-i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d 199 (290)
.+|||+ +||+++||++..+++|.+| ||+.+|+.+... ++ +..+ +..+.|.|+.+|++ .....+|
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~-~~~~~~~ivls~~l--a~~~~~p 201 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEF-KGTGNMELVLDRRL--AERRIFP 201 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHH-hcCCCcEEEEchHH--hhCCCCC
Confidence 389999 9999999999899999999 999999655544 54 5555 32467999999986 3467899
Q ss_pred eEEEEeCCeE
Q psy2520 200 KIILLADSRT 209 (290)
Q Consensus 200 ~v~~l~~G~i 209 (290)
.|.+|+.|.+
T Consensus 202 aI~vl~s~sr 211 (249)
T cd01128 202 AIDILKSGTR 211 (249)
T ss_pred eEEEcCCCCc
Confidence 9999999987
No 429
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=1.2e-13 Score=146.35 Aligned_cols=79 Identities=23% Similarity=0.219 Sum_probs=72.4
Q ss_pred CCCCChHHHHHHHHHHHHHh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh
Q psy2520 127 KVVLSGGERKRLSFATELLT----------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 196 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~~----------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~ 196 (290)
+..|||||++||+||+||+. +|++||+||||++||+.+...+++.|..+. ..|++|+||||++ .....
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~-~~g~~i~iisH~~-~~~~~ 1025 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIR-EGSKMIGIISHVP-EFRER 1025 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCcH-HHHHh
Confidence 56799999999999999986 799999999999999999999999999995 4689999999997 57888
Q ss_pred hcCeEEEEeCC
Q psy2520 197 MFDKIILLADS 207 (290)
Q Consensus 197 ~~d~v~~l~~G 207 (290)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
No 430
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.48 E-value=7.5e-14 Score=138.61 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=68.7
Q ss_pred CCCCChHHHHHHHHHHHHH----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHH
Q psy2520 127 KVVLSGGERKRLSFATELL----------TDPALLLCDEPT-TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 195 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~----------~~p~llllDEPt-sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~ 195 (290)
+..||||||||++||++|+ .+|+++|||||| ++||+.++..+.+.|.++ .|.|||++||++ ...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~--~~~ 540 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKD--HDP 540 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECch--hch
Confidence 4679999999999999987 599999999998 789999999999999987 378999999996 356
Q ss_pred hhcCeEEEEeC-CeE
Q psy2520 196 DMFDKIILLAD-SRT 209 (290)
Q Consensus 196 ~~~d~v~~l~~-G~i 209 (290)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 543
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.48 E-value=4.6e-14 Score=144.64 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=62.8
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
.+.+|+||+|++.|++++ .+|+++|+|||++|+||.....+.. ++..+ .+.|.++|++||++ ......+++..++
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l-~~~~~~vIitTH~~-el~~~~~~~~~v~- 463 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYL-RKRGAKIIATTHYK-ELKALMYNREGVE- 463 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH-HHCCCEEEEECChH-HHHHHHhcCCCeE-
Confidence 345999999999999988 8999999999999999999988854 67777 45689999999995 3333345554443
Q ss_pred CCeEEE
Q psy2520 206 DSRTAF 211 (290)
Q Consensus 206 ~G~i~~ 211 (290)
++.+.+
T Consensus 464 ~~~~~~ 469 (782)
T PRK00409 464 NASVEF 469 (782)
T ss_pred EEEEEE
Confidence 455544
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.47 E-value=1.7e-13 Score=135.78 Aligned_cols=75 Identities=25% Similarity=0.511 Sum_probs=68.4
Q ss_pred CCChHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 129 VLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 129 ~LSgGqrqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
.|||||+|||+||++++. +|+++|||||++|||+.++..+.+.|+++ ++ +.+||+|||++ .+..+||+.+.+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l-~~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL-GE-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-hc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 489999999999999997 68999999999999999999999999999 44 68999999997 356899999999
Q ss_pred eCC
Q psy2520 205 ADS 207 (290)
Q Consensus 205 ~~G 207 (290)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 875
No 433
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.47 E-value=2e-12 Score=124.47 Aligned_cols=166 Identities=20% Similarity=0.219 Sum_probs=108.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec---Cc---------cccccEEEEccCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EG---------KFRSACGFMYQHDLF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~---~~---------~~~~~ig~v~Q~~~~ 71 (290)
+++ +.+.+|++++|+|+||+|||||+++|+|..+++ .|.|.+.|+.- .. .+++.+.++.+.+.
T Consensus 150 d~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~- 224 (438)
T PRK07721 150 DSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ- 224 (438)
T ss_pred hee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC-
Confidence 345 899999999999999999999999999999884 79999865443 21 24567888876432
Q ss_pred CCCCCHHHHH--HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC--ccCcccCCcCCCCCCCCChHHHHHHHHH-HHHHh
Q psy2520 72 SPSLTVYEHL--YFMALLKLDRRVKAYQRIALINSLLIELGLMN--SQHTRIGSSSITQKVVLSGGERKRLSFA-TELLT 146 (290)
Q Consensus 72 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~v~~~~~~~~~~LSgGqrqRv~ia-~aL~~ 146 (290)
++.+-+ .+.+ -.+.+.+...|-.- ..|. |+ |.+-| |.+.
T Consensus 225 ----~~~~r~~~~~~a--------------~~iAEyfr~~g~~Vll~~Ds------------lt-----r~A~A~rEis- 268 (438)
T PRK07721 225 ----PALMRIKGAYTA--------------TAIAEYFRDQGLNVMLMMDS------------VT-----RVAMAQREIG- 268 (438)
T ss_pred ----CHHHHHHHHHHH--------------HHHHHHHHHCCCcEEEEEeC------------hH-----HHHHHHHHHH-
Confidence 111111 1110 00112222222110 0111 11 11111 1111
Q ss_pred CCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 147 DPALLLCDEP--TTGLDSFSASKLIRMMRELTS-QRKK-----TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 147 ~p~llllDEP--tsgLD~~~~~~i~~~l~~l~~-~~g~-----tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
+.+.|| |+|+||.....+.+++.++.. +.|. ||++.+||+. ..+||++..|.+|+++.+++..+
T Consensus 269 ----l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 ----LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ----HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccHHH
Confidence 112454 789999999999999999853 3575 9999999985 37899999999999999987763
No 434
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.44 E-value=5.6e-13 Score=115.94 Aligned_cols=62 Identities=37% Similarity=0.579 Sum_probs=52.5
Q ss_pred CCCChHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 128 VVLSGGERKRLSFATELLTDP---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
..+|.|++|.+.|+..|...+ .++++|||-++|+|..+..++++|+..+. .+..+|++||.|
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp 299 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSP 299 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-G
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccc
Confidence 447999999999999998777 89999999999999999999999988843 578999999987
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.43 E-value=1.3e-12 Score=111.11 Aligned_cols=78 Identities=17% Similarity=0.052 Sum_probs=63.2
Q ss_pred CCCCChHHHH------HHHHHHHHHhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH-----
Q psy2520 127 KVVLSGGERK------RLSFATELLTDPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCTIHQPSS----- 192 (290)
Q Consensus 127 ~~~LSgGqrq------Rv~ia~aL~~~p~llllDEPtsgLD---~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~----- 192 (290)
+..+|+|++| ......+...+|+++++|||++.+| ...+..+.++++.++ +.|.|+|+++|+...
T Consensus 69 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~-~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 69 PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALK-RFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHH-HCCCEEEEEeccccCCCccc
Confidence 4459999998 5555555678999999999999999 888888899999984 458999999998532
Q ss_pred ---HHHhhcCeEEEEe
Q psy2520 193 ---ELIDMFDKIILLA 205 (290)
Q Consensus 193 ---~~~~~~d~v~~l~ 205 (290)
.+..+||.++.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 1567899999887
No 436
>PRK13695 putative NTPase; Provisional
Probab=99.40 E-value=1.6e-13 Score=116.31 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 129 VLSGGERKRLSFATELLTDPALLLCDEP--TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 129 ~LSgGqrqRv~ia~aL~~~p~llllDEP--tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
.+||+++-++.+++..+.+|+++++||| +.++|+. +.+.+..+. +.|.++|+++|+. .+..++|++..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~-~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVL-DSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHH-hCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 4999999999999999999999999995 4455543 456666653 4578999999983 56788999999999
Q ss_pred CeEEEE
Q psy2520 207 SRTAFI 212 (290)
Q Consensus 207 G~i~~~ 212 (290)
|++...
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 988654
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.40 E-value=2.3e-12 Score=114.34 Aligned_cols=151 Identities=21% Similarity=0.280 Sum_probs=90.6
Q ss_pred EEEEeCCeEEEEECCCCChHHHH-HHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTL-LAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTL-l~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
++-+++|++++|+|||||||||| ++++++..++. +. +.|+..+ .+..+.+....
T Consensus 18 ~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~----------------~~yi~~e------~~~~~~~~~~~ 72 (230)
T PRK08533 18 GGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNG---YS----------------VSYVSTQ------LTTTEFIKQMM 72 (230)
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC---Cc----------------EEEEeCC------CCHHHHHHHHH
Confidence 45688999999999999999999 78989876542 11 3343321 24444444432
Q ss_pred HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH----hCCCeEEEeCCCCCC-
Q psy2520 86 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL----TDPALLLCDEPTTGL- 160 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~----~~p~llllDEPtsgL- 160 (290)
.+... . +++... +.-...+- ...+|+++.++..+.+.+- .+|+++++||||+++
T Consensus 73 ~~g~~--~---------~~~~~~-~~l~~~~~---------~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~ 131 (230)
T PRK08533 73 SLGYD--I---------NKKLIS-GKLLYIPV---------YPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLIS 131 (230)
T ss_pred HhCCc--h---------HHHhhc-CcEEEEEe---------cccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhc
Confidence 22110 0 111111 10000010 0126777666655555443 369999999999999
Q ss_pred ---CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHH-------HHhhcCeEEEEe
Q psy2520 161 ---DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE-------LIDMFDKIILLA 205 (290)
Q Consensus 161 ---D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~-------~~~~~d~v~~l~ 205 (290)
|+.....+++.++.++ +.|.|+++++|. ... +..++|-|+.|.
T Consensus 132 ~~~d~~~~~~l~~~l~~l~-~~g~tvi~t~~~-~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 132 NDASEVAVNDLMAFFKRIS-SLNKVIILTANP-KELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred CCcchHHHHHHHHHHHHHH-hCCCEEEEEecc-cccccccceeEEEeeeEEEEEE
Confidence 8888899999999984 457777665553 210 123456677665
No 438
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.39 E-value=8.1e-12 Score=124.81 Aligned_cols=137 Identities=27% Similarity=0.385 Sum_probs=103.3
Q ss_pred CCCCHHHHHHHHHHhcCchhh--hHHHHHHHH---HHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 73 PSLTVYEHLYFMALLKLDRRV--KAYQRIALI---NSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~--~~~~~~~~~---~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
..|++.+.+.|+..+...... ......+.+ ...|..+||.-. +++. ...|||||.||+-||..+=.
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~--------a~TLSGGEaQRIRLAtqiGS 498 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRS--------AGTLSGGEAQRIRLATQIGS 498 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCccccccc--------CCCcChhHHHHHHHHHHhcc
Confidence 446777877777665432211 111111111 234556788654 4555 45699999999999999854
Q ss_pred C--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHH
Q psy2520 147 D--PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 218 (290)
Q Consensus 147 ~--p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 218 (290)
+ -=+++||||+.||-+..-.++++.|+++ ++.|-|+|+|.||. +....||+|+-| +.|+|++.|+++++
T Consensus 499 ~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~L-RDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i 575 (935)
T COG0178 499 GLTGVLYVLDEPSIGLHQRDNERLIETLKRL-RDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEEL 575 (935)
T ss_pred cceeeEEEecCCccCCChhhHHHHHHHHHHH-HhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHH
Confidence 3 3578999999999999999999999999 67799999999994 678999999987 56899999999998
Q ss_pred HH
Q psy2520 219 LA 220 (290)
Q Consensus 219 ~~ 220 (290)
+.
T Consensus 576 ~~ 577 (935)
T COG0178 576 LA 577 (935)
T ss_pred Hh
Confidence 74
No 439
>PRK03918 chromosome segregation protein; Provisional
Probab=99.36 E-value=1.6e-12 Score=135.49 Aligned_cols=77 Identities=34% Similarity=0.419 Sum_probs=66.8
Q ss_pred CCCCChHHHHH------HHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCe
Q psy2520 127 KVVLSGGERKR------LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 200 (290)
Q Consensus 127 ~~~LSgGqrqR------v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~ 200 (290)
+..|||||+|+ ++||++++.+|+++||||||++||+..+..+.++|..+. ..+.+||++||++ .+...||+
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~-~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYL-RKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHH-hcCCEEEEEECCH--HHHHhCCe
Confidence 56799999995 555567889999999999999999999999999999984 4478999999996 46789999
Q ss_pred EEEEeC
Q psy2520 201 IILLAD 206 (290)
Q Consensus 201 v~~l~~ 206 (290)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
No 440
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.35 E-value=1.5e-12 Score=114.61 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=83.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+++..++|++++|+||||+|||||++++++..--. ..|. .+... ...++++ +.++..+...|++..
T Consensus 21 ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G~------~vpa~-~~~i~~~---~~i~~~~~~~d~~~~ 88 (218)
T cd03286 21 NDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMGM------DVPAK-SMRLSLV---DRIFTRIGARDDIMK 88 (218)
T ss_pred eeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcCC------ccCcc-ccEeccc---cEEEEecCccccccc
Confidence 5789999999999999999999999999998753210 0121 11000 0112211 111222222222221
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+.. .+. .|-++++-....+.+|+++|+|||++|+|+.
T Consensus 89 ~~S------------------------------------------tF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~ 125 (218)
T cd03286 89 GES------------------------------------------TFM-VELSETANILRHATPDSLVILDELGRGTSTH 125 (218)
T ss_pred Ccc------------------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCch
Confidence 100 000 1223333333335689999999999999999
Q ss_pred HHHHHHHH-HHHHHhcCCcEEEEEeCCCcHHHHhh
Q psy2520 164 SASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDM 197 (290)
Q Consensus 164 ~~~~i~~~-l~~l~~~~g~tii~~tH~~~~~~~~~ 197 (290)
....+... ++.+.+..+.++|++||++ ..+..+
T Consensus 126 dg~~la~ail~~L~~~~~~~~i~~TH~~-el~~~~ 159 (218)
T cd03286 126 DGYAIAHAVLEYLVKKVKCLTLFSTHYH-SLCDEF 159 (218)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccH-HHHHHh
Confidence 99888887 7777433389999999996 334444
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.34 E-value=4.7e-12 Score=117.12 Aligned_cols=141 Identities=19% Similarity=0.255 Sum_probs=94.5
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe-cCccccccEEEEccCCC-CCCCCCHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP-VEGKFRSACGFMYQHDL-FSPSLTVYEHLYFM 84 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~-~~~~~~~~ig~v~Q~~~-~~~~lTv~e~l~~~ 84 (290)
++.++.|+.++|+||+|||||||+++|++.+++. .|.+.+.... +....+..+.++.+... -...
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~---------- 204 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGGQGLAK---------- 204 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCCCCcCc----------
Confidence 4567789999999999999999999999999874 5777774311 00001122222222100 0000
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
.+- .-.++.+|.++|+++++|||.+
T Consensus 205 ---------------------------------------------~~~----~~~l~~~Lr~~pd~ii~gE~r~------ 229 (308)
T TIGR02788 205 ---------------------------------------------VTP----KDLLQSCLRMRPDRIILGELRG------ 229 (308)
T ss_pred ---------------------------------------------cCH----HHHHHHHhcCCCCeEEEeccCC------
Confidence 111 1134556778999999999996
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.+.+++++.+. ..+.+++.++|..+ +....+|+..|..|++...|.+.+.+
T Consensus 230 -~e~~~~l~a~~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 230 -DEAFDFIRAVN-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred -HHHHHHHHHHh-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 34567777773 32345799999964 67779999999999988888877665
No 442
>PRK01156 chromosome segregation protein; Provisional
Probab=99.32 E-value=5.8e-12 Score=131.71 Aligned_cols=77 Identities=30% Similarity=0.369 Sum_probs=66.3
Q ss_pred CCCCChHHHHHHHH------HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-C-cEEEEEeCCCcHHHHhhc
Q psy2520 127 KVVLSGGERKRLSF------ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR-K-KTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 127 ~~~LSgGqrqRv~i------a~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~-g-~tii~~tH~~~~~~~~~~ 198 (290)
+..|||||++|++| |++|+.+|++++|||||++||+..+..+.++|....+.. | .+||++||++ .+...|
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~~ 876 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSVA 876 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHhc
Confidence 56799999999976 489999999999999999999999999999998643433 3 4899999996 356899
Q ss_pred CeEEEEe
Q psy2520 199 DKIILLA 205 (290)
Q Consensus 199 d~v~~l~ 205 (290)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 443
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.32 E-value=1.7e-11 Score=103.87 Aligned_cols=76 Identities=21% Similarity=0.391 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCe
Q psy2520 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSR 208 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~ 208 (290)
.|-||-=.--+.+. .++.-++|||||-++|.|.-+..++.+|++++ +.|..+|++||.|. +..+ --.|+-++.+.
T Consensus 130 ~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la-~sGaQ~IiATHSPi--LlAiP~A~I~~~~~~g 205 (233)
T COG3910 130 MSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLA-DSGAQIIIATHSPI--LLAIPGAEIYEISESG 205 (233)
T ss_pred hccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHH-hcCCeEEEEecChh--heeCCCcEEEEEecCC
Confidence 78888654444444 45678999999999999999999999999994 56899999999984 3333 35677777664
Q ss_pred E
Q psy2520 209 T 209 (290)
Q Consensus 209 i 209 (290)
+
T Consensus 206 ~ 206 (233)
T COG3910 206 I 206 (233)
T ss_pred c
Confidence 3
No 444
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.31 E-value=6.7e-12 Score=132.87 Aligned_cols=78 Identities=24% Similarity=0.150 Sum_probs=68.8
Q ss_pred CCCCChHHHHHHHHHHHHHh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 127 KVVLSGGERKRLSFATELLT--------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~~--------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
+..|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+ ++.|+||++|||.. ....++.
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l-~~~g~~v~iisH~~-~l~~~i~ 1024 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDAL-NASGKTIGVISHVE-AMKERIP 1024 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-HHCCCEEEEEecHH-HHHHhcc
Confidence 56799999999999999996 89999999999999999999999999999 45699999999975 4555667
Q ss_pred CeEEEEeC
Q psy2520 199 DKIILLAD 206 (290)
Q Consensus 199 d~v~~l~~ 206 (290)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 77777764
No 445
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=9.4e-12 Score=134.60 Aligned_cols=71 Identities=25% Similarity=0.306 Sum_probs=62.5
Q ss_pred CCCCChHHHH------HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEeCCCcHHHHh
Q psy2520 127 KVVLSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS----QRKKTVLCTIHQPSSELID 196 (290)
Q Consensus 127 ~~~LSgGqrq------Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~----~~g~tii~~tH~~~~~~~~ 196 (290)
.+.||||||| |++||++|+.+|++|+|||||+|||+.+...+.+.|..+.. ..|.+||++||++ .++..
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~ 1275 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVEL 1275 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHH
Confidence 3459999999 99999999999999999999999999999999999988732 2478999999997 57777
Q ss_pred hc
Q psy2520 197 MF 198 (290)
Q Consensus 197 ~~ 198 (290)
+|
T Consensus 1276 ~~ 1277 (1311)
T TIGR00606 1276 LG 1277 (1311)
T ss_pred Hh
Confidence 65
No 446
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.25 E-value=2.3e-11 Score=100.03 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 130 LSGGERKRLSFATELLTDPALLLCDEPTT----------GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~~p~llllDEPts----------gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
.+.++.+++..+++...+|+++++|||++ +.|......+.+++... ++.+.|+|+++|...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~ 138 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPS 138 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCC
Confidence 45666677888889999999999999995 45555556666666665 556999999999864
No 447
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.25 E-value=1.8e-10 Score=119.27 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=59.4
Q ss_pred HhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHH---------hhcCeEEEEeCCeEEEEcC
Q psy2520 145 LTDPALLLCDEPTTGL-DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI---------DMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 145 ~~~p~llllDEPtsgL-D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~---------~~~d~v~~l~~G~i~~~g~ 214 (290)
..+|+++++|||+.+| |+..+..+.+.++.+ ++.|.+++++||++. ++. ..|+++++|.+|++...+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~-RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVL-RKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 4799999999999999 799999999999999 456889999999984 444 5799999999999876654
Q ss_pred H
Q psy2520 215 K 215 (290)
Q Consensus 215 ~ 215 (290)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
No 448
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.23 E-value=1.8e-11 Score=130.33 Aligned_cols=75 Identities=17% Similarity=0.347 Sum_probs=65.9
Q ss_pred CCCCChHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE
Q psy2520 127 KVVLSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 202 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~ 202 (290)
+..|||||++|++||++++ ..|+++||||||++||+.++..+.++|+.++ + +.++|+|||++. ...+||+++
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~-~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFS-K-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhc-c-CCEEEEEEcChh--HHHHhhhHe
Confidence 5679999999999999985 5779999999999999999999999999984 4 478999999974 457899998
Q ss_pred EEe
Q psy2520 203 LLA 205 (290)
Q Consensus 203 ~l~ 205 (290)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.18 E-value=1.2e-10 Score=111.54 Aligned_cols=148 Identities=20% Similarity=0.106 Sum_probs=103.8
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
..+.+.+|+.++|+|+||+|||||+++|++..+++ .|.|.+.|+.- .+|.|.+....
T Consensus 149 ~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg--------------------~ev~e~~~~~l 205 (432)
T PRK06793 149 SMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERG--------------------REVKDFIRKEL 205 (432)
T ss_pred ccceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCc--------------------ccHHHHHHHHh
Confidence 45899999999999999999999999999998874 57666555431 35666544221
Q ss_pred HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH-------hCCCeEEEeCCCC
Q psy2520 86 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-------TDPALLLCDEPTT 158 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~-------~~p~llllDEPts 158 (290)
.. -++... ..+-. ..+.|.|+|+|++.+.+.+ .++-++++|+||.
T Consensus 206 ~~---------------------~gl~~t--vvv~~-----tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 206 GE---------------------EGMRKS--VVVVA-----TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred hh---------------------ccccee--EEEEE-----CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 11 111100 00111 3568999999999999887 7999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEE
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 212 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~ 212 (290)
..|+. +++-..+.+... .|.+..+.+|. . ++++|......|.|...
T Consensus 258 ~a~A~--reisl~~~e~p~-~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~ 303 (432)
T PRK06793 258 FADAR--RSVDIAVKELPI-GGKTLLMESYM-K----KLLERSGKTQKGSITGI 303 (432)
T ss_pred HHHHH--HHHHHHhcCCCC-CCeeeeeeccc-h----hHHHHhccCCCcceEEE
Confidence 99996 666666666633 48888888883 2 34444444578887544
No 450
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.15 E-value=9e-11 Score=125.27 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=67.5
Q ss_pred CCCCChHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE
Q psy2520 127 KVVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 202 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~ 202 (290)
+..||||||++++||++|+. .|+++|||||+++||+..+..+.++|..+ .. +.++|++||++ ....+||+++
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~-~~-~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREK-AG-EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHh-cC-CCeEEEEECcH--HHHHhcceeE
Confidence 56799999999999999985 67999999999999999999999999998 43 47899999996 4668999998
Q ss_pred EEeC
Q psy2520 203 LLAD 206 (290)
Q Consensus 203 ~l~~ 206 (290)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8764
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.14 E-value=3e-10 Score=98.54 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 139 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 139 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
+++++|..+|+++++|||. |+.... ..++ . ...|..++.++|..+ .....+|++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~---~~l~-~-a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIR---LALT-A-AETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHH---HHHH-H-HHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778888999999999996 555433 3333 3 235889999999963 457789987774
No 452
>PRK02224 chromosome segregation protein; Provisional
Probab=99.13 E-value=1.6e-10 Score=120.75 Aligned_cols=78 Identities=28% Similarity=0.423 Sum_probs=66.1
Q ss_pred CCCCChHHHH------HHHHHHHHHhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEeCCCcHH
Q psy2520 127 KVVLSGGERK------RLSFATELLTD-----P-ALLLCDEPTTGLDSFSASKLIRMMRELTSQRK-KTVLCTIHQPSSE 193 (290)
Q Consensus 127 ~~~LSgGqrq------Rv~ia~aL~~~-----p-~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g-~tii~~tH~~~~~ 193 (290)
+..||||||+ |+++|++++.+ | +++||||||++||+..+..+.++|..+. ..| .+||++||++.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~-~~~~~qviiish~~~-- 855 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMR-RLGVEQIVVVSHDDE-- 855 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHH-hcCCCeEEEEECChH--
Confidence 5679999999 89999998864 3 6799999999999999999999999984 445 48999999973
Q ss_pred HHhhcCeEEEEeCC
Q psy2520 194 LIDMFDKIILLADS 207 (290)
Q Consensus 194 ~~~~~d~v~~l~~G 207 (290)
....||+++.|...
T Consensus 856 ~~~~ad~~~~~~~~ 869 (880)
T PRK02224 856 LVGAADDLVRVEKD 869 (880)
T ss_pred HHHhcCeeEEeecC
Confidence 45789999999643
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.12 E-value=3.2e-09 Score=94.16 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHHHHHh--CCCeEEEeCCCCC---CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH------HHHhhc
Q psy2520 130 LSGGERKRLSFATELLT--DPALLLCDEPTTG---LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS------ELIDMF 198 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~--~p~llllDEPtsg---LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~------~~~~~~ 198 (290)
.|.++.+.+..+..++. +|+++++||||+. .|......++..++.++ +.|.|+++++|+... .+..++
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~-~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLV-DLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 67889999999999987 9999999999964 55555566666677764 458899999997531 145567
Q ss_pred CeEEEEeC
Q psy2520 199 DKIILLAD 206 (290)
Q Consensus 199 d~v~~l~~ 206 (290)
|-++.|..
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 77777763
No 454
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.05 E-value=1e-10 Score=112.41 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=47.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc-EEEECCEecCc---cccccEEEEccC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG-DIRVNGKPVEG---KFRSACGFMYQH 68 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G-~I~i~G~~~~~---~~~~~ig~v~Q~ 68 (290)
.+||+++.+||+++|+|||||||||||+ +|+..|. +| +|.++|.++.. .....+-+|||+
T Consensus 23 ~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~ 86 (504)
T TIGR03238 23 VKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHSFSPNKNAMETLDEIFDG 86 (504)
T ss_pred hCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEECCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999999 7777774 56 89999999853 111112278885
No 455
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.03 E-value=1.3e-09 Score=97.14 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=40.1
Q ss_pred HHhCCCeEEEeCCCCC------CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 144 LLTDPALLLCDEPTTG------LDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 144 L~~~p~llllDEPtsg------LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
...+|+++++| |+++ +|+.....+++.|++++++.|.+||+++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7754 7999999999999999777799999999985
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.01 E-value=1.9e-08 Score=79.44 Aligned_cols=119 Identities=29% Similarity=0.382 Sum_probs=77.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCch
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR 91 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~ 91 (290)
++..+.|+||+|+||||+++.|+..+.... .+-+.++....... +..+...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~------------------~~~~~~~--------- 51 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEE------------------VLDQLLL--------- 51 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEcccc------------------CHHHHHh---------
Confidence 367899999999999999999999877520 13445544332110 0000000
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-
Q psy2520 92 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR- 170 (290)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~- 170 (290)
. ..... .....+++..+..++++-..+|.++++||+..-.+.........
T Consensus 52 ------------~---------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~ 102 (148)
T smart00382 52 ------------I---------IVGGK--------KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLL 102 (148)
T ss_pred ------------h---------hhhcc--------CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhh
Confidence 0 00000 12367788888888888888899999999999999988877664
Q ss_pred ----HHHHHHhcCCcEEEEEeC
Q psy2520 171 ----MMRELTSQRKKTVLCTIH 188 (290)
Q Consensus 171 ----~l~~l~~~~g~tii~~tH 188 (290)
.........+..+|+++|
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 103 EELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred hhhHHHHHHHhcCCCEEEEEeC
Confidence 122222345778888888
No 457
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.98 E-value=2.3e-09 Score=104.14 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=89.7
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 84 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~ 84 (290)
+.+..+..|++++++|||||||||++..|++.+... .|. ++|+++.++. ...+++|+|.++
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~-------------~kV~LI~~Dt---~RigA~EQLr~~ 308 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA-------------SKVALLTTDS---YRIGGHEQLRIY 308 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC-------------CeEEEEeCCc---cchhHHHHHHHH
Confidence 345567789999999999999999999999977542 342 2478888875 346899999988
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHH-HHHHHHHHHhCC-----CeEEEeCCCC
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK-RLSFATELLTDP-----ALLLCDEPTT 158 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrq-Rv~ia~aL~~~p-----~llllDEPts 158 (290)
+........... ...+......++.+.....|.+ ...+++. .+.-..+++.++ .+|+||.++.
T Consensus 309 AeilGVpv~~~~---~~~Dl~~aL~~L~d~d~VLIDT--------aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 309 GKILGVPVHAVK---DAADLRLALSELRNKHIVLIDT--------IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHhCCCeeccC---CchhHHHHHHhccCCCeEEeCC--------CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 765432211111 1122334445666655555433 3323322 233344444454 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeC
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIH 188 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH 188 (290)
+ ..+.+.++.+ +..+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f-~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAY-RGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHh-ccCCCCEEEEeC
Confidence 7 3445555555 334555555554
No 458
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.95 E-value=2.4e-09 Score=91.83 Aligned_cols=78 Identities=22% Similarity=0.197 Sum_probs=58.4
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCC--CCCCCCCHHHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHD--LFSPSLTVYEHLYFM 84 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~--~~~~~lTv~e~l~~~ 84 (290)
+.+++|+.++|+||||||||||+++|+|+++|+ .|.|.+.+..-.. ..+..+++++|.+ ...+..++.+.+...
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHH
Confidence 457889999999999999999999999999874 6999997743211 2234567776643 345678899988876
Q ss_pred HHhc
Q psy2520 85 ALLK 88 (290)
Q Consensus 85 ~~~~ 88 (290)
.+..
T Consensus 97 lR~~ 100 (186)
T cd01130 97 LRMR 100 (186)
T ss_pred hccC
Confidence 6543
No 459
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.93 E-value=5.3e-09 Score=98.19 Aligned_cols=124 Identities=25% Similarity=0.352 Sum_probs=76.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCc
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD 90 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~ 90 (290)
.++.++.|.||+||||||+++.+.+.+.+. ..|.|...+.++........+.+.|..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~tiEdp~E~~~~~~~~~i~q~e--------------------- 176 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITIEDPIEYVHRNKRSLINQRE--------------------- 176 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEEcCChhhhccCccceEEccc---------------------
Confidence 467899999999999999999999866532 246666544332211000111111100
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2520 91 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~ 170 (290)
.|. ...+ ---+++++|-++|+++++||+. |+.+....++
T Consensus 177 ------------------vg~----------------~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~ 215 (343)
T TIGR01420 177 ------------------VGL----------------DTLS----FANALRAALREDPDVILIGEMR---DLETVELALT 215 (343)
T ss_pred ------------------cCC----------------CCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH
Confidence 000 0001 1224667888999999999997 8877754443
Q ss_pred HHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 171 MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 171 ~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
. ...|.+++.+.|-.+ .....+|++-|-
T Consensus 216 ---a--a~tGh~v~~T~Ha~~--~~~~~~Rl~~~~ 243 (343)
T TIGR01420 216 ---A--AETGHLVFGTLHTNS--AAQTIERIIDVF 243 (343)
T ss_pred ---H--HHcCCcEEEEEcCCC--HHHHHHHHHHhc
Confidence 2 345889999999853 456778876653
No 460
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.90 E-value=1.3e-09 Score=96.12 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=30.8
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHH--cCCCCCCCCccEEEECCE
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALS--QRLPDDCIIDGDIRVNGK 52 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~--G~~~~~~~~~G~I~i~G~ 52 (290)
.+=+++|++++|.||+|||||||...++ ++ .+. ++-+++..+
T Consensus 14 ~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g---~~~~~is~e 57 (229)
T TIGR03881 14 EGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDG---DPVIYVTTE 57 (229)
T ss_pred cCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcC---CeEEEEEcc
Confidence 3457899999999999999999987654 43 332 345666654
No 461
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.90 E-value=2.7e-10 Score=111.62 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=94.9
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHH--HcCCCCCCCCccEEEECCEecCccc---cccEEEEccCCCCCCCCCHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAAL--SQRLPDDCIIDGDIRVNGKPVEGKF---RSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l--~G~~~~~~~~~G~I~i~G~~~~~~~---~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
+=+.+|..+.|.||+|||||||..-+ .|..... +.-+++..+.-...+ .+.+|+-+++..--..+.+.+
T Consensus 16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~--- 89 (484)
T TIGR02655 16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILD--- 89 (484)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEe---
Confidence 44778999999999999999998755 4554432 355666554432221 233555444211000000000
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHH--HHHHhCCCeEEEeCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA--TELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia--~aL~~~p~llllDEPtsgL 160 (290)
.. ... ....+++.+++.+..++. ...+|+|++|||.|+ .+|...|+..
T Consensus 90 ------~~---~~~----~~~~~~~~~~l~~~l~~i--------~~~ls~g~~qRVvIDSl~aL~~~~~~~--------- 139 (484)
T TIGR02655 90 ------AS---PDP----EGQDVVGGFDLSALIERI--------NYAIRKYKAKRVSIDSVTAVFQQYDAV--------- 139 (484)
T ss_pred ------cC---chh----ccccccccCCHHHHHHHH--------HHHHHHhCCcEEEEeehhHhhhhcCch---------
Confidence 00 000 000122233333344443 234999999999999 5666665443
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHH-------H-HhhcCeEEEEe
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE-------L-IDMFDKIILLA 205 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~-------~-~~~~d~v~~l~ 205 (290)
+..+..++++++.+ ++.|.|+|+++|++... + ..+||.|+.|+
T Consensus 140 -~~~r~~l~~Li~~L-~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -SVVRREIFRLVARL-KQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -HHHHHHHHHHHHHH-HHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 56778899999998 55699999999986310 1 45789999886
No 462
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.88 E-value=1.8e-09 Score=103.58 Aligned_cols=83 Identities=23% Similarity=0.194 Sum_probs=65.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----------cccccEEEEccCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----------KFRSACGFMYQHDLFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----------~~~~~ig~v~Q~~~~~~ 73 (290)
+++ +.+.+|++++|+|+||||||||+++|+|+.+++...-|.|-.+|+++.. ..+..+++++|+...+.
T Consensus 147 D~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~ 225 (434)
T PRK07196 147 NGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLM 225 (434)
T ss_pred cce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhh
Confidence 356 9999999999999999999999999999988752122555555555432 12457999999999999
Q ss_pred CCCHHHHHHHHHHh
Q psy2520 74 SLTVYEHLYFMALL 87 (290)
Q Consensus 74 ~lTv~e~l~~~~~~ 87 (290)
.+++.+++.+.+..
T Consensus 226 rl~a~e~a~~iAEy 239 (434)
T PRK07196 226 RIKATELCHAIATY 239 (434)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999877654
No 463
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=3.4e-09 Score=100.23 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=54.8
Q ss_pred CCCChHHHHHHHHHHHHHh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 128 VVLSGGERKRLSFATELLT---------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~---------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
..+|.||+|++.||.+|+. +|+|||||||+++||+..+..+++.|... |.++++++|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChh
Confidence 3599999999999999999 99999999999999999999999999753 679999999863
No 464
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.87 E-value=7.1e-09 Score=108.79 Aligned_cols=77 Identities=32% Similarity=0.352 Sum_probs=68.0
Q ss_pred CCCCChHHHHHHHHHHHHH------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 127 KVVLSGGERKRLSFATELL------TD--PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~------~~--p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
+..|||||+-.++||.+|+ .+ -++|+|||||..||+.....++++|..+. ..+.+|+||||+. ++...+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~-~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELL-SDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHH-hcCCeEEEEeChH--HHHHhC
Confidence 6779999999999888875 35 69999999999999999999999999994 4589999999984 678899
Q ss_pred CeEEEEeC
Q psy2520 199 DKIILLAD 206 (290)
Q Consensus 199 d~v~~l~~ 206 (290)
|.++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99988864
No 465
>PRK14079 recF recombination protein F; Provisional
Probab=98.83 E-value=8.1e-09 Score=97.15 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=63.0
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 128 VVLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
.-+|+||++++++|..|+ .+|+++|||||+++||+..+..+++.|... . .++|-+|+. ...+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~-~---q~~it~t~~-----~~~~ 332 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL-P---QAIVAGTEA-----PPGA 332 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC-C---cEEEEcCCC-----CCCC
Confidence 358999999999999999 899999999999999999999999888654 1 244444432 4689
Q ss_pred CeEEEEeCCeEEEEc
Q psy2520 199 DKIILLADSRTAFIG 213 (290)
Q Consensus 199 d~v~~l~~G~i~~~g 213 (290)
|+++.+.+|++.-..
T Consensus 333 ~~~~~~~~~~~~~~~ 347 (349)
T PRK14079 333 ALTLRIEAGVFTPEA 347 (349)
T ss_pred ceEEEEeccEecCCC
Confidence 999999999875443
No 466
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.81 E-value=4.2e-09 Score=90.90 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=64.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcC-chhh
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL-DRRV 93 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~-~~~~ 93 (290)
+++|.||||||||||.++|++++. .|.+.+-+.+ + ++..++..+.......... +...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~~~v~~~D---------------~-~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPKVVIISQD---------------S-YYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCCeEEEEec---------------c-cccccccccHHHhccCCCCCCCcc
Confidence 579999999999999999999872 2444333222 1 1111222221111100000 0001
Q ss_pred hHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 94 KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 94 ~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
. .+...+.+..+...+..+.+ ..+.|.|++++..+ .+..|+++|+|.|+.+.++
T Consensus 60 ~----~~~~~~~l~~l~~~~~~~~p--------~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 D----FDLLISHLQDLKNGKSVEIP--------VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred c----HHHHHHHHHHHHCCCCEecc--------ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1 12233455555554444444 34488888876555 5788999999999999987
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.78 E-value=2.1e-07 Score=96.98 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=53.2
Q ss_pred HHHHHHhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh--hcCeEEEEeCCeEE
Q psy2520 140 FATELLTDPALLLCDEPTTGL-DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID--MFDKIILLADSRTA 210 (290)
Q Consensus 140 ia~aL~~~p~llllDEPtsgL-D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~--~~d~v~~l~~G~i~ 210 (290)
|++++..+|+++++|||+.+| |+..+..+.+.++.++ +.|.+++++||++. ++.. .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~R-K~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLR-KANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 567788999999999999999 7999999999999994 55889999999985 5544 33443333344443
No 468
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.77 E-value=1.3e-08 Score=105.75 Aligned_cols=67 Identities=24% Similarity=0.163 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHHHh--CCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCe
Q psy2520 130 LSGGERKRLSFATELLT--DPALLLCDEP---TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 200 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~--~p~llllDEP---tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~ 200 (290)
+|.=+.....++.+|-. ++.++|+||| |+.+|..+ ..+.++..+.+..+.+++++||.. ++..++++
T Consensus 667 ~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 667 RSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 66666666666666654 8999999999 88899544 455666666443368999999983 67777765
No 469
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.73 E-value=1.4e-07 Score=91.14 Aligned_cols=163 Identities=21% Similarity=0.219 Sum_probs=99.0
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------------cccccEEEEccCCCCCCCC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------------~~~~~ig~v~Q~~~~~~~l 75 (290)
+.+.+|+.++|+|+||+|||||+++|++...++ .|.+...|+.-.. .+++.+-++.+.+.
T Consensus 158 ~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~----- 229 (440)
T TIGR01026 158 LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ----- 229 (440)
T ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC-----
Confidence 889999999999999999999999999998874 5666665554321 12233444443221
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC--ccCcccCCcCCCCCCCCChHHHHHHHHHHHH--HhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN--SQHTRIGSSSITQKVVLSGGERKRLSFATEL--LTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL--~~~p~ll 151 (290)
++.+-..- +.. .-.+.+.+...|-.- ..|. |+ | .|+|+ +. +
T Consensus 230 ~p~~r~~~-~~~-----------a~t~AE~frd~G~~Vll~~Ds------------lT-----r--~A~A~REis----l 274 (440)
T TIGR01026 230 SPLLRLKG-AYV-----------ATAIAEYFRDQGKDVLLLMDS------------VT-----R--FAMAQREIG----L 274 (440)
T ss_pred CHHHHHHH-HHH-----------HHHHHHHHHHCCCCEEEEEeC------------hH-----H--HHHHHHHHH----H
Confidence 11111110 000 000112222223210 0111 22 1 11111 10 2
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHhcCCc-------EEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 152 LCDEP--TTGLDSFSASKLIRMMRELTSQRKK-------TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 152 llDEP--tsgLD~~~~~~i~~~l~~l~~~~g~-------tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
.+.|| +.|+||.....+.+++.+.. ..+. ||++.+||+. ..++|++..+.+|+++.+....+
T Consensus 275 ~~ge~P~~~Gypp~~~~~l~~l~ERag-~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 275 AAGEPPATKGYTPSVFSTLPRLLERAG-ASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred hcCCCCcccccChhHHHHHHHHHHHhc-cCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 23565 45999999999999999984 4466 8888899863 45899999999999999886654
No 470
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.72 E-value=7.9e-09 Score=88.05 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=46.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc--cc-ccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK--FR-SACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~--~~-~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
+|++++|+|+||||||||+++|++++.+ +.++|.++... .+ ...|+.+|+...++..++..++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998765 46788776431 22 235666666544455555555554
No 471
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.70 E-value=2.9e-08 Score=107.71 Aligned_cols=60 Identities=30% Similarity=0.396 Sum_probs=52.8
Q ss_pred CCCCChHHHHHHH----HHHH--------HHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 127 KVVLSGGERKRLS----FATE--------LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 127 ~~~LSgGqrqRv~----ia~a--------L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
...|||||||+++ +|++ +..+|+++||||||+|||+.++..+++++..+ |.++|++||..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 4679999999996 5655 45899999999999999999999999999888 57899999863
No 472
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.64 E-value=5.4e-07 Score=93.50 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=41.8
Q ss_pred HHhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 144 LLTDPALLLCDEPTTGLD-SFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 144 L~~~p~llllDEPtsgLD-~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
+..+|.++++|||...|| +..+..+.+.++.+ ++.|..++++||++.
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~-RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVL-RKLNTFVIFATQSVE 686 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence 456899999999999999 89999999999999 456889999999974
No 473
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.64 E-value=1.2e-07 Score=102.02 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=36.0
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK 52 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~ 52 (290)
++..+.+++++|+|++|+|||||++++++.+... ..|.+++++.
T Consensus 201 ~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~ 244 (1153)
T PLN03210 201 HLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRA 244 (1153)
T ss_pred ccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeecc
Confidence 4556789999999999999999999997766542 4799998753
No 474
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.57 E-value=1.8e-07 Score=90.97 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=45.2
Q ss_pred hCCCeEEEeCCCCCC---------CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH-------HHHhhcCeEEEEeCCe
Q psy2520 146 TDPALLLCDEPTTGL---------DSFSASKLIRMMRELTSQRKKTVLCTIHQPSS-------ELIDMFDKIILLADSR 208 (290)
Q Consensus 146 ~~p~llllDEPtsgL---------D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~-------~~~~~~d~v~~l~~G~ 208 (290)
.+|+++++|.-++=. +....++++..|.+++++.|.|+++++|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999775421 12335566677888877889999999996431 1566899999998654
No 475
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.53 E-value=1e-07 Score=81.62 Aligned_cols=38 Identities=42% Similarity=0.629 Sum_probs=31.6
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG 56 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~ 56 (290)
|++++|+||||||||||+++|++...+ .+.+++..+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~------~~~~~~~~~~~ 39 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT------QLLVAHRYITR 39 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC------eEEEcCEECCC
Confidence 789999999999999999999998654 46777766543
No 476
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.51 E-value=1.3e-07 Score=83.78 Aligned_cols=73 Identities=26% Similarity=0.312 Sum_probs=49.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccE----EEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD----IRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~----I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
.+..+++|.||||||||||.++|++++++. .|. |.+++...........|++++.. .+..+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~---~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD---GELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc---cCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 346799999999999999999999999884 577 55554333222334467766532 3355667666655443
Q ss_pred h
Q psy2520 87 L 87 (290)
Q Consensus 87 ~ 87 (290)
+
T Consensus 107 l 107 (229)
T PRK09270 107 L 107 (229)
T ss_pred H
Confidence 3
No 477
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.49 E-value=3e-06 Score=76.49 Aligned_cols=55 Identities=7% Similarity=0.094 Sum_probs=39.4
Q ss_pred HHHHHHHHHHH--hCCCeEEEeCCCCCCCH-------H-HHHHHHHHHHHHHhcCCcEEEEEeCC
Q psy2520 135 RKRLSFATELL--TDPALLLCDEPTTGLDS-------F-SASKLIRMMRELTSQRKKTVLCTIHQ 189 (290)
Q Consensus 135 rqRv~ia~aL~--~~p~llllDEPtsgLD~-------~-~~~~i~~~l~~l~~~~g~tii~~tH~ 189 (290)
...+..++.++ .+|+++++|..+.-.+. . ....++..|+.++++.+.||++++|-
T Consensus 126 ~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 126 DSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred HHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 34555566555 47999999998664332 1 24567778888877789999999984
No 478
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.48 E-value=2.4e-07 Score=89.22 Aligned_cols=60 Identities=30% Similarity=0.369 Sum_probs=48.7
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECC---EecCc--------cccccEEEEccCCC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG---KPVEG--------KFRSACGFMYQHDL 70 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G---~~~~~--------~~~~~ig~v~Q~~~ 70 (290)
..+.+||.++|+|||||||||||++|+++.+|+ .|.|.+.| +++.. ..++.|+|++|.+.
T Consensus 160 ~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 160 TPLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred ceecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 479999999999999999999999999998884 68888854 55432 12467999999653
No 479
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.48 E-value=2.2e-07 Score=65.39 Aligned_cols=34 Identities=38% Similarity=0.410 Sum_probs=28.3
Q ss_pred eEEEEeC-CeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 6 LTGAALS-GTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 6 is~~~~~-Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.++.+.+ |.++.|.|||||||||||.+|.=++-+
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5677776 569999999999999999998866554
No 480
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.46 E-value=3.4e-07 Score=88.22 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=64.8
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECC---EecCc----cc---cccEEEE-----ccCC--
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG---KPVEG----KF---RSACGFM-----YQHD-- 69 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G---~~~~~----~~---~~~ig~v-----~Q~~-- 69 (290)
.+.+.+|+.++|+|+||||||||+++|+|..++. ..|.|.+.| +++.. .+ ....+++ +|++
T Consensus 158 ~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~ 235 (442)
T PRK06315 158 MLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQL 235 (442)
T ss_pred cccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHH
Confidence 4899999999999999999999999999987542 246777644 54432 11 1234555 8865
Q ss_pred CCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC
Q psy2520 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM 112 (290)
Q Consensus 70 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 112 (290)
.+.+.+ +...++-..+.+............++.++++.++|.
T Consensus 236 rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 236 RLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred HhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 233333 444443333322221112234556778899999984
No 481
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.46 E-value=6.8e-07 Score=84.77 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=43.9
Q ss_pred hCCCeEEEeCCCC----CCC-----HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH-------HHHhhcCeEEEEeCC
Q psy2520 146 TDPALLLCDEPTT----GLD-----SFSASKLIRMMRELTSQRKKTVLCTIHQPSS-------ELIDMFDKIILLADS 207 (290)
Q Consensus 146 ~~p~llllDEPts----gLD-----~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~-------~~~~~~d~v~~l~~G 207 (290)
.+|+++++|+-.+ .+| ....++++..|.+++++.|.|++++.|-..+ .+..++|.++.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 4899999999633 333 2334556677777777789999999885321 257789999998754
No 482
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.46 E-value=4.2e-07 Score=68.91 Aligned_cols=48 Identities=31% Similarity=0.461 Sum_probs=37.2
Q ss_pred CCCCChHHH-HHHHHHHHHH------h------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q psy2520 127 KVVLSGGER-KRLSFATELL------T------DPALLLCDEPTTGLDSFSASKLIRMMRE 174 (290)
Q Consensus 127 ~~~LSgGqr-qRv~ia~aL~------~------~p~llllDEPtsgLD~~~~~~i~~~l~~ 174 (290)
.+.+||||| ..+++|.+++ . .|++++|||||++||+..+..++++|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 345999999 5555544442 2 3799999999999999999999999874
No 483
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.44 E-value=2.9e-07 Score=78.95 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH-HHHhhcCeEEEEeCC
Q psy2520 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS-ELIDMFDKIILLADS 207 (290)
Q Consensus 132 gGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~-~~~~~~d~v~~l~~G 207 (290)
.|+-+|..||.++..+|+.+..+| +.+||.....+.+.+.+. .+.|.+||+.+|.+.. .+..+||.+++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~-~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQF-QSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHh-hcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 478899999999999999988887 789999999999999887 4446799999998631 256789999888764
No 484
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.44 E-value=8.3e-08 Score=83.59 Aligned_cols=29 Identities=31% Similarity=0.554 Sum_probs=26.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999998764
No 485
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.44 E-value=6.5e-07 Score=90.19 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=70.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCC-----CCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPDDC-----IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 87 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~-----~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~ 87 (290)
.+.++|+||||+|||||++++.+..++.. ...+-|.++|..+.... ....+-.|+.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~-----------------~~i~~~llg~-- 235 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDP-----------------REVTNPLLGS-- 235 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCH-----------------HHHhHHhcCC--
Confidence 45799999999999999999998875420 01233555554321000 0001111110
Q ss_pred cCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHH
Q psy2520 88 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 167 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~ 167 (290)
. . ......+.+.++.+|+.+..... +..+||| +|+||| +..||+..+..
T Consensus 236 -~----~-~~~~~~a~~~l~~~gl~~~~~g~--------v~~asgG----------------vL~LDE-i~~Ld~~~Q~~ 284 (615)
T TIGR02903 236 -V----H-DPIYQGARRDLAETGVPEPKTGL--------VTDAHGG----------------VLFIDE-IGELDPLLQNK 284 (615)
T ss_pred -c----c-HHHHHHHHHHHHHcCCCchhcCc--------hhhcCCC----------------eEEEec-cccCCHHHHHH
Confidence 0 0 00011234457778887776666 4458998 999999 79999999999
Q ss_pred HHHHHHH
Q psy2520 168 LIRMMRE 174 (290)
Q Consensus 168 i~~~l~~ 174 (290)
+++.|.+
T Consensus 285 Ll~~Le~ 291 (615)
T TIGR02903 285 LLKVLED 291 (615)
T ss_pred HHHHHhh
Confidence 9999975
No 486
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.41 E-value=2.3e-07 Score=84.97 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=50.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEec---CccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 87 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~---~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~ 87 (290)
-.++||.||||||||||+++|.+++. | .+|.|.+-+.+- ....++..+++ |+..+.+.+++.+.+.+...+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~---~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWP---EHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcC---CCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHH
Confidence 36999999999999999999999886 4 257776644442 22233345554 666667778888877775544
Q ss_pred c
Q psy2520 88 K 88 (290)
Q Consensus 88 ~ 88 (290)
+
T Consensus 138 k 138 (290)
T TIGR00554 138 K 138 (290)
T ss_pred H
Confidence 3
No 487
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.41 E-value=8.9e-06 Score=77.61 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=64.3
Q ss_pred CCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC-----HHHH----------HHHHHHHHHHHhcCCcEEEEEeCCCcH
Q psy2520 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLD-----SFSA----------SKLIRMMRELTSQRKKTVLCTIHQPSS 192 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD-----~~~~----------~~i~~~l~~l~~~~g~tii~~tH~~~~ 192 (290)
.+=||-.-|=.+|..||-...++||+||=|++-- ...+ .-+.+.++.+..+.|.+.|+|+--. .
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggs-g 399 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGS-G 399 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccc-h
Confidence 3479999999999999999999999999999643 2223 2346667777666798888887664 5
Q ss_pred HHHhhcCeEEEEeCCeE
Q psy2520 193 ELIDMFDKIILLADSRT 209 (290)
Q Consensus 193 ~~~~~~d~v~~l~~G~i 209 (290)
..+..+|+|++|++=+.
T Consensus 400 dy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 400 DYFDVADRVIMMDEYRP 416 (448)
T ss_pred hhHhhCCEEEEecCccc
Confidence 78899999999998653
No 488
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.39 E-value=2.1e-07 Score=80.55 Aligned_cols=56 Identities=29% Similarity=0.340 Sum_probs=42.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 68 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~ 68 (290)
.+|.+++|+|+||||||||.+.|++.+.+. -.|.+.++|.++...+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~--~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHEL--GVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhC--CCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 578999999999999999999999987653 14789999987654333345665554
No 489
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.39 E-value=2.6e-07 Score=85.84 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=53.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----------cccccEEEEccCCCCCCCCCHHHH
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----------KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----------~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.+|++++++|||||||||++..|++.+.+. .++|.+.+.+... ..+..+.+++|.....|..+++++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 578999999999999999999999998763 5799988877632 124568888886554554556666
Q ss_pred HHHH
Q psy2520 81 LYFM 84 (290)
Q Consensus 81 l~~~ 84 (290)
+...
T Consensus 189 l~~~ 192 (318)
T PRK10416 189 IQAA 192 (318)
T ss_pred HHHH
Confidence 5543
No 490
>PRK01889 GTPase RsgA; Reviewed
Probab=98.38 E-value=5.1e-07 Score=85.22 Aligned_cols=71 Identities=24% Similarity=0.255 Sum_probs=54.2
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.+.+|++++|+|+||+|||||++.|+|...+. .|+|.+++..-.. ..++.+++++|+..+++. ....++.+
T Consensus 191 ~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~l 262 (356)
T PRK01889 191 WLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQL 262 (356)
T ss_pred HhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhcc
Confidence 45689999999999999999999999998874 7999998754322 235679999998776653 34444443
No 491
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.37 E-value=4.6e-07 Score=74.22 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=32.9
Q ss_pred CCCChHHHHHHHHHHHHH-----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2520 128 VVLSGGERKRLSFATELL-----TDPALLLCDEPTTGLDSFSASKLIRMMREL 175 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~-----~~p~llllDEPtsgLD~~~~~~i~~~l~~l 175 (290)
..+|++++++........ ..|+++ |++++|.....++++.|.++
T Consensus 121 D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 121 DKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 347889888876665532 345554 99999999999999988764
No 492
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.36 E-value=1e-06 Score=74.57 Aligned_cols=27 Identities=48% Similarity=0.740 Sum_probs=24.6
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
|++++|+||||||||||++.|++.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 678999999999999999999998754
No 493
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.36 E-value=2.4e-05 Score=69.77 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=35.1
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
.+..++|+||+..|=++.....+.. +++.+.+..+..+|++||.. ++.++.
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~--~l~~~~ 172 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH--ELAELL 172 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G--GGGGHH
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc--hhHHHh
Confidence 3567899999999999998877654 44555332478899999986 344443
No 494
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.34 E-value=2.1e-05 Score=81.87 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=47.9
Q ss_pred HhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHH--------HHhhcCeEEEEeCC
Q psy2520 145 LTDPALLLCDEPTTGLD-SFSASKLIRMMRELTSQRKKTVLCTIHQPSSE--------LIDMFDKIILLADS 207 (290)
Q Consensus 145 ~~~p~llllDEPtsgLD-~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~--------~~~~~d~v~~l~~G 207 (290)
-.+|+++++|||+.+|| +..+..+.+.++.++ +.|.+++++||++.+. +.+.|+..++|.+.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~ 703 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLR-KKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE 703 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence 35899999999999999 788999999999984 5688999999997421 33345555555554
No 495
>PRK08149 ATP synthase SpaL; Validated
Probab=98.34 E-value=5.8e-07 Score=86.31 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=51.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQH 68 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~ 68 (290)
++ +.+.+||.++|+|+||+|||||+++|++...++...-|.|-.+|+++.. ...+++++|+..
T Consensus 144 ~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 144 GL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred ee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 45 8999999999999999999999999999988753234899999998753 123678888874
No 496
>PTZ00035 Rad51 protein; Provisional
Probab=98.32 E-value=7.3e-07 Score=83.55 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=33.3
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCC-CC--CCCccEE-EECCEe
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLP-DD--CIIDGDI-RVNGKP 53 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~-~~--~~~~G~I-~i~G~~ 53 (290)
+=+.+|+++.|.||||||||||+..++.... |. ....|.+ +|+++.
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 4478999999999999999999998875433 21 0024665 777654
No 497
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.32 E-value=5.4e-07 Score=86.80 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=53.0
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-------ccccEEEEccCCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-------FRSACGFMYQHDL 70 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-------~~~~ig~v~Q~~~ 70 (290)
|.-+.+.+|++++|+|+||+|||||+++|+|+.+++....|.|.+.|+++... -....++|+|+..
T Consensus 167 D~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 167 NALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred eecccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 44589999999999999999999999999999888533358999999988541 1245788888643
No 498
>PRK13764 ATPase; Provisional
Probab=98.31 E-value=1.8e-06 Score=86.23 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=46.8
Q ss_pred HHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC---------------CCcHHHHhhcCeEEEEeCCe
Q psy2520 144 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH---------------QPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 144 L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH---------------~~~~~~~~~~d~v~~l~~G~ 208 (290)
|..+|+++++||.-..-| ++++..++ ..|..++.+.| ++ ..+...+|+++++.+|+
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~-~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~ 391 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMR-LAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGE 391 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHH-HcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCE
Confidence 678999999999985322 44444442 23677888999 75 36778999999999999
Q ss_pred E--EEEcCH
Q psy2520 209 T--AFIGSK 215 (290)
Q Consensus 209 i--~~~g~~ 215 (290)
+ ++.++.
T Consensus 392 I~~v~~~~~ 400 (602)
T PRK13764 392 VSKVYDLEF 400 (602)
T ss_pred EEEEEeeee
Confidence 9 666653
No 499
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.29 E-value=1.1e-06 Score=83.05 Aligned_cols=59 Identities=31% Similarity=0.370 Sum_probs=39.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHD 69 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~ 69 (290)
.+|.+++|+||+||||||+|++|++.+.+.....+.|.....++.- ..+...+++.|..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~ 193 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSE 193 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeee
Confidence 4788999999999999999999999874321012356555544432 1233457788864
No 500
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.27 E-value=6.9e-07 Score=77.27 Aligned_cols=28 Identities=54% Similarity=0.760 Sum_probs=26.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999864
Done!