Query psy2520
Match_columns 290
No_of_seqs 269 out of 2993
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 18:18:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1E-54 3.4E-59 406.6 25.7 201 4-219 45-252 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 4.2E-54 1.5E-58 404.6 26.1 202 4-220 20-223 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 2.1E-54 7.3E-59 404.0 23.4 202 4-220 21-228 (359)
4 3tif_A Uncharacterized ABC tra 100.0 2.9E-54 9.8E-59 382.6 22.4 202 4-218 22-232 (235)
5 3gfo_A Cobalt import ATP-bindi 100.0 1E-53 3.5E-58 387.2 23.3 202 4-220 25-233 (275)
6 1z47_A CYSA, putative ABC-tran 100.0 3.1E-53 1.1E-57 396.0 26.0 201 4-219 32-234 (355)
7 1b0u_A Histidine permease; ABC 100.0 4.5E-53 1.5E-57 380.6 25.1 200 4-219 23-241 (262)
8 2olj_A Amino acid ABC transpor 100.0 7.1E-53 2.4E-57 379.4 25.9 200 4-219 41-247 (263)
9 2it1_A 362AA long hypothetical 100.0 6.3E-53 2.2E-57 395.1 25.7 202 4-220 20-223 (362)
10 2yyz_A Sugar ABC transporter, 100.0 4.7E-53 1.6E-57 395.5 24.0 202 4-220 20-223 (359)
11 1g29_1 MALK, maltose transport 100.0 1.5E-52 5.1E-57 394.1 26.5 202 4-220 20-229 (372)
12 4g1u_C Hemin import ATP-bindin 100.0 6.9E-53 2.4E-57 380.2 22.9 199 4-219 28-236 (266)
13 1oxx_K GLCV, glucose, ABC tran 100.0 5.3E-53 1.8E-57 394.8 22.8 201 4-219 22-229 (353)
14 3d31_A Sulfate/molybdate ABC t 100.0 9.7E-53 3.3E-57 392.1 23.6 198 4-219 17-216 (348)
15 1vpl_A ABC transporter, ATP-bi 100.0 2.2E-52 7.5E-57 374.9 24.2 201 4-220 32-235 (256)
16 2pcj_A ABC transporter, lipopr 100.0 2.4E-52 8.3E-57 367.6 24.0 194 4-214 21-222 (224)
17 1v43_A Sugar-binding transport 100.0 1E-52 3.5E-57 394.9 22.7 202 4-220 28-231 (372)
18 2onk_A Molybdate/tungstate ABC 100.0 1.7E-52 5.7E-57 372.4 21.9 198 4-219 16-215 (240)
19 1ji0_A ABC transporter; ATP bi 100.0 2.8E-52 9.6E-57 370.8 21.5 199 4-219 23-227 (240)
20 1g6h_A High-affinity branched- 100.0 2E-52 6.9E-57 375.3 20.1 201 4-217 24-239 (257)
21 2yz2_A Putative ABC transporte 100.0 3.4E-51 1.2E-55 369.1 20.6 200 4-220 24-227 (266)
22 2ixe_A Antigen peptide transpo 100.0 5E-51 1.7E-55 369.0 20.7 202 4-219 36-244 (271)
23 2qi9_C Vitamin B12 import ATP- 100.0 1.5E-50 5E-55 361.7 22.0 194 4-219 17-221 (249)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 9.5E-51 3.3E-55 363.0 20.4 199 4-216 20-229 (250)
25 2ihy_A ABC transporter, ATP-bi 100.0 1.3E-50 4.4E-55 367.7 17.9 203 4-219 38-251 (279)
26 3nh6_A ATP-binding cassette SU 100.0 4.8E-50 1.6E-54 368.0 21.1 196 4-220 71-277 (306)
27 2nq2_C Hypothetical ABC transp 100.0 1.7E-49 5.9E-54 355.6 23.6 194 4-219 22-216 (253)
28 2zu0_C Probable ATP-dependent 100.0 2E-49 6.7E-54 357.8 23.2 209 4-226 37-259 (267)
29 2ff7_A Alpha-hemolysin translo 100.0 7.6E-50 2.6E-54 356.6 20.1 195 4-219 26-231 (247)
30 1mv5_A LMRA, multidrug resista 100.0 2.9E-49 1E-53 351.9 17.6 200 4-219 19-225 (243)
31 1sgw_A Putative ABC transporte 100.0 5.7E-49 2E-53 343.9 14.1 185 4-209 26-210 (214)
32 2ghi_A Transport protein; mult 100.0 5.2E-48 1.8E-52 347.3 20.6 194 4-219 37-241 (260)
33 2pjz_A Hypothetical protein ST 100.0 5E-48 1.7E-52 347.8 20.5 189 4-219 22-214 (263)
34 3gd7_A Fusion complex of cysti 100.0 5.9E-48 2E-52 364.6 13.6 198 4-220 38-242 (390)
35 2pze_A Cystic fibrosis transme 100.0 1.3E-46 4.6E-51 332.0 19.3 185 4-219 25-217 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.4E-46 4.8E-51 333.6 17.4 187 4-219 22-216 (237)
37 3qf4_A ABC transporter, ATP-bi 100.0 5.5E-46 1.9E-50 368.7 17.6 203 4-220 360-566 (587)
38 3b5x_A Lipid A export ATP-bind 100.0 2.9E-45 1E-49 363.2 22.0 196 4-219 360-566 (582)
39 4a82_A Cystic fibrosis transme 100.0 1.1E-45 3.7E-50 366.0 18.2 196 4-220 358-564 (578)
40 3b60_A Lipid A export ATP-bind 100.0 2.2E-45 7.6E-50 364.0 20.4 197 4-220 360-567 (582)
41 2yl4_A ATP-binding cassette SU 100.0 2.8E-45 9.7E-50 364.1 20.0 198 4-219 361-569 (595)
42 3qf4_B Uncharacterized ABC tra 100.0 2.6E-45 9E-50 364.6 16.7 196 4-220 372-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.4E-44 4.7E-49 329.7 17.5 184 4-219 55-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 5.7E-43 2E-47 373.6 16.9 198 4-220 1096-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 3E-42 1E-46 368.1 19.2 195 4-219 435-640 (1321)
46 3bk7_A ABC transporter ATP-bin 100.0 1.2E-41 4.1E-46 338.1 20.4 187 6-220 375-563 (607)
47 3g5u_A MCG1178, multidrug resi 100.0 7.9E-42 2.7E-46 364.0 20.4 203 4-220 407-613 (1284)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-41 3.9E-46 334.4 17.2 187 6-220 305-493 (538)
49 3g5u_A MCG1178, multidrug resi 100.0 1.6E-41 5.6E-46 361.6 19.1 198 4-220 1050-1258(1284)
50 3ozx_A RNAse L inhibitor; ATP 100.0 4.2E-41 1.4E-45 330.1 18.5 186 7-218 288-475 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 2.5E-40 8.6E-45 328.4 19.1 189 4-220 364-559 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 8.3E-40 2.8E-44 328.9 17.8 205 4-219 35-297 (670)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 5.5E-39 1.9E-43 315.3 11.6 178 4-207 39-234 (538)
54 3bk7_A ABC transporter ATP-bin 100.0 6.4E-39 2.2E-43 318.5 11.0 178 4-207 109-304 (607)
55 3ux8_A Excinuclease ABC, A sub 100.0 3.1E-37 1E-41 310.2 19.0 192 4-219 339-639 (670)
56 2iw3_A Elongation factor 3A; a 100.0 4.9E-37 1.7E-41 316.1 20.3 181 4-220 452-635 (986)
57 3ozx_A RNAse L inhibitor; ATP 100.0 3.6E-37 1.2E-41 302.2 10.1 173 10-209 22-215 (538)
58 2iw3_A Elongation factor 3A; a 100.0 1.4E-36 5E-41 312.6 12.4 188 4-214 690-981 (986)
59 3j16_B RLI1P; ribosome recycli 100.0 5.2E-36 1.8E-40 297.4 12.6 180 9-211 99-301 (608)
60 3pih_A Uvrabc system protein A 100.0 2.2E-33 7.4E-38 288.4 23.1 196 4-219 601-901 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 3.6E-34 1.2E-38 293.2 15.8 196 4-219 641-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 7.5E-34 2.6E-38 289.7 15.4 109 100-219 708-826 (842)
63 2ygr_A Uvrabc system protein A 100.0 2.4E-33 8.2E-38 288.0 17.4 196 4-219 659-959 (993)
64 4aby_A DNA repair protein RECN 100.0 2.8E-32 9.6E-37 258.5 19.4 204 4-213 52-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.8E-36 9.6E-41 290.7 -8.6 185 5-219 130-337 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 4.8E-29 1.6E-33 233.9 18.0 82 127-211 277-364 (365)
67 1e69_A Chromosome segregation 100.0 6.1E-29 2.1E-33 229.2 13.9 87 127-217 217-310 (322)
68 3b85_A Phosphate starvation-in 100.0 1.3E-31 4.3E-36 233.0 -8.8 145 10-208 19-171 (208)
69 4gp7_A Metallophosphoesterase; 100.0 1.3E-29 4.5E-34 213.1 3.5 146 5-195 1-163 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 2.8E-30 9.6E-35 245.4 -8.8 172 5-208 41-255 (413)
71 1znw_A Guanylate kinase, GMP k 99.9 1.3E-31 4.6E-36 231.6 -16.8 175 8-205 15-202 (207)
72 3b9q_A Chloroplast SRP recepto 99.9 1.7E-28 5.7E-33 224.7 -0.7 174 4-210 91-285 (302)
73 1ye8_A Protein THEP1, hypothet 99.9 8.2E-28 2.8E-32 204.0 3.2 144 15-211 2-159 (178)
74 2og2_A Putative signal recogni 99.9 2.6E-27 9E-32 221.3 0.4 173 4-209 148-341 (359)
75 3sop_A Neuronal-specific septi 99.9 2.2E-27 7.5E-32 214.0 -5.8 146 15-190 4-150 (270)
76 1z6g_A Guanylate kinase; struc 99.9 3.8E-29 1.3E-33 218.4 -19.3 150 4-177 14-175 (218)
77 2o5v_A DNA replication and rep 99.9 1.5E-23 5.1E-28 196.0 15.0 81 129-218 265-354 (359)
78 3qkt_A DNA double-strand break 99.9 2.8E-23 9.6E-28 192.6 15.7 76 127-205 246-327 (339)
79 3pih_A Uvrabc system protein A 99.9 6.3E-24 2.1E-28 218.4 12.0 163 28-219 383-559 (916)
80 2v9p_A Replication protein E1; 99.9 6.2E-28 2.1E-32 220.8 -16.1 152 4-223 117-269 (305)
81 2dpy_A FLII, flagellum-specifi 99.9 3E-26 1E-30 219.5 -5.8 172 5-218 150-342 (438)
82 1cr0_A DNA primase/helicase; R 99.9 1.2E-24 4E-29 197.5 3.0 180 5-209 27-237 (296)
83 4ad8_A DNA repair protein RECN 99.9 6.8E-23 2.3E-27 200.1 15.2 77 127-207 394-473 (517)
84 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.1E-24 3.7E-29 201.7 0.9 128 5-209 163-292 (330)
85 1tf7_A KAIC; homohexamer, hexa 99.9 1.9E-23 6.4E-28 204.4 7.3 156 7-208 275-444 (525)
86 3aez_A Pantothenate kinase; tr 99.9 9.7E-25 3.3E-29 200.6 -5.4 123 10-162 87-209 (312)
87 2ehv_A Hypothetical protein PH 99.9 5.4E-24 1.9E-28 186.9 -0.5 162 8-205 25-206 (251)
88 2r6f_A Excinuclease ABC subuni 99.9 1.3E-21 4.4E-26 200.7 15.6 135 73-219 450-599 (972)
89 2jeo_A Uridine-cytidine kinase 99.9 1.6E-23 5.5E-28 185.4 0.8 173 4-222 16-189 (245)
90 4a74_A DNA repair and recombin 99.9 1.1E-23 3.9E-28 182.6 -0.4 155 8-208 20-201 (231)
91 2vf7_A UVRA2, excinuclease ABC 99.9 5.2E-22 1.8E-26 202.6 10.8 177 22-219 271-474 (842)
92 1tf7_A KAIC; homohexamer, hexa 99.9 1.9E-25 6.7E-30 218.5 -14.7 161 4-206 29-209 (525)
93 3thx_A DNA mismatch repair pro 99.9 6.4E-23 2.2E-27 211.6 2.9 147 4-217 653-810 (934)
94 2ygr_A Uvrabc system protein A 99.9 2.1E-21 7.2E-26 199.7 13.4 137 72-220 466-617 (993)
95 2o8b_B DNA mismatch repair pro 99.8 6.4E-23 2.2E-27 213.7 0.8 155 4-216 773-938 (1022)
96 1rj9_A FTSY, signal recognitio 99.8 5.8E-23 2E-27 188.1 -0.6 148 12-190 101-258 (304)
97 2obl_A ESCN; ATPase, hydrolase 99.8 4.1E-23 1.4E-27 192.3 -2.3 171 5-218 64-253 (347)
98 2eyu_A Twitching motility prot 99.8 3.1E-22 1.1E-26 179.4 2.4 129 5-206 19-147 (261)
99 3asz_A Uridine kinase; cytidin 99.8 1.6E-24 5.4E-29 186.7 -12.5 146 10-190 3-161 (211)
100 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.2E-20 4E-25 155.4 9.6 80 127-209 55-142 (148)
101 1w1w_A Structural maintenance 99.8 2.9E-20 9.8E-25 177.5 13.3 75 128-205 332-410 (430)
102 3thx_B DNA mismatch repair pro 99.8 1.6E-20 5.4E-25 193.4 9.2 141 4-201 664-805 (918)
103 3szr_A Interferon-induced GTP- 99.8 2.8E-22 9.5E-27 199.4 -5.7 165 16-220 48-237 (608)
104 1ewq_A DNA mismatch repair pro 99.8 4.6E-21 1.6E-25 194.4 2.2 127 5-198 571-704 (765)
105 1pzn_A RAD51, DNA repair and r 99.8 2E-21 6.7E-26 181.1 -0.6 161 7-213 125-308 (349)
106 1nlf_A Regulatory protein REPA 99.8 1.2E-19 4E-24 163.4 10.1 151 9-190 26-181 (279)
107 2w0m_A SSO2452; RECA, SSPF, un 99.8 2.1E-20 7.2E-25 161.7 4.5 159 9-207 19-192 (235)
108 1wb9_A DNA mismatch repair pro 99.8 1.6E-20 5.6E-25 191.3 2.2 153 4-214 599-752 (800)
109 2i3b_A HCR-ntpase, human cance 99.8 2.8E-22 9.7E-27 171.5 -9.9 155 13-212 1-168 (189)
110 2qnr_A Septin-2, protein NEDD5 99.8 1.2E-20 4E-25 172.4 -1.4 151 4-191 15-168 (301)
111 1s96_A Guanylate kinase, GMP k 99.8 3.1E-20 1.1E-24 162.3 -2.2 148 9-223 12-163 (219)
112 3jvv_A Twitching mobility prot 99.7 3.9E-19 1.3E-23 165.9 3.8 128 9-207 119-246 (356)
113 2bdt_A BH3686; alpha-beta prot 99.7 3E-21 1E-25 163.4 -12.2 170 13-216 2-180 (189)
114 1lw7_A Transcriptional regulat 99.7 2.6E-21 8.9E-26 180.9 -17.0 162 4-206 159-343 (365)
115 3kta_B Chromosome segregation 99.7 5.3E-17 1.8E-21 136.8 10.8 88 127-218 62-156 (173)
116 2cvh_A DNA repair and recombin 99.7 2.6E-17 8.9E-22 141.5 8.0 147 9-207 16-185 (220)
117 1zp6_A Hypothetical protein AT 99.7 7.5E-20 2.6E-24 154.6 -8.8 150 9-187 5-158 (191)
118 2bbw_A Adenylate kinase 4, AK4 99.7 3.8E-20 1.3E-24 163.5 -11.9 143 12-177 26-198 (246)
119 2ewv_A Twitching motility prot 99.7 1E-17 3.5E-22 157.2 2.6 125 10-205 133-257 (372)
120 1nij_A Hypothetical protein YJ 99.7 1.4E-20 4.8E-25 173.1 -17.6 160 14-199 5-197 (318)
121 1n0w_A DNA repair protein RAD5 99.7 4.4E-17 1.5E-21 142.1 5.4 153 8-207 19-209 (243)
122 2rcn_A Probable GTPase ENGC; Y 99.7 4.2E-17 1.4E-21 152.0 5.4 130 11-175 213-344 (358)
123 1pui_A ENGB, probable GTP-bind 99.7 7E-19 2.4E-23 150.3 -6.2 159 8-182 21-202 (210)
124 2yhs_A FTSY, cell division pro 99.7 2.7E-18 9.1E-23 165.6 -3.4 153 3-188 283-447 (503)
125 3e70_C DPA, signal recognition 99.6 1.3E-17 4.5E-22 154.0 0.5 163 11-210 127-307 (328)
126 2qag_C Septin-7; cell cycle, c 99.6 8.6E-18 3E-22 159.9 -1.7 146 4-190 28-177 (418)
127 2qag_B Septin-6, protein NEDD5 99.6 1.3E-17 4.4E-22 158.6 -1.4 175 4-189 31-218 (427)
128 2gza_A Type IV secretion syste 99.6 1.5E-16 5.2E-21 148.7 3.7 135 4-208 166-303 (361)
129 3ec2_A DNA replication protein 99.6 1.9E-16 6.5E-21 132.9 0.3 47 145-192 98-145 (180)
130 3lda_A DNA repair protein RAD5 99.6 8.7E-16 3E-20 145.3 4.6 63 146-208 272-364 (400)
131 1htw_A HI0065; nucleotide-bind 99.6 9.8E-17 3.4E-21 133.2 -1.8 73 4-83 24-97 (158)
132 2f1r_A Molybdopterin-guanine d 99.6 1.1E-17 3.8E-22 140.7 -7.8 138 14-179 3-163 (171)
133 1sxj_E Activator 1 40 kDa subu 99.5 5.2E-15 1.8E-19 136.4 6.9 146 16-203 39-187 (354)
134 3auy_A DNA double-strand break 99.5 8.8E-15 3E-19 137.0 8.5 75 127-205 278-359 (371)
135 2yv5_A YJEQ protein; hydrolase 99.5 2.2E-16 7.4E-21 144.2 -3.4 118 10-142 162-300 (302)
136 1udx_A The GTP-binding protein 99.5 1.5E-15 5.2E-20 144.3 1.6 170 3-201 147-319 (416)
137 2qm8_A GTPase/ATPase; G protei 99.5 1.8E-17 6.1E-22 153.6 -11.7 157 5-176 47-259 (337)
138 2kjq_A DNAA-related protein; s 99.5 4E-15 1.4E-19 122.1 2.9 43 146-190 82-125 (149)
139 1odf_A YGR205W, hypothetical 3 99.5 4.4E-16 1.5E-20 141.4 -3.9 128 11-164 29-169 (290)
140 1p9r_A General secretion pathw 99.5 7.4E-17 2.5E-21 153.5 -10.1 127 11-153 165-315 (418)
141 2oap_1 GSPE-2, type II secreti 99.5 5E-17 1.7E-21 158.3 -12.8 169 5-199 252-458 (511)
142 3c8u_A Fructokinase; YP_612366 99.4 2.6E-16 8.9E-21 135.5 -9.9 163 10-221 19-182 (208)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 1.3E-16 4.3E-21 150.6 -15.1 167 9-215 16-208 (392)
144 1u0l_A Probable GTPase ENGC; p 99.4 9.1E-15 3.1E-19 133.2 -2.4 100 9-118 165-288 (301)
145 2x8a_A Nuclear valosin-contain 99.4 1.3E-16 4.5E-21 143.6 -17.6 136 5-172 38-190 (274)
146 1sq5_A Pantothenate kinase; P- 99.3 7.8E-15 2.7E-19 134.0 -7.3 73 11-87 78-155 (308)
147 1t9h_A YLOQ, probable GTPase E 99.3 3.2E-14 1.1E-18 130.1 -3.9 118 8-137 168-303 (307)
148 2dr3_A UPF0273 protein PH0284; 99.3 3.1E-13 1.1E-17 117.7 1.6 69 138-206 117-196 (247)
149 1in4_A RUVB, holliday junction 99.3 4.4E-15 1.5E-19 137.0 -10.9 151 14-200 52-211 (334)
150 1lvg_A Guanylate kinase, GMP k 99.3 2.4E-16 8.1E-21 135.1 -18.3 57 140-206 116-173 (198)
151 1vma_A Cell division protein F 99.2 3.4E-12 1.2E-16 116.6 4.9 112 6-175 97-211 (306)
152 2px0_A Flagellar biosynthesis 99.2 1.7E-11 5.8E-16 111.4 8.7 159 11-229 103-269 (296)
153 2r6a_A DNAB helicase, replicat 99.2 4.9E-11 1.7E-15 114.3 12.0 173 8-209 198-401 (454)
154 1ls1_A Signal recognition part 99.2 5.4E-11 1.8E-15 108.0 10.5 128 4-187 91-219 (295)
155 3lnc_A Guanylate kinase, GMP k 99.2 2.8E-15 9.7E-20 130.8 -17.3 37 3-39 17-54 (231)
156 1oix_A RAS-related protein RAB 99.2 2.4E-12 8.2E-17 108.7 1.0 144 15-175 31-189 (191)
157 3tr0_A Guanylate kinase, GMP k 99.2 7.9E-13 2.7E-17 112.3 -2.4 68 7-81 1-72 (205)
158 1iy2_A ATP-dependent metallopr 99.1 1.2E-14 4.1E-19 130.4 -17.1 118 5-150 67-190 (278)
159 2ius_A DNA translocase FTSK; n 99.1 2.5E-12 8.6E-17 124.9 -2.0 175 5-203 159-361 (512)
160 1ixz_A ATP-dependent metallopr 99.1 1.5E-14 5.1E-19 127.7 -16.9 123 5-157 43-171 (254)
161 2zr9_A Protein RECA, recombina 99.1 1E-10 3.5E-15 108.7 7.6 78 136-213 126-236 (349)
162 3euj_A Chromosome partition pr 99.1 1.6E-11 5.5E-16 118.4 1.5 48 4-55 21-68 (483)
163 1qhl_A Protein (cell division 99.0 1.1E-11 3.8E-16 108.6 -3.4 58 7-68 22-91 (227)
164 3k1j_A LON protease, ATP-depen 99.0 4.3E-12 1.5E-16 125.9 -6.8 153 5-174 52-227 (604)
165 3hr8_A Protein RECA; alpha and 98.9 6.8E-10 2.3E-14 103.3 5.0 70 9-81 57-128 (356)
166 2f9l_A RAB11B, member RAS onco 98.9 3.2E-10 1.1E-14 95.8 1.6 36 138-175 130-165 (199)
167 2qtf_A Protein HFLX, GTP-bindi 98.9 6.5E-09 2.2E-13 97.0 9.2 148 15-177 181-353 (364)
168 4eun_A Thermoresistant glucoki 98.8 9.4E-11 3.2E-15 99.8 -3.7 54 9-69 25-81 (200)
169 3kta_A Chromosome segregation 98.7 6.1E-09 2.1E-13 86.7 3.8 35 4-39 18-52 (182)
170 2j41_A Guanylate kinase; GMP, 98.7 4.2E-09 1.4E-13 89.1 2.5 31 9-39 2-32 (207)
171 4a1f_A DNAB helicase, replicat 98.7 2.2E-08 7.4E-13 92.5 6.4 122 9-188 42-164 (338)
172 4e22_A Cytidylate kinase; P-lo 98.7 1.8E-09 6.1E-14 95.5 -1.3 57 10-69 24-96 (252)
173 3a00_A Guanylate kinase, GMP k 98.6 6.7E-09 2.3E-13 87.3 1.3 27 13-39 1-27 (186)
174 2xau_A PRE-mRNA-splicing facto 98.6 2.2E-08 7.4E-13 102.0 4.8 73 128-202 189-263 (773)
175 3uie_A Adenylyl-sulfate kinase 98.6 1.9E-09 6.4E-14 91.7 -2.7 43 10-56 22-66 (200)
176 2dhr_A FTSH; AAA+ protein, hex 98.6 8.2E-11 2.8E-15 114.1 -12.8 124 5-158 58-187 (499)
177 2ce7_A Cell division protein F 98.6 6.5E-08 2.2E-12 93.2 7.4 59 132-190 93-164 (476)
178 1kgd_A CASK, peripheral plasma 98.6 1.1E-08 3.6E-13 85.7 1.5 37 11-49 3-39 (180)
179 1zu4_A FTSY; GTPase, signal re 98.6 9.6E-09 3.3E-13 94.2 0.9 76 4-82 96-185 (320)
180 2e87_A Hypothetical protein PH 98.6 3.6E-08 1.2E-12 91.4 4.4 61 128-191 230-293 (357)
181 1jjv_A Dephospho-COA kinase; P 98.5 1.1E-08 3.9E-13 86.8 0.3 71 130-206 60-132 (206)
182 2vp4_A Deoxynucleoside kinase; 98.4 8.3E-08 2.8E-12 83.3 2.1 39 9-54 16-54 (230)
183 2dy1_A Elongation factor G; tr 98.4 5.3E-08 1.8E-12 97.6 0.5 131 7-191 3-137 (665)
184 3vaa_A Shikimate kinase, SK; s 98.4 1.7E-07 5.8E-12 79.4 3.5 36 2-37 14-49 (199)
185 1fnn_A CDC6P, cell division co 98.3 9.2E-07 3.2E-11 81.4 8.4 44 146-190 124-169 (389)
186 3tau_A Guanylate kinase, GMP k 98.3 2.6E-07 8.8E-12 79.0 4.0 29 11-39 6-34 (208)
187 1v5w_A DMC1, meiotic recombina 98.3 2.4E-06 8.3E-11 78.7 10.5 138 9-190 118-274 (343)
188 1ega_A Protein (GTP-binding pr 98.3 1.7E-07 5.9E-12 84.9 2.5 65 130-202 101-170 (301)
189 3t34_A Dynamin-related protein 98.3 3.8E-06 1.3E-10 77.7 11.1 57 130-188 155-212 (360)
190 2z4s_A Chromosomal replication 98.3 5.5E-07 1.9E-11 85.9 5.0 69 146-215 193-263 (440)
191 3b9p_A CG5977-PA, isoform A; A 98.3 9.8E-06 3.4E-10 72.3 12.9 75 131-205 97-187 (297)
192 3bh0_A DNAB-like replicative h 98.2 6.1E-06 2.1E-10 75.1 11.2 55 130-189 134-190 (315)
193 1rz3_A Hypothetical protein rb 98.2 1.4E-07 4.8E-12 80.2 0.2 41 10-53 19-59 (201)
194 3ney_A 55 kDa erythrocyte memb 98.2 3.8E-07 1.3E-11 77.9 2.7 31 8-38 14-44 (197)
195 1knq_A Gluconate kinase; ALFA/ 98.2 3.2E-07 1.1E-11 75.6 1.8 37 11-54 6-42 (175)
196 2z43_A DNA repair and recombin 98.2 3.8E-06 1.3E-10 76.7 8.7 139 9-190 103-258 (324)
197 2qt1_A Nicotinamide riboside k 98.2 8.4E-07 2.9E-11 75.3 3.6 31 8-38 16-46 (207)
198 3cr8_A Sulfate adenylyltranfer 98.1 4.5E-07 1.5E-11 88.9 1.5 43 9-54 365-409 (552)
199 2pez_A Bifunctional 3'-phospho 98.1 1.8E-07 6E-12 77.7 -1.6 40 11-54 3-44 (179)
200 1cke_A CK, MSSA, protein (cyti 98.1 9.1E-08 3.1E-12 82.1 -3.5 55 12-69 4-74 (227)
201 1kag_A SKI, shikimate kinase I 98.1 9.4E-07 3.2E-11 72.5 2.7 27 12-38 3-29 (173)
202 3kl4_A SRP54, signal recogniti 98.1 7.2E-06 2.5E-10 78.0 8.6 124 12-188 96-222 (433)
203 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 2.5E-06 8.4E-11 69.3 4.1 29 5-34 16-44 (149)
204 1ypw_A Transitional endoplasmi 98.1 3E-06 1E-10 86.7 5.5 33 7-39 232-264 (806)
205 1svm_A Large T antigen; AAA+ f 98.0 1.1E-06 3.7E-11 82.3 0.8 134 5-158 161-312 (377)
206 3nwj_A ATSK2; P loop, shikimat 98.0 6.4E-07 2.2E-11 79.2 -1.2 33 5-37 37-72 (250)
207 2qby_A CDC6 homolog 1, cell di 97.9 3.1E-06 1E-10 77.5 2.8 29 11-39 43-71 (386)
208 3tqc_A Pantothenate kinase; bi 97.9 3.7E-06 1.3E-10 77.0 3.1 25 15-39 94-118 (321)
209 3cf0_A Transitional endoplasmi 97.9 3.2E-05 1.1E-09 69.6 9.0 29 9-37 45-73 (301)
210 1mky_A Probable GTP-binding pr 97.9 9.3E-06 3.2E-10 77.2 5.6 69 15-83 182-263 (439)
211 2www_A Methylmalonic aciduria 97.8 3.2E-06 1.1E-10 78.2 1.2 40 12-54 73-112 (349)
212 3qks_A DNA double-strand break 97.8 9.6E-06 3.3E-10 69.1 4.1 29 5-34 16-44 (203)
213 3lxx_A GTPase IMAP family memb 97.8 0.00013 4.3E-09 63.1 10.9 43 146-188 111-154 (239)
214 3llm_A ATP-dependent RNA helic 97.8 4.1E-06 1.4E-10 72.6 1.2 66 131-200 162-229 (235)
215 1u94_A RECA protein, recombina 97.8 0.00035 1.2E-08 64.7 14.3 74 136-209 128-234 (356)
216 2p67_A LAO/AO transport system 97.8 2.2E-06 7.7E-11 78.9 -1.6 46 5-53 48-93 (341)
217 2gj8_A MNME, tRNA modification 97.7 3.1E-05 1.1E-09 63.5 5.4 27 11-37 2-28 (172)
218 2q6t_A DNAB replication FORK h 97.7 0.00019 6.6E-09 68.1 11.3 121 9-188 196-318 (444)
219 3m6a_A ATP-dependent protease 97.7 1.1E-05 3.7E-10 78.9 2.6 39 12-53 107-145 (543)
220 1m7g_A Adenylylsulfate kinase; 97.7 8E-06 2.7E-10 69.5 0.7 42 9-53 21-64 (211)
221 4eaq_A DTMP kinase, thymidylat 97.7 1.6E-05 5.5E-10 69.0 2.5 35 5-39 15-52 (229)
222 2qor_A Guanylate kinase; phosp 97.6 1.8E-05 6E-10 67.0 2.6 29 10-38 9-37 (204)
223 2i1q_A DNA repair and recombin 97.6 0.00036 1.2E-08 63.1 11.5 71 136-206 190-290 (322)
224 1l8q_A Chromosomal replication 97.6 0.00011 3.8E-09 66.4 8.0 44 146-190 97-141 (324)
225 2if2_A Dephospho-COA kinase; a 97.6 2.6E-05 9E-10 65.6 2.9 21 15-35 3-23 (204)
226 3h4m_A Proteasome-activating n 97.6 0.00015 5.2E-09 64.0 8.0 27 11-37 49-75 (285)
227 1np6_A Molybdopterin-guanine d 97.6 2.6E-05 8.7E-10 65.1 2.5 39 14-52 7-45 (174)
228 1y63_A LMAJ004144AAA protein; 97.6 3.2E-05 1.1E-09 64.4 3.1 32 5-36 2-33 (184)
229 2ffh_A Protein (FFH); SRP54, s 97.5 1.9E-05 6.6E-10 74.9 1.3 47 4-55 91-137 (425)
230 2yvu_A Probable adenylyl-sulfa 97.5 3.5E-05 1.2E-09 63.9 2.6 33 7-39 7-39 (186)
231 3auy_A DNA double-strand break 97.5 5.4E-05 1.8E-09 70.3 3.4 29 5-34 18-46 (371)
232 2p5t_B PEZT; postsegregational 97.4 5.3E-05 1.8E-09 66.4 2.7 41 9-54 28-68 (253)
233 2wjg_A FEOB, ferrous iron tran 97.4 0.00011 3.6E-09 60.3 4.2 22 15-36 9-30 (188)
234 2wji_A Ferrous iron transport 97.4 7.8E-05 2.7E-09 60.3 3.3 24 15-38 5-28 (165)
235 3t61_A Gluconokinase; PSI-biol 97.4 7.5E-05 2.6E-09 62.7 2.8 25 13-37 18-42 (202)
236 1j8m_F SRP54, signal recogniti 97.4 1.7E-05 5.7E-10 71.8 -1.4 45 6-54 92-136 (297)
237 3cm0_A Adenylate kinase; ATP-b 97.4 9.6E-05 3.3E-09 61.0 3.3 26 11-36 2-27 (186)
238 2ohf_A Protein OLA1, GTP-bindi 97.3 7.3E-05 2.5E-09 70.2 2.8 44 6-52 15-69 (396)
239 2b8t_A Thymidine kinase; deoxy 97.3 0.00017 5.7E-09 62.6 4.7 53 147-205 89-150 (223)
240 3d8b_A Fidgetin-like protein 1 97.3 0.0017 5.9E-08 59.7 11.2 26 12-37 116-141 (357)
241 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.001 3.5E-08 57.6 9.1 27 11-37 37-63 (262)
242 1q57_A DNA primase/helicase; d 97.3 0.0045 1.5E-07 59.5 14.4 70 135-205 340-440 (503)
243 3kb2_A SPBC2 prophage-derived 97.3 0.00015 5E-09 58.8 3.2 23 15-37 3-25 (173)
244 1q3t_A Cytidylate kinase; nucl 97.3 0.00015 5E-09 62.7 3.4 29 8-36 11-39 (236)
245 1m2o_B GTP-binding protein SAR 97.2 0.00026 8.7E-09 58.8 4.8 31 5-36 16-46 (190)
246 1qhx_A CPT, protein (chloramph 97.2 0.00018 6E-09 58.9 3.6 26 13-38 3-28 (178)
247 2zej_A Dardarin, leucine-rich 97.2 0.00013 4.6E-09 60.0 2.9 24 15-38 4-27 (184)
248 3cmw_A Protein RECA, recombina 97.2 0.00063 2.2E-08 74.1 8.6 28 10-37 729-756 (1706)
249 1lv7_A FTSH; alpha/beta domain 97.2 0.00014 4.8E-09 63.4 2.5 24 15-38 47-70 (257)
250 2qag_A Septin-2, protein NEDD5 97.2 4.8E-05 1.6E-09 70.5 -0.6 24 16-39 40-63 (361)
251 1kht_A Adenylate kinase; phosp 97.1 0.00024 8.1E-09 58.5 3.5 26 12-37 2-27 (192)
252 3r20_A Cytidylate kinase; stru 97.1 0.00023 8E-09 62.1 3.4 23 14-36 10-32 (233)
253 1gvn_B Zeta; postsegregational 97.1 0.00025 8.6E-09 63.5 3.6 36 11-51 31-66 (287)
254 3ice_A Transcription terminati 97.1 0.00011 3.7E-09 68.9 1.2 33 5-37 166-198 (422)
255 1f6b_A SAR1; gtpases, N-termin 97.1 0.00012 4.2E-09 61.2 1.4 46 6-52 19-69 (198)
256 2ze6_A Isopentenyl transferase 97.1 0.00025 8.5E-09 62.3 3.4 24 14-37 2-25 (253)
257 2rhm_A Putative kinase; P-loop 97.1 0.00025 8.6E-09 58.6 3.0 26 11-36 3-28 (193)
258 3lw7_A Adenylate kinase relate 97.1 0.00028 9.6E-09 56.8 3.2 19 15-33 3-21 (179)
259 1vht_A Dephospho-COA kinase; s 97.1 0.00031 1.1E-08 59.6 3.6 24 12-35 3-26 (218)
260 1xp8_A RECA protein, recombina 97.0 0.0011 3.7E-08 61.6 7.3 27 9-35 70-96 (366)
261 1ex7_A Guanylate kinase; subst 97.0 0.00033 1.1E-08 58.9 3.1 24 15-38 3-26 (186)
262 2ga8_A Hypothetical 39.9 kDa p 97.0 8.9E-05 3.1E-09 68.6 -0.5 32 6-37 15-48 (359)
263 2jaq_A Deoxyguanosine kinase; 97.0 0.00036 1.2E-08 58.0 3.3 23 15-37 2-24 (205)
264 2v54_A DTMP kinase, thymidylat 97.0 0.00044 1.5E-08 57.7 3.7 26 12-37 3-28 (204)
265 3trf_A Shikimate kinase, SK; a 97.0 0.0004 1.4E-08 57.1 3.5 25 12-36 4-28 (185)
266 1sxj_C Activator 1 40 kDa subu 97.0 0.00024 8.3E-09 64.7 2.0 32 8-39 39-72 (340)
267 3iij_A Coilin-interacting nucl 96.9 0.00038 1.3E-08 57.2 3.0 26 11-36 9-34 (180)
268 2plr_A DTMP kinase, probable t 96.9 0.0005 1.7E-08 57.5 3.7 28 12-39 3-30 (213)
269 1ly1_A Polynucleotide kinase; 96.9 0.00046 1.6E-08 56.2 3.4 22 14-35 3-24 (181)
270 1via_A Shikimate kinase; struc 96.9 0.00043 1.5E-08 56.7 3.1 23 15-37 6-28 (175)
271 3k53_A Ferrous iron transport 96.9 0.00037 1.3E-08 61.5 2.7 47 156-203 144-190 (271)
272 1gtv_A TMK, thymidylate kinase 96.9 0.00021 7.2E-09 60.1 1.0 25 15-39 2-26 (214)
273 1uf9_A TT1252 protein; P-loop, 96.9 0.00051 1.8E-08 57.1 3.3 24 13-36 8-31 (203)
274 2wwf_A Thymidilate kinase, put 96.9 0.00056 1.9E-08 57.4 3.3 27 11-37 8-34 (212)
275 2c95_A Adenylate kinase 1; tra 96.8 0.00059 2E-08 56.4 3.3 26 11-36 7-32 (196)
276 1tev_A UMP-CMP kinase; ploop, 96.8 0.00069 2.4E-08 55.7 3.6 24 13-36 3-26 (196)
277 3ihw_A Centg3; RAS, centaurin, 96.8 0.0013 4.3E-08 54.2 5.2 22 15-36 22-43 (184)
278 3cmu_A Protein RECA, recombina 96.8 0.0031 1.1E-07 69.8 9.3 73 136-208 448-553 (2050)
279 1nn5_A Similar to deoxythymidy 96.8 0.00065 2.2E-08 57.0 3.2 27 11-37 7-33 (215)
280 3bgw_A DNAB-like replicative h 96.8 0.0044 1.5E-07 58.9 9.3 54 130-188 263-318 (444)
281 1nks_A Adenylate kinase; therm 96.8 0.00063 2.2E-08 55.9 3.0 24 15-38 3-26 (194)
282 3cmw_A Protein RECA, recombina 96.8 0.015 5.1E-07 63.5 14.2 71 138-208 450-553 (1706)
283 2ged_A SR-beta, signal recogni 96.8 0.00067 2.3E-08 55.8 3.0 23 15-37 50-72 (193)
284 1xjc_A MOBB protein homolog; s 96.8 0.00075 2.6E-08 55.9 3.2 26 14-39 5-30 (169)
285 3ake_A Cytidylate kinase; CMP 96.8 0.00072 2.4E-08 56.5 3.2 23 15-37 4-26 (208)
286 3b1v_A Ferrous iron uptake tra 96.7 0.0012 4.2E-08 58.6 4.6 23 15-37 5-27 (272)
287 4ag6_A VIRB4 ATPase, type IV s 96.7 0.0005 1.7E-08 63.9 2.1 45 147-192 262-309 (392)
288 2z0h_A DTMP kinase, thymidylat 96.7 0.00085 2.9E-08 55.5 3.3 23 15-37 2-24 (197)
289 1z2a_A RAS-related protein RAB 96.7 0.00081 2.8E-08 53.5 2.9 23 15-37 7-29 (168)
290 2nzj_A GTP-binding protein REM 96.7 0.0009 3.1E-08 53.7 3.2 23 15-37 6-28 (175)
291 2erx_A GTP-binding protein DI- 96.7 0.00093 3.2E-08 53.3 3.1 22 15-36 5-26 (172)
292 1jal_A YCHF protein; nucleotid 96.7 0.0015 5.3E-08 60.5 4.9 39 13-51 2-48 (363)
293 2vli_A Antibiotic resistance p 96.6 0.00071 2.4E-08 55.4 2.4 26 12-37 4-29 (183)
294 1kao_A RAP2A; GTP-binding prot 96.6 0.00093 3.2E-08 52.9 3.0 23 15-37 5-27 (167)
295 1aky_A Adenylate kinase; ATP:A 96.6 0.0011 3.8E-08 56.2 3.6 26 11-36 2-27 (220)
296 2dyk_A GTP-binding protein; GT 96.6 0.00096 3.3E-08 52.8 3.0 23 15-37 3-25 (161)
297 1u8z_A RAS-related protein RAL 96.6 0.00096 3.3E-08 52.9 2.9 23 15-37 6-28 (168)
298 2ce2_X GTPase HRAS; signaling 96.6 0.00084 2.9E-08 53.0 2.6 23 15-37 5-27 (166)
299 2bwj_A Adenylate kinase 5; pho 96.6 0.001 3.4E-08 55.1 3.2 26 11-36 10-35 (199)
300 3q85_A GTP-binding protein REM 96.6 0.001 3.6E-08 53.1 3.1 22 16-37 5-26 (169)
301 3q72_A GTP-binding protein RAD 96.6 0.00074 2.5E-08 53.8 2.2 24 15-38 4-27 (166)
302 1z0j_A RAB-22, RAS-related pro 96.6 0.001 3.5E-08 53.0 3.0 23 15-37 8-30 (170)
303 1z08_A RAS-related protein RAB 96.6 0.001 3.6E-08 53.1 3.0 23 15-37 8-30 (170)
304 1ek0_A Protein (GTP-binding pr 96.6 0.0011 3.6E-08 52.8 2.9 23 15-37 5-27 (170)
305 1zd8_A GTP:AMP phosphotransfer 96.6 0.0011 3.7E-08 56.7 3.1 26 11-36 5-30 (227)
306 1ky3_A GTP-binding protein YPT 96.6 0.0011 3.7E-08 53.5 3.0 23 15-37 10-32 (182)
307 1wms_A RAB-9, RAB9, RAS-relate 96.6 0.0011 3.8E-08 53.4 3.0 23 15-37 9-31 (177)
308 3tw8_B RAS-related protein RAB 96.6 0.00095 3.3E-08 53.8 2.6 23 15-37 11-33 (181)
309 2cdn_A Adenylate kinase; phosp 96.6 0.0011 3.8E-08 55.4 3.1 26 11-36 18-43 (201)
310 3iev_A GTP-binding protein ERA 96.6 0.001 3.4E-08 60.1 3.0 23 15-37 12-34 (308)
311 3fb4_A Adenylate kinase; psych 96.6 0.0012 4.1E-08 55.7 3.3 22 15-36 2-23 (216)
312 1c1y_A RAS-related protein RAP 96.6 0.0011 3.8E-08 52.6 2.9 23 15-37 5-27 (167)
313 1fzq_A ADP-ribosylation factor 96.6 0.00085 2.9E-08 55.0 2.2 23 14-36 17-39 (181)
314 1g16_A RAS-related protein SEC 96.6 0.00099 3.4E-08 53.1 2.6 23 15-37 5-27 (170)
315 1zuh_A Shikimate kinase; alpha 96.5 0.0014 4.7E-08 53.1 3.4 23 14-36 8-30 (168)
316 2pbr_A DTMP kinase, thymidylat 96.5 0.0013 4.4E-08 54.1 3.3 23 15-37 2-24 (195)
317 3lxw_A GTPase IMAP family memb 96.5 0.0012 4E-08 57.6 3.1 24 15-38 23-46 (247)
318 1svi_A GTP-binding protein YSX 96.5 0.001 3.4E-08 54.7 2.5 23 15-37 25-47 (195)
319 1e6c_A Shikimate kinase; phosp 96.5 0.0011 3.9E-08 53.6 2.8 23 14-36 3-25 (173)
320 2lkc_A Translation initiation 96.5 0.0017 5.8E-08 52.3 3.7 26 12-37 7-32 (178)
321 3pqc_A Probable GTP-binding pr 96.5 0.0011 3.7E-08 54.2 2.5 23 15-37 25-47 (195)
322 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0013 4.5E-08 53.4 3.0 23 15-37 6-28 (189)
323 2fn4_A P23, RAS-related protei 96.5 0.0011 3.9E-08 53.3 2.6 22 15-36 11-32 (181)
324 3bos_A Putative DNA replicatio 96.5 0.0015 5.1E-08 55.3 3.4 27 12-38 51-77 (242)
325 1r2q_A RAS-related protein RAB 96.5 0.0013 4.6E-08 52.2 2.9 22 15-36 8-29 (170)
326 2pt5_A Shikimate kinase, SK; a 96.5 0.0016 5.3E-08 52.6 3.4 22 15-36 2-23 (168)
327 3clv_A RAB5 protein, putative; 96.5 0.0013 4.6E-08 53.8 3.0 23 15-37 9-31 (208)
328 3dl0_A Adenylate kinase; phosp 96.5 0.0015 5E-08 55.2 3.3 22 15-36 2-23 (216)
329 1ukz_A Uridylate kinase; trans 96.5 0.0016 5.5E-08 54.3 3.5 24 13-36 15-38 (203)
330 2hxs_A RAB-26, RAS-related pro 96.5 0.0015 5.2E-08 52.6 3.2 23 15-37 8-30 (178)
331 1upt_A ARL1, ADP-ribosylation 96.5 0.0014 4.8E-08 52.3 2.9 23 14-36 8-30 (171)
332 3t1o_A Gliding protein MGLA; G 96.5 0.0015 5.1E-08 53.4 3.1 25 15-39 16-40 (198)
333 2cxx_A Probable GTP-binding pr 96.5 0.0012 4E-08 53.8 2.5 22 16-37 4-25 (190)
334 3bc1_A RAS-related protein RAB 96.5 0.0014 4.8E-08 53.3 2.9 23 15-37 13-35 (195)
335 2oil_A CATX-8, RAS-related pro 96.5 0.0014 4.8E-08 53.8 3.0 23 15-37 27-49 (193)
336 1qf9_A UMP/CMP kinase, protein 96.4 0.0016 5.3E-08 53.5 3.2 24 13-36 6-29 (194)
337 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0018 6.3E-08 56.7 3.7 26 12-37 3-28 (260)
338 2iyv_A Shikimate kinase, SK; t 96.4 0.0013 4.6E-08 54.0 2.6 23 14-36 3-25 (184)
339 1r8s_A ADP-ribosylation factor 96.4 0.0015 5.3E-08 51.8 2.9 21 16-36 3-23 (164)
340 1zak_A Adenylate kinase; ATP:A 96.4 0.0013 4.5E-08 55.9 2.6 25 12-36 4-28 (222)
341 2g6b_A RAS-related protein RAB 96.4 0.0016 5.6E-08 52.5 2.9 23 15-37 12-34 (180)
342 1moz_A ARL1, ADP-ribosylation 96.4 0.00085 2.9E-08 54.4 1.2 23 13-35 18-40 (183)
343 2a9k_A RAS-related protein RAL 96.4 0.0016 5.6E-08 52.6 2.9 23 15-37 20-42 (187)
344 1wf3_A GTP-binding protein; GT 96.4 0.0017 5.9E-08 58.5 3.3 27 10-37 5-31 (301)
345 1z0f_A RAB14, member RAS oncog 96.4 0.0017 5.7E-08 52.2 2.9 23 15-37 17-39 (179)
346 1uj2_A Uridine-cytidine kinase 96.4 0.0018 6E-08 56.4 3.3 24 14-37 23-46 (252)
347 4fcw_A Chaperone protein CLPB; 96.4 0.0019 6.3E-08 57.5 3.5 27 13-39 47-73 (311)
348 2y8e_A RAB-protein 6, GH09086P 96.4 0.0015 5E-08 52.5 2.6 23 15-37 16-38 (179)
349 3con_A GTPase NRAS; structural 96.4 0.0017 5.9E-08 53.1 2.9 23 15-37 23-45 (190)
350 3iby_A Ferrous iron transport 96.4 0.0015 5.1E-08 57.4 2.7 23 15-37 3-25 (256)
351 2grj_A Dephospho-COA kinase; T 96.4 0.0019 6.7E-08 54.3 3.3 24 13-36 12-35 (192)
352 2efe_B Small GTP-binding prote 96.3 0.0018 6.2E-08 52.2 3.0 23 15-37 14-36 (181)
353 2dby_A GTP-binding protein; GD 96.3 0.0016 5.6E-08 60.4 2.9 21 16-36 4-24 (368)
354 3tlx_A Adenylate kinase 2; str 96.3 0.0023 7.8E-08 55.6 3.6 25 12-36 28-52 (243)
355 1nrj_B SR-beta, signal recogni 96.3 0.0018 6.3E-08 54.3 2.9 23 15-37 14-36 (218)
356 3t5d_A Septin-7; GTP-binding p 96.3 0.0014 4.8E-08 57.9 2.3 23 15-37 10-32 (274)
357 2bov_A RAla, RAS-related prote 96.3 0.0019 6.5E-08 53.4 2.9 23 15-37 16-38 (206)
358 1vg8_A RAS-related protein RAB 96.3 0.002 6.8E-08 53.4 3.0 23 15-37 10-32 (207)
359 2qmh_A HPR kinase/phosphorylas 96.3 0.0034 1.2E-07 53.4 4.4 29 8-36 29-57 (205)
360 2bme_A RAB4A, RAS-related prot 96.3 0.0018 6E-08 52.7 2.6 23 15-37 12-34 (186)
361 3tkl_A RAS-related protein RAB 96.3 0.002 6.9E-08 52.8 2.9 23 15-37 18-40 (196)
362 2gf9_A RAS-related protein RAB 96.3 0.002 7E-08 52.8 2.9 23 15-37 24-46 (189)
363 1jbk_A CLPB protein; beta barr 96.3 0.0026 9E-08 51.4 3.6 26 12-37 42-67 (195)
364 2w58_A DNAI, primosome compone 96.3 0.0025 8.4E-08 53.1 3.4 25 14-38 55-79 (202)
365 2xb4_A Adenylate kinase; ATP-b 96.3 0.0024 8.1E-08 54.6 3.3 22 15-36 2-23 (223)
366 2gf0_A GTP-binding protein DI- 96.2 0.0019 6.5E-08 53.1 2.6 22 15-36 10-31 (199)
367 3kkq_A RAS-related protein M-R 96.2 0.0022 7.5E-08 52.0 2.9 23 15-37 20-42 (183)
368 1ksh_A ARF-like protein 2; sma 96.2 0.0021 7.1E-08 52.4 2.8 26 12-37 17-42 (186)
369 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.0022 7.6E-08 51.9 2.9 22 15-36 7-28 (186)
370 3a1s_A Iron(II) transport prot 96.2 0.0022 7.6E-08 56.3 3.1 23 15-37 7-29 (258)
371 3cbq_A GTP-binding protein REM 96.2 0.0016 5.5E-08 54.2 2.1 22 15-36 25-46 (195)
372 1m7b_A RND3/RHOE small GTP-bin 96.2 0.002 6.8E-08 52.7 2.6 23 15-37 9-31 (184)
373 1a7j_A Phosphoribulokinase; tr 96.2 0.0012 4E-08 59.3 1.2 26 12-37 4-29 (290)
374 2xtp_A GTPase IMAP family memb 96.2 0.002 7E-08 56.0 2.8 23 15-37 24-46 (260)
375 2fg5_A RAB-22B, RAS-related pr 96.2 0.002 7E-08 53.0 2.6 23 15-37 25-47 (192)
376 1ko7_A HPR kinase/phosphatase; 96.2 0.0037 1.3E-07 56.8 4.5 31 5-36 137-167 (314)
377 4dhe_A Probable GTP-binding pr 96.2 0.0013 4.3E-08 55.5 1.3 23 15-37 31-53 (223)
378 2f6r_A COA synthase, bifunctio 96.2 0.0022 7.6E-08 57.0 3.0 23 13-35 75-97 (281)
379 1zbd_A Rabphilin-3A; G protein 96.2 0.0025 8.5E-08 52.8 3.1 23 15-37 10-32 (203)
380 1z06_A RAS-related protein RAB 96.2 0.0025 8.5E-08 52.2 3.0 23 15-37 22-44 (189)
381 2cjw_A GTP-binding protein GEM 96.2 0.0024 8.3E-08 52.9 2.9 22 15-36 8-29 (192)
382 3i8s_A Ferrous iron transport 96.2 0.0022 7.4E-08 56.8 2.8 23 15-37 5-27 (274)
383 3a8t_A Adenylate isopentenyltr 96.2 0.0043 1.5E-07 56.9 4.8 26 12-37 39-64 (339)
384 2wsm_A Hydrogenase expression/ 96.2 0.0024 8.1E-08 53.8 2.8 24 14-37 31-54 (221)
385 2a5j_A RAS-related protein RAB 96.2 0.0026 8.8E-08 52.3 3.0 23 15-37 23-45 (191)
386 3bwd_D RAC-like GTP-binding pr 96.1 0.0026 9E-08 51.3 2.9 23 15-37 10-32 (182)
387 3oes_A GTPase rhebl1; small GT 96.1 0.0022 7.7E-08 53.2 2.6 23 15-37 26-48 (201)
388 3t5g_A GTP-binding protein RHE 96.1 0.0024 8E-08 51.7 2.6 21 15-35 8-28 (181)
389 2il1_A RAB12; G-protein, GDP, 96.1 0.0024 8.1E-08 52.7 2.6 23 15-37 28-50 (192)
390 1zd9_A ADP-ribosylation factor 96.1 0.0027 9.3E-08 52.1 2.9 23 15-37 24-46 (188)
391 1jwy_B Dynamin A GTPase domain 96.1 0.0025 8.7E-08 56.9 3.0 23 15-37 26-48 (315)
392 3dz8_A RAS-related protein RAB 96.1 0.0024 8.1E-08 52.5 2.6 23 15-37 25-47 (191)
393 1x3s_A RAS-related protein RAB 96.1 0.0027 9.4E-08 51.8 2.9 23 15-37 17-39 (195)
394 2atv_A RERG, RAS-like estrogen 96.1 0.0028 9.6E-08 52.3 3.0 23 15-37 30-52 (196)
395 3reg_A RHO-like small GTPase; 96.1 0.0028 9.5E-08 52.2 2.9 23 15-37 25-47 (194)
396 1p5z_B DCK, deoxycytidine kina 96.1 0.0019 6.5E-08 56.5 2.0 34 3-37 15-48 (263)
397 3cph_A RAS-related protein SEC 96.1 0.0028 9.5E-08 52.7 2.9 25 13-37 20-44 (213)
398 2o52_A RAS-related protein RAB 96.1 0.0026 9E-08 52.9 2.7 23 15-37 27-49 (200)
399 1zj6_A ADP-ribosylation factor 96.1 0.0027 9.1E-08 52.0 2.7 23 14-36 17-39 (187)
400 4bas_A ADP-ribosylation factor 96.1 0.0026 9E-08 52.2 2.7 24 14-37 18-41 (199)
401 2bcg_Y Protein YP2, GTP-bindin 96.1 0.0025 8.6E-08 53.0 2.6 23 15-37 10-32 (206)
402 2p5s_A RAS and EF-hand domain 96.1 0.0029 1E-07 52.4 3.0 24 14-37 29-52 (199)
403 1ltq_A Polynucleotide kinase; 96.1 0.0033 1.1E-07 55.8 3.5 22 14-35 3-24 (301)
404 4edh_A DTMP kinase, thymidylat 96.1 0.0037 1.3E-07 53.4 3.7 29 11-39 4-32 (213)
405 3be4_A Adenylate kinase; malar 96.1 0.003 1E-07 53.6 3.1 26 12-37 4-29 (217)
406 2qu8_A Putative nucleolar GTP- 96.1 0.0027 9.2E-08 54.0 2.8 23 14-36 30-52 (228)
407 2f7s_A C25KG, RAS-related prot 96.1 0.0032 1.1E-07 52.7 3.2 23 15-37 27-49 (217)
408 1e4v_A Adenylate kinase; trans 96.1 0.003 1E-07 53.4 2.9 22 15-36 2-23 (214)
409 2h57_A ADP-ribosylation factor 96.1 0.002 6.8E-08 52.9 1.8 23 15-37 23-45 (190)
410 2ew1_A RAS-related protein RAB 96.1 0.0026 9E-08 53.3 2.6 23 15-37 28-50 (201)
411 3llu_A RAS-related GTP-binding 96.0 0.0031 1.1E-07 52.2 3.0 25 15-39 22-46 (196)
412 2iwr_A Centaurin gamma 1; ANK 96.0 0.0024 8.3E-08 51.5 2.2 22 15-36 9-30 (178)
413 2h17_A ADP-ribosylation factor 96.0 0.0025 8.5E-08 51.9 2.3 22 15-36 23-44 (181)
414 2q3h_A RAS homolog gene family 96.0 0.0035 1.2E-07 51.8 3.1 25 13-37 20-44 (201)
415 2fv8_A H6, RHO-related GTP-bin 96.0 0.003 1E-07 52.7 2.6 23 15-37 27-49 (207)
416 3c5c_A RAS-like protein 12; GD 96.0 0.0035 1.2E-07 51.5 3.0 23 15-37 23-45 (187)
417 2p65_A Hypothetical protein PF 96.0 0.0034 1.2E-07 50.7 2.8 25 13-37 43-67 (187)
418 1ak2_A Adenylate kinase isoenz 96.0 0.0044 1.5E-07 53.1 3.6 26 11-36 14-39 (233)
419 1sky_E F1-ATPase, F1-ATP synth 95.9 0.0044 1.5E-07 59.3 3.8 30 9-38 147-176 (473)
420 2fh5_B SR-beta, signal recogni 95.9 0.0036 1.2E-07 52.3 2.9 23 15-37 9-31 (214)
421 1gwn_A RHO-related GTP-binding 95.9 0.0032 1.1E-07 52.9 2.6 23 15-37 30-52 (205)
422 1njg_A DNA polymerase III subu 95.9 0.0045 1.5E-07 51.8 3.5 42 147-191 126-167 (250)
423 2aka_B Dynamin-1; fusion prote 95.9 0.003 1E-07 55.8 2.5 23 15-37 28-50 (299)
424 2j1l_A RHO-related GTP-binding 95.9 0.0035 1.2E-07 52.8 2.8 22 15-36 36-57 (214)
425 3d3q_A TRNA delta(2)-isopenten 95.9 0.0039 1.3E-07 57.3 3.3 24 14-37 8-31 (340)
426 2fu5_C RAS-related protein RAB 95.9 0.0023 8E-08 51.9 1.6 22 15-36 10-31 (183)
427 2h92_A Cytidylate kinase; ross 95.9 0.003 1E-07 53.3 2.4 25 13-37 3-27 (219)
428 3v9p_A DTMP kinase, thymidylat 95.9 0.0033 1.1E-07 54.4 2.6 29 10-38 22-50 (227)
429 3zvl_A Bifunctional polynucleo 95.9 0.0038 1.3E-07 58.7 3.3 26 11-36 256-281 (416)
430 2zts_A Putative uncharacterize 95.9 0.0058 2E-07 52.1 4.0 61 145-205 133-206 (251)
431 3lv8_A DTMP kinase, thymidylat 95.9 0.0042 1.4E-07 54.1 3.2 28 12-39 26-53 (236)
432 3cmu_A Protein RECA, recombina 95.9 0.013 4.3E-07 65.0 7.5 30 9-38 728-757 (2050)
433 3exa_A TRNA delta(2)-isopenten 95.9 0.0054 1.9E-07 55.8 4.0 25 13-37 3-27 (322)
434 2gco_A H9, RHO-related GTP-bin 95.9 0.0036 1.2E-07 52.0 2.6 23 15-37 27-49 (201)
435 3umf_A Adenylate kinase; rossm 95.9 0.0051 1.7E-07 52.9 3.5 26 11-36 27-52 (217)
436 3def_A T7I23.11 protein; chlor 95.8 0.0039 1.3E-07 54.6 2.8 23 15-37 38-60 (262)
437 2b6h_A ADP-ribosylation factor 95.8 0.0034 1.1E-07 51.9 2.2 23 14-36 30-52 (192)
438 2atx_A Small GTP binding prote 95.8 0.0041 1.4E-07 51.0 2.6 22 15-36 20-41 (194)
439 3tqf_A HPR(Ser) kinase; transf 95.8 0.0082 2.8E-07 50.0 4.4 29 7-35 10-38 (181)
440 1h65_A Chloroplast outer envel 95.8 0.0041 1.4E-07 54.6 2.7 23 15-37 41-63 (270)
441 4tmk_A Protein (thymidylate ki 95.8 0.0053 1.8E-07 52.5 3.2 28 12-39 2-29 (213)
442 2g3y_A GTP-binding protein GEM 95.8 0.0051 1.8E-07 52.3 3.2 22 15-36 39-60 (211)
443 3crm_A TRNA delta(2)-isopenten 95.8 0.0052 1.8E-07 56.0 3.3 24 14-37 6-29 (323)
444 2ocp_A DGK, deoxyguanosine kin 95.7 0.0057 1.9E-07 52.7 3.3 26 13-38 2-27 (241)
445 3ld9_A DTMP kinase, thymidylat 95.7 0.0066 2.3E-07 52.4 3.7 28 11-38 19-46 (223)
446 2hf9_A Probable hydrogenase ni 95.7 0.005 1.7E-07 52.0 2.8 24 14-37 39-62 (226)
447 4djt_A GTP-binding nuclear pro 95.7 0.0022 7.4E-08 53.9 0.5 22 15-36 13-34 (218)
448 4dcu_A GTP-binding protein ENG 95.7 0.0044 1.5E-07 58.9 2.7 22 15-36 25-46 (456)
449 3tmk_A Thymidylate kinase; pho 95.7 0.0058 2E-07 52.4 3.2 29 11-39 3-31 (216)
450 2yc2_C IFT27, small RAB-relate 95.6 0.0023 8E-08 52.8 0.5 22 15-36 22-43 (208)
451 2hup_A RAS-related protein RAB 95.6 0.0051 1.7E-07 51.2 2.6 23 15-37 31-53 (201)
452 3cnl_A YLQF, putative uncharac 95.6 0.0055 1.9E-07 54.0 3.0 25 15-39 101-125 (262)
453 1ypw_A Transitional endoplasmi 95.6 0.0018 6.2E-08 66.1 -0.3 32 7-38 505-536 (806)
454 2orv_A Thymidine kinase; TP4A 95.6 0.036 1.2E-06 48.1 8.0 53 146-205 89-150 (234)
455 2orw_A Thymidine kinase; TMTK, 95.6 0.0068 2.3E-07 50.5 3.2 54 147-206 76-138 (184)
456 3euj_A Chromosome partition pr 95.6 0.02 6.7E-07 55.0 6.8 71 127-205 377-464 (483)
457 3q3j_B RHO-related GTP-binding 95.6 0.0062 2.1E-07 51.3 2.9 22 15-36 29-50 (214)
458 2x77_A ADP-ribosylation factor 95.6 0.0034 1.2E-07 51.3 1.2 23 13-35 22-44 (189)
459 3cpj_B GTP-binding protein YPT 95.6 0.0056 1.9E-07 51.7 2.7 23 15-37 15-37 (223)
460 4gzl_A RAS-related C3 botulinu 95.6 0.0056 1.9E-07 51.1 2.6 23 14-36 31-53 (204)
461 3sr0_A Adenylate kinase; phosp 95.5 0.0073 2.5E-07 51.3 3.3 22 15-36 2-23 (206)
462 3foz_A TRNA delta(2)-isopenten 95.5 0.0086 3E-07 54.3 3.7 25 13-37 10-34 (316)
463 2j0v_A RAC-like GTP-binding pr 95.5 0.0062 2.1E-07 50.7 2.6 23 15-37 11-33 (212)
464 1sxj_D Activator 1 41 kDa subu 95.4 0.007 2.4E-07 54.5 2.9 52 147-201 133-184 (353)
465 2chg_A Replication factor C sm 95.3 0.009 3.1E-07 49.3 3.1 41 147-190 102-142 (226)
466 3n70_A Transport activator; si 95.3 0.0087 3E-07 47.4 2.8 41 147-190 76-116 (145)
467 3eph_A TRNA isopentenyltransfe 95.3 0.0094 3.2E-07 56.0 3.3 25 13-37 2-26 (409)
468 2v1u_A Cell division control p 95.3 0.0074 2.5E-07 54.8 2.5 27 11-37 42-68 (387)
469 2r62_A Cell division protease 95.2 0.0044 1.5E-07 54.0 0.9 22 16-37 47-68 (268)
470 3syl_A Protein CBBX; photosynt 95.2 0.011 3.6E-07 52.5 3.2 26 12-37 66-91 (309)
471 3p32_A Probable GTPase RV1496/ 95.2 0.01 3.6E-07 54.4 3.2 26 13-38 79-104 (355)
472 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.013 4.6E-07 53.4 3.7 28 8-35 118-145 (331)
473 1wxq_A GTP-binding protein; st 95.1 0.0096 3.3E-07 55.7 2.8 22 16-37 3-24 (397)
474 1xwi_A SKD1 protein; VPS4B, AA 95.1 0.012 4.1E-07 53.2 3.4 27 11-37 43-69 (322)
475 1d2n_A N-ethylmaleimide-sensit 95.0 0.013 4.4E-07 51.2 3.3 25 12-36 63-87 (272)
476 2hjg_A GTP-binding protein ENG 95.0 0.01 3.4E-07 56.0 2.7 23 15-37 5-27 (436)
477 3th5_A RAS-related C3 botulinu 94.0 0.0041 1.4E-07 51.6 0.0 21 15-35 32-52 (204)
478 2qgz_A Helicase loader, putati 94.9 0.015 5.1E-07 52.4 3.6 26 13-38 152-177 (308)
479 3uk6_A RUVB-like 2; hexameric 94.9 0.013 4.5E-07 53.2 3.2 27 12-38 69-95 (368)
480 3gj0_A GTP-binding nuclear pro 94.9 0.008 2.7E-07 50.6 1.6 22 15-36 17-39 (221)
481 3gmt_A Adenylate kinase; ssgci 94.9 0.014 4.7E-07 50.6 3.1 23 14-36 9-31 (230)
482 3r7w_A Gtpase1, GTP-binding pr 94.9 0.018 6.1E-07 51.7 3.9 25 13-37 3-27 (307)
483 3dm5_A SRP54, signal recogniti 94.9 0.016 5.5E-07 55.0 3.8 28 12-39 99-126 (443)
484 4hlc_A DTMP kinase, thymidylat 94.9 0.017 5.9E-07 48.9 3.6 26 13-38 2-27 (205)
485 1puj_A YLQF, conserved hypothe 94.9 0.015 5E-07 51.8 3.3 25 14-38 121-145 (282)
486 2x2e_A Dynamin-1; nitration, h 94.9 0.0078 2.7E-07 55.1 1.5 23 15-37 33-55 (353)
487 3geh_A MNME, tRNA modification 94.8 0.012 4E-07 56.3 2.6 24 13-36 224-247 (462)
488 3eie_A Vacuolar protein sortin 94.8 0.016 5.4E-07 52.2 3.4 25 12-36 50-74 (322)
489 1ofh_A ATP-dependent HSL prote 94.8 0.015 5E-07 51.3 3.0 25 13-37 50-74 (310)
490 3t15_A Ribulose bisphosphate c 94.7 0.014 4.9E-07 52.0 2.9 24 14-37 37-60 (293)
491 3ec1_A YQEH GTPase; atnos1, at 94.7 0.014 4.9E-07 53.9 2.9 25 12-36 161-185 (369)
492 3hws_A ATP-dependent CLP prote 94.7 0.015 5.3E-07 53.1 3.0 26 12-37 50-75 (363)
493 2qby_B CDC6 homolog 3, cell di 94.7 0.017 5.7E-07 52.6 3.2 25 13-37 45-69 (384)
494 2v3c_C SRP54, signal recogniti 94.6 0.011 3.6E-07 56.1 1.9 26 14-39 100-125 (432)
495 3l0i_B RAS-related protein RAB 94.6 0.0026 9E-08 52.7 -2.1 23 15-37 35-57 (199)
496 2qpt_A EH domain-containing pr 94.6 0.014 4.9E-07 56.9 2.7 24 14-37 66-89 (550)
497 2qen_A Walker-type ATPase; unk 94.6 0.02 6.9E-07 51.1 3.5 24 13-36 31-54 (350)
498 1f5n_A Interferon-induced guan 94.6 0.014 4.6E-07 57.5 2.4 24 14-37 39-62 (592)
499 3pvs_A Replication-associated 94.5 0.01 3.5E-07 56.4 1.4 25 15-39 52-76 (447)
500 3pfi_A Holliday junction ATP-d 94.4 0.02 6.9E-07 51.4 3.1 25 14-38 56-80 (338)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1e-54 Score=406.64 Aligned_cols=201 Identities=23% Similarity=0.387 Sum_probs=182.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. .+|+.||||||++.+++.+|
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T 121 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence 4899999999999999999999999999999999994 8999999999863 24678999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|+...... ...+..+++.++++.+||.+..+++ +.+|||||||||+|||||+.+|++||||||
T Consensus 122 V~env~~~~~~~~~---~~~~~~~~v~~lL~~vgL~~~~~~~--------~~~LSGGqkQRVaIArAL~~~P~lLLlDEP 190 (366)
T 3tui_C 122 VFGNVALPLELDNT---PKDEVKRRVTELLSLVGLGDKHDSY--------PSNLSGGQKQRVAIARALASNPKVLLCDQA 190 (366)
T ss_dssp HHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCGGGTTCC--------TTTSCHHHHHHHHHHHHTTTCCSEEEEEST
T ss_pred HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchHhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999998765432 2344556788999999999999988 566999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..++++|++++++.|+|||+||||+ .++..+||||++|++|++++.|++++++
T Consensus 191 Ts~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 191 TSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999666799999999997 5788999999999999999999999875
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.2e-54 Score=404.61 Aligned_cols=202 Identities=25% Similarity=0.366 Sum_probs=182.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.||||++++||+++|+||||||||||||+|+|+++|+ +|+|+++|+++.. ..++.||||||++.+||.+||+||+
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni 96 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENM 96 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHH
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHH
Confidence 4899999999999999999999999999999999994 8999999999864 2456799999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+.. ...+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 97 ~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~~~r~--------p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD 165 (381)
T 3rlf_A 97 SFGLKLAGA---KKEVINQRVNQVAEVLQLAHLLDRK--------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (381)
T ss_dssp THHHHHTTC---CHHHHHHHHHHHHHHTTCGGGTTCC--------GGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHcCCchhhcCC--------hhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCC
Confidence 998765432 3344556788999999999999998 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+..+.++++.|+++.++.|.|+|+||||+ .++..+||||++|++|+++..|++++++.
T Consensus 166 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 166 AALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999666699999999997 58999999999999999999999998763
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.1e-54 Score=404.01 Aligned_cols=202 Identities=26% Similarity=0.357 Sum_probs=179.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC----c--cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----G--KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~----~--~~~~~ig~v~Q~~~~~~~lTv 77 (290)
.||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. . ..++.||||||++.+||.+||
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV 97 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTV 97 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCH
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCH
Confidence 4899999999999999999999999999999999994 899999999982 2 245789999999999999999
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
+||+.|+...+.. ...+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||
T Consensus 98 ~eni~~~l~~~~~---~~~~~~~~v~~~l~~~gL~~~~~r~--------~~~LSGGq~QRValArAL~~~P~lLLLDEPt 166 (359)
T 3fvq_A 98 YRNIAYGLGNGKG---RTAQERQRIEAMLELTGISELAGRY--------PHELSGGQQQRAALARALAPDPELILLDEPF 166 (359)
T ss_dssp HHHHHTTSTTSSC---CSHHHHHHHHHHHHHHTCGGGTTSC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHHHHHcCC---ChHHHHHHHHHHHHHcCCchHhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9999997654321 2233456688999999999999998 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|||+..+.++++.|+++.++.|.|+|+||||+ .++..+||||++|++|+++..|+++++..
T Consensus 167 s~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 167 SALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999988887666799999999997 58899999999999999999999998753
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.9e-54 Score=382.55 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=173.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c----ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K----FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~~~~~~l 75 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. . .++.+|||||++.+++.+
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 98 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence 4799999999999999999999999999999999994 8999999999853 1 134699999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
||+||+.++............+..+++.++++.+++.+. .+++ +.+|||||||||+|||||+.+|++||||
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK--------PNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999997654321122334445678899999999875 4777 4559999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||+|||+.++..++++|++++++.|+|||+||||+ . +..+||++++|++|+++..++++++
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEECC--
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEcChhhh
Confidence 999999999999999999999655589999999997 3 4689999999999999999887653
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1e-53 Score=387.24 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=177.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC--c----cccccEEEEccCC-CCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE--G----KFRSACGFMYQHD-LFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~--~----~~~~~ig~v~Q~~-~~~~~lT 76 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++. . .+++.||||||++ ..++.+|
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t 101 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence 4899999999999999999999999999999999994 899999999984 1 2567899999986 3444789
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|+...... ...+..+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++||||||
T Consensus 102 v~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LSgGqkQRv~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 102 VYQDVSFGAVNMKL---PEDEIRKRVDNALKRTGIEHLKDKPT--------HCLSFGQKKRVAIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp HHHHHHHHHHTSCC---CHHHHHHHHHHHHHHTTCGGGTTSBG--------GGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchhhcCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 99999998765322 23344567889999999999999884 45999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+|||+.++..++++|++++++.|+|||++||++. ++..+|||+++|++|++++.|++++++.
T Consensus 171 ts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred cccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999995344899999999985 6888999999999999999999998753
No 6
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.1e-53 Score=396.03 Aligned_cols=201 Identities=23% Similarity=0.376 Sum_probs=180.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.+|||||+..+|+.+||+||+
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 108 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV 108 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHH
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999994 8999999999854 3467899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+.. ...+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 109 ~~~l~~~~~---~~~~~~~~v~~~l~~~gL~~~~~r~--------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 177 (355)
T 1z47_A 109 SFGLREKRV---PKDEMDARVRELLRFMRLESYANRF--------PHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177 (355)
T ss_dssp HHHHHHTTC---CHHHHHHHHHHHHHHTTCGGGTTSC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSS
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHcCChhHhcCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 998765321 2233456788999999999999998 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+..+.++++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|++++++
T Consensus 178 ~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 178 TQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999655589999999997 5788999999999999999999999875
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.5e-53 Score=380.63 Aligned_cols=200 Identities=26% Similarity=0.370 Sum_probs=175.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----------------cccccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----------------KFRSACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----------------~~~~~ig~v~ 66 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.+||||
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 99 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF 99 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEEC
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcceEEEe
Confidence 4799999999999999999999999999999999994 8999999998751 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHH-HhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHH
Q psy2520 67 QHDLFSPSLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATEL 144 (290)
Q Consensus 67 Q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL 144 (290)
|++.+++.+||+||+.++. ..... ......+++.++++.++|.+. .++++ .+|||||||||+|||||
T Consensus 100 Q~~~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~~LSgGq~qRv~lAraL 168 (262)
T 1b0u_A 100 QHFNLWSHMTVLENVMEAPIQVLGL---SKHDARERALKYLAKVGIDERAQGKYP--------VHLSGGQQQRVSIARAL 168 (262)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHTTCCHHHHTSCG--------GGSCHHHHHHHHHHHHH
T ss_pred cCcccCCCCcHHHHHHhhHHHhcCC---CHHHHHHHHHHHHHHcCCCchhhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 9999999999999999864 33211 122334567899999999988 88884 45999999999999999
Q ss_pred HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 145 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 145 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.+|++|||||||+|||+.++..++++|++++++ |+|||++|||+ .++..+||++++|++|++++.|++++++
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999554 89999999997 5788899999999999999999998764
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=7.1e-53 Score=379.44 Aligned_cols=200 Identities=25% Similarity=0.390 Sum_probs=176.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC--c----cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE--G----KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~--~----~~~~~ig~v~Q~~~~~~~lTv 77 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++. . .+++.+|||||++.+++.+||
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 117 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTV 117 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCH
Confidence 4799999999999999999999999999999999994 899999999984 1 245679999999999999999
Q ss_pred HHHHHHHH-HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 78 YEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 78 ~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+||+.|+. ..... ......+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++||||||
T Consensus 118 ~e~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LSgGqkQRv~lAraL~~~p~lllLDEP 186 (263)
T 2olj_A 118 LNNITLAPMKVRKW---PREKAEAKAMELLDKVGLKDKAHAYP--------DSLSGGQAQRVAIARALAMEPKIMLFDEP 186 (263)
T ss_dssp HHHHHHHHHHTSCC---CHHHHHHHHHHHHHHTTCGGGTTSCG--------GGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHCCCchHhcCCh--------hhCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 99999864 33221 12233456789999999998888884 45999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..++++|++++++ |+|||++|||+ .++..+||++++|++|++++.|++++++
T Consensus 187 ts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 187 TSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999554 99999999997 5788899999999999999999998764
No 9
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.3e-53 Score=395.06 Aligned_cols=202 Identities=24% Similarity=0.365 Sum_probs=180.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.+|||||+..+|+.+||+||+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 96 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNI 96 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHH
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHH
Confidence 4899999999999999999999999999999999994 8999999999854 2456899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+.. ...+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 97 ~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~~~r~--------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 165 (362)
T 2it1_A 97 AFPLELRKA---PREEIDKKVREVAKMLHIDKLLNRY--------PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165 (362)
T ss_dssp HHHHHHTTC---CHHHHHHHHHHHHHHTTCTTCTTCC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSC
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHcCCchHhhCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 998754321 2233456688999999999999998 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+..+.++++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|++++++.
T Consensus 166 ~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 166 ALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999655589999999997 57889999999999999999999998753
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.7e-53 Score=395.52 Aligned_cols=202 Identities=23% Similarity=0.345 Sum_probs=179.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.+|||||++.+|+.+||+||+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 96 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENI 96 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHH
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 4899999999999999999999999999999999994 8999999999854 2457899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 97 ~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~--------~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD 165 (359)
T 2yyz_A 97 AFPLRARR---ISKDEVEKRVVEIARKLLIDNLLDRK--------PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165 (359)
T ss_dssp HGGGSSSC---SHHHHTTHHHHHHHHHTTCGGGTTSC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 99754332 12233345688999999999999998 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+..+..+++.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|++++++.
T Consensus 166 ~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 166 ANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999655589999999997 57889999999999999999999998753
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.5e-52 Score=394.13 Aligned_cols=202 Identities=23% Similarity=0.358 Sum_probs=180.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.||||||+..+|+.+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 96 (372)
T 1g29_1 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM 96 (372)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTS
T ss_pred eeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCC
Confidence 4899999999999999999999999999999999994 8999999998743 2356799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.|+...+.. ...+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||
T Consensus 97 tv~eni~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~~~r~--------~~~LSGGq~QRvalArAL~~~P~lLLLDE 165 (372)
T 1g29_1 97 TVYDNIAFPLKLRKV---PRQEIDQRVREVAELLGLTELLNRK--------PRELSGGQRQRVALGRAIVRKPQVFLMDE 165 (372)
T ss_dssp CHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHTCGGGTTCC--------GGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHCCCchHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 999999998765321 2233446688999999999999998 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||++||+..+.++++.|+++.++.|.|+|+||||+ .++..+||++++|++|+++..|++++++.
T Consensus 166 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 166 PLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999655589999999997 57889999999999999999999998753
No 12
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.9e-53 Score=380.19 Aligned_cols=199 Identities=28% Similarity=0.399 Sum_probs=176.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. .+++.++|++|++.+++.+||+|
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE 104 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence 4799999999999999999999999999999999994 8999999999864 24567999999998888899999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh------CCCeEEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT------DPALLLC 153 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~------~p~llll 153 (290)
|+.++...... ....+++.++++.+++.+..++.+ .+|||||||||+|||||+. +|++|||
T Consensus 105 ~l~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~QRv~iAraL~~~~~~~~~p~lLll 171 (266)
T 4g1u_C 105 VIQMGRAPYGG-----SQDRQALQQVMAQTDCLALAQRDY--------RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFL 171 (266)
T ss_dssp HHHGGGTTSCS-----TTHHHHHHHHHHHTTCSTTTTSBG--------GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEE
T ss_pred HHHhhhhhcCc-----HHHHHHHHHHHHHcCChhHhcCCc--------ccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence 99987543211 112345788999999999988884 4599999999999999999 9999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||+|||+.++..++++|++++++.|+|||++|||+ .++..+|||+++|++|++++.|++++++
T Consensus 172 DEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 172 DEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred eCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999665578999999997 5788899999999999999999999764
No 13
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.3e-53 Score=394.78 Aligned_cols=201 Identities=22% Similarity=0.340 Sum_probs=179.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.+|||||++.+|+.+|
T Consensus 22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~lt 98 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLT 98 (353)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSC
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCC
Confidence 3899999999999999999999999999999999994 8999999998743 24678999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|+...+. ....+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++||||||
T Consensus 99 v~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~--------~~~LSGGq~QRvalAraL~~~P~lLLLDEP 167 (353)
T 1oxx_K 99 AFENIAFPLTNMK---MSKEEIRKRVEEVAKILDIHHVLNHF--------PRELSGAQQQRVALARALVKDPSLLLLDEP 167 (353)
T ss_dssp HHHHHHGGGTTSS---CCHHHHHHHHHHHHHHTTCGGGTTSC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCC--------hhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 9999999764432 12233456788999999999999998 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|++||+..+.++++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|++++++
T Consensus 168 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 168 FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp TTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999655589999999997 5788999999999999999999999875
No 14
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=9.7e-53 Score=392.05 Aligned_cols=198 Identities=28% Similarity=0.398 Sum_probs=178.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.+|||||++.+|+.+||+||+
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl 93 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNL 93 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999994 8999999999854 2456899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+.... . +++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 94 ~~~~~~~~~~~---~---~~v~~~l~~~~L~~~~~~~--------~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD 159 (348)
T 3d31_A 94 EFGMRMKKIKD---P---KRVLDTARDLKIEHLLDRN--------PLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159 (348)
T ss_dssp HHHHHHHCCCC---H---HHHHHHHHHTTCTTTTTSC--------GGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred HHHHHHcCCCH---H---HHHHHHHHHcCCchHhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 99865432111 1 4578899999999999998 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|++++++
T Consensus 160 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 160 PRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999666699999999997 5788999999999999999999999765
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-52 Score=374.93 Aligned_cols=201 Identities=23% Similarity=0.327 Sum_probs=176.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.+||+||++.+++.+||+||
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 108 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEY 108 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHH
Confidence 4799999999999999999999999999999999994 8999999999853 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.++...... ......+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++|||||||+||
T Consensus 109 l~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGq~qRv~lAraL~~~p~lllLDEPts~L 177 (256)
T 1vpl_A 109 LRFVAGFYAS---SSSEIEEMVERATEIAGLGEKIKDRV--------STYSKGMVRKLLIARALMVNPRLAILDEPTSGL 177 (256)
T ss_dssp HHHHHHHHCC---CHHHHHHHHHHHHHHHCCGGGGGSBG--------GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTC
T ss_pred HHHHHHHcCC---ChHHHHHHHHHHHHHCCCchHhcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccc
Confidence 9987543221 12223356788999999998888884 459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..++++|++++ +.|+|||++||++ .++..+||++++|++|++++.|+++++..
T Consensus 178 D~~~~~~l~~~l~~l~-~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 178 DVLNAREVRKILKQAS-QEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp CHHHHHHHHHHHHHHH-HTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999995 4589999999997 57788999999999999999999987653
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.4e-52 Score=367.61 Aligned_cols=194 Identities=27% Similarity=0.401 Sum_probs=170.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------ccc-ccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFR-SACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~-~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .++ +.+|||||++.+++.+
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL 97 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCC
Confidence 4799999999999999999999999999999999994 8999999999853 122 6799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.++...... ......+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++|||||
T Consensus 98 tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~laral~~~p~lllLDE 166 (224)
T 2pcj_A 98 TALENVIVPMLKMGK---PKKEAKERGEYLLSELGLGDKLSRKP--------YELSGGEQQRVAIARALANEPILLFADE 166 (224)
T ss_dssp CHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHTTCTTCTTCCG--------GGSCHHHHHHHHHHHHTTTCCSEEEEES
T ss_pred CHHHHHHhHHHHcCC---CHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999999987654321 12233456789999999999888884 4599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
||+|||+.++..+++.|++++++ |+|||++|||+ ..+ .+||++++|++|++++.|+
T Consensus 167 Pt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 167 PTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999555 89999999996 455 8999999999999999885
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1e-52 Score=394.90 Aligned_cols=202 Identities=23% Similarity=0.317 Sum_probs=173.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.||||||+..+|+.+||+||+
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 104 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENI 104 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHH
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999994 8999999999854 2456899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 105 ~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~--------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 173 (372)
T 1v43_A 105 AFPLKIKK---FPKDEIDKRVRWAAELLQIEELLNRY--------PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173 (372)
T ss_dssp HTTCC--C---CCHHHHHHHHHHHHHHTTCGGGTTSC--------TTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHcCChhHhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 99753322 12333456688999999999999998 56699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+..+.++++.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|++++++.
T Consensus 174 ~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 174 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999655589999999997 57889999999999999999999998753
No 18
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-52 Score=372.35 Aligned_cols=198 Identities=25% Similarity=0.374 Sum_probs=174.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++ |+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.+||+||++.+++.+||+||+
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHH
Confidence 479999999 999999999999999999999999994 8999999999853 3467899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. .. ...+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++|||||||+|||
T Consensus 92 ~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD 158 (240)
T 2onk_A 92 AYGLRNVE---RV--ERDRRVREMAEKLGIAHLLDRKP--------ARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158 (240)
T ss_dssp HTTCTTSC---HH--HHHHHHHHHHHTTTCTTTTTCCG--------GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred HHHHHHcC---Cc--hHHHHHHHHHHHcCCHHHhcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 98643221 11 12456788999999998888884 4599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+++.|++++++.|+|||++||++ .++..+||++++|++|+++..|++++++
T Consensus 159 ~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 159 LKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999554589999999997 5788999999999999999999998764
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-52 Score=370.81 Aligned_cols=199 Identities=24% Similarity=0.345 Sum_probs=172.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. . .++.+||+||++.+++.+||+
T Consensus 23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 99 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVY 99 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHH
Confidence 4799999999999999999999999999999999994 8999999999853 1 245699999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELG-LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.++...... .....+.+.++++.++ +.+..+++ +.+|||||||||+|||||+.+|++|||||||
T Consensus 100 enl~~~~~~~~~----~~~~~~~~~~~l~~~~~l~~~~~~~--------~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 167 (240)
T 1ji0_A 100 ENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQL--------GGTLSGGEQQMLAIGRALMSRPKLLMMDEPS 167 (240)
T ss_dssp HHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSB--------SSSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred HHHHHhhhcCCC----HHHHHHHHHHHHHHcccHhhHhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 999986421111 1122345678899994 88888888 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+++.|+++++ .|+|||++||++ .++..+||++++|++|++++.|++++++
T Consensus 168 s~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 168 LGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999954 589999999997 4788999999999999999999988764
No 20
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2e-52 Score=375.31 Aligned_cols=201 Identities=21% Similarity=0.290 Sum_probs=174.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. .+++.+|||||++.+++.+||+
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 100 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVL 100 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHH
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHH
Confidence 4799999999999999999999999999999999994 8999999999853 1356799999999999999999
Q ss_pred HHHHHHHHh-cCch---------hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 79 EHLYFMALL-KLDR---------RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 79 e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
||+.++... .... ........+++.++++.+||.+..++++ .+|||||||||+|||||+.+|
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGqkQrv~iAraL~~~p 172 (257)
T 1g6h_A 101 ENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA--------GELSGGQMKLVEIGRALMTNP 172 (257)
T ss_dssp HHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG--------GGSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc--------hhCCHHHHHHHHHHHHHHcCC
Confidence 999986432 1110 0111223456789999999998888884 459999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
++|||||||+|||+.++..++++|+++++ .|+|||++||++. ++..+||++++|++|++++.|++++
T Consensus 173 ~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 173 KMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999954 4899999999984 6788999999999999999999887
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-51 Score=369.09 Aligned_cols=200 Identities=24% Similarity=0.406 Sum_probs=173.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCC-CCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHD-LFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~-~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.+|||||++ .+++.+||+||+
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl 100 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEV 100 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHH
Confidence 4799999999999999999999999999999999994 8999999998754 3567899999995 566779999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCC--CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLM--NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
.|+.... ... ....+++.++++.+||. +..++++ .+|||||||||+|||||+.+|++|||||||+|
T Consensus 101 ~~~~~~~-~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~--------~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 101 AFAVKNF-YPD---RDPVPLVKKAMEFVGLDFDSFKDRVP--------FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHTTTTT-CTT---SCSHHHHHHHHHHTTCCHHHHTTCCG--------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHhc-CCH---HHHHHHHHHHHHHcCcCCcccccCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 9864322 111 11124567899999998 8888884 45999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+.++..+++.|++++++ |.|||++||++. ++..+||++++|++|++++.|++++++.
T Consensus 169 LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTL-GKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999555 899999999984 6778999999999999999999987653
No 22
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5e-51 Score=368.96 Aligned_cols=202 Identities=22% Similarity=0.295 Sum_probs=168.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. .+++.||||||++.+++ .||+|
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 111 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRE 111 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHH
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHH
Confidence 4799999999999999999999999999999999994 8999999999853 24567999999998887 59999
Q ss_pred HHHHHHHhcCc-hhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 80 HLYFMALLKLD-RRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 80 ~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+.|+...... ...........+.++++.+ |+....+++ +.+|||||||||+|||||+.+|++||||||
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~--------~~~LSgGq~QRv~lAraL~~~p~lllLDEP 183 (271)
T 2ixe_A 112 NIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET--------GNQLSGGQRQAVALARALIRKPRLLILDNA 183 (271)
T ss_dssp HHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG--------GTTSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC--------cCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99986422111 1111111223356778887 777777777 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++.|++++++.|+|||++||++ ..+ ..||++++|++|+++..|++++++
T Consensus 184 ts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~-~~~d~v~~l~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLA-ERAHHILFLKEGSVCEQGTHLQLM 244 (271)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHH-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999998544589999999997 355 469999999999999999998765
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.5e-50 Score=361.69 Aligned_cols=194 Identities=26% Similarity=0.382 Sum_probs=171.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+|||||||||||++|+|+++| + |+|.++|+++.. .+++.+||+||++.+++.+||+|
T Consensus 17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHH
Confidence 479999999999999999999999999999999998 6 999999999753 24567999999998899999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC-------eEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA-------LLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~-------lll 152 (290)
|+.++.. .. .. .+++.++++.++|.+..++++ .+|||||||||+|||||+.+|+ +||
T Consensus 93 ~l~~~~~-~~---~~----~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll 156 (249)
T 2qi9_C 93 YLTLHQH-DK---TR----TELLNDVAGALALDDKLGRST--------NQLSGGEWQRVRLAAVVLQITPQANPAGQLLL 156 (249)
T ss_dssp HHHTTCS-ST---TC----HHHHHHHHHHTTCGGGTTSBG--------GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred HHHHhhc-cC---Cc----HHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE
Confidence 9987521 11 11 345678999999998888884 4599999999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+++.|++++++ |+|||++|||+ .++..+||++++|++|++++.|++++++
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 157 LDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp ESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999544 89999999997 4778899999999999999999988653
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=9.5e-51 Score=363.02 Aligned_cols=199 Identities=23% Similarity=0.239 Sum_probs=164.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcC--CCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~--~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++.. . .+..++|+||++.+++.+|
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (250)
T 2d2e_A 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVT 96 (250)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCB
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCC
Confidence 479999999999999999999999999999998 677 48999999999853 1 2346999999999999999
Q ss_pred HHHHHHHHHHh-cCchhhhHHHHHHHHHHHHHHcCC-CCccCcccCCcCCCCCCC-CChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 77 VYEHLYFMALL-KLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVV-LSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 77 v~e~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~v~~~~~~~~~~-LSgGqrqRv~ia~aL~~~p~llll 153 (290)
|+||+.++... ... ........+++.++++.+++ .+..+++ +.+ |||||||||+|||||+.+|++|||
T Consensus 97 v~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~~~LSgGqkQrv~iAraL~~~p~lllL 167 (250)
T 2d2e_A 97 IANFLRLALQAKLGR-EVGVAEFWTKVKKALELLDWDESYLSRY--------LNEGFSGGEKKRNEILQLLVLEPTYAVL 167 (250)
T ss_dssp HHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHTCCGGGGGSB--------TTCC----HHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHhhccc-cCCHHHHHHHHHHHHHHcCCChhHhcCC--------cccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999986532 110 01112234567889999999 4777877 666 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCeEEEEcCHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~i~~~g~~~ 216 (290)
||||+|||+.++..++++|+++ ++.|+|||++||++. ++..+ ||++++|++|++++.|+++
T Consensus 168 DEPts~LD~~~~~~l~~~l~~l-~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 168 DETDSGLDIDALKVVARGVNAM-RGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp ECGGGTTCHHHHHHHHHHHHHH-CSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred eCCCcCCCHHHHHHHHHHHHHH-HhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999 446899999999974 66667 5999999999999999987
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.3e-50 Score=367.70 Aligned_cols=203 Identities=26% Similarity=0.349 Sum_probs=170.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC--c----cccccEEEEccCCCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE--G----KFRSACGFMYQHDLF--SPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~--~----~~~~~ig~v~Q~~~~--~~~l 75 (290)
.||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. . .+++.||||||++.+ .+.+
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~l 114 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE 114 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTS
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCC
Confidence 4799999999999999999999999999999999994 899999999875 2 346789999998643 3457
Q ss_pred CHHHHHHHHHHhc-CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 76 TVYEHLYFMALLK-LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 76 Tv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
||+||+.++.... ...........+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++||||
T Consensus 115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGqkqRv~lAraL~~~p~lLlLD 186 (279)
T 2ihy_A 115 RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI--------GYLSTGEKQRVMIARALMGQPQVLILD 186 (279)
T ss_dssp BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG--------GGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 9999998853210 0000011223456788999999998888884 459999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEE--EEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTV--LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~ti--i~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+|||+.++..++++|++++++ |+|| |++|||+. ++..+||++++|++|++++.|++++++
T Consensus 187 EPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 187 EPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred CCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999555 8999 99999974 677899999999999999999988653
No 26
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.8e-50 Score=368.00 Aligned_cols=196 Identities=24% Similarity=0.418 Sum_probs=162.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.||||||++.+|+ .||+|
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~e 146 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIAD 146 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHH
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHH
Confidence 4799999999999999999999999999999999994 8999999999864 36788999999998885 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-------ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.|+...... +.+.++++.+++.+ ..++.+++. ..+|||||||||+|||||+.+|+|||
T Consensus 147 Ni~~~~~~~~~---------~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~----g~~LSGGqrQRvaiARAL~~~p~iLl 213 (306)
T 3nh6_A 147 NIRYGRVTAGN---------DEVEAAAQAAGIHDAIMAFPEGYRTQVGER----GLKLSGGEKQRVAIARTILKAPGIIL 213 (306)
T ss_dssp HHHTTSTTCCH---------HHHHHHHHHHTCHHHHHHSTTGGGCEESTT----SBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHhhcccCCH---------HHHHHHHHHhCcHHHHHhccchhhhHhcCC----cCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99986432211 11223333333322 234444442 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.+...+++.|+++. + ++|+|+|||++. .+. .||+|++|++|+++..|++++++.
T Consensus 214 LDEPts~LD~~~~~~i~~~l~~l~-~-~~Tvi~itH~l~-~~~-~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 214 LDEATSALDTSNERAIQASLAKVC-A-NRTTIVVAHRLS-TVV-NADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHH-T-TSEEEEECCSHH-HHH-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEEcChH-HHH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999984 3 689999999974 555 599999999999999999998764
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.7e-49 Score=355.55 Aligned_cols=194 Identities=24% Similarity=0.329 Sum_probs=166.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|. +++.+||+||++.+++.+||+||+.+
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~---------~~~~i~~v~q~~~~~~~~tv~enl~~ 89 (253)
T 2nq2_C 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIE---------VYQSIGFVPQFFSSPFAYSVLDIVLM 89 (253)
T ss_dssp EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEE---------ECSCEEEECSCCCCSSCCBHHHHHHG
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEE---------EeccEEEEcCCCccCCCCCHHHHHHH
Confidence 4799999999999999999999999999999999994 89998 24679999999988889999999998
Q ss_pred HHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+...... .........+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~ 161 (253)
T 2nq2_C 90 GRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF--------TSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161 (253)
T ss_dssp GGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG--------GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCH
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 6432110 00001122355788999999998888884 45999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.++..+++.|++++++.|+|||++|||+ .++..+||++++|++|+ ++.|++++++
T Consensus 162 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 9999999999999554589999999997 57888999999999999 9999988653
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2e-49 Score=357.79 Aligned_cols=209 Identities=23% Similarity=0.249 Sum_probs=172.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCCccEEEECCEecCc----cc-cccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG----KF-RSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~~~~G~I~i~G~~~~~----~~-~~~ig~v~Q~~~~~~~lT 76 (290)
.||||++++||+++|+||||||||||||+|+|+. +| ++|+|.++|+++.. .. ++.++|+||++.+++.+|
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~t 113 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVS 113 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCB
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccccc
Confidence 4799999999999999999999999999999994 46 48999999999853 12 345999999999999999
Q ss_pred HHHHHHHHHH-hc---CchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCC-CCChHHHHHHHHHHHHHhCCCe
Q psy2520 77 VYEHLYFMAL-LK---LDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKV-VLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 77 v~e~l~~~~~-~~---~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~-~LSgGqrqRv~ia~aL~~~p~l 150 (290)
|.||+.+... .. ...........+++.++++.++|. +..+++ +. +|||||||||+|||||+.+|++
T Consensus 114 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~~~LSgGq~QRv~iAraL~~~p~l 185 (267)
T 2zu0_C 114 NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS--------VNVGFSGGEKKRNDILQMAVLEPEL 185 (267)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB--------TTTTCCHHHHHHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC--------cccCCCHHHHHHHHHHHHHHhCCCE
Confidence 9999987542 11 100111222345678999999996 567777 44 3999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCeEEEEcCHHHHHHHHHHCC
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTAFIGSKDAALAFLESQG 226 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~~~~~g 226 (290)
|||||||+|||+.++..++++|+++ ++.|+|||++|||+. ++..+ ||++++|++|++++.|+++++.. +...+
T Consensus 186 LlLDEPts~LD~~~~~~l~~~l~~l-~~~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~ 259 (267)
T 2zu0_C 186 CILDESDSGLDIDALKVVADGVNSL-RDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQG 259 (267)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHTT-CCSSCEEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcc
Confidence 9999999999999999999999998 455899999999974 56665 89999999999999999987653 34433
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.6e-50 Score=356.64 Aligned_cols=195 Identities=23% Similarity=0.379 Sum_probs=162.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.||||||++.+++ .||+|
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 101 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIID 101 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHH
Confidence 4799999999999999999999999999999999994 8999999999853 25678999999988886 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcc-------cCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR-------IGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.|+.. . .. .+.+.++++.+++.+..++. ++. .+.+|||||||||+|||||+.+|++||
T Consensus 102 nl~~~~~--~---~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~----~~~~LSgGq~qRv~iAraL~~~p~lll 168 (247)
T 2ff7_A 102 NISLANP--G---MS----VEKVIYAAKLAGAHDFISELREGYNTIVGE----QGAGLSGGQRQRIAIARALVNNPKILI 168 (247)
T ss_dssp HHTTTCT--T---CC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST----TTTCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHhccCC--C---CC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC----CCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9987521 1 11 12345566667765443332 111 145699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+++.|+++ ++ |+|||++||++. .+ ..||++++|++|++++.|++++++
T Consensus 169 LDEPts~LD~~~~~~i~~~l~~~-~~-g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 169 FDEATSALDYESEHVIMRNMHKI-CK-GRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp ECCCCSCCCHHHHHHHHHHHHHH-HT-TSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHH-cC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999 44 899999999974 45 569999999999999999998764
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-49 Score=351.92 Aligned_cols=200 Identities=26% Similarity=0.351 Sum_probs=166.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.+|||||++.+++ .||+|
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e 94 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRE 94 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHH
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHH
Confidence 4799999999999999999999999999999999994 8999999999853 35678999999998887 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccC---CcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG---SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~---~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+.|+.... .. .+.+.++++.+++.+..++.+. ......+.+|||||||||+|||||+.+|++||||||
T Consensus 95 nl~~~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEP 166 (243)
T 1mv5_A 95 NLTYGLEGD----YT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166 (243)
T ss_dssp HTTSCTTSC----SC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred HHhhhccCC----CC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 998752111 11 1235678888998776654321 000001456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++.|++++ + |+|||++||++ ..+ ..||++++|++|+++..|++++++
T Consensus 167 ts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 167 TASLDSESESMVQKALDSLM-K-GRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp SCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999994 4 89999999997 345 569999999999999999998765
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-49 Score=343.91 Aligned_cols=185 Identities=23% Similarity=0.322 Sum_probs=159.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++. .+++.++|+||++.+++.+||+||+.+
T Consensus 26 ~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~-~~~~~i~~v~q~~~~~~~~tv~enl~~ 101 (214)
T 1sgw_A 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVEDYLKA 101 (214)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG-GGGGGEEEECSSCCCCTTSBHHHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh-hhcCcEEEEeCCCcCCCCCCHHHHHHH
Confidence 4799999999999999999999999999999999994 899999999886 457789999999999999999999998
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+...... ... .+++.++++.+++.+. +++ +.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 102 ~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~--------~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~ 167 (214)
T 1sgw_A 102 VASLYGV-KVN----KNEIMDALESVEVLDL-KKK--------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 167 (214)
T ss_dssp HHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSB--------GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred HHHhcCC-chH----HHHHHHHHHHcCCCcC-CCC--------hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH
Confidence 7543321 111 2456789999999887 777 4459999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
++..+++.|+++++ .|+|||++||++. ++..+||+++++ .|+|
T Consensus 168 ~~~~l~~~l~~~~~-~g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 168 SKHKVLKSILEILK-EKGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp THHHHHHHHHHHHH-HHSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 99999999999954 4899999999985 678889998865 4554
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.2e-48 Score=347.25 Aligned_cols=194 Identities=28% Similarity=0.411 Sum_probs=160.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++|++++|+|||||||||||++|+|+++| +|+|.++|+++.. .+++.||||||++.+++ .||+|
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 111 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKY 111 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHH
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHH
Confidence 479999999999999999999999999999999876 6999999999853 25678999999998886 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-------ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.|+.. . ... +.+.++++.+++.+ ..++.++.. +.+|||||||||+|||||+.+|++||
T Consensus 112 nl~~~~~-~----~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~----~~~LSgGqkqRv~lAraL~~~p~lll 178 (260)
T 2ghi_A 112 NILYGKL-D----ATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNK----GMKLSGGERQRIAIARCLLKDPKIVI 178 (260)
T ss_dssp HHHTTCT-T----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSS----SBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHhccCC-C----CCH----HHHHHHHHHhCCHHHHHhccccccccccCC----cCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9987521 1 111 22345566666533 223222221 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+++.|+++ ++ |+|||++||++. .+ ..||++++|++|+++..|++++++
T Consensus 179 LDEPts~LD~~~~~~i~~~l~~l-~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 179 FDEATSSLDSKTEYLFQKAVEDL-RK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHH-TT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHh-cC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999 44 799999999974 44 569999999999999999998765
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5e-48 Score=347.84 Aligned_cols=189 Identities=24% Similarity=0.259 Sum_probs=165.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEE-EEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACG-FMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig-~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||+++ |++++|+|||||||||||++|+|++ |+ +|+|.++|+++.. ..++.++ |+||++.+ .+||+||+
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl 94 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIV 94 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHH
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHH
Confidence 47999999 9999999999999999999999999 84 8999999998753 1256799 99999876 88999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.++..... . ..+++.++++.++|. +..++++ .+|||||||||+|||||+.+|++|||||||+||
T Consensus 95 ~~~~~~~~---~----~~~~~~~~l~~~gl~~~~~~~~~--------~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 95 YLYEELKG---L----DRDLFLEMLKALKLGEEILRRKL--------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHTC---C----CHHHHHHHHHHTTCCGGGGGSBG--------GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHhhhhcc---h----HHHHHHHHHHHcCCChhHhcCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 98754321 1 123467899999998 8888884 459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcC-eEEEEeCCeEEEEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD-KIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d-~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+.++..+++.|+++ .+ |||++||++ .++.++|| ++++|++|++++.|++++++
T Consensus 160 D~~~~~~l~~~L~~~-~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 160 DAARRHVISRYIKEY-GK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp CHHHHHHHHHHHHHS-CS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred CHHHHHHHHHHHHHh-cC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999999999999988 33 999999997 46778999 99999999999999998765
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-48 Score=364.63 Aligned_cols=198 Identities=23% Similarity=0.294 Sum_probs=165.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||+++|+|||||||||||++|+|+++ + +|+|+++|+++.. .+++.+|||||++.+|+ +||+|
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~e 112 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRK 112 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHH
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHH
Confidence 58999999999999999999999999999999986 3 7999999999864 25678999999999887 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCC---cCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS---SSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~---~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+.+.. . .. .+++.++++.++|.+..++.+.. ........|||||||||+|||||+.+|++||||||
T Consensus 113 nl~~~~--~----~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEP 182 (390)
T 3gd7_A 113 NLDPNA--A----HS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP 182 (390)
T ss_dssp HHCTTC--C----SC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESH
T ss_pred Hhhhcc--c----cC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 996421 1 11 23467889999998877777221 00000123999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|++||+..+.++++.|+++ . .++|+|++||++. ....||||++|++|+++..|++++++.
T Consensus 183 ts~LD~~~~~~l~~~l~~~-~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 183 SAHLDPVTYQIIRRTLKQA-F-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHHSCHHHHHHHHHHHHTT-T-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHH-h-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999986 3 4799999999963 456799999999999999999998764
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.3e-46 Score=332.03 Aligned_cols=185 Identities=26% Similarity=0.421 Sum_probs=149.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||++++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++|+||++.+++. ||+||+.|
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g---------~i~~v~q~~~~~~~-tv~enl~~ 91 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG---------RISFCSQFSWIMPG-TIKENIIF 91 (229)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS---------CEEEECSSCCCCSB-CHHHHHHT
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC---------EEEEEecCCcccCC-CHHHHhhc
Confidence 4799999999999999999999999999999999994 89999998 39999999988885 99999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCcc-------CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQ-------HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+... .. . .+.++++.+++.+.. ++.++.. +.+|||||||||+|||||+.+|++||||||
T Consensus 92 ~~~~---~~---~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 92 GVSY---DE---Y----RYRSVIKACQLEEDISKFAEKDNIVLGEG----GITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp TSCC---CH---H----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT----CTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred cCCc---Ch---H----HHHHHHHHhCcHHHHHhCcccccccccCC----CCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 5311 10 0 112233333432221 2222221 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~-l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++. ++++ .+ |+|||++||++ ..+ ..||++++|++|++++.|+++++.
T Consensus 158 ts~LD~~~~~~i~~~l~~~~-~~-~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 158 FGYLDVLTEKEIFESCVCKL-MA-NKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp TTTSCHHHHHHHHHHCCCCC-TT-TSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHh-hC-CCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999997 4565 33 78999999997 355 469999999999999999998764
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.4e-46 Score=333.59 Aligned_cols=187 Identities=25% Similarity=0.428 Sum_probs=150.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++| .+|||||++.+ +.+||+||+.+
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g---------~i~~v~Q~~~~-~~~tv~enl~~ 88 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG---------SVAYVPQQAWI-QNDSLRENILF 88 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS---------CEEEECSSCCC-CSEEHHHHHHT
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC---------EEEEEcCCCcC-CCcCHHHHhhC
Confidence 4799999999999999999999999999999999984 89999998 39999999764 57899999988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCC-----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMN-----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
+.... . ..........++++.+++.. ..+++ +.+|||||||||+|||||+.+|++|||||||+
T Consensus 89 ~~~~~--~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 89 GCQLE--E--PYYRSVIQACALLPDLEILPSGDRTEIGEK--------GVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp TSCCC--T--THHHHHHHHTTCHHHHTTSTTGGGSEESTT--------SBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred ccccC--H--HHHHHHHHHHhhHHHHHhccccccccccCC--------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 53211 1 11111111112233344321 13344 45699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH---HHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMR---ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~---~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+++.|. ++ . .|+|||++||++. .+ ..||++++|++|+++..|++++++
T Consensus 157 ~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 157 AVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp TSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 999999999999995 44 3 4899999999985 44 579999999999999999998765
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.5e-46 Score=368.69 Aligned_cols=203 Identities=23% Similarity=0.386 Sum_probs=162.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .++++++||||++.+|+. ||+|
T Consensus 360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~e 435 (587)
T 3qf4_A 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKE 435 (587)
T ss_dssp EEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHH
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHH
Confidence 5899999999999999999999999999999999994 8999999999864 367889999999988865 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.++.............+...+.+.++ .+.+..++.+++. +.+||||||||++|||||+.+|++|||||||++
T Consensus 436 ni~~~~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~~~~~----~~~LSgGqrQrv~lARal~~~p~illlDEpts~ 509 (587)
T 3qf4_A 436 NLKWGREDATDDEIVEAAKIAQIHDFII--SLPEGYDSRVERG----GRNFSGGQKQRLSIARALVKKPKVLILDDCTSS 509 (587)
T ss_dssp HHTTTCSSCCHHHHHHHHHHTTCHHHHH--TSSSGGGCEECSS----SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTT
T ss_pred HHhccCCCCCHHHHHHHHHHhCcHHHHH--hcccchhhHhcCC----CCCcCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 9987632111000000000111122222 2233445555553 567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+.+...+.+.|+++ . +|+|+|++||++. . ...||+|++|++|++++.|++++++.
T Consensus 510 LD~~~~~~i~~~l~~~-~-~~~tvi~itH~l~-~-~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 510 VDPITEKRILDGLKRY-T-KGCTTFIITQKIP-T-ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp SCHHHHHHHHHHHHHH-S-TTCEEEEEESCHH-H-HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-C-CCCEEEEEecChH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999998 4 4899999999973 4 46899999999999999999998764
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.9e-45 Score=363.16 Aligned_cols=196 Identities=27% Similarity=0.377 Sum_probs=165.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+|||||++.+++. ||+|
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~e 435 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIAN 435 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999853 367889999999988875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-------cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-------QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.. . ... .+++.++++.+++.+. .++.+++. ..+||||||||++|||||+.+|++||
T Consensus 436 ni~~~~~-~---~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~----~~~LSgGq~qr~~iAral~~~p~ill 503 (582)
T 3b5x_A 436 NIAYAAE-G---EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN----GTSLSGGQRQRVAIARALLRDAPVLI 503 (582)
T ss_pred HHhccCC-C---CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC----CCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9998631 1 111 1235566777766543 34444543 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.++..+.+.|+++ .+ |+|+|++||++. .+ ..||++++|++|+++..|++++++
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 504 LDEATSALDTESERAIQAALDEL-QK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHH-cC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999998 44 899999999973 44 579999999999999999999765
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.1e-45 Score=366.02 Aligned_cols=196 Identities=27% Similarity=0.394 Sum_probs=164.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+|||||++.+++. ||+|
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~e 433 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKE 433 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHH
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999864 367789999999988876 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... .. +.+.++++..++ .+..++.+++. ..+|||||||||+|||||+.+|++||
T Consensus 434 ni~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~----g~~LSgGq~Qrv~lAral~~~p~ill 500 (578)
T 4a82_A 434 NILLGRPTA-----TD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER----GVKLSGGQKQRLSIARIFLNNPPILI 500 (578)
T ss_dssp HHGGGCSSC-----CH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG----GTTSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHhcCCCCC-----CH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC----CCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 998863211 11 123334444443 33455666654 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.++..+.+.|+++ .+ ++|+|++||++. .+ ..||++++|++|++++.|++++++.
T Consensus 501 lDEpts~LD~~~~~~i~~~l~~~-~~-~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 501 LDEATSALDLESESIIQEALDVL-SK-DRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHH-TT-TSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHH-cC-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999998 43 789999999985 44 5699999999999999999998753
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.2e-45 Score=364.05 Aligned_cols=197 Identities=27% Similarity=0.389 Sum_probs=165.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+|||||++.+++. ||+|
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~e 435 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVAN 435 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHH
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHH
Confidence 4799999999999999999999999999999999994 8999999999864 357789999999988875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-------ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.. .. .. .+++.++++.+++.+ ..++.+++. ..+||||||||++|||||+++|++||
T Consensus 436 ni~~~~~-~~---~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~----~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 436 NIAYART-EE---YS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN----GVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp HHHTTTT-SC---CC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT----SCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHhccCC-CC---CC----HHHHHHHHHHcCCHHHHHhccccccccccCC----CCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9998631 11 11 123456666666643 334455543 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.++..+.+.|+++ .+ |+|+|++||++. .+ +.||++++|++|+++..|++++++.
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDEL-QK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHHH-HT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHH-hC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999998 44 899999999974 44 5799999999999999999997753
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.8e-45 Score=364.14 Aligned_cols=198 Identities=26% Similarity=0.386 Sum_probs=165.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+|||||++.+++ .||+|
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 436 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAE 436 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHHH
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-CCHHH
Confidence 4799999999999999999999999999999999994 8999999999864 35678999999998887 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... .... .+++.++++.+++. +..++.+++. ..+|||||||||+|||||+++|++||
T Consensus 437 ni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~----~~~LSgGq~qrv~iAral~~~p~ill 506 (595)
T 2yl4_A 437 NIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEK----GVLLSGGQKQRIAIARALLKNPKILL 506 (595)
T ss_dssp HHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS----SCCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCC----CCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999864211 0011 13356677777764 3356666653 46799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.++..+.+.|+++ .+ |+|+|++||++. .+ ..||++++|++|+++..|++++++
T Consensus 507 lDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 507 LDEATSALDAENEYLVQEALDRL-MD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp EECCCSSCCHHHHHHHHHHHHHH-HT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC--
T ss_pred EECcccCCCHHHHHHHHHHHHHH-hc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999998 44 789999999973 44 569999999999999999998764
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-45 Score=364.55 Aligned_cols=196 Identities=26% Similarity=0.343 Sum_probs=162.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+|+.+|||||++.+|+ .||+|
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~e 447 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKE 447 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHH
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHH
Confidence 5899999999999999999999999999999999994 8999999999864 36788999999998886 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++...... +.+.++++..++ .+..++.+++. ..+||||||||++|||||+.+|++||
T Consensus 448 ni~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~----g~~LSgGq~Qrv~iAral~~~p~ill 514 (598)
T 3qf4_B 448 NLKYGNPGATD---------EEIKEAAKLTHSDHFIKHLPEGYETVLTDN----GEDLSQGQRQLLAITRAFLANPKILI 514 (598)
T ss_dssp HHHSSSTTCCT---------THHHHHTTTTTCHHHHHTSTTGGGCBCHHH----HTTSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred HHhcCCCCCCH---------HHHHHHHHHhCCHHHHHhccccccchhcCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99875321110 112333333333 23344444443 34699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.+...+.+.|+++ .+ |+|+|++||++. .+ ..||+|++|++|+++..|++++++.
T Consensus 515 lDEpts~LD~~~~~~i~~~l~~~-~~-~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 515 LDEATSNVDTKTEKSIQAAMWKL-ME-GKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp ECCCCTTCCHHHHHHHHHHHHHH-HT-TSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHHH-cC-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999998 43 899999999985 45 5699999999999999999998753
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.4e-44 Score=329.68 Aligned_cols=184 Identities=27% Similarity=0.416 Sum_probs=147.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++| ++|+|.++| .++|+||++.+++. ||+||+.
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~enl~- 120 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------RISFCSQNSWIMPG-TIKENII- 120 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS---------CEEEECSSCCCCSS-BHHHHHH-
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC---------EEEEEeCCCccCcc-cHHHHhh-
Confidence 479999999999999999999999999999999999 489999988 39999999888875 9999997
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCcc-------CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQ-------HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+. ... . . .+.++++.+++.+.. ++.++.. +.+|||||||||+|||||+.+|++||||||
T Consensus 121 ~~--~~~-~---~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~~LSgGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 121 GV--SYD-E---Y----RYRSVIKACQLEEDISKFAEKDNIVLGEG----GITLSGGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp TT--CCC-H---H----HHHHHHHHTTCHHHHHTSTTGGGCBC--------CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred Cc--ccc-h---H----HHHHHHHHhChHHHHHhccccccchhcCc----cCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 32 111 0 0 112233444443221 1122211 356999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMM-RELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l-~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++.+ +++ . .|+|||++||++ ..+ ..||++++|++|+++..|++++++
T Consensus 187 ts~LD~~~~~~i~~~ll~~~-~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 187 FGYLDVLTEKEIFESCVCKL-M-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp TTTCCHHHHHHHHHHCCCCC-T-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHh-h-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999999974 555 3 389999999997 455 569999999999999999998775
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.7e-43 Score=373.61 Aligned_cols=198 Identities=23% Similarity=0.337 Sum_probs=170.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|+|||.+||+||||||||||+++|.|+++|. +|+|.+||.++.. .+|++|+||||++.+|+. |++|
T Consensus 1096 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIre 1171 (1321)
T 4f4c_A 1096 KGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAE 1171 (1321)
T ss_dssp EEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHH
T ss_pred cceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999975 488999999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.|+... ...+ .+++.++++..++ .+..|+.+|+.+ .+||||||||++|||||+++|+|||
T Consensus 1172 NI~~gld~---~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G----~~LSgGQrQriaiARAllr~~~ILi 1240 (1321)
T 4f4c_A 1172 NIIYGLDP---SSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRG----TQLSGGQKQRIAIARALVRNPKILL 1240 (1321)
T ss_dssp HHSSSSCT---TTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS----CSSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred HHhccCCC---CCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCC----cccCHHHHHHHHHHHHHHhCCCEEE
Confidence 99886321 1111 1234455555544 566888999864 4599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||||+||+.+...|.+.|+++ . .|+|+|+|+|+++ ....||+|++|++|+|++.|++++++.
T Consensus 1241 LDEaTSaLD~~tE~~Iq~~l~~~-~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1241 LDEATSALDTESEKVVQEALDRA-R-EGRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EESCCCSTTSHHHHHHHHHHTTT-S-SSSEEEEECSSSS--TTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred EeCccccCCHHHHHHHHHHHHHH-c-CCCEEEEeccCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999887 3 4899999999985 357799999999999999999998764
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3e-42 Score=368.10 Aligned_cols=195 Identities=25% Similarity=0.323 Sum_probs=168.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.+||+||||||||||+++|.|+++|. +|+|.+||.++.. .+|++||||+|++.+|.. |++|
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~e 510 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEE 510 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHH
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhH
Confidence 4899999999999999999999999999999999994 8999999999975 478899999999988865 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.|+.... +. +++.++++..+ |++..++.+|+.+. .||||||||++||||++++|+|||
T Consensus 511 NI~~g~~~~-----~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~----~LSGGQkQRiaiARAl~~~~~Ili 577 (1321)
T 4f4c_A 511 NISLGKEGI-----TR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRGT----QLSGGQKQRIAIARALVRNPKILL 577 (1321)
T ss_dssp HHHTTCTTC-----CH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSC----CCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHhhhcccc-----hH----HHHHHHHHHccchhHHHcCCCCCccEecCCCC----CCCHHHHHHHHHHHHHccCCCEEE
Confidence 999874211 11 12333444333 46678899998654 599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+||+.+...+.+.|.++. +|+|+|++||++. ..+.||+|++|++|+|+..|+.++++
T Consensus 578 LDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 578 LDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred EecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHH
Confidence 999999999999999999999984 3899999999984 46889999999999999999999876
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.2e-41 Score=338.12 Aligned_cols=187 Identities=25% Similarity=0.302 Sum_probs=160.8
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
+||++.+||+++|+|||||||||||++|+|+++|+ +|+|.+ ...+||+||+..+++.+||.|++.+..
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~---------~~~i~~v~Q~~~~~~~~tv~e~~~~~~ 442 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW---------DLTVAYKPQYIKAEYEGTVYELLSKID 442 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC---------CCCEEEECSSCCCCCSSBHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE---------eeEEEEEecCccCCCCCcHHHHHHhhh
Confidence 45668999999999999999999999999999994 799976 246999999987778899999886641
Q ss_pred HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHH
Q psy2520 86 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 165 (290)
... . ...+.+.++++.+++.+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 443 ~~~----~---~~~~~~~~~l~~~~l~~~~~~~~--------~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~ 507 (607)
T 3bk7_A 443 SSK----L---NSNFYKTELLKPLGIIDLYDRNV--------EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 507 (607)
T ss_dssp HHH----H---HCHHHHHHTHHHHTCTTTTTSBG--------GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred ccC----C---CHHHHHHHHHHHcCCchHhcCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHH
Confidence 110 0 11244678999999998889884 44999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC--CeEEEEcCHHHHHH
Q psy2520 166 SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFIGSKDAALA 220 (290)
Q Consensus 166 ~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~ 220 (290)
..++++|++++++.|.|||+||||+ .++..+|||+++|++ |+++..|++++++.
T Consensus 508 ~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 508 LAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999655689999999997 578899999999986 88888999988764
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.9e-42 Score=364.03 Aligned_cols=203 Identities=23% Similarity=0.321 Sum_probs=165.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.++.. .+|+.||||+|++.+++. ||+|
T Consensus 407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~e 482 (1284)
T 3g5u_A 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAE 482 (1284)
T ss_dssp EEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHH
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999864 367889999999998876 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.|+.............+...+.+.++. +.+..++.+++. ..+|||||||||+|||||+.+|+||||||||++
T Consensus 483 Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~----g~~LSgGq~QriaiARal~~~p~iliLDEpts~ 556 (1284)
T 3g5u_A 483 NIRYGREDVTMDEIEKAVKEANAYDFIMK--LPHQFDTLVGER----GAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556 (1284)
T ss_dssp HHHHHCSSCCHHHHHHHHHHTTCHHHHHH--STTGGGCCCSSS----SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCS
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHh--ccccccccccCC----CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 99987421111111111111112233333 344566777764 456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+.+...+.+.++.+ . .|+|+|++||++. .+ ..||+|++|++|++++.|++++++.
T Consensus 557 LD~~~~~~i~~~l~~~-~-~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 557 LDTESEAVVQAALDKA-R-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp SCHHHHHHHHHHHHHH-H-TTSEEEEECSCHH-HH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-c-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999887 3 3899999999973 45 5699999999999999999998764
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-41 Score=334.42 Aligned_cols=187 Identities=25% Similarity=0.299 Sum_probs=159.3
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
+||++.+||+++|+||||||||||+++|+|+++|. +|+|.+ ...+||+||+....+.+||.|++....
T Consensus 305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~---------~~~i~~v~Q~~~~~~~~tv~~~~~~~~ 372 (538)
T 1yqt_A 305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW---------DLTVAYKPQYIKADYEGTVYELLSKID 372 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC---------CCCEEEECSSCCCCCSSBHHHHHHHHH
T ss_pred CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE---------CceEEEEecCCcCCCCCcHHHHHHhhh
Confidence 45667999999999999999999999999999994 799975 236999999987778899988876531
Q ss_pred HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHH
Q psy2520 86 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 165 (290)
... .. ..+.+.++++.+++.+..++++ .+|||||||||+|||+|+.+|++|||||||+|||+.++
T Consensus 373 ~~~----~~---~~~~~~~~l~~~~l~~~~~~~~--------~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~ 437 (538)
T 1yqt_A 373 ASK----LN---SNFYKTELLKPLGIIDLYDREV--------NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 437 (538)
T ss_dssp HHH----HT---CHHHHHHTTTTTTCGGGTTSBG--------GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred ccC----CC---HHHHHHHHHHHcCChhhhcCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 110 00 1234678899999988888884 45999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC--CeEEEEcCHHHHHH
Q psy2520 166 SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFIGSKDAALA 220 (290)
Q Consensus 166 ~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~ 220 (290)
..++++|++++++.|.|||+||||+ .++..+|||+++|++ |+++..|++++++.
T Consensus 438 ~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 438 LAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999998555689999999997 578899999999986 78888999987764
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.6e-41 Score=361.62 Aligned_cols=198 Identities=24% Similarity=0.364 Sum_probs=164.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||++||+||||||||||+++|+|+++|. +|+|.++|+++.. .+|+.++||||++.+++ .||+|
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~e 1125 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAE 1125 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHH
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHH
Confidence 4899999999999999999999999999999999994 8999999999864 36788999999997775 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc-------CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL-------GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++...... ... .+.+.++.. .+.+..++.+++. ..+|||||||||+|||||+.+|++||
T Consensus 1126 Ni~~~~~~~~~---~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~----G~~LSgGq~Qrv~iARal~~~p~iLi 1194 (1284)
T 3g5u_A 1126 NIAYGDNSRVV---SYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDK----GTQLSGGQKQRIAIARALVRQPHILL 1194 (1284)
T ss_dssp HHTCCCSSCCC---CHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTT----SCSSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred HHhccCCCCCC---CHH----HHHHHHHHhCcHHHHHhCccccccccCCC----CCccCHHHHHHHHHHHHHHcCCCEEE
Confidence 99876422111 111 112223332 2345667777774 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.+...+.+.|++. . .|+|+|++||++. .+ ..||||++|++|+++..|++++++.
T Consensus 1195 LDEpTs~lD~~~~~~i~~~l~~~-~-~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1195 LDEATSALDTESEKVVQEALDKA-R-EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp EESCSSSCCHHHHHHHHHHHHHH-S-SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHh-C-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999886 4 4899999999985 45 5699999999999999999998763
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.2e-41 Score=330.13 Aligned_cols=186 Identities=22% Similarity=0.278 Sum_probs=156.7
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
||++++||+++|+||||||||||+++|+|+++|+ +|+|.+++ +.++|++|+....+.+||++|+.+...
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~--------~~i~~~~q~~~~~~~~tv~~~l~~~~~ 356 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK--------QILSYKPQRIFPNYDGTVQQYLENASK 356 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC--------CCEEEECSSCCCCCSSBHHHHHHHHCS
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC--------eeeEeechhcccccCCCHHHHHHHhhh
Confidence 5678999999999999999999999999999994 89999765 358999998766678899999987421
Q ss_pred hcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHH
Q psy2520 87 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 166 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 166 (290)
... .. ....+.++++.+++.+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 357 ~~~-~~-----~~~~~~~~l~~~~l~~~~~~~~--------~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 422 (538)
T 3ozx_A 357 DAL-ST-----SSWFFEEVTKRLNLHRLLESNV--------NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERY 422 (538)
T ss_dssp STT-CT-----TSHHHHHTTTTTTGGGCTTSBG--------GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred hcc-ch-----hHHHHHHHHHHcCCHHHhcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 110 01 1123578899999998889884 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC--CeEEEEcCHHHH
Q psy2520 167 KLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFIGSKDAA 218 (290)
Q Consensus 167 ~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~ 218 (290)
.++++|++++++.|.|||+||||+ .++..+||||++|++ |.....+++.++
T Consensus 423 ~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 423 IVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 999999999666799999999997 578899999999986 556666666543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-40 Score=328.37 Aligned_cols=189 Identities=22% Similarity=0.257 Sum_probs=159.4
Q ss_pred cceEEEEeCC-----eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSG-----TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~G-----e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.++||++.+| |+++|+|||||||||||++|+|+++|+ +|+. + .+..++|++|+.......||+
T Consensus 364 ~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~---~~~~i~~~~q~~~~~~~~tv~ 431 (608)
T 3j16_B 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I---PKLNVSMKPQKIAPKFPGTVR 431 (608)
T ss_dssp SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C---CSCCEEEECSSCCCCCCSBHH
T ss_pred CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c---cCCcEEEecccccccCCccHH
Confidence 3789999988 789999999999999999999999994 6862 1 134699999987666667999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
+++... .+... .. ...+.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 432 e~~~~~--~~~~~-~~----~~~~~~~l~~l~l~~~~~~~--------~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 432 QLFFKK--IRGQF-LN----PQFQTDVVKPLRIDDIIDQE--------VQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp HHHHHH--CSSTT-TS----HHHHHHTHHHHTSTTTSSSB--------SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHHHH--hhccc-cc----HHHHHHHHHHcCChhhhcCC--------hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 987542 11111 11 13356789999999999998 55599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC--CeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~ 220 (290)
|||+.++..++++|++++++.|.|||+||||+ .++..+|||+++|++ |+++..|+|++++.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 99999999999999998655689999999997 588899999999996 89999999988764
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.3e-40 Score=328.88 Aligned_cols=205 Identities=24% Similarity=0.296 Sum_probs=136.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHH---------------------HHHHcCCCCCCC----CccEEEECCEecCccc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLL---------------------AALSQRLPDDCI----IDGDIRVNGKPVEGKF 58 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl---------------------~~l~G~~~~~~~----~~G~I~i~G~~~~~~~ 58 (290)
.||||++++||+++|+||||||||||+ +++.|+..|+.. ..|.|.++|.+.....
T Consensus 35 ~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~ 114 (670)
T 3ux8_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNP 114 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----
T ss_pred eccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccc
Confidence 589999999999999999999999998 888888887410 1466777776654333
Q ss_pred cccEEEEccCCC-------------------CCCCCCHHHHHHHHHHhcCchhhhH--HH---HHHHHHHHHHHcCCCCc
Q psy2520 59 RSACGFMYQHDL-------------------FSPSLTVYEHLYFMALLKLDRRVKA--YQ---RIALINSLLIELGLMNS 114 (290)
Q Consensus 59 ~~~ig~v~Q~~~-------------------~~~~lTv~e~l~~~~~~~~~~~~~~--~~---~~~~~~~~l~~~~l~~~ 114 (290)
+..+|+++|... .++.+||+||+.+............ .. ......++++.+||.+.
T Consensus 115 ~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 194 (670)
T 3ux8_A 115 RSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYL 194 (670)
T ss_dssp CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTTC
T ss_pred hhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 445566655432 2467899999987532211110000 00 00112246888999765
Q ss_pred -cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 115 -QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 115 -~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
.++++ .+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++ +.|.|||+||||+
T Consensus 195 ~~~~~~--------~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~-~~g~tvi~vtHd~- 264 (670)
T 3ux8_A 195 TLSRSA--------GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHDE- 264 (670)
T ss_dssp CTTCBG--------GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-HTTCEEEEECCCH-
T ss_pred hhcCCc--------ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCH-
Confidence 57774 4599999999999999999998 999999999999999999999999995 4599999999997
Q ss_pred HHHHhhcCeEEEE------eCCeEEEEcCHHHHH
Q psy2520 192 SELIDMFDKIILL------ADSRTAFIGSKDAAL 219 (290)
Q Consensus 192 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 219 (290)
.. ...||++++| ++|++++.|+++++.
T Consensus 265 ~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 265 DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 34 4579999999 899999999998875
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.5e-39 Score=315.34 Aligned_cols=178 Identities=26% Similarity=0.274 Sum_probs=146.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE---------EECCEecCc------cccccEEEEccC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI---------RVNGKPVEG------KFRSACGFMYQH 68 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I---------~i~G~~~~~------~~~~~ig~v~Q~ 68 (290)
.++| .+++||+++|+||||||||||||+|+|+++|+ +|++ .++|.++.. ..+..+++++|.
T Consensus 39 ~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~ 114 (538)
T 1yqt_A 39 YRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114 (538)
T ss_dssp ECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSC
T ss_pred cCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhh
Confidence 4677 88999999999999999999999999999985 6885 456765432 123458899997
Q ss_pred CCCCCC---CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH
Q psy2520 69 DLFSPS---LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 145 (290)
Q Consensus 69 ~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~ 145 (290)
..+++. .|+.|++... .. .+++.++++.+|+.+..++++ .+|||||||||+||+||+
T Consensus 115 ~~~~~~~~~~~v~e~~~~~---~~---------~~~~~~~l~~lgl~~~~~~~~--------~~LSgGekQRv~iAraL~ 174 (538)
T 1yqt_A 115 VDLIPKAVKGKVIELLKKA---DE---------TGKLEEVVKALELENVLEREI--------QHLSGGELQRVAIAAALL 174 (538)
T ss_dssp GGGSGGGCCSBHHHHHHHH---CS---------SSCHHHHHHHTTCTTTTTSBG--------GGCCHHHHHHHHHHHHHH
T ss_pred hhhcchhhhccHHHHHhhh---hH---------HHHHHHHHHHcCCChhhhCCh--------hhCCHHHHHHHHHHHHHh
Confidence 443332 3888887531 10 123568999999998888884 459999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCC
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 207 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G 207 (290)
.+|++|||||||++||+.++..++++|+++++ .|.|||+||||+ .++..+||+|++|.+|
T Consensus 175 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~-~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDL-AVLDYLSDIIHVVYGE 234 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCSEEEEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999955 599999999997 5788899999999864
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.4e-39 Score=318.52 Aligned_cols=178 Identities=26% Similarity=0.295 Sum_probs=146.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE---------EECCEecCc------cccccEEEEccC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI---------RVNGKPVEG------KFRSACGFMYQH 68 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I---------~i~G~~~~~------~~~~~ig~v~Q~ 68 (290)
.++| .+++||+++|+|||||||||||++|+|+++|+ +|++ .++|.++.. ..+..+++++|.
T Consensus 109 ~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 109 YRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp ECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred CCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 4677 78999999999999999999999999999995 6885 456765532 123458899986
Q ss_pred CCCCC---CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH
Q psy2520 69 DLFSP---SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 145 (290)
Q Consensus 69 ~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~ 145 (290)
..+++ ..||.|++... .. .+++.++++.+||.+..++.+ .+|||||||||+|||||+
T Consensus 185 ~~~~~~~~~~tv~e~l~~~----~~--------~~~~~~~L~~lgL~~~~~~~~--------~~LSGGekQRvaIAraL~ 244 (607)
T 3bk7_A 185 VDLLPKAVKGKVRELLKKV----DE--------VGKFEEVVKELELENVLDREL--------HQLSGGELQRVAIAAALL 244 (607)
T ss_dssp GGGGGGTCCSBHHHHHHHT----CC--------SSCHHHHHHHTTCTTGGGSBG--------GGCCHHHHHHHHHHHHHH
T ss_pred hhhchhhccccHHHHhhhh----HH--------HHHHHHHHHHcCCCchhCCCh--------hhCCHHHHHHHHHHHHHh
Confidence 43222 23899988531 00 123568999999999999884 459999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCC
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 207 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G 207 (290)
.+|++|||||||++||+.++..++++|+++++ .|.|||+||||+ .++..+||+|++|+++
T Consensus 245 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl-~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDL-AVLDYLSDVIHVVYGE 304 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCSEEEEEESC
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecCh-HHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999954 589999999997 5788899999999865
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.1e-37 Score=310.22 Aligned_cols=192 Identities=29% Similarity=0.367 Sum_probs=145.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHH----------------------cCCCCCCCCccEEEECCEecCccc---
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALS----------------------QRLPDDCIIDGDIRVNGKPVEGKF--- 58 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~----------------------G~~~~~~~~~G~I~i~G~~~~~~~--- 58 (290)
.||||+|++||+++|+||||||||||+++|+ |+..+ .|.|.++|.++....
T Consensus 339 ~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 339 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSSTTCC
T ss_pred ccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCCCCcc
Confidence 5899999999999999999999999998754 33333 467888887763200
Q ss_pred ------------------------------------------cccEEEEccCCCCCC-----------------------
Q psy2520 59 ------------------------------------------RSACGFMYQHDLFSP----------------------- 73 (290)
Q Consensus 59 ------------------------------------------~~~ig~v~Q~~~~~~----------------------- 73 (290)
....|+++|+..+++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 011244444333222
Q ss_pred ---------CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHH
Q psy2520 74 ---------SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATE 143 (290)
Q Consensus 74 ---------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~a 143 (290)
.+||.||+.|.... .. .+++.+.+..+++.. ..+++ +.+|||||||||+||||
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~------~~---~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI------PK---IKRKLETLYDVGLGYMKLGQP--------ATTLSGGEAQRVKLAAE 557 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC------HH---HHHHHHHHHHTTCTTSBTTCC--------GGGCCHHHHHHHHHHHH
T ss_pred cCCCHHHHhhCCHHHHHHHHHHh------hh---HHHHHHHHHHcCCchhhccCC--------chhCCHHHHHHHHHHHH
Confidence 47899998875321 11 123457788899864 45666 44599999999999999
Q ss_pred HHhCCC---eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcC
Q psy2520 144 LLTDPA---LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGS 214 (290)
Q Consensus 144 L~~~p~---llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~ 214 (290)
|+.+|+ +|||||||+|||+.++..++++|++++ +.|.|||+||||+. . ...||||++| ++|++++.|+
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~-~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV-DNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEEC
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecC
Confidence 999874 999999999999999999999999995 45999999999973 4 4789999999 8999999999
Q ss_pred HHHHH
Q psy2520 215 KDAAL 219 (290)
Q Consensus 215 ~~~~~ 219 (290)
++++.
T Consensus 635 ~~~~~ 639 (670)
T 3ux8_A 635 PEEVA 639 (670)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99764
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.9e-37 Score=316.12 Aligned_cols=181 Identities=23% Similarity=0.299 Sum_probs=150.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC-CCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD-LFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~-~~~~~lTv~e~l~ 82 (290)
.|+||++++|++++|+||||||||||||+|+| |+| +|.+.... ..++|++|+. .+++.+||.||+.
T Consensus 452 ~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~~--~~~~~v~q~~~~~~~~ltv~e~l~ 518 (986)
T 2iw3_A 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEE--CRTVYVEHDIDGTHSDTSVLDFVF 518 (986)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTTT--SCEEETTCCCCCCCTTSBHHHHHH
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccccc--eeEEEEcccccccccCCcHHHHHH
Confidence 47999999999999999999999999999995 222 34332211 2378999874 6788999999997
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
+ .... . .+++.++++.+|+. +..+++++ +|||||||||+|||||+.+|++|||||||++||
T Consensus 519 ~--~~~~---~-----~~~v~~~L~~lgL~~~~~~~~~~--------~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD 580 (986)
T 2iw3_A 519 E--SGVG---T-----KEAIKDKLIEFGFTDEMIAMPIS--------ALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580 (986)
T ss_dssp T--TCSS---C-----HHHHHHHHHHTTCCHHHHHSBGG--------GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCC
T ss_pred H--hhcC---H-----HHHHHHHHHHcCCChhhhcCCcc--------cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence 5 1111 1 34567899999995 56777744 499999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 220 (290)
+.++..++++|++ .|.|||++|||+ .++..+||++++|++|+++ +.|++++++.
T Consensus 581 ~~~~~~l~~~L~~----~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 581 TVNVAWLVNYLNT----CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHHHHHH----SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999987 388999999997 5788999999999999997 6899987653
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.6e-37 Score=302.23 Aligned_cols=173 Identities=25% Similarity=0.308 Sum_probs=138.6
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE-----------EECCEecCcc----c--cccEEEEccC----
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI-----------RVNGKPVEGK----F--RSACGFMYQH---- 68 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I-----------~i~G~~~~~~----~--~~~ig~v~Q~---- 68 (290)
.++||++||+||||||||||+|+|+|+++|+ +|+| .++|+++... . ...+...+|.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 4689999999999999999999999999995 7998 6777765321 1 1234444443
Q ss_pred CCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 69 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
+.++ ..||.+++... .. .+++.++++.+++.+..++.+. +|||||||||+||+||+.+|
T Consensus 99 ~~~~-~~~v~~~l~~~---~~---------~~~~~~~l~~l~l~~~~~~~~~--------~LSgGe~Qrv~iA~aL~~~p 157 (538)
T 3ozx_A 99 SKFL-KGTVNEILTKI---DE---------RGKKDEVKELLNMTNLWNKDAN--------ILSGGGLQRLLVAASLLREA 157 (538)
T ss_dssp GTTC-CSBHHHHHHHH---CC---------SSCHHHHHHHTTCGGGTTSBGG--------GCCHHHHHHHHHHHHHHSCC
T ss_pred hhhc-cCcHHHHhhcc---hh---------HHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHHcCC
Confidence 2222 34787765321 10 1235678999999999999844 49999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
++|||||||++||+.++..++++|+++ ++ |+|||+|||++ .++..+||+|++|++|..
T Consensus 158 ~illlDEPts~LD~~~~~~l~~~l~~l-~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 158 DVYIFDQPSSYLDVRERMNMAKAIREL-LK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHH-CT-TSEEEEECSCH-HHHHHHCSEEEEEEEETT
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHH-hC-CCEEEEEEeCh-HHHHhhCCEEEEecCCcc
Confidence 999999999999999999999999999 55 89999999997 588999999999987543
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.4e-36 Score=312.65 Aligned_cols=188 Identities=24% Similarity=0.303 Sum_probs=147.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCC----CCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF----SPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~----~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+|+|+|+++|+ +|+|+++|. ..+||++|++.. ....|+.+
T Consensus 690 ~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~-------~~I~yv~Q~~~~~l~~~~~~t~~e 759 (986)
T 2iw3_A 690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN-------CRIAYIKQHAFAHIESHLDKTPSE 759 (986)
T ss_dssp EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT-------CCEEEECHHHHHHGGGCTTSCHHH
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc-------cceEeeccchhhhhhcccccCHHH
Confidence 4799999999999999999999999999999999994 899999863 248999997421 23457888
Q ss_pred HHHHHHHhc----------------------------------------------------------------C------
Q psy2520 80 HLYFMALLK----------------------------------------------------------------L------ 89 (290)
Q Consensus 80 ~l~~~~~~~----------------------------------------------------------------~------ 89 (290)
++.+..... .
T Consensus 760 ~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~ 839 (986)
T 2iw3_A 760 YIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMS 839 (986)
T ss_dssp HHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCG
T ss_pred HHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccch
Confidence 776532100 0
Q ss_pred ------chh-hhH---------------------HHHHHHHHHHHHHcCCCC-c-cCcccCCcCCCCCCCCChHHHHHHH
Q psy2520 90 ------DRR-VKA---------------------YQRIALINSLLIELGLMN-S-QHTRIGSSSITQKVVLSGGERKRLS 139 (290)
Q Consensus 90 ------~~~-~~~---------------------~~~~~~~~~~l~~~~l~~-~-~~~~v~~~~~~~~~~LSgGqrqRv~ 139 (290)
+.. ... ....+++.++++.+||.. . .+++ +.+|||||||||+
T Consensus 840 ~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~--------~~~LSGGQkQRVa 911 (986)
T 2iw3_A 840 VDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSR--------IRGLSGGQKVKLV 911 (986)
T ss_dssp GGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSC--------GGGCCHHHHHHHH
T ss_pred hhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCC--------ccccCHHHHHHHH
Confidence 000 000 001245788999999975 3 4666 3459999999999
Q ss_pred HHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 140 FATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 140 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
|||+|+.+|++|||||||+|||+.+...+++.|+++ +.|||++|||+ .++..+||++++|++|+++..|+
T Consensus 912 LArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~-e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 912 LAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSA-EFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCH-HHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999888654 56999999996 57888999999999999987764
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-36 Score=297.39 Aligned_cols=180 Identities=22% Similarity=0.284 Sum_probs=137.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE-----------EECCEecCc----cccccE--EEEccCCCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI-----------RVNGKPVEG----KFRSAC--GFMYQHDLF 71 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I-----------~i~G~~~~~----~~~~~i--g~v~Q~~~~ 71 (290)
.+++||+++|+||||||||||||+|+|+++|+ +|+| ++.|.++.. ...+.+ .+.+|....
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDN 175 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhh
Confidence 45789999999999999999999999999995 7987 344433321 011122 233332111
Q ss_pred ------CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH
Q psy2520 72 ------SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 145 (290)
Q Consensus 72 ------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~ 145 (290)
.+..++.+++... .. ...+++.++++.++|.+..++. +.+|||||||||+||+||+
T Consensus 176 ~~~~~~~~~~~v~~~l~~~----~~------~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgGe~Qrv~iAraL~ 237 (608)
T 3j16_B 176 IPRAIKGPVQKVGELLKLR----ME------KSPEDVKRYIKILQLENVLKRD--------IEKLSGGELQRFAIGMSCV 237 (608)
T ss_dssp HHHHCSSSSSHHHHHHHHH----CC------SCHHHHHHHHHHHTCTGGGGSC--------TTTCCHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHHHHHhhh----hh------hHHHHHHHHHHHcCCcchhCCC--------hHHCCHHHHHHHHHHHHHH
Confidence 1122455444321 00 0123567899999999999998 5559999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
.+|++|||||||++||+.++..++++|+++ .+.|.|||+|||++ .++..+||++++|++|..++
T Consensus 238 ~~p~llllDEPts~LD~~~~~~l~~~l~~l-~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSL-LAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHGG-GTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTE
T ss_pred hCCCEEEEECcccCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999999 45689999999997 58889999999999876544
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-33 Score=288.44 Aligned_cols=196 Identities=28% Similarity=0.376 Sum_probs=149.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHH---------HHHHcCCCCCC---CCc------cEEEECCEecCcc--------
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLL---------AALSQRLPDDC---IID------GDIRVNGKPVEGK-------- 57 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl---------~~l~G~~~~~~---~~~------G~I~i~G~~~~~~-------- 57 (290)
.||||++++|++++|+||||||||||+ +.+.+...+.. ..+ +.+.+++.++...
T Consensus 601 k~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~ 680 (916)
T 3pih_A 601 KNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATY 680 (916)
T ss_dssp CSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHH
T ss_pred cccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccch
Confidence 589999999999999999999999997 44554433211 012 2355555443210
Q ss_pred -------------------------------------ccccEEEEccCCCCCCC--------------------------
Q psy2520 58 -------------------------------------FRSACGFMYQHDLFSPS-------------------------- 74 (290)
Q Consensus 58 -------------------------------------~~~~ig~v~Q~~~~~~~-------------------------- 74 (290)
..+..|+++++..+++.
T Consensus 681 ~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~ 760 (916)
T 3pih_A 681 TKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKN 760 (916)
T ss_dssp SSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBC
T ss_pred hhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCC
Confidence 01235788877666553
Q ss_pred ------CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 75 ------LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 75 ------lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
+||.|++.|+... . ...++.++|+.+||... .+++ +.+|||||||||+|||+|+.+
T Consensus 761 i~~vl~~tv~eal~f~~~~------~---~~~~~~~~L~~vGL~~~~lgq~--------~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 761 ISDILDMTVDEALEFFKNI------P---SIKRTLQVLHDVGLGYVKLGQP--------ATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp HHHHHSSBHHHHHHHTTTC------H---HHHHHHHHHHHTTGGGSBTTCC--------STTCCHHHHHHHHHHHHHTSC
T ss_pred HHHHhhCCHHHHHHHHhcc------h---hHHHHHHHHHHcCCchhhccCC--------ccCCCHHHHHHHHHHHHHhhC
Confidence 6788888775321 1 12345688999999653 3555 456999999999999999987
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHH
Q psy2520 148 P---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 218 (290)
Q Consensus 148 p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 218 (290)
| ++|||||||+|||+.++..+++.|++++ +.|.|||+|+|++ +. ...||+|++| ++|++++.|+++++
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~-~~G~TVIvI~HdL-~~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLV-DRGNTVIVIEHNL-DV-IKNADHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HH-HHhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 6 7999999999999999999999999994 4599999999997 34 4669999999 89999999999987
Q ss_pred H
Q psy2520 219 L 219 (290)
Q Consensus 219 ~ 219 (290)
+
T Consensus 901 ~ 901 (916)
T 3pih_A 901 A 901 (916)
T ss_dssp H
T ss_pred H
Confidence 5
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=3.6e-34 Score=293.17 Aligned_cols=196 Identities=30% Similarity=0.395 Sum_probs=149.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHH-cCC---------CCCC--CCcc------EEEECCEecCccc-------
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALS-QRL---------PDDC--IIDG------DIRVNGKPVEGKF------- 58 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~-G~~---------~~~~--~~~G------~I~i~G~~~~~~~------- 58 (290)
.||||+|++|++++|+|+||||||||+++|+ |.+ .+.. ...| .|.++|.++....
T Consensus 641 k~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty 720 (972)
T 2r6f_A 641 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATY 720 (972)
T ss_dssp CSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHH
T ss_pred ccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhh
Confidence 5899999999999999999999999999853 211 2210 0123 4888888763210
Q ss_pred ----------------cccEEEEccCCCCC----------------------C---------------------------
Q psy2520 59 ----------------RSACGFMYQHDLFS----------------------P--------------------------- 73 (290)
Q Consensus 59 ----------------~~~ig~v~Q~~~~~----------------------~--------------------------- 73 (290)
.+.+||++|...+. +
T Consensus 721 ~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~s 800 (972)
T 2r6f_A 721 TGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKN 800 (972)
T ss_dssp HTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBC
T ss_pred hhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCC
Confidence 13357777743221 1
Q ss_pred -----CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 74 -----SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 74 -----~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
.+||.|++.|+... .. ..++.++++.+||.. ..++. +.+|||||||||+||++|+.+
T Consensus 801 I~dvl~ltv~e~l~~~~~~------~~---~~~~~~~L~~~gL~~~~l~~~--------~~~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 801 IAEVLDMTVEDALDFFASI------PK---IKRKLETLYDVGLGYMKLGQP--------ATTLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp HHHHHTSBHHHHHHHTCSC------HH---HHHHHHHHHHTTCSSSBTTCC--------GGGCCHHHHHHHHHHHHHSSC
T ss_pred HHHhhhcCHHHHHHHHhcc------hh---HHHHHHHHHHcCCCcccccCc--------hhhCCHHHHHHHHHHHHHhcC
Confidence 35778887764211 11 123467899999987 66777 445999999999999999986
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHH
Q psy2520 148 P---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 218 (290)
Q Consensus 148 p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 218 (290)
| ++|||||||+|||+.++..++++|++++ +.|.|||++||++ .+ ...||+|++| ++|++++.|+++++
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~-~~G~TVIvisHdl-~~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el 940 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLV-DNGDTVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCCH-HH-HTTCSEEEEECSSSTTSCCSEEEEESHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEcCCH-HH-HHhCCEEEEEcCCCCCCCCEEEEecCHHHH
Confidence 5 9999999999999999999999999995 4699999999997 34 4689999999 78999999999976
Q ss_pred H
Q psy2520 219 L 219 (290)
Q Consensus 219 ~ 219 (290)
.
T Consensus 941 ~ 941 (972)
T 2r6f_A 941 A 941 (972)
T ss_dssp H
T ss_pred H
Confidence 4
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=7.5e-34 Score=289.69 Aligned_cols=109 Identities=28% Similarity=0.323 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2520 100 ALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTD---PALLLCDEPTTGLDSFSASKLIRMMREL 175 (290)
Q Consensus 100 ~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l 175 (290)
+++.++|+.++|... .++. +..|||||||||+||++|+.+ |++|||||||+|||+..+..++++|+++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~--------~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 779 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP--------ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL 779 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC--------GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCC--------cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 356789999999773 5676 445999999999999999996 7999999999999999999999999999
Q ss_pred HhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHHH
Q psy2520 176 TSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 219 (290)
Q Consensus 176 ~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 219 (290)
+ +.|.|||++|||+ .++ ..||+|++| ++|++++.|++++++
T Consensus 780 ~-~~G~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 780 V-DAGNTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-HTTCEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-hCCCEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 5 4599999999997 456 889999999 799999999999764
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=2.4e-33 Score=287.99 Aligned_cols=196 Identities=26% Similarity=0.361 Sum_probs=146.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHH-c----CCCCCCCCcc-------------EEEECCEecCcc--------
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALS-Q----RLPDDCIIDG-------------DIRVNGKPVEGK-------- 57 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~-G----~~~~~~~~~G-------------~I~i~G~~~~~~-------- 57 (290)
.||||+|++|++++|+|+||||||||+++|+ | .+.+.....| .|.+++.++...
T Consensus 659 k~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~paty 738 (993)
T 2ygr_A 659 RGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPATY 738 (993)
T ss_dssp CSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHHHH
T ss_pred cCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchhhh
Confidence 5899999999999999999999999999853 2 2221000123 355666655210
Q ss_pred ---------------ccccEEEEccCCCC----------------------CC---------------------------
Q psy2520 58 ---------------FRSACGFMYQHDLF----------------------SP--------------------------- 73 (290)
Q Consensus 58 ---------------~~~~ig~v~Q~~~~----------------------~~--------------------------- 73 (290)
..+.+||++|...+ ++
T Consensus 739 ~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~s 818 (993)
T 2ygr_A 739 TGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKT 818 (993)
T ss_dssp HTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTTBC
T ss_pred hhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccCCC
Confidence 01235677664322 11
Q ss_pred -----CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 74 -----SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 74 -----~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
.+||.|++.|+... .. ..++.++++.+||.. ..++. +..|||||||||+||++|+.+
T Consensus 819 i~dvl~ltv~e~l~~~~~~------~~---~~~~~~~L~~lgL~~~~l~~~--------~~~LSGGekQRv~LAraL~~~ 881 (993)
T 2ygr_A 819 VSEVLDMSIEEAAEFFEPI------AG---VHRYLRTLVDVGLGYVRLGQP--------APTLSGGEAQRVKLASELQKR 881 (993)
T ss_dssp HHHHHSSBHHHHHHHSTTC------HH---HHHHHHHHHHTTGGGSBTTCC--------GGGSCHHHHHHHHHHHHHSSC
T ss_pred HHHHhhccHHHHHHHhhcc------hH---HHHHHHHHHHcCCCcccccCc--------cccCCHHHHHHHHHHHHHHhC
Confidence 35777777664311 11 123467899999976 56777 445999999999999999986
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHH
Q psy2520 148 P---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 218 (290)
Q Consensus 148 p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 218 (290)
| ++|||||||+|||+.++..++++|++++ +.|.|||++||++ .++ ..||+|++| ++|++++.|+++++
T Consensus 882 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~-~~G~TVIvisHdl-~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el 958 (993)
T 2ygr_A 882 STGRTVYILDEPTTGLHFDDIRKLLNVINGLV-DKGNTVIVIEHNL-DVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDV 958 (993)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCCH-HHH-TTCSEEEEEESSSTTSCSEEEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEcCCH-HHH-HhCCEEEEECCCcCCCCCEEEEecCHHHH
Confidence 5 9999999999999999999999999995 4599999999997 344 789999999 78999999999976
Q ss_pred H
Q psy2520 219 L 219 (290)
Q Consensus 219 ~ 219 (290)
.
T Consensus 959 ~ 959 (993)
T 2ygr_A 959 A 959 (993)
T ss_dssp H
T ss_pred H
Confidence 5
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=2.8e-32 Score=258.51 Aligned_cols=204 Identities=20% Similarity=0.253 Sum_probs=141.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-----------------------------------CCCccEEE
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD-----------------------------------CIIDGDIR 48 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~-----------------------------------~~~~G~I~ 48 (290)
.++||.+.+| +++|+|||||||||||++|+++..+. ...+|+++
T Consensus 52 ~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~i~ 130 (415)
T 4aby_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAAR 130 (415)
T ss_dssp EEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEEEE
T ss_pred eeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceEEE
Confidence 4789999999 99999999999999999998776421 01268899
Q ss_pred ECCEecCc----cc-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCch--------------------------------
Q psy2520 49 VNGKPVEG----KF-RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-------------------------------- 91 (290)
Q Consensus 49 i~G~~~~~----~~-~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-------------------------------- 91 (290)
+||+++.. .+ +..+++++|++.++.. +..+...|.-......
T Consensus 131 ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~ 209 (415)
T 4aby_A 131 LSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPTS 209 (415)
T ss_dssp ETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcc
Confidence 99999864 22 3348999998755432 4444444321110000
Q ss_pred -------------------hh------hHHHHHHHHHHHHHHcCCCCcc----------------Cc---ccCCcC---C
Q psy2520 92 -------------------RV------KAYQRIALINSLLIELGLMNSQ----------------HT---RIGSSS---I 124 (290)
Q Consensus 92 -------------------~~------~~~~~~~~~~~~l~~~~l~~~~----------------~~---~v~~~~---~ 124 (290)
.. ........+.+.++.+++.... ++ .+.... .
T Consensus 210 i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (415)
T 4aby_A 210 LVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEEL 289 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCcc
Confidence 00 0000112344455556554310 00 010000 0
Q ss_pred CCCCC-CChHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE
Q psy2520 125 TQKVV-LSGGERKRLSFATELLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 201 (290)
Q Consensus 125 ~~~~~-LSgGqrqRv~ia~aL~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v 201 (290)
..+.. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++ . +|.|||+|||++ ++...||++
T Consensus 290 ~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l-~-~~~~vi~itH~~--~~~~~~d~i 365 (415)
T 4aby_A 290 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL-A-DTRQVLVVTHLA--QIAARAHHH 365 (415)
T ss_dssp CBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHH-T-TTSEEEEECSCH--HHHTTCSEE
T ss_pred cchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-h-CCCEEEEEeCcH--HHHhhcCeE
Confidence 00112 6999999999999999999 999999999999999999999999999 4 489999999996 456889999
Q ss_pred EEE----eCCeEEEEc
Q psy2520 202 ILL----ADSRTAFIG 213 (290)
Q Consensus 202 ~~l----~~G~i~~~g 213 (290)
++| .+|+++...
T Consensus 366 ~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 366 YKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEeccCCceEEEE
Confidence 999 999987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-36 Score=290.69 Aligned_cols=185 Identities=14% Similarity=0.088 Sum_probs=146.1
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc-E-EEECCEecCccccccEEEEccCCC---CCCCCCHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG-D-IRVNGKPVEGKFRSACGFMYQHDL---FSPSLTVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G-~-I~i~G~~~~~~~~~~ig~v~Q~~~---~~~~lTv~e 79 (290)
++||.+++|++++|+||||||||||+|+|+|+.+| .+| + |+++|. .++.++|+||+.. +.+.+||+|
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---FNAYQPLYINLD-----PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---HHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---cCCceeEEEcCC-----ccCCeeeeccchhhcccccccchhh
Confidence 57889999999999999999999999999999988 489 8 999982 3678999999874 455679999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHH--HHhCCCe----EEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE--LLTDPAL----LLC 153 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~a--L~~~p~l----lll 153 (290)
|+ |+........ . ...+.++++.+|+.+..+ + .+|||||||||+|||+ |+.+|++ |||
T Consensus 202 ni-~~~~~~~~~~-~----~~~~~~ll~~~gl~~~~~--~--------~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 202 PT-WGQSLTSGAT-L----LHNKQPMVKNFGLERINE--N--------KDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp TT-CSCBCBSSCC-S----SCCBCCEECCCCSSSGGG--C--------HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hh-cccccccCcc-h----HHHHHHHHHHhCCCcccc--h--------hhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 98 6432211100 0 122345677788876554 2 3499999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc--H---HHHhhcCe-----EEEEe-CCeEEEEcCHHHHH
Q psy2520 154 DE-PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS--S---ELIDMFDK-----IILLA-DSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DE-PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~--~---~~~~~~d~-----v~~l~-~G~i~~~g~~~~~~ 219 (290)
|| ||++||+. ...+.+++++ .+.|+|+++|+.. . ++..+||+ |++|+ +|+++ .|+++++.
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred eCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 99 99999999 5555555544 3679999999964 1 56689999 99999 99999 99987653
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=4.8e-29 Score=233.91 Aligned_cols=82 Identities=22% Similarity=0.339 Sum_probs=74.7
Q ss_pred CCCCChHHHHHHHHHHHHH------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCe
Q psy2520 127 KVVLSGGERKRLSFATELL------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 200 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~ 200 (290)
+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++ +.|.|||+|||++ . ....||+
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~-~~g~tvi~itH~~-~-~~~~~d~ 353 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE-RLNKVIVFITHDR-E-FSEAFDR 353 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGG-GSSSEEEEEESCH-H-HHTTCSC
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEecch-H-HHHhCCE
Confidence 4569999999999999999 6999999999999999999999999999994 5699999999997 3 4788999
Q ss_pred EEEEeCCeEEE
Q psy2520 201 IILLADSRTAF 211 (290)
Q Consensus 201 v~~l~~G~i~~ 211 (290)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=6.1e-29 Score=229.16 Aligned_cols=87 Identities=18% Similarity=0.338 Sum_probs=72.7
Q ss_pred CCCCChHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE-
Q psy2520 127 KVVLSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI- 201 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v- 201 (290)
+..||+|||||++||++|+ .+|++|||||||++||+..+..++++|+++ .+ |.|||++||++ ++...||++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~-~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SK-HTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TT-TSEEEEECCCT--TGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CCeEEEEECCH--HHHhhCceEE
Confidence 3459999999999999998 578999999999999999999999999998 44 78999999995 467899987
Q ss_pred -EEEeCCeE-EEEcCHHH
Q psy2520 202 -ILLADSRT-AFIGSKDA 217 (290)
Q Consensus 202 -~~l~~G~i-~~~g~~~~ 217 (290)
++|.+|.. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 78887754 44455444
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=1.3e-31 Score=233.02 Aligned_cols=145 Identities=16% Similarity=0.180 Sum_probs=96.1
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHHH-HHHH
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEHL-YFMA 85 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~l-~~~~ 85 (290)
+++|++++|+|||||||||||++|+|+ +|+ +|+|. +.++.. ..++.+||+||++ +||+ .+..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~--~~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~ 84 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVS--RIILTRPAVEAGEKLGFLPGTL--------NEKIDPYLR 84 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCS--EEEEEECSCCTTCCCCSSCC--------------CTTTH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeee--eEEecCCchhhhcceEEecCCH--------HHHHHHHHH
Confidence 478999999999999999999999999 884 79884 222221 3567899999975 4444 2211
Q ss_pred ----HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 86 ----LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 86 ----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
..... .. .+.+.++++. + | ||||||+|||||+.+|++|||||||++
T Consensus 85 ~~~~~~~~~--~~----~~~~~~~l~~-g-------------------l--Gq~qrv~lAraL~~~p~lllLDEPts~-- 134 (208)
T 3b85_A 85 PLHDALRDM--VE----PEVIPKLMEA-G-------------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT-- 134 (208)
T ss_dssp HHHHHHTTT--SC----TTHHHHHHHT-T-------------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC--
T ss_pred HHHHHHHHh--cc----HHHHHHHHHh-C-------------------C--chHHHHHHHHHHhcCCCEEEEeCCccc--
Confidence 01100 00 1223444442 1 4 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
++..++++|+++ . .|+||| +|||+. ++ ++....++|.
T Consensus 135 --~~~~l~~~l~~l-~-~g~tii-vtHd~~-~~----~~~~~~~~G~ 171 (208)
T 3b85_A 135 --TPAQMKMFLTRL-G-FGSKMV-VTGDIT-QV----DLPGGQKSGL 171 (208)
T ss_dssp --CHHHHHHHHTTB-C-TTCEEE-EEEC-----------------CC
T ss_pred --cHHHHHHHHHHh-c-CCCEEE-EECCHH-HH----hCcCCCCCcH
Confidence 889999999988 4 489999 999973 33 3344445553
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.95 E-value=1.3e-29 Score=213.08 Aligned_cols=146 Identities=16% Similarity=0.225 Sum_probs=101.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCC-CCCCCHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF-SPSLTVYEHLYF 83 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~-~~~lTv~e~l~~ 83 (290)
||||++++||+++|+||||||||||++++.+ |...+++. . ..|+++|++.- ...-++++.+.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d----~---~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSD----F---CRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHH----H---HHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccH----H---HHHHhcCcccchhhHHHHHHHHHH
Confidence 6999999999999999999999999998542 22222111 1 12667776421 000011221111
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
........+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 65 ------------------~~~~~~~~g~~~~~~~~---------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 65 ------------------IVSKRLQLGKLTVVDAT---------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQER 117 (171)
T ss_dssp ------------------HHHHHHHTTCCEEEESC---------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred ------------------HHHHHHhCCCeEEEECC---------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHH
Confidence 11122234544333332 337999999999999999999999999999999999
Q ss_pred ----------------HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHH
Q psy2520 164 ----------------SASKLIRMMRELTSQRKKTVLCTIHQPSSELI 195 (290)
Q Consensus 164 ----------------~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~ 195 (290)
.+..+++.|++++++ |.|+|++||++ .++.
T Consensus 118 ~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 118 NKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP-EEVE 163 (171)
T ss_dssp HHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH-HHHH
T ss_pred HhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH-HHhh
Confidence 668899999998555 99999999997 3443
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.94 E-value=2.8e-30 Score=245.38 Aligned_cols=172 Identities=15% Similarity=0.186 Sum_probs=137.3
Q ss_pred ceEEEEeCCe--------------------EEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEE
Q psy2520 5 ELTGAALSGT--------------------LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGF 64 (290)
Q Consensus 5 ~is~~~~~Ge--------------------~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~ 64 (290)
+||+.+++|+ +++|+||||||||||+|+|+|+.+|+ +|+|.++|.+++ + .+|
T Consensus 41 ~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---~--~~~ 112 (413)
T 1tq4_A 41 LIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---M--ERH 112 (413)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------C--CCE
T ss_pred hccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---e--eEE
Confidence 6888999999 99999999999999999999999984 799999998753 2 278
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChH--HHHHHHHHH
Q psy2520 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG--ERKRLSFAT 142 (290)
Q Consensus 65 v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgG--qrqRv~ia~ 142 (290)
++|++ .++.+|++|++.++.. ...+.++++.+++.+.. .. +. ||+| |+||++||+
T Consensus 113 v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~-~~--------~~-lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 113 PYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYD-FF--------II-ISATRFKKNDIDIAK 169 (413)
T ss_dssp EEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCS-EE--------EE-EESSCCCHHHHHHHH
T ss_pred ecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccC-Ce--------EE-eCCCCccHHHHHHHH
Confidence 99975 5778899988755310 12356788888886543 22 22 9999 999999999
Q ss_pred HHHh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh----cC----CcEEEEEeCCCcHH--HHhhcCeEE
Q psy2520 143 ELLT----------DPALLLCDEPTTGLDSFSASKLIRMMRELTS----QR----KKTVLCTIHQPSSE--LIDMFDKII 202 (290)
Q Consensus 143 aL~~----------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~----~~----g~tii~~tH~~~~~--~~~~~d~v~ 202 (290)
+|+. +|++++|||||+|||+.++.++++.|+++.. +. ..+|++++|+.. + +.+++|++.
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~-~~~~e~L~d~I~ 248 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVC-HYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTT-STTHHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCC-ccCHHHHHHHHH
Confidence 9999 9999999999999999999999999999841 22 367889999874 4 788899885
Q ss_pred -EEeCCe
Q psy2520 203 -LLADSR 208 (290)
Q Consensus 203 -~l~~G~ 208 (290)
.|..|.
T Consensus 249 ~~Lpeg~ 255 (413)
T 1tq4_A 249 SDLPIYK 255 (413)
T ss_dssp HHSCGGG
T ss_pred HhCccch
Confidence 566665
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.94 E-value=1.3e-31 Score=231.56 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=119.8
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 87 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~ 87 (290)
.++++|++++|+||||||||||+++|+|+++. ..+.+.+.+.+.....++.++|+||++.+++.+|+.+++.+....
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~ 91 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEI 91 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhh
Confidence 57899999999999999999999999999853 233222222221112356799999998777777777765421100
Q ss_pred cC---chhhhHHHHHHHHHHH------HHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 88 KL---DRRVKAYQRIALINSL------LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 88 ~~---~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
.. ..........+++.+. ++.+|+.+..++. +..|| +|+.+|++++|||||+
T Consensus 92 ~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~lS-----------~l~~~p~~~~LDep~~ 152 (207)
T 1znw_A 92 HGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM--------PEAVT-----------VFLAPPSWQDLQARLI 152 (207)
T ss_dssp GGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC--------TTSEE-----------EEEECSCHHHHHHHHH
T ss_pred cCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc--------CCcEE-----------EEEECCCHHHHHHHHH
Confidence 00 0011222233334444 4455555455555 34476 8999999999999999
Q ss_pred CC----CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 159 GL----DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 159 gL----D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
++ |+..+.++.+.+++++++.|.|+|++|||+ +++..+||++++|.
T Consensus 153 ~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 153 GRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 98 788999999999999655689999999997 58999999999984
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.94 E-value=1.7e-28 Score=224.72 Aligned_cols=174 Identities=17% Similarity=0.170 Sum_probs=135.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cc--cccEEEEccCCC-CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KF--RSACGFMYQHDL-FS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~--~~~ig~v~Q~~~-~~ 72 (290)
..+||.+++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. .+ +..++|++|++. ++
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 3688899999999999999999999999999999884 7999999998743 12 346999999988 88
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC--e
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--L 150 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--l 150 (290)
+.+||+|++.++..... . ..+++.+|+.+..++.+ .+|| |||++|||+|+.+|+ +
T Consensus 168 ~~~~v~e~l~~~~~~~~-d-----------~~lldt~gl~~~~~~~~--------~eLS---kqr~~iaral~~~P~e~l 224 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEGY-D-----------VVLCDTSGRLHTNYSLM--------EELI---ACKKAVGKIVSGAPNEIL 224 (302)
T ss_dssp HHHHHHHHHHHHHHTTC-S-----------EEEECCCCCSSCCHHHH--------HHHH---HHHHHHHTTSTTCCSEEE
T ss_pred HHHHHHHHHHHHHHcCC-c-----------chHHhcCCCCcchhHHH--------HHHH---HHHHHHHHhhccCCCeeE
Confidence 88999999987642110 0 12456778877666664 4499 999999999999999 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC--------cHHHHhhcCeEEEEeCCeEE
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP--------SSELIDMFDKIILLADSRTA 210 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~--------~~~~~~~~d~v~~l~~G~i~ 210 (290)
|+|| ||+|||+..+. +++.++.|.|+|++||.- ...+....+.|.++..|+.+
T Consensus 225 LvLD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 225 LVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp EEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred EEEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9999 99999998652 445334589999999931 12344567889999999753
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.94 E-value=8.2e-28 Score=203.99 Aligned_cols=144 Identities=16% Similarity=0.126 Sum_probs=101.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHHHHHHHHhcCc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD 90 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~ 90 (290)
.++|+||||||||||+++|+|++. |.++|.+... ..++.+||++|+. ++.+++ + ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~-- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF-- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc--
Confidence 589999999999999999999874 2234433211 2456799999975 222222 0 0000
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHH-----HHhCCCeEEEeC--CCCCCCHH
Q psy2520 91 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE-----LLTDPALLLCDE--PTTGLDSF 163 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~a-----L~~~p~llllDE--PtsgLD~~ 163 (290)
+.-.+..+++ +..||||||||++||++ |+.+|+++|||| ||++||+.
T Consensus 64 ------------------~~~~~~~~~~--------~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~ 117 (178)
T 1ye8_A 64 ------------------FTSKKLVGSY--------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKK 117 (178)
T ss_dssp ------------------CCCSSEETTE--------EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHH
T ss_pred ------------------CCcccccccc--------ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHH
Confidence 0000234444 34599999999999996 999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeC---CCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIH---QPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH---~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
.+..+.+.+.+ .+.|+|+++| +. ..+..++++ .+|+++.
T Consensus 118 ~~~~l~~~l~~----~~~~~i~~~H~~h~~-~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 118 FRDLVRQIMHD----PNVNVVATIPIRDVH-PLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHHHHTC----TTSEEEEECCSSCCS-HHHHHHHTC----TTCEEEE
T ss_pred HHHHHHHHHhc----CCCeEEEEEccCCCc-hHHHHHHhc----CCcEEEE
Confidence 99998888754 4677888885 64 578888987 4556554
No 74
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.92 E-value=2.6e-27 Score=221.28 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=136.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cc--cccEEEEccCCC-CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KF--RSACGFMYQHDL-FS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~--~~~ig~v~Q~~~-~~ 72 (290)
..+||.+++|++++|+||||||||||++.|+|+++|. +|+|.++|.++.. .+ +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 3688899999999999999999999999999999884 7999999998743 12 346999999987 88
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC--e
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--L 150 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--l 150 (290)
|.+|+++++.++...... ..+++.+|+.+..++.+ .+|| |||++|||+|+.+|+ +
T Consensus 225 p~~tv~e~l~~~~~~~~d------------~~lldt~Gl~~~~~~~~--------~eLS---kqr~~iaral~~~P~e~l 281 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGYD------------VVLCDTSGRLHTNYSLM--------EELI---ACKKAVGKIVSGAPNEIL 281 (359)
T ss_dssp HHHHHHHHHHHHHHTTCS------------EEEEECCCCSSCCHHHH--------HHHH---HHHHHHHHHSTTCCSEEE
T ss_pred hhhhHHHHHHHHHhCCCH------------HHHHHhcCCChhhhhHH--------HHHH---HHHHHHHHHHhcCCCceE
Confidence 889999999886431110 12456678877666663 4499 999999999999999 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC--------cHHHHhhcCeEEEEeCCeE
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP--------SSELIDMFDKIILLADSRT 209 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~--------~~~~~~~~d~v~~l~~G~i 209 (290)
|+|| ||+|||+..+. +.+.+..|.|+|++||.- ...+......|.++..|+.
T Consensus 282 LvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 282 LVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp EEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9999 99999998653 344334589999999931 1234556788999998875
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.91 E-value=2.2e-27 Score=214.02 Aligned_cols=146 Identities=17% Similarity=0.171 Sum_probs=95.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHHHHHHhcCchhh
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRV 93 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~ 93 (290)
.++|+||||||||||+|+|+|+..|. +|+|.++|+++.. ..++.++|++|++.+++.+||.||+.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-NC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-TC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-HH
Confidence 47999999999999999999999984 7999999998754 3457899999999999999999999886533211 10
Q ss_pred hHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2520 94 KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173 (290)
Q Consensus 94 ~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~ 173 (290)
. +.+.+++. ....+.. +.+||||||||+++|||++. ++++|||++|||+.. .++++
T Consensus 80 ~-----~~i~~~~~----~~~~~~~--------~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~ 135 (270)
T 3sop_A 80 W-----EPIEKYIN----EQYEKFL--------KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMK 135 (270)
T ss_dssp S-----HHHHHHHH----HHHHHHH--------HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHH
T ss_pred H-----HHHHHHHH----HHHHhhh--------HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHH
Confidence 0 11222222 1222333 23499999999999999876 999999999999987 55666
Q ss_pred HHHhcCCcEEEEEeCCC
Q psy2520 174 ELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 174 ~l~~~~g~tii~~tH~~ 190 (290)
.+ ++. .+||++.|..
T Consensus 136 ~L-~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 136 HL-SKV-VNIIPVIAKA 150 (270)
T ss_dssp HH-HTT-SEEEEEETTG
T ss_pred HH-Hhc-CcEEEEEecc
Confidence 77 344 7899998874
No 76
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.91 E-value=3.8e-29 Score=218.39 Aligned_cols=150 Identities=12% Similarity=0.071 Sum_probs=99.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCH-
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTV- 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv- 77 (290)
.||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++.. ..+..++|+||++.+|+.++.
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4899999999999999999999999999999987 5 88999 776532 235679999998665543321
Q ss_pred HHHHHHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHH-----HHHHHhCCCeE
Q psy2520 78 YEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSF-----ATELLTDPALL 151 (290)
Q Consensus 78 ~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~i-----a~aL~~~p~ll 151 (290)
.+++.+. ..... ..... ..++++++...+. ..+. .|||||+||++| +++|+..|+++
T Consensus 87 ~~~l~~~-~~~~~~~g~~~----~~i~~~l~~~~~~-il~~-----------~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 87 EDFLEYD-NYANNFYGTLK----SEYDKAKEQNKIC-LFEM-----------NINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp TCEEEEE-EETTEEEEEEH----HHHHHHHHTTCEE-EEEE-----------CHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred cchhhhh-hcccccCCCcH----HHHHHHHhCCCcE-EEEe-----------cHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 1111100 00000 00111 2245556543321 1121 389999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTS 177 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~ 177 (290)
+|||||+++|..+...+.+.|.....
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998887643
No 77
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.90 E-value=1.5e-23 Score=195.97 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCChHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcC
Q psy2520 129 VLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 199 (290)
Q Consensus 129 ~LSgGqrqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d 199 (290)
.||||||||++||++|+ .+|+||||||||++||+..+..+++.|.++ . .|+|++||. . . .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~-~---qt~i~~th~-~-~---~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV-P---QAIVTGTEL-A-P---GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS-S---EEEEEESSC-C-T---TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc-C---cEEEEEEec-c-c---cCC
Confidence 59999999999999999 899999999999999999999999999887 2 699999994 3 3 899
Q ss_pred eEEEEeCCeEEEEcCHHHH
Q psy2520 200 KIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 200 ~v~~l~~G~i~~~g~~~~~ 218 (290)
++++|++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999988754
No 78
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.90 E-value=2.8e-23 Score=192.63 Aligned_cols=76 Identities=37% Similarity=0.493 Sum_probs=67.1
Q ss_pred CCCCChHHHH------HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCe
Q psy2520 127 KVVLSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 200 (290)
Q Consensus 127 ~~~LSgGqrq------Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~ 200 (290)
+..||||||| |+++|++|+.+|++|||||||++||+..+..++++|+++. ..|.|||++||++ ++...||+
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL-KKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTG-GGSSEEEEEESCG--GGGGGCSE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEEChH--HHHHhCCE
Confidence 4569999999 5677778888999999999999999999999999999984 4588999999995 46789999
Q ss_pred EEEEe
Q psy2520 201 IILLA 205 (290)
Q Consensus 201 v~~l~ 205 (290)
+++|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 79
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=6.3e-24 Score=218.37 Aligned_cols=163 Identities=28% Similarity=0.412 Sum_probs=124.6
Q ss_pred HHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCchh--h---hHHHHHHHH
Q psy2520 28 TLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR--V---KAYQRIALI 102 (290)
Q Consensus 28 TLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~--~---~~~~~~~~~ 102 (290)
|...|..+++.|. .|+|.|+|+++.. +..++|.+++.|......... . .........
T Consensus 383 ~C~~C~g~rl~~~---~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (916)
T 3pih_A 383 TCSVCGGRRLNRE---ALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKR 444 (916)
T ss_dssp ECTTTCSCCBCTT---GGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHH
T ss_pred cchhcccccCChH---hcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHH
Confidence 3445566677774 7999999998632 234577777776443221110 0 001112334
Q ss_pred HHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q psy2520 103 NSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLLCDEPTTGLDSFSASKLIRMMRELTSQR 179 (290)
Q Consensus 103 ~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 179 (290)
.+++..+||... .++.+ .+|||||||||+|||||+.+|+ +|||||||+|||+.....++++|+++ ++.
T Consensus 445 ~~~L~~vgL~~l~l~r~~--------~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L-~~~ 515 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSA--------TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL-RDL 515 (916)
T ss_dssp HHHHHTTTCTTCBTTSBG--------GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT-TTT
T ss_pred HHHHHHcCCccccccCCc--------ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH-Hhc
Confidence 567888999765 57774 4599999999999999999887 99999999999999999999999999 556
Q ss_pred CcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHHH
Q psy2520 180 KKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 219 (290)
Q Consensus 180 g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 219 (290)
|.|||+||||+ +. ...||+|++| ++|++++.|++++++
T Consensus 516 G~TvivVtHd~-~~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 516 GNTVIVVEHDE-EV-IRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp TCEEEEECCCH-HH-HHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred CCEEEEEeCCH-HH-HHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 99999999996 34 4569999999 899999999999875
No 80
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.90 E-value=6.2e-28 Score=220.83 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=113.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHH-HHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYE-HLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e-~l~ 82 (290)
.++||.+++|++++|+||||||||||+++|+|++ +|+|. +|++|++.++.. |+++ |+.
T Consensus 117 ~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~--------------~~v~q~~~lf~~-ti~~~ni~ 175 (305)
T 2v9p_A 117 KLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL--------------SFANHKSHFWLA-SLADTRAA 175 (305)
T ss_dssp HHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE--------------CGGGTTSGGGGG-GGTTCSCE
T ss_pred ccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE--------------EEecCccccccc-cHHHHhhc
Confidence 3688999999999999999999999999999997 38883 467787776653 7776 766
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
|... ... .+.+.++.+ |.+..+ + ..|||||||| ||||+.+|+||| |++||+
T Consensus 176 ~~~~------~~~-----~~~~~i~~~-L~~gld---g-------~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 176 LVDD------ATH-----ACWRYFDTY-LRNALD---G-------YPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp EEEE------ECH-----HHHHHHHHT-TTGGGG---T-------CCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred cCcc------ccH-----HHHHHHHHH-hHccCC---c-------cCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 5310 111 233455543 433333 1 3499999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 223 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 223 (290)
.+...+.. .+|++. ....||+| +|++|++++.|+++++...+.
T Consensus 227 ~~~~~i~~---------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~ 269 (305)
T 2v9p_A 227 QAEDRYLY---------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFV 269 (305)
T ss_dssp TTCGGGGG---------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHH
T ss_pred HHHHHHHH---------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHH
Confidence 99888752 188864 45789999 999999999999998744443
No 81
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.90 E-value=3e-26 Score=219.54 Aligned_cols=172 Identities=16% Similarity=0.083 Sum_probs=136.0
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE---ecCc---------cccccEEEEccC-CCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK---PVEG---------KFRSACGFMYQH-DLF 71 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~---~~~~---------~~~~~ig~v~Q~-~~~ 71 (290)
++ |.+.+|++++|+|||||||||||++|+|+.+|+ +|.|.++|+ ++.. .+++.++|++|+ ..+
T Consensus 150 ~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~ 225 (438)
T 2dpy_A 150 AL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSP 225 (438)
T ss_dssp HH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCH
T ss_pred ee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCH
Confidence 56 889999999999999999999999999999884 899999998 4432 245779999995 566
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
++.+||.+|+.+.+...... .+ ......+. +..||+|| |||+|| +.+|++
T Consensus 226 ~~~~~v~~~~~~~ae~~~~~-------~~---------~v~~~ld~---------l~~lS~g~-qrvslA---l~~p~~- 275 (438)
T 2dpy_A 226 LLRMQGAAYATRIAEDFRDR-------GQ---------HVLLIMDS---------LTRYAMAQ-REIALA---IGEPPA- 275 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-------TC---------EEEEEEEC---------HHHHHHHH-HHHHHH---TTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhC-------CC---------CHHHHHHh---------HHHHHHHH-HHHHHH---hCCCcc-
Confidence 77889999988865431100 00 00011111 23399999 999999 888888
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh---cCCc-----EEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTS---QRKK-----TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~---~~g~-----tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|+|||+.....+.+++.++.+ +.|. ||+++|||+. ..+||++++|.+|+++..+++.++
T Consensus 276 -----t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 276 -----TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp -----SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred -----cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 999999999999999999844 2375 9999999984 578999999999999999887754
No 82
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.89 E-value=1.2e-24 Score=197.47 Aligned_cols=180 Identities=13% Similarity=0.070 Sum_probs=117.2
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc-EEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG-DIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G-~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
++++.+.+|++++|+||||||||||++.|+|...+. +| .|.+.+.+... .+++++.+++++.. +++.+++.
T Consensus 27 ~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~l~ 99 (296)
T 1cr0_A 27 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDSLK 99 (296)
T ss_dssp HHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHHHH
T ss_pred HHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccccc
Confidence 567889999999999999999999999999998873 47 67554433322 23333444444321 12334443
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHH-HHHHHHHHHHHhCCCeEEEeCCCC---
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE-RKRLSFATELLTDPALLLCDEPTT--- 158 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGq-rqRv~ia~aL~~~p~llllDEPts--- 158 (290)
... + ...+..+.+.++++..++. .... +..+|.+| +||+. |+++..+|+++|+||||+
T Consensus 100 ~~~-~------~~~~~~~~~~~~l~~~~l~--i~~~--------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 100 REI-I------ENGKFDQWFDELFGNDTFH--LYDS--------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHH-H------HHTHHHHHHHHHHSSSCEE--EECC--------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred cCC-C------CHHHHHHHHHHHhccCCEE--EECC--------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 321 1 1111222334444322221 1111 23489998 66776 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhcCCcEEEEEeCCCc-H--------------------HHHhhcCeEEEEeCCeE
Q psy2520 159 G---LDS-FSASKLIRMMRELTSQRKKTVLCTIHQPS-S--------------------ELIDMFDKIILLADSRT 209 (290)
Q Consensus 159 g---LD~-~~~~~i~~~l~~l~~~~g~tii~~tH~~~-~--------------------~~~~~~d~v~~l~~G~i 209 (290)
+ +|+ .....+++.|++++++.|+|||+++|+.. . .+..+||+|++|++|+.
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 67788999999997666999999999951 2 57789999999998874
No 83
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.89 E-value=6.8e-23 Score=200.11 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=69.9
Q ss_pred CCCC-ChHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 127 KVVL-SGGERKRLSFATELLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 127 ~~~L-SgGqrqRv~ia~aL~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ + |.|||+|||++ . +...||++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~-~-~~~vi~itH~~-~-~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLA-Q-IAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHH-H-HSEEEEECCCH-H-HHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHh-C-CCEEEEEecCH-H-HHHhCCEEEE
Confidence 4567 999999999999999999 9999999999999999999999999994 4 79999999996 3 5568999999
Q ss_pred EeCC
Q psy2520 204 LADS 207 (290)
Q Consensus 204 l~~G 207 (290)
|.++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 84
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.89 E-value=1.1e-24 Score=201.69 Aligned_cols=128 Identities=17% Similarity=0.272 Sum_probs=103.2
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
++|+.+++|++++|+||||||||||+++|+|+++|+ +|.|.++|.+... ..++.+++++
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~---------------- 223 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF---------------- 223 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC----------------
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe----------------
Confidence 578889999999999999999999999999999984 7999999864211 0222233322
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+ |||+||++||+||..+|++||+||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 0 689999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
.++++.|+.+ ...+.|+|+++|+++ +...+||+++|.+|..
T Consensus 252 ---~e~~~~l~~~-~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 ---SEAYDFYNVL-CSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp ---THHHHHHHHH-HTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred ---HHHHHHHHHH-hcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456778887 343458999999974 6789999999998863
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.88 E-value=1.9e-23 Score=204.44 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=118.9
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
++.+.+|++++|+||||||||||+++++|..++ .|+ +.+.|++|++. .++.+++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~-------------~vi~~~~ee~~----~~l~~~~~---~ 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE-------------RAILFAYEESR----AQLLRNAY---S 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC-------------CEEEEESSSCH----HHHHHHHH---T
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC-------------CEEEEEEeCCH----HHHHHHHH---H
Confidence 457899999999999999999999999998876 243 12456676531 12222221 1
Q ss_pred hcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH---
Q psy2520 87 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF--- 163 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~--- 163 (290)
+.. . +.+ +...|+....+.. +..|||||+||+++|+++..+|++||+| ||++||+.
T Consensus 331 ~g~----~-------~~~-~~~~g~~~~~~~~--------p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~ 389 (525)
T 1tf7_A 331 WGM----D-------FEE-MERQNLLKIVCAY--------PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSN 389 (525)
T ss_dssp TSC----C-------HHH-HHHTTSEEECCCC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCH
T ss_pred cCC----C-------HHH-HHhCCCEEEEEec--------cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCCh
Confidence 111 1 112 2245666666666 4459999999999999999999999999 99999999
Q ss_pred --HHHHHHHHHHHHHhcCCcEEEEEeCCCc---------HHHHhhcCeEEEEeCCe
Q psy2520 164 --SASKLIRMMRELTSQRKKTVLCTIHQPS---------SELIDMFDKIILLADSR 208 (290)
Q Consensus 164 --~~~~i~~~l~~l~~~~g~tii~~tH~~~---------~~~~~~~d~v~~l~~G~ 208 (290)
.+..+.++++.+ ++.|.|||+++|+.. ..+..+||+|++|.+|+
T Consensus 390 ~~~~~~i~~ll~~l-~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 390 NAFRQFVIGVTGYA-KQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHH-HHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHH-HhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999999998 456999999999971 35677899999999886
No 86
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.87 E-value=9.7e-25 Score=200.56 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=97.2
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 89 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~ 89 (290)
+++|+++||+||||||||||+++|+|+++|. .|. +.++||+|++.+++. |+.||+.+... +.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~g 148 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHR-KG 148 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTC-TT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC-------------CeEEEEecCccCCcc-cHHHHHHHHHh-cC
Confidence 7899999999999999999999999999883 342 459999999888887 99999865321 11
Q ss_pred chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 90 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
.. .....+.+.++++.++ ....+..+ ..|||||+||+++|++++.+|+|||||||+..+|+
T Consensus 149 ~~---~~~d~~~~~~~L~~l~-~~~~~~~~--------~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 149 FP---ESYNRRALMRFVTSVK-SGSDYACA--------PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp SG---GGBCHHHHHHHHHHHH-TTCSCEEE--------EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CC---hHHHHHHHHHHHHHhC-CCcccCCc--------ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11 1112244567788777 44455553 34999999999999999999999999999999986
No 87
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.87 E-value=5.4e-24 Score=186.90 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=105.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHH--cCCCCCCCCccEEEECCEecCcc---ccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALS--QRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~--G~~~~~~~~~G~I~i~G~~~~~~---~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
+-+++|++++|+||||||||||+++|+ |+.++. .|.+++++...... ..+.+||++|+....+.+++.++..
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVS 101 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccc
Confidence 368999999999999999999999999 663442 57777777654321 2345777777644444444444322
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC-
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD- 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD- 161 (290)
...... . ... ... ....+.++......+..-..+|+++++||||++||
T Consensus 102 ~~~~~~------~-------~~~----------~~~--------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~ 150 (251)
T 2ehv_A 102 SVVGLP------S-------EEK----------FVL--------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred cccccc------c-------ccc----------eec--------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhh
Confidence 211000 0 000 000 01134455555555555568999999999999997
Q ss_pred ----HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHH---------Hhhc-CeEEEEe
Q psy2520 162 ----SFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL---------IDMF-DKIILLA 205 (290)
Q Consensus 162 ----~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~---------~~~~-d~v~~l~ 205 (290)
+..+..+.++++.+ ++.|+|||++||++. ++ ..+| |++++|+
T Consensus 151 ~~d~~~~~~~l~~l~~~l-~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 151 LEEERKIREVLLKLNTIL-LEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp SSSGGGHHHHHHHHHHHH-HHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHH-HHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 66677799999998 455999999999974 55 5788 9999995
No 88
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.87 E-value=1.3e-21 Score=200.66 Aligned_cols=135 Identities=23% Similarity=0.354 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHHhcCchhhh------HHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHH
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVK------AYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELL 145 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~ 145 (290)
..+||.|++.|...+..+.... ..+..+++ ++|..+||... .++.++ +|||||+|||+||++|+
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~--------tLSGGEkQRV~LA~aL~ 520 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG--------TLSGGEAQRIRLATQIG 520 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG--------GCCHHHHHHHHHHHHHT
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc--------cCCHHHHHHHHHHHHHh
Confidence 3589999999976554332100 01223334 46899999865 688844 49999999999999999
Q ss_pred hCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHH
Q psy2520 146 TDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDA 217 (290)
Q Consensus 146 ~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~ 217 (290)
.+| ++|||||||+|||+.....++++|+++ ++.|.|||+|+|++ ++ ...||+|++| .+|++++.|++++
T Consensus 521 ~~~~~~llILDEPTagLdp~~~~~L~~~L~~L-r~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e 597 (972)
T 2r6f_A 521 SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM-RDLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEE 597 (972)
T ss_dssp TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH-HTTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred hCCCCCEEEEeCcccCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHH
Confidence 985 999999999999999999999999999 56799999999996 44 4679999999 7999999999887
Q ss_pred HH
Q psy2520 218 AL 219 (290)
Q Consensus 218 ~~ 219 (290)
+.
T Consensus 598 ~~ 599 (972)
T 2r6f_A 598 VM 599 (972)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.86 E-value=1.6e-23 Score=185.35 Aligned_cols=173 Identities=14% Similarity=0.120 Sum_probs=111.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+.+++.+
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~------~~~~~i~~v~~d~-~~~~l~~~~~~~~ 81 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE------QRQRKVVILSQDR-FYKVLTAEQKAKA 81 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC------GGGCSEEEEEGGG-GBCCCCHHHHHHH
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc------ccCCceEEEeCCc-CccccCHhHhhhh
Confidence 4799999999999999999999999999999965 333343 2467799999985 7788999999877
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
......... ......+.+.+.++.+ .+..+.. +..||+||+||+++ ++++.+|+++|+|||....+..
T Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~--------~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 82 LKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE--------VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp HTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE--------ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred hccCCCCCC-cccccHHHHHHHHHHH--HCCCCee--------cccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 543221110 0001112234444443 3344555 34599999999988 5888899999999998888763
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh-hcCeEEEEeCCeEEEEcCHHHHHHHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSRTAFIGSKDAALAFL 222 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~ 222 (290)
+.++ .+.+|++++|+. ..+.+ +++++ .+|+ +.+++...+
T Consensus 150 --------l~~~---~~~~i~v~th~~-~~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 150 --------IRDM---FHLRLFVDTDSD-VRLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp --------HHTT---CSEEEEEECCHH-HHHHHHHHHHT---C--------CHHHHHHHH
T ss_pred --------HHHh---cCeEEEEECCHH-HHHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 2222 378999999973 34444 34444 6664 566665433
No 90
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.86 E-value=1.1e-23 Score=182.58 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=98.6
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC----CCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC----IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~----~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
+-+++|++++|+||||||||||+++|+|...+.. ...|.|++++++.. ..+.+++++|...+++. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--CHHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--CHHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 3588999999999999999999999999554310 01346666664321 11234455554433332 33333322
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHH-HHHHHHHHHHHh-------CCCeEEEeC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE-RKRLSFATELLT-------DPALLLCDE 155 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGq-rqRv~ia~aL~~-------~p~llllDE 155 (290)
.. ..+.++ ++.+..+++++. +|+++++||
T Consensus 97 ~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe 133 (231)
T 4a74_A 97 AR-------------------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 133 (231)
T ss_dssp EE-------------------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEET
T ss_pred Ee-------------------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECC
Confidence 10 023332 233455555554 999999999
Q ss_pred CCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEeCCCc---HHHHhhcCeEEEEeCCe
Q psy2520 156 PTTGLDSFS------------ASKLIRMMRELTSQRKKTVLCTIHQPS---SELIDMFDKIILLADSR 208 (290)
Q Consensus 156 PtsgLD~~~------------~~~i~~~l~~l~~~~g~tii~~tH~~~---~~~~~~~d~v~~l~~G~ 208 (290)
||+++|+.. ..++++.|++++++.|.|||++||... ..+...+|++++|++|+
T Consensus 134 ~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 134 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp SSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999999842 237888888886666999999999542 23778899999998763
No 91
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=5.2e-22 Score=202.61 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=124.9
Q ss_pred CCChHHHHHHHHHcCCCCCC------CCccEEEECCEecCc----cccccEEEEccC---CCCCC----CCCH-HHHHHH
Q psy2520 22 SGAGKSTLLAALSQRLPDDC------IIDGDIRVNGKPVEG----KFRSACGFMYQH---DLFSP----SLTV-YEHLYF 83 (290)
Q Consensus 22 nGaGKSTLl~~l~G~~~~~~------~~~G~I~i~G~~~~~----~~~~~ig~v~Q~---~~~~~----~lTv-~e~l~~ 83 (290)
+..||++|.+.+....-|.. ..+|+|.++|+++.. .....++++.|. +.... .++. ...+.+
T Consensus 271 ~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 350 (842)
T 2vf7_A 271 SASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRPEQAIALQ 350 (842)
T ss_dssp CHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCSSHHHHHH
T ss_pred CHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcchhhHHHHH
Confidence 45689999998876433311 136889999988754 122223333221 11000 0000 011111
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC--CeEEEeCCCCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDP--ALLLCDEPTTGL 160 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p--~llllDEPtsgL 160 (290)
.. ..+...++. .+..+||... .++.+ .+|||||||||+||++|+.+| .+|||||||++|
T Consensus 351 ~i---------~~ei~~rl~-~L~~vGL~~l~l~r~~--------~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~L 412 (842)
T 2vf7_A 351 RM---------AADLVKRLD-VLLHLGLGYLGLDRST--------PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGL 412 (842)
T ss_dssp HH---------HHHHHHHHH-HHHHTTCTTSBTTCBG--------GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTC
T ss_pred HH---------HHHHHHHHH-HHHhCCCCcCCccCCc--------CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccC
Confidence 00 112233344 6889999865 68874 459999999999999999999 599999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 219 (290)
|+.....++++|+++ ++.|.|||+|+|++ + +...||+|++| .+|++++.|+++++.
T Consensus 413 d~~~~~~L~~~l~~L-~~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 413 HPADTEALLSALENL-KRGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp CGGGHHHHHHHHHHH-HTTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred CHHHHHHHHHHHHHH-HHcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999999999999999 56799999999996 3 56789999999 799999999988754
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.86 E-value=1.9e-25 Score=218.51 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=111.2
Q ss_pred cceEE-EEeCCeEEEEECCCCChHHHHHHH--HHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTG-AALSGTLVAIMGASGAGKSTLLAA--LSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~-~~~~Ge~~~IiGpnGaGKSTLl~~--l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv 77 (290)
++||| .+.+|++++|+||||||||||+++ ++|+.+|+ +|.|+++|++... ..++.+||++|++...++
T Consensus 29 d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~--- 102 (525)
T 1tf7_A 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK--- 102 (525)
T ss_dssp HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS---
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc---
Confidence 36788 999999999999999999999999 78998874 7999999987532 234678999997432111
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH-hCCCeEEEeCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-TDPALLLCDEP 156 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~-~~p~llllDEP 156 (290)
+.+ ...... . ...++++. +.-++ +.-.++.+|. .+|++++||||
T Consensus 103 ---l~~---~~~~~~-~------~~~~~l~~---------------------~~l~~-~~~~~~~~LS~g~~~~lilDe~ 147 (525)
T 1tf7_A 103 ---LFI---LDASPD-P------EGQEVVGG---------------------FDLSA-LIERINYAIQKYRARRVSIDSV 147 (525)
T ss_dssp ---EEE---EECCCC-S------SCCSCCSS---------------------HHHHH-HHHHHHHHHHHHTCSEEEEECS
T ss_pred ---EEE---EecCcc-c------chhhhhcc---------------------cCHHH-HHHHHHHHHHHcCCCEEEECCH
Confidence 100 000000 0 00011111 22222 2233333332 46889999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHH--------HHhhcCeEEEEeC
Q psy2520 157 TT-----GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE--------LIDMFDKIILLAD 206 (290)
Q Consensus 157 ts-----gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~--------~~~~~d~v~~l~~ 206 (290)
|+ +||+..+..++++++.+++ .|+|||++||++... +..+||+|++|++
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999954 699999999998521 3456999999988
No 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.86 E-value=6.4e-23 Score=211.55 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=106.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHH--------HcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAAL--------SQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l--------~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||.+.+|++++|+||||||||||||++ .|...|. ++.. ++.+. .++
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~~--------------~~~~d---~i~--- 709 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESAE--------------VSIVD---CIL--- 709 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEEE--------------EECCS---EEE---
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---cccc--------------chHHH---HHH---
Confidence 379999999999999999999999999999 4544431 1110 11100 000
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH--HhCCCeEEE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL--LTDPALLLC 153 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL--~~~p~llll 153 (290)
..+|+.+.. ...+|+|+++++.+|+++ +.+|+++||
T Consensus 710 -------------------------------~~ig~~d~l-----------~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 710 -------------------------------ARVGAGDSQ-----------LKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp -------------------------------EECC--------------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred -------------------------------HhcCchhhH-----------HHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 011111111 123888888888888888 899999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 154 DEPTTGLDSFSASKL-IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 154 DEPtsgLD~~~~~~i-~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
||||+|+|+.....+ +.++..++++.|.++|++||+. ++..++|++..+.+|++.+.++.++
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCc
Confidence 999999999999888 7777888544689999999995 4678999999999999887665543
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.85 E-value=2.1e-21 Score=199.69 Aligned_cols=137 Identities=25% Similarity=0.364 Sum_probs=109.2
Q ss_pred CCCCCHHHHHHHHHHhcCchhhh------HHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHH
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVK------AYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATEL 144 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL 144 (290)
+..+||.|.+.|...+....... ..+..+++ +.|..+||... .++.+ .+|||||||||+||++|
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~--------~tLSGGEkQRV~LA~aL 536 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA--------ATLSGGEAQRIRLATQI 536 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG--------GGCCHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc--------ccCCHHHHHHHHHHHHH
Confidence 45579999999854443322100 01222333 45888999765 68874 44999999999999999
Q ss_pred HhC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHH
Q psy2520 145 LTD--PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKD 216 (290)
Q Consensus 145 ~~~--p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~ 216 (290)
+.+ |++|||||||++||+.....++++|+++ ++.|.|||+|+|++ ++ ...||+|++| .+|++++.|+++
T Consensus 537 ~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L-r~~G~TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~ 613 (993)
T 2ygr_A 537 GSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRL-RDLGNTLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYD 613 (993)
T ss_dssp TTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHH-HHTTCEEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHH
T ss_pred hhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHH-HHcCCEEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHH
Confidence 999 5999999999999999999999999999 55699999999996 44 5689999999 799999999999
Q ss_pred HHHH
Q psy2520 217 AALA 220 (290)
Q Consensus 217 ~~~~ 220 (290)
++..
T Consensus 614 e~~~ 617 (993)
T 2ygr_A 614 ELLR 617 (993)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8753
No 95
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.85 E-value=6.4e-23 Score=213.68 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=110.2
Q ss_pred cceEEEEeC-------CeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEE-EEccCCCCCCCC
Q psy2520 4 LELTGAALS-------GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACG-FMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~-------Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig-~v~Q~~~~~~~l 75 (290)
.|++|.+.+ |++++|+||||||||||||++ |++.+ ..++| ||||+.. .+
T Consensus 773 ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~---~l 829 (1022)
T 2o8b_B 773 NDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC---RL 829 (1022)
T ss_dssp EEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE---EE
T ss_pred eeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC---CC
Confidence 367888877 899999999999999999999 98753 12355 8999752 34
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||.+++.. .+|+.+..... ...+|+++++ +++|++++.+|+++||||
T Consensus 830 ~v~d~I~~------------------------rig~~d~~~~~--------~stf~~em~~-~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 830 TPIDRVFT------------------------RLGASDRIMSG--------ESTFFVELSE-TASILMHATAHSLVLVDE 876 (1022)
T ss_dssp CCCSBEEE------------------------ECC-----------------CHHHHHHHH-HHHHHHHCCTTCEEEEEC
T ss_pred CHHHHHHH------------------------HcCCHHHHhhc--------hhhhHHHHHH-HHHHHHhCCCCcEEEEEC
Confidence 55554421 11221111111 2337887775 999999999999999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE--EEcCHH
Q psy2520 156 PTTGLDSFSA-SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA--FIGSKD 216 (290)
Q Consensus 156 PtsgLD~~~~-~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~--~~g~~~ 216 (290)
|++|+|+... ..++.+|+.++++.|.++|++||++ ..+..++|++.++ +|++. ..|+++
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEEC------
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEEEEecCcc
Confidence 9999999985 5578999998544489999999996 4677789999887 58887 455554
No 96
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.85 E-value=5.8e-23 Score=188.08 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=109.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cc--cccEEEEccCCCCCCCCCHHHHH
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KF--RSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~--~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
+|++++|+||||||||||+++|+|+++|. +|+|.+.|.++.. .+ +..++|++|++.++|.++|++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999984 7999999998743 12 34699999998888888999998
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.++...... ..+++..|+.+..+.. ++..++||++|||+++.+|+.++| .||
T Consensus 178 ~~~~~~~~d------------~~llDt~G~~~~~~~~-----------~~eLs~~r~~iaRal~~~P~~~lL-----vLD 229 (304)
T 1rj9_A 178 QAMKARGYD------------LLFVDTAGRLHTKHNL-----------MEELKKVKRAIAKADPEEPKEVWL-----VLD 229 (304)
T ss_dssp HHHHHHTCS------------EEEECCCCCCTTCHHH-----------HHHHHHHHHHHHHHCTTCCSEEEE-----EEE
T ss_pred HHHHhCCCC------------EEEecCCCCCCchHHH-----------HHHHHHHHHHHHHhhcCCCCeEEE-----EEc
Confidence 865321100 0123334444333333 556669999999999999994444 455
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
+.+...+++.++.+.+..|.|+|++||+.
T Consensus 230 a~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 230 AVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp TTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 55555667777777444589999999973
No 97
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.84 E-value=4.1e-23 Score=192.28 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=122.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----------cccccEEEEccCCCCCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----------KFRSACGFMYQHDLFSP 73 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----------~~~~~ig~v~Q~~~~~~ 73 (290)
++ |.+.+|++++|+||||||||||+++|+|+.+|+ .|.|.+.|++... .+++.+.+++|.+.
T Consensus 64 ~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~--- 136 (347)
T 2obl_A 64 GL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR--- 136 (347)
T ss_dssp HH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS---
T ss_pred ee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC---
Confidence 45 889999999999999999999999999999984 7999999976311 13345788887432
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCcc--CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ--HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
...+.+...... ..+.+.+...+ .+.. -.. +..||+|| |||++| +.+|++
T Consensus 137 --~~~~r~~~~~~~------------~~~ae~~~~~~-~~vl~~ld~--------~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 137 --PALERMKAAFTA------------TTIAEYFRDQG-KNVLLMMDS--------VTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp --CHHHHHHHHHHH------------HHHHHHHHTTT-CEEEEEEET--------HHHHHHHH-HHHHHH---TTCCCC-
T ss_pred --CHHHHHHHHHHH------------HHHHHHHHhcc-ccHHHHHhh--------HHHHHHHH-HHHHHH---cCCCCc-
Confidence 233322211100 00111111111 0000 012 34499999 899999 688877
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTS-QRKK-----TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~-~~g~-----tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|+|||+.....+.+++.++.+ +.|. ||+++|||+. ..+||++++|.+|+++.++++.+.
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999999999999999844 4587 9999999985 578999999999999999877653
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.84 E-value=3.1e-22 Score=179.43 Aligned_cols=129 Identities=22% Similarity=0.331 Sum_probs=93.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 84 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~ 84 (290)
++| +++|++++|+||||||||||+++|+|+++|. .+|+|.++|.++. |++|+...+
T Consensus 19 ~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~--------~~~~~~~~~------------ 74 (261)
T 2eyu_A 19 ELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE--------YVFKHKKSI------------ 74 (261)
T ss_dssp HGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC--------SCCCCSSSE------------
T ss_pred HHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce--------eecCCccee------------
Confidence 455 8999999999999999999999999999873 1699999887643 333321100
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
. .. ..+++.. ..| |++||++|+.+|+++++|||| |+.+
T Consensus 75 --v---~q--------------~~~gl~~--------------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 --V---NQ--------------REVGEDT--------------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp --E---EE--------------EEBTTTB--------------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred --e---eH--------------HHhCCCH--------------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 0 00 0122211 113 899999999999999999999 9888
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
...++ +.. . .|.+|++++|+.. +...+||+++|..
T Consensus 113 ~~~~l---~~~-~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETAL---RAA-E-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HHH-H-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HHH-c-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 65543 333 3 4899999999963 5788999887754
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.84 E-value=1.6e-24 Score=186.69 Aligned_cols=146 Identities=17% Similarity=0.158 Sum_probs=114.2
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCC--CCCCHHHHHHHHHHh
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS--PSLTVYEHLYFMALL 87 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~--~~lTv~e~l~~~~~~ 87 (290)
.++|++++|+||||||||||+++|+|++.| .++|++|++.++ ..+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNYD- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT-
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCCC-
Confidence 578999999999999999999999998643 489999988766 56799888665321
Q ss_pred cCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHH----HHHHHHHHHHHhCCCeEEEeCCCCC----
Q psy2520 88 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE----RKRLSFATELLTDPALLLCDEPTTG---- 159 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGq----rqRv~ia~aL~~~p~llllDEPtsg---- 159 (290)
.+.... .+.+.++++.+++.+..+.+ +..+|+|| +||+++|++++.+|.++++||||++
T Consensus 61 -~~~~~~----~~~~~~~l~~~~~~~~~~~~--------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~ 127 (211)
T 3asz_A 61 -HPDAFD----LALYLEHAQALLRGLPVEMP--------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDL 127 (211)
T ss_dssp -SGGGBC----HHHHHHHHHHHHTTCCEEEC--------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSE
T ss_pred -Chhhhh----HHHHHHHHHHHHcCCCcCCC--------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCE
Confidence 111111 23356677888887766665 34599996 4788999999999999999999999
Q ss_pred ---CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 160 ---LDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 160 ---LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
||+....++.+.+++...++|.|++.++|+.
T Consensus 128 ~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 128 KVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999886455689999999974
No 100
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.83 E-value=1.2e-20 Score=155.36 Aligned_cols=80 Identities=35% Similarity=0.462 Sum_probs=70.8
Q ss_pred CCCCChHHHHHHHHH------HHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCe
Q psy2520 127 KVVLSGGERKRLSFA------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 200 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia------~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~ 200 (290)
+..||||||||++|| |+|+.+|+++||||||+|||+.++..+.+.|+++. +.|.|||++||++ ++..+||+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL-KKIPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTG-GGSSEEEEEESCG--GGGGGCSE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHH-ccCCEEEEEEChH--HHHHhCCE
Confidence 456999999999886 89999999999999999999999999999999984 4489999999996 46789999
Q ss_pred EEEE--eCCeE
Q psy2520 201 IILL--ADSRT 209 (290)
Q Consensus 201 v~~l--~~G~i 209 (290)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
No 101
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.83 E-value=2.9e-20 Score=177.47 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=67.8
Q ss_pred CCCChHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 128 VVLSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++ ...+.++|++||+. .....||+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRH-RNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHH-CBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHH-hcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 359999999999999999 579999999999999999999999999998 44478999999984 46788999999
Q ss_pred Ee
Q psy2520 204 LA 205 (290)
Q Consensus 204 l~ 205 (290)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 102
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.82 E-value=1.6e-20 Score=193.37 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=95.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||.+++|++++|+||||||||||||+++++.... ..|. .+.. ....++++ +.++..+.+.++
T Consensus 664 ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa-~~~~i~~~---d~i~~~ig~~d~--- 728 (918)
T 3thx_B 664 NNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPA-EEATIGIV---DGIFTRMGAADN--- 728 (918)
T ss_dssp EEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSS-SEEEEECC---SEEEEEC--------
T ss_pred ccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccc-hhhhhhHH---HHHHHhCChHHH---
Confidence 3799999999999999999999999999998653210 0111 0000 00112211 111221122111
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
.... .+.+|+||+|++.|+++ +.+|+++||||||+|||+.
T Consensus 729 -------------------------------l~~~--------~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 729 -------------------------------IYKG--------RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred -------------------------------HHHh--------HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 1112 24499999999999999 8999999999999999999
Q ss_pred HHHHHH-HHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE
Q psy2520 164 SASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 201 (290)
Q Consensus 164 ~~~~i~-~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v 201 (290)
....+. .+++.++++.|.|+|++||++ ++..++|+.
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 999987 788887555689999999996 355677654
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.81 E-value=2.8e-22 Score=199.36 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=112.4
Q ss_pred EEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC-------ccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-------GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~-------~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
++|+|||||||||||++|+|+..|. .+|.|+++|.++. ..+++.+||+||+..+++.+||.+|+.+.....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998772 3799999999862 146778999999999999999999998754221
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC------CCCCCH
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP------TTGLDS 162 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP------tsgLD~ 162 (290)
... ..++ | ++++.++.+....|+++|+||| |+|||+
T Consensus 126 ~~~----------------~~~~-------------------s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~ 167 (608)
T 3szr_A 126 AGE----------------GMGI-------------------S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPA 167 (608)
T ss_dssp HCS----------------SSCC-------------------C---SCCEEEEEEESSSCCEEEEECCC------CCSSC
T ss_pred cCC----------------cccc-------------------c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCH
Confidence 000 0011 1 0112222233458999999999 999999
Q ss_pred HHHHHHHHHHHHHHh-cCCcEEEEEeCCCc------HHHHhhc-----CeEEEEeCCeEEEEcCHHHHHH
Q psy2520 163 FSASKLIRMMRELTS-QRKKTVLCTIHQPS------SELIDMF-----DKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~-~~g~tii~~tH~~~------~~~~~~~-----d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
..+.++.++++++.. ..+.++++++|+.. ..+.+.. ..|+++.++.++..|+.+++..
T Consensus 168 ~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 168 DIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp SHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 999999999999633 34788999999864 1122222 4578899998887777654433
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.80 E-value=4.6e-21 Score=194.44 Aligned_cols=127 Identities=24% Similarity=0.180 Sum_probs=95.6
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC-CCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP-DDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~-~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
|+||. |++++|+||||||||||||+|+|+.. +. .|.+. . ..+..+++++| +++.+++.||+.+
T Consensus 571 disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------p-a~~~~i~~v~~---i~~~~~~~d~l~~ 634 (765)
T 1ewq_A 571 DLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------P-AEEAHLPLFDG---IYTRIGASDDLAG 634 (765)
T ss_dssp EEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------S-SSEEEECCCSE---EEEECCC------
T ss_pred eccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------e-hhccceeeHHH---hhccCCHHHHHHh
Confidence 56666 99999999999999999999999864 32 46542 1 12345788776 4555666655321
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH--HhCCCeEEEeCC---CC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL--LTDPALLLCDEP---TT 158 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL--~~~p~llllDEP---ts 158 (290)
++|+|+++++.+|+++ +.+|+++||||| |+
T Consensus 635 ---------------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs 669 (765)
T 1ewq_A 635 ---------------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTS 669 (765)
T ss_dssp ---------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSC
T ss_pred ---------------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCC
Confidence 2899999999999999 999999999999 99
Q ss_pred CCCHHHH-HHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 159 GLDSFSA-SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 159 gLD~~~~-~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
+||+.+. ..+++.|.+ .|.|+|++||+. ++..++
T Consensus 670 ~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 670 SLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp HHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred CcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 9999876 467777765 378999999995 455555
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.80 E-value=2e-21 Score=181.12 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=102.2
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCC-CCccE-EEECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDC-IIDGD-IRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~-~~~G~-I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
++.+++|++++|+||||||||||++.+++.. +|+. ...|. |+|++++.. .++++++++|...+++. ++.+|+.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~v~~ni~ 201 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIY 201 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-HHGGGEE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-HHhhCEE
Confidence 4678999999999999999999999999987 5420 00267 888886641 23456777776544432 4444432
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH-------hCCCeEEEeC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-------TDPALLLCDE 155 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~-------~~p~llllDE 155 (290)
+... . -|.+++|++.++++++ .+|+++|+||
T Consensus 202 ~~~~-------------------------------~-----------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs 239 (349)
T 1pzn_A 202 VARA-------------------------------F-----------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 239 (349)
T ss_dssp EEEC-------------------------------C-----------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEET
T ss_pred EEec-------------------------------C-----------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeC
Confidence 2100 0 1345566666666665 6899999999
Q ss_pred CCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 156 PTTGLDSFS------------ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 156 PtsgLD~~~------------~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
||+++|+.. ..+++..|++++++.|.|||+++|... .....++....+..|+++.++
T Consensus 240 ~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 240 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp SSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTT
T ss_pred chHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeec
Confidence 999999862 466777788876667999999999863 444344455556666655443
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.80 E-value=1.2e-19 Score=163.37 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=106.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
-+.+|++++|+||||||||||++.+++.... |.++ .|.+... ...+.|+..++... .+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~~-~g~~~~~--~~~v~~~~~e~~~~---~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDL-LEVGELP--TGPVIYLPAEDPPT---AIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCT-TCCCCCC--CCCEEEEESSSCHH---HHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCc-CCCccCC--CccEEEEECCCCHH---HHHHHHH---HHH
Confidence 4789999999999999999999999986543 6653 3544321 34577876654210 1111111 111
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC--CCCHHHH-
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT--GLDSFSA- 165 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts--gLD~~~~- 165 (290)
. .... ....++++.+++.+..++. +..||+||+|++ ++++.+|+++++||||+ ++|+...
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~--------~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~ 154 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL--------PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASG 154 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC--------CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC--------cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchH
Confidence 1 0111 1235677888887777666 456999998765 68889999999999999 9998544
Q ss_pred --HHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 166 --SKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 166 --~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
.++++.|++++++.|+|||+++|+.
T Consensus 155 ~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 8888999998666699999999986
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.79 E-value=2.1e-20 Score=161.73 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=105.2
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-ccc---ccEEEEccCCCCCCCCCHHHHHHHH
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFR---SACGFMYQHDLFSPSLTVYEHLYFM 84 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~---~~ig~v~Q~~~~~~~lTv~e~l~~~ 84 (290)
.+.+|++++|+||||||||||++.|++...+. .|.|.+.+.+... .+. ..+++.+|+.... .+.+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------- 87 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII------- 87 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE-------
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE-------
Confidence 68899999999999999999999999877652 4667664433211 000 1122222210000 0000
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC--eEEEeCCCCCC--
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLLCDEPTTGL-- 160 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--llllDEPtsgL-- 160 (290)
. +.+...++ .... ....|.++.++...+.+...+|+ ++++||||+.+
T Consensus 88 --~---------------~~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~ 138 (235)
T 2w0m_A 88 --I---------------DALMKEKE-DQWS-----------LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD 138 (235)
T ss_dssp --E---------------ECCC-----CTTB-----------CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS
T ss_pred --E---------------eccccccC-ceee-----------ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC
Confidence 0 00000000 0001 12259999999888888888999 99999999887
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc-------HHHHhhcCeEEEEeCC
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPS-------SELIDMFDKIILLADS 207 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~-------~~~~~~~d~v~~l~~G 207 (290)
|+..+.++++.|++++++.|.|||+++|+.. ..+..+||++++|+..
T Consensus 139 d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 139 KPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp CGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9999999999999997677999999999962 2378899999999864
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.79 E-value=1.6e-20 Score=191.34 Aligned_cols=153 Identities=17% Similarity=0.114 Sum_probs=104.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||. ++|++++|+||||||||||||+|+|+.... ..|. .+.. .+..+++++| +++.+++.+++..
T Consensus 599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G~------~vpa-~~~~i~~~~~---i~~~~~~~d~l~~ 665 (800)
T 1wb9_A 599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIGS------YVPA-QKVEIGPIDR---IFTRVGAADDLAS 665 (800)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTTC------CBSS-SEEEECCCCE---EEEEEC-------
T ss_pred eccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcCc------ccch-hcccceeHHH---HHhhCCHHHHHHh
Confidence 468888 899999999999999999999999975321 1231 1111 1234666655 4555566655432
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+ .+.+|+++++ ++.+..++.+|+++|||||++|+|+.
T Consensus 666 ~------------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 666 G------------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred h------------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 1 1126777664 44455568999999999999999998
Q ss_pred HHHHH-HHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 164 SASKL-IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 164 ~~~~i-~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
....+ +.+++.++++.|.++|++||++ ++..++|++..+.+|++.+...
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEc
Confidence 77775 7888888543589999999996 3567899887788887766543
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.78 E-value=2.8e-22 Score=171.48 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=103.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHHHHHHhcCc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD 90 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~ 90 (290)
|++++|+||||||||||+++|+|+++ + +| |.++|.+... .+++.+||++|+. .... +++. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l~---~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPLS---RVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEEE---ECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehhh---ccc--
Confidence 78999999999999999999999987 4 69 9999987743 3678899999964 1111 1110 000
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHH-HHHH---HHHhCCCeEEEeC--CCCCCCHH
Q psy2520 91 RRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRL-SFAT---ELLTDPALLLCDE--PTTGLDSF 163 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv-~ia~---aL~~~p~llllDE--PtsgLD~~ 163 (290)
++..+ ..+..++.. ...+|+|||+++ ++++ |++.+|++||+|| |+..+|+.
T Consensus 66 ------------------~~~~~~~~~~~v~~~----~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~ 123 (189)
T 2i3b_A 66 ------------------LEPPPGKRECRVGQY----VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123 (189)
T ss_dssp ------------------CCCCSSSCCEESSSS----EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSH
T ss_pred ------------------ccCCccccccccceE----EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHH
Confidence 01111 011123321 234999999988 4444 5799999999999 89999997
Q ss_pred HHHHHHHHHHHHHhcCCcEEEE----EeCCCcHHHHhhcCeEEEEeCCeEEEE
Q psy2520 164 SASKLIRMMRELTSQRKKTVLC----TIHQPSSELIDMFDKIILLADSRTAFI 212 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~----~tH~~~~~~~~~~d~v~~l~~G~i~~~ 212 (290)
....+.++++ . ..++|+ ++|+.. ..+.|+|..+.+|+++.-
T Consensus 124 ~~~~l~~~l~----~-~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 124 FIQAVRQTLS----T-PGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp HHHHHHHHHH----C-SSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHHh----C-CCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEe
Confidence 6665555554 2 234443 349852 246677777788887753
No 110
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=1.2e-20 Score=172.41 Aligned_cols=151 Identities=17% Similarity=0.103 Sum_probs=85.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcC-CCCCCCCccEEEECCEecCcc-ccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQR-LPDDCIIDGDIRVNGKPVEGK-FRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~-~~~~~~~~G~I~i~G~~~~~~-~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.+++|.+ +|+||||||||||+++|+|. ..|. +| |.++|.++... ..+.+++++|.+.+...+||+|++
T Consensus 15 ~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~ 84 (301)
T 2qnr_A 15 KGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTP 84 (301)
T ss_dssp ---CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC
T ss_pred cCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhh
Confidence 3566766 99999999999999999997 6663 68 88888776442 235689999988888889999988
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC-CC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT-GL 160 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts-gL 160 (290)
.++..... . +.....+..+. +..+.. +.++|||||||+.+||+++ ++++||||+ +|
T Consensus 85 g~~~~~~~-~----e~~~~l~~~l~------~~~~~~--------~~~~sgg~rqrv~~ara~~----ll~ldePt~~~L 141 (301)
T 2qnr_A 85 GYGDAINC-R----DCFKTIISYID------EQFERY--------LHDESGLNRRHIIDNRVHC----CFYFISPFGHGL 141 (301)
T ss_dssp ----------------CTTHHHHHH------HHHHHH--------HHHHTSSCCTTCCCCCCCE----EEEEECSSSSSC
T ss_pred hhhhhcCc-H----HHHHHHHHHHH------HHHHHH--------HHHhCHHhhhhhhhhhhhh----eeeeecCcccCC
Confidence 77543210 0 00000111111 112333 2349999999999999885 999999998 59
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
|+... ++++++..+.+.++|+++||+.
T Consensus 142 d~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 142 KPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99873 5666764434789999999974
No 111
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.75 E-value=3.1e-20 Score=162.30 Aligned_cols=148 Identities=17% Similarity=0.178 Sum_probs=101.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCH----HHHHHHH
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTV----YEHLYFM 84 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv----~e~l~~~ 84 (290)
..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+.+++.....+..++|+||++.+|+.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 46899999999999999999999999998862 257999998877644445679999997544443333 1111110
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
. . +.|-.+++ +..++..++++||| ||+.+
T Consensus 91 ~-------------------------------~------------~yg~~~~~---v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 91 G-------------------------------N------------YYGTSREA---IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp T-------------------------------E------------EEEEEHHH---HHHHHTTTCEEEEE-----CCHHH
T ss_pred h-------------------------------c------------cCCCCHHH---HHHHHhcCCeEEEE-----ECHHH
Confidence 0 0 11111221 34455668999999 99999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHH
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 223 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 223 (290)
+.++.+.+. .+.||++++|++. ++.. |+ +..| .++++++...+.
T Consensus 120 ~~~i~~~l~-----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 120 AQQIRQKMP-----HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHHHCT-----TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHHHHcc-----CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHHHHH
Confidence 999998775 4799999999973 4444 43 6777 577887765443
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.74 E-value=3.9e-19 Score=165.94 Aligned_cols=128 Identities=25% Similarity=0.329 Sum_probs=87.7
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
...+|++++|+|||||||||||++|+|+++|. ..|.|...+.++....+...++++|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeeccc---------------
Confidence 45688999999999999999999999998873 1466654433332222223334444211100
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 168 (290)
.++..+ +||+||.++|++|++|||| |+.+
T Consensus 182 ----------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~---- 210 (356)
T 3jvv_A 182 ----------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLET---- 210 (356)
T ss_dssp ----------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHH----
T ss_pred ----------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHH----
Confidence 123222 8999999999999999999 6555
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCC
Q psy2520 169 IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 207 (290)
Q Consensus 169 ~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G 207 (290)
++.+.+. .+.|.+|++++|+.+ . ...+||++.|..|
T Consensus 211 ~~~~~~~-~~~G~~vl~t~H~~~-~-~~~~dRli~l~~~ 246 (356)
T 3jvv_A 211 IRLALTA-AETGHLVFGTLHTTS-A-AKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHH-HHTTCEEEEEESCSS-H-HHHHHHHHHTSCH
T ss_pred HHHHHHH-HhcCCEEEEEEccCh-H-HHHHHHHhhhcCc
Confidence 3344444 345899999999974 4 4889999988654
No 113
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.73 E-value=3e-21 Score=163.44 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=112.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCchh
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR 92 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~ 92 (290)
|++++|+||||||||||+++|++ + .+|.++++|.++... ..+++++|.....+.+++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~---~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---Q---LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---H---SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---c---cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999998 3 258999988765322 235677775544455678888776543210000
Q ss_pred hhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCC--ChHHHHHHHHHH------HHHhCCCeEEEeCCCCCCCHHH
Q psy2520 93 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL--SGGERKRLSFAT------ELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~L--SgGqrqRv~ia~------aL~~~p~llllDEPtsgLD~~~ 164 (290)
. ..+++.+. .....+. ...+ |+|++|++.++. +++.+|+...+|+ ++|+..
T Consensus 74 ~---------~~ild~~~-~~~~~~~--------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 74 N---------DVVLDYIA-FPDEAEA--------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp C---------EEEEESCC-CHHHHHH--------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred C---------cEEEeecc-CHHHHHH--------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0 00000000 0000000 0124 888888888888 9999999888884 899988
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCC-CcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQ-PSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~-~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
... ++.+..+ .+.+.++|.+||. +. ++.++||+|+ ++|++++.|+++
T Consensus 133 ~~~-~~~~~~~-~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~ 180 (189)
T 2bdt_A 133 LEL-VEEFESK-GIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGD 180 (189)
T ss_dssp GHH-HHHHHHT-TCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC----
T ss_pred HHH-HHHHhhc-CCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCC
Confidence 888 8888887 4557899999998 74 6889999998 999999999886
No 114
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.70 E-value=2.6e-21 Score=180.94 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=102.6
Q ss_pred cceEEEEeC--CeEEEEECCCCChHHHHHHHHHcCCCCCCCCc----cEEEEC----CEecCc---cccccEEEEccCCC
Q psy2520 4 LELTGAALS--GTLVAIMGASGAGKSTLLAALSQRLPDDCIID----GDIRVN----GKPVEG---KFRSACGFMYQHDL 70 (290)
Q Consensus 4 ~~is~~~~~--Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~----G~I~i~----G~~~~~---~~~~~ig~v~Q~~~ 70 (290)
..|++.+.+ |+.++|+||||||||||+++|+|+++|. + |+|+++ |.++.. .+ ..|++++|+..
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 458888999 9999999999999999999999999883 6 776653 222100 01 11333332211
Q ss_pred CCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH-hCCC
Q psy2520 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-TDPA 149 (290)
Q Consensus 71 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~-~~p~ 149 (290)
++ ..|+.+|+.++ ..+..++. +..+|+|++|+..+++++. .+|+
T Consensus 235 ~~-~~t~~~nl~~~--------------------------~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~ 279 (365)
T 1lw7_A 235 DY-AVRHSHKIAFI--------------------------DTDFITTQ--------AFCIQYEGKAHPFLDSMIKEYPFD 279 (365)
T ss_dssp HH-HHHHCSSEEEE--------------------------SSCHHHHH--------HHHHHHHSCCCHHHHHHHHHSCCS
T ss_pred HH-HHhccCCEEEE--------------------------eCCchHHH--------HHHHHHcCCCCHHHHHHHhhcCCC
Confidence 00 01111111110 00111111 1126677788888888774 6999
Q ss_pred eEEEeC---CC------CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 150 LLLCDE---PT------TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 150 llllDE---Pt------sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
++|||| |+ .++|+..+..+.+.|+++.++.|.+|++++|. . +..++++++.++++
T Consensus 280 lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 280 VTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK 343 (365)
T ss_dssp EEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH
T ss_pred EEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH
Confidence 999999 65 58999999999999998755558899999975 2 56778887776653
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.70 E-value=5.3e-17 Score=136.80 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=71.1
Q ss_pred CCCCChHHHHHHHHHHHHHhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE
Q psy2520 127 KVVLSGGERKRLSFATELLTD----PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 202 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~~~----p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~ 202 (290)
+..||||||||++||++|+.+ |+++||||||++||+.++..+.++|+++ .+ +.++|++||+. .....||+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~-~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKES-SK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH-TT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHh-cc-CCEEEEEEecH--HHHHhCCEEE
Confidence 456999999999999999854 6999999999999999999999999998 43 46899999984 5678999998
Q ss_pred EE--eCCeE-EEEcCHHHH
Q psy2520 203 LL--ADSRT-AFIGSKDAA 218 (290)
Q Consensus 203 ~l--~~G~i-~~~g~~~~~ 218 (290)
.+ .+|.. +...+.++.
T Consensus 138 ~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp EEEEETTEEEEEECCHHHH
T ss_pred EEEecCCEEEEEEEEcHHH
Confidence 65 46643 233444443
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.69 E-value=2.6e-17 Score=141.47 Aligned_cols=147 Identities=17% Similarity=0.127 Sum_probs=95.1
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
-+.+|++++|+||||||||||++.+++ .+. .+.++++. +..+ +.. .+.-.....
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~---~~v~~i~~----------------~~~~----~~~-~~~~~~~~~ 69 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL--LSG---KKVAYVDT----------------EGGF----SPE-RLVQMAETR 69 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH--HHC---SEEEEEES----------------SCCC----CHH-HHHHHHHTT
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH--HcC---CcEEEEEC----------------CCCC----CHH-HHHHHHHhc
Confidence 478999999999999999999999999 321 22233322 2111 111 111111110
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHH--HHHHHHHHHHHhC-CCeEEEeCCCCCCCHHH-
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE--RKRLSFATELLTD-PALLLCDEPTTGLDSFS- 164 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGq--rqRv~ia~aL~~~-p~llllDEPtsgLD~~~- 164 (290)
. ... +++++.+.+ ..+|+++ +++++.+++++.+ |+++++||||+.+|+..
T Consensus 70 ~---~~~-------~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~ 123 (220)
T 2cvh_A 70 G---LNP-------EEALSRFIL----------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEEN 123 (220)
T ss_dssp T---CCH-------HHHHHHEEE----------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGG
T ss_pred C---CCh-------HHHhhcEEE----------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCc
Confidence 0 000 122222211 1245554 5688888899886 99999999999999743
Q ss_pred -------HHHHHHHHHHHHhcCCcEEEEEeCCCcH------------HHHhhcCeEEEEeCC
Q psy2520 165 -------ASKLIRMMRELTSQRKKTVLCTIHQPSS------------ELIDMFDKIILLADS 207 (290)
Q Consensus 165 -------~~~i~~~l~~l~~~~g~tii~~tH~~~~------------~~~~~~d~v~~l~~G 207 (290)
..++++.|++++++.|.|||+++|.... .+...||++++|+..
T Consensus 124 ~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 124 RSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 3556667888866668999999998531 467789999999864
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.69 E-value=7.5e-20 Score=154.61 Aligned_cols=150 Identities=14% Similarity=0.071 Sum_probs=95.3
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc--ccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK--FRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~--~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++... .++.++|++|+.. +.+||.+++.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 4789999999999999999999999997 32 69999999765321 2234677777543 35688888876542
Q ss_pred hcCchhhhHHHHHHHHHHHHHHcCCCCcc--CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 87 LKLDRRVKAYQRIALINSLLIELGLMNSQ--HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
........ ..++.++..+++.... +.. +..+|+|++|++.++|++..+|+++ +|+..
T Consensus 78 ~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~--------~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~ 136 (191)
T 1zp6_A 78 RYAKEGYF-----VILDGVVRPDWLPAFTALARP--------LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLV 136 (191)
T ss_dssp HHHHTSCE-----EEECSCCCTTTTHHHHTTCSC--------EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHH
T ss_pred HHhccCCe-----EEEeccCcHHHHHHHHhcCCC--------eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHH
Confidence 21000000 0000000111111111 222 2349999999999999999999876 68888
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEe
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTI 187 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~t 187 (290)
...+.+.+..+. ..+..+|.++
T Consensus 137 ~~~~~~~~~~l~-~~~~~~i~t~ 158 (191)
T 1zp6_A 137 VADLHSQFADLG-AFEHHVLPVS 158 (191)
T ss_dssp HHHHHHHTTCCG-GGGGGEEECT
T ss_pred HHHHHHHHhccC-cccccEEECC
Confidence 888888777663 2233344444
No 118
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.68 E-value=3.8e-20 Score=163.54 Aligned_cols=143 Identities=14% Similarity=0.082 Sum_probs=100.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHH---cCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHh-
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALS---QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL- 87 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~---G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~- 87 (290)
++++++|+||||||||||+++|+ |+..++ +|+|.++|.+........+++++|+..+++..++.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999999 998874 79998877543222334456677887788888999999875421
Q ss_pred -------cCchhhhHHHHHHHHHHHHH--HcC------------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH-H
Q psy2520 88 -------KLDRRVKAYQRIALINSLLI--ELG------------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL-L 145 (290)
Q Consensus 88 -------~~~~~~~~~~~~~~~~~~l~--~~~------------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL-~ 145 (290)
.... .... .+..+.. .++ +....++. +..||| |+ ++| +
T Consensus 103 ~~~~~il~g~~-~~~~----~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~--------~~~lSg----rv---~al~~ 162 (246)
T 2bbw_A 103 RGQHWLLDGFP-RTLG----QAEALDKICEVDLVISLNIPFETLKDRLSRRW--------IHPPSG----RV---YNLDF 162 (246)
T ss_dssp TTSCEEEESCC-CSHH----HHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE--------EETTTT----EE---EETTT
T ss_pred CCCeEEEECCC-CCHH----HHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC--------CcCCCC----Cc---ccccc
Confidence 1100 1111 1112211 112 12223444 344999 66 677 9
Q ss_pred hCCCeEEEe----CCCCCCCHHHHHHHHHHHHHHHh
Q psy2520 146 TDPALLLCD----EPTTGLDSFSASKLIRMMRELTS 177 (290)
Q Consensus 146 ~~p~llllD----EPtsgLD~~~~~~i~~~l~~l~~ 177 (290)
.+|++++|| |||++||+.+...+.+.|+.+.+
T Consensus 163 ~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 163 NPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp SCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999843
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.67 E-value=1e-17 Score=157.21 Aligned_cols=125 Identities=21% Similarity=0.302 Sum_probs=94.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 89 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~ 89 (290)
+++|++++|+||||||||||+++|+|+++|. .+|+|.+.|.++...++..++|++|..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~-------------------- 190 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE-------------------- 190 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE--------------------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee--------------------
Confidence 6899999999999999999999999998873 169998777665434566788888841
Q ss_pred chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHH
Q psy2520 90 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI 169 (290)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~ 169 (290)
+|+. +..+ +.+|+++|..+|+++++|||+ |+.+..
T Consensus 191 -------------------~g~~--------------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~--- 225 (372)
T 2ewv_A 191 -------------------VGED--------------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE--- 225 (372)
T ss_dssp -------------------BTTT--------------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---
T ss_pred -------------------cCCC--------------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---
Confidence 1111 1125 469999999999999999999 776543
Q ss_pred HHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 170 RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 170 ~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
..++.. ..|.+++.++|+. + +...+||++.|.
T Consensus 226 ~~l~~~--~~g~~vi~t~H~~-~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 226 TALRAA--ETGHLVFGTLHTN-T-AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHH--TTTCEEEECCCCC-S-HHHHHHHHHHTS
T ss_pred HHHHHH--hcCCEEEEEECcc-h-HHHHHHHHHHhc
Confidence 344443 3588999999995 3 678888887664
No 120
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.66 E-value=1.4e-20 Score=173.09 Aligned_cols=160 Identities=15% Similarity=0.153 Sum_probs=106.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC--------CCCCCCccEEEECCEecCc-------------------cccccEEEE-
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL--------PDDCIIDGDIRVNGKPVEG-------------------KFRSACGFM- 65 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~--------~~~~~~~G~I~i~G~~~~~-------------------~~~~~ig~v- 65 (290)
++++|+|+||||||||||.|.|.. .| ..|+|.++|.++.. .+++.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~---d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN---EFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS---SCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe---cCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 45 37999999988743 123457777
Q ss_pred --ccCCCCCCCCCHHHHHHHHHHhcCchhh---hHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHH
Q psy2520 66 --YQHDLFSPSLTVYEHLYFMALLKLDRRV---KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSF 140 (290)
Q Consensus 66 --~Q~~~~~~~lTv~e~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~i 140 (290)
+|+..+++..+|.|+..++......... ........+..++..+++.+..++. .++|+||+||+..
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~---------~~ls~g~~Q~~~a 152 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM---------NQFTIAQSQVGYA 152 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH---------HHCHHHHHHHHTC
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH---------hhchHHHHHHHhC
Confidence 6776666677777776543100000000 0000011112223334444444433 1389999999998
Q ss_pred HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcC
Q psy2520 141 ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 199 (290)
Q Consensus 141 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d 199 (290)
+++++.+|+++ ||| ..+.+.|+++ . .+.+|+++||++. .+..++|
T Consensus 153 d~ill~k~dl~--de~---------~~l~~~l~~l-~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 153 DRILLTKTDVA--GEA---------EKLHERLARI-N-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp SEEEEECTTTC--SCT---------HHHHHHHHHH-C-SSSCEEECCSSCC-CGGGGSC
T ss_pred CEEEEECcccC--CHH---------HHHHHHHHHh-C-CCCeEEEecccCC-CHHHHhC
Confidence 89999999987 998 7788888887 3 4789999999864 3444443
No 121
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.66 E-value=4.4e-17 Score=142.14 Aligned_cols=153 Identities=17% Similarity=0.207 Sum_probs=86.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHc--CCCCC--CCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQ--RLPDD--CIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G--~~~~~--~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
+-+.+|++++|+||||||||||++.|++ ..++. ....|.+++++++.. ....-...
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~--------------------~~~~~~~~ 78 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF--------------------RPERLLAV 78 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--------------------CHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc--------------------CHHHHHHH
Confidence 3478999999999999999999999999 45441 002466666654310 01100000
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHH-HHHHHHHH--hCCCeEEEeCCCCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR-LSFATELL--TDPALLLCDEPTTGL 160 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqR-v~ia~aL~--~~p~llllDEPtsgL 160 (290)
....... . +++++.+.+ ....+..+... +.-+..++ .+|+++++|||++.+
T Consensus 79 ~~~~g~~---~--------~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 79 AERYGLS---G--------SDVLDNVAY---------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALY 132 (243)
T ss_dssp HHHTTCC---H--------HHHHHTEEE---------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGG
T ss_pred HHHcCCC---H--------HHHhhCeEE---------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHH
Confidence 0001000 0 011111100 01144444332 22233333 589999999999999
Q ss_pred CHH-------H-----HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh-------------------hcCeEEEEeCC
Q psy2520 161 DSF-------S-----ASKLIRMMRELTSQRKKTVLCTIHQPSSELID-------------------MFDKIILLADS 207 (290)
Q Consensus 161 D~~-------~-----~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~-------------------~~d~v~~l~~G 207 (290)
|+. . ..+++..|++++++.|.|||+++|... .... +||.+++|+.|
T Consensus 133 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 133 RTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 985 3 355677777776666999999999753 3222 78999999865
No 122
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.66 E-value=4.2e-17 Score=152.00 Aligned_cols=130 Identities=18% Similarity=0.094 Sum_probs=90.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC-CCCCCccEEEEC-CEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLP-DDCIIDGDIRVN-GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~-~~~~~~G~I~i~-G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
.+|++++|+||||||||||+|+|+|... +. +|+|.++ |+......+..+++++|+..+++..+|+++. +.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~-----l~ 284 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG-----LW 284 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC-------------CCCEEEECTTSCEEEECHHHHTCC-----CC
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh-----hc
Confidence 3799999999999999999999999998 74 7999987 7654333456799999998888888898841 11
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 168 (290)
.....+....+.++++.+++.++.+.. +.+|| ||+||++||+++ +++.-....
T Consensus 285 ---~l~~~e~~~~~~e~l~~~gl~~f~~~~--------~~~lS-G~~~r~ala~gl---------------i~~~R~~~y 337 (358)
T 2rcn_A 285 ---HLEPEQITQGFVEFHDYLGHCKYRDCK--------HDADP-GCAIREAVENGA---------------IAETRFENY 337 (358)
T ss_dssp ---CCCHHHHHHTSGGGGGGTTCSSSTTCC--------SSSCT-TCHHHHHHHHTS---------------SCHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHcCCchhcCCC--------cccCC-HHHHHHHHHhcC---------------CCHHHHHHH
Confidence 122233345567888999998888887 45599 999999999864 344444455
Q ss_pred HHHHHHH
Q psy2520 169 IRMMREL 175 (290)
Q Consensus 169 ~~~l~~l 175 (290)
.+++.++
T Consensus 338 ~~l~~e~ 344 (358)
T 2rcn_A 338 HRILESM 344 (358)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666665
No 123
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.66 E-value=7e-19 Score=150.29 Aligned_cols=159 Identities=17% Similarity=0.070 Sum_probs=89.9
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCC-----CCCCCCccEEEECCEecCccccccEEEEccCCCCC----CCCC--
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRL-----PDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS----PSLT-- 76 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~-----~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~----~~lT-- 76 (290)
|.+.+|..++|+|+||||||||++.|+|.. .| +.|.+.+.+.-. +...+-++ .-+.+. +...
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~~---~~~~~~l~-Dt~G~~~~~~~~~~~~ 93 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLFE---VADGKRLV-DLPGYGYAEVPEEMKR 93 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEE---EETTEEEE-ECCCCC------CCHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEEE---ecCCEEEE-ECcCCcccccCHHHHH
Confidence 667899999999999999999999999987 44 356654322100 00011111 111110 0000
Q ss_pred -HHHHHHHHHHh-cCc--------hhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHH-HHHHHHH
Q psy2520 77 -VYEHLYFMALL-KLD--------RRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKR-LSFATEL 144 (290)
Q Consensus 77 -v~e~l~~~~~~-~~~--------~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqR-v~ia~aL 144 (290)
....+...... ... ...........+.+++...++... ..++ +..+|+||+|| +..++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK--------~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 94 KWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK--------ADKLASGARKAQLNMVREA 165 (210)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC--------GGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec--------ccCCCchhHHHHHHHHHHH
Confidence 11112111110 000 000000111234556666776543 2344 34499999999 8999999
Q ss_pred HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q psy2520 145 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182 (290)
Q Consensus 145 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 182 (290)
+.+|.++++|||||++|+.+..++++.|.++.. .|.|
T Consensus 166 ~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~-~~~~ 202 (210)
T 1pui_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS-EMQP 202 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred HHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh-hccc
Confidence 999999999999999999999999999999843 3543
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.65 E-value=2.7e-18 Score=165.58 Aligned_cols=153 Identities=13% Similarity=0.194 Sum_probs=105.9
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------c--ccccEEEEccCCCCC
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------K--FRSACGFMYQHDLFS 72 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~--~~~~ig~v~Q~~~~~ 72 (290)
..++||.+.+|++++|+||||||||||+++|+|++++. .|+|.++|.+... . .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999999874 6999998877632 1 256799999998888
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH-HhCC-Ce
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL-LTDP-AL 150 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL-~~~p-~l 150 (290)
+.+||++++.++....... -+++..|+.+.... +-.-.+|++.+++++ ...| .+
T Consensus 360 p~~tV~e~l~~a~~~~~Dv------------VLIDTaGrl~~~~~------------lm~EL~kiv~iar~l~~~~P~ev 415 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNIDV------------LIADTAGRLQNKSH------------LMEELKKIVRVMKKLDVEAPHEV 415 (503)
T ss_dssp HHHHHHHHHHHHHHTTCSE------------EEECCCCSCCCHHH------------HHHHHHHHHHHHHTTCTTCSSEE
T ss_pred HHHHHHHHHHHHHhcCCCE------------EEEeCCCccchhhh------------HHHHHHHHHHHHHHhccCCCCee
Confidence 8889999998865321100 01222232211111 122334788888866 3457 35
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH 188 (290)
||...|++|.|.. +.++.+...-+.|.|++||
T Consensus 416 LLvLDattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 416 MLTIDASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred EEEecCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 5555588886554 3344443335789999999
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.65 E-value=1.3e-17 Score=153.99 Aligned_cols=163 Identities=12% Similarity=0.117 Sum_probs=111.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------ccc--ccEEEEccCCCCCCCCCHHHH
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFR--SACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~--~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
++|++++|+||||||||||+++|+|+++|. .|+|.+.|.++.. .++ ..+.+++|...+.|.++|++|
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999999884 7999999999753 122 246699999888999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.++....... -+++..|+.+..... ..+.-.+++++..++.+++||.++.
T Consensus 204 l~~~~~~~~d~------------vliDtaG~~~~~~~l---------------~~eL~~i~ral~~de~llvLDa~t~-- 254 (328)
T 3e70_C 204 IQHAKARGIDV------------VLIDTAGRSETNRNL---------------MDEMKKIARVTKPNLVIFVGDALAG-- 254 (328)
T ss_dssp HHHHHHHTCSE------------EEEEECCSCCTTTCH---------------HHHHHHHHHHHCCSEEEEEEEGGGT--
T ss_pred HHHHHhccchh------------hHHhhccchhHHHHH---------------HHHHHHHHHHhcCCCCEEEEecHHH--
Confidence 98764321100 012223333222222 2333348899988888888885543
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc--------HHHHhhcCeEEEEeCCeEE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPS--------SELIDMFDKIILLADSRTA 210 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~--------~~~~~~~d~v~~l~~G~i~ 210 (290)
.++++.++.+....+.|+|++||.-. ..+....-.|.++..|+-+
T Consensus 255 -----~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 255 -----NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp -----THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred -----HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 35566667775456899999999521 1122334567777777643
No 126
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=8.6e-18 Score=159.87 Aligned_cols=146 Identities=15% Similarity=0.090 Sum_probs=86.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||.+ +|+||||||||||+++|+|...+.. ..|.+.+++.+ ......+++++|++.+++.+||+||+.+
T Consensus 28 ~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~-~~~~~~~~~~~--t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~ 98 (418)
T 2qag_C 28 RGFEFTL------MVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKK--TVQVEQSKVLIKEGGVQLLLTIVDTPGF 98 (418)
T ss_dssp -CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCC-CCCSCC-------CCEEEEEECC------CEEEEEEECC--
T ss_pred cCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCC-CCCCcccCCcc--ceeeeeEEEEEecCCcccceeeeechhh
Confidence 4667776 9999999999999999999987521 12222222211 1123568999998888888999999887
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC---eEEEeCCC-CC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA---LLLCDEPT-TG 159 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~---llllDEPt-sg 159 (290)
+..... ......+.+.++ .. ++.+++||++|||+++.+|+ +|++|||| ++
T Consensus 99 ~~~~~~------~~~~~~i~~~i~---------~~-----------~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~ 152 (418)
T 2qag_C 99 GDAVDN------SNCWQPVIDYID---------SK-----------FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG 152 (418)
T ss_dssp ---------------CHHHHHHHH---------HH-----------HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCS
T ss_pred hhhccc------hhhHHHHHHHHH---------HH-----------HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccC
Confidence 643210 000011122222 12 67788889999999999999 99999999 69
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
||+... .+++.+ .. +.+||+|.|..
T Consensus 153 L~~~d~----~~lk~L-~~-~v~iIlVinK~ 177 (418)
T 2qag_C 153 LKPLDI----EFMKRL-HE-KVNIIPLIAKA 177 (418)
T ss_dssp CCHHHH----HHHHHH-TT-TSEEEEEEEST
T ss_pred CCHHHH----HHHHHH-hc-cCcEEEEEEcc
Confidence 999873 455666 33 67888887764
No 127
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=1.3e-17 Score=158.57 Aligned_cols=175 Identities=15% Similarity=0.105 Sum_probs=109.3
Q ss_pred cceEEEEeCCeE--EEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTL--VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~--~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.++||.+++|++ ++|+||||||||||+|+|+|+.- .|..... .. ....++.++|++|++.+++.+||.||+
T Consensus 31 ~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~-~~-~~~~~~~i~~v~Q~~~l~~~ltv~D~~ 103 (427)
T 2qag_B 31 QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATH-TQ-PGVQLQSNTYDLQESNVRLKLTIVSTV 103 (427)
T ss_dssp HHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CC-SSCEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred CCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCC-CC-ccceEeeEEEEeecCccccccchhhhh
Confidence 368899999999 99999999999999999999842 2321110 00 112345799999998888889999998
Q ss_pred HHHHHhcCchhh--hHHHHHHHHHHHHHHc-CCCC----ccCcccCCc-C-CC-CCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 82 YFMALLKLDRRV--KAYQRIALINSLLIEL-GLMN----SQHTRIGSS-S-IT-QKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 82 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~-~l~~----~~~~~v~~~-~-~~-~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
.|+......... -.......+.++|... ++.. ..+.++.-- + +. ....|+-.+ +.|+++|..+++++
T Consensus 104 ~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI 180 (427)
T 2qag_B 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNII 180 (427)
T ss_dssp CCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEE
T ss_pred hhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEE
Confidence 775321100000 0011223445566654 4431 122221000 0 00 002366665 78999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHH-HHhcCCcEEEEEeCC
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRE-LTSQRKKTVLCTIHQ 189 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~-l~~~~g~tii~~tH~ 189 (290)
++|+|+..|.+.....+.+.+++ + ...|.+|+.++.+
T Consensus 181 ~Vi~KtD~Lt~~E~~~l~~~I~~~L-~~~gi~I~~is~~ 218 (427)
T 2qag_B 181 PIIAKADAISKSELTKFKIKITSEL-VSNGVQIYQFPTD 218 (427)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHH-BTTBCCCCCCC--
T ss_pred EEEcchhccchHHHHHHHHHHHHHH-HHcCCcEEecCCC
Confidence 99999999999999999999997 7 6679999998865
No 128
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.61 E-value=1.5e-16 Score=148.66 Aligned_cols=135 Identities=18% Similarity=0.199 Sum_probs=99.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec-Cc-cccccEEEEc-cCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-EG-KFRSACGFMY-QHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~-~~-~~~~~ig~v~-Q~~~~~~~lTv~e~ 80 (290)
.++|+.+++|++++|+||||||||||+++|+|+++|. +|.|.++|..- .. ..+..++|++ |++.+-
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~-------- 234 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEE-------- 234 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC--------------
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccc--------
Confidence 5688999999999999999999999999999999984 79999998431 11 2566799998 653310
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
++++..++..|+.++..+|+.+++|||..
T Consensus 235 -------------------------------------------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-- 263 (361)
T 2gza_A 235 -------------------------------------------------ENAPVTAATLLRSCLRMKPTRILLAELRG-- 263 (361)
T ss_dssp -----------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS--
T ss_pred -------------------------------------------------cccccCHHHHHHHHHhcCCCEEEEcCchH--
Confidence 11122345566666677899999999986
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
.++.+.|+.+ .....|++.++|..+ ....+||+..|..+.
T Consensus 264 -----~~~~~~l~~l-~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 -----GEAYDFINVA-ASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp -----THHHHHHHHH-HTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred -----HHHHHHHHHH-hcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777 343457899999953 678899999998774
No 129
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.57 E-value=1.9e-16 Score=132.89 Aligned_cols=47 Identities=11% Similarity=0.163 Sum_probs=40.9
Q ss_pred HhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH
Q psy2520 145 LTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192 (290)
Q Consensus 145 ~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~ 192 (290)
+.+|++|+||||++ ++|+..+..+.+++... .+.|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~-~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYR-YNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHH-HHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHH-HHcCCCEEEEcCCChh
Confidence 45999999999985 99999999999999987 4458999999998753
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.57 E-value=8.7e-16 Score=145.33 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=48.2
Q ss_pred hCCCeEEEeCCCCCCCHHHH------------HHHHHHHHHHHhcCCcEEEEEeCCCc------------------HHHH
Q psy2520 146 TDPALLLCDEPTTGLDSFSA------------SKLIRMMRELTSQRKKTVLCTIHQPS------------------SELI 195 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~------------~~i~~~l~~l~~~~g~tii~~tH~~~------------------~~~~ 195 (290)
.+|+++++|||++.+|+... .+++..|++++++.|.|||+++|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999997543 67888899987777999999999821 1246
Q ss_pred hhcCeEEEEeCCe
Q psy2520 196 DMFDKIILLADSR 208 (290)
Q Consensus 196 ~~~d~v~~l~~G~ 208 (290)
..+|.+++|..++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999998764
No 131
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.57 E-value=9.8e-17 Score=133.19 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=61.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcccc-ccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFR-SACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~-~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.++||++++|++++|+||||||||||+++|+|++ |. +|+|.++|.++..... .. +++|+..++ .+||.|++.
T Consensus 24 ~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv~e~l~ 96 (158)
T 1htw_A 24 ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLADPEELE 96 (158)
T ss_dssp HHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETT--EEEEEEECT-TCSCTTHHH
T ss_pred hccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCC--cceeccccc-cCCcHHHHH
Confidence 3678999999999999999999999999999999 73 7999999988743221 22 799988888 899999996
Q ss_pred H
Q psy2520 83 F 83 (290)
Q Consensus 83 ~ 83 (290)
+
T Consensus 97 ~ 97 (158)
T 1htw_A 97 F 97 (158)
T ss_dssp H
T ss_pred H
Confidence 5
No 132
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.57 E-value=1.1e-17 Score=140.73 Aligned_cols=138 Identities=13% Similarity=0.162 Sum_probs=87.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------ccc-ccEE----EEccCCCCCCCCCHHHHH
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFR-SACG----FMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~-~~ig----~v~Q~~~~~~~lTv~e~l 81 (290)
++++|+|+||||||||+++|+|+++|.....|.|.++|.++.. .+| +.+| +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 5899999999999999999999998742237999999987421 244 3566 788876544 000
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHH-cCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE-------EE
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIE-LGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL-------LC 153 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll-------ll 153 (290)
.. .. ....+.+++.. +. ..+..+++ .|||||+||++||||++.+|++. .-
T Consensus 77 -------~~----~~-~~a~l~~~i~~~l~---g~dt~i~E-------glSgGq~qri~lARall~~p~i~~~~~~a~~~ 134 (171)
T 2f1r_A 77 -------VS----EE-EGNDLDWIYERYLS---DYDLVITE-------GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVC 134 (171)
T ss_dssp -------CC----HH-HHTCHHHHHHHHTT---TCSEEEEE-------SCGGGCCCEEEECSSGGGGGGGCSSCEEEEEC
T ss_pred -------CC----hh-hhhCHHHHHHhhCC---CCCEEEEC-------CcCCCCCcEEEEEecccCCCccCccceEEEEe
Confidence 00 00 01123455554 32 45777766 29999999999999999999873 22
Q ss_pred eCCCC---CCCHHHHHHHHHHHHHHHhcC
Q psy2520 154 DEPTT---GLDSFSASKLIRMMRELTSQR 179 (290)
Q Consensus 154 DEPts---gLD~~~~~~i~~~l~~l~~~~ 179 (290)
|.|.. -+|......+.+++.+...+.
T Consensus 135 ~~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 135 DERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp SSCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cCCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 44432 234455677777776654553
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=5.2e-15 Score=136.36 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=79.7
Q ss_pred EEEECCCCChHHHHHHHHHc-CCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHHHHHHhcCchh
Q psy2520 16 VAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR 92 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G-~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~ 92 (290)
+.|.||||+|||||+++|++ +..|. .|.+.++|.+... ..+..+++++|.+.+....+ + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~----~~~-- 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D---M----GNN-- 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC-------------C--
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h---c----CCc--
Confidence 89999999999999999999 67774 6999999987643 23456888888654321111 0 0 000
Q ss_pred hhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2520 93 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l 172 (290)
... .+.+.++.+......+.. . .||| +..+|+++|+|||++ ||+.++..+++.|
T Consensus 105 -~~~----~~~~~i~~~~~~~~~~~~--------~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~l 158 (354)
T 1sxj_E 105 -DRI----VIQELLKEVAQMEQVDFQ--------D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTM 158 (354)
T ss_dssp -CHH----HHHHHHHHHTTTTC--------------------------------CCEEEEEECTTS-SCHHHHHHHHHHH
T ss_pred -chH----HHHHHHHHHHHhcccccc--------c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHH
Confidence 000 122233332211111111 0 1566 788999999999999 9999999999999
Q ss_pred HHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 173 RELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 173 ~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
.+. . .+.++|++||++......+.+|+..
T Consensus 159 e~~-~-~~~~~Il~t~~~~~l~~~l~sR~~~ 187 (354)
T 1sxj_E 159 EKY-S-KNIRLIMVCDSMSPIIAPIKSQCLL 187 (354)
T ss_dssp HHS-T-TTEEEEEEESCSCSSCHHHHTTSEE
T ss_pred Hhh-c-CCCEEEEEeCCHHHHHHHHHhhceE
Confidence 986 3 3689999999975433345555533
No 134
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.54 E-value=8.8e-15 Score=136.98 Aligned_cols=75 Identities=29% Similarity=0.402 Sum_probs=66.3
Q ss_pred CCCCChHHHHHH------HHHHHHHhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcC
Q psy2520 127 KVVLSGGERKRL------SFATELLTD-PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 199 (290)
Q Consensus 127 ~~~LSgGqrqRv------~ia~aL~~~-p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d 199 (290)
+..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|+++ .+ +.+||++||++ . +..+||
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~-~~~vi~~th~~-~-~~~~~d 353 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV-KS-IPQMIIITHHR-E-LEDVAD 353 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC-CS-CSEEEEEESCG-G-GGGGCS
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh-cc-CCeEEEEEChH-H-HHhhCC
Confidence 356999999988 567888999 9999999999999999999999999987 43 46899999996 3 678999
Q ss_pred eEEEEe
Q psy2520 200 KIILLA 205 (290)
Q Consensus 200 ~v~~l~ 205 (290)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.53 E-value=2.2e-16 Score=144.17 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=81.6
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEE---CCEecCcc---cc-ccEEEEccCCCCC-----CCCCH
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV---NGKPVEGK---FR-SACGFMYQHDLFS-----PSLTV 77 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i---~G~~~~~~---~~-~~ig~v~Q~~~~~-----~~lTv 77 (290)
+.+|++++|+||||||||||+|+|+ +.+|. +|+|.+ +|++++.. ++ +.+||++|.+.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 4579999999999999999999999 88884 799999 99887541 22 3689999998553 67899
Q ss_pred HHHH--HHH------HHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHH
Q psy2520 78 YEHL--YFM------ALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFAT 142 (290)
Q Consensus 78 ~e~l--~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~ 142 (290)
|++ .|. +..+.- ....+....+.++++.++|.+ ..++. +..|||.++|++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~--~~~~e~~~~v~~~l~~~~L~~~~~~~~--------~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDC--THTNEPGCAVKEAVKNGEISCERYKSY--------LKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTC--CSSSCTTCHHHHHHHTTSSCHHHHHHH--------HHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCC--CCCCCCCCHHHHHHHcCCCCHHHHHHH--------HHHHHHHHHHHHHHhc
Confidence 887 443 112110 001111245788999999986 66776 3449999999999987
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.52 E-value=1.5e-15 Score=144.30 Aligned_cols=170 Identities=18% Similarity=0.174 Sum_probs=96.5
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
+.+++++++.|+.++|+|+|||||||||++|+|..+. +.+.+.+ .+...+|++++++. ..++++++.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~---------i~~~~ft-Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPK---------IAPYPFT-TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCE---------ECCCTTC-SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCcc---------ccCcccc-eecceeeEEEecCc--ceEEEEeccc
Confidence 5689999999999999999999999999999997431 2222221 11223444444320 0011111100
Q ss_pred H---HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 83 F---MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 83 ~---~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
+ ......... ......+++..++..+++. +.. +.+||+|++|++++|++|+..|.++++ +.
T Consensus 215 li~~a~~~~~L~~-~fl~~~era~~lL~vvDls---~~~--------~~~ls~g~~el~~la~aL~~~P~ILVl----NK 278 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIARTRVLLYVLDAA---DEP--------LKTLETLRKEVGAYDPALLRRPSLVAL----NK 278 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSSSEEEEEEETT---SCH--------HHHHHHHHHHHHHHCHHHHHSCEEEEE----EC
T ss_pred cccchhhhhhhhH-HHHHHHHHHHhhhEEeCCc---cCC--------HHHHHHHHHHHHHHhHHhhcCCEEEEE----EC
Confidence 0 000000000 0000001112233333443 333 344999999999999999999999999 99
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 201 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v 201 (290)
+|+... ..++.+++..++.|.+++++|-.....+.++++.+
T Consensus 279 lDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 279 VDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred CChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 999877 44455544435557777766533233355555443
No 137
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.52 E-value=1.8e-17 Score=153.62 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=103.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCC-
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSL- 75 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~l- 75 (290)
++|+.+.+|++++|+||||||||||+++|+|++.|. +|+|.+.|.++.. ..+..++|++|++.+++..
T Consensus 47 ~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 123 (337)
T 2qm8_A 47 AVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPS 123 (337)
T ss_dssp HHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECC
T ss_pred hCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccC
Confidence 578889999999999999999999999999999884 7999999988742 2456799999998776532
Q ss_pred -----------CHHHHHHHHHH-----------------------------hcCchhhhHHH-HHHHHHHHHHHcCCCCc
Q psy2520 76 -----------TVYEHLYFMAL-----------------------------LKLDRRVKAYQ-RIALINSLLIELGLMNS 114 (290)
Q Consensus 76 -----------Tv~e~l~~~~~-----------------------------~~~~~~~~~~~-~~~~~~~~l~~~~l~~~ 114 (290)
++.|.+..... ..........+ ....+.+....+.+ +.
T Consensus 124 ~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvl-NK 202 (337)
T 2qm8_A 124 PSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAV-NK 202 (337)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEE-EC
T ss_pred cccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEE-Ec
Confidence 13333211100 00000000000 00001111111111 22
Q ss_pred cCcccCCcCCCCCCCCChHHHHHHHHHHHHHh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy2520 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLT------DPALLLCDEPTTGLDSFSASKLIRMMRELT 176 (290)
Q Consensus 115 ~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~------~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 176 (290)
.|... ...+|+|++|++..+++++. .|++++ +|++|......+++.|.++.
T Consensus 203 ~Dl~~-------~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 203 ADDGD-------GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CSTTC-------CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred hhccC-------chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 23110 12389999999999999887 688876 99999999999999998873
No 138
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.51 E-value=4e-15 Score=122.10 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=35.0
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE-EEEEeCCC
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT-VLCTIHQP 190 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t-ii~~tH~~ 190 (290)
.+|++|++|||++ ++...+..+++++..+. +.|++ +|++||.+
T Consensus 82 ~~~~lLilDE~~~-~~~~~~~~l~~li~~~~-~~g~~~iiits~~~ 125 (149)
T 2kjq_A 82 FEAEYLAVDQVEK-LGNEEQALLFSIFNRFR-NSGKGFLLLGSEYT 125 (149)
T ss_dssp GGCSEEEEESTTC-CCSHHHHHHHHHHHHHH-HHTCCEEEEEESSC
T ss_pred hCCCEEEEeCccc-cChHHHHHHHHHHHHHH-HcCCcEEEEECCCC
Confidence 4689999999998 66666888999999984 45777 88888864
No 139
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.50 E-value=4.4e-16 Score=141.42 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=84.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH----
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL---- 86 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~---- 86 (290)
.++.+++|.||+|||||||.+.|++++.+ .|. . ++.+.+|+|++.+++. ++.+|+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g~----------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KYG----------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HHG----------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cCC----------C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 46889999999999999999999998875 230 1 3346666999877754 88888887521
Q ss_pred hc--C-chhhhHHHHHHHHHHHHHHcCCC--Cc--cCcccCCcCCCCCCCCChHHHHHHHHH--HHHHhCCCeEEEeCCC
Q psy2520 87 LK--L-DRRVKAYQRIALINSLLIELGLM--NS--QHTRIGSSSITQKVVLSGGERKRLSFA--TELLTDPALLLCDEPT 157 (290)
Q Consensus 87 ~~--~-~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~~v~~~~~~~~~~LSgGqrqRv~ia--~aL~~~p~llllDEPt 157 (290)
+. . +.... ...+.+.++.+.-. .. ....++.. ...+||||+||+++| +++ +|+|||+||||
T Consensus 93 ~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~y----~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~ 162 (290)
T 1odf_A 93 LQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPKY----DKSQFKGEGDRCPTGQKIKL--PVDIFILEGWF 162 (290)
T ss_dssp GSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEECCE----ETTHHHHTCEECSSCEEEES--SCSEEEEEESS
T ss_pred hhhccCcchhH----HHHHHHHHHHhhccCccccCcceeeccC----ccccCCccccccccccceEc--CCCEEEEeCcc
Confidence 10 0 11111 22344556655332 00 00001100 235999999999997 555 99999999999
Q ss_pred CCCCHHH
Q psy2520 158 TGLDSFS 164 (290)
Q Consensus 158 sgLD~~~ 164 (290)
+++|+..
T Consensus 163 ~~ld~~~ 169 (290)
T 1odf_A 163 LGFNPIL 169 (290)
T ss_dssp TTCCCCC
T ss_pred ccCCccc
Confidence 9999863
No 140
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.49 E-value=7.4e-17 Score=153.49 Aligned_cols=127 Identities=18% Similarity=0.113 Sum_probs=88.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEc---------cCCCC--
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMY---------QHDLF-- 71 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~---------Q~~~~-- 71 (290)
.+|++++|+|||||||||||++|+|+++|. +|+|.+.|.++.. .+...+++.| |++.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~ 241 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVM 241 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEE
Confidence 689999999999999999999999998874 7999999887642 1334566655 88654
Q ss_pred CCC----CCHHHHHHHHHHhcC-chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 72 SPS----LTVYEHLYFMALLKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 72 ~~~----lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
++. .|+.+++.++..-+. ......... ..+.+.|..+++.... . +..|||||+|| ||++|+.
T Consensus 242 vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~-~~~i~rL~~lgl~~~~--~--------~~~LSgg~~QR--LaraL~~ 308 (418)
T 1p9r_A 242 VGEIRDLETAQIAVQASLTGHLVMSTLHTNTA-VGAVTRLRDMGIEPFL--I--------SSSLLGVLAQR--LVRTLCP 308 (418)
T ss_dssp ESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS-HHHHHHHHHHTCCHHH--H--------HHHEEEEEEEE--EEEEECT
T ss_pred EcCcCCHHHHHHHHHHHHhCCCcccccchhhH-HHHHHHHHHcCCcHHH--H--------HHHHHHHHHHH--hhhhhcC
Confidence 343 588898887642111 000000000 1122346677886543 3 34599999999 9999999
Q ss_pred CCCeEEE
Q psy2520 147 DPALLLC 153 (290)
Q Consensus 147 ~p~llll 153 (290)
+|++..-
T Consensus 309 ~p~~~~~ 315 (418)
T 1p9r_A 309 DCKEPYE 315 (418)
T ss_dssp TTCEEEE
T ss_pred CCCccCC
Confidence 9998753
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.48 E-value=5e-17 Score=158.34 Aligned_cols=169 Identities=14% Similarity=0.149 Sum_probs=104.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe-cCccccccEEEEccCCC-------------
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP-VEGKFRSACGFMYQHDL------------- 70 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~-~~~~~~~~ig~v~Q~~~------------- 70 (290)
++++.+++|+.++|+|||||||||||++|+|+++|+ +|.|+++|.+ +...-...++++.|...
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~ 328 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRA 328 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHT
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHH
Confidence 466778999999999999999999999999999884 7999998865 22111234555554322
Q ss_pred ---------CCCCCCHHHHHHHHHHhcCc----hhhhHHHHHHHHHHHHHHcCCC-----C----ccCcccCCcCCCCCC
Q psy2520 71 ---------FSPSLTVYEHLYFMALLKLD----RRVKAYQRIALINSLLIELGLM-----N----SQHTRIGSSSITQKV 128 (290)
Q Consensus 71 ---------~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~-----~----~~~~~v~~~~~~~~~ 128 (290)
+++.++..|++.+....... ..... ..+.++++++... . ..+-.+.. ..
T Consensus 329 ~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha----~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~-----~~ 399 (511)
T 2oap_1 329 ALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHA----GDINQMVYRLESEPLKVPRSMLQFLDIALVQ-----TM 399 (511)
T ss_dssp TGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEEC----SSHHHHHHHHHSTTTCCCGGGGGGCCEEEEE-----EE
T ss_pred hhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccccc----CCHHHHHHHHHhcccccHHHHHhhccEEEEE-----EE
Confidence 22344555544433222110 00000 0122333333221 1 11100000 22
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE--EeCCCcHHHHhhcC
Q psy2520 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC--TIHQPSSELIDMFD 199 (290)
Q Consensus 129 ~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~--~tH~~~~~~~~~~d 199 (290)
.+|+||+||++++. + | |+|||+.....+++.|.++ ...+.|+++ +||++ .++...|+
T Consensus 400 ~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~-~~~~~tii~~~~sH~l-~ei~~~~g 458 (511)
T 2oap_1 400 WVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKW-DPKEDKHIEVSMPKKL-EKMADFLG 458 (511)
T ss_dssp EESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEE-ETTTTEEEECSCCTHH-HHHHHHHT
T ss_pred EEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEE-cccCCEEEEcccHHHH-HHHHHHcC
Confidence 47999999987752 2 7 9999998888888888777 445789875 89997 46777764
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.43 E-value=2.6e-16 Score=135.46 Aligned_cols=163 Identities=17% Similarity=0.104 Sum_probs=86.9
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 89 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~ 89 (290)
.++|++++|+||||||||||+++|+|+++|. | ..+|+|++++..+.. +..+++........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C--------------CceEEEecCCCcCCH-HHHHHhcccccCCC
Confidence 4689999999999999999999999998762 2 124455544332221 11111110000000
Q ss_pred chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHH-HHHHhCCCeEEEeCCCCCCCHHHHHHH
Q psy2520 90 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA-TELLTDPALLLCDEPTTGLDSFSASKL 168 (290)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia-~aL~~~p~llllDEPtsgLD~~~~~~i 168 (290)
+...... .+.+.+..+...+.....+.+. ...+|+||+||++++ ++++.++.++++|||..
T Consensus 80 ~~~~~~~----~~~~~l~~l~~~~~i~~p~~d~----~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~---------- 141 (208)
T 3c8u_A 80 PETFDFE----GFQRLCHALKHQERVIYPLFDR----ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW---------- 141 (208)
T ss_dssp GGGBCHH----HHHHHHHHHHHCSCEEEEEEET----TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG----------
T ss_pred CchhhHH----HHHHHHHHHhcCCceecccCCc----cccCCCCCceEEcCCCcEEEECCceeccCCchh----------
Confidence 0111111 1122222221111111112221 234899999999998 88888888888888841
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHH
Q psy2520 169 IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 221 (290)
Q Consensus 169 ~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 221 (290)
..+... --.+|++.+.....+.+...|. +..|. +.+++...
T Consensus 142 -~~l~~~----~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~ 182 (208)
T 3c8u_A 142 -RDLTAI----WDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVAR 182 (208)
T ss_dssp -GGGGGT----CSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHH
T ss_pred -HHHHHh----cCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHH
Confidence 111222 1357777777543356666662 34454 45555543
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=1.3e-16 Score=150.58 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=115.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcC------------CCCCCCCccEEEECCEecCc-----cccccE---EEEccC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQR------------LPDDCIIDGDIRVNGKPVEG-----KFRSAC---GFMYQH 68 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~------------~~~~~~~~G~I~i~G~~~~~-----~~~~~i---g~v~Q~ 68 (290)
.+.+|..++|+|+||||||||+|+|+|. ..| .+|.|.++|..+.. ..++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 5678999999999999999999999992 334 48999998854421 112223 467777
Q ss_pred CCCCCCCCHHHHH--HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 69 DLFSPSLTVYEHL--YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 69 ~~~~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
+.++...+..|++ .|...++.. +.++..+...+ +.. +..+||+.
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~~--------i~~v~~~~------------ 138 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DAE--------IIHVEGDV------------ 138 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TTC--------SSCCSSSS------------
T ss_pred cccccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cce--------eeeecccc------------
Confidence 7787777766655 333322210 01111111111 222 23366653
Q ss_pred CC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE-EEeCC-eEEEEcCH
Q psy2520 147 DP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII-LLADS-RTAFIGSK 215 (290)
Q Consensus 147 ~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~-~l~~G-~i~~~g~~ 215 (290)
+| +++++|||+.++|+....+.++.+.......|.|++ +|.. ..+..+||++. +|.+| ++++.|+.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCC
Confidence 89 999999999999999999999999887223467754 9996 57889999999 99999 88877654
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.40 E-value=9.1e-15 Score=133.23 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=67.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEE---CCEecCcc---c-cccEEEEccCCC-----------
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV---NGKPVEGK---F-RSACGFMYQHDL----------- 70 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i---~G~~~~~~---~-~~~ig~v~Q~~~----------- 70 (290)
.+.+|++++|+||||||||||||+|+|+.+|. +|+|.+ +|++++.. + .+.+|||+|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 45679999999999999999999999999984 799999 89887541 2 236899999874
Q ss_pred -----CCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcc
Q psy2520 71 -----FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTR 118 (290)
Q Consensus 71 -----~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 118 (290)
++|.+|+ +|+.|....+. .+...++.++++.++|. +..++.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~~~~------~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDCNHV------DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTCCSS------SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCCcCC------CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5888999 98887532111 11124567899999995 566665
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.36 E-value=1.3e-16 Score=143.63 Aligned_cols=136 Identities=15% Similarity=0.187 Sum_probs=91.7
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc----ccccEEEEccCC-CCCCCCCHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQHD-LFSPSLTVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~----~~~~ig~v~Q~~-~~~~~lTv~e 79 (290)
++++.+.+| ++|+||||||||||+++|+|...+ |.|.++|.++... ..+.++++||.. ...|.+++.|
T Consensus 38 ~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~D 110 (274)
T 2x8a_A 38 ALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFD 110 (274)
T ss_dssp HTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeee
Confidence 456778888 999999999999999999998775 7999999876432 345688888863 4556666666
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC-
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT- 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts- 158 (290)
++.+....+. ... .. .+....++. +..|||||+||+.|++|+.++|++| |||+.
T Consensus 111 eid~~~~~r~-----~~~----~~------~~~~~~~~~--------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r 165 (274)
T 2x8a_A 111 EVDALCPRRS-----DRE----TG------ASVRVVNQL--------LTEMDGLEARQQVFIMAATNRPDII--DPAILR 165 (274)
T ss_dssp TCTTTCC------------------------CTTHHHHH--------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHS
T ss_pred hhhhhhcccC-----CCc----ch------HHHHHHHHH--------HHhhhcccccCCEEEEeecCChhhC--CHhhcC
Confidence 6654321110 000 00 011222333 2339999999999999999999985 99864
Q ss_pred -----------CCCHHHHHHHHHHH
Q psy2520 159 -----------GLDSFSASKLIRMM 172 (290)
Q Consensus 159 -----------gLD~~~~~~i~~~l 172 (290)
--|...+.+|++.+
T Consensus 166 ~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 166 PGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp TTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23566666665543
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.34 E-value=7.8e-15 Score=134.05 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=60.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEE---CCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRV---NGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i---~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
.+|+++||+||||||||||+++|+|++. |+ +|+|.+ +|.......++.+|++ |...+++.+|+.+++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~ 153 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVS 153 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHH
Confidence 7899999999999999999999999887 74 799999 8876543344568888 8777778899999998865
Q ss_pred Hh
Q psy2520 86 LL 87 (290)
Q Consensus 86 ~~ 87 (290)
.+
T Consensus 154 ~l 155 (308)
T 1sq5_A 154 DL 155 (308)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.33 E-value=3.2e-14 Score=130.06 Aligned_cols=118 Identities=20% Similarity=0.221 Sum_probs=66.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEE---CCEecCc--c-ccccEEEEccCCCCCC----CCCH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV---NGKPVEG--K-FRSACGFMYQHDLFSP----SLTV 77 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i---~G~~~~~--~-~~~~ig~v~Q~~~~~~----~lTv 77 (290)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+.++. . ++..+||++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 456789999999999999999999999999884 799999 8887654 1 2222799999987655 6889
Q ss_pred HHHHH--HHH-H-h----cCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHH
Q psy2520 78 YEHLY--FMA-L-L----KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR 137 (290)
Q Consensus 78 ~e~l~--~~~-~-~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqR 137 (290)
|++. |.. . . +........+....+.++++.++|.+...... ..|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y--------~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY--------VEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH--------HHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH--------HHHHHHHhhc
Confidence 8883 321 0 1 00000000111234678999999976444332 2377787763
No 148
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.31 E-value=3.1e-13 Score=117.71 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=50.5
Q ss_pred HHHHHHHH--hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHH-------HHhhcCeEEEEeC
Q psy2520 138 LSFATELL--TDPALLLCDEPTTGL--DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE-------LIDMFDKIILLAD 206 (290)
Q Consensus 138 v~ia~aL~--~~p~llllDEPtsgL--D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~-------~~~~~d~v~~l~~ 206 (290)
...++.++ .+|+++++|+|++.+ |+....+++..|.+++++.|.|||+++|..... +.+++|.++.|+.
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344443 689999999999988 665566666777776567799999999986421 4578999999964
No 149
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.31 E-value=4.4e-15 Score=137.02 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=95.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC----CCCCCCccEEEECCEecCc---c-ccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL----PDDCIIDGDIRVNGKPVEG---K-FRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~----~~~~~~~G~I~i~G~~~~~---~-~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
+.++|+||||+|||||+++|+|.+ .+ ++|.+..++.++.. . .+..|+|+.|.+.+.+ ++.|++....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~---~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~ 126 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHV---TSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAI 126 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEE---EETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEE---EechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHH
Confidence 789999999999999999999987 33 36777766655432 1 2457999999877765 7888885543
Q ss_pred HhcCchh-hhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 86 LLKLDRR-VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
......- .......+.+...+..+++.. +.+. +..||+|++||+.++ .+||+.+
T Consensus 127 ~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~--------~~~Ls~~l~sR~~l~----------------~~Ld~~~ 181 (334)
T 1in4_A 127 EDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR--------SGLLSSPLRSRFGII----------------LELDFYT 181 (334)
T ss_dssp HTSCCCC---------------CCCEEEE-EESC--------GGGSCHHHHTTCSEE----------------EECCCCC
T ss_pred HhcccceeeccCcccccccccCCCeEEEE-ecCC--------cccCCHHHHHhcCce----------------eeCCCCC
Confidence 3221000 001111122334444455533 4444 345999999998655 7888888
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCe
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 200 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~ 200 (290)
..++.++|++.++..+ ++|+. +.+..++++
T Consensus 182 ~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 182 VKELKEIIKRAASLMD-----VEIED-AAAEMIAKR 211 (334)
T ss_dssp HHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHHh
Confidence 9999999998865444 35664 345556654
No 150
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.30 E-value=2.4e-16 Score=135.07 Aligned_cols=57 Identities=14% Similarity=0.270 Sum_probs=43.2
Q ss_pred HHH-HHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 140 FAT-ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 140 ia~-aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
.++ +++.+|++++|||||+++|..+...|.+.|.....+ +.+.|.+ ..||+++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhcc-----CCceEEEECCC
Confidence 345 677888888999999999999999999999887433 2334521 56899988864
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.25 E-value=3.4e-12 Score=116.60 Aligned_cols=112 Identities=14% Similarity=0.230 Sum_probs=78.8
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
+++...+|++++|+|||||||||++..|++.+.+. .|+|.+.+.+... . ...+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r-----~-------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR-----A-------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC-----H-------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccccc-----H-------------HHHHH-----
Confidence 45556789999999999999999999999998773 5788876655311 0 00111
Q ss_pred HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHH---HHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 86 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL---SFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv---~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+..+.+.+++.. ...+|+|+.+++ +|++++..+|+++|+|+|.. .
T Consensus 151 ----------------L~~~~~~~gl~~-------------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~ 198 (306)
T 1vma_A 151 ----------------LKIWGERVGATV-------------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---L 198 (306)
T ss_dssp ----------------HHHHHHHHTCEE-------------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---C
T ss_pred ----------------HHHHHHHcCCcE-------------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---h
Confidence 123444555532 123789999999 89999999999999999974 3
Q ss_pred HHHHHHHHHHHHH
Q psy2520 163 FSASKLIRMMREL 175 (290)
Q Consensus 163 ~~~~~i~~~l~~l 175 (290)
.....+++.|+++
T Consensus 199 ~~~~~l~~eL~~l 211 (306)
T 1vma_A 199 HTKKNLMEELRKV 211 (306)
T ss_dssp SCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3445555555554
No 152
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.23 E-value=1.7e-11 Score=111.44 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=98.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCc
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD 90 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~ 90 (290)
.+|++++|+|||||||||++..|++.+.+. +| +++.++.++.. ..++.|++....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G--------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH--------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC--------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 479999999999999999999999998752 46 23666666542 234555554322
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2520 91 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~ 170 (290)
+..++.-.. ..+. ..-+.+|++ +.+|+++|+| |+|+|+.....+.+
T Consensus 158 ----------------~~~gl~~~~-------------~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~e 203 (296)
T 2px0_A 158 ----------------ELLQAPLEV-------------CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDE 203 (296)
T ss_dssp ----------------TTTTCCCCB-------------CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHH
T ss_pred ----------------HhcCCCeEe-------------cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHH
Confidence 112322110 0222 333555554 5999999999 99999877665555
Q ss_pred HHHHHH--hcCCcEEEE-EeCCCcHHHHhhcCeEEEEeCCeEEEEc---C--HHHHHHHHHHCCCCC
Q psy2520 171 MMRELT--SQRKKTVLC-TIHQPSSELIDMFDKIILLADSRTAFIG---S--KDAALAFLESQGYPC 229 (290)
Q Consensus 171 ~l~~l~--~~~g~tii~-~tH~~~~~~~~~~d~v~~l~~G~i~~~g---~--~~~~~~~~~~~g~~~ 229 (290)
+.+-+. ...+.++++ ++|.. .++.++++++..+..+.++..- + ...++......|.|.
T Consensus 204 l~~~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVltk~D~~~~~g~~~~~~~~~~~pi 269 (296)
T 2px0_A 204 LKETIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGV 269 (296)
T ss_dssp HHHHSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEECTTTCSCCHHHHHHHHTCSCCC
T ss_pred HHHHHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEeCCCcccchhHHHHHHHHHCcCE
Confidence 444331 112334444 48875 4688888887777777777532 1 124555556666554
No 153
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.22 E-value=4.9e-11 Score=114.34 Aligned_cols=173 Identities=9% Similarity=0.115 Sum_probs=103.8
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc-EEEECCEecCc-ccccc-EEEEccCCCCCCCCCHHHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG-DIRVNGKPVEG-KFRSA-CGFMYQHDLFSPSLTVYEHLYFM 84 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G-~I~i~G~~~~~-~~~~~-ig~v~Q~~~~~~~lTv~e~l~~~ 84 (290)
+-+.+|+++.|.|++|+|||||+..+++...+. .| .|.|.+.+... .+..+ ++.... ... +.+
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~~l--- 263 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-QNL--- 263 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-HHH---
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-HHH---
Confidence 447899999999999999999999988765431 23 34433222111 00000 000000 000 000
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH--hCCCeEEEeCCCCCCC-
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL--TDPALLLCDEPTTGLD- 161 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~--~~p~llllDEPtsgLD- 161 (290)
+.. .... ....++.+.+..++..+..-.. ...+|.++.+ +.++.++ .+|+++++|+++...+
T Consensus 264 ---~~g-~l~~-~~~~~~~~a~~~l~~~~l~i~d--------~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 264 ---RTG-KLTP-EDWGKLTMAMGSLSNAGIYIDD--------TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp ---HTS-CCCH-HHHHHHHHHHHHHHSSCEEEEC--------CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred ---hcC-CCCH-HHHHHHHHHHHHHhcCCEEEEC--------CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 000 0111 1122344455555443333222 2348999886 5667776 6899999999998774
Q ss_pred -------HHHHHHHHHHHHHHHhcCCcEEEEEeC---------C--Cc-------HHHHhhcCeEEEEeCCeE
Q psy2520 162 -------SFSASKLIRMMRELTSQRKKTVLCTIH---------Q--PS-------SELIDMFDKIILLADSRT 209 (290)
Q Consensus 162 -------~~~~~~i~~~l~~l~~~~g~tii~~tH---------~--~~-------~~~~~~~d~v~~l~~G~i 209 (290)
......+.+.|+.++++.|.+||+++| + |. ..+...||.|++|+.++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 334467888889887777999999999 2 32 036778999999987764
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.20 E-value=5.4e-11 Score=108.04 Aligned_cols=128 Identities=18% Similarity=0.102 Sum_probs=87.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++++. +|++++|+|+||+||||++..|++.+.+. .|+|.+.+.++.... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~~-----------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPA-----------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHH-----------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccHh-----------------HH-HHH--
Confidence 367777 99999999999999999999999998763 588888765542100 00 000
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC-CCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP-TTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP-tsgLD~ 162 (290)
..+.+..++.-..... ..+-.+.+|.+|+.+...+++++|+||| +.++|.
T Consensus 146 -------------------~~~~~~~~l~~~~~~~----------~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~ 196 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVMD----------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDE 196 (295)
T ss_dssp -------------------HHHHHHHTCCEEECCT----------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCH
T ss_pred -------------------HHhcccCCeEEEEcCC----------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccH
Confidence 0112334543221100 1234456789999998899999999999 999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEe
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTI 187 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~t 187 (290)
.....+.++.+.+ . ...+++++.
T Consensus 197 ~~~~~l~~~~~~~-~-~~~~~lv~~ 219 (295)
T 1ls1_A 197 PLMGELARLKEVL-G-PDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHHHH-C-CSEEEEEEE
T ss_pred HHHHHHHHHhhhc-C-CCEEEEEEe
Confidence 9888888888776 3 344555443
No 155
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.20 E-value=2.8e-15 Score=130.78 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=23.3
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHH-cCCCC
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALS-QRLPD 39 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~-G~~~~ 39 (290)
..++||++++|++++|+||||||||||+++|+ |++++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 46899999999999999999999999999999 99754
No 156
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.19 E-value=2.4e-12 Score=108.69 Aligned_cols=144 Identities=19% Similarity=0.154 Sum_probs=76.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCC--C------CccEEEECCEecCc------cccccEEEEccCCC-CCCCCCHHH
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPDDC--I------IDGDIRVNGKPVEG------KFRSACGFMYQHDL-FSPSLTVYE 79 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~~~--~------~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~-~~~~lTv~e 79 (290)
.++|+|+||||||||++.++|...+.. . .+|+|.++|+++.. ...+..++++|... ....++|++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 689999999999999999999875410 0 36899999986531 11122222222100 000011111
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
..... ..........++ ....-....--.+++ ..+|..-..+.+.+|++|+.+|+++++| ||+
T Consensus 111 ~~~~~---------s~~~~~~~~~~~-~~~~~~~~~i~~v~n-----K~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IAKHL---------TYENVERWLKEL-RDHADSNIVIMLVGN-----KSDLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TTCHH---------HHHTHHHHHHHH-HHHSCTTCEEEEEEE-----CGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcCHH---------HHHHHHHHHHHH-HHhcCCCCcEEEEEE-----CcccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 10000 000000000111 111000000001111 1123322234578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2520 160 LDSFSASKLIRMMREL 175 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l 175 (290)
+|..+..++++.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988753
No 157
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.19 E-value=7.9e-13 Score=112.30 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=48.3
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
|+.+.+|++++|+||||||||||+++|+|+++ .+.+.+..+.. ..+..++|+||++.+++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 57788999999999999999999999999863 35666655543 2345689999987665555554443
No 158
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.13 E-value=1.2e-14 Score=130.35 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=79.2
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCC-CCCCCCCHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHD-LFSPSLTVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~-~~~~~lTv~e 79 (290)
++++.+.+| ++|+||||||||||+++|++... .|.|.+++.++.. ...+.++++||.. ...+.+++.|
T Consensus 67 ~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iD 139 (278)
T 1iy2_A 67 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 139 (278)
T ss_dssp HTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEE
T ss_pred HcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehh
Confidence 456777888 89999999999999999999875 4899998876532 1234577888874 3566778888
Q ss_pred HHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 80 HLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
++......+... ..........+..++. .|||||+||+.+++++..+|++
T Consensus 140 eid~l~~~~~~~~~~~~~~~~~~~~~ll~---------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 140 EIDAVGRKRGSGVGGGNDEREQTLNQLLV---------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp THHHHHCC--------CHHHHHHHHHHHH---------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred hhHhhhcccccccCCcchHHHHHHHHHHH---------------------HHhCCCCCCCEEEEEecCCchh
Confidence 885433211100 0000111222333332 2899999999999999999976
No 159
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.13 E-value=2.5e-12 Score=124.85 Aligned_cols=175 Identities=15% Similarity=0.093 Sum_probs=102.0
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHc--CCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCC--CHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSL--TVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G--~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~l--Tv~e 79 (290)
.+++.+.++..++|.|++||||||++++|.. +..+ ..|++.+.+.+... .+ +....+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~---~p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA---QPEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC---CTTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC---CCceEEEEEECCchhhh--------hhhccCCcccceeec
Confidence 4788889999999999999999999998875 3333 24777776666532 11 110011111 1222
Q ss_pred HHHHHHH-hcCchhhhHHHHHHHHHHHHHHcCCCCccCc--ccCCcCCCCCCCCChHHHHHH----------HHHHHHHh
Q psy2520 80 HLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHT--RIGSSSITQKVVLSGGERKRL----------SFATELLT 146 (290)
Q Consensus 80 ~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~v~~~~~~~~~~LSgGqrqRv----------~ia~aL~~ 146 (290)
+...+.. +.. ...+..++ .+++...|+.+.... .+. ..+|+||+|+. .+++++..
T Consensus 228 d~~~a~~~L~~----~~~EmerR-~~ll~~~Gv~~i~~yn~~~~-------~~~s~G~~~~~~~~~pg~~~~~~a~~l~~ 295 (512)
T 2ius_A 228 DMKDAANALRW----CVNEMERR-YKLMSALGVRNLAGYNEKIA-------EADRMMRPIPDPYWKPGDSMDAQHPVLKK 295 (512)
T ss_dssp SHHHHHHHHHH----HHHHHHHH-HHHHHHTTCSSHHHHHHHHH-------HHHHTTCCCBCTTC---------CCBCCC
T ss_pred CHHHHHHHHHH----HHHHHHHH-HHHHHHcCCccHHHHHHHHH-------HHhhcCCcccccccccccchhcccccccc
Confidence 2222111 110 01111122 367888888765332 111 13788887752 35566677
Q ss_pred CCC-eEEEeCCCCCCCHHHHHHHHHHHHHHH---hcCCcEEEEEeCCCcH------HHHhhcCeEEE
Q psy2520 147 DPA-LLLCDEPTTGLDSFSASKLIRMMRELT---SQRKKTVLCTIHQPSS------ELIDMFDKIIL 203 (290)
Q Consensus 147 ~p~-llllDEPtsgLD~~~~~~i~~~l~~l~---~~~g~tii~~tH~~~~------~~~~~~d~v~~ 203 (290)
.|. ++++||+++-++.. ...+.+.|.+++ +..|.++|++||++.. ....+.+||.+
T Consensus 296 lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred CCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 898 89999999988743 234455555442 3348899999999851 12345566665
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.12 E-value=1.5e-14 Score=127.72 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=81.1
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCC-CCCCCCCHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHD-LFSPSLTVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~-~~~~~lTv~e 79 (290)
++++.+.+| ++|+||||||||||+++|++... .|.|.++|.++.. ...+.++++||.. ...+.+++.|
T Consensus 43 ~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~D 115 (254)
T 1ixz_A 43 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 115 (254)
T ss_dssp HTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred HcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEeh
Confidence 456777888 89999999999999999999875 4899998876532 1234577888863 3556677778
Q ss_pred HHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
++......+... ..........+.+++. .|||||+||+.+++++..+|++ +|++.
T Consensus 116 eid~l~~~~~~~~~~~~~~~~~~~~~ll~---------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 116 EIDAVGRKRGSGVGGGNDEREQTLNQLLV---------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp THHHHHC---------CHHHHHHHHHHHH---------------------HHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred hhhhhhcccCccccccchHHHHHHHHHHH---------------------HHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 874432211100 0001111222333332 2899999999999999999987 56543
No 161
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.10 E-value=1e-10 Score=108.68 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH---HhcCCcEEEEEeCCCcH-----
Q psy2520 136 KRLSFATELLTD--PALLLCDEPTTGL----------DS---FSASKLIRMMREL---TSQRKKTVLCTIHQPSS----- 192 (290)
Q Consensus 136 qRv~ia~aL~~~--p~llllDEPtsgL----------D~---~~~~~i~~~l~~l---~~~~g~tii~~tH~~~~----- 192 (290)
+-+.++++++.. |+++++|||++.+ |+ ...+.+.+.++++ +++.|.|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 446678888755 9999999999988 33 1222334444444 35668999999996421
Q ss_pred ----------HHHhhcCeEEEEeCCeEEEEc
Q psy2520 193 ----------ELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 193 ----------~~~~~~d~v~~l~~G~i~~~g 213 (290)
.+..+||.++.+..++++..|
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 145789999988876654443
No 162
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.09 E-value=1.6e-11 Score=118.38 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=44.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE 55 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~ 55 (290)
.++||++++ ++++|+|||||||||||++|+|+++|+ +|+|.++|+++.
T Consensus 21 ~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~ 68 (483)
T 3euj_A 21 FARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSC
T ss_pred cceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEcc
Confidence 479999999 999999999999999999999999995 799999998774
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.00 E-value=1.1e-11 Score=108.55 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=41.8
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------------cccccEEEEccC
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------------KFRSACGFMYQH 68 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------------~~~~~ig~v~Q~ 68 (290)
++++.+ ++++|+|||||||||||++|+|++.|+ +|+|.++|.++.. ..+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566666 799999999999999999999999985 7999999988721 135679999984
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.00 E-value=4.3e-12 Score=125.87 Aligned_cols=153 Identities=20% Similarity=0.125 Sum_probs=93.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCC--------------
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL-------------- 70 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~-------------- 70 (290)
++++.+.+|+.++|+||||||||||+++|++++++. .-|.+.+++.+... ....++++|+...
T Consensus 52 ~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e~~~~~~~~~ 128 (604)
T 3k1j_A 52 VIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDE-NMPRIKTVPACQGRRIVEKYREKAKSQ 128 (604)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCT-TSCEEEEEETTHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccc-cCCcEEEEecchHHHHHHHHHHhhccc
Confidence 355677899999999999999999999999999874 24888888876542 3456888887420
Q ss_pred --------CCCCCCHHHHHHHHHHhcCchh-hhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHH
Q psy2520 71 --------FSPSLTVYEHLYFMALLKLDRR-VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA 141 (290)
Q Consensus 71 --------~~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia 141 (290)
.+..+++.+|+........... ... . ....-+.+|..+..... ...+|+|++|++..+
T Consensus 129 ~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~--~---~~~~~~L~G~~~~~~~~--------~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 129 ESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA--T---GAHAGALLGDVRHDPFQ--------SGGLGTPAHERVEPG 195 (604)
T ss_dssp TCC-----------CCCEEEECCTTCSSCCEEEC--T---TCCHHHHHCEECCCCC------------CCCCGGGGEECC
T ss_pred hhhhhhcccccccccccceeeccccCCCCCEEEc--C---CCCHHhcCceEEechhh--------cCCccccccccccCc
Confidence 1111111111110000000000 000 0 00011122221111111 245999999999999
Q ss_pred HHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q psy2520 142 TELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174 (290)
Q Consensus 142 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 174 (290)
+....++.+|++||... |++..+..+++.|.+
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 899999999888875
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.91 E-value=6.8e-10 Score=103.28 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=45.3
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE-EECCEecCc-cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI-RVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I-~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
=+.+|+++.|.||||||||||+..++....+. .|.| +++++.... .+.+++|+.+|+..+....++.+.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH
Confidence 37899999999999999999999999876542 3554 666554322 2234456555554333334554433
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.89 E-value=3.2e-10 Score=95.83 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2520 138 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175 (290)
Q Consensus 138 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 175 (290)
...|++|+.+|.++++| ||++|.....++++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999999999888764
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.85 E-value=6.5e-09 Score=97.00 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=85.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCC--------CCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH-
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPDDC--------IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA- 85 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~~~--------~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~- 85 (290)
.++|+|++|||||||++.|+|...+.. .++|.|.++|.++. +....|++.+.+. ..|.. .....
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp~----~lve~-f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIPP----QIVDA-FFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCCG----GGHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCCH----HHHHH-HHHHHH
Confidence 389999999999999999999765210 24689999987642 2223555544221 11211 11000
Q ss_pred Hhc---------Cchhhh--HHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHH----HHH-HhCCC
Q psy2520 86 LLK---------LDRRVK--AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA----TEL-LTDPA 149 (290)
Q Consensus 86 ~~~---------~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia----~aL-~~~p~ 149 (290)
... ...... .......+.++++.+++.+..--.+.+. +..+|+|+++|+.++ +++ ..+|+
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK----~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK----IDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC----GGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC----CCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 010 000111 2223344567788877654431111111 234788889988887 444 33344
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTS 177 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~ 177 (290)
+ +|+|++|..+...+++.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988643
No 168
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.83 E-value=9.4e-11 Score=99.78 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=40.1
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc---ccccEEEEccCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMYQHD 69 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~---~~~~ig~v~Q~~ 69 (290)
..++|++++|+||||||||||+++|++.+ |.+.++|.++... .+..+|+++|+.
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDE 81 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence 45689999999999999999999999864 7888988776431 122467777753
No 169
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.71 E-value=6.1e-09 Score=86.69 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=32.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.++++.+.+| +++|+||||||||||+++|.+++.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5789999999 9999999999999999999998766
No 170
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.70 E-value=4.2e-09 Score=89.08 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=27.7
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++.+|++++|+||||||||||+++|++++.|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999866
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.67 E-value=2.2e-08 Score=92.50 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=78.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
-+.+|+++.|.|++|+|||||+..++...... .+. +.|+.= .++..+...-..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~---------------Vl~fSl------Ems~~ql~~Rll--- 94 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRG---------------VAVFSL------EMSAEQLALRAL--- 94 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCE---------------EEEEES------SSCHHHHHHHHH---
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCe---------------EEEEeC------CCCHHHHHHHHH---
Confidence 47899999999999999999988777543211 122 334321 234433222110
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 168 (290)
.....+.+..... ..||.++++|+..|...+.+++++|.|+|... ..++
T Consensus 95 ---------------s~~~~v~~~~l~~-----------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i 143 (338)
T 4a1f_A 95 ---------------SDLTSINMHDLES-----------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQI 143 (338)
T ss_dssp ---------------HHHHCCCHHHHHH-----------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHH
T ss_pred ---------------HHhhCCCHHHHhc-----------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHH
Confidence 0011111111111 12999999999999999999999999998654 3466
Q ss_pred HHHHHHHHhcC-CcEEEEEeC
Q psy2520 169 IRMMRELTSQR-KKTVLCTIH 188 (290)
Q Consensus 169 ~~~l~~l~~~~-g~tii~~tH 188 (290)
...++++.++. |..+|++-|
T Consensus 144 ~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 144 RLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEec
Confidence 67777775555 788888865
No 172
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.65 E-value=1.8e-09 Score=95.50 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=47.8
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHH---cCCCCCCCCccEEE--------ECCEecCc-----cccccEEEEccCC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALS---QRLPDDCIIDGDIR--------VNGKPVEG-----KFRSACGFMYQHD 69 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~---G~~~~~~~~~G~I~--------i~G~~~~~-----~~~~~ig~v~Q~~ 69 (290)
..+|++++|+|||||||||++++|+ |+..+ .+|.|+ .+|.++.. .+++.+++++|.+
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 3679999999999999999999999 98777 479998 89988743 3567799999753
No 173
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.62 E-value=6.7e-09 Score=87.27 Aligned_cols=27 Identities=48% Similarity=0.684 Sum_probs=25.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999875
No 174
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.60 E-value=2.2e-08 Score=102.01 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHHHHHHHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEE-eCCCcHHHHhhcCeEE
Q psy2520 128 VVLSGGERKRLSFATELLTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDKII 202 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~-tH~~~~~~~~~~d~v~ 202 (290)
.-+|.|+.+|..++.+++.+++++|+|||.. +||......+++.+... .....+|+++ ||++ ..+.++++...
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~-~~l~~~~~~~~ 263 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDA-EKFQRYFNDAP 263 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCC-HHHHHHTTSCC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccH-HHHHHHhcCCC
Confidence 4489999999999999999999999999996 99988877777777665 3345677774 9986 46777877433
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.60 E-value=1.9e-09 Score=91.68 Aligned_cols=43 Identities=37% Similarity=0.558 Sum_probs=36.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE--EECCEecCc
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI--RVNGKPVEG 56 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I--~i~G~~~~~ 56 (290)
.++|++++|+||||||||||+++|++.+.. .|.+ +++|.++..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNVRH 66 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchhhh
Confidence 378999999999999999999999998763 4877 888876543
No 176
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.59 E-value=8.2e-11 Score=114.11 Aligned_cols=124 Identities=17% Similarity=0.211 Sum_probs=79.7
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc----ccccEEEEccCCC-CCCCCCHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQHDL-FSPSLTVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~----~~~~ig~v~Q~~~-~~~~lTv~e 79 (290)
++++.+.+| +.|+||||+|||||+++|++... .+-|.++|.++... ..+.+..+||... ..|.+.+.|
T Consensus 58 ~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ID 130 (499)
T 2dhr_A 58 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 130 (499)
T ss_dssp TTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEE
T ss_pred hccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEe
Confidence 456777788 89999999999999999999864 48899998776431 2234667777642 345555666
Q ss_pred HHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
++......+... .....+....+..++.. ||||++|+..|+++..++|++ |||+..
T Consensus 131 EId~l~~~r~~~~~~~~~e~~~~l~~LL~~---------------------Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 131 EIDAVGRKRGSGVGGGNDEREQTLNQLLVE---------------------MDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp CGGGTCCCSSSSTTTSSHHHHHHHHHHHHH---------------------GGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred hHHHHHHhhccCcCCCcHHHHHHHHHHHHH---------------------hcccccCccEEEEEecCChhh--cCcccc
Confidence 653322111100 00011222333444432 788888888888888888887 788765
No 177
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.59 E-value=6.5e-08 Score=93.24 Aligned_cols=59 Identities=24% Similarity=0.350 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEeCCC----------CCCCHHHHHHHHHHHHHHH---hcCCcEEEEEeCCC
Q psy2520 132 GGERKRLSFATELLTDPALLLCDEPT----------TGLDSFSASKLIRMMRELT---SQRKKTVLCTIHQP 190 (290)
Q Consensus 132 gGqrqRv~ia~aL~~~p~llllDEPt----------sgLD~~~~~~i~~~l~~l~---~~~g~tii~~tH~~ 190 (290)
+++++|..+++|....|.+|++||+. .|.|+.....+.++|..+. ...+..||.+||++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 56778888999999999999999993 4667666666666666552 23477899999986
No 178
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.58 E-value=1.1e-08 Score=85.68 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=30.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEE
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV 49 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i 49 (290)
.+|++++|+||||||||||+++|++.+++. ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 379999999999999999999999987642 2455544
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.56 E-value=9.6e-09 Score=94.22 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=58.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cc-----cccEEEE-ccCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KF-----RSACGFM-YQHD 69 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~-----~~~ig~v-~Q~~ 69 (290)
.+++|.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.++.. .+ +..++++ +|..
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 4788889999999999999999999999999998773 6899998877642 12 5678999 6764
Q ss_pred CCCCCCCHHHHHH
Q psy2520 70 LFSPSLTVYEHLY 82 (290)
Q Consensus 70 ~~~~~lTv~e~l~ 82 (290)
...|..++++++.
T Consensus 173 ~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 173 NADPASVVFDAIK 185 (320)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4444334444443
No 180
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.55 E-value=3.6e-08 Score=91.36 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=48.2
Q ss_pred CCCChHHHHHHHHHHHHHhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe--CCCc
Q psy2520 128 VVLSGGERKRLSFATELLTDPALLLCD-EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI--HQPS 191 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~~p~llllD-EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~t--H~~~ 191 (290)
..+|+|++|++. +.+...++-++++| +|+.++|......++..+... .. +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~-~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE-FK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHH-TT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHh-cC-CCCEEEEEECcccC
Confidence 348999998876 55555777889999 999999999988888888776 22 67888888 7753
No 181
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.53 E-value=1.1e-08 Score=86.84 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHH--HhhcCeEEEEeC
Q psy2520 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL--IDMFDKIILLAD 206 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~--~~~~d~v~~l~~ 206 (290)
.+.|+.+|..++..+..+|..+.++ .+.++|..+..+.+.+... .+.++|+.+|.+. +. ...||.+++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~-e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLI-ENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTT-TTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhh-hcCcHhhCCEEEEEEC
Confidence 4678889999998888887654333 3455666666665555432 2457888888763 33 567898888853
No 182
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.38 E-value=8.3e-08 Score=83.34 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=34.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~ 54 (290)
..++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4578999999999999999999999997 28899988775
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.37 E-value=5.3e-08 Score=97.58 Aligned_cols=131 Identities=14% Similarity=0.037 Sum_probs=75.6
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
|+.+++|..++|+|++|||||||++.|++...+. ...|+| .+|..+.. ..++.+++.+|...++.. ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~--- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV--- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE---
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE---
Confidence 4567899999999999999999999999765431 136877 56665533 123456666554332211 1000
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+..|+. |. ..++ .......-..++.++++| |+.|+++
T Consensus 77 ------------------------------nliDTp-G~------~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~ 113 (665)
T 2dy1_A 77 ------------------------------FLLDAP-GY------GDFV-----GEIRGALEAADAALVAVS-AEAGVQV 113 (665)
T ss_dssp ------------------------------EEEECC-CS------GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCH
T ss_pred ------------------------------EEEeCC-Cc------cchH-----HHHHHHHhhcCcEEEEEc-CCcccch
Confidence 011111 00 0011 111222235678899999 9999998
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
.+.. +++.++ +.+.++|++.|.++
T Consensus 114 qt~~-~~~~~~----~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 114 GTER-AWTVAE----RLGLPRMVVVTKLD 137 (665)
T ss_dssp HHHH-HHHHHH----HTTCCEEEEEECGG
T ss_pred hHHH-HHHHHH----HccCCEEEEecCCc
Confidence 8763 333332 34778888888864
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=1.7e-07 Score=79.37 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=24.7
Q ss_pred CccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 2 TELELTGAALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 2 ~~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
...||||.+.+|++++|+||+||||||+.+.|++.+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 357999999999999999999999999999999764
No 185
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.35 E-value=9.2e-07 Score=81.43 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=34.7
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCcEEEEEeCCC
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTS--QRKKTVLCTIHQP 190 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~--~~g~tii~~tH~~ 190 (290)
.+|.+|++||+... |+.....+...+..+.. ..+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888876632 1478999999986
No 186
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.33 E-value=2.6e-07 Score=78.96 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=27.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999999876
No 187
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.32 E-value=2.4e-06 Score=78.74 Aligned_cols=138 Identities=13% Similarity=0.137 Sum_probs=77.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcC--CCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~--~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
-+++|+++.|.||+|||||||+..++.. .++. .| |. ...+.|+.-+..+ ....-..+...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~---~g-----g~------~~~vlyi~~E~~~----~~~~l~~~~~~ 179 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA---GG-----YP------GGKIIFIDTENTF----RPDRLRDIADR 179 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT---TT-----BC------CCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc---cC-----CC------CCeEEEEECCCCC----CHHHHHHHHHH
Confidence 4789999999999999999999988864 2221 01 00 1224454433321 12221112111
Q ss_pred hcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHH-HHHHHHHHHHH----hCCCeEEEeCCCCCCC
Q psy2520 87 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE-RKRLSFATELL----TDPALLLCDEPTTGLD 161 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGq-rqRv~ia~aL~----~~p~llllDEPtsgLD 161 (290)
+.. . ..++++.+.+. +. .++.+ .+.+..++.++ .+++++++|+.++-..
T Consensus 180 ~g~----~-------~~~~l~~l~~~----~~-----------~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 180 FNV----D-------HDAVLDNVLYA----RA-----------YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp TTC----C-------HHHHHHTEEEE----EC-----------CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred cCC----C-------HHHHHhceeEe----ec-----------CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 111 0 01223322110 11 23332 34555566666 5799999999998664
Q ss_pred HH------------HHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 162 SF------------SASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 162 ~~------------~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
.. ...+++..|+.++++.|.+||++.|-.
T Consensus 234 ~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 234 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 32 135666777777677789999998864
No 188
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.31 E-value=1.7e-07 Score=84.92 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHHH--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhcCCc--EEEEEeCCCcHHHHhhcCeEE
Q psy2520 130 LSGGERKRLSFATELL--TDPALLLCDEPTTGLDSFS-ASKLIRMMRELTSQRKK--TVLCTIHQPSSELIDMFDKII 202 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~--~~p~llllDEPtsgLD~~~-~~~i~~~l~~l~~~~g~--tii~~tH~~~~~~~~~~d~v~ 202 (290)
+|.|++ .+++.+. ..|.++++ +.+|... +..+.+.+.+++...|. .+.+++|+- ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 888886 4566666 78999998 7899877 67788888888544443 566667764 34566666544
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.29 E-value=3.8e-06 Score=77.67 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEeC
Q psy2520 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK-KTVLCTIH 188 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g-~tii~~tH 188 (290)
.++.++++..+++..+.+|+++|+.-..+..|... ...+.+++.+ ...| .+|++++.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~-~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREV-DPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHS-CTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHh-cccCCCEEEEEeC
Confidence 56788999999999999999888874444455443 4556677776 3334 57777765
No 190
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.27 E-value=5.5e-07 Score=85.85 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=46.6
Q ss_pred hCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE-EeCCeEEEEcCH
Q psy2520 146 TDPALLLCDEPTTGLDS-FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL-LADSRTAFIGSK 215 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~-~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~-l~~G~i~~~g~~ 215 (290)
.+|++|++||+..-.+. ..+..++..+..+ .+.|..||++||++..++..+.+++.- +..|.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l-~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNEL-HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHH-HTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHH-HHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 48999999999876654 6788899999988 566889999999853322112222222 345666555544
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.27 E-value=9.8e-06 Score=72.27 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH----------HHHHHHHHHHHHHHhc---CCcEEEEEeCCC---cHHH
Q psy2520 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDS----------FSASKLIRMMRELTSQ---RKKTVLCTIHQP---SSEL 194 (290)
Q Consensus 131 SgGqrqRv~ia~aL~~~p~llllDEPtsgLD~----------~~~~~i~~~l~~l~~~---~g~tii~~tH~~---~~~~ 194 (290)
+++++.|..++.+...+|.+|++||+.+-++. .....++..+...... .+..||.+|+++ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 45667777778888889999999999776543 2233444444443111 245677788864 2234
Q ss_pred HhhcCeEEEEe
Q psy2520 195 IDMFDKIILLA 205 (290)
Q Consensus 195 ~~~~d~v~~l~ 205 (290)
.+-|++.+.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 45566655443
No 192
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.24 E-value=6.1e-06 Score=75.08 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEeCC
Q psy2520 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT--VLCTIHQ 189 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t--ii~~tH~ 189 (290)
||.++++|+..|...+.++++++.|+|... ..++...++++.++.|.. +|++-|-
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 899999999999999999999999998643 445666677775555777 8888763
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.24 E-value=1.4e-07 Score=80.16 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=34.6
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP 53 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~ 53 (290)
..+|++++|+|+||||||||+++|++.+++. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4689999999999999999999999988763 5788776544
No 194
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.23 E-value=3.8e-07 Score=77.91 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=26.7
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
....+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4456899999999999999999999998865
No 195
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.21 E-value=3.2e-07 Score=75.59 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=31.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~ 54 (290)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 469999999999999999999999863 6777876544
No 196
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.20 E-value=3.8e-06 Score=76.68 Aligned_cols=139 Identities=16% Similarity=0.177 Sum_probs=77.3
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCC-CCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 87 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~-~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~ 87 (290)
-+++|+++.|.||+|||||||+..++... .+. ..| |. ...+.|+.-+..+ ....-......+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~------~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL------SGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC------SCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC------CCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 47899999999999999999998887532 221 011 10 1224454433221 122211111111
Q ss_pred cCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChH-HHHHHHHHHHHH---hCCCeEEEeCCCCCCCH-
Q psy2520 88 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG-ERKRLSFATELL---TDPALLLCDEPTTGLDS- 162 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgG-qrqRv~ia~aL~---~~p~llllDEPtsgLD~- 162 (290)
.. .. .++++.+-+ .+ ..+.. +.+.+..++.++ .+|+++++|+.++-...
T Consensus 166 g~----~~-------~~~~~~l~~----~~-----------~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~ 219 (324)
T 2z43_A 166 GL----DI-------DNVMNNIYY----IR-----------AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAE 219 (324)
T ss_dssp TC----CH-------HHHHHTEEE----EE-----------CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHH
T ss_pred CC----CH-------HHHhccEEE----Ee-----------CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhh
Confidence 11 00 112221110 01 13333 335677777777 67999999999875532
Q ss_pred -------H----HHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 163 -------F----SASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 163 -------~----~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
. ...+++..|+.++++.|.+||++.|-.
T Consensus 220 ~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 220 YPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp SCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 1 135566677777666789999988753
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.17 E-value=8.4e-07 Score=75.26 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=27.7
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
-.+.+|.+++|+|++|||||||++.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3577899999999999999999999999753
No 198
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.15 E-value=4.5e-07 Score=88.90 Aligned_cols=43 Identities=42% Similarity=0.519 Sum_probs=36.4
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc-EEE-ECCEec
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG-DIR-VNGKPV 54 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G-~I~-i~G~~~ 54 (290)
.+++|++++|+|+||||||||+++|+|++.|. +| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcHH
Confidence 46789999999999999999999999999874 45 674 887654
No 199
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.13 E-value=1.8e-07 Score=77.68 Aligned_cols=40 Identities=35% Similarity=0.505 Sum_probs=31.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc--EEEECCEec
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG--DIRVNGKPV 54 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G--~I~i~G~~~ 54 (290)
.+|++++|+|++||||||++++|++.+++ .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999997754 25 566665443
No 200
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.13 E-value=9.1e-08 Score=82.12 Aligned_cols=55 Identities=27% Similarity=0.306 Sum_probs=42.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC---CCCCCCccEEEE--------CCEecCc-----cccccEEEEccCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL---PDDCIIDGDIRV--------NGKPVEG-----KFRSACGFMYQHD 69 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~---~~~~~~~G~I~i--------~G~~~~~-----~~~~~ig~v~Q~~ 69 (290)
.+.+++|+|||||||||+.++|++.+ .+ .+|+++. +|.++.. .+++.+++++|++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~---d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLL---DSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEE---EHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcc---cCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 35689999999999999999999865 33 3688877 6776642 2556788888853
No 201
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.12 E-value=9.4e-07 Score=72.45 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999754
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.09 E-value=7.2e-06 Score=78.00 Aligned_cols=124 Identities=14% Similarity=0.165 Sum_probs=69.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCch
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR 91 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~ 91 (290)
++.+++++|||||||||++..|++.+.+. .++|.+-+.++. -+ ...+.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~~D~~----------------r~--~a~eqL~~-------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVAADVY----------------RP--AAYDQLLQ-------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCS----------------CH--HHHHHHHH--------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEecCcc----------------ch--hHHHHHHH--------
Confidence 57899999999999999999999887663 355655333210 00 12222222
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC-CC--CCHHHHHHH
Q psy2520 92 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT-TG--LDSFSASKL 168 (290)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt-sg--LD~~~~~~i 168 (290)
+-+..++.-..... ..+--.--+-+++.+...+++++|+|+|- .+ .|+....++
T Consensus 147 -------------~~~~~gv~~~~~~~----------~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el 203 (433)
T 3kl4_A 147 -------------LGNQIGVQVYGEPN----------NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEM 203 (433)
T ss_dssp -------------HHHTTTCCEECCTT----------CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHH
T ss_pred -------------HHHhcCCceeeccc----------cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHH
Confidence 12222332111000 01111112234455555689999999997 34 788877777
Q ss_pred HHHHHHHHhcCCcEEEEEeC
Q psy2520 169 IRMMRELTSQRKKTVLCTIH 188 (290)
Q Consensus 169 ~~~l~~l~~~~g~tii~~tH 188 (290)
.++++.+ ......+++.++
T Consensus 204 ~~i~~~~-~pd~vlLVlDa~ 222 (433)
T 3kl4_A 204 KEMYDVL-KPDDVILVIDAS 222 (433)
T ss_dssp HHHHHHH-CCSEEEEEEEGG
T ss_pred HHHHHhh-CCcceEEEEeCc
Confidence 7776665 333344444444
No 203
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.06 E-value=2.5e-06 Score=69.34 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=24.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
+.++.+.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 356677666 99999999999999999887
No 204
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.06 E-value=3e-06 Score=86.68 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=29.3
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++.+.+|+.++|+||||||||||+++|++.+..
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 346789999999999999999999999998654
No 205
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.99 E-value=1.1e-06 Score=82.32 Aligned_cols=134 Identities=13% Similarity=0.042 Sum_probs=76.1
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCC-CCCCCCHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL-FSPSLTVYEHLYF 83 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~-~~~~lTv~e~l~~ 83 (290)
++|+.+++|++++|+||||||||||+++|+|.. .|.+..-..+ ...+...+|++||... ++.+.+....+.
T Consensus 161 ~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~-~~~~~~~lg~~~q~~~~l~dd~~~~~~~~- 232 (377)
T 1svm_A 161 CMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLP-LDRLNFELGVAIDQFLVVFEDVKGTGGES- 232 (377)
T ss_dssp HHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSC-TTTHHHHHGGGTTCSCEEETTCCCSTTTT-
T ss_pred hcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEEEecc-chhHHHHHHHhcchhHHHHHHHHHHHHHH-
Confidence 467889999999999999999999999999853 4777651111 1122234667777643 233333221100
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHH---cCCC-------------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIE---LGLM-------------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~---~~l~-------------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
..+...... .....+...++. +.+. ...+.. ...+++|+++|+..+.+++..
T Consensus 233 -r~l~~~~~~---~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~--------~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 233 -RDLPSGQGI---NNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMN--------EYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp -TTCCCCSHH---HHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEEC--------SCCCCHHHHTTEEEEEECCCC
T ss_pred -hhccccCcc---hHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChh--------HHhhcHHHHHHHhhhhccCCC
Confidence 000000000 001112233320 0011 011112 345889999999988888888
Q ss_pred CCeEE-EeCCCC
Q psy2520 148 PALLL-CDEPTT 158 (290)
Q Consensus 148 p~lll-lDEPts 158 (290)
|++++ ||+|+.
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 88887 899887
No 206
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.97 E-value=6.4e-07 Score=79.23 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=30.3
Q ss_pred ceEEEEeC---CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 5 ELTGAALS---GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 5 ~is~~~~~---Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++||.+.+ |++++|+|++||||||+.++|++.+
T Consensus 37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 67888889 9999999999999999999999854
No 207
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.94 E-value=3.1e-06 Score=77.51 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=25.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.++..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35778999999999999999999987643
No 208
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.93 E-value=3.7e-06 Score=77.01 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=23.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++||+||||||||||+++|++++.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999998763
No 209
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.92 E-value=3.2e-05 Score=69.64 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=26.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35788899999999999999999999865
No 210
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.91 E-value=9.3e-06 Score=77.16 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=40.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC-------C--CCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD-------D--CIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~-------~--~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.++|+|+||||||||++.|+|.... . ...+|.+.++|+++.- ..++..++.+|....+..+++.+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 7899999999999999999997531 0 0146899999986531 2344445555544445544555555
Q ss_pred HH
Q psy2520 82 YF 83 (290)
Q Consensus 82 ~~ 83 (290)
..
T Consensus 262 ~~ 263 (439)
T 1mky_A 262 EK 263 (439)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 211
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.85 E-value=3.2e-06 Score=78.20 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=33.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~ 54 (290)
++.+++|+|++|||||||++.|+|.+.+. .|+|.+.+.+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecC
Confidence 47899999999999999999999987663 57777766544
No 212
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.84 E-value=9.6e-06 Score=69.11 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=24.6
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
+.++.+.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 356677665 99999999999999999876
No 213
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.82 E-value=0.00013 Score=63.10 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=29.0
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEeC
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ-RKKTVLCTIH 188 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~g~tii~~tH 188 (290)
.+|+++|+..+.+.++......+..++..+... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 378999999998888886665555555433211 1257888888
No 214
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.81 E-value=4.1e-06 Score=72.64 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEE-eCCCcHHHHhhcCe
Q psy2520 131 SGGERKRLSFATELLTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDK 200 (290)
Q Consensus 131 SgGqrqRv~ia~aL~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~-tH~~~~~~~~~~d~ 200 (290)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.... ..-.+++++ |... ..+.++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~-~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDT-SMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCC-HHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCH-HHHHHHcCC
Confidence 445555543 33578999999999976 688777655555555442 223455555 4553 445566653
No 215
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.81 E-value=0.00035 Score=64.71 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=45.2
Q ss_pred HHHHHHHHHH--hCCCeEEEeCCCCCCCHH-------------HH---HHHHHHHHHHHhcCCcEEEEEeCCCcH-----
Q psy2520 136 KRLSFATELL--TDPALLLCDEPTTGLDSF-------------SA---SKLIRMMRELTSQRKKTVLCTIHQPSS----- 192 (290)
Q Consensus 136 qRv~ia~aL~--~~p~llllDEPtsgLD~~-------------~~---~~i~~~l~~l~~~~g~tii~~tH~~~~----- 192 (290)
+-..+++.++ .+|+++++|.+++-.... .. .+++..|..++++.+.+||++.|-...
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3455666664 689999999999866321 11 233444444446678999998885321
Q ss_pred ----------HHHhhcCeEEEEeCCeE
Q psy2520 193 ----------ELIDMFDKIILLADSRT 209 (290)
Q Consensus 193 ----------~~~~~~d~v~~l~~G~i 209 (290)
.+..++|-++.+...+.
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~ 234 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGA 234 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEE
T ss_pred CCCcccCCCcceeeeccEEEEEEEeee
Confidence 24557887777765543
No 216
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.75 E-value=2.2e-06 Score=78.86 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=36.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP 53 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~ 53 (290)
++++.+.+|.+++|+|++|||||||++.|++.+.+. .|+|.+-+.+
T Consensus 48 ~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~d 93 (341)
T 2p67_A 48 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAVD 93 (341)
T ss_dssp HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred hCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEeec
Confidence 455667889999999999999999999999987653 4666664444
No 217
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.74 E-value=3.1e-05 Score=63.46 Aligned_cols=27 Identities=48% Similarity=0.583 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 218
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.72 E-value=0.00019 Score=68.14 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=74.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
=+.+|+++.|.|++|+|||||+..++...... .| ..+.|+.=+ ++..+...
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g--------------~~vl~~slE------~~~~~l~~------ 246 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG--------------VGVGIYSLE------MPAAQLTL------ 246 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC--------------CCEEEEESS------SCHHHHHH------
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC--------------CeEEEEECC------CCHHHHHH------
Confidence 37899999999999999999988777543210 11 124443321 23322111
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCC--CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHH
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLM--NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 166 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 166 (290)
++. ....++. .... ..||..+.+|+.-|...+.+.++++.|+|.. +. .
T Consensus 247 ------------R~~--~~~~~i~~~~l~~-----------g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~---~ 296 (444)
T 2q6t_A 247 ------------RMM--CSEARIDMNRVRL-----------GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL---M 296 (444)
T ss_dssp ------------HHH--HHHTTCCTTTCCG-----------GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH---H
T ss_pred ------------HHH--HHHcCCCHHHHhC-----------CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH---H
Confidence 000 0112322 2211 2399999999999988888889999888743 33 4
Q ss_pred HHHHHHHHHHhcCCcEEEEEeC
Q psy2520 167 KLIRMMRELTSQRKKTVLCTIH 188 (290)
Q Consensus 167 ~i~~~l~~l~~~~g~tii~~tH 188 (290)
++...++++.++.+..+|++-+
T Consensus 297 ~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 297 EVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEcC
Confidence 4556666665555778888855
No 219
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.71 E-value=1.1e-05 Score=78.95 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=32.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP 53 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~ 53 (290)
+|+.++|+||||+|||||+++|++.+.+. .|.|.+.|..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~~~ 145 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGVR 145 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecccc
Confidence 79999999999999999999999988663 5888777643
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.67 E-value=8e-06 Score=69.55 Aligned_cols=42 Identities=31% Similarity=0.443 Sum_probs=34.6
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc--EEEECCEe
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG--DIRVNGKP 53 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G--~I~i~G~~ 53 (290)
.+.+|.+++|+|++||||||+.+.|++.+.|. .| .+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 35789999999999999999999999987652 57 77777543
No 221
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.65 E-value=1.6e-05 Score=69.01 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=27.3
Q ss_pred ceEEEEe---CCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 5 ELTGAAL---SGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 5 ~is~~~~---~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++|+++. +|.+++|.||+||||||+++.|+..+.+
T Consensus 15 ~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 15 TENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -----CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4556665 8999999999999999999999987764
No 222
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.65 E-value=1.8e-05 Score=67.02 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=25.9
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999999998663
No 223
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.64 E-value=0.00036 Score=63.12 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=45.5
Q ss_pred HHHHHHHHHH---hCCCeEEEeCCCCCCC--------HH----HHHHHHHHHHHHHhcCCcEEEEEeCCCcH--------
Q psy2520 136 KRLSFATELL---TDPALLLCDEPTTGLD--------SF----SASKLIRMMRELTSQRKKTVLCTIHQPSS-------- 192 (290)
Q Consensus 136 qRv~ia~aL~---~~p~llllDEPtsgLD--------~~----~~~~i~~~l~~l~~~~g~tii~~tH~~~~-------- 192 (290)
+-+..++.++ .+++++++|.-++-.. .. ...+++..|+.++++.|.+||++.|-...
T Consensus 190 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~ 269 (322)
T 2i1q_A 190 LFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMA 269 (322)
T ss_dssp HHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------C
T ss_pred HHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCC
Confidence 3444455555 4589999999876321 11 13556677777777789999998773211
Q ss_pred -------HHHhhcCeEEEEeC
Q psy2520 193 -------ELIDMFDKIILLAD 206 (290)
Q Consensus 193 -------~~~~~~d~v~~l~~ 206 (290)
.+...+|.++.|..
T Consensus 270 ~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 270 EQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp CEESSHHHHHHHCSEEEEEEE
T ss_pred cCCCCcHHHHhcCcEEEEEEe
Confidence 24556788888764
No 224
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.64 E-value=0.00011 Score=66.38 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=32.4
Q ss_pred hCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 146 TDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 146 ~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
.+|.+|++||+-. .-+...+..+...+..+ .+.|..+|++++.+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~-~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTL-YLLEKQIILASDRH 141 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHH-HHCCCeEEEEecCC
Confidence 5699999999865 33457788899998887 34566777777643
No 225
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.59 E-value=2.6e-05 Score=65.56 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 226
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.59 E-value=0.00015 Score=63.96 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++.-+.|.||+|+|||||++.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 466779999999999999999999764
No 227
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.57 E-value=2.6e-05 Score=65.10 Aligned_cols=39 Identities=36% Similarity=0.373 Sum_probs=29.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK 52 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~ 52 (290)
.+++|+|++|||||||++.|.+.+++....-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 579999999999999999999876442222466766553
No 228
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.57 E-value=3.2e-05 Score=64.36 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=26.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47888889999999999999999999999975
No 229
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.53 E-value=1.9e-05 Score=74.90 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=39.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE 55 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~ 55 (290)
.++++. +|++++++|+|||||||++..|++.+.+. .|+|.+.+.++.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecccc
Confidence 356776 89999999999999999999999998873 578888776653
No 230
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.52 E-value=3.5e-05 Score=63.94 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=28.2
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.....+|.+++|+|++||||||+.+.|+..+.+
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345568999999999999999999999987764
No 231
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.47 E-value=5.4e-05 Score=70.28 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=24.9
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
+..+.+.+| +++|+|||||||||+|.+|.
T Consensus 18 ~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 18 NSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 356777776 99999999999999999876
No 232
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.42 E-value=5.3e-05 Score=66.42 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=32.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~ 54 (290)
...++.++.|+|++||||||+.+.|+..+.. +.+.+++-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHHH
Confidence 3567889999999999999999999987642 5677777443
No 233
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.41 E-value=0.00011 Score=60.35 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 234
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.41 E-value=7.8e-05 Score=60.34 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998653
No 235
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.36 E-value=7.5e-05 Score=62.74 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999754
No 236
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.36 E-value=1.7e-05 Score=71.79 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=36.3
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~ 54 (290)
+++..+ |++++++|+||+||||++..|++.+.+. .|+|.+.+.+.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D~ 136 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGADV 136 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecCC
Confidence 666665 9999999999999999999999988763 46777655443
No 237
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.36 E-value=9.6e-05 Score=60.95 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999853
No 238
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.35 E-value=7.3e-05 Score=70.23 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=33.8
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcC-----------CCCCCCCccEEEECCE
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQR-----------LPDDCIIDGDIRVNGK 52 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~-----------~~~~~~~~G~I~i~G~ 52 (290)
+-..+..|..++|+|+||+|||||++.|+|. ..| ..|.|.+.+.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p---~~g~v~v~~~ 69 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDP---NESRVPVPDE 69 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CC---SEEEEECCCH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCc---eeEEEEECCc
Confidence 4456678889999999999999999999997 333 3688877664
No 239
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.33 E-value=0.00017 Score=62.58 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=40.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC---------CCcHHHHhhcCeEEEEe
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH---------QPSSELIDMFDKIILLA 205 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH---------~~~~~~~~~~d~v~~l~ 205 (290)
+|+++++||--. |+.. +++.+..++. .|.+||++-| .....+..+||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999954 5543 5555666644 4899999999 45567888999999874
No 240
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.28 E-value=0.0017 Score=59.68 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+..-+.|.||+|+|||||+++|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999754
No 241
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.27 E-value=0.001 Score=57.61 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+..-+.|.||+|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999999753
No 242
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.26 E-value=0.0045 Score=59.46 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=47.6
Q ss_pred HHHHHHHHHHH--hCCCeEEEeCCCCCC-------CH-HHHHHHHHHHHHHHhcCCcEEEEEeCCCc-------------
Q psy2520 135 RKRLSFATELL--TDPALLLCDEPTTGL-------DS-FSASKLIRMMRELTSQRKKTVLCTIHQPS------------- 191 (290)
Q Consensus 135 rqRv~ia~aL~--~~p~llllDEPtsgL-------D~-~~~~~i~~~l~~l~~~~g~tii~~tH~~~------------- 191 (290)
.+.++.++.++ .+|+++++|=-+. + +. ....+++..|+.++++.|.+||+++|-..
T Consensus 340 ~~i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p 418 (503)
T 1q57_A 340 DRLLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPV 418 (503)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCC
Confidence 34455555554 4799999995432 2 21 23356788888887778999999988531
Q ss_pred --------HHHHhhcCeEEEEe
Q psy2520 192 --------SELIDMFDKIILLA 205 (290)
Q Consensus 192 --------~~~~~~~d~v~~l~ 205 (290)
..+...+|-|++|.
T Consensus 419 ~l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 419 SITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp CSSSCSSSSHHHHHCSEEEEEE
T ss_pred ChhhhccchHhhecCcEEEEEE
Confidence 12556799999986
No 243
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.25 E-value=0.00015 Score=58.77 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 244
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.25 E-value=0.00015 Score=62.74 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.4
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-.-.+|.+++|+|++||||||+.+.|++.
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999974
No 245
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.25 E-value=0.00026 Score=58.77 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=20.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+..++. .++|+|++|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 16 SLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 567777777 6799999999999999999973
No 246
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.24 E-value=0.00018 Score=58.89 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=23.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998654
No 247
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.23 E-value=0.00013 Score=60.02 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.++|+|++|+|||||++.++|...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998643
No 248
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.22 E-value=0.00063 Score=74.13 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=25.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.+|+++.|.||+|+|||||+..++...
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 8899999999999999999998887644
No 249
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.17 E-value=0.00014 Score=63.43 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
-+.|.||+|+|||||+++|++...
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 388999999999999999998754
No 250
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.17 E-value=4.8e-05 Score=70.53 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=20.5
Q ss_pred EEEECCCCChHHHHHHHHHcCCCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++|+|++|+|||||++.|.|....
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC-
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCC
Confidence 499999999999999999886543
No 251
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.14 E-value=0.00024 Score=58.51 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998744
No 252
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.12 E-value=0.00023 Score=62.06 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-+++|.||+||||||+.+.|+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999964
No 253
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.12 E-value=0.00025 Score=63.54 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=28.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG 51 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G 51 (290)
..|.++.|.||||||||||.+.|+..++. |.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEec
Confidence 35789999999999999999999875432 5566665
No 254
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.12 E-value=0.00011 Score=68.90 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=30.2
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
|+++.+.+|+.++|+||+|||||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 577889999999999999999999999998764
No 255
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.11 E-value=0.00012 Score=61.20 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=30.3
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCC----CCC-CCCccEEEECCE
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRL----PDD-CIIDGDIRVNGK 52 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~----~~~-~~~~G~I~i~G~ 52 (290)
+|+..++++ ++|+|++|+|||||++.+.+-. .|+ ....+.+.++|.
T Consensus 19 ~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 19 LGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp HTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred hhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 345556664 7899999999999999998632 121 113456666653
No 256
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.10 E-value=0.00025 Score=62.26 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999753
No 257
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.08 E-value=0.00025 Score=58.58 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.07 E-value=0.00028 Score=56.79 Aligned_cols=19 Identities=37% Similarity=0.635 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHH
Q psy2520 15 LVAIMGASGAGKSTLLAAL 33 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l 33 (290)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 259
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.07 E-value=0.00031 Score=59.65 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHc
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.05 E-value=0.0011 Score=61.57 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
=+.+|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999999876653
No 261
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.00 E-value=0.00033 Score=58.93 Aligned_cols=24 Identities=50% Similarity=0.702 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999876543
No 262
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.00 E-value=8.9e-05 Score=68.61 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=27.3
Q ss_pred eEEEEeCCeE--EEEECCCCChHHHHHHHHHcCC
Q psy2520 6 LTGAALSGTL--VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 6 is~~~~~Ge~--~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 15 l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 15 LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3455678888 9999999999999999999865
No 263
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.00 E-value=0.00036 Score=57.98 Aligned_cols=23 Identities=52% Similarity=0.797 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999754
No 264
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.99 E-value=0.00044 Score=57.70 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 265
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.99 E-value=0.0004 Score=57.13 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 266
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.95 E-value=0.00024 Score=64.67 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=27.2
Q ss_pred EEEeCCeE--EEEECCCCChHHHHHHHHHcCCCC
Q psy2520 8 GAALSGTL--VAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 8 ~~~~~Ge~--~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
..++.|++ +.+.||+|+|||||++++++.+.+
T Consensus 39 ~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 39 KFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34567877 999999999999999999987654
No 267
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.95 E-value=0.00038 Score=57.15 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++.++.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999853
No 268
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.94 E-value=0.0005 Score=57.48 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999976543
No 269
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.94 E-value=0.00046 Score=56.17 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHHc
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G 35 (290)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 270
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.93 E-value=0.00043 Score=56.68 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999753
No 271
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.90 E-value=0.00037 Score=61.46 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
|||+.+.....++++.+.+...+...+..+..|.. .++.+.++++.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~-~~~e~~~~~l~~ 190 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD-EDIEREIKHISE 190 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-HHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-HHHHHHHHHHHH
Confidence 99999999999999999887555455555666664 466666665443
No 272
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.89 E-value=0.00021 Score=60.12 Aligned_cols=25 Identities=48% Similarity=0.675 Sum_probs=22.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 273
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.89 E-value=0.00051 Score=57.12 Aligned_cols=24 Identities=38% Similarity=0.536 Sum_probs=21.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999975
No 274
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.85 E-value=0.00056 Score=57.38 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
No 275
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.84 E-value=0.00059 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++.+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
No 276
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.83 E-value=0.00069 Score=55.74 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+.+++|+|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998853
No 277
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.82 E-value=0.0013 Score=54.22 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999766653
No 278
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.80 E-value=0.0031 Score=69.75 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=47.2
Q ss_pred HHHHHHHHHH--hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HhcCCcEEEEEeCCCcH-----
Q psy2520 136 KRLSFATELL--TDPALLLCDEPTTGLD-S------------FSASKLIRMMREL---TSQRKKTVLCTIHQPSS----- 192 (290)
Q Consensus 136 qRv~ia~aL~--~~p~llllDEPtsgLD-~------------~~~~~i~~~l~~l---~~~~g~tii~~tH~~~~----- 192 (290)
+-+.+++.++ .+|+++++|.-++-.. + ...+.+...|+.+ +++.|.+||++.|-...
T Consensus 448 ~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~ 527 (2050)
T 3cmu_A 448 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 527 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCS
T ss_pred HHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccccccccc
Confidence 3455666654 5799999999876552 1 1223344555554 56789999999874221
Q ss_pred ----------HHHhhcCeEEEEeCCe
Q psy2520 193 ----------ELIDMFDKIILLADSR 208 (290)
Q Consensus 193 ----------~~~~~~d~v~~l~~G~ 208 (290)
.+..++|-++.|....
T Consensus 528 g~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 528 GNPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp SCCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred CCCcCCCCcchhhhhCCEEEEEEecc
Confidence 2566789888876544
No 279
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.79 E-value=0.00065 Score=57.03 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=24.1
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998644
No 280
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.78 E-value=0.0044 Score=58.88 Aligned_cols=54 Identities=9% Similarity=0.144 Sum_probs=39.2
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEeC
Q psy2520 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT--VLCTIH 188 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t--ii~~tH 188 (290)
|+..+.+|+.-|...+.+.+++|.|+|. +++ .++...++++.++.|.. +|++-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~---~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSV---NYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBH---HHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7888889998888888888899998874 444 44555556654445677 888855
No 281
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.78 E-value=0.00063 Score=55.89 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987543
No 282
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.76 E-value=0.015 Score=63.54 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=44.9
Q ss_pred HHHHHHHH--hCCCeEEEeCCCCCCCHH-------------HHHHHHHHHHH---HHhcCCcEEEEEeCCCc--------
Q psy2520 138 LSFATELL--TDPALLLCDEPTTGLDSF-------------SASKLIRMMRE---LTSQRKKTVLCTIHQPS-------- 191 (290)
Q Consensus 138 v~ia~aL~--~~p~llllDEPtsgLD~~-------------~~~~i~~~l~~---l~~~~g~tii~~tH~~~-------- 191 (290)
+.+++.++ .+|+++++|..++-.... ..+.+.+.+++ ++++.|.+||++.|-..
T Consensus 450 l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~ 529 (1706)
T 3cmw_A 450 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 529 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSC
T ss_pred HHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCC
Confidence 34555554 579999999998766411 12233344444 34667999999988521
Q ss_pred -------HHHHhhcCeEEEEeCCe
Q psy2520 192 -------SELIDMFDKIILLADSR 208 (290)
Q Consensus 192 -------~~~~~~~d~v~~l~~G~ 208 (290)
..+..++|-++.+...+
T Consensus 530 ~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 530 PETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp CEEESSCSHHHHHEEEEEEEEEEE
T ss_pred CccCCCCcceeeeCCEEEEEEecc
Confidence 13567889888876543
No 283
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.00067 Score=55.76 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.+++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 284
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.76 E-value=0.00075 Score=55.93 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999876543
No 285
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.75 E-value=0.00072 Score=56.45 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999753
No 286
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.73 E-value=0.0012 Score=58.59 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 287
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.71 E-value=0.0005 Score=63.92 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=37.8
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH
Q psy2520 147 DPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192 (290)
Q Consensus 147 ~p~llllDEPtsgLD---~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~ 192 (290)
.|.++++||--.-++ +.....+.++++.. ++.|..++++||.+.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~-Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRI-RKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHG-GGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHh-hhhCeEEEEEcCCHHH
Confidence 589999999988774 67778888888887 6679999999999853
No 288
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.71 E-value=0.00085 Score=55.49 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 289
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.69 E-value=0.00081 Score=53.52 Aligned_cols=23 Identities=17% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 290
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.68 E-value=0.0009 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999754
No 291
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.67 E-value=0.00093 Score=53.28 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 292
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.65 E-value=0.0015 Score=60.50 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=28.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC-----C--C-CCCccEEEECC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP-----D--D-CIIDGDIRVNG 51 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~-----~--~-~~~~G~I~i~G 51 (290)
|-.++|+|.+|+|||||++.|+|-.. | + ....|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998331 0 0 12357787766
No 293
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.65 E-value=0.00071 Score=55.38 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=18.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998643
No 294
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.65 E-value=0.00093 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999988643
No 295
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.64 E-value=0.0011 Score=56.25 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|-+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999864
No 296
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.64 E-value=0.00096 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 297
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.63 E-value=0.00096 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
No 298
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.62 E-value=0.00084 Score=53.01 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.62 E-value=0.001 Score=55.12 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++.+++|+|++||||||+.+.|+..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 300
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.62 E-value=0.001 Score=53.09 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+|++|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 301
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.61 E-value=0.00074 Score=53.81 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
-++|+|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999987543
No 302
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.61 E-value=0.001 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999865
No 303
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.60 E-value=0.001 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 304
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.59 E-value=0.0011 Score=52.83 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 305
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.58 E-value=0.0011 Score=56.68 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++.+++|+|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 306
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.57 E-value=0.0011 Score=53.46 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|||||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
No 307
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.57 E-value=0.0011 Score=53.38 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 308
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.57 E-value=0.00095 Score=53.78 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 309
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.57 E-value=0.0011 Score=55.38 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
..+-+++|+|+.||||||+.+.|+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44668999999999999999999864
No 310
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.57 E-value=0.001 Score=60.07 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999864
No 311
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.57 E-value=0.0012 Score=55.70 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 312
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.57 E-value=0.0011 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998743
No 313
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.55 E-value=0.00085 Score=55.02 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.8
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 314
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.55 E-value=0.00099 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 315
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.54 E-value=0.0014 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 316
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.54 E-value=0.0013 Score=54.09 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 317
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.53 E-value=0.0012 Score=57.60 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.++|+|++|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999999999998643
No 318
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.53 E-value=0.001 Score=54.68 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 319
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.52 E-value=0.0011 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 320
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.51 E-value=0.0017 Score=52.31 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.-.++|+|++|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568999999999999999998743
No 321
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.50 E-value=0.0011 Score=54.23 Aligned_cols=23 Identities=52% Similarity=0.615 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|||||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 322
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.50 E-value=0.0013 Score=53.44 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 323
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.50 E-value=0.0011 Score=53.30 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 324
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.49 E-value=0.0015 Score=55.30 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999987543
No 325
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.49 E-value=0.0013 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 326
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.48 E-value=0.0016 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 327
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.48 E-value=0.0013 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 328
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.48 E-value=0.0015 Score=55.23 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.47 E-value=0.0016 Score=54.34 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
..+++|+|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 330
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.47 E-value=0.0015 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
No 331
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.46 E-value=0.0014 Score=52.34 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
=.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 332
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.46 E-value=0.0015 Score=53.43 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
-++|+|+.|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4799999999999999999987654
No 333
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.46 E-value=0.0012 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 334
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.45 E-value=0.0014 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 335
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.45 E-value=0.0014 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
No 336
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.45 E-value=0.0016 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
..+++|+|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.43 E-value=0.0018 Score=56.73 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
No 338
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.42 E-value=0.0013 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 339
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.42 E-value=0.0015 Score=51.79 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999753
No 340
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.42 E-value=0.0013 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999864
No 341
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.39 E-value=0.0016 Score=52.48 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 342
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.39 E-value=0.00085 Score=54.45 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44689999999999999998874
No 343
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.39 E-value=0.0016 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998753
No 344
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.39 E-value=0.0017 Score=58.47 Aligned_cols=27 Identities=48% Similarity=0.601 Sum_probs=23.1
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++.| .++|+|++|+|||||++.|.|..
T Consensus 5 ~~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 5 TYSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp CEEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 3455 69999999999999999999853
No 345
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.38 E-value=0.0017 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
No 346
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.38 E-value=0.0018 Score=56.42 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
No 347
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.38 E-value=0.0019 Score=57.46 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
...+.|.||+|+|||||.++|++...+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 468999999999999999999987654
No 348
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.37 E-value=0.0015 Score=52.53 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 349
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.36 E-value=0.0017 Score=53.10 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
No 350
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.36 E-value=0.0015 Score=57.38 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999864
No 351
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.35 E-value=0.0019 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.-+++|+|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 352
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.34 E-value=0.0018 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 353
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.33 E-value=0.0016 Score=60.43 Aligned_cols=21 Identities=48% Similarity=0.711 Sum_probs=19.8
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
No 354
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.32 E-value=0.0023 Score=55.61 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++-+++|+||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999853
No 355
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.32 E-value=0.0018 Score=54.32 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|+|||||++.+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 356
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.31 E-value=0.0014 Score=57.85 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999988753
No 357
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.30 E-value=0.0019 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
No 358
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.29 E-value=0.002 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 359
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.28 E-value=0.0034 Score=53.44 Aligned_cols=29 Identities=41% Similarity=0.422 Sum_probs=24.7
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+....|..++|+||+|||||||...|+..
T Consensus 29 ~v~~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 29 LVDIYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44457889999999999999999998864
No 360
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.28 E-value=0.0018 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 361
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.28 E-value=0.002 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
No 362
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.27 E-value=0.002 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 363
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.27 E-value=0.0026 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999998754
No 364
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.27 E-value=0.0025 Score=53.14 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999997654
No 365
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.25 E-value=0.0024 Score=54.59 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+++|+|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
No 366
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.0019 Score=53.06 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 367
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.24 E-value=0.0022 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
No 368
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.24 E-value=0.0021 Score=52.42 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.=.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998754
No 369
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.23 E-value=0.0022 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 370
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.23 E-value=0.0022 Score=56.29 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 371
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.22 E-value=0.0016 Score=54.18 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
No 372
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.22 E-value=0.002 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 373
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.21 E-value=0.0012 Score=59.30 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=19.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998643
No 374
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.21 E-value=0.002 Score=55.98 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 375
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.002 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 376
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.20 E-value=0.0037 Score=56.79 Aligned_cols=31 Identities=35% Similarity=0.356 Sum_probs=25.9
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+..+.+ .|.-++|+|+||+|||||...|.+.
T Consensus 137 ~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 137 GVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp SEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 444455 7889999999999999999998874
No 377
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.20 E-value=0.0013 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 378
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.19 E-value=0.0022 Score=57.02 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 379
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.19 E-value=0.0025 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 380
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.18 E-value=0.0025 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998643
No 381
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.18 E-value=0.0024 Score=52.94 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 382
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.18 E-value=0.0022 Score=56.81 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 383
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.17 E-value=0.0043 Score=56.91 Aligned_cols=26 Identities=38% Similarity=0.644 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46799999999999999999999765
No 384
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.16 E-value=0.0024 Score=53.81 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.++|+|+.|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 385
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.16 E-value=0.0026 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 386
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.15 E-value=0.0026 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998643
No 387
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.14 E-value=0.0022 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 388
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.13 E-value=0.0024 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
No 389
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.12 E-value=0.0024 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
No 390
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.12 E-value=0.0027 Score=52.09 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 391
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.12 E-value=0.0025 Score=56.88 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 392
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0024 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999999754
No 393
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0027 Score=51.82 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 394
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0028 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 395
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.11 E-value=0.0028 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 396
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.10 E-value=0.0019 Score=56.53 Aligned_cols=34 Identities=26% Similarity=0.196 Sum_probs=23.8
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..|.+ ...++.+++|.|+.||||||+.+.|+..+
T Consensus 15 ~~~~~-~~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 15 FSASS-EGTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp ---------CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred Ccccc-cccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34444 34678899999999999999999988765
No 397
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.10 E-value=0.0028 Score=52.74 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.=-++|+|+.|+|||||++.+.+-.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998653
No 398
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.09 E-value=0.0026 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998643
No 399
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.0027 Score=51.96 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
=.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35799999999999999999963
No 400
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.08 E-value=0.0026 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 401
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.08 E-value=0.0025 Score=52.97 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 402
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.08 E-value=0.0029 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
=-++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999998754
No 403
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.08 E-value=0.0033 Score=55.82 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHHc
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G 35 (290)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 404
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.07 E-value=0.0037 Score=53.44 Aligned_cols=29 Identities=41% Similarity=0.651 Sum_probs=24.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
-+|.+++|.|++||||||+.+.|+..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999876653
No 405
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.07 E-value=0.003 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+|-.++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998643
No 406
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.07 E-value=0.0027 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-.++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 407
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.06 E-value=0.0032 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.06 E-value=0.003 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999863
No 409
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.05 E-value=0.002 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 410
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.0026 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999887643
No 411
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.04 E-value=0.0031 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
-++|+|++|+|||||++.+.+...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4799999999999999999986543
No 412
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.04 E-value=0.0024 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 413
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.03 E-value=0.0025 Score=51.92 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999974
No 414
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.00 E-value=0.0035 Score=51.77 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=20.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.=-++|+|+.|+|||||++.+.+-.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998653
No 415
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.003 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 416
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.98 E-value=0.0035 Score=51.49 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999999888643
No 417
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.97 E-value=0.0034 Score=50.71 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=21.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+..+.|.||+|+|||||++.++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998754
No 418
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.95 E-value=0.0044 Score=53.13 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
..+..+.|+|+.||||||+.+.|+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999864
No 419
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.94 E-value=0.0044 Score=59.28 Aligned_cols=30 Identities=23% Similarity=0.578 Sum_probs=25.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.+-+|+..+|+||+|+|||||++.|+....
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 356899999999999999999999886543
No 420
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.94 E-value=0.0036 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998654
No 421
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.94 E-value=0.0032 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 422
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.93 E-value=0.0045 Score=51.77 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=30.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
+|.++++||.-. +|+.....+.+.+.+. ..+..+|++|+++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 578999999765 7888777777776543 23677888888753
No 423
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.93 E-value=0.003 Score=55.82 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|..|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999865
No 424
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.93 E-value=0.0035 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 425
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.93 E-value=0.0039 Score=57.25 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=21.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999764
No 426
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.92 E-value=0.0023 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=9.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
No 427
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.92 E-value=0.003 Score=53.32 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.9
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998753
No 428
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.92 E-value=0.0033 Score=54.43 Aligned_cols=29 Identities=34% Similarity=0.555 Sum_probs=21.9
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
..+|.+++|.|++||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999987654
No 429
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.91 E-value=0.0038 Score=58.72 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+..++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999998853
No 430
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.88 E-value=0.0058 Score=52.13 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=42.4
Q ss_pred HhCCCeEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHH---------HHhhcCeEEEEe
Q psy2520 145 LTDPALLLCDEPTT----GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE---------LIDMFDKIILLA 205 (290)
Q Consensus 145 ~~~p~llllDEPts----gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~---------~~~~~d~v~~l~ 205 (290)
..+|+++++|--+. .-|.....+++..|+.++++.|.++++++|-.... +...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 46889999986432 22455667788888888778899999998853211 234688888775
No 431
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.88 E-value=0.0042 Score=54.06 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999876543
No 432
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.88 E-value=0.013 Score=65.01 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=25.9
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
=+.+|+++.|.|++|+|||||+..++....
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a 757 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999988876443
No 433
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.88 E-value=0.0054 Score=55.77 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=22.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.+++|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999754
No 434
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.86 E-value=0.0036 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999753
No 435
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.85 E-value=0.0051 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+..++.|+||.||||+|..+.|+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44568899999999999999999854
No 436
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.83 E-value=0.0039 Score=54.59 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 437
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.82 E-value=0.0034 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
=-++|+|+.|+|||||++.+.+-
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998753
No 438
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.79 E-value=0.0041 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999865
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.78 E-value=0.0082 Score=49.97 Aligned_cols=29 Identities=31% Similarity=0.259 Sum_probs=24.2
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHc
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
++..-.|.-++|.|+||+|||||...|..
T Consensus 10 s~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 10 NFLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44455788999999999999999887764
No 440
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.78 E-value=0.0041 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 441
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.76 E-value=0.0053 Score=52.54 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
+|.++++-|++||||||+.+.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999876653
No 442
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0051 Score=52.28 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 443
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.76 E-value=0.0052 Score=56.04 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999754
No 444
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.72 E-value=0.0057 Score=52.67 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
|.+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999997653
No 445
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.70 E-value=0.0066 Score=52.39 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999987553
No 446
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.70 E-value=0.005 Score=51.98 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.++|+|+.|+|||||++.++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999888643
No 447
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.68 E-value=0.0022 Score=53.87 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988864
No 448
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.68 E-value=0.0044 Score=58.86 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999984
No 449
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.67 E-value=0.0058 Score=52.43 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=25.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+|.++++-|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999987654
No 450
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.64 E-value=0.0023 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=4.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998875
No 451
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.64 E-value=0.0051 Score=51.21 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998653
No 452
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.64 E-value=0.0055 Score=54.04 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.++++|.+|+|||||+|.|.|....
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred heEEeCCCCCCHHHHHHHHhccccc
Confidence 7899999999999999999987543
No 453
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.63 E-value=0.0018 Score=66.09 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=28.4
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
++.+.+++.++|.||+|+|||||.++|++...
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 45677899999999999999999999998764
No 454
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.62 E-value=0.036 Score=48.10 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=41.1
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCC---------CcHHHHhhcCeEEEEe
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ---------PSSELIDMFDKIILLA 205 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~---------~~~~~~~~~d~v~~l~ 205 (290)
.+.+++++||----.| +.++++.+ .+.|+.||++.++ ....+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l-~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAM-ANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHH-HHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHH-HhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999977654 44555554 3358999999999 6667889999999874
No 455
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.59 E-value=0.0068 Score=50.46 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=36.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc---------HHHHhhcCeEEEEeC
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS---------SELIDMFDKIILLAD 206 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~---------~~~~~~~d~v~~l~~ 206 (290)
+++++++||--. +++ .+.+.|+.+..+ |..|+++.++.+ ..+..++|.+.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999743 443 355667766444 889999888432 345667998877753
No 456
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.58 E-value=0.02 Score=55.03 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=54.1
Q ss_pred CCCCChHHHHHHHHHHHH--Hh---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCC
Q psy2520 127 KVVLSGGERKRLSFATEL--LT---------------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL--~~---------------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~ 189 (290)
.+.+||||+|-.-+|.+. +. .-.+++|||. +-+|.......+++++++ |.-+|+++=+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP~ 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAPE 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEESS
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECcc
Confidence 456999999965544433 22 2257999999 999999999999999987 6788888865
Q ss_pred CcHHHHhhcCeEEEEe
Q psy2520 190 PSSELIDMFDKIILLA 205 (290)
Q Consensus 190 ~~~~~~~~~d~v~~l~ 205 (290)
.+..+.|.++.+-
T Consensus 452 ---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 ---NISPERGTTYKLV 464 (483)
T ss_dssp ---SCCCSSSEEEECC
T ss_pred ---hhhhccCceEEEE
Confidence 2456778877764
No 457
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.57 E-value=0.0062 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 458
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.56 E-value=0.0034 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.0
Q ss_pred CeEEEEECCCCChHHHHHHHHHc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
.=-++|+|+.|+|||||++.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34689999999999999999864
No 459
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.0056 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 460
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.56 E-value=0.0056 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
=.++|+|+.|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999988854
No 461
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.54 E-value=0.0073 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++.|+||.||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 462
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.48 E-value=0.0086 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999999654
No 463
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.47 E-value=0.0062 Score=50.74 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
No 464
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.43 E-value=0.007 Score=54.53 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=36.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 201 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v 201 (290)
++.++++|| ...+++.....+.+.+.+. .. ...+|++++++......+.+|+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~-~~-~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETY-SG-VTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHT-TT-TEEEEEEESCGGGSCHHHHHHS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhc-CC-CceEEEEeCchhhCcchhhccC
Confidence 567999999 7889999888888888876 33 4557777766543233344443
No 465
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.32 E-value=0.009 Score=49.33 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=29.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
++.++++||. ..+++.....+...+... . .+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-S-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-T-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-C-CCCeEEEEeCCh
Confidence 6789999995 557777777777777664 2 356677777664
No 466
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.29 E-value=0.0087 Score=47.43 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=29.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
+..+|++||. ..|++..+..++..|... ..+..+|++|..+
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 3467999998 468888888888888443 2345677777754
No 467
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.26 E-value=0.0094 Score=55.97 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=21.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.+++|+||+|||||||...|+..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998654
No 468
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.26 E-value=0.0074 Score=54.78 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998765
No 469
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.22 E-value=0.0044 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999999753
No 470
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.17 E-value=0.011 Score=52.48 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++..+.|.||+|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999888755
No 471
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.16 E-value=0.01 Score=54.41 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=22.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.-+++|+|+.|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999987653
No 472
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.11 E-value=0.013 Score=53.38 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=24.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHc
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3577888999999999999999998874
No 473
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.08 E-value=0.0096 Score=55.74 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+|.+++|||||++.|+|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
No 474
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.07 E-value=0.012 Score=53.23 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
No 475
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.02 E-value=0.013 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+...+.|.||+|+|||||.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4457889999999999999999975
No 476
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.01 E-value=0.01 Score=56.04 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 477
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.00 E-value=0.0041 Score=51.61 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
-++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 479999999999999988875
No 478
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.95 E-value=0.015 Score=52.36 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=22.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
+.-+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987543
No 479
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.93 E-value=0.013 Score=53.21 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
+|..+.|.||+|+|||||.+.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 466899999999999999999997654
No 480
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.91 E-value=0.008 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHH-HHcC
Q psy2520 15 LVAIMGASGAGKSTLLAA-LSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~-l~G~ 36 (290)
.++|+|+.|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999998 5554
No 481
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.91 E-value=0.014 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-.+||+|+.||||||+.+.|+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999854
No 482
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.90 E-value=0.018 Score=51.70 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=21.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+--++|+|++|+|||||++.+.+-.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458999999999999999988753
No 483
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.89 E-value=0.016 Score=55.04 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999976654
No 484
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.88 E-value=0.017 Score=48.92 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=23.0
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
|.+++|=|+-||||||+.+.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999997664
No 485
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.88 E-value=0.015 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
-.++|+|.+|+|||||+|.|.|...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 3689999999999999999998653
No 486
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.87 E-value=0.0078 Score=55.11 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 487
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.83 E-value=0.012 Score=56.31 Aligned_cols=24 Identities=54% Similarity=0.682 Sum_probs=21.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
|=.++|+|++|+|||||++.|+|.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 445899999999999999999984
No 488
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.81 E-value=0.016 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+..-+.|.||+|+|||+|.++++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456899999999999999999875
No 489
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.78 E-value=0.015 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.9
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.-+.|.||+|+|||||.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999765
No 490
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.74 E-value=0.014 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.9
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..+.|.||+|+|||+|.++|+..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467788999999999999999754
No 491
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.73 E-value=0.014 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++..++++|++|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 3556899999999999999999986
No 492
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.70 E-value=0.015 Score=53.12 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++.-+.|.||+|+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999765
No 493
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.68 E-value=0.017 Score=52.62 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+..+.|.||.|+|||||++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998754
No 494
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.65 E-value=0.011 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=23.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+++|+|++|+||||+...|++.+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987653
No 495
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.64 E-value=0.0026 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999888643
No 496
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.61 E-value=0.014 Score=56.85 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.9
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
No 497
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.58 E-value=0.02 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
|.++.|.||.|+|||||++.++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999998753
No 498
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.56 E-value=0.014 Score=57.54 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.9
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.++|+|+.|+|||||+|.|+|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 468999999999999999999964
No 499
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.54 E-value=0.01 Score=56.43 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+.|.||+|+|||||.++|+.....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4899999999999999999987643
No 500
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.40 E-value=0.02 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
..+.|.||+|+|||||++.++....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999987643
Done!