RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2520
(290 letters)
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 342 bits (879), Expect = e-114
Identities = 131/273 (47%), Positives = 186/273 (68%), Gaps = 4/273 (1%)
Query: 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-FRSACGFM 65
+G A G L+A+MG+SGAGK+TL+ AL+ R P G + +NG P++ K R+ ++
Sbjct: 45 SGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYV 104
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q DLF P+LTV EHL F A L++ RRV ++ ++ +L LGL +TRIG
Sbjct: 105 QQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPG-- 162
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
+ LSGGERKRL+FA+ELLTDP LL CDEPT+GLDSF A ++++++ L +Q+ KT++C
Sbjct: 163 RVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL-AQKGKTIIC 221
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAV 245
TIHQPSSEL ++FDKIIL+A+ R A++GS D A+ F G+PCP YNPADF ++ LAV
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAV 281
Query: 246 TTNDELSSRRRLKRICDEFSVCDFAKEVDLEIN 278
E SR R+++ICD F+V D +++ + N
Sbjct: 282 IPGSENESRERIEKICDSFAVSDIGRDMLVNTN 314
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 199 bits (509), Expect = 8e-64
Identities = 81/204 (39%), Positives = 126/204 (61%), Gaps = 11/204 (5%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-GKFRSACGFMYQHDL 70
SG ++AI+G+SG+GK+TLL A+S R+ G I NG+P + +F+ ++ Q D+
Sbjct: 32 SGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDI 91
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALI-NSLLIELGLMNSQHTRIGSSSITQKVV 129
P LTV E L + A+L+L R+ R + + LL +L TRIG + +
Sbjct: 92 LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA-----LTRIGGNLVKG--- 143
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
+SGGER+R+S A +LL DP +L+ DEPT+GLDSF+A L+ + +L ++R + V+ TIHQ
Sbjct: 144 ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL-ARRNRIVILTIHQ 202
Query: 190 PSSELIDMFDKIILLADSRTAFIG 213
P S+L +FD+I+LL+ + G
Sbjct: 203 PRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 192 bits (490), Expect = 2e-61
Identities = 81/210 (38%), Positives = 119/210 (56%), Gaps = 43/210 (20%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-EGKFRSACG 63
++G A G L AIMG SGAGKSTLL AL+ R + G++ +NG+P+ + FR G
Sbjct: 27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDKRSFRKIIG 85
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++ Q D+ P+LTV E L F A L+
Sbjct: 86 YVPQDDILHPTLTVRETLMFAAKLR----------------------------------- 110
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGERKR+S A EL+++P+LL DEPT+GLDS SA +++ ++R L + +T+
Sbjct: 111 -----GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL-ADTGRTI 164
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIG 213
+C+IHQPSSE+ ++FDK++LL+ R + G
Sbjct: 165 ICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 182 bits (464), Expect = 4e-53
Identities = 99/252 (39%), Positives = 156/252 (61%), Gaps = 6/252 (2%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
+TG A G ++A++G SG+GKSTLL AL+ R+ + G I N + + GF+
Sbjct: 87 VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFT-GTILANNRKPTKQILKRTGFV 145
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q D+ P LTV E L F +LL+L + + ++I + S++ ELGL ++T IG+S I
Sbjct: 146 TQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIR 205
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
+SGGERKR+S A E+L +P+LL+ DEPT+GLD+ +A +L+ + L +Q+ KT++
Sbjct: 206 G---ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL-AQKGKTIVT 261
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIK-SLA 244
++HQPSS + MFD +++L++ R F G A+A+ ES G+ + NPADFL+ +
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANG 321
Query: 245 VTTNDELSSRRR 256
V D +S R +
Sbjct: 322 VCQTDGVSEREK 333
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 166 bits (423), Expect = 4e-50
Identities = 71/219 (32%), Positives = 109/219 (49%), Gaps = 18/219 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQH 68
G + ++G +GAGK+TLL L+ L G+I V G V K R G++ Q
Sbjct: 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQE 86
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
P LTV E+L F A L + +A +RI LL GL + + ++ +
Sbjct: 87 PSLYPELTVRENLEFFARLYGLSKEEAEERI---EELLELFGLEDKANKKVRT------- 136
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG ++RLS A LL DP LL+ DEPT+GLD S ++ ++REL + T+L + H
Sbjct: 137 -LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195
Query: 189 QPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGY 227
E ++ D++I+L D + G+ + +G
Sbjct: 196 I-LEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 153 bits (390), Expect = 3e-46
Identities = 71/201 (35%), Positives = 108/201 (53%), Gaps = 42/201 (20%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGF 64
++G GTL A+MG SGAGK+TLL L+ R +I G+I +NG+P++ F+ + G+
Sbjct: 25 NISGYVKPGTLTALMGESGAGKTTLLDVLAGR-KTAGVITGEILINGRPLDKNFQRSTGY 83
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ Q D+ SP+LTV E L F ALL+
Sbjct: 84 VEQQDVHSPNLTVREALRFSALLR------------------------------------ 107
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LS +RKRL+ EL P++L DEPT+GLDS +A ++R +++L + +L
Sbjct: 108 ----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQAIL 162
Query: 185 CTIHQPSSELIDMFDKIILLA 205
CTIHQPS+ + + FD+++LL
Sbjct: 163 CTIHQPSASIFEKFDRLLLLK 183
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
[Transport and binding proteins, Other].
Length = 1394
Score = 160 bits (407), Expect = 3e-44
Identities = 87/243 (35%), Positives = 141/243 (58%), Gaps = 12/243 (4%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGF 64
+ G GTL A+MGASGAGK+TLL L++R+ I GD VNG+P++ F+ + G+
Sbjct: 781 NVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGY 840
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ Q DL P+ TV E L F A L+ + V +++ + ++ L + + +G
Sbjct: 841 VQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE 900
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLL-CDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
L+ +RKRL+ EL+ P LLL DEPT+GLDS +A + ++MR+L + + +
Sbjct: 901 G----LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL-ADHGQAI 955
Query: 184 LCTIHQPSSELIDMFDKIILLAD-SRTAFIG--SKDAA--LAFLESQGYP-CPYGYNPAD 237
LCTIHQPS+ L + FD+++LL +T + G +++ + + E G P CP NPA+
Sbjct: 956 LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAE 1015
Query: 238 FLI 240
+++
Sbjct: 1016 WML 1018
Score = 127 bits (321), Expect = 6e-33
Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 18/239 (7%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGDIRVNGKP---VEGKFRSACGFMYQH 68
G L ++G G+G STLL ++ I ++G I +G ++ +R + +
Sbjct: 87 GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAET 146
Query: 69 DLFSPSLTVYEHLYFMALLK--------LDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
D+ P LTV E L F A K + R A + + GL ++++T++G
Sbjct: 147 DVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVY---MATYGLSHTRNTKVG 203
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
+ + +SGGERKR+S A L + D T GLDS +A + IR ++ +
Sbjct: 204 NDFVRG---VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILD 260
Query: 181 KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFL 239
T L I+Q S + ++FDK+I+L + + G D A + E G+ CP ADFL
Sbjct: 261 TTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFL 319
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 141 bits (357), Expect = 9e-38
Identities = 76/201 (37%), Positives = 126/201 (62%), Gaps = 6/201 (2%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP-VEGKFRSACG 63
E+TGA G L A+MG SGAGK+TL+ L+ R I+GDIR++G P + F G
Sbjct: 898 EVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFPKKQETFARISG 956
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+ Q+D+ SP +TV E L + A L+L + V +++ ++ ++ + L N + +G
Sbjct: 957 YCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG 1016
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+T LS +RKRL+ A EL+ +P+++ DEPT+GLD+ +A+ ++R +R T +TV
Sbjct: 1017 VTG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTV 1072
Query: 184 LCTIHQPSSELIDMFDKIILL 204
+CTIHQPS ++ + FD+++L+
Sbjct: 1073 VCTIHQPSIDIFEAFDELLLM 1093
Score = 99.5 bits (248), Expect = 3e-23
Identities = 78/256 (30%), Positives = 129/256 (50%), Gaps = 39/256 (15%)
Query: 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF--RSACGFMYQHDLFSPSL 75
++G +GK+TLL AL+ +L + G+I NG + +F R ++ Q+D+ +
Sbjct: 196 LLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLN-EFVPRKTSAYISQNDVHVGVM 254
Query: 76 TVYEHLYFMA-----------LLKLDRR---------------VKAYQRIALINSLLIE- 108
TV E L F A L +L RR +KA + +SL+ +
Sbjct: 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDY 314
Query: 109 ----LGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA-LLLCDEPTTGLDSF 163
LGL + T +G I +SGG++KR++ E++ P L DE +TGLDS
Sbjct: 315 TLKILGLDICKDTIVGDEMIRG---ISGGQKKRVT-TGEMIVGPTKTLFMDEISTGLDSS 370
Query: 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 223
+ ++++ ++++ + TVL ++ QP+ E D+FD IILL++ + + G +D L F E
Sbjct: 371 TTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFE 430
Query: 224 SQGYPCPYGYNPADFL 239
S G+ CP ADFL
Sbjct: 431 SCGFKCPERKGTADFL 446
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 120 bits (302), Expect = 5e-33
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 37/211 (17%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSAC 62
+G G +V ++G G+G STLL AL+ R + ++GDI NG P + K+
Sbjct: 26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEI 85
Query: 63 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
++ + D+ P+LTV E L F K + V+
Sbjct: 86 IYVSEEDVHFPTLTVRETLDFALRCKGNEFVR---------------------------- 117
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
+SGGERKR+S A L++ ++L D T GLDS +A ++++ +R + K T
Sbjct: 118 ------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIG 213
+++Q S E+ D+FDK+++L + R + G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 120 bits (303), Expect = 5e-33
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 33/207 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIID----GDIRVNGKPVEG-------KFR-S 60
G VAI+G SG+GKSTLL L +D G++ +NGK + K R
Sbjct: 31 GEFVAIVGPSGSGKSTLLNLLGG-------LDKPTSGEVLINGKDLTKLSEKELAKLRRK 83
Query: 61 ACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
GF++Q +L P LTV E++ L+ A +R LL LGL + +
Sbjct: 84 KIGFVFQNFNLL-PDLTVLENVELPLLI---AGKSAGRRKRAAEELLEVLGLEDRLLKK- 138
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
++ LSGG+++R++ A L+ +P ++L DEPT LDS +A +++ ++REL +R
Sbjct: 139 ---KPSE---LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER 192
Query: 180 KKTVLCTIHQPSSELIDMFDKIILLAD 206
KT++ H P EL D++I L D
Sbjct: 193 GKTIIMVTHDP--ELAKYADRVIELKD 217
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 116 bits (294), Expect = 8e-32
Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 27/204 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ- 67
G V I+G +G+GKSTLL L+ L G++ V+GK + + R G ++Q
Sbjct: 27 GEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVLVDGKDLTKLSLKELRRKVGLVFQN 83
Query: 68 --HDLFSPSLTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
F P TV E + F + L L + + L +GL + +
Sbjct: 84 PDDQFFGP--TVEEEVAFGLENLGLPE----EEIEERVEEALELVGLEGLRDRSPFT--- 134
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+++R++ A L DP +LL DEPT GLD +L+ ++++L ++ K ++
Sbjct: 135 -----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIII 189
Query: 185 CTIHQPSSELIDMFDKIILLADSR 208
T H L+++ D++I+L D +
Sbjct: 190 VT-HDL-DLLLELADRVIVLEDGK 211
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 116 bits (294), Expect = 1e-31
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 32/206 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSA-CGF 64
G VAI+G SG+GKSTLL L G++RV+G + FR GF
Sbjct: 30 GEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGF 86
Query: 65 MYQHDLFSPSLTVYEH----LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
++Q P LT E+ L + K +RR +A + LL +GL + +
Sbjct: 87 VFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEE-------LLERVGLGDRLNHYPS 139
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG+++R++ A L DP ++L DEPT LDS + +++ ++REL +
Sbjct: 140 E--------LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG 191
Query: 181 KTVLCTIHQPSSELIDMFDKIILLAD 206
T++ H P EL + D+II L D
Sbjct: 192 TTIVVVTHDP--ELAEYADRIIELRD 215
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 113 bits (285), Expect = 2e-30
Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 24/207 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC----GFMYQH 68
G + ++G +GAGK+T L L+ L G +NG + R A G+ Q
Sbjct: 28 GEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGYSI-RTDRKAARQSLGYCPQF 83
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
D LTV EHL F A LK + + + LL LGL + + R +
Sbjct: 84 DALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRART------- 133
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG +++LS A L+ P++LL DEPT+GLD S + ++ E+ R +++ T H
Sbjct: 134 -LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR--SIILTTH 190
Query: 189 QPSSELIDMF-DKIILLADSRTAFIGS 214
S + + D+I +++D + IGS
Sbjct: 191 --SMDEAEALCDRIAIMSDGKLRCIGS 215
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 109 bits (274), Expect = 6e-29
Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 17 AIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSP 73
++G +GAGK+TL+ L+ P G IR++G+ V K R G++ Q P
Sbjct: 29 GLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYP 85
Query: 74 SLTVYEHLYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
+ TV E L ++A LK + VKA ++ +L + L + +IGS LS
Sbjct: 86 NFTVREFLDYIAWLKGIPSKEVKAR-----VDEVLELVNLGDRAKKKIGS--------LS 132
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
GG R+R+ A L+ DP++L+ DEPT GLD + ++ EL R V+ + H
Sbjct: 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDR--IVILSTHI-V 189
Query: 192 SELIDMFDKIILLADSRTAFIG 213
++ + +++ +L + F G
Sbjct: 190 EDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 106 bits (267), Expect = 3e-28
Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 55/200 (27%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQH 68
G + ++G +GAGK+TL+ + L D G+I+V GK + + + G++ +
Sbjct: 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEE 81
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
+LTV E+L
Sbjct: 82 PSLYENLTVRENLK---------------------------------------------- 95
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG ++RL+ A LL DP LL+ DEPT+GLD S + ++REL + KT+L + H
Sbjct: 96 -LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL-KKEGKTILLSSH 153
Query: 189 QPSSELIDMFDKIILLADSR 208
E + D++ +L + R
Sbjct: 154 IL-EEAERLCDRVAILNNGR 172
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 107 bits (269), Expect = 7e-28
Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 27/218 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G ++AI+G SG+GKSTLL + L D G++ ++G+ + G + R G +
Sbjct: 26 GEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGML 82
Query: 66 YQHD-LFSPSLTVYEHLYFMAL--LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
+Q LF SLTV+E++ F +L + I L L +GL ++
Sbjct: 83 FQSGALFD-SLTVFENVAFPLREHTRLSEEE--IREIVL--EKLEAVGLRGAEDLYPAE- 136
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGG +KR++ A L DP LLL DEPT GLD ++ + ++R L + T
Sbjct: 137 -------LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLT 189
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
+ H + D+I +L D + G+ + A
Sbjct: 190 SIMVTHD-LDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 106 bits (267), Expect = 8e-28
Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 25/201 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G +AI+G +GAGKSTLL A+ L G IRV GKP+E K R G++ Q
Sbjct: 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE-KERKRIGYVPQRRSI 79
Query: 72 SPS--LTVYEHLYFMALLKLDRRVKAYQRI-----ALINSLLIELGLMNSQHTRIGSSSI 124
++V + + L+ L ++R+ A ++ L +GL +IG
Sbjct: 80 DRDFPISVRD----VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGE--- 132
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+++R+ A L+ DP LLL DEP G+D + + ++REL + T+L
Sbjct: 133 -----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTIL 186
Query: 185 CTIHQPSSELIDMFDKIILLA 205
H +++ FD+++LL
Sbjct: 187 VVTHDLGL-VLEYFDRVLLLN 206
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 106 bits (268), Expect = 2e-27
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 38/224 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAA-LSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGF 64
G ++AI+G SG+GKSTLL L PD G+I ++G+ + + R G
Sbjct: 34 GEILAILGGSGSGKSTLLRLILGLLRPDK----GEILIDGEDIPQLSEEELYEIRKRMGV 89
Query: 65 MYQHD-LFSPSLTVYEHLYFM--ALLKLDRRVKAYQRIALINSLLIELG-----LMNSQH 116
++Q LFS SLTV+E++ F KL + + + L+ L+ L L S+
Sbjct: 90 LFQQGALFS-SLTVFENVAFPLREHTKLPESL--IRELVLMKLELVGLRGAAADLYPSE- 145
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
LSGG RKR++ A + DP LL DEPT+GLD SA + ++REL
Sbjct: 146 -------------LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELN 192
Query: 177 SQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
TV+ H S L+ + D++ +LAD + G+ + LA
Sbjct: 193 DALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGTPEELLA 235
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 105 bits (264), Expect = 5e-27
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 25/201 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC-GFMYQHDL 70
G + A++G +GAGKSTLL A+ L G+I++ GKPV + + G++ Q
Sbjct: 29 KGEITALIGPNGAGKSTLLKAILGLLKPSS---GEIKIFGKPVRKRRKRLRIGYVPQKSS 85
Query: 71 FSPS--LTVYEHLYFMAL-----LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
S +TV + + L RR+ + ++ L +G+ + + +IG
Sbjct: 86 VDRSFPITVKD---VVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIGE-- 139
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGG+++R+ A L +P LLL DEP TG+D ++ +++EL Q KTV
Sbjct: 140 ------LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL-RQEGKTV 192
Query: 184 LCTIHQPSSELIDMFDKIILL 204
L H ++ FD++I L
Sbjct: 193 LMVTHDL-GLVMAYFDRVICL 212
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 104 bits (263), Expect = 6e-27
Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 24/218 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDC----IIDGDIRVNGKPVEGKFRSACGFMYQ 67
G VA++G SGAGKSTLL L+ + I DI + R G ++Q
Sbjct: 26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQ 85
Query: 68 HDLFSPSLTVYEH-----LYFMALLK-LDRRV-KAYQRIALINSLLIELGLMNSQHTRIG 120
L+V E+ L + + L K ++ AL + L +GL++ + R
Sbjct: 86 QFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRAL--AALERVGLLDKAYQRAD 143
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG+++R++ A L+ P L+L DEP LD S+ +++ +++ + +
Sbjct: 144 Q--------LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG 195
Query: 181 KTVLCTIHQPSSELI-DMFDKIILLADSRTAFIGSKDA 217
TV+ ++HQ +L + D+I+ L D R F G
Sbjct: 196 ITVIVSLHQV--DLAREYADRIVGLKDGRIVFDGPPAE 231
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 101 bits (254), Expect = 1e-25
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 23/218 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMYQ 67
G V ++G +G+GKSTLL L+ L G++ V+G + R G ++Q
Sbjct: 30 GERVLLIGPNGSGKSTLLKLLNGLLKP---TSGEVLVDGLDTSSEKSLLELRQKVGLVFQ 86
Query: 68 H-DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+ D TV + + F L L R + L +GL +
Sbjct: 87 NPDDQLFGPTVEDEVAFGLENLGLPREEI----EERVAEALELVGLEELLDRPPFN---- 138
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGG+++R++ A L P +LL DEPT GLD +L+ ++++L + KT++
Sbjct: 139 ----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIII 194
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 223
H +++ D++++L D + G E
Sbjct: 195 VTHDL-ELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 99.7 bits (249), Expect = 3e-25
Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 27/212 (12%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQ---------RLPDDCIIDGDIRVNGKPVEGKFRSA 61
L+ + I GASGAGKSTLL ++ L + D ++N P + K
Sbjct: 21 LNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI--- 77
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
G ++Q P L V E+L F LK R + + + L L+ H + +
Sbjct: 78 -GLVFQQYALFPHLNVRENLAFG--LKRKRNREDRISVDEL------LDLLGLDH--LLN 126
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
Q LSGGE++R++ A L P LLL DEP + LD +L+ ++++
Sbjct: 127 RYPAQ---LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213
V+ H SE + D+I+++ D R +IG
Sbjct: 184 PVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 95.8 bits (239), Expect = 7e-24
Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 19/198 (9%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGD--IRVNGKPVEGKFRSACGFMY 66
G + AI+G SG+GKSTLL L + ++G +N K R G+++
Sbjct: 23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLF 82
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q+ + TV E+L LK + K ++ L ++GL +I
Sbjct: 83 QNFALIENETVEENL--DLGLKYKKLSKK-EKREKKKEALEKVGLNLKLKQKIYE----- 134
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGGE++R++ A +L P L+L DEPT LD + +++ ++ EL + KT++
Sbjct: 135 ---LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIV 190
Query: 187 IHQPSSELIDMFDKIILL 204
H P E+ D++I L
Sbjct: 191 THDP--EVAKQADRVIEL 206
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 96.9 bits (242), Expect = 8e-24
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 42/223 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G +VAI+G SGAGKSTLL +L+ + G+I NG + K R G +
Sbjct: 30 GEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGKELRKLRRDIGMI 86
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRR----------VKAYQRIALINSLLIELGLMNSQ 115
+Q P L+V E++ L +L K + AL L +G+++
Sbjct: 87 FQQFNLVPRLSVLENV---LLGRLGYTSTWRSLFGLFSKEDKAQAL--DALERVGILDKA 141
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+ R + LSGG+++R++ A L+ P ++L DEP LD SA K++ +++++
Sbjct: 142 YQRAST--------LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193
Query: 176 TSQRKKTVLCTIHQPSSELIDM----FDKIILLADSRTAFIGS 214
+ TV+ +HQ +D+ D+II L R F G
Sbjct: 194 NQEDGITVIVNLHQ-----VDLAKKYADRIIGLKAGRIVFDGP 231
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 94.6 bits (236), Expect = 1e-23
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 55/203 (27%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFM 65
+G +VA++G SG+GKSTLL ++ G I ++G+ + R G +
Sbjct: 25 AGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPPLRRRIGMV 81
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+Q P LTV E+ I LGL
Sbjct: 82 FQDFALFPHLTVLEN--------------------------IALGL-------------- 101
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
SGG+++R++ A L DP +LL DEPT+ LD + ++ +++ L +Q TV+
Sbjct: 102 -----SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVL 156
Query: 186 TIHQPSSELIDMFDKIILLADSR 208
H E + D++++L D +
Sbjct: 157 VTHDL-DEAARLADRVVVLRDGK 178
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 95.7 bits (239), Expect = 2e-23
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQ 67
G + I+G +G+GKSTLL L+ L G++ ++GK + ++ Q
Sbjct: 27 KGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKELAKKLAYVPQ 83
Query: 68 HDLFSPSLTVYE---------HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
LTVYE F K D + + L LGL +
Sbjct: 84 SPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI--------VEEALELLGLEHLADRP 135
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+ LSGGER+R+ A L + +LL DEPT+ LD +++ ++R+L +
Sbjct: 136 VDE--------LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 179 RKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGS 214
+ TV+ +H L + D +ILL D + G+
Sbjct: 188 KGLTVVMVLHDL--NLAARYADHLILLKDGKIVAQGT 222
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 93.7 bits (234), Expect = 5e-23
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 19/199 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHD- 69
G +A++G SG GK+TLL ++ D G+I ++G+ V G R G ++Q
Sbjct: 26 GEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERRNIGMVFQDYA 82
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
LF P LTV E++ F LKL R V + A + LL +GL +
Sbjct: 83 LF-PHLTVAENIAFG--LKL-RGVPKAEIRARVRELLELVGLEGLLNRYPHE-------- 130
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG+++R++ A L +P+LLL DEP + LD+ +L ++EL + T + H
Sbjct: 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190
Query: 190 PSSELIDMFDKIILLADSR 208
E + + D+I ++ + R
Sbjct: 191 Q-EEALALADRIAVMNEGR 208
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 93.7 bits (234), Expect = 6e-23
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G VA++G SG GKSTLL ++ G++ V+G+PV G G+++Q D
Sbjct: 30 GEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTGP-GPDRGYVFQQDALL 85
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
P LTV +++ L+L + V + LL +GL ++ LSG
Sbjct: 86 PWLTVLDNVAL--GLEL-QGVPKAEARERAEELLELVGLSGFENAYPHQ--------LSG 134
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G R+R++ A L DP +LL DEP + LD+ + +L + ++ + KTVL H
Sbjct: 135 GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD-ID 193
Query: 193 ELIDMFDKIILL 204
E + + D++++L
Sbjct: 194 EAVFLADRVVVL 205
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 91.3 bits (228), Expect = 1e-22
Identities = 59/202 (29%), Positives = 88/202 (43%), Gaps = 45/202 (22%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
+G +V I+G +GAGKSTLL L+ L G+I ++GK +
Sbjct: 24 AGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLA---------------- 64
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
L + A ++IA + L LGL + LS
Sbjct: 65 ----------------SLSPKELA-RKIAYVPQALELLGLAHLADRPFNE--------LS 99
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
GGER+R+ A L +P +LL DEPT+ LD +L+ ++R L +R KTV+ +H +
Sbjct: 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159
Query: 192 SELIDMFDKIILLADSRTAFIG 213
D++ILL D R G
Sbjct: 160 LAAR-YADRVILLKDGRIVAQG 180
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 93.0 bits (232), Expect = 2e-22
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G VAI+G SG GKSTLL ++ G++ ++G+PV G G+++Q D
Sbjct: 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP-DIGYVFQEDAL 83
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
P LTV +++ L+L R + LL +GL + LS
Sbjct: 84 LPWLTVLDNVAL--GLEL-RGKSKAEARERAKELLELVGLAGFEDKYPH--------QLS 132
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
GG R+R++ A L T P LLL DEP LD+ + +L + L + +KTVL H
Sbjct: 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV- 191
Query: 192 SELIDMFDKIILLAD 206
E + + D++++L++
Sbjct: 192 DEAVYLADRVVVLSN 206
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 92.0 bits (229), Expect = 3e-22
Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 30/218 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGF 64
G VAI+G SGAGKSTLL ++ RL + G I + G + K R G
Sbjct: 27 PGEFVAIIGPSGAGKSTLLRCIN-RLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGM 83
Query: 65 MYQHDLFSPSLTVYEH-----LYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHT 117
++QH LTV E+ L + + L R + + AL S L +GL + +
Sbjct: 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERAL--SALERVGLADKAYQ 141
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
R LSGG+++R++ A L P L+L DEP LD ++ +++ ++ +
Sbjct: 142 RADQ--------LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINK 193
Query: 178 QRKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGS 214
+ TV+ +HQ +L + D+I+ L F G+
Sbjct: 194 EDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 91.8 bits (229), Expect = 4e-22
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-------FRSACGFM 65
G + ++G SG+GKSTL A+ L G I +GK + R +
Sbjct: 31 GETLGLVGESGSGKSTLARAI-LGL--LKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMV 87
Query: 66 YQHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+Q + S P +T+ E + + K ++ A++ LL+ +GL + +
Sbjct: 88 FQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLL-LLVGVGL----PEEVLNRY 142
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGG+R+R++ A L +P LL+ DEPT+ LD ++++ ++++L + T+
Sbjct: 143 PHE---LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTL 199
Query: 184 L 184
L
Sbjct: 200 L 200
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 91.0 bits (226), Expect = 9e-22
Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 23/210 (10%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPV--EGKFRSACGFMY 66
+G+LVA++G SG+GKSTLL A L Q PD G IR+NG+ GF++
Sbjct: 25 TGSLVALLGPSGSGKSTLLRIIAGLEQ--PDS----GRIRLNGQDATRVHARDRKIGFVF 78
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
QH LTV +++ F L++ + KA + A + LL + L +G Q
Sbjct: 79 QHYALFKHLTVRDNIAFG--LEIRKHPKAKIK-ARVEELLELVQL-----EGLGDRYPNQ 130
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+R+R++ A L +P +LL DEP LD+ +L +R+L + T +
Sbjct: 131 ---LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV 187
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKD 216
H E +++ D+I+++++ + IGS D
Sbjct: 188 THD-QEEAMEVADRIVVMSNGKIEQIGSPD 216
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 93.5 bits (233), Expect = 2e-21
Identities = 60/197 (30%), Positives = 91/197 (46%), Gaps = 18/197 (9%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQ 67
G VA++G SGAGKSTLL L + +G I VNG P+ +R ++ Q
Sbjct: 347 PGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQ 403
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
H T+ E++ D ++ A ++ + L T IG
Sbjct: 404 HPFLFAG-TIAENIRLARPDASDAEIREALERAGLDEFVAALPQG--LDTPIGEGG---- 456
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+ +RL+ A L D LLL DEPT LD+ + ++++ +R L R TVL
Sbjct: 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGR--TVLLVT 514
Query: 188 HQPSSELIDMFDKIILL 204
H+ L + D+I++L
Sbjct: 515 HRL--ALAALADRIVVL 529
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 88.2 bits (220), Expect = 2e-21
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 52/197 (26%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G VAI+G SG+GKSTLL L + G+I ++G +
Sbjct: 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLR---------------- 67
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
LD + IA + Q + S +I ++ +LS
Sbjct: 68 ----------------DLDLESL-RKNIAYV-----------PQDPFLFSGTI-RENILS 98
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
GG+R+R++ A LL DP +L+ DE T+ LD + + ++ +R L + KTV+ H+ S
Sbjct: 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA--KGKTVIVIAHRLS 156
Query: 192 SELIDMFDKIILLADSR 208
+ I D+II+L D R
Sbjct: 157 T--IRDADRIIVLDDGR 171
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 89.3 bits (222), Expect = 2e-21
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 26/205 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-------GKFRS-ACGF 64
G +VAI+G+SG+GKSTLL L D G++ NG+ + K R+ GF
Sbjct: 31 GEIVAIVGSSGSGKSTLLHLLGGL---DNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGF 87
Query: 65 MYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+YQ H L P T E++ M LL + VK + A +L ++GL + + R
Sbjct: 88 IYQFHHLL-PDFTALENV-AMPLLIGKKSVKEAKERAY--EMLEKVGLEHRINHRPSE-- 141
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGER+R++ A L+ P+L+L DEPT LD+ +A + +M EL + +
Sbjct: 142 ------LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSF 195
Query: 184 LCTIHQPSSELIDMFDKIILLADSR 208
L H EL D+++ + D +
Sbjct: 196 LVVTHDL--ELAKKLDRVLEMKDGQ 218
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 92.6 bits (231), Expect = 3e-21
Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 22/204 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDC-IIDGDIRVNGKPV----EGKFRSACG---- 63
G ++ I+G SG+GKSTL AL LP+ I G++ ++G+ + E + R G
Sbjct: 35 GEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIA 94
Query: 64 FMYQH--DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++Q +P +T+ + + L+L + + LL ++GL + +
Sbjct: 95 MIFQDPMTSLNPVMTIGDQI--REALRLHGKGSRAEARKRAVELLEQVGLPDPERRD--- 149
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG R+R+ A L P LL+ DEPTT LD + ++++ ++++L +
Sbjct: 150 -RYPH--QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGM 206
Query: 182 TVLCTIHQPSSELI-DMFDKIILL 204
VL H ++ ++ D+++++
Sbjct: 207 AVLFITHDL--GVVAELADRVVVM 228
Score = 79.5 bits (197), Expect = 9e-17
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 24/182 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSA-----CGF 64
G + ++G SG+GKSTL L+ LP G I +G+ + G+ R F
Sbjct: 317 GETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRLRRRIQMVF 373
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ +P +TV + L L++ +R A + LL +GL
Sbjct: 374 QDPYSSLNPRMTVGDIL--AEPLRIHGGGSGAERRARVAELLELVGL---------PPEF 422
Query: 125 TQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
+ LSGG+R+R++ A L +P LL+ DEP + LD ++++ ++++L + T
Sbjct: 423 LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLT 482
Query: 183 VL 184
L
Sbjct: 483 YL 484
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 88.0 bits (219), Expect = 7e-21
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 41/212 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG------KFRSACGF 64
G +V I+G SG+GKSTLL ++ L PD G I ++G + + R G
Sbjct: 26 GEVVVIIGPSGSGKSTLLRCIN-LLEEPDS----GTIIIDGLKLTDDKKNINELRQKVGM 80
Query: 65 MYQH-DLFSPSLTVYEHLYFMALLKLDRRVKA-YQRIALINSLLIELGLMNSQHTRIGSS 122
++Q +LF P LTV E++ +A +K+ KA + AL LL ++GL +
Sbjct: 81 VFQQFNLF-PHLTVLENI-TLAPIKVKGMSKAEAEERAL--ELLEKVGLADKADAYPAQ- 135
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGG+++R++ A L +P ++L DEPT+ LD +++ +M++L ++ T
Sbjct: 136 -------LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDL-AEEGMT 187
Query: 183 VLCTIHQPSSELIDM-F-----DKIILLADSR 208
++ H +M F D++I + D R
Sbjct: 188 MVVVTH-------EMGFAREVADRVIFMDDGR 212
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 91.6 bits (228), Expect = 9e-21
Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 21/207 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G L A++GASGAGKSTLL L L G+IRVNG + +R ++ Q+
Sbjct: 347 GQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQN 403
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVK-AYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+ T+ E++ D + A + L+ + GL T IG
Sbjct: 404 PYL-FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGL----DTVIGEGGAG-- 456
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+ +RL+ A LL+ +LLL DEPT LD+ + +++ ++EL ++KTVL
Sbjct: 457 --LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA--KQKTVLVIT 512
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGS 214
H+ E D+I++L + R G+
Sbjct: 513 HRL--EDAADADRIVVLDNGRLVEQGT 537
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 86.6 bits (215), Expect = 4e-20
Identities = 73/224 (32%), Positives = 103/224 (45%), Gaps = 29/224 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA---CGFMYQH 68
G VA++G +GAGKSTL + L++ +G I V G + R+A G ++Q
Sbjct: 26 PGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQ 82
Query: 69 DLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
L+V ++L Y AL L R A RIA LL LGL ++
Sbjct: 83 PTLDLDLSVRQNLRYHAALHGLSRAE-ARARIA---ELLARLGLAERADDKVRE------ 132
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
L+GG R+R+ A LL PALLL DEPT GLD S + + +R L + +VL
Sbjct: 133 --LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWAT 190
Query: 188 H-----QPSSELIDMFDKIILLADSRTAFI----GSKDAALAFL 222
H + L+ + + +LAD A + G D AFL
Sbjct: 191 HLVDEIEADDRLV-VLHRGRVLADGAAAELRGATGGADLEAAFL 233
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 86.1 bits (214), Expect = 6e-20
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 29/188 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALS--QRLPDDCIIDGDIRVNGKPVEG-------KFRSACG 63
G + I+G SGAGKSTL+ ++ +R P G + V+G + K R G
Sbjct: 31 GEIFGIIGRSGAGKSTLIRCINGLER-PTS----GSVLVDGTDLTLLSGKELRKARRRIG 85
Query: 64 FMYQH-DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++QH +L S S TV+E++ AL L++ KA + + LL +GL +
Sbjct: 86 MIFQHFNLLS-SRTVFENV---ALPLEIAGVPKA-EIEERVLELLELVGLEDKADAYPAQ 140
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG+++R+ A L +P +LLCDE T+ LD + ++ ++R++ +
Sbjct: 141 --------LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGL 192
Query: 182 TVLCTIHQ 189
T++ H+
Sbjct: 193 TIVLITHE 200
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 86.2 bits (214), Expect = 6e-20
Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 22/185 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMY 66
G + I+G SG+GKSTL L+ G I ++GKP+ K F ++
Sbjct: 32 RGETLGIVGESGSGKSTLARLLAGLEKPSS---GSILLDGKPLAPKKRAKAFYRPVQMVF 88
Query: 67 QHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
Q S P TV L L+ K+ QRIA LL ++GL S R
Sbjct: 89 QDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQRIA---ELLDQVGLPPSFLDR----RP 139
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ LSGG+R+R++ A L+ +P LL+ DEPT+ LD ++++ ++ EL +R T L
Sbjct: 140 HE---LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYL 196
Query: 185 CTIHQ 189
H
Sbjct: 197 FISHD 201
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 88.4 bits (220), Expect = 1e-19
Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 22/214 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G VAI+G SG+GKSTLL L G I ++G + R G++ Q
Sbjct: 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQ 126
S ++ E++ D + ++A + + L G T +G
Sbjct: 556 PFLF-SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGY----DTPVGEGGAN- 609
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+R+RL+ A LL+ P +LL DE T+ LD + + +++ + ++ + +TV+
Sbjct: 610 ---LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI--LQGRTVIII 664
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I D+II+L + GS + LA
Sbjct: 665 AHRLST--IRSADRIIVLDQGKIVEQGSHEELLA 696
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 88.3 bits (219), Expect = 1e-19
Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 20/213 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF----RSACGFMYQ- 67
G VAI+G SG+GKSTL+ L RL D G+I ++G + R G + Q
Sbjct: 355 GEKVAIVGPSGSGKSTLIKLL-LRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQD 411
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
LFS T+ E++ D ++ ++A + + L + T +G +
Sbjct: 412 PLLFS--GTIRENIALGRPDATDEEIEEALKLANAHEFIANLP--DGYDTIVGERGVN-- 465
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+RL+ A LL +P +L+ DE T+ LD+ + + + +++L + +T L
Sbjct: 466 --LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIA 521
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I D+II+L + R G+ + LA
Sbjct: 522 HRLST--IKNADRIIVLDNGRIVERGTHEELLA 552
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 83.8 bits (208), Expect = 2e-19
Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 28/200 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFR-SACGFMYQ--- 67
+G ++A+ G +GAGK+TL L+ L + G I +NGKP++ K R + G++ Q
Sbjct: 25 AGEIIALTGKNGAGKTTLAKILAG-LIKES--SGSILLNGKPIKAKERRKSIGYVMQDVD 81
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+ LF+ S V E L L L ++ + L +L + +H
Sbjct: 82 YQLFTDS--VREELL----LGLKELDAGNEQAETVLKDL-DLYALKERHPLS-------- 126
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+++RL+ A LL+ LL+ DEPT+GLD + ++ ++REL +Q K V+
Sbjct: 127 --LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVIT 183
Query: 188 HQPSSELIDMF-DKIILLAD 206
H E + D+++LLA+
Sbjct: 184 HDY--EFLAKVCDRVLLLAN 201
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 81.9 bits (203), Expect = 3e-19
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG+R+R++ A LL +P LLL DEPT+GLD S +L+ ++REL ++ +TV+ H
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHD 139
Query: 190 PSSELIDMFDKIILLADSR 208
P D++I+L D +
Sbjct: 140 P-ELAELAADRVIVLKDGK 157
Score = 46.5 bits (111), Expect = 2e-06
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54
+G +VA++G +G+GKSTLL A++ L G+I ++GK +
Sbjct: 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGKDI 63
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 84.4 bits (209), Expect = 3e-19
Identities = 58/194 (29%), Positives = 102/194 (52%), Gaps = 16/194 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
SG LV ++G SG GK+TLL ++ + G I++NG+ +EG + G ++Q++
Sbjct: 30 SGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP-GAERGVVFQNEAL 85
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
P L V +++ F L+L R ++ QR + + +L +GL ++H I LS
Sbjct: 86 LPWLNVIDNVAFG--LQL-RGIEKAQRREIAHQMLALVGLEGAEHKYI--------WQLS 134
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
GG R+R+ A L +P LLL DEP LD+ + ++ ++ +L + K VL H
Sbjct: 135 GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194
Query: 192 SELIDMFDKIILLA 205
L + ++++L+
Sbjct: 195 EALF-LATRLVVLS 207
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 85.5 bits (212), Expect = 4e-19
Identities = 69/214 (32%), Positives = 107/214 (50%), Gaps = 24/214 (11%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSA-----CG 63
SG LVA++G SGAGKSTLL A L PD G IR+NG+ + A G
Sbjct: 27 SGELVALLGPSGAGKSTLLRIIAGLET--PDA----GRIRLNGRVLFDVSNLAVRDRKVG 80
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
F++QH P +TV +++ F ++ +R +A R A + LL L+ +
Sbjct: 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR-ARVEELLR---LVQLEGL--ADRY 134
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
Q LSGG+R+R++ A L +P +LL DEP LD+ +L R +R+L + T
Sbjct: 135 PAQ---LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217
+ H E +++ D++++L R +G D
Sbjct: 192 VFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDE 224
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 83.2 bits (206), Expect = 5e-19
Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 23/206 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCI--IDGDIRVNGKPVEGKFRSACGFMYQHD 69
G + ++G +GAGK+T L L+ L PD +DG V +P E + R GF+
Sbjct: 31 GEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG-FDVVKEPAEARRR--LGFVSDST 87
Query: 70 LFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
LT E+L YF L L + A + L LG+ R+G
Sbjct: 88 GLYDRLTARENLEYFAGLYGLKGD----ELTARLEELADRLGMEELLDRRVGG------- 136
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT-I 187
S G R++++ A L+ DP +LL DEPTTGLD + L +R+L + K + T I
Sbjct: 137 -FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI 195
Query: 188 HQPSSELIDMFDKIILLADSRTAFIG 213
Q L D++++L R + G
Sbjct: 196 MQEVERLC---DRVVVLHRGRVVYEG 218
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 81.2 bits (201), Expect = 2e-18
Identities = 57/208 (27%), Positives = 104/208 (50%), Gaps = 30/208 (14%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSA 61
G +V + G SG+GK+TLL L R + G ++V G+ + G + R
Sbjct: 30 PGEIVILTGPSGSGKTTLLTLIGGL--RSVQE----GSLKVLGQELYGASEKELVQLRRN 83
Query: 62 CGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
G+++Q H+L LT +++ MAL +L + + ++L +GL +
Sbjct: 84 IGYIFQAHNLL-GFLTARQNVQ-MAL-ELQPNLSYQEARERARAMLEAVGLGDHLDYYPH 140
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
+ LSGG+++R++ A L+ P L+L DEPT LDS S ++ +M++L ++
Sbjct: 141 N--------LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQG 192
Query: 181 KTVLCTIHQPSSELIDMFDKIILLADSR 208
T+L H ++D+ D+I+ + D +
Sbjct: 193 CTILIVTHDN--RILDVADRIVHMEDGK 218
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 81.8 bits (203), Expect = 2e-18
Identities = 53/188 (28%), Positives = 76/188 (40%), Gaps = 29/188 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMYQ 67
G +V ++G +GAGK+TL ++ G + G+ + G R +Q
Sbjct: 30 GEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLPPHRIARLGIARTFQ 86
Query: 68 HDLFSPSLTVYE--------HLYFMALLKLDRRVKAYQRI---ALINSLLIELGLMNSQH 116
P LTV E L LL R K + A LL +GL
Sbjct: 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAR--ELLEFVGLGELAD 144
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
G+ LS G+++RL A L T P LLL DEP GL+ +L ++REL
Sbjct: 145 RPAGN--------LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 177 SQRKKTVL 184
+ T+L
Sbjct: 197 DRGGVTIL 204
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 81.4 bits (202), Expect = 3e-18
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMY-- 66
G +VA++G +GAGK+TLL + + G I +G+ + G R+ G Y
Sbjct: 28 RGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHERARLGIAYVP 84
Query: 67 -QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+F P LTV E+L + + + + + L L ++ R G+
Sbjct: 85 EGRRIF-PRLTVEENL-LLGAYARRDKEAQERDLEEVYELFPRLKER--RNQRAGT---- 136
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGGE++ L+ A L++ P LLL DEP+ GL ++ ++EL + T+L
Sbjct: 137 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTIL 191
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 81.3 bits (202), Expect = 3e-18
Identities = 55/193 (28%), Positives = 80/193 (41%), Gaps = 42/193 (21%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----------FRSAC 62
G + ++G +GAGK+TL +S L G + +G+ + G R+
Sbjct: 26 GEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRT-- 80
Query: 63 GFMYQHD-LFSPSLTVYE----------HLYFMALLKLDRRVKAYQRIALINSLLIELGL 111
+Q LF P LTV E + +A +R LL +GL
Sbjct: 81 ---FQIPRLF-PELTVLENVMVAAQARTGSGLLLARARREEREARERAE---ELLERVGL 133
Query: 112 MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM 171
+ G LS G+++RL A L TDP LLL DEP GL+ +L +
Sbjct: 134 ADLADRPAGE--------LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL 185
Query: 172 MRELTSQRKKTVL 184
+REL +R TVL
Sbjct: 186 IREL-RERGITVL 197
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 81.4 bits (202), Expect = 3e-18
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 42/221 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEGK-----FRSACGFM 65
G +V I+G SG+GKSTLL L+ L PD G I V+G+ V K R G +
Sbjct: 28 GEVVVIIGPSGSGKSTLLRCLN-GLEEPDS----GSITVDGEDVGDKKDILKLRRKVGMV 82
Query: 66 YQH-DLFSPSLTVYEHLYF--MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
+Q +LF P LTV E++ + + KL + +A ++ AL LL ++GL +
Sbjct: 83 FQQFNLF-PHLTVLENVTLAPVKVKKLSKA-EAREK-AL--ELLEKVGLADKADAYPAQ- 136
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGG+++R++ A L DP ++L DEPT+ LD +++ +M++L ++ T
Sbjct: 137 -------LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL-AEEGMT 188
Query: 183 VLCTIHQPSSELIDM-F-----DKIILLADSRTAFIGSKDA 217
++ H +M F D++I + + G +
Sbjct: 189 MIIVTH-------EMGFAREVADRVIFMDQGKIIEEGPPEE 222
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 81.1 bits (200), Expect = 3e-18
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 23/199 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G +AI G SG GKSTLL ++ + G + G+ V +R + Q
Sbjct: 29 GEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQT 85
Query: 69 -DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
LF TV ++L F ++ R R A ++ LL L I + +IT+
Sbjct: 86 PALFGD--TVEDNLIFPWQIRNRR----PDRAAALD-LLARFAL----PDSILTKNITE- 133
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGGE++R++ L P +LL DE T+ LD + + M+ ++ VL
Sbjct: 134 --LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWIT 191
Query: 188 HQPSSELIDMFDKIILLAD 206
H + I DK+I L
Sbjct: 192 HDK-DQAIRHADKVITLQP 209
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 81.3 bits (201), Expect = 3e-18
Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 27/198 (13%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVEG----- 56
L G L G VAI+G SG+GKSTLLA L+ P G++R+ G+P+
Sbjct: 26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS----GEVRLLGQPLHKLDEDA 81
Query: 57 --KFRSA-CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN 113
R+ GF++Q P+LT E++ L+ + + +LL +GL
Sbjct: 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK---ALLEAVGL-- 136
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
R+ LSGGE++R++ A P +L DEPT LD + K+ ++
Sbjct: 137 --GKRLTHYPAQ----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLF 190
Query: 174 ELTSQRKKTVLCTIHQPS 191
L +R T++ H P
Sbjct: 191 ALNRERGTTLVLVTHDPQ 208
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 80.5 bits (199), Expect = 4e-18
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQH 68
G + ++G +GAGK+T + L+ L G V G V + R G ++Q
Sbjct: 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQD 81
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
LT +E+LY A L + +RI LL +GL+ + + +
Sbjct: 82 LSVDDELTGWENLYIHARLYGVPGAERRERID---ELLDFVGLLEAADRLVKT------- 131
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
SGG R+RL A L+ P +L DEPT GLD + + + + +L + T+L T H
Sbjct: 132 -YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 80.6 bits (200), Expect = 5e-18
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 22/154 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMYQ 67
G +VA++G +GAGK+TLL + LP G IR +G+ + G R+ G++ +
Sbjct: 26 GEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERARAGIGYVPE 82
Query: 68 -HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
+F P LTV E+L + R + R+ + L L + G+
Sbjct: 83 GRRIF-PELTVEENL-LLGAYARRRAKRK-ARLERVYELFPRLKER--RKQLAGT----- 132
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160
LSGGE++ L+ A L++ P LLL DEP+ GL
Sbjct: 133 ---LSGGEQQMLAIARALMSRPKLLLLDEPSEGL 163
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 79.9 bits (197), Expect = 6e-18
Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 21/205 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK--FRSACGFMYQ-HD 69
G +VAIMG SGAGKSTLL ++ + G I+VN + G ++ ++Q ++
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80
Query: 70 LFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
LF LTV +++ L L ++ A Q+ + ++G+ +
Sbjct: 81 LF-AHLTVRQNI---GLGLHPGLKLNAEQQ-EKVVDAAQQVGIADYLDRLPEQ------- 128
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+R+R++ A L+ +LL DEP + LD +++ ++++L S+R++T+L H
Sbjct: 129 -LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187
Query: 189 QPSSELIDMFDKIILLADSRTAFIG 213
S+ + +I +++ + +
Sbjct: 188 HL-SDARAIASQIAVVSQGKIKVVS 211
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 80.0 bits (198), Expect = 6e-18
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 25/204 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-------GKFRSACGFM 65
G + + G SGAGK+TLL L L G +R+ G+ V R G +
Sbjct: 28 GEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVV 84
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+Q P TVYE++ L ++ + QR + + L ++GL +
Sbjct: 85 FQDFRLLPDRTVYENVAL-PLEVRGKKEREIQR--RVGAALRQVGLEHKADAFPEQ---- 137
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGGE++R++ A ++ P LLL DEPT LD + +++ +++ L ++R TV+
Sbjct: 138 ----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIV 192
Query: 186 TIHQPSSELIDMFDK-IILLADSR 208
H L+D +I+L D R
Sbjct: 193 ATHDL--SLVDRVAHRVIILDDGR 214
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 81.5 bits (202), Expect = 7e-18
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 22/187 (11%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPV-------EGKFR-SACGFM 65
+ I+G SG+GKS L A+ LP I+ G+I +GK + K R +
Sbjct: 34 LGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMI 93
Query: 66 YQHDLFS--PSLTVYEHL--YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
+Q + S P +T+ + + K + +A +R LL +G+ + + R
Sbjct: 94 FQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAI---ELLELVGIPDPE--RRLK 148
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
S + LSGG R+R+ A L +P LL+ DEPTT LD ++++ +++EL ++
Sbjct: 149 SYPHE---LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGT 205
Query: 182 TVLCTIH 188
++ H
Sbjct: 206 ALILITH 212
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 76.6 bits (189), Expect = 1e-17
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 27 STLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHL 81
STLL ++ L G I ++G+ G R G ++Q P LTV E+L
Sbjct: 1 STLLKLITGLLQPTS---GTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA 141
+F ++ + A L +GL + + LSGG+++R++ A
Sbjct: 58 FF--------GLRDKEADARAEEALERVGLPDFLDREPVGT-------LSGGQKQRVAIA 102
Query: 142 TELLTDPALLLCDEPTT 158
LL P LLL DEPT
Sbjct: 103 RALLKKPKLLLLDEPTA 119
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 81.4 bits (201), Expect = 1e-17
Identities = 62/185 (33%), Positives = 87/185 (47%), Gaps = 28/185 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA---CGFMYQH 68
SG ++G +GAGKST+ + D G I V G PV + R A G + Q
Sbjct: 66 SGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQF 122
Query: 69 DLFSPSLTVYEHL-----YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
D TV E+L YF + + A+I SLL + R+ S +
Sbjct: 123 DNLDLEFTVRENLLVFGRYF--------GMSTREIEAVIPSLL--------EFARLESKA 166
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGG ++RL+ A L+ DP LL+ DEPTTGLD + + +R L + R KT+
Sbjct: 167 DARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTI 225
Query: 184 LCTIH 188
L T H
Sbjct: 226 LLTTH 230
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 79.7 bits (197), Expect = 1e-17
Identities = 54/210 (25%), Positives = 100/210 (47%), Gaps = 25/210 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-----PVEGKFRSACGFMY 66
G I+G +G+GKS LL ++ + D G I +NGK P E + ++
Sbjct: 24 RGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPE---KRDISYVP 77
Query: 67 Q-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q + LF P +TVY+++ + + + + +++ I +L L+N +
Sbjct: 78 QNYALF-PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET------- 129
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGGE++R++ A L+ +P +LL DEP + LD + KL ++++ + TVL
Sbjct: 130 ----LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLH 185
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSK 215
H E + DK+ ++ + + +G
Sbjct: 186 VTHD-FEEAWALADKVAIMLNGKLIQVGKP 214
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 79.2 bits (196), Expect = 1e-17
Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 28/203 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV--EGKFRSACGFMYQHD 69
G + +G +GAGK+T + + + D G+I +GK + G + +
Sbjct: 25 KGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAP 81
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
F P+LT E+L +A L R+ I+ +L +GL +S ++ S+
Sbjct: 82 GFYPNLTARENLRLLARLLGIRK-------KRIDEVLDVVGLKDSAKKKVKGFSL----- 129
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT---SQRKKTVLCT 186
G ++RL A LL +P LL+ DEPT GLD I+ +REL + TVL +
Sbjct: 130 ---GMKQRLGIALALLGNPDLLILDEPTNGLDPDG----IKELRELILSLRDQGITVLIS 182
Query: 187 IHQPSSELIDMFDKIILLADSRT 209
H SE+ + D+I ++ +
Sbjct: 183 SHL-LSEIQKVADRIGIINKGKL 204
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 82.0 bits (203), Expect = 1e-17
Identities = 64/207 (30%), Positives = 95/207 (45%), Gaps = 22/207 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQH 68
G VAI+G SG+GKSTLL L+ G I +NG + E R + Q
Sbjct: 364 GEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQR 420
Query: 69 -DLFSPSLTVYEHLYFMALLKLDRRV-KAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
LFS +L ++L D + A Q++ L L + +T +G
Sbjct: 421 VHLFSGTLR--DNLRLANPDASDEELWAALQQVGLEKLLE---SAPDGLNTWLGEGGRR- 474
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGGER+RL+ A LL D L L DEPT GLD + +++ ++ E KT+L
Sbjct: 475 ---LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMV 529
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIG 213
H+ ++ D+II+L + + G
Sbjct: 530 THRLRG--LERMDRIIVLDNGKIIEEG 554
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 78.8 bits (195), Expect = 2e-17
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 25/187 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPVEGK------FRSACG 63
G + A++G SG GKSTLL L RL D +G++ ++GK + R G
Sbjct: 26 GEITALIGPSGCGKSTLLRLL-NRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVG 84
Query: 64 FMYQH-DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++Q + F ++Y+++ A L+L + + L + L + R+ +
Sbjct: 85 MVFQKPNPFP--GSIYDNV---AYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHA 139
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG+++RL A L +P +LL DEPT+ LD S +K+ ++ EL +++
Sbjct: 140 LG------LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAEL--KKEY 191
Query: 182 TVLCTIH 188
T++ H
Sbjct: 192 TIVIVTH 198
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 80.4 bits (199), Expect = 2e-17
Identities = 59/208 (28%), Positives = 104/208 (50%), Gaps = 24/208 (11%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGK--FRSACGFMYQ 67
G V ++G SG GK+TLL A Q P G+I ++G+ + + G ++Q
Sbjct: 31 GEFVTLLGPSGCGKTTLLRMIAGFEQ--PSS----GEILLDGEDITDVPPEKRPIGMVFQ 84
Query: 68 -HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
+ LF P +TV E++ F LK+ +++K + A + L +GL Q
Sbjct: 85 SYALF-PHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGL--EGF---ADRKPHQ 136
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+++R++ A L+ +P +LL DEP + LD+ ++ + ++EL + T +
Sbjct: 137 ---LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV 193
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGS 214
H E + M D+I ++ D R +G+
Sbjct: 194 TH-DQEEALAMSDRIAVMNDGRIEQVGT 220
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 80.0 bits (197), Expect = 3e-17
Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 28/192 (14%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFR---SA 61
+L+ G ++G +GAGKST+ L + D G I V G+PV + R A
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVA 78
Query: 62 CGFMYQHDLFSPSLTVYEHL-----YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
G + Q D P TV E+L YF + + A+I SLL +
Sbjct: 79 IGVVPQFDNLDPEFTVRENLLVFGRYF--------GMSTREIEAVIPSLL--------EF 122
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
R+ S + + +LSGG ++RL+ A L+ DP LL+ DEPTTGLD + + +R L
Sbjct: 123 ARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182
Query: 177 SQRKKTVLCTIH 188
+ R KT+L T H
Sbjct: 183 A-RGKTILLTTH 193
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 78.7 bits (194), Expect = 3e-17
Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 37/197 (18%)
Query: 14 TLVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGK--------PVEGKFRSACG 63
+ A+MG SG GKSTLL ++ L ++ ++G++R+ G+ P+E R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE--VRREVG 88
Query: 64 FMYQHDLFSPSLTVYEH----LYFMALLK----LDRRVK-AYQRIALINSLLIELGLMNS 114
++Q+ P LT+Y++ + L+K LD RV+ A ++ AL + + L S
Sbjct: 89 MVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS 148
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
LSGG+R+RL A L P +LL DEPT +D +K+ ++ E
Sbjct: 149 N--------------LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194
Query: 175 LTSQRKKTVLCTIHQPS 191
L +++ T++ H P+
Sbjct: 195 L--KKEYTIVLVTHSPA 209
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 78.1 bits (193), Expect = 4e-17
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 21/211 (9%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKF--RSACGFMY 66
SG LVA++G SG+GK+TLL A L + PD G I G+ GF++
Sbjct: 27 SGELVALLGPSGSGKTTLLRLIAGLER--PDS----GTILFGGEDATDVPVQERNVGFVF 80
Query: 67 QHDLFSPSLTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
QH +TV++++ F + + R + A ++ LL L+ Q +
Sbjct: 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELL---KLV--QLDWLADRYPA 135
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
Q LSGG+R+R++ A L +P +LL DEP LD+ +L R +R L + T +
Sbjct: 136 Q---LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVF 192
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
H E +++ D+++++ R +G+ D
Sbjct: 193 VTHD-QEEALEVADRVVVMNKGRIEQVGTPD 222
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 80.5 bits (199), Expect = 4e-17
Identities = 62/191 (32%), Positives = 84/191 (43%), Gaps = 34/191 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQ- 67
G VAI+G SG+GKSTLLA L+ L G++ ++G PV + + R Q
Sbjct: 361 GERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDEVRRRVSVCAQD 417
Query: 68 -HDLFSPSLTVYEHLYFMA-------LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
H LF TV E+L L RV + L + T +
Sbjct: 418 AH-LFDT--TVRENLRLARPDATDEELWAALERVGLADWLR---------ALPDGLDTVL 465
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
G LSGGER+RL+ A LL D +LL DEPT LD+ +A +L+ + S R
Sbjct: 466 GEGGAR----LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGR 521
Query: 180 KKTVLCTIHQP 190
TV+ H
Sbjct: 522 --TVVLITHHL 530
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 77.4 bits (191), Expect = 5e-17
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 28/193 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR-LPDDCIIDGDIRVNGKPVEG-------KFRSACGF 64
G V ++G SGAGKSTLL + + LP G IRVNG+ V R G
Sbjct: 27 GEFVFLVGPSGAGKSTLLKLIYKEELPTS----GTIRVNGQDVSDLRGRAIPYLRRKIGV 82
Query: 65 MYQHDLFSPSLTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++Q P VYE++ F + + + R +R+ + L +GL +
Sbjct: 83 VFQDFRLLPDRNVYENVAFALEVTGVPPRE-IRKRVP---AALELVGLSHKHRALPAE-- 136
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGE++R++ A ++ P +L+ DEPT LD + +++ +++++ ++ TV
Sbjct: 137 ------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI-NKAGTTV 189
Query: 184 LCTIHQPSSELID 196
+ H + EL+D
Sbjct: 190 VVATH--AKELVD 200
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 78.3 bits (194), Expect = 6e-17
Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 43/227 (18%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGF 64
G +VAI+G +GAGKSTLL ALS L D G++R+NG+P+ + R
Sbjct: 27 PGEVVAILGPNGAGKSTLLRALSGELSPDS---GEVRLNGRPLADWSPAELARRR---AV 80
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ QH S TV E + M L+ + L ++ L +
Sbjct: 81 LPQHSSLSFPFTVEE-VVAMGRAPHGLSRAEDDA--LVAAALAQVDL-----AHLAGRDY 132
Query: 125 TQKVVLSGGERKRLSFA------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
Q LSGGE++R+ A E P LL DEPT+ LD ++R+ R+L +
Sbjct: 133 PQ---LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE 189
Query: 179 RKKTVLCTIHQPSSELID-----MF-DKIILLADSRTAFIGSKDAAL 219
R V+ +H D + D+I+LL R G+ L
Sbjct: 190 RGLAVIVVLH-------DLNLAARYADRIVLLHQGRLVADGTPAEVL 229
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 76.9 bits (190), Expect = 8e-17
Identities = 57/202 (28%), Positives = 104/202 (51%), Gaps = 18/202 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G + ++G +GAGK+T + + + D G++ +GKP++ R+ G++ +
Sbjct: 26 GEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNRIGYLPEERGLY 82
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
P + V + L ++A LK ++ +A +RI + L L L + R+ LS
Sbjct: 83 PKMKVIDQLVYLAQLKGLKKEEARRRI---DEWLERLELSEYANKRVEE--------LSK 131
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G ++++ F ++ DP LL+ DEP +GLD + L ++REL KTV+ + HQ
Sbjct: 132 GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQ--M 188
Query: 193 ELI-DMFDKIILLADSRTAFIG 213
EL+ ++ D+++LL R G
Sbjct: 189 ELVEELCDRVLLLNKGRAVLYG 210
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 77.7 bits (192), Expect = 8e-17
Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 22/202 (10%)
Query: 17 AIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP---VEGKF--RSACGF--MYQHD 69
AI+G +GAGK+TLL+ L+ P GD+ + G+ E F R G H+
Sbjct: 61 AIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRIGLVSSELHE 117
Query: 70 LFSPSLTVYEHLY--FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
F TV + + F A + + + + +A LL LG + GS
Sbjct: 118 RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS------ 171
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL-TSQRKKTVLCT 186
LS GE++R+ A L+ DP LL+ DEP GLD + +L+ + EL S +L
Sbjct: 172 --LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFV 229
Query: 187 IHQPSSELIDMFDKIILLADSR 208
H E+ F +LL +
Sbjct: 230 THHA-EEIPPCFTHRLLLKEGE 250
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 77.3 bits (191), Expect = 8e-17
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 18/213 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
+G VA++G SG+GKSTL+ + R D + G I ++G V R G + Q
Sbjct: 27 AGETVALVGPSGSGKSTLVNLIP-RFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQ 83
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
D+F + TV E++ + V+ R A + ++EL T IG +
Sbjct: 84 -DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELP--EGYDTVIGERGVK-- 138
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+R++ A LL DP +L+ DE T+ LD+ S + + L R T
Sbjct: 139 --LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNR--TTFVIA 194
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I+ D+I++L D + G+ + LA
Sbjct: 195 HRLST--IENADRIVVLEDGKIVERGTHEELLA 225
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 76.9 bits (190), Expect = 1e-16
Identities = 63/214 (29%), Positives = 109/214 (50%), Gaps = 22/214 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G VAI+G SG+GKST+L L R D + G I ++G+ + R A G + Q
Sbjct: 27 GKKVAIVGPSGSGKSTILRLLF-RFYD--VSSGSILIDGQDIREVTLDSLRRAIGVVPQ- 82
Query: 69 D--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
D LF+ T+ ++ + D V + A I+ + + + T +G +
Sbjct: 83 DTVLFND--TIGYNIRYGRPDATDEEVIEAAKAAQIHDKI--MRFPDGYDTIVGE----R 134
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
+ LSGGE++R++ A +L +P +LL DE T+ LD+ + ++ +R+++ + +T +
Sbjct: 135 GLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS--KGRTTIVI 192
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I DKII+L D R G+ + LA
Sbjct: 193 AHRLST--IVNADKIIVLKDGRIVERGTHEELLA 224
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 79.1 bits (196), Expect = 1e-16
Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 36/235 (15%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC 62
L G +L+ G + A++G +GAGKSTL+ LS P D G+I ++GKPV F S
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVA--FSSPR 78
Query: 63 -------GFMYQHDLFSPSLTVYEHLYFMALLK-----LDRRVKAYQRIALINSLLIELG 110
++Q P+L+V E+++ +DR+ +R LL LG
Sbjct: 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRK-AMRRRAR---ELLARLG 134
Query: 111 LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170
L T +G LS +R+ + A L D +L+ DEPT L +L
Sbjct: 135 LDIDPDTLVGD--------LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Query: 171 MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQ 225
++R L +Q + + H+ E+ ++ D+I +L D R +G++ A E +
Sbjct: 187 LIRRLKAQGVAIIYIS-HRL-DEVFEIADRITVLRDGRV--VGTRPTAAETSEDE 237
Score = 63.3 bits (155), Expect = 3e-11
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 39/209 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMY--- 66
G ++ I G GAG++ L AL P G+I ++GKPV + G Y
Sbjct: 285 GEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSPRDAIKAGIAYVPE 341
Query: 67 ---QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-----ALINSLLIELGL-MNSQHT 117
L +++ E + L L R + AL + L + S
Sbjct: 342 DRKSEGLV-LDMSIAE---NITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ 397
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
IG+ LSGG ++++ A L TDP +L+ DEPT G+D + +++ R++REL +
Sbjct: 398 PIGT--------LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA 449
Query: 178 QRKKTVLCTIHQPSSELIDMFDKIILLAD 206
+ K ++ I SSEL +++ L+D
Sbjct: 450 EGKAILM--I---SSEL----PELLGLSD 469
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 76.6 bits (189), Expect = 1e-16
Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 23/213 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVEGK--FRSACGFMYQ-H 68
G +VAI+G SGAGKSTLL ++ P G+I +NG ++Q +
Sbjct: 25 GEIVAILGPSGAGKSTLLNLIAGFETPAS----GEILINGVDHTASPPAERPVSMLFQEN 80
Query: 69 DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+LF+ LTV ++ + L L ++ A QR + + ++GL R+
Sbjct: 81 NLFA-HLTVAQN---IGLGLSPGLKLNAEQREK-VEAAAAQVGL-AGFLKRLPGE----- 129
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+R++ A L+ + +LL DEP + LD ++++ ++ +L +RK T+L
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT 187
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H P + + D+++ L + R A GS L+
Sbjct: 188 HHP-EDAARIADRVVFLDNGRIAAQGSTQELLS 219
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 76.1 bits (188), Expect = 2e-16
Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 26/201 (12%)
Query: 16 VAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNG------KPVEGKFRSACGFMYQH 68
VAI+G G+GKSTLL L+ P G + ++G P + R G++ Q
Sbjct: 33 VAIIGRVGSGKSTLLKLLAGLYKPTS----GSVLLDGTDIRQLDPAD--LRRNIGYVPQD 86
Query: 69 -DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
LF +L +++ A L D R+ +A + + N +IG +
Sbjct: 87 VTLFYGTL--RDNITLGAPLADDERILRAAELAGVTDFV--NKHPNGLDLQIGE----RG 138
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+ ++ A LL DP +LL DEPT+ +D S +L +R+L KT++
Sbjct: 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD--KTLIIIT 196
Query: 188 HQPSSELIDMFDKIILLADSR 208
H+PS L+D+ D+II++ R
Sbjct: 197 HRPS--LLDLVDRIIVMDSGR 215
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 77.3 bits (191), Expect = 3e-16
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 27/189 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG-------KFRSAC 62
G + I+G SGAGKSTLL ++ L P G + V+G+ + + R
Sbjct: 31 KGEIFGIIGYSGAGKSTLLRLIN-LLERPTS----GSVFVDGQDLTALSEAELRQLRQKI 85
Query: 63 GFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
G ++QH +L S S TV+E++ F L+L KA + + LL +GL +
Sbjct: 86 GMIFQHFNLLS-SRTVFENVAFP--LELAGVPKA-EIKQRVAELLELVGLSDKADRYPAQ 141
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG+++R++ A L +P +LLCDE T+ LD + ++ +++++ +
Sbjct: 142 --------LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGL 193
Query: 182 TVLCTIHQP 190
T++ H+
Sbjct: 194 TIVLITHEM 202
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 75.7 bits (187), Expect = 3e-16
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 31/215 (14%)
Query: 12 SGTLVAIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNG-----KPVEGKFRSACG 63
G +V ++G +GAGK+T + L + PD G I ++G P+ + R G
Sbjct: 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK--PDS----GKILLDGQDITKLPMHKRARLGIG 78
Query: 64 FMYQ-HDLFSPSLTVYEHLY-FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++ Q +F LTV E++ + + L ++ +R + LL E + + + ++ S
Sbjct: 79 YLPQEASIFR-KLTVEENILAVLEIRGLSKK----EREEKLEELLEEFHITHLRKSK-AS 132
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
S LSGGER+R+ A L T+P LL DEP G+D + + ++++ L R
Sbjct: 133 S-------LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL-KDRGI 184
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
VL T H E + + D+ ++ + + G+ +
Sbjct: 185 GVLITDHN-VRETLSITDRAYIIYEGKVLAEGTPE 218
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 77.1 bits (190), Expect = 3e-16
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 27/191 (14%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSA 61
E++ A G +V +G +GAGKST + ++ LP D G ++V G+ V + +
Sbjct: 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRN 76
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIG 120
G++ +H+ + V E+L F+A + + QR+ +IEL GL QH +IG
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEE----MIELVGLRPEQHKKIG 132
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS---FSASKLIRMMRELTS 177
LS G R+R+ A L+ DP +L+ DEPTTGLD +I+ +
Sbjct: 133 Q--------LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI----- 179
Query: 178 QRKKTVLCTIH 188
+ KT++ + H
Sbjct: 180 GKDKTIILSTH 190
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 75.9 bits (187), Expect = 3e-16
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNG-----KPVE--- 55
+++ A G + ++G +GAGK+TLL ++ L PD G + ++G P
Sbjct: 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS----GKVTIDGVDTVRDPSFVRR 75
Query: 56 --GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN 113
G G + LT E+L + A L R + RIA L L L+
Sbjct: 76 KIGVLFGERGLYAR-------LTARENLKYFARLNGLSRKEIKARIA---ELSKRLQLLE 125
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
R+G S G +++++ A L+ DP++L+ DEPT+GLD + K ++
Sbjct: 126 YLDRRVGE--------FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177
Query: 174 ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
+L ++ + + + E+ + D++I+L GS +A A
Sbjct: 178 QLKNEGRAVIFSS--HIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 75.9 bits (187), Expect = 4e-16
Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 18/195 (9%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
SG L+ ++G SG GK+TLL ++ +P G I ++GKPVEG + G ++Q++
Sbjct: 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP-GAERGVVFQNEGL 81
Query: 72 SPSLTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P V +++ F + L +++ QR+ + + +L ++GL ++ I L
Sbjct: 82 LPWRNVQDNVAFGLQLAGVEKM----QRLEIAHQMLKKVGLEGAEKRYIWQ--------L 129
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGG+R+R+ A L +P LLL DEP LD+F+ ++ ++ +L + K VL H
Sbjct: 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD- 188
Query: 191 SSELIDMFDKIILLA 205
E + M +++LL+
Sbjct: 189 IEEAVFMATELVLLS 203
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 74.9 bits (184), Expect = 4e-16
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 1 MTELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KF 58
+ + T A G +V +MG SG GKSTLL+ + L G++ +N + ++
Sbjct: 18 LANVNFTIA--KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA 75
Query: 59 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
+ G ++Q L P L+V ++L L L +K R N+ L GL + H
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNL----LFALPATLKGNARRNAANAALERSGLDGAFHQ- 130
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGG+R R++ LL P LL DEP + LD
Sbjct: 131 -------DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 75.2 bits (185), Expect = 5e-16
Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 24/186 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC--------- 62
G ++AI+G+SG+GKSTLL L D GD+ NG+P+ K SA
Sbjct: 34 EGEMMAIVGSSGSGKSTLLHLLGGL---DTPTSGDVIFNGQPMS-KLSSAAKAELRNQKL 89
Query: 63 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
GF+YQ P T E++ M LL ++ AL +L +GL + + R S
Sbjct: 90 GFIYQFHHLLPDFTALENVA-MPLLIGKKKPAEINSRAL--EMLAAVGLEHRANHR--PS 144
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGGER+R++ A L+ +P L+L DEPT LD+ +A + +++ EL +
Sbjct: 145 E------LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTA 198
Query: 183 VLCTIH 188
L H
Sbjct: 199 FLVVTH 204
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 74.5 bits (183), Expect = 7e-16
Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 35/212 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNG----------KPVEGKFRSA 61
G + AI+G SG+GKSTLL ++ P G + +NG +PV F+
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQS----GRVLINGVDVTAAPPADRPVSMLFQ-- 77
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
+++LF LTV +++ L ++ A R A I L +GL + G
Sbjct: 78 -----ENNLF-AHLTVEQNVGLGLSPGL--KLTAEDRQA-IEVALARVGLAGLEKRLPGE 128
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGGER+R++ A L+ D +LL DEP LD ++++ ++ +L ++ K
Sbjct: 129 --------LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM 180
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213
TVL HQP + + +++ L + R A G
Sbjct: 181 TVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 74.1 bits (183), Expect = 1e-15
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G + ++G +GAGKSTLL L+ P D G + V G+ GF
Sbjct: 47 RGERIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVS-SLLGLGGGFN------ 96
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
P LT E++Y L R + ++I I ELG + + + S
Sbjct: 97 -PELTGRENIYLNGRLLGLSRKEIDEKIDEIIE-FSELG--DFIDLPVKT--------YS 144
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
G + RL+FA +P +LL DE D+ K R +REL Q K +L + H PS
Sbjct: 145 SGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVS-HDPS 203
Query: 192 SELIDMFDKIILLADSRTAFIG 213
S + + D+ ++L + F G
Sbjct: 204 S-IKRLCDRALVLEKGKIRFDG 224
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 74.3 bits (182), Expect = 1e-15
Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 27/192 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----------EGKFRSA 61
+ ++ IMG SG+GKSTLL L++ + I D I+V+GK + K R
Sbjct: 35 NNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDIFQIDAIKLRKE 91
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMAL---LKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
G ++Q P L++Y+++ + +K R +K ++ L ++GL + R
Sbjct: 92 VGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKK-----IVEECLRKVGLWKEVYDR 146
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+ S + LSGG+++RL+ A L P +LL DEPT+ +D ++ + +++ EL +
Sbjct: 147 LNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL--K 200
Query: 179 RKKTVLCTIHQP 190
+ ++ H P
Sbjct: 201 NEIAIVIVSHNP 212
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 75.0 bits (185), Expect = 1e-15
Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 43/264 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQ- 67
G + ++G SG+GK+T L +++ + G+I ++G+ + + R G++ Q
Sbjct: 27 GEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQ 83
Query: 68 HDLFSPSLTVYEHLYFM-ALLKLDRRVKAYQRIALINSLLIELGLMNSQH-TRIGSSSIT 125
LF P LTV E++ + LL D+ + +R + LL +GL S++ R
Sbjct: 84 IGLF-PHLTVAENIATVPKLLGWDKE-RIKKRA---DELLDLVGLDPSEYADRYPHE--- 135
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGG+++R+ A L DP +LL DEP LD + +L ++EL + KT++
Sbjct: 136 ----LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVF 191
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAV 245
H E + + D+I ++ + D LA NPA+ ++
Sbjct: 192 VTHD-IDEALKLADRIAVMDAGEIVQYDTPDEILA-------------NPANDFVEDF-- 235
Query: 246 TTNDELSSRRRLKRICDEFSVCDF 269
R R+ SV D
Sbjct: 236 -----FGESERGLRLLSLVSVADA 254
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 74.5 bits (183), Expect = 2e-15
Identities = 63/185 (34%), Positives = 87/185 (47%), Gaps = 30/185 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAAL-SQRLPDDCIIDGDIRVNGKPVEGKFRSA---CGFMYQH 68
G ++G +GAGK+T L L PD G I + G+PV + R A G + Q
Sbjct: 33 GECFGLLGPNGAGKTTTLRMLLGLTHPDA----GSISLCGEPVPSRARHARQRVGVVPQF 88
Query: 69 DLFSPSLTVYEHL-----YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
D P TV E+L YF + A AL+ LL L N ++G
Sbjct: 89 DNLDPDFTVRENLLVFGRYF--------GLSAAAARALVPPLLEFAKLENKADAKVGE-- 138
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGG ++RL+ A L+ DP +L+ DEPTTGLD + + +R L + R KT+
Sbjct: 139 ------LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTI 191
Query: 184 LCTIH 188
L T H
Sbjct: 192 LLTTH 196
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 73.1 bits (180), Expect = 2e-15
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGK-PVEGK--FRSACGFMY- 66
G +V +G +GAGK+T L LS L P G++RV G P + + F G ++
Sbjct: 46 KGEIVGFIGPNGAGKTTTLKILSGLLQPTS----GEVRVAGLVPWKRRKKFLRRIGVVFG 101
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q L V + Y +A + + +R+ ++ LL + + + Q
Sbjct: 102 QKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELL--------DLEELLDTPVRQ 153
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LS G+R R A LL +P +L DEPT GLD + + ++E +R TVL T
Sbjct: 154 ---LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT 210
Query: 187 IH 188
H
Sbjct: 211 SH 212
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 75.3 bits (186), Expect = 3e-15
Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 28/216 (12%)
Query: 16 VAIMGASGAGKSTLLAALS-QRLPDD--CIIDG-DIRVNGKPVEGKFRSACGFMYQ-HDL 70
VAI+G G+GKSTLL L P + ++DG DIR P + R G++ Q L
Sbjct: 494 VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR-QIDPAD--LRRNIGYVPQDPRL 550
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIA----LINSLLIELGLMNSQHTRIGSSSITQ 126
F +L +++ A D + +A + L + IG +
Sbjct: 551 FYGTL--RDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQ------IGE----R 598
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+R+ ++ A LL DP +LL DEPT+ +D+ S + ++ + KT++
Sbjct: 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLV 656
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222
H+ S L+D+ D+II++ + R G KD L L
Sbjct: 657 THRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEAL 690
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 74.2 bits (183), Expect = 4e-15
Identities = 51/202 (25%), Positives = 95/202 (47%), Gaps = 31/202 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQH 68
G V ++G SG GKSTLL ++ G+I ++G+ V + R ++Q+
Sbjct: 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRG-IAMVFQN 83
Query: 69 DLFSPSLTVYEHLYF------MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
P +TVYE++ F + ++D+RVK ++ LGL + + +
Sbjct: 84 YALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKL---------LGLEHLLNRKPLQ- 133
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGG+R+R++ A L+ P + L DEP + LD+ + +++L + T
Sbjct: 134 -------LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTT 186
Query: 183 VLCTIHQPSSELIDMFDKIILL 204
+ H E + + D+I+++
Sbjct: 187 TIYVTHDQ-VEAMTLADRIVVM 207
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 73.3 bits (180), Expect = 4e-15
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 42/219 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE------GKFRSACGFMY 66
G + AI+G +GAGKSTL L+ L G I +GKP++ K R + G ++
Sbjct: 32 GEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPIDYSRKGLMKLRESVGMVF 88
Query: 67 Q---HDLFSPSLTVYEHLYFMAL-LKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
Q + LFS S VY+ + F A+ LKL + V+ AL R G
Sbjct: 89 QDPDNQLFSAS--VYQDVSFGAVNLKLPEDEVRKRVDNAL---------------KRTGI 131
Query: 122 SSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
+ K LS G++KR++ A L+ +P +L+ DEPT GLD S++++++ E+ +
Sbjct: 132 EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKEL 191
Query: 180 KKTVLCTIHQPSSELIDMF----DKIILLADSRTAFIGS 214
T++ H ID+ D + ++ + R G+
Sbjct: 192 GLTIIIATHD-----IDIVPLYCDNVFVMKEGRVILQGN 225
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 72.1 bits (177), Expect = 6e-15
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 26/216 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL--PDD--CIIDG-DIRVNGKPVEGKFRSACGFMYQ 67
G +V I+G SG+GKSTL L QR P++ ++DG D+ + R G + Q
Sbjct: 28 GEVVGIVGRSGSGKSTL-TKLIQRFYVPENGRVLVDGHDLALADP---AWLRRQVGVVLQ 83
Query: 68 HD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT- 125
+ LF+ S + +++ RV ++A + + EL G +I
Sbjct: 84 ENVLFNRS--IRDNIALADPGMSMERVIEAAKLAGAHDFISEL--------PEGYDTIVG 133
Query: 126 -QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ + R TV+
Sbjct: 134 EQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGR--TVI 191
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ + D+II++ R GS D LA
Sbjct: 192 IIAHRLST--VKNADRIIVMEKGRIVEQGSHDELLA 225
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 72.2 bits (178), Expect = 6e-15
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 27/180 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQ 67
G + ++G +G GK+TLL L LP + G IR++G+ + + R+ ++ Q
Sbjct: 26 GEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERARAGIAYVPQ 82
Query: 68 -HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSIT 125
++F P LTV E+L L L + ++I I L L M R G
Sbjct: 83 GREIF-PRLTVEENL----LTGLAALPRRSRKIPDEIYELFPVLKEM--LGRRGG----- 130
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVL 184
LSGG++++L+ A L+T P LLL DEPT G+ S K I R++R L ++ +L
Sbjct: 131 ---DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP-SIIKDIGRVIRRLRAEGGMAIL 186
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 72.4 bits (177), Expect = 7e-15
Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 20/185 (10%)
Query: 14 TLVAIMGASGAGKSTLLAAL--------SQRLPDDCIIDG-DIRVNG-KPVEGKFRSACG 63
++ AI+G SG GKST+L ++ S R+ ++D DI G PV R G
Sbjct: 31 SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV--SIRRRVG 88
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++Q P++++Y+++ +A KL+ RV + ++ S L + L + R+ S++
Sbjct: 89 MVFQKPNPFPAMSIYDNV--IAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNA 146
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGG+++RL A + P ++L DEP + LD S K+ ++ EL K T+
Sbjct: 147 ME----LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK--EKYTI 200
Query: 184 LCTIH 188
+ H
Sbjct: 201 IIVTH 205
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 73.8 bits (182), Expect = 8e-15
Identities = 65/216 (30%), Positives = 88/216 (40%), Gaps = 36/216 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH-DLF 71
G +AI+G +GAGKSTLL L+ L G ++V G+ V+ G+ QH D
Sbjct: 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLS---GTVKV-GETVK------IGYFDQHRDEL 397
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVVL 130
P TV E L + + L G Q +G VL
Sbjct: 398 DPDKTVLEEL---------SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVG--------VL 440
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGGE+ RL A LL P LLL DEPT LD S + + E + TVL H
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES----LEALEEALLDFEGTVLLVSHDR 496
Query: 191 SSELID-MFDKIILLADSRTAFIGSKDAALAFLESQ 225
+D + +I L+ D F G + L + +
Sbjct: 497 --YFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530
Score = 68.0 bits (167), Expect = 7e-13
Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 40/198 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDC---IIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G + ++G +GAGKSTLL L+ L D +RV G++ Q
Sbjct: 29 GERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRV-------------GYLSQEP 75
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRI--ALINSLLIELGLMNSQHTRIGSSSITQK 127
P TV +++ +L + + L + L + + + ++ +
Sbjct: 76 PLDPEKTVLDYV-IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR 134
Query: 128 VV-----------------LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170
LSGG R+R++ A LL +P LLL DEPT LD S L
Sbjct: 135 AEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLED 194
Query: 171 MMRELTSQRKKTVLCTIH 188
++ TV+ H
Sbjct: 195 YLKR----YPGTVIVVSH 208
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 72.0 bits (176), Expect = 8e-15
Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQH-D 69
+ A++GASG GKST L ++ IDG + + GK V+ + R G ++Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAY-QRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
+F S +YE++ + KL +K + AL+ L ++GL ++ +++
Sbjct: 90 VFVKS--IYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALA--- 142
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
LSGG+++RL A L P LLL DEPT+ LD S+ + +++EL+
Sbjct: 143 -LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 71.5 bits (176), Expect = 8e-15
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 27/205 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVE-------GKFRSACGF 64
G V + G SGAGKSTLL + P G I VNG + R G
Sbjct: 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTR----GKILVNGHDLSRLKGREIPFLRRQIGV 83
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P TVYE++ L + + + +R ++ +L +GL +
Sbjct: 84 VFQDFRLLPDRTVYENVAL-PLRVIGKPPREIRR--RVSEVLDLVGLKHKARA------- 133
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGGE++R++ A ++ PA+LL DEPT LD + +++R+ E+ ++ TVL
Sbjct: 134 -LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI-NRLGTTVL 191
Query: 185 CTIHQPSSELIDMFDK-IILLADSR 208
H EL++ ++ L D R
Sbjct: 192 MATH--DLELVNRMRHRVLALEDGR 214
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 73.9 bits (182), Expect = 9e-15
Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 22/225 (9%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KF 58
L G + S G +AI+G SG+GKSTL + P G +R++G ++ F
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP---TSGSVRLDGADLKQWDRETF 390
Query: 59 RSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
G++ Q +LF TV E++ ++ ++A ++ L+ L L + T
Sbjct: 391 GKHIGYLPQDVELFPG--TVAENIARFGENADPEKIIEAAKLAGVHELI--LRLPDGYDT 446
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
IG T LSGG+R+R++ A L DP L++ DEP + LD L ++ L
Sbjct: 447 VIGPGGAT----LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL-K 501
Query: 178 QRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222
R TV+ H+PS L+ DKI++L D R A G +D LA L
Sbjct: 502 ARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLAKL 544
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 74.3 bits (182), Expect = 1e-14
Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 22/198 (11%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF---RSACGFMYQHDLF 71
+ A +G +GAGK+T L+ L+ LP G + V GK +E R + G QH++
Sbjct: 958 ITAFLGHNGAGKTTTLSILTGLLPP---TSGTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIAL-INSLLIELGLMNSQHTRIGSSSITQKVVL 130
LTV EH+ F A LK ++++ L + ++L + GL + ++ L
Sbjct: 1015 FHHLTVAEHILFYAQLK----GRSWEEAQLEMEAMLEDTGLHHKRNEEAQD--------L 1062
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGG +++LS A + D +++ DEPT+G+D +S + ++ + S R ++ T H
Sbjct: 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGR-TIIMSTHHMD 1121
Query: 191 SSELIDMFDKIILLADSR 208
++L+ D+I +++ R
Sbjct: 1122 EADLLG--DRIAIISQGR 1137
Score = 61.6 bits (149), Expect = 1e-10
Identities = 53/177 (29%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE---GKFRSACGFMYQHD 69
G ++G +GAGK+T L+ D + GD V GK + G+ Q D
Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTG---DTTVTSGDATVAGKSILTNISDVHQNMGYCPQFD 2021
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
LT EHLY A L R V A + + N + LGL G+
Sbjct: 2022 AIDDLLTGREHLYLYARL---RGVPAEEIEKVANWSIQSLGLSLYADRLAGT-------- 2070
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
SGG +++LS A L+ P L+L DEPTTG+D + L + + + + VL +
Sbjct: 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 72.0 bits (176), Expect = 1e-14
Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 36/199 (18%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV--EGKF-------RSAC 62
G +VA++G SG+GKSTLL LS + D I + G+ V EG+ R+
Sbjct: 29 HGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANT 88
Query: 63 GFMYQHDLFSPSLTVYEHLYFMAL------------LKLDRRVKAYQRIALINSLLIELG 110
G+++Q L+V E++ AL +++ +A Q L +G
Sbjct: 89 GYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA-------LTRVG 141
Query: 111 LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170
+++ H R+ + LSGG+++R++ A L+ ++L DEP LD SA ++
Sbjct: 142 MVHFAHQRVST--------LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193
Query: 171 MMRELTSQRKKTVLCTIHQ 189
+R++ TV+ T+HQ
Sbjct: 194 TLRDINQNDGITVVVTLHQ 212
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 72.0 bits (177), Expect = 1e-14
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 45/212 (21%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMY 66
G +VA++G +GAGKSTL + L G++ + G+P++ + R G ++
Sbjct: 28 GEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVF 84
Query: 67 QH---DLFSPSLTVYEHLYFMAL-LKLD-----RRVKAYQRIALINSLLIELGLMNSQHT 117
Q+ LF+P TV E + F L L L +RVK AL
Sbjct: 85 QNPDDQLFAP--TVEEDVAFGPLNLGLSKEEVEKRVKE----AL---------------K 123
Query: 118 RIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+G K LSGG++KR++ A L P +++ DEPT+GLD AS++++++ +L
Sbjct: 124 AVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL 183
Query: 176 TSQRKKTVLCTIHQPSSELIDMF-DKIILLAD 206
++ T++ + H +L+ ++ DK+ +++D
Sbjct: 184 -NKEGITIIISTHD--VDLVPVYADKVYVMSD 212
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 70.0 bits (172), Expect = 1e-14
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 58/205 (28%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQHD 69
G +A++G SG+GKSTLL L+ L G+I ++G PV E S + Q
Sbjct: 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRP 84
Query: 70 -LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
LF +L N+ R
Sbjct: 85 YLFDTTL------------------------------------RNNLGRR---------- 98
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
SGGER+RL+ A LL D ++L DEPT GLD + +L+ ++ E+ + KT++ H
Sbjct: 99 -FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITH 155
Query: 189 QPSSELIDMFDKIILLADSRTAFIG 213
+ I+ DKI+ L + + G
Sbjct: 156 HLTG--IEHMDKILFLENGKIIMQG 178
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 71.6 bits (176), Expect = 2e-14
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD---CIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G V ++G++GAGKSTLL A++ L +IDG + V K V + + ++Q
Sbjct: 32 GDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDG-VDVTKKSVAKR-ANLLARVFQDP 89
Query: 70 L--FSPSLTVYEHLYFMALLKLDRR----VKAYQRIALINSLL--IELGLMNSQHTRIGS 121
L +P LT+ E+L +A + +R +R + L + LGL N RIG
Sbjct: 90 LAGTAPELTIEENL-ALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG- 147
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
+LSGG+R+ LS L P +LL DE T LD +A ++ + ++ + K
Sbjct: 148 -------LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200
Query: 182 TVLCTIH 188
T L H
Sbjct: 201 TTLMVTH 207
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 71.1 bits (175), Expect = 2e-14
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 14/223 (6%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-----PVEGKFRSACGFMY 66
G + AIMG +G+GKSTL + P + +G+I +G+ + + R+ +
Sbjct: 29 EGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTEGEILFDGEDILELSPDERARAGIFLAF 87
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q+ + P +T + L + R + I + LGL R +
Sbjct: 88 QYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER----YVN- 142
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
SGGE+KR LL +P L + DEP +GLD + + + L + + ++ T
Sbjct: 143 -EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIIT 201
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPC 229
+Q + I DK+ +L D R G + A LE +GY
Sbjct: 202 HYQRLLDYIKP-DKVHVLYDGRIVKSGDPELAE-ELEEKGYDW 242
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 72.0 bits (177), Expect = 2e-14
Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 19/178 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQHD 69
G + +G +GAGK+T + L+ L G RV G V K R + G + Q+
Sbjct: 19 GEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYA 75
Query: 70 LFSPSLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
LT E+L M L L + A +R LL L + +G+
Sbjct: 76 SVDEDLTGRENLEMMGRLYGLPKDE-AEERAE---ELLELFELGEAADRPVGT------- 124
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
SGG R+RL A L+ P +L DEPTTGLD + + +R L + +L T
Sbjct: 125 -YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTT 181
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 71.8 bits (176), Expect = 2e-14
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 15/181 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAA---LSQRLPDDCIIDG-DIRVNGKPVEGKFRSACGFMYQH 68
G + ++GASGAGKSTL+ L + I+DG D+ K R G ++QH
Sbjct: 31 GQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQH 90
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
S TV+ ++ L + + +++ LL +GL + + +
Sbjct: 91 FNLLSSRTVFGNVALPLELDNTPKDEIKRKV---TELLALVGLGDKHDSYPSN------- 140
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+++R++ A L ++P +LLCDE T+ LD + ++ +++E+ + T+L H
Sbjct: 141 -LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITH 199
Query: 189 Q 189
+
Sbjct: 200 E 200
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 70.0 bits (172), Expect = 3e-14
Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 21/185 (11%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP---VEGKFRSACGFMYQ 67
+G + I G +GAGK+TLL L+ L D G++ G+P V + A ++
Sbjct: 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESYHQALLYLGH 82
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
LT E+L+F +R A I L ++GL + +G
Sbjct: 83 QPGIKTELTALENLHFW------QRFHGSGNAATIWEALAQVGLAGLEDLPVGQ------ 130
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LS G+++R++ A L+ L + DEP T LD + L +M + VL T
Sbjct: 131 --LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA-AQGGIVLLTT 187
Query: 188 HQPSS 192
HQP
Sbjct: 188 HQPLP 192
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 70.3 bits (173), Expect = 3e-14
Identities = 59/214 (27%), Positives = 111/214 (51%), Gaps = 27/214 (12%)
Query: 12 SGTLVAIMGASGAGKST-------LLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGF 64
SG +V ++G +GAGK+T L+ S ++ ++D D + P+ + R G+
Sbjct: 29 SGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI----LLD-DEDITKLPMHKRARLGIGY 83
Query: 65 MYQ-HDLFSPSLTVYEHLYFMALLKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
+ Q +F LTV +++ MA+L++ ++ +K +R +++LL E + + + ++ S
Sbjct: 84 LPQEASIFR-KLTVEDNI--MAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYS- 139
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGGER+R+ A L +P +L DEP G+D + + R+++ L R
Sbjct: 140 -------LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIG 191
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
VL T H E +D+ D+ +++D + GS +
Sbjct: 192 VLITDHN-VRETLDICDRAYIISDGKVLAEGSPE 224
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 69.8 bits (171), Expect = 3e-14
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 24/206 (11%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVE--GKFRSACGFMYQ 67
G ++++G SG GKSTLL + L+Q P G + + GK + G R ++Q
Sbjct: 11 GEFISLIGHSGCGKSTLLNLISGLAQ--PTS----GGVILEGKQITEPGPDRMV---VFQ 61
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+ P LTV E++ +A+ ++ + +R A++ + +GL + R G
Sbjct: 62 NYSLLPWLTVRENIA-LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ------ 114
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG ++R++ A L P +LL DEP LD+ + L + ++ + + TVL
Sbjct: 115 --LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVT 172
Query: 188 HQPSSELIDMFDKIILLADSRTAFIG 213
H L+ + D++++L + A IG
Sbjct: 173 HDVDEALL-LSDRVVMLTNGPAANIG 197
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 71.3 bits (175), Expect = 4e-14
Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 33/217 (15%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-----------PVEGKFRSACGF 64
AI G SG+GK+TL+ ++ D +G+I +NG+ P E + G+
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPE---KRRIGY 79
Query: 65 MYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++Q P L+V +L Y M +R + +R ++ LG+ + G
Sbjct: 80 VFQEARLFPHLSVRGNLRYGM------KRARPSERRISFERVIELLGIGHLLGRLPGR-- 131
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGE++R++ LL+ P LLL DEP LD +++ + L ++ +
Sbjct: 132 ------LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
L H E++ + D++++L D R A G A
Sbjct: 186 LYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 70.0 bits (172), Expect = 4e-14
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 16 VAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEGK------FRSACGFMYQ 67
A++G SG GKSTLL +L++ L I+G + +G+ + K R G ++Q
Sbjct: 30 TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQ 89
Query: 68 HDLFSP-SLTVYEHLYFMALLK-------LDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
+P +++Y+++ + L LD V+ L + L + R+
Sbjct: 90 K--PNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEE---------SLKKAALWDEVKDRL 138
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
S++ LSGG+++RL A L +P +LL DEPT+ LD + K+ +++EL
Sbjct: 139 HDSALG----LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL 190
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 71.2 bits (175), Expect = 6e-14
Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-------GKFRSACGFM 65
G + I+G SG+GKSTL L P G +R++G + G+ G++
Sbjct: 362 GEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWDREQLGRH---IGYL 415
Query: 66 YQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
Q +LF T+ E++ +V R+A ++ L+ L L TRIG
Sbjct: 416 PQDVELFDG--TIAENIARFGEEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEGGA 471
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
T LSGG+R+R++ A L DP L++ DEP + LDS + L + R TV+
Sbjct: 472 T----LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA-KARGGTVV 526
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+PS + DKI++L D R A G ++ LA
Sbjct: 527 VIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLA 560
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 69.2 bits (169), Expect = 7e-14
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 24/216 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDC----IIDGDIRVNGKPVEGKFRSACGFMYQ 67
SG +V ++G +GAGK+T + +P D I D DI + P+ + R G++ Q
Sbjct: 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISL--LPLHARARRGIGYLPQ 85
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
L+VY++L MA+L++ + A QR N L+ E + +H R S+ Q
Sbjct: 86 EASIFRRLSVYDNL--MAVLQIRDDLSAEQREDRANELMEEF---HIEHLR---DSMGQS 137
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA---SKLIRMMRELTSQRKKTVL 184
LSGGER+R+ A L +P +L DEP G+D S ++I +R+ VL
Sbjct: 138 --LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD----SGLGVL 191
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
T H E + + ++ +++ G+ L
Sbjct: 192 ITDHN-VRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 68.8 bits (169), Expect = 7e-14
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 49/219 (22%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMY 66
G V ++G SG GK+T L A L + G I + G+ V K R ++
Sbjct: 26 GEFVVLLGPSGCGKTTTLRMIAGLEE------PTSGRIYIGGRDVTDLPPKDRDI-AMVF 78
Query: 67 QHDLFSPSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLIELGLMNSQHTR 118
Q+ P +TVY+++ F LKL D RV+ + I LL + +
Sbjct: 79 QNYALYPHMTVYDNIAFG--LKLRKVPKDEIDERVREVAELLQIEHLL-------DRKPK 129
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR----E 174
LSGG+R+R++ ++ +P + L DEP + LD +KL MR
Sbjct: 130 ----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD----AKLRVQMRAELKR 175
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213
L + T + H E + M D+I ++ D + IG
Sbjct: 176 LQQRLGTTTIYVTHD-QVEAMTMADRIAVMNDGQIQQIG 213
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 69.6 bits (170), Expect = 7e-14
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 14 TLVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
T+ A+MG SG+GKSTLL ++ L + + G++ ++G+ + + R ++Q
Sbjct: 30 TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQ 89
Query: 68 HDLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSIT 125
P+L+++E++ AL LKL+R VK+ + + + L + L + R+ + +
Sbjct: 90 IPNPIPNLSIFENV---ALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGK 146
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGG+++RL A L P +LL DEPT LD + +K+ + EL ++ T++
Sbjct: 147 ----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL--KKDMTIVL 200
Query: 186 TIHQP 190
H P
Sbjct: 201 VTHFP 205
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 68.9 bits (169), Expect = 1e-13
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 31/220 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPV----EGKFRSACGFM 65
G + ++G SG+GK+T + ++ RL P G+I ++G+ + + R G++
Sbjct: 26 KGEFLVLIGPSGSGKTTTMKMIN-RLIEPTS----GEIFIDGEDIREQDPVELRRKIGYV 80
Query: 66 YQH-DLFSPSLTVYEHLYFM-ALLKLDR---RVKAYQRIALINSLLIELGLMNSQHTRIG 120
Q LF P +TV E++ + LLK + R +A + +AL+ L + R
Sbjct: 81 IQQIGLF-PHMTVEENIALVPKLLKWPKEKIRERADELLALVG--LDPAEFAD----RYP 133
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG+++R+ A L DP LLL DEP LD + +L + L +
Sbjct: 134 HE-------LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG 186
Query: 181 KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
KT++ H E + D+I ++ + +G+ D L
Sbjct: 187 KTIVFVTHD-IDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 67.9 bits (166), Expect = 1e-13
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 24/182 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQH 68
+G + + G +G+GK+TLL L+ P G + +NG P+ ++
Sbjct: 25 AGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHA 81
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
+L+V E+L F D + L +GL + +
Sbjct: 82 PGIKTTLSVLENLRFWHADHSD---------EQVEEALARVGLNGFEDRPVAQ------- 125
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LS G+++R++ A LL+ L + DEPTT LD ++ M R V+ T H
Sbjct: 126 -LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC-ARGGMVVLTTH 183
Query: 189 QP 190
Q
Sbjct: 184 QD 185
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 68.5 bits (168), Expect = 1e-13
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVEG-KFRS---ACGFMYQ 67
G ++A++G SG+GKS A+ L P G+I ++G+P+ R A
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNP 71
Query: 68 HDLFSPSLTVYEHLY--FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
F+P T+ H +L KL ++ +A LI L +GL + + +
Sbjct: 72 RTAFNPLFTMGNHAIETLRSLGKLSKQARA-----LILEALEAVGLPDPE--EVLKKYPF 124
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
Q LSGG +R+ A LL +P L+ DEPTT LD + +++++++REL +L
Sbjct: 125 Q---LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILL 181
Query: 186 TIH 188
H
Sbjct: 182 ITH 184
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 69.7 bits (171), Expect = 1e-13
Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 27/214 (12%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFM 65
SG +VA++G SG+GK+TLL A L + G IR +G V + R GF+
Sbjct: 27 SGQMVALLGPSGSGKTTLLRIIAGLEHQ------TSGHIRFHGTDVSRLHARDRKV-GFV 79
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR--IALINSLLIELGLMNSQHTRIGSSS 123
+QH +TV++++ F L L RR +R A I + + +L M Q +
Sbjct: 80 FQHYALFRHMTVFDNIAF-GLTVLPRR----ERPNAAAIKAKVTQLLEM-VQLAHLADRY 133
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT- 182
Q LSGG+++R++ A L +P +LL DEP LD+ +L R +R+L + K T
Sbjct: 134 PAQ---LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS 190
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
V T Q E +++ D++++++ G+ D
Sbjct: 191 VFVTHDQ--EEAMEVADRVVVMSQGNIEQAGTPD 222
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 70.5 bits (173), Expect = 1e-13
Identities = 64/213 (30%), Positives = 104/213 (48%), Gaps = 20/213 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL--PD--DCIIDGDIRVNGKPVEGKFRSACGFMYQH 68
G + I+G SG+GKSTL L QRL P ++DG P R G + Q
Sbjct: 483 GEFIGIVGPSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAW--LRRQMGVVLQE 539
Query: 69 D-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+ LFS S + +++ V ++A + + EL +T +G +
Sbjct: 540 NVLFSRS--IRDNIALCNPGAPFEHVIHAAKLAGAHDFISEL--PQGYNTEVGE----KG 591
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+R++ A L+ +P +L+ DE T+ LD S + ++R MRE+ R +TV+
Sbjct: 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIA 649
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ + D+II+L + A G + LA
Sbjct: 650 HRLST--VRACDRIIVLEKGQIAESGRHEELLA 680
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 68.4 bits (167), Expect = 2e-13
Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 30/192 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFR-SACGFMYQHDL 70
G++ A++G +G+GKSTL AL + + G I + G+P + + ++ Q +
Sbjct: 32 GGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKNLVAYVPQSEE 88
Query: 71 FSPSLTV----------YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
S V Y H+ ++ RR K R ++ + L + ++ +H +IG
Sbjct: 89 VDWSFPVLVEDVVMMGRYGHMGWL------RRAKKRDR-QIVTAALARVDMVEFRHRQIG 141
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG++KR+ A + ++L DEP TG+D + +++I ++REL +
Sbjct: 142 E--------LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-G 192
Query: 181 KTVLCTIHQPSS 192
KT+L + H S
Sbjct: 193 KTMLVSTHNLGS 204
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 68.3 bits (167), Expect = 2e-13
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 30/219 (13%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQH- 68
+ +A++G +GAGKSTL + L G + + G+P+ + R G ++Q+
Sbjct: 31 SRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNP 87
Query: 69 --DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+FSP TV + + F + L LD A++ ++S L LGL R+
Sbjct: 88 DDQIFSP--TVEQDIAFGPINLGLDEETVAHR----VSSALHMLGL-EELRDRVPHH--- 137
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGGE+KR++ A + +P +L+ DEPT GLD +LI + +L TV+
Sbjct: 138 ----LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIF 193
Query: 186 TIHQPSSELI-DMFDKIILLADSRTAFIGSKDAALAFLE 223
+ HQ +L+ +M D I ++ R + FL+
Sbjct: 194 STHQ--LDLVPEMADYIYVMDKGR--IVAYGTVEEIFLQ 228
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 67.0 bits (164), Expect = 2e-13
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 22/182 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQH 68
+G + + G +G GK+TLL L+ L D G++R NG + + ++
Sbjct: 25 AGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHL 81
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
P L+ E+L+F A + + L +GL +
Sbjct: 82 PGLKPELSALENLHFWAAIHGGAQRTIED-------ALAAVGLTGFEDLPAAQ------- 127
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LS G+++RL+ A L+ L + DEPTT LD + L ++R R VL T H
Sbjct: 128 -LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL-ARGGIVLLTTH 185
Query: 189 QP 190
Q
Sbjct: 186 QD 187
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 69.1 bits (170), Expect = 3e-13
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 30/186 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA-------CGFM 65
G + A++G +GAGKSTL+ L D G+IRV+GK V +S G +
Sbjct: 30 GEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVR--IKSPRDAIRLGIGMV 84
Query: 66 YQHDLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIA-LINSLLIELGLMNSQHTRIG 120
+QH + P+LTV E++ +DRR +A RI L + + ++
Sbjct: 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRR-QARARIKELSERYGLPVDP----DAKVA 139
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LS GE++R+ L LL+ DEPT L A +L ++R L ++ K
Sbjct: 140 D--------LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGK 191
Query: 181 KTVLCT 186
+ T
Sbjct: 192 TIIFIT 197
Score = 57.9 bits (141), Expect = 2e-09
Identities = 61/216 (28%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 12 SGTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGKF----RSACGFMY 66
+G +V I G +G G+S L+ A+S R P G I +NGK V G+ R G Y
Sbjct: 283 AGEIVGIAGVAGNGQSELVEAISGLRKPAS----GRILLNGKDVLGRLSPRERRRLGLAY 338
Query: 67 ------QHDLFSPSLTVYEHL---YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
H L L++ E+L + I LIE
Sbjct: 339 VPEDRHGHGL-VLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIE-------EF 390
Query: 118 RIGSSSITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
+ + S LSGG +++L A EL P LL+ +PT GLD + + + EL
Sbjct: 391 DVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR 450
Query: 177 SQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 212
K +L S +L D+I+ L+D R A I
Sbjct: 451 DAGKAVLLI-----SEDL----DEILELSD-RIAVI 476
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 69.0 bits (169), Expect = 4e-13
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 31/191 (16%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCI---IDGDIRVNGKPVEGKFRSAC------ 62
+G +VAI+GASG+GKSTL+ L C+ G RV G+ V A
Sbjct: 33 AGEMVAIVGASGSGKSTLMNILG------CLDKPTSGTYRVAGQDVATLDADALAQLRRE 86
Query: 63 --GFMYQHDLFSPSLTVYEHLYFMALLK-LDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
GF++Q LT +++ A+ L+R+ QR+ LL LGL + +
Sbjct: 87 HFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERK----QRLLRAQELLQRLGLEDRVEYQP 142
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
LSGG+++R+S A L+ ++L DEPT LDS S +++ ++ +L R
Sbjct: 143 SQ--------LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL-RDR 193
Query: 180 KKTVLCTIHQP 190
TV+ H P
Sbjct: 194 GHTVIIVTHDP 204
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 68.3 bits (167), Expect = 4e-13
Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 27/217 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPD----DCIIDGDIRVNGKPVE--GKFRSACGFMY 66
G + IMG SG+GKST + L+ RL + IDG+ + PVE R G ++
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLN-RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77
Query: 67 QHDLFSPSLTVYEHL-YFMALLKLD---RRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
Q P +T+ ++ LL R+ KA + + L+ GL +H
Sbjct: 78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV-------GLEEYEHRYPDE- 129
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGG ++R+ A L +P +LL DE + LD + +++L + +KT
Sbjct: 130 -------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT 182
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219
++ H E I + D+I+++ +G+ D L
Sbjct: 183 IVFITHD-LDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 66.7 bits (163), Expect = 4e-13
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 25/196 (12%)
Query: 6 LTGAAL---SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-------E 55
LTG L G +A++G SG+GKSTLLA L+ L D G++ + G+P+
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAG-LDDGS--SGEVSLVGQPLHQMDEEAR 82
Query: 56 GKFRSA-CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS 114
K R+ GF++Q + P+L E++ ALL+ + ++ +LL +LGL
Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK---ALLEQLGL--- 136
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
G LSGGE++R++ A P +L DEPT LD + K+ ++
Sbjct: 137 -----GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191
Query: 175 LTSQRKKTVLCTIHQP 190
L + T++ H
Sbjct: 192 LNREHGTTLILVTHDL 207
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 65.9 bits (161), Expect = 5e-13
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 35/192 (18%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVE------GKFRSA 61
AA G ++A++GA+GAGKSTLL L+ L P G + ++G+P++ + R
Sbjct: 14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQS----GAVLIDGEPLDYSRKGLLERRQR 69
Query: 62 CGFMYQH---DLFSPSLTVYEHLYF--MALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
G ++Q LF+ V + + F + L + V+ R AL
Sbjct: 70 VGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEVERRVREAL--------------- 112
Query: 117 TRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
T +G+S + ++ LSGGE+KR++ A + P +LL DEPT GLD +++ ++R
Sbjct: 113 TAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 175 LTSQRKKTVLCT 186
L ++ V+ T
Sbjct: 173 LRAEGMTVVIST 184
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 68.3 bits (168), Expect = 6e-13
Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 25/215 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQ 67
G VA++G +G GKSTLL L+ P G+I +NG+P+ E R A + Q
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQ----GEILLNGQPIADYSEAALRQAISVVSQ 421
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDRR-VKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
LFS +L ++L A D ++ Q++ L L + GL + +G
Sbjct: 422 RVHLFSATLR--DNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGL----NAWLGEGGRQ 475
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGGE++RL A LL D LLL DEPT GLD+ + +++ ++ E + KTVL
Sbjct: 476 ----LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLM 529
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ + ++ FD+I ++ + + G+ LA
Sbjct: 530 ITHRLT--GLEQFDRICVMDNGQIIEQGTHQELLA 562
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 67.8 bits (166), Expect = 6e-13
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 36/222 (16%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGK-----PVEG 56
L +LS G V ++G SG GK+TLL ++ G I G+ P +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA----GTIYQGGRDITRLPPQ- 74
Query: 57 KFRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
+ G ++Q + LF P+LTV +++ + LK +R + + + LL +GL S+
Sbjct: 75 --KRDYGIVFQSYALF-PNLTVADNIAYG--LK-NRGMGRAEVAERVAELLDLVGLPGSE 128
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
G LSGG+++R++ A L T P LLL DEP + LD+ L +R+L
Sbjct: 129 RKYPGQ--------LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180
Query: 176 TSQRK---KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
QR+ T++ T Q E + M D+I+++ +G+
Sbjct: 181 --QRRLGVTTIMVTHDQ--EEALSMADRIVVMNHGVIEQVGT 218
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 65.3 bits (160), Expect = 6e-13
Identities = 50/205 (24%), Positives = 77/205 (37%), Gaps = 67/205 (32%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQ 67
G +AI+G SG+GKSTL + L G +R++G + + G++ Q
Sbjct: 27 PGESLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADISQWDPNELGDHVGYLPQ 83
Query: 68 HD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
D LFS SI +
Sbjct: 84 DDELFS-------------------------------------------------GSIAE 94
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL---IRMMRELTSQRKKTV 183
+ LSGG+R+RL A L +P +L+ DEP + LD L I ++ T
Sbjct: 95 NI-LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA----AGATR 149
Query: 184 LCTIHQPSSELIDMFDKIILLADSR 208
+ H+P E + D+I++L D R
Sbjct: 150 IVIAHRP--ETLASADRILVLEDGR 172
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 66.1 bits (162), Expect = 7e-13
Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 20/201 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G VAI+G +GAGK+TL+ L + G I ++G + RS G + Q
Sbjct: 29 GETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSLRSMIGVVLQD 85
Query: 69 D-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
LFS T+ E++ D V + A + +++L N T +G +
Sbjct: 86 TFLFSG--TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKL--PNGYDTVLGENGGN-- 139
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LS GER+ L+ A +L DP +L+ DE T+ +D+ + + + +L + +T +
Sbjct: 140 --LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL--MKGRTSIIIA 195
Query: 188 HQPSSELIDMFDKIILLADSR 208
H+ S+ I DKI++L D +
Sbjct: 196 HRLST--IKNADKILVLDDGK 214
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 66.3 bits (162), Expect = 1e-12
Identities = 57/193 (29%), Positives = 102/193 (52%), Gaps = 28/193 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALS-QRLPDDCIID-GDIRVNG-KPVEG------KFRSAC 62
G +VAI+G SG+GK+TLL ++ P+ I GDI ++ + + + R
Sbjct: 28 PGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHV 87
Query: 63 GFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQR---IALINSLLIELGLMNSQHTR 118
GF++Q+ +LF P TV E++ ++ VK + A LL ++GL +
Sbjct: 88 GFVFQNFNLF-PHRTVLENIIEGPVI-----VKGEPKEEATARARELLAKVGLAGKE--- 138
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+S ++ LSGG+++R++ A L P ++L DEPT+ LD +++ +R+L +Q
Sbjct: 139 ---TSYPRR--LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL-AQ 192
Query: 179 RKKTVLCTIHQPS 191
K+T++ H+ S
Sbjct: 193 EKRTMVIVTHEMS 205
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 65.6 bits (160), Expect = 1e-12
Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 11/192 (5%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G L+ ++G +GAGK+TLL A+ +P G ++V G GK G++ Q F+
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGAS-PGKGWRHIGYVPQRHEFA 61
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
+ + + + +R + + + L T + + + LSG
Sbjct: 62 WDFPI--SVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE---LSG 116
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G+R+R+ A L T P++LL DEP TGLD + L + EL + +L T H +
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL-AGAGTAILMTTHD-LA 174
Query: 193 ELIDMFDKIILL 204
+ + D+++LL
Sbjct: 175 QAMATCDRVVLL 186
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 65.6 bits (161), Expect = 1e-12
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 28/218 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
G VA++G+SG GKST+++ L +R D G+I ++G + RS G + Q
Sbjct: 28 PGKTVALVGSSGCGKSTVVS-LLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQ 84
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
LF T+ E++ + D V+ + A I+ ++ L + T +G +Q
Sbjct: 85 EPVLFD--GTIAENIRYGKPDATDEEVEEAAKKANIHDFIM--SLPDGYDTLVGERG-SQ 139
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS----ASKLIRMMRELTSQRKKT 182
LSGG+++R++ A LL +P +LL DE T+ LD+ S L R M+ +T
Sbjct: 140 ---LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKG------RT 190
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
+ H+ S+ I D I +L + + G+ D +A
Sbjct: 191 TIVIAHRLST--IRNADLIAVLQNGQVVEQGTHDELMA 226
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 66.2 bits (162), Expect = 1e-12
Identities = 48/204 (23%), Positives = 99/204 (48%), Gaps = 20/204 (9%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G + ++G +GAGK+T + L +G+I NG P+ + ++ G++ +
Sbjct: 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNRIGYLPEERGL 83
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
P +TV + L ++A LK + + +++ + L L ++ + +I LS
Sbjct: 84 YPKMTVEDQLKYLAELKGMPKAEIQKKL---QAWLERLEIVGKKTKKIKE--------LS 132
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
G ++++ F + ++ +P LL+ DEP +GLD + L + EL + T++ + H+
Sbjct: 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL-KEEGATIIFSSHRME 191
Query: 192 --SELIDMFDKIILLADSRTAFIG 213
EL D++++L +T G
Sbjct: 192 HVEELC---DRLLMLKKGQTVLYG 212
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 65.4 bits (160), Expect = 2e-12
Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 39/220 (17%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
G + +I+G +GAGKSTLL+ +S+ L D G+I ++G + + + Q
Sbjct: 26 KGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQ 82
Query: 68 HDLFSPSLTVYEHLYFM-------ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
+ + LTV + + F L K DRR +IN + L L + +
Sbjct: 83 ENHINSRLTVRDLVGFGRFPYSQGRLTKEDRR--------IINEAIEYLHLEDLSDRYLD 134
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG+R+R A L D +L DEP LD + ++++++R L +
Sbjct: 135 E--------LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELG 186
Query: 181 KTVLCTIHQPSSELIDM----FDKIILLADSRTAFIGSKD 216
KT++ +H I+ D I+ L + + GS D
Sbjct: 187 KTIVVVLHD-----INFASCYSDHIVALKNGKVVKQGSPD 221
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 65.5 bits (160), Expect = 2e-12
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 35/202 (17%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNG---------- 51
L G +L G +++I+G+SG+GKST L ++ P G IRVNG
Sbjct: 22 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA----GSIRVNGEEIRLKRDKD 77
Query: 52 ---KPVEGK----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 104
KP + + R+ G ++QH +TV E++ + L V + I
Sbjct: 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEK 135
Query: 105 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
L ++G+ LSGG+++R++ A L +P ++L DEPT+ LD
Sbjct: 136 YLAKVGIAEKADA--------YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPEL 187
Query: 165 ASKLIRMMRELTSQRKKTVLCT 186
+++++M++L + + V+ T
Sbjct: 188 VGEVLKVMQDLAEEGRTMVVVT 209
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 64.1 bits (157), Expect = 3e-12
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-GKFRSACGFMYQHDL 70
+G + + G +G+GK+TLL ++ LP G I+++G ++ AC ++ +
Sbjct: 27 AGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEACHYLGHRNA 83
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P+LTV E+L F A + + + GL H G L
Sbjct: 84 MKPALTVAENLEFWAAFLGGEELDIAAALEAV-------GLAPLAHLPFG--------YL 128
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
S G+++R++ A L+++ + + DEPT LD+ + + ++R
Sbjct: 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRA 172
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 65.0 bits (158), Expect = 3e-12
Identities = 55/218 (25%), Positives = 105/218 (48%), Gaps = 22/218 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG------KFRSACGF 64
+ A++G SG GKST L L++ L I G++ + G+ + + R G
Sbjct: 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGM 90
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSS 123
++Q P ++YE++ + L VK + + + L + + + + S+
Sbjct: 91 VFQQPNPFP-FSIYENVIYGLRLA---GVKDKAVLDEAVETSLKQAAIWDEVKDHLHESA 146
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
++ LSGG+++R+ A L P ++L DEPT+ LD S++++ M+ EL Q +
Sbjct: 147 LS----LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIIL 202
Query: 184 LC-TIHQPS--SELIDMF--DKIILLADSRTAFIGSKD 216
+ ++HQ S S+ F +I AD++ F+ K+
Sbjct: 203 VTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKE 240
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 65.8 bits (161), Expect = 3e-12
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 41/206 (19%)
Query: 17 AIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGK-----------PVEGKFRSACGF 64
A+ G SG+GK++L+ ++ PD+ G I +NG+ P E + G+
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDE----GRIELNGRVLVDAEKGIFLPPE---KRRIGY 80
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL--INSLLIELGLMNSQHTRIGSS 122
++Q P TV +L + R + Q +AL I LL R +
Sbjct: 81 VFQDARLFPHYTVRGNLRYGM--WKSMRAQFDQLVALLGIEHLL----------DRYPGT 128
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGGE++R++ LLT P LLL DEP LD +++ + L +
Sbjct: 129 -------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP 181
Query: 183 VLCTIHQPSSELIDMFDKIILLADSR 208
+L H E++ + D++++L + +
Sbjct: 182 ILYVSHSL-DEVLRLADRVVVLENGK 206
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 64.5 bits (158), Expect = 3e-12
Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 34/180 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEGK------FRSACGF 64
+ A++G SG GKSTLL L++ L ++G++ ++GK + R G
Sbjct: 33 NKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGM 92
Query: 65 MYQHDLFSPS---LTVYEHLYF------MALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
++Q P+ +++Y+++ + + +LD V++ + A L +
Sbjct: 93 VFQK----PNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKA---------ALWDEV 139
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
R+ S++ LSGG+++RL A L P +LL DEPT+ LD S K+ ++ EL
Sbjct: 140 KDRLHKSALG----LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL 195
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 64.5 bits (157), Expect = 3e-12
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 17 AIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQH 68
A++G SG GKSTLL ++ L C I GDI NG+ + R G ++Q
Sbjct: 36 ALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQR 95
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
P ++YE++ + + ++ K I + L L + R+ S+++
Sbjct: 96 PNPFPK-SIYENVAYGPRIHGEKNKKTLDTI--VEKSLKGAALWDEVKDRLHDSALS--- 149
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+++RL A L +P ++L DEP + LD + +K+ ++ +L +++ TV+ H
Sbjct: 150 -LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL--KKEYTVIIVTH 206
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 64.3 bits (157), Expect = 4e-12
Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 31/191 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEGK------FRSACGF 64
+ A++G SG GKST L L++ L I+G++ ++G+ + R G
Sbjct: 29 NQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGM 88
Query: 65 MYQHDLFSPSLTVYEHLYFMALL-------KLDRRVKAYQRIALINSLLIELGLMNSQHT 117
++Q P +++Y+++ + KLD V+ + A L +
Sbjct: 89 VFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGA---------ALWDEVKD 138
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
R+ S++ LSGG+++RL A L +P +LL DEPT+ LD S K+ +++EL
Sbjct: 139 RLKKSALG----LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-- 192
Query: 178 QRKKTVLCTIH 188
++ T++ H
Sbjct: 193 KKDYTIVIVTH 203
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 64.0 bits (156), Expect = 6e-12
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 34/209 (16%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPVEG------KFRSACGFM 65
+ A++G SG+GKSTLL +++ R+ D + I G I NG + R G +
Sbjct: 33 ITALIGPSGSGKSTLLRSIN-RMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMV 91
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSI 124
+Q P +++YE++ + LK +K Q + + L + + R+ S++
Sbjct: 92 FQQPNPFP-MSIYENVVYGLRLK---GIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSAL 147
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+++R+ A L T P ++L DEPT+ LD SA K+ + L + T+L
Sbjct: 148 G----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL--KDDYTML 201
Query: 185 CTIH--QPSSELIDMFDKIILLADSRTAF 211
Q +S + D RT F
Sbjct: 202 LVTRSMQQASRISD-----------RTGF 219
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 65.1 bits (159), Expect = 7e-12
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 25/204 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
G VA++G SG+GKSTL+ + + PD G I ++G + R + Q
Sbjct: 358 GETVALVGRSGSGKSTLVNLIPRFYEPDS----GQILLDGHDLADYTLASLRRQVALVSQ 413
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSI 124
LF+ T+ ++ + + DR A AL + + L T IG +
Sbjct: 414 DVVLFND--TIANNIAYGRTEQADR---AEIERALAAAYAQDFVDKLPLGLDTPIGENG- 467
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
V+LSGG+R+RL+ A LL D +L+ DE T+ LD+ S + + L + +T L
Sbjct: 468 ---VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL--MQGRTTL 522
Query: 185 CTIHQPSSELIDMFDKIILLADSR 208
H+ S+ I+ D+I+++ D R
Sbjct: 523 VIAHRLST--IEKADRIVVMDDGR 544
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 64.7 bits (158), Expect = 7e-12
Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 32/187 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGK-PVEGK---FRSACGFMYQ 67
G +V +GA+GAGKST L L+ L P G +RVNGK P + RS M Q
Sbjct: 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTS----GKVRVNGKDPFRRREEYLRSIGLVMGQ 105
Query: 68 H-----DL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
DL SL V + +Y + + R+ I L +E L
Sbjct: 106 KLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEI-----LDLEGFLKWPVRK---- 156
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LS G+R R A LL P +L DEPT GLD + + + ++E +R+
Sbjct: 157 --------LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA 208
Query: 182 TVLCTIH 188
TVL T H
Sbjct: 209 TVLLTTH 215
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 65.1 bits (159), Expect = 7e-12
Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 20/213 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G VA++G SGAGKSTL L R D G I ++G + + R+ + Q
Sbjct: 366 GETVALVGPSGAGKSTLFQLL-LRFYDPQ--SGRILLDGVDLRQLDPAELRARMALVPQD 422
Query: 69 D-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
LF+ S V E++ + D V+A R A + + L T +G +T
Sbjct: 423 PVLFAAS--VMENIRYGRPDATDEEVEAAARAAHAHEFI--SALPEGYDTYLGERGVT-- 476
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+R++ A +L D +LL DE T+ LD+ S + + + L R T L
Sbjct: 477 --LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGR--TTLIIA 532
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ ++ + D+I+++ R G+ +A
Sbjct: 533 HRLAT--VLKADRIVVMDQGRIVAQGTHAELIA 563
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 63.6 bits (155), Expect = 7e-12
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 23/171 (13%)
Query: 13 GTLVAIMGASGAGKSTLLA---ALSQRLPDDCIIDGDIRVNGKPV-EGKFRSACGFMYQH 68
G +V I+G SG+GKSTLL L + D I+DG ++VN V E R G ++Q
Sbjct: 27 GEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG-LKVNDPKVDERLIRQEAGMVFQQ 85
Query: 69 -DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA---LINSLLIELGLMNSQHTRIGSSSI 124
LF P LT E++ F RV+ + LL ++GL H
Sbjct: 86 FYLF-PHLTALENVMFGP-----LRVRGASKEEAEKQARELLAKVGLAERAHHYPSE--- 136
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGG+++R++ A L P L+L DEPT+ LD +++++M++L
Sbjct: 137 -----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL 182
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 64.4 bits (157), Expect = 8e-12
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 27/204 (13%)
Query: 18 IMGASGAGKSTLLAALS--QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
++G SG GK+TLL L+ ++ I+ V P ++Q P +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH---LRHINMVFQSYALFPHM 57
Query: 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 135
TV E++ F LK+ R+V + + L L+ Q Q LSGG++
Sbjct: 58 TVEENVAFG--LKM-RKVPRAEIKPRVLEAL---RLV--QLEEFADRKPHQ---LSGGQQ 106
Query: 136 KRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMREL-TSQRK---KTVLCTIHQP 190
+R++ A L+ P +LL DEP + LD KL +M EL T Q + V T Q
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALD----KKLRDQMQLELKTIQEQLGITFVFVTHDQ- 161
Query: 191 SSELIDMFDKIILLADSRTAFIGS 214
E + M D+I ++ + A IG+
Sbjct: 162 -EEAMTMSDRIAIMRKGKIAQIGT 184
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 63.5 bits (155), Expect = 8e-12
Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 29/188 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
+G + A++G +G GKSTLL ++ L G + + KP+ + + Q
Sbjct: 27 TGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSRQLARRLALLPQ 83
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT-----RIGSS 122
H L +TV R + AY R + SL L ++ + +
Sbjct: 84 HHLTPEGITV-------------RELVAYGR-SPWLSLWGRLSAEDNARVNQAMEQTRIN 129
Query: 123 SITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
+ + + LSGG+R+R A L D ++L DEPTT LD +L+R+MREL + +
Sbjct: 130 HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL-NTQG 188
Query: 181 KTVLCTIH 188
KTV+ +H
Sbjct: 189 KTVVTVLH 196
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 64.2 bits (156), Expect = 9e-12
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 22/212 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHD 69
+G L+A++G SG GK+TLL A++ + + G I + + + + ++Q+
Sbjct: 30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGL-TGRIAIADRDLTHAPPHKRGLALLFQNY 88
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
P L V +++ F L+ + KA I + + L + Q
Sbjct: 89 ALFPHLKVEDNVAFG--LRAQKMPKA-----DIAERVAD-ALKLVGLGDAAAHLPAQ--- 137
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDS----FSASKLIRMMRELTSQRKKTVLC 185
LSGG ++R++ A + +P +LL DEP + LD+ ++ + EL T+LC
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL---TILC 194
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217
H L + DK ++ D R A G A
Sbjct: 195 VTHDQDDALT-LADKAGIMKDGRLAAHGEPQA 225
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 63.5 bits (155), Expect = 9e-12
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 28/220 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGKFRSAC----GFMY 66
G ++AI+G +GAGKSTLL ALS + PD G++ +NG P+ +
Sbjct: 26 PGEVLAILGPNGAGKSTLLKALSGELSPDS----GEVTLNGVPLNSWPPEELARHRAVLP 81
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q+ + TV E ++++ R R + + L + + +
Sbjct: 82 QNSSLAFPFTVQE------VVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 127 KVVLSGGERKRLSFA------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGGE++R+ A + L DEPT+ LD +R+ R+L +
Sbjct: 136 ---LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREG- 191
Query: 181 KTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGSKDAAL 219
VL +H + L + D+I+LL R GS L
Sbjct: 192 GAVLAVLHDLN--LAAQYADRIVLLHQGRVIASGSPQDVL 229
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 63.5 bits (154), Expect = 9e-12
Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 27/188 (14%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPVEGK------FRSACGF 64
++VA +G SG GKST L L R+ D ++G+IR++G+ + K R G
Sbjct: 30 SVVAFIGPSGCGKSTFLR-LFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGM 88
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE----LGLMNSQHTRIG 120
++Q P +++E++ + RV + A I + E L + ++
Sbjct: 89 VFQRPNPFPK-SIFENVAY------GLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLK 141
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
S+ LSGG+++RL A + P++LL DEP + LD S +K+ ++ EL ++
Sbjct: 142 ESAFA----LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL--KKD 195
Query: 181 KTVLCTIH 188
T++ H
Sbjct: 196 YTIVIVTH 203
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 63.3 bits (154), Expect = 1e-11
Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 30/184 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G + I+G SGAGKSTL+ L RL D +G I ++G ++ R G ++Q
Sbjct: 29 GAIYTIVGPSGAGKSTLIK-LINRLIDP--TEGSILIDGVDIKTIDVIDLRRKIGMVFQQ 85
Query: 69 DLFSPSL---TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
P L TV +++ + +LK ++ V ++++ GL TR
Sbjct: 86 ----PHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIV-------GLNKEYATR------- 127
Query: 126 QKVV-LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
V LSGGE +R+S A L +P +LL DEPT+ LD S + ++ +L ++ TV+
Sbjct: 128 -DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVI 186
Query: 185 CTIH 188
H
Sbjct: 187 WITH 190
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 63.1 bits (153), Expect = 1e-11
Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 33/197 (16%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALS--QRLPDDCII------------DGDIRVNGKPV 54
A +G +++I+G+SG+GKST L ++ ++ + I+ DG ++V K
Sbjct: 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQ 86
Query: 55 EGKFRSACGFMYQHDLFSPSLTVYEHLY-----FMALLKLDRRVKAYQRIALINSLLIEL 109
R+ ++QH +TV E++ + L K + R +A + + + I+
Sbjct: 87 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA---VKYLAKVGID- 142
Query: 110 GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI 169
+ V LSGG+++R+S A L +P +LL DEPT+ LD +++
Sbjct: 143 ----------ERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVL 192
Query: 170 RMMRELTSQRKKTVLCT 186
R+M++L + K V+ T
Sbjct: 193 RIMQQLAEEGKTMVVVT 209
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 62.6 bits (153), Expect = 1e-11
Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 35/188 (18%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KF 58
L+ +G ++ ++G +GAGKSTLLA ++ LP G I+ G+P+E +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 59 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
R ++ Q ++ V+++L L + + + +N + LGL +
Sbjct: 71 R---AYLSQQQTPPFAMPVFQYL----TLHQPDKTRTEAVASALNEVAEALGLDDKLGR- 122
Query: 119 IGSSSITQKVVLSGGE--RKRLSFATELLTDPA------LLLCDEPTTGLDSFSASKLIR 170
S+ Q LSGGE R RL+ A L P LLL DEP LD + L R
Sbjct: 123 ----SVNQ---LSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDR 174
Query: 171 MMRELTSQ 178
++ EL Q
Sbjct: 175 LLSELCQQ 182
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 62.6 bits (152), Expect = 2e-11
Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 35/191 (18%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI---IDGDIRVNGKPV-EGK-----FRSACGFM 65
+ AI+G SG GK+TLL +++ R+ D ++G I G+ + + + +R G +
Sbjct: 31 ITAIIGPSGCGKTTLLRSIN-RMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMV 89
Query: 66 YQHDLFSPSLTVYEHLYFMALL-------KLDRRV-KAYQRIALINSLLIELGLMNSQHT 117
+Q P +++Y+++ F + KLDR V ++ ++ AL + + EL ++
Sbjct: 90 FQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTR-- 146
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
LSGG+++RL A L +P ++L DEPT+ LD + ++ +++ EL+
Sbjct: 147 ------------LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS- 193
Query: 178 QRKKTVLCTIH 188
T++ H
Sbjct: 194 -ENYTIVIVTH 203
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 62.2 bits (151), Expect = 2e-11
Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 15 LVAIMGASGAGKSTLLAALS---QRLPD-----DCIIDGDIRVNGKPVEGKFRSACGFMY 66
+ AI+G SG GKST + L+ Q +P+ + +G + GK + R G ++
Sbjct: 40 VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVF 99
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q P ++++++ + + + K Q I L ++ L + R+ + +++
Sbjct: 100 QKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIV--EKSLKDVALWDEVKDRLHTQALS- 155
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+++RL A L T+P +LL DEPT+ LD S K+ ++ +L + K T++
Sbjct: 156 ---LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL--KEKYTIVIV 210
Query: 187 IH 188
H
Sbjct: 211 TH 212
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 61.9 bits (151), Expect = 3e-11
Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 58/239 (24%)
Query: 18 IMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEGKFRSAC--------GFMYQ 67
IMG SG+GKSTLL ++ RL P G + ++G+ + R ++Q
Sbjct: 55 IMGLSGSGKSTLLRCIN-RLIEPTS----GKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109
Query: 68 HDLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
P TV E++ F + + +R +A + + L+ GL +H
Sbjct: 110 SFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV-------GLEGWEHKYPDE-- 160
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRE---LTSQ 178
LSGG ++R+ A L DP +LL DE + LD LIR M E L ++
Sbjct: 161 ------LSGGMQQRVGLARALAVDPDILLMDEAFSALDP-----LIRREMQDELLRLQAE 209
Query: 179 RKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPAD 237
+KT++ H E + + D+I ++ D R +G+ + L NPA+
Sbjct: 210 LQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEILT-------------NPAN 254
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 62.1 bits (151), Expect = 3e-11
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 41/191 (21%)
Query: 17 AIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGK--------PVEGKFRSACGFMY 66
A++G SG GKST L +++ L D ++G++ GK PV R G ++
Sbjct: 69 AMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV--ALRRRIGMVF 126
Query: 67 QHDLFSPSLTVYEHLYFMALLK-----LDRRV-KAYQRIAL---INSLLIELGLMNSQHT 117
Q P ++Y+++ + ++ +D RV ++ +R AL + L GL
Sbjct: 127 QKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGL------ 179
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
LSGG+++RL A + DP ++L DEP + LD + SK+ ++ EL
Sbjct: 180 -----------DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE 228
Query: 178 QRKKTVLCTIH 188
+ TV+ H
Sbjct: 229 EY--TVVIVTH 237
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 61.8 bits (150), Expect = 4e-11
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 30/212 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA----CGFMYQH 68
G+L ++G +G+GKSTLL L+ L D G + + G + G R A + Q
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQD 83
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRI----ALINSLLIELGLMNSQHTRIGSSSI 124
+ LTV R V A RI + +++ R S +
Sbjct: 84 SDTAVPLTV-------------RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL 130
Query: 125 TQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
+ + LSGGER+R+ A L +P LLL DEPT LD + + + ++REL + T
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATG-VT 189
Query: 183 VLCTIHQPSSELIDMF-DKIILLADSRTAFIG 213
V+ +H + L + D +++L R G
Sbjct: 190 VVAALHDLN--LAASYCDHVVVLDGGRVVAAG 219
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 60.1 bits (147), Expect = 5e-11
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 65/203 (32%)
Query: 13 GTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMY-- 66
G +V I G G G++ L AL R P G+I ++GKPV + G Y
Sbjct: 26 GEIVGIAGLVGNGQTELAEALFGLRPPAS----GEITLDGKPVTRRSPRDAIRAGIAYVP 81
Query: 67 ---QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+ + L+V E++ ++SLL
Sbjct: 82 EDRKREGLVLDLSVAENI-------------------ALSSLL----------------- 105
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
SGG ++++ A L DP +L+ DEPT G+D + +++ R++REL K +
Sbjct: 106 -------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 184 LCTIHQPSSELIDMFDKIILLAD 206
L SSEL D+++ L D
Sbjct: 159 LI-----SSEL----DELLGLCD 172
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 61.1 bits (149), Expect = 5e-11
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 32/232 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG------KPVEGKFRSACG-F 64
G + AIMG +G+GKSTL ++ P + G I G +P E R+ G F
Sbjct: 25 KGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDE---RARAGLF 80
Query: 65 M-YQHDLFSPSLTVYEHLYFMALLKLDRR-------VKAYQRIALINSLLIELGLMNSQH 116
+ +Q+ P ++ E F+ RR + + L+ + L LG+
Sbjct: 81 LAFQYPEEIPGVSNLE---FLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFL 137
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMREL 175
R + SGGE+KR L +P L + DE +GLD A K++ + L
Sbjct: 138 NR------SVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD-IDALKIVAEGINRL 190
Query: 176 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGY 227
+ ++ T +Q I D + +L D R G + A LE +GY
Sbjct: 191 REPDRSFLIITHYQRLLNYIKP-DYVHVLLDGRIVKSGDVELAKE-LEEKGY 240
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 61.4 bits (149), Expect = 7e-11
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 17/174 (9%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPVEGKF------RSA 61
LS + AI+G SG GKST L A++ R+ D C G + +G+ + GKF R
Sbjct: 63 LSKYVTAIIGPSGCGKSTFLRAIN-RMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKK 121
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
G ++Q P ++++++ + L K + I + L + L + R+
Sbjct: 122 IGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEI--VEKSLRKAALWDEVSDRLDK 178
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+++ LSGG+++RL A L +P +LL DEPT+ LD + +K+ +++EL
Sbjct: 179 NALG----LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 61.8 bits (151), Expect = 8e-11
Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 29/200 (14%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQHDLF 71
+A++G SGAGK++LL AL LP G +++NG + +R ++ Q
Sbjct: 379 IALVGPSGAGKTSLLNALLGFLP----YQGSLKINGIELRELDPESWRKHLSWVGQ---- 430
Query: 72 SPSL---TVYEHLYFMALLKLDRRVKAYQRIALINSLL--IELGLMNSQHTRIGSSSITQ 126
+P L T+ +++ D +++ A ++ L + GL T IG +
Sbjct: 431 NPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGL----DTPIGDQAAG- 485
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LS G+ +RL+ A LL LLL DEPT LD+ S +++ + S+R+ T++ T
Sbjct: 486 ---LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTLMVT 541
Query: 187 IHQPSSELIDMFDKIILLAD 206
HQ +L D+I ++ D
Sbjct: 542 -HQ-LEDLAQW-DQIWVMQD 558
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 60.4 bits (146), Expect = 1e-10
Identities = 50/184 (27%), Positives = 93/184 (50%), Gaps = 16/184 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG------KFRSACGF 64
GT+ A++G SG GK+T L A+++ L + G I ++G+ + G R G
Sbjct: 30 GTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGM 89
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P+++V++++ +A LKL + + L L + R+ + +
Sbjct: 90 VFQKPNPFPTMSVFDNV--VAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPAT 147
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+++RL A L +P +LL DEPT+ LD S +++ +M +L ++ T++
Sbjct: 148 G----LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL--KKVTTII 201
Query: 185 CTIH 188
H
Sbjct: 202 IVTH 205
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 59.9 bits (146), Expect = 1e-10
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 35/213 (16%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQ 67
G ++G SG GK+TLL A P G+I ++GK + + ++Q
Sbjct: 26 GEFFTLLGPSGCGKTTLLRLIAGFET--PTS----GEILLDGKDITNLPPHKRPVNTVFQ 79
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
+ LF P LTV+E++ F L+L + KA + + L + L + +
Sbjct: 80 NYALF-PHLTVFENIAFG--LRLKKLPKAEIK-ERVAEALDLVQLEGYANRKPSQ----- 130
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR-ELTSQRKKT--- 182
LSGG+++R++ A L+ +P +LL DEP LD KL + M+ EL +K+
Sbjct: 131 ---LSGGQQQRVAIARALVNEPKVLLLDEPLGALD----LKLRKDMQLELKRLQKELGIT 183
Query: 183 -VLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
V T Q E + M D+I ++ + IG+
Sbjct: 184 FVFVTHDQ--EEALTMSDRIAVMNKGKIQQIGT 214
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 59.4 bits (145), Expect = 1e-10
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 37/190 (19%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 68
+G LV I G +GAGK++LL A L++ PD G++ G+P+ Y
Sbjct: 26 AGELVQIEGPNGAGKTSLLRILAGLAR--PD----AGEVLWQGEPI-----RRQRDEYHQ 74
Query: 69 DLF--------SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
DL LT E+L F R+ + L ++GL + +
Sbjct: 75 DLLYLGHQPGIKTELTALENLRFYQ------RLHGPGDDEALWEALAQVGLAGFEDVPVR 128
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LS G+++R++ A LT L + DEP T +D ++L ++ + ++
Sbjct: 129 --------QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA-EQG 179
Query: 181 KTVLCTIHQP 190
V+ T HQ
Sbjct: 180 GMVILTTHQD 189
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 60.4 bits (146), Expect = 1e-10
Identities = 45/186 (24%), Positives = 91/186 (48%), Gaps = 24/186 (12%)
Query: 14 TLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEGK------FRSACGFM 65
++ A++G SG GKST + L++ L +C I+G + + G+ + R G +
Sbjct: 39 SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMV 98
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL---INSLLIELGLMNSQHTRIGSS 122
+Q P +++Y+++ + R+ + L + + L L + R+ S
Sbjct: 99 FQKPNPFP-MSIYDNVAY------GPRIHGANKKDLDGVVENALRSAALWDETSDRLKSP 151
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
+++ LSGG+++RL A L P ++L DEPT+ LD S +++ ++ L ++ T
Sbjct: 152 ALS----LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL--KKDYT 205
Query: 183 VLCTIH 188
++ H
Sbjct: 206 IVIVTH 211
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 61.5 bits (150), Expect = 1e-10
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 37/210 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGKFRSA-------CGF 64
G + A+MG +GAGKSTLL LS PD G I ++G+ + +F S
Sbjct: 30 GQVHALMGENGAGKSTLLKILSGNYQPD----AGSILIDGQEM--RFASTTAALAAGVAI 83
Query: 65 MYQHDLFSPSLTVYEHLYFMAL---LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
+YQ P +TV E+LY L + R L LG+ T +
Sbjct: 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQ---LEHLGVDIDPDTPLKY 140
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
SI G+R+ + A L + ++ DEPT+ L + +L R++REL ++ +
Sbjct: 141 LSI--------GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE-GR 191
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAF 211
+L H+ ++I L D+ T F
Sbjct: 192 VILYVSHR--------MEEIFALCDAITVF 213
Score = 29.9 bits (68), Expect = 1.8
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 118 RIGSSSITQKVV-LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
I + S Q ++ LSGG +++ L D ++L DEPT G+D + ++ ++ EL
Sbjct: 384 NIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL- 442
Query: 177 SQRKKTVLCTIHQPSSEL---IDMFDKIILLADSRTA 210
+ + VL SS+L + + D+I+++ + R A
Sbjct: 443 AAQGVAVLFV----SSDLPEVLGVADRIVVMREGRIA 475
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 59.8 bits (145), Expect = 1e-10
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 41/198 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----------GKFRSAC 62
G ++ I+G SG+GKSTLL L+ RL D I +G +E R+
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88
Query: 63 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
GF++Q+ L RV A A I L+ +G + + R +
Sbjct: 89 GFVHQN----------------PRDGLRMRVSAG---ANIGERLMAIGARHYGNIRATAQ 129
Query: 123 SITQKV------------VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170
++V SGG ++RL A L+T P L+ DEPT GLD ++L+
Sbjct: 130 DWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189
Query: 171 MMRELTSQRKKTVLCTIH 188
++R L V+ H
Sbjct: 190 LLRGLVRDLGLAVIIVTH 207
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 59.9 bits (146), Expect = 1e-10
Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 69/218 (31%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRL--------PDDCI-----IDGDIRVNGKPV 54
G L + G SG+GKS+L+ AL++RL D I ID I ++ P+
Sbjct: 21 GVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPI 80
Query: 55 EGKFRS-----ACGFMYQHDLFSPS-------------------------LTVYE-HLYF 83
RS F +LF +TV E +F
Sbjct: 81 GRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFF 140
Query: 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 143
+ K+ R+++ L ++GL + ++G + T LSGGE +R+ A E
Sbjct: 141 ENIPKIARKLQT----------LCDVGL---GYIKLGQPATT----LSGGEAQRIKLAKE 183
Query: 144 LL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
L T L + DEPTTGL KL+ +++ L +
Sbjct: 184 LSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK 221
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 59.8 bits (145), Expect = 2e-10
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 37/196 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPV--------EGKF--RSA 61
G ++ I+G SG+GK+TLL +S RL PD + +R +G+P E + R+
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR-DGQPRDLYTMSEAERRRLLRTE 90
Query: 62 CGFMYQHDL------FSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLL--IELGLM 112
GF++Q+ S + E L MA+ + Y I A L +E+ L
Sbjct: 91 WGFVHQNPRDGLRMQVSAGGNIGERL--MAI-----GARHYGNIRAEAQDWLEEVEIDL- 142
Query: 113 NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 172
RI SGG ++RL A L+T P L+ DEPT GLD ++L+ ++
Sbjct: 143 ----DRIDD----LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 194
Query: 173 RELTSQRKKTVLCTIH 188
R L + V+ H
Sbjct: 195 RGLVRELGLAVVIVTH 210
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 59.8 bits (145), Expect = 2e-10
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 28/193 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALS--QRLPDDCI-IDGDIRVNGKPVEGKF----------- 58
G VA++G SG+GKST+L L + + + I ++G+ + G
Sbjct: 26 GEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQM 85
Query: 59 RSACGFMYQH-DLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQH 116
R+ G ++Q +LF P TV +++ +L L R +A +R LL +GL
Sbjct: 86 RNKIGMVFQSFNLF-PHKTVLDNVTEAPVLVLGMARAEAEKRAM---ELLDMVGL----- 136
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
+ LSGG+++R++ A L P ++L DE T+ LD +++ ++R L
Sbjct: 137 ---ADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLA 193
Query: 177 SQRKKTVLCTIHQ 189
S+ T+L H+
Sbjct: 194 SEHDLTMLLVTHE 206
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 60.4 bits (147), Expect = 2e-10
Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 41/215 (19%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G V +G SG GKSTLL A L D I G+ R+N V R G ++Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMN--DVPPAERGV-GMVFQSY 84
Query: 70 LFSPSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
P L+V E++ F LKL ++RV + + LL R
Sbjct: 85 ALYPHLSVAENMSFG--LKLAGAKKEEINQRVNQVAEVLQLAHLL----------DR--- 129
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
+ LSGG+R+R++ L+ +P++ L DEP + LD A+ ++M E++ K+
Sbjct: 130 ----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD---AALRVQMRIEISRLHKR 182
Query: 182 ---TVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213
T++ H E + + DKI++L R A +G
Sbjct: 183 LGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVG 216
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 59.6 bits (144), Expect = 2e-10
Identities = 51/215 (23%), Positives = 100/215 (46%), Gaps = 20/215 (9%)
Query: 15 LVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEGK------FRSACGFMY 66
+ A++G SG GKST L L++ L + I+G++ ++GK + K R G ++
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q P +++Y+++ + + + K +I + L + L + + S++
Sbjct: 92 QKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKI--VEWALKKAALWDEVKDDLKKSALK- 147
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+++RL A + P ++L DEPT+ LD S K+ +M EL + ++
Sbjct: 148 ---LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTH 204
Query: 187 IHQPSSELID-----MFDKIILLADSRTAFIGSKD 216
Q +S + D + +I + F+ +
Sbjct: 205 NMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQK 239
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 59.0 bits (144), Expect = 2e-10
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
G V I+G +G+GKS+LL AL RL + G I ++G + RS + Q
Sbjct: 29 PGEKVGIVGRTGSGKSSLLLAL-FRLVELS--SGSILIDGVDISKIGLHDLRSRISIIPQ 85
Query: 68 HD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
D LFS T+ +L + +A +R+ L + G +++ G +
Sbjct: 86 -DPVLFSG--TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGEN--- 139
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LS G+R+ L A LL +L+ DE T +D + + + + +RE TVL
Sbjct: 140 ----LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDC--TVLT 193
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGS 214
H+ + +ID D+I++L R S
Sbjct: 194 IAHRLDT-IID-SDRILVLDKGRVVEFDS 220
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 59.3 bits (143), Expect = 2e-10
Identities = 47/189 (24%), Positives = 94/189 (49%), Gaps = 23/189 (12%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG------KFRSAC 62
L ++ A++G SG GKST L L++ L + I+G++ GK + + R
Sbjct: 31 LKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKI 90
Query: 63 GFMYQHDLFSPS---LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
G ++Q +P+ +++Y+++ + + + K I + L + L N ++
Sbjct: 91 GMVFQ----TPNPFLMSIYDNISYGPKIHGTKDKKKLDEI--VEQSLKKSALWNEVKDKL 144
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
+++++ LSGG+++RL A L +P ++L DEPT+ LD S K+ ++ L +
Sbjct: 145 NTNALS----LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL--KE 198
Query: 180 KKTVLCTIH 188
T++ H
Sbjct: 199 SYTIIIVTH 207
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 59.5 bits (144), Expect = 2e-10
Identities = 62/225 (27%), Positives = 88/225 (39%), Gaps = 48/225 (21%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-----PDDCIIDGDIRVNGKPVEG--KFRSAC--- 62
G + A++G +GAGKSTLL AL+ L P + GD+ +NG+P+ R A
Sbjct: 27 GRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRA 86
Query: 63 --------GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS 114
F + L Y H L A+Q +A
Sbjct: 87 VLPQAAQPAFAFSAREIV-LLGRYPHARRAGALTHRDGEIAWQALA-------------- 131
Query: 115 QHTRIGSSSITQKVV--LSGGERKRLSFATEL---------LTDPALLLCDEPTTGLDSF 163
G++++ + V LSGGE R+ FA L P LL DEPT LD
Sbjct: 132 ---LAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188
Query: 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208
+L+ +R L VL +H P+ D+I +LAD
Sbjct: 189 HQHRLLDTVRRLARDWNLGVLAIVHDPNLA-ARHADRIAMLADGA 232
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 59.7 bits (145), Expect = 3e-10
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 31/220 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--------CGF 64
G + IMG SG+GKSTL+ L+ RL + G+I V+GK + +
Sbjct: 54 GEIFVIMGLSGSGKSTLVRLLN-RLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISM 110
Query: 65 MYQHDLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
++Q P TV E++ F + K +R +A + + L+ GL
Sbjct: 111 VFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELV-------GLEGYADKYPN 163
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG ++R+ A L DP +LL DE + LD +++ + EL ++ K
Sbjct: 164 E--------LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215
Query: 181 KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
KT++ H E + + D+I ++ D +G+ + L
Sbjct: 216 KTIVFITHD-LDEALRIGDRIAIMKDGEIVQVGTPEEILL 254
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 58.8 bits (143), Expect = 3e-10
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 47/191 (24%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-------------FR 59
G ++ I+G SG+GK+TLL ALS RL D G++ + + + R
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDA---GEVHYRMRDGQLRDLYALSEAERRRLLR 88
Query: 60 SACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
+ GF++QH L +V A I L+ +G + R
Sbjct: 89 TEWGFVHQH----------------PRDGLRMQVSAG---GNIGERLMAVGARHYGDIRA 129
Query: 120 GSSSITQKVVL------------SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 167
+ ++V + SGG ++RL A L+T P L+ DEPT GLD ++
Sbjct: 130 TAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQAR 189
Query: 168 LIRMMRELTSQ 178
L+ ++R L +
Sbjct: 190 LLDLLRGLVRE 200
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 58.9 bits (143), Expect = 3e-10
Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 29/178 (16%)
Query: 16 VAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEGK------FRSACGFMYQ 67
A +G SG GKSTLL ++ L D+C I+G+IR++G+ + K R G ++Q
Sbjct: 54 TAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQ 113
Query: 68 H-DLFSPSLTVYEHLYFMALLKL----DRRV--KAYQRIALINSLLIELGLMNSQHTRIG 120
+ F S +YE++ + L+L +RRV +A +R +L + L + R+
Sbjct: 114 RPNPFPKS--IYENVVYG--LRLQGINNRRVLDEAVER-SLRGA-----ALWDEVKDRLH 163
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
++ LSGG+++RL A + +P +LL DEPT+ LD S K+ ++ EL S+
Sbjct: 164 ENAFG----LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSK 217
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 58.5 bits (141), Expect = 4e-10
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 31/180 (17%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDC---IIDGDIRVNGKPVEG------KFRSACGFM 65
L A++G SG GKST L L+ R+ DD I G+I+ G+ + G + R G +
Sbjct: 32 LTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMV 90
Query: 66 YQHDLFSPSLTVYEHLYF---MALLK----LDRRVKAYQRIALINSLLIELGLMNSQHTR 118
+Q P +VY+++ + +A +K +D+RV+ + A I + N+Q
Sbjct: 91 FQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQ--- 146
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
SGG+++R+ A L P ++L DEPT+ LD S+S++ + EL Q
Sbjct: 147 ----------AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ 196
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 57.5 bits (140), Expect = 5e-10
Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 60/225 (26%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-----PVEGKFRSACGFMYQ 67
G + A+MG +G+GKSTL + P + +G+I G+ P E + R +Q
Sbjct: 26 GEVHALMGPNGSGKSTLAKTIMGH-PKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQ 84
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+ P + + L ++
Sbjct: 85 YPPEIPGVKNADFLRYV------------------------------------------N 102
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLD--SFSA-SKLIRMMRELTSQRKKTVL 184
SGGE+KR LL +P L + DEP +GLD + +++I +RE K+VL
Sbjct: 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE----EGKSVL 158
Query: 185 CTIHQPSSELIDMF--DKIILLADSRTAFIGSKDAALAFLESQGY 227
H L+D D++ +L D R G K+ AL +E +GY
Sbjct: 159 IITHYQ--RLLDYIKPDRVHVLYDGRIVKSGDKELALE-IEKKGY 200
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 58.4 bits (142), Expect = 5e-10
Identities = 56/218 (25%), Positives = 82/218 (37%), Gaps = 38/218 (17%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
V I+G +GAGKSTLL ++ G ++V GK G F P L
Sbjct: 56 VGIIGHNGAGKSTLLKLIAGIYKPTS---GKVKVTGKVAPL-IELGAG-------FDPEL 104
Query: 76 TVYEHLYFMALL------KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV- 128
T E++Y L+ ++D +V A ELG I Q V
Sbjct: 105 TGRENIYLRGLILGLTRKEIDEKVDEIIEFA-------ELG-----------DFIDQPVK 146
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
S G RL+F+ +P +LL DE D+ K + + EL + K VL + H
Sbjct: 147 TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVS-H 205
Query: 189 QPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQG 226
+ D+ I L + GS + + E
Sbjct: 206 DL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDL 242
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 59.3 bits (144), Expect = 5e-10
Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 33/182 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALS--QRLPDDCII--DGDIRVNGKPV----EGKFRSACG- 63
G +A++G SG+GKS + ALS + LP ++ GDIR +G+ + E R G
Sbjct: 35 GETLALVGESGSGKS--VTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGN 92
Query: 64 ---FMYQHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
++Q + S P T+ + LY + L R +A R ++N L R
Sbjct: 93 KIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREA-ARGEILNCL-----------DR 140
Query: 119 IGSSSITQKVV-----LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
+G +++ LSGGER+R+ A LLT P LL+ DEPTT LD +++++++R
Sbjct: 141 VGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLR 200
Query: 174 EL 175
EL
Sbjct: 201 EL 202
Score = 46.6 bits (111), Expect = 7e-06
Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G + ++G SG+GKST AL + + G+I +G+P+ R +
Sbjct: 312 GETLGLVGESGSGKSTTGLALLRLINSQ----GEIWFDGQPLHNLNRRQLLPVRHRIQVV 367
Query: 66 YQ--HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+Q + +P L V + L + A QR + +++ E+GL R +
Sbjct: 368 FQDPNSSLNPRLNV-LQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAE- 425
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
SGG+R+R++ A L+ P+L++ DEPT+ LD ++++ +++ L + +
Sbjct: 426 ------FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ 476
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 58.3 bits (141), Expect = 5e-10
Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 18/180 (10%)
Query: 17 AIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD 69
A++G SG GKSTLL L++ L + I G + ++G+ + G R G ++Q
Sbjct: 33 ALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKP 92
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQKV 128
P +++YE++ + L+ + +K + + ++ L L + R+ S +
Sbjct: 93 NPFP-MSIYENVAYG--LRA-QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFG--- 145
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+++RL A + +P ++L DEPT+ LD + K+ +M EL ++ T++ H
Sbjct: 146 -LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL--KKNYTIVIVTH 202
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 58.6 bits (141), Expect = 5e-10
Identities = 52/202 (25%), Positives = 99/202 (49%), Gaps = 19/202 (9%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI---IDGDIRVNGKPVEG-----KFRSACGFMY 66
+ ++MG +G+GK+T L L+ R+ D GD+ + G+ + +FR G ++
Sbjct: 49 VTSLMGPTGSGKTTFLRTLN-RMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLF 107
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q P +++ +++ +A ++ + V + + + L E+GL ++ R+ S
Sbjct: 108 QRPNPFP-MSIMDNV--LAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR- 163
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+++ L A L +P +LL DEPT+ LD + K+ +R L + TV+
Sbjct: 164 ---LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIV 218
Query: 187 IHQPSSELIDMFDKIILLADSR 208
H ++ + D+ L D R
Sbjct: 219 THN-LAQAARISDRAALFFDGR 239
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 57.7 bits (140), Expect = 7e-10
Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 51/227 (22%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK----------PVEGKFRSAC 62
G VAI+G SGAGKSTLL ++ L G + +NG+ PV F+
Sbjct: 25 GERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQ--- 78
Query: 63 GFMYQHDLFSPSLTVYEHLYFMAL-----LKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
+++LF LTV +++ L LKL+ A QR L +++ ++G+ +
Sbjct: 79 ----ENNLF-SHLTVAQNI---GLGLNPGLKLN----AAQREKL-HAIARQMGIED-LLA 124
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
R+ LSGG+R+R++ A L+ + +LL DEP + LD +++ ++ ++
Sbjct: 125 RLPGQ-------LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ 177
Query: 178 QRKKTVLCTIHQPSSELIDMFDKI----ILLADSRTAFIGSKDAALA 220
+R+ T+L H ++ +I +++AD R A+ G D L+
Sbjct: 178 ERQLTLLMVSHS-----LEDAARIAPRSLVVADGRIAWDGPTDELLS 219
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 57.9 bits (140), Expect = 7e-10
Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 31/186 (16%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFR 59
L+G +G ++ ++G +GAGKSTLLA ++ G I+ G+P+E +
Sbjct: 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GSGSIQFAGQPLEAWSATELA 71
Query: 60 SACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
++ Q ++ V+ +L R L+N + L L +
Sbjct: 72 RHRAYLSQQQTPPFAMPVWHYLTL--------HQPDKTRTELLNDVAGALALDDKLG--- 120
Query: 120 GSSSITQKVVLSGGERKRLSFATELL-----TDPA--LLLCDEPTTGLDSFSASKLIRMM 172
S Q LSGGE +R+ A +L +PA LLL DEP LD S L R++
Sbjct: 121 --RSTNQ---LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL 175
Query: 173 RELTSQ 178
L Q
Sbjct: 176 SALCQQ 181
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 57.9 bits (140), Expect = 9e-10
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 33/199 (16%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGK--------PVEGKFRSACG 63
+ A +G SG GKST+L + RL D ++G + +GK PVE R G
Sbjct: 38 ITAFIGPSGCGKSTILRCFN-RLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE--VRRRIG 94
Query: 64 FMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQ--RIALINSLLIELGLMNSQHTRIG 120
++Q + F S +Y+++ + A R+ Y+ L+ L + L + ++
Sbjct: 95 MVFQKPNPFPKS--IYDNIAYGA------RINGYKGDMDELVERSLRQAALWDEVKDKLK 146
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
S ++ LSGG+++RL A + P ++L DEP + LD S ++ +M EL + +
Sbjct: 147 QSGLS----LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL--KEQ 200
Query: 181 KTVLCTIH--QPSSELIDM 197
T++ H Q ++ + DM
Sbjct: 201 YTIIIVTHNMQQAARVSDM 219
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 57.0 bits (138), Expect = 1e-09
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
++ ++G +GAGKSTLL ++ L G+I +G P K G + +
Sbjct: 25 KNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHKIGSLIESPPL 81
Query: 72 SPSLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
+LT E+L LL L + I+ +L + L N+ + S+
Sbjct: 82 YENLTARENLKVHTTLLGLPD--------SRIDEVLNIVDLTNTGKKKAKQFSL------ 127
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
G ++RL A LL P LL+ DEPT GLD +L ++R Q
Sbjct: 128 --GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 58.1 bits (140), Expect = 1e-09
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 17/212 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLP---DDCIIDG-DI-RVNGKPVEGKFRSACGFMYQ 67
G + IMG SG+GKST++ L++ + +IDG DI +++ + R ++Q
Sbjct: 54 GEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ 113
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
P +TV ++ F L + A +R L ++GL N H+
Sbjct: 114 SFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPDE------ 164
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG R+R+ A L +P +LL DE + LD +++ + +L ++ ++T++
Sbjct: 165 --LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219
H E + + D+I ++ + +G+ D L
Sbjct: 223 HD-LDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 57.9 bits (141), Expect = 1e-09
Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 37/164 (22%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL------PDDCIIDGDIRVNGKPV----EGKFRSA- 61
G + ++GASGAGKSTL+ R P G + V+G+ + E + R A
Sbjct: 31 GEIFGVIGASGAGKSTLI-----RCINLLERPTS----GRVLVDGQDLTALSEKELRKAR 81
Query: 62 --CGFMYQH-DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
G ++QH +L S S TV++++ AL L+L KA + A + LL +GL + +
Sbjct: 82 RQIGMIFQHFNLLS-SRTVFDNV---ALPLELAGTPKA-EIKARVTELLELVGLSD-KAD 135
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
R + LSGG+++R++ A L ++P +LLCDE T+ LD
Sbjct: 136 RYPAQ-------LSGGQKQRVAIARALASNPKVLLCDEATSALD 172
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 57.0 bits (138), Expect = 1e-09
Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD---CIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G L ++G +GAGK+TL+ ++ + + DGD + P R+ G +Q
Sbjct: 31 GELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKP 90
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL-------INSLLIELGLMNSQHTRIGSS 122
+LTV E+L L D+ V A L I+ LL +GL + +
Sbjct: 91 TVFENLTVRENL--ELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL- 147
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LS G+++ L L DP LLL DEP G+ K +++ L K +
Sbjct: 148 -------LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL--AGKHS 198
Query: 183 VLCTIH 188
+L H
Sbjct: 199 ILVVEH 204
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 58.1 bits (141), Expect = 2e-09
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 29/180 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM--YQHDL 70
G + ++G SG+GKSTL AL + +P G+IR +G+ ++G R M + +
Sbjct: 313 GQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIRFDGQDIDGLSRKE---MRPLRRRM 365
Query: 71 ----------FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
SP +TV + L + ++ A +R + L E+GL + R
Sbjct: 366 QVVFQDPYGSLSPRMTV-GQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP 424
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
SGG+R+R++ A L+ P L+L DEPT+ LD ++++ ++R+L Q+K
Sbjct: 425 HE-------FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL--QQK 475
Score = 57.3 bits (139), Expect = 3e-09
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 19/188 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCII--DGDIRVNGKPVEG-------KFRSA-C 62
G +A++G SG+GKS ++ LP G I +G+ + R
Sbjct: 36 GETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKI 95
Query: 63 GFMYQHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
G ++Q + S P T+ + L +L+L R + A LL +G+ + R+
Sbjct: 96 GMIFQEPMTSLNPLHTIGKQLA--EVLRLHRGLSRAAARARALELLELVGIPEPEK-RLD 152
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
+ LSGG+R+R+ A L +P LL+ DEPTT LD ++++ +++EL ++
Sbjct: 153 AYPHE----LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG 208
Query: 181 KTVLCTIH 188
+L H
Sbjct: 209 MAILFITH 216
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 57.5 bits (139), Expect = 2e-09
Identities = 53/153 (34%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G + A++GASG GKSTLL A Q ++DG + P ++ M+Q
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP----YQRPINMMFQSY 100
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE-LGLMNSQHTRIGSSSITQKV 128
P +TV +++ F LK D+ KA I S + E LGL++ Q Q
Sbjct: 101 ALFPHMTVEQNIAFG--LKQDKLPKAE-----IASRVNEMLGLVHMQ--EFAKRKPHQ-- 149
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGG+R+R++ A L P LLL DEP LD
Sbjct: 150 -LSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 56.4 bits (136), Expect = 2e-09
Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 17 AIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPVEGK------FRSACGFMYQ 67
A +G SG GKST L + R+ D +C + G++ ++G V R+ G ++Q
Sbjct: 35 AFIGPSGCGKSTFLRCFN-RMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQ 93
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQ 126
P ++Y+++ + KL K +++ ++ L +GL R+ S+
Sbjct: 94 KPNPFPK-SIYDNVAYGP--KLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE- 149
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGG+++RL A + P +LL DEP + LD + + + +++EL
Sbjct: 150 ---LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL 195
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 57.4 bits (139), Expect = 3e-09
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 26/217 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPD----DCIIDG-DIRVNGKPVEGKFRSACGFMY 66
G VAI+G SGAGKST+L L R D IDG DIR + R A G +
Sbjct: 288 LGKTVAIVGESGAGKSTILRLLF-RFYDVNSGSITIDGQDIRD---VTQQSLRRAIGIVP 343
Query: 67 Q-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSS 123
Q LF+ T+ ++ + V A A I+ + L G T +G
Sbjct: 344 QDTVLFND--TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGY----DTGVGERG 397
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGGE++R++ A +L +P +L+ DE T+ LD+ + + +RE+++ R T
Sbjct: 398 LK----LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR--TT 451
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
L H+ S+ +ID D+II+L + R G+ + LA
Sbjct: 452 LVIAHRLST-IIDA-DEIIVLDNGRIVERGTHEELLA 486
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 57.3 bits (139), Expect = 3e-09
Identities = 67/233 (28%), Positives = 103/233 (44%), Gaps = 46/233 (19%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFR--- 59
L+GAAL+ G ++A++G +GAGKST++ L+ D G I GK V F
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLGKEV--TFNGPK 74
Query: 60 ----SACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR-VKAYQRI------ALINSLLIE 108
+ G ++Q P LT+ E+++ L R V + RI A + LL
Sbjct: 75 SSQEAGIGIIHQELNLIPQLTIAENIF------LGREFVNRFGRIDWKKMYAEADKLLAR 128
Query: 109 LGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL 168
L L S +G SI GE++ + A L + +++ DEPT L L
Sbjct: 129 LNLRFSSDKLVGELSI--------GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180
Query: 169 IRMMRELTSQRKKTVLCTIHQPSSELIDMF---DKIILLADSRTAFIGSKDAA 218
R++REL SQ I S L ++F D + + D + FI ++ A
Sbjct: 181 FRVIRELKSQG-----RGIVYISHRLKEIFEICDDVTVFRDGQ--FIAEREVA 226
Score = 48.8 bits (117), Expect = 2e-06
Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 33/213 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRS-----ACGFMY 66
G ++ + G GAG++ L+ L LP G + ++G V RS A G +Y
Sbjct: 277 KGEILGVSGLMGAGRTELMKVLYGALPRTS---GYVTLDGHEV--VTRSPQDGLANGIVY 331
Query: 67 -----QHDLFSPSLTVYEHLYFMALLKLDR---RVKAYQRIALINSLLIELGLMNSQHTR 118
+ D ++V E++ AL R +K ++ + L N
Sbjct: 332 ISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFI---RLFN----- 383
Query: 119 IGSSSITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
I + S+ Q + +LSGG +++++ A L+T P +L+ DEPT G+D A K I +L +
Sbjct: 384 IKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD-VGAKKEI---YQLIN 439
Query: 178 QRKKTVLCTIHQPSS--ELIDMFDKIILLADSR 208
Q K L I S E++ M D+I+++ + R
Sbjct: 440 QFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 57.1 bits (138), Expect = 3e-09
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGGE++R+ A +L +P L L DEPT LD +A + + E +++ T H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 190 PSSELI-DMFDKIILLADSRTAFIGSKDAALA-FLES 224
P E+I D+ DK I L + G+ D +A F+E
Sbjct: 229 P--EVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEG 263
Score = 43.6 bits (103), Expect = 7e-05
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD----CIIDGDIRVN----GKPVEGKFRSACGF 64
G + I+G SGAGK+TL ++ L + GD V+ G G+ + G
Sbjct: 310 GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGI 369
Query: 65 MYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT--RIG- 120
++Q +DL+ P TV ++L + I L L EL M + T +G
Sbjct: 370 LHQEYDLY-PHRTVLDNLT--------------EAIGL--ELPDELARMKAVITLKMVGF 412
Query: 121 ----SSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
+ I K LS GER R++ A L+ +P +++ DEPT +D
Sbjct: 413 DEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 56.0 bits (135), Expect = 3e-09
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 21/184 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQ-RLPDD---CIIDGDIRVNGKPVEG---KFRSACGF 64
G + ++G SGAGKS+LL L+ +P I + P + R G
Sbjct: 27 EGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGM 86
Query: 65 MYQHDLFSPSLTVYEHLYF--MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
++Q P LTV E+L +L L + + L+ L R+
Sbjct: 87 VFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRL------------RLKPY 134
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
+ + LSGG+++R++ A L+ +P +LL DEPT LD ++++ +++EL
Sbjct: 135 ADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQ 194
Query: 183 VLCT 186
V+ T
Sbjct: 195 VIVT 198
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 55.6 bits (134), Expect = 4e-09
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 30/188 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G + ++G +G+GKSTLL L + P +G+I ++ +P+E F ++ Q
Sbjct: 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQ 93
Query: 69 DLFSPSLTVYE------HLYFMALLKLDR--RVKAYQRIALINSLLIELGLMNSQHTRIG 120
+ +TV E + + AL + R K + I+L+ GL H +
Sbjct: 94 LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV-------GLKPLAHRLVD 146
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
S LSGGER+R A + D LL DEPT+ LD ++ ++ L+ +R
Sbjct: 147 S--------LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG 198
Query: 181 KTVLCTIH 188
TV+ +H
Sbjct: 199 LTVIAVLH 206
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 55.4 bits (133), Expect = 5e-09
Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 15 LVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVE------GKFRSACGFMY 66
+ AI+G SG GKST + L++ L ++G + G+ + + R G ++
Sbjct: 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVF 94
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q P +++YE++ + +++ ++ ++ S L L ++ S++
Sbjct: 95 QRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALG- 150
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
LSGG+++RL A L P +LL DEP + LD + K+ ++ L S+
Sbjct: 151 ---LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE 199
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 55.6 bits (134), Expect = 5e-09
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 25/176 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNG--------KPVEGKFRSA 61
G + A++G SG GKST+L +L++ L + C + G + +G PVE R
Sbjct: 38 RGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE--VRRR 95
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ--RIALINSLLIELGLMNSQHTRI 119
G ++Q P ++YE++ F A R+ Y L+ L + + + ++
Sbjct: 96 IGMVFQQPNPFPK-SIYENIAFGA------RINGYTGDMDELVERSLRKAAVWDECKDKL 148
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
S + LSGG+++RL A + +P ++L DEP + LD S K+ M EL
Sbjct: 149 NESGYS----LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL 200
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 55.5 bits (134), Expect = 5e-09
Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 30/201 (14%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 68
+G VA++G SG GKSTLL A L P G++ P+ + R M+Q
Sbjct: 37 AGQFVAVVGRSGCGKSTLLRLLAGLET--PSA----GELLAGTAPL-AEAREDTRLMFQD 89
Query: 69 DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
P V +++ L LK R A Q +A +GL + +
Sbjct: 90 ARLLPWKKVIDNV---GLGLKGQWRDAALQALA-------AVGLADRANE--------WP 131
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+++R++ A L+ P LLL DEP LD+ + ++ ++ L Q TVL
Sbjct: 132 AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191
Query: 188 HQPSSELIDMFDKIILLADSR 208
H SE + M D+++L+ + +
Sbjct: 192 HD-VSEAVAMADRVLLIEEGK 211
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 55.4 bits (133), Expect = 6e-09
Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 39/182 (21%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI----IDGDIRVNGKPVEGK------FRSAC 62
+ +G SG GKST+L +L++ +D + +G + G+ V GK R
Sbjct: 34 NEITGFIGPSGCGKSTVLRSLNRM--NDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYI 91
Query: 63 GFMYQHDLFSP-SLTVYEHLYFMALLKLDR-------RVK-AYQRIALINSLLIELGLMN 113
G ++Q +P S+++++++ F L+L+R RVK A Q AL + +
Sbjct: 92 GMVFQQP--NPFSMSIFDNVAFG--LRLNRYKGDLGDRVKHALQGAALWDEV-------- 139
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
++ S ++ LSGG+++RL A + T+P +LL DEP + LD + ++ +M
Sbjct: 140 --KDKLKVSGLS----LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV 193
Query: 174 EL 175
EL
Sbjct: 194 EL 195
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 53.2 bits (129), Expect = 6e-09
Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGGE+ RL+ A LL +P LLL DEPT LD S L ++E TV+ H
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSH- 125
Query: 190 PSSELIDMF-DKIILL 204
+D KII L
Sbjct: 126 -DRYFLDQVATKIIEL 140
Score = 34.0 bits (79), Expect = 0.037
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD 40
+ ++G +GAGKSTLL ++ L D
Sbjct: 29 IGLVGRNGAGKSTLLKLIAGELEPD 53
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 56.1 bits (136), Expect = 7e-09
Identities = 67/216 (31%), Positives = 104/216 (48%), Gaps = 29/216 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G VAI+G SG+GKSTLL L L + G + +G+ + G R G + Q+
Sbjct: 479 GEFVAIVGPSGSGKSTLLRLL---LGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535
Query: 69 -DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL---INSLLIELGLMNSQHTRIGSSSI 124
L S S ++E++ A L LD +A + L I ++ +G+ HT I
Sbjct: 536 GRLMSGS--IFENIAGGAPLTLDEAWEAARMAGLAEDIRAM--PMGM----HTVISEGGG 587
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
T LSGG+R+RL A L+ P +LL DE T+ LD+ + + ++ E + K T +
Sbjct: 588 T----LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA----IVSESLERLKVTRI 639
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I D+I +L R G+ D +A
Sbjct: 640 VIAHRLST--IRNADRIYVLDAGRVVQQGTYDELMA 673
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 54.3 bits (131), Expect = 7e-09
Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 41/208 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G + I+G +GAGKSTL+ AL R + +G I ++G + RS+ + Q
Sbjct: 34 GEKIGIVGRTGAGKSTLILALF-RFLE--AEEGKIEIDGIDISTIPLEDLRSSLTIIPQ- 89
Query: 69 DLFSPSLTVYEHLYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
P+L F ++ LD + Y + +L + G +N
Sbjct: 90 ---DPTL-------FSGTIRSNLDPFDE-YSDEEIYGALRVSEGGLN------------- 125
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LS G+R+ L A LL P +L+ DE T +D + + + + +RE + T+L
Sbjct: 126 ---LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT--NSTILTI 180
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGS 214
H+ + +ID +DKI+++
Sbjct: 181 AHRLRT-IID-YDKILVMDAGEVKEYDH 206
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 54.9 bits (132), Expect = 7e-09
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 16/210 (7%)
Query: 13 GTLVAIMGASGAGKSTLLAAL--SQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G +V ++GA+GAGK+TLL L R I+ + R A + +
Sbjct: 31 GEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR 90
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
+TV E+L R + +RI + L L + R G+ +
Sbjct: 91 VFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRL--HERRIQRAGT--------M 138
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGGE++ L+ L++ P LLL DEP+ GL ++ + +L Q L + Q
Sbjct: 139 SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL--VEQN 196
Query: 191 SSELIDMFDKIILLADSRTAFIGSKDAALA 220
+++ + + D+ +L + + DA LA
Sbjct: 197 ANQALKLADRGYVLENGHVVLEDTGDALLA 226
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 54.3 bits (131), Expect = 9e-09
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSP 73
I G SG GKSTLL ++ + G + G+ + +R + Q +P
Sbjct: 38 ITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQ----TP 90
Query: 74 SL---TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
+L TVY++L F + R + ++ L L ++ I + +I + L
Sbjct: 91 TLFGDTVYDNLIFPWQI----RNQQPDPAIFLDDL-ERFALPDT----ILTKNIAE---L 138
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGGE++R+S L P +LL DE T+ LD + + ++ ++ VL H
Sbjct: 139 SGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTH-- 196
Query: 191 SSELIDMFDKIILL 204
+ I+ DK+I L
Sbjct: 197 DKDEINHADKVITL 210
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 55.6 bits (134), Expect = 9e-09
Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 46/224 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G ++ G G+G++ L+ L D G+IR+NGK + + S
Sbjct: 289 GEILGFAGLVGSGRTELMNCL---FGVDKRAGGEIRLNGKDISPR--------------S 331
Query: 73 PSLTVYEHLYFMALLKLDRRVKAY-------QRIALINSLLI-----ELGLMNSQHTR-- 118
P V + MA + RR + Q +A+ SL +GL + +
Sbjct: 332 PLDAVKKG---MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRT 388
Query: 119 ---------IGSSSITQKVV-LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL 168
+ S+ Q + LSGG ++++ + L P +++ DEPT G+D + +++
Sbjct: 389 AENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEI 448
Query: 169 IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 212
++MR+L K ++ + P E+I + D+I + + R I
Sbjct: 449 YKVMRQLADDGKVILMVSSELP--EIITVCDRIAVFCEGRLTQI 490
Score = 51.3 bits (123), Expect = 2e-07
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 32/209 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMY 66
G + A++G +GAGKSTL+ LS G I +N + G +Y
Sbjct: 30 PGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIY 86
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRV---------KAYQRIALINSLLIELGLMNSQHT 117
Q LTV E+LY L ++V + R A+ +L+ +GL
Sbjct: 87 QELSVIDELTVLENLYIGRHLT--KKVCGVNIIDWREMRVRAAM---MLLRVGLKVDLDE 141
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
++ + SI+ K + L A L+ D +++ DEPT+ L + L +M +L
Sbjct: 142 KVANLSISHK--------QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK 193
Query: 178 QRKKTVLCTIHQPSSELIDMFDKIILLAD 206
+ V I +E+ + D+ ++ D
Sbjct: 194 EGTAIVY--ISHKLAEIRRICDRYTVMKD 220
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 55.2 bits (133), Expect = 1e-08
Identities = 58/216 (26%), Positives = 88/216 (40%), Gaps = 26/216 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMY----QH 68
G+LV ++G +GAGK+TLL A++ L G + V G VE A Q
Sbjct: 29 GSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARAASRRVASVPQD 85
Query: 69 DLFSPSLTVYEHLYFMA----LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
S V + M + D + + +E + + + +
Sbjct: 86 TSLSFEFDV-RQVVEMGRTPHRSRFDTWTETDRAA-------VERAMERTGVAQFADRPV 137
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
T LSGGER+R+ A L +LL DEPT LD + + ++R L KT +
Sbjct: 138 TS---LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAV 193
Query: 185 CTIHQPSSELIDMF-DKIILLADSRTAFIGSKDAAL 219
IH +L + D+++LLAD R G L
Sbjct: 194 AAIH--DLDLAARYCDELVLLADGRVRAAGPPADVL 227
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 54.3 bits (131), Expect = 1e-08
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 39/185 (21%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDG----------DIRVNGKPVE-GKFRSAC 62
+ A++G SG+GKST L +L+ R+ D ID I +N K + + R
Sbjct: 47 KITALIGPSGSGKSTYLRSLN-RMNDT--IDIARVTGQILYRGIDINRKEINVYEMRKHI 103
Query: 63 GFMYQH-DLFSPSLTVYEHLYFMAL--------LKLDRRVKAYQRIALINSLLIELGLMN 113
G ++Q + F+ S +YE++ F AL LD V+ + A L +
Sbjct: 104 GMVFQRPNPFAKS--IYENITF-ALERAGVKDKKVLDEIVETSLKQA---------ALWD 151
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
+ S++T LSGG+++RL A + P +LL DEP + LD S +L M
Sbjct: 152 QVKDDLHKSALT----LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF 207
Query: 174 ELTSQ 178
EL
Sbjct: 208 ELKKN 212
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 54.0 bits (130), Expect = 1e-08
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 38/210 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD--- 69
G + A++G SG+GKST++A L G + ++GKP+ Y+H
Sbjct: 40 GEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPIS---------QYEHKYLH 87
Query: 70 -----------LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
LF+ SL +++ + VK + A +S + EL T
Sbjct: 88 SKVSLVGQEPVLFARSLQ--DNIAYGLQSCSFECVKEAAQKAHAHSFISELAS--GYDTE 143
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+G LSGG+++R++ A L+ +P +L+ DE T+ LD+ S ++ + + +
Sbjct: 144 VGEKG----SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD--WP 197
Query: 179 RKKTVLCTIHQPSSELIDMFDKIILLADSR 208
++TVL H+ S ++ D+I++L R
Sbjct: 198 ERRTVLVIAHRLS--TVERADQILVLDGGR 225
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 54.0 bits (130), Expect = 1e-08
Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 27/176 (15%)
Query: 17 AIMGASGAGKSTLLAALSQRLPDDCI----IDGDIRVNGKPVEG------KFRSACGFMY 66
A++G SG GKST L L++ +D I ++G+I ++G+ + + R G ++
Sbjct: 36 ALIGPSGCGKSTFLRCLNRM--NDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVF 93
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL----LIELGLMNSQHTRIGSS 122
Q P +++E++ + RV + A + L L + R+ S
Sbjct: 94 QKPNPFPK-SIFENVAY------GLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHES 146
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
++ LSGG+++RL A L +P +LL DEP + LD + K+ ++ EL ++
Sbjct: 147 ALG----LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR 198
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 54.5 bits (131), Expect = 1e-08
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 27/194 (13%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPVEG------KFRSACGF 64
++ A++G SG GKST L L+ R+ D IDG + ++G+ + + R G
Sbjct: 72 SVTALIGPSGCGKSTFLRCLN-RMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGM 130
Query: 65 MYQHDLFSPSLTVYEHLYFMA----------LLKLDRRVKAYQRIALINSLLIELGLMNS 114
++Q P ++ E++ + L +L R L+ L + L +
Sbjct: 131 VFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
+ R+ +++ LSGG+++RL A L DP ++L DEP + LD + SK+ ++ E
Sbjct: 190 VNDRLDDNALG----LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEE 245
Query: 175 LTSQRKKTVLCTIH 188
L + TV+ H
Sbjct: 246 LAEEY--TVVVVTH 257
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 54.7 bits (132), Expect = 2e-08
Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 32/203 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEGKFRSACGFMYQH- 68
G +VA++G SG+GKST+ AAL Q L P G + ++G P+ + ++++
Sbjct: 506 PGEVVALVGPSGSGKSTV-AALLQNLYQPTG----GQVLLDGVPLV---QYDHHYLHRQV 557
Query: 69 -------DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
LFS S+ E++ + D + A + A + ++E N T +G
Sbjct: 558 ALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIMEF--PNGYDTEVGE 613
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG+++R++ A L+ P +L+ DE T+ LD+ ++++E S+ +
Sbjct: 614 KG----SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECE----QLLQESRSRASR 665
Query: 182 TVLCTIHQPSSELIDMFDKIILL 204
TVL H+ S ++ D+I++L
Sbjct: 666 TVLLIAHRLS--TVERADQILVL 686
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 54.6 bits (132), Expect = 2e-08
Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 25/205 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
+G VA++G SG+GKST+ A L R D I +G+I ++G + R+ + Q
Sbjct: 368 AGKTVALVGRSGSGKSTI-ANLLTRFYD--IDEGEILLDGHDLRDYTLASLRNQVALVSQ 424
Query: 68 H-DLFSPSLT---VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+ LF+ ++ Y + +++ + + IN + + GL T IG +
Sbjct: 425 NVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKM--DNGL----DTVIGENG 478
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
V+LSGG+R+R++ A LL D +L+ DE T+ LD+ S + + EL Q+ +T
Sbjct: 479 ----VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTS 532
Query: 184 LCTIHQPSSELIDMFDKIILLADSR 208
L H+ S+ I+ D+I+++ D
Sbjct: 533 LVIAHRLST--IEKADEILVVEDGE 555
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 54.7 bits (132), Expect = 2e-08
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 24/212 (11%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQHDLF 71
I+G SG+GKSTL L G+I +NG ++ R ++ Q + +
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQ-EPY 558
Query: 72 SPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLL--IELGLMNSQHTRIGSSSITQKV 128
S ++ E+L A + + + A IA I + + LG T + +
Sbjct: 559 IFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGY----QTELSEEGSS--- 611
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
+SGG+++R++ A LLTD +L+ DE T+ LD+ + K++ + L KT++ H
Sbjct: 612 -ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ---DKTIIFVAH 667
Query: 189 QPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
+ S + DKII+L + GS D L
Sbjct: 668 RLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 54.0 bits (130), Expect = 2e-08
Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 24/186 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIID-GDIRVNGKPVEGKF----RSACGFMY 66
G AI+G +G+GKSTL+ ++ L P + DI + K + K+ R G ++
Sbjct: 33 GKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHK-TKDKYIRPVRKRIGMVF 91
Query: 67 Q---HDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
Q LF ++ E ++ K++ VK Y + LL++LG + S
Sbjct: 92 QFPESQLFEDTVE-REIIFGPKNFKMNLDEVKNYA-----HRLLMDLGFSRD----VMSQ 141
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
S Q +SGG+ ++++ + L +P +++ DEPT GLD S +++R+++ L + KT
Sbjct: 142 SPFQ---MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKT 198
Query: 183 VLCTIH 188
++ H
Sbjct: 199 IILVSH 204
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 53.2 bits (128), Expect = 2e-08
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAAL-SQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
+G VA+ G SGAGKSTLL +L + LPD G I V EG + + L
Sbjct: 33 AGECVALSGPSGAGKSTLLKSLYANYLPDS----GRILVRH---EGAWVDLAQASPREVL 85
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-HTRIGSS----SIT 125
T+ Y L++ RV A + ++ L+E G+ R +I
Sbjct: 86 EVRRKTIG---YVSQFLRVIPRVSA---LEVVAEPLLERGVPREAARARARELLARLNIP 139
Query: 126 QKV------VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
+++ SGGE++R++ A + D +LL DEPT LD+ + ++ ++ E ++
Sbjct: 140 ERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARG 199
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 53.5 bits (129), Expect = 2e-08
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 31/178 (17%)
Query: 17 AIMGASGAGKSTLLAALS--------QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 68
A +G SG GKSTLL + QR + ++DG+ + K R+ G ++Q
Sbjct: 43 AFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQK 102
Query: 69 DLFSPSLTVYEHLYFMALL-------KLDRRV-KAYQRIALINSLLIELGLMNSQHTRIG 120
P +++Y+++ F L ++D RV A + AL N + ++
Sbjct: 103 PTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV----------KDKLH 151
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
S + LSGG+++RL A + P +LL DEP + LD S ++ ++ EL
Sbjct: 152 QSGYS----LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD 205
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 53.5 bits (128), Expect = 3e-08
Identities = 48/188 (25%), Positives = 93/188 (49%), Gaps = 27/188 (14%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-------------GKFRSA 61
+ AI+G SG GKST L L+ R+ + ++ ++RV G+ VE + R
Sbjct: 35 VTAIIGPSGCGKSTFLKCLN-RMNE---LESEVRVEGR-VEFFNQNIYERRVNLNRLRRQ 89
Query: 62 CGFMYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
++ P ++VY+++ Y + ++ +++ ++ S L + L + +I
Sbjct: 90 VSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEID---DIVESALKDADLWDEIKHKIH 145
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
S++ LSGG+++RL A L P +LL DEP GLD ++ K+ +++ L + +
Sbjct: 146 KSALD----LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE 201
Query: 181 KTVLCTIH 188
T++ H
Sbjct: 202 LTMVIVSH 209
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 53.0 bits (128), Expect = 3e-08
Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 58/175 (33%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
+ ++G SG GKSTL + G+I GK +
Sbjct: 42 LGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDI--------------------- 77
Query: 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV------ 129
++ +R + LL ++GL ++ +
Sbjct: 78 ---------------TKLSKEERRERVLELLEKVGL-------------PEEFLYRYPHE 109
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+R+R+ A L +P L++ DEP + LD ++++ ++++L + T L
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYL 164
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 53.1 bits (128), Expect = 3e-08
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 34/216 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL---PDDCIIDGDIRVNGKPVEGKF-RSACGFMYQ- 67
G V ++G +G+GKSTL+ L+ L IIDG + + K V+ R G ++Q
Sbjct: 33 GEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDG-VDITDKKVKLSDIRKKVGLVFQY 91
Query: 68 --HDLFSPSLTVYEHLYF----MALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
+ LF T+ + + F + L + ++ RVK I +GL
Sbjct: 92 PEYQLFEE--TIEKDIAFGPINLGLSEEEIENRVKRAMNI---------VGL--DYEDYK 138
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
S LSGG+++R++ A + +P +L+ DEPT GLD +++ ++EL +
Sbjct: 139 DKSPFE----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY 194
Query: 180 KKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGS 214
T++ H S E + D+II++ + G+
Sbjct: 195 NMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGT 228
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 53.2 bits (128), Expect = 4e-08
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 20/177 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGK--------PVEGKFRSA 61
T+ A +G SG GKST L L+ R+ D C + G I ++G+ VE R+
Sbjct: 45 KTVTAFIGPSGCGKSTFLRCLN-RMNDTIDGCRVTGKITLDGEDIYDPRLDVVE--LRAR 101
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
G ++Q P ++YE++ + + R KA + SL + GL R+
Sbjct: 102 VGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLR-KAGLWEEVKDRLHE 159
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
LSGG+++RL A + P ++L DEP + LD + +K+ ++ EL
Sbjct: 160 PGTG----LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQN 212
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 52.8 bits (127), Expect = 4e-08
Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 58/235 (24%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALS-----QRLPDDCIIDGDIRVNGKPV--- 54
L G +LS G+ A++G +GAGKSTLL L+ QR G ++V G+ V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR--------GRVKVMGREVNAE 72
Query: 55 -EGKFRSACGFMYQ---HDLFSPSLTVYEHLYF----MALLK--LDRRVKAYQRIALINS 104
E RS G ++Q +F S TV++ + F M L K ++RRV+ AL
Sbjct: 73 NEKWVRSKVGLVFQDPDDQVF--SSTVWDDVAFGPVNMGLDKDEVERRVEE----ALKAV 126
Query: 105 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
+ + H LS G++KR++ A L DP +++ DEP LD
Sbjct: 127 RMWDFRDKPPYH-------------LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173
Query: 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF----DKIILLADSRTAFIGSK 215
L+ ++ L + KTV+ H +D+ D++I+L + R G K
Sbjct: 174 QETLMEILDRL-HNQGKTVIVATHD-----VDLAAEWADQVIVLKEGRVLAEGDK 222
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 52.7 bits (126), Expect = 4e-08
Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 29/189 (15%)
Query: 15 LVAIMGASGAGKSTLLAALSQ--------RLPDDCIIDGD----IRVNGKPVEGKFRSAC 62
+ A++G SG GKST L ++ + I+ D + P+E + R +
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISM 103
Query: 63 GFMYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRI--ALINSLLIELGLMNSQHTRI 119
F + + F S ++E++ Y + + + RR +R+ AL N+ L + R+
Sbjct: 104 VFQ-KPNPFPKS--IFENVAYGLRIRGVKRRSILEERVENALRNA-----ALWDEVKDRL 155
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
G + LSGG+++RL A L TDP +LL DEPT+ LD + + + ++ +L +
Sbjct: 156 GDLAFN----LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL--KN 209
Query: 180 KKTVLCTIH 188
K T+L H
Sbjct: 210 KVTILIVTH 218
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 53.8 bits (129), Expect = 4e-08
Identities = 66/250 (26%), Positives = 108/250 (43%), Gaps = 48/250 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--CGFMYQHDL 70
G L+A+ G++G+GKS+LL +I G++ +P EGK + + F Q
Sbjct: 452 GQLLAVAGSTGSGKSSLLM----------MIMGEL----EPSEGKIKHSGRISFSPQTSW 497
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM---NSQHTRIGSSSITQK 127
P T+ +++ F L D Y+ ++I + +E + T +G IT
Sbjct: 498 IMPG-TIKDNIIFG--LSYDE----YRYTSVIKACQLEEDIALFPEKDKTVLGEGGIT-- 548
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCT 186
LSGG+R R+S A + D L L D P T LD + ++ + +L S + + ++ +
Sbjct: 549 --LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVT 246
E + DKI+LL + F G+ F E Q DF L +
Sbjct: 607 ----KLEHLKKADKILLLHEGVCYFYGT------FSELQA-------KRPDFSSLLLGLE 649
Query: 247 TNDELSSRRR 256
D S+ RR
Sbjct: 650 AFDNFSAERR 659
Score = 38.0 bits (88), Expect = 0.006
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G V ++G +G+GKSTLL+AL + L +G+I+++G +R A G + Q
Sbjct: 1245 GQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTLQTWRKAFGVIPQK 1300
Query: 69 -----DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL----INSLLIELGLMNSQHTRI 119
F +L YE + K+ V I ++ +L++ G
Sbjct: 1301 VFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG--------- 1351
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
VLS G ++ + A +L+ +LL DEP+ LD + + + +++
Sbjct: 1352 --------YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 53.6 bits (129), Expect = 5e-08
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
T+IGS LSGG ++++ LLT P +L+ DEPT G+D + ++ +++
Sbjct: 384 GHRTQIGS--------LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA 435
Query: 174 ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 212
EL + K ++ + P EL+ + D+I+++++ A I
Sbjct: 436 ELAKKDKGIIIISSEMP--ELLGITDRILVMSNGLVAGI 472
Score = 35.1 bits (81), Expect = 0.041
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA 61
++ A+MG +GAGKSTLL L D G I GK ++ F+S+
Sbjct: 23 PHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEID--FKSS 67
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 52.7 bits (126), Expect = 5e-08
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 19/171 (11%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI----IDGDIRVNGKPVEG------KFRSACGF 64
+ A++G SG GKST L ++++ +D I +G+I G + R G
Sbjct: 49 VTALIGPSGCGKSTFLRSINRM--NDLIPSARSEGEILYEGLNILDSNINVVNLRREIGM 106
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P ++Y ++ AL R K+ + SL + L + R+ SS++
Sbjct: 107 VFQKPNPFPK-SIYNNITH-ALKYAGERRKSVLDEIVEESL-TKAALWDEVKDRLHSSAL 163
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+ LSGG+++RL A L PA+LL DEP + LD S +K+ ++ EL
Sbjct: 164 S----LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL 210
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 52.4 bits (125), Expect = 5e-08
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 15 LVAIMGASGAGKSTLLAALSQ--------RLPDDCIIDGDIRVNGKPVEGKFRSACGFMY 66
+ AI+G SG GKSTLL AL++ RL ++D + + R G ++
Sbjct: 32 ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVF 91
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSIT 125
Q P ++++++ F + A R+ ++ L + L + + S +
Sbjct: 92 QQPNPFPK-SIFDNVAFGPRM---LGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLA 147
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGG+++RL A L +P ++L DEP + LD S ++ +M+EL
Sbjct: 148 ----LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL 193
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 53.3 bits (128), Expect = 6e-08
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 20/213 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF-----RSACGFMYQ 67
G V + G +GAGKSTL+ LS P DG+I +G P++ R+ ++Q
Sbjct: 27 GECVGLCGENGAGKSTLMKILSGVYPHGT-WDGEIYWSGSPLKASNIRDTERAGIVIIHQ 85
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL-INSLLIELGLMNSQHTRIGSSSITQ 126
P L+V E+++ + L AY + L +LL EL L TR
Sbjct: 86 ELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGD---- 141
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
GG+++ + A L LL+ DEP++ L L+ ++R+L + V C
Sbjct: 142 ---YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL---KAHGVACV 195
Query: 187 -IHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218
I +E+ + D I ++ D + + +KD +
Sbjct: 196 YISHKLNEVKAVCDTICVIRDGQ--HVATKDMS 226
Score = 44.4 bits (105), Expect = 4e-05
Identities = 45/210 (21%), Positives = 98/210 (46%), Gaps = 29/210 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL-- 70
G ++ + G GAG++ L+ AL P +G++ +NGKPV+ + + +
Sbjct: 286 GEILGVAGLVGAGRTELVQALFGAYPGKF--EGNVFINGKPVDIR---NPAQAIRAGIAM 340
Query: 71 ---------FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI-- 119
P L V +++ L K++ I++ EL ++ S R+
Sbjct: 341 VPEDRKRHGIVPILGVGKNITLSVL-------KSFCFKMRIDAA-AELQIIGSAIQRLKV 392
Query: 120 -GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+S LSGG +++ A LLT+P +L+ DEPT G+D + ++ +++ +L +
Sbjct: 393 KTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452
Query: 179 RKKTVLCTIHQPSSELIDMFDKIILLADSR 208
++ + E++ + D+++++ + +
Sbjct: 453 GVAIIVVSSELA--EVLGLSDRVLVIGEGK 480
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 53.4 bits (129), Expect = 6e-08
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 41/159 (25%)
Query: 13 GTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQ-HDL 70
G +V ++G +GAGKSTL ++ Q PD G I++ G+ V+ ++ Q D
Sbjct: 348 GGIVGVIGPNGAGKSTLFRMITGQEQPDS----GTIKI-GETVK------LAYVDQSRDA 396
Query: 71 FSPSLTVYEH----LYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 122
P+ TV+E L + L K + +AY +G N Q ++G
Sbjct: 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAY------------VGRFNFKGSDQQKKVG-- 442
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGGER R+ A L + +LL DEPT LD
Sbjct: 443 ------QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
Score = 51.8 bits (125), Expect = 2e-07
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 40/203 (19%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G + ++G +GAGKSTLL ++ +D + +P G G++ Q
Sbjct: 29 FPGAKIGVLGLNGAGKSTLLRIMAG-------VDKEFNGEARPAPG---IKVGYLPQEPQ 78
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIAL--------INSLLIELGLMNSQHTRIGSS 122
P+ TV E++ + ++ + + I+ +++LL E + +
Sbjct: 79 LDPTKTVRENV-EEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW 137
Query: 123 SITQKV-----------------VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165
+ +K+ LSGGER+R++ LL+ P +LL DEPT LD+ S
Sbjct: 138 DLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESV 197
Query: 166 SKLIRMMRELTSQRKKTVLCTIH 188
+ L + ++E TV+ H
Sbjct: 198 AWLEQHLQEY----PGTVVAVTH 216
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 52.3 bits (126), Expect = 7e-08
Identities = 67/263 (25%), Positives = 125/263 (47%), Gaps = 41/263 (15%)
Query: 13 GTLVAIMGASGAGKST---LLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH- 68
G VAI+G +G+GKST +L L + + IDG I ++ + ++ + R G ++Q+
Sbjct: 35 GEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-ITISKENLK-EIRKKIGIIFQNP 92
Query: 69 DLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
D TV + + F L+ ++V + +I+ L ++G M + +
Sbjct: 93 DNQFIGATVEDDIAF----GLENKKVPPKKMKDIIDDLAKKVG-MEDYLDKEPQN----- 142
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+++R++ A+ L +P +++ DE T+ LD ++ ++M +L RKKT++
Sbjct: 143 --LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISIT 200
Query: 188 HQPSSELIDM-----FDKIILLADSRTAFIGSKDAALA---FLESQGYPCPYGYNPADFL 239
H DM DK+I+ ++ + G L LE P+ Y +
Sbjct: 201 H-------DMDEAILADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSK-K 252
Query: 240 IKSLAVTTN-DELSSRRRLKRIC 261
+K + T N +EL +++IC
Sbjct: 253 LKGIDPTYNEEEL-----IEQIC 270
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 51.3 bits (124), Expect = 7e-08
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 40/205 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G LVAI+G G+GKS+LL+AL L + G + V G ++ Q
Sbjct: 31 GELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPGS---------IAYVSQ----E 74
Query: 73 P---SLTVYEHLYFMALLKLDRRVKAYQRI----ALINSL-LIELGLMNSQHTRIGSSSI 124
P + T+ E++ F +R Y+++ AL L ++ G + T IG I
Sbjct: 75 PWIQNGTIRENILFGKPFDEER----YEKVIKACALEPDLEILPDGDL----TEIGEKGI 126
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKTV 183
LSGG+++R+S A + +D + L D+P + +D+ + + L K +
Sbjct: 127 N----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRI 182
Query: 184 LCTIHQPSSELIDMFDKIILLADSR 208
L T HQ +L+ D+I++L + R
Sbjct: 183 LVT-HQL--QLLPHADQIVVLDNGR 204
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 52.1 bits (125), Expect = 7e-08
Identities = 63/261 (24%), Positives = 128/261 (49%), Gaps = 32/261 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL-PDD-----CIIDGDIRVNGKPVEGKFRSACGFM 65
G+ A++G +G+GKST+ ++ L PDD +DG I + K V R G +
Sbjct: 32 RGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTAKTV-WDIREKVGIV 89
Query: 66 YQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+Q+ D TV + + F L+ +R V + I ++ +L ++G+++ +
Sbjct: 90 FQNPDNQFVGATVGDDVAFG--LE-NRAVPRPEMIKIVRDVLADVGMLDYIDS------- 139
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ LSGG+++R++ A L +P +++ DE T+ LD ++++++R+L + TV+
Sbjct: 140 -EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVI 198
Query: 185 CTIHQPSSELID---MFDKIILLADSRTAFIGSKD---AALAFLESQGYPCPYGYNPADF 238
H ID M D++++L D + GS + + L+ G P+ Y +
Sbjct: 199 SITHD-----IDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNK 253
Query: 239 LIKSLAVTTNDELSSRRRLKR 259
L + ++ E+++ +L +
Sbjct: 254 LKEK-GISVPQEINTEEKLVQ 273
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 51.9 bits (125), Expect = 9e-08
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 36/194 (18%)
Query: 12 SGTLVAIMGASGAGKSTLLAAL---------SQRLPDDCIIDGDIRVNGKPVEGKFRSAC 62
SG+ VAI+G +G+GKSTLL L + + + I G KP+ R
Sbjct: 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPL----RKKV 87
Query: 63 GFMYQ---HDLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
G ++Q H LF TV + + F + + D + KA + I L+ GL
Sbjct: 88 GIVFQFPEHQLFEE--TVEKDICFGPMNFGVSEEDAKQKAREMIELV-------GLPEEL 138
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
R LSGG+ +R++ A L +P +L+ DEPT GLD +++ M +L
Sbjct: 139 LAR-------SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKL 191
Query: 176 TSQRKKTVLCTIHQ 189
++ T + H
Sbjct: 192 HKEKGLTTVLVTHS 205
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 52.7 bits (126), Expect = 1e-07
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 133
++++YE++ F VK + A I+ IE L N T +G + LSGG
Sbjct: 1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEF-IE-SLPNKYDTNVGPYGKS----LSGG 1362
Query: 134 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 193
+++R++ A LL +P +LL DE T+ LDS S + + + ++ + KT++ H+ +S
Sbjct: 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS- 1421
Query: 194 LIDMFDKIILLADSRTAFIGSKDAALAFLESQG 226
I DKI++ + D +F+++ G
Sbjct: 1422 -IKRSDKIVVF--------NNPDRTGSFVQAHG 1445
Score = 43.9 bits (103), Expect = 8e-05
Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 58/235 (24%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG----KPVEGKF-RSACGFMYQ 67
G A +G SG GKST+L L +RL D +GDI +N K + K+ RS G + Q
Sbjct: 411 GKTYAFVGESGCGKSTILK-LIERLYDP--TEGDIIINDSHNLKDINLKWWRSKIGVVSQ 467
Query: 68 HDL-FSPSL--TVYEHLYFMALLK----------------LDRRVKAYQRIALINSLLI- 107
L FS S+ + LY + L+ ++R + A + +
Sbjct: 468 DPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527
Query: 108 -----ELGLMNSQHTRIGSS---SITQKVV----------------------LSGGERKR 137
EL M + I S +++KV+ LSGG+++R
Sbjct: 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQR 587
Query: 138 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
+S A ++ +P +L+ DE T+ LD+ S + + + L + + H+ S+
Sbjct: 588 ISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST 642
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 52.1 bits (126), Expect = 1e-07
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 46/206 (22%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G ++ I+G +G GK+T L+ L PD+ +D +++++ KP Q+
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKP-------------QYIKP 411
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
TV + L + D +Y + +I L +E R+ ++ LS
Sbjct: 412 DYDGTVEDLLRSIT----DDLGSSYYKSEIIKPLQLE---------RLLDKNVKD---LS 455
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDS---FSASKLI-RMMRELTSQRKKTVLCTI 187
GGE +R++ A L D L L DEP+ LD + +K I R+ E R+ T L
Sbjct: 456 GGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE----REATALVVD 511
Query: 188 HQPSSELIDMFDKIILLADSRTAFIG 213
H I M D ++D F G
Sbjct: 512 HD-----IYMID---YISDRLMVFEG 529
Score = 41.7 bits (99), Expect = 3e-04
Identities = 61/236 (25%), Positives = 86/236 (36%), Gaps = 95/236 (40%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL----------PD-DCIID----------------G 45
G + I+G +G GK+T + LS L P D ++ G
Sbjct: 99 GKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNG 158
Query: 46 DIRVNGKP---------VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAY 96
+I+V KP +GK R +L L K+D R K
Sbjct: 159 EIKVVHKPQYVDLIPKVFKGKVR---------EL---------------LKKVDERGK-- 192
Query: 97 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156
++ ++ LGL N I LSGGE +R++ A LL D DEP
Sbjct: 193 -----LDEVVERLGLENILDRDISE--------LSGGELQRVAIAAALLRDADFYFFDEP 239
Query: 157 TTGLD---SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL--LADS 207
T+ LD + ++LI REL K VL H D +L LAD+
Sbjct: 240 TSYLDIRQRLNVARLI---RELA--EGKYVLVVEH----------DLAVLDYLADN 280
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 52.6 bits (126), Expect = 1e-07
Identities = 49/211 (23%), Positives = 92/211 (43%), Gaps = 27/211 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK--FRSACGFMYQHDL 70
G LVA++G G GKS+LL+AL + VEG + + ++ Q
Sbjct: 664 GALVAVVGQVGCGKSSLLSALLAEM--------------DKVEGHVHMKGSVAYVPQQAW 709
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
+ ++ E++ F L + + AL+ L I L + T IG + L
Sbjct: 710 IQ-NDSLRENILFGKALNEKYYQQVLEACALLPDLEI---LPSGDRTEIGEKGVN----L 761
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQ 189
SGG+++R+S A + ++ + L D+P + +D+ + ++ + KT + H
Sbjct: 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHG 821
Query: 190 PSSELIDMFDKIILLADSRTAFIGSKDAALA 220
S + D II+++ + + +GS L
Sbjct: 822 IS--YLPQVDVIIVMSGGKISEMGSYQELLQ 850
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 51.3 bits (123), Expect = 1e-07
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 14 TLVAIMGASGAGKSTLLAALSQR---LPDDCIIDGDIRVNGKPVEGK------FRSACGF 64
++ A +G SG GKST+L L++ +P ++G++ ++G+ + G R G
Sbjct: 31 SVTAFIGPSGCGKSTVLRTLNRMHEVIPG-ARVEGEVLLDGEDLYGPGVDPVAVRRTIGM 89
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P++++ +++ +A LKL+ L+ L L N R+
Sbjct: 90 VFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGG 147
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
LSGG+++RL A + +P +LL DEP + LD S + ++ EL
Sbjct: 148 G----LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQD 197
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 51.2 bits (123), Expect = 1e-07
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 23/174 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALS-QRLPD--DCIIDG---DIRVNGKPVEG-KFRSACGF 64
G + ++G SGAGKS+LL L+ +P I G D + R G
Sbjct: 27 QGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGM 86
Query: 65 MYQHDLFSPSLTVYEHLYF--MALLKLDRRVKAYQRIALINSL-LIELGLMNSQHTRIGS 121
++Q P LTV ++L +L L + + L+ L L H
Sbjct: 87 VFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH----- 141
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGG+++R++ A L+ +P +LL DEPT LD ++++ ++REL
Sbjct: 142 --------LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL 187
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 52.0 bits (125), Expect = 1e-07
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 22/214 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G ++ I G +G+GKSTLL +L QR D + +GDIR + P+ +RS + Q
Sbjct: 341 GQMLGICGPTGSGKSTLL-SLIQRHFD--VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397
Query: 69 D-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE-LGLMNSQHTRIGSSSITQ 126
LFS TV ++ AL + D + + +A + S+ + L L T +G +
Sbjct: 398 PFLFSD--TVANNI---ALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGE----R 448
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
V+LSGG+++R+S A LL + +L+ D+ + +D + +++ +R+ R TV+ +
Sbjct: 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGR--TVIIS 506
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ L + +I+++ A G+ D
Sbjct: 507 AHRLSA-LTEA-SEILVMQHGHIAQRGNHDQLAQ 538
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 52.0 bits (125), Expect = 2e-07
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 29/176 (16%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM--Y-- 66
+G + A++G +GAGKSTL+ ++ +P D G + + G P + + Y
Sbjct: 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLV 91
Query: 67 -QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q L P+L+V E++ L L +R + Q++ LL LG + GS +
Sbjct: 92 PQEPLLFPNLSVKENI----LFGLPKRQASMQKMK---QLLAALGCQLDLDSSAGSLEVA 144
Query: 126 -QKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+++V L G L+ D +L+ DEPT L +L +REL +Q
Sbjct: 145 DRQIVEILRG-----------LMRDSRILILDEPTASLTPAETERLFSRIRELLAQ 189
Score = 39.3 bits (92), Expect = 0.002
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG ++++ A L P LL+ DEPT G+D + + + +++R + +Q + I
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF--ISS 461
Query: 190 PSSELIDMFDKIILLADSRTAFIGSKDA-------ALAFLESQG 226
E+ M D+++++ + + A LAF E Q
Sbjct: 462 DLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMRLAFGEHQA 505
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 51.0 bits (122), Expect = 2e-07
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMYQHD 69
G +AI+G +G+GKSTL L+ + G+I +N P+ FRS M D
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHFGDYSFRSKRIRMIFQD 95
Query: 70 ---LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
+P L + + L F L+L+ ++ QR I L +GL+ H
Sbjct: 96 PNTSLNPRLRIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLL-PDHANYYPH---- 148
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+L+ G+++R++ A L+ P +++ DE LD S+LI +M EL
Sbjct: 149 --MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLEL 195
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 51.8 bits (125), Expect = 2e-07
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 20/113 (17%)
Query: 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 134
+TV E L F A +IA L+++GL + ++G + T LSGGE
Sbjct: 784 MTVEEALEFFE---------AIPKIARKLQTLVDVGL---GYIKLGQPATT----LSGGE 827
Query: 135 RKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+R+ A EL T L + DEPTTGL KL+ ++ L + TV+
Sbjct: 828 AQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVI 879
Score = 32.6 bits (75), Expect = 0.31
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 18/82 (21%)
Query: 130 LSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK--TVL 184
LSGGE +R+ AT++ LT L + DEP+ GL +LI ++ L R TV+
Sbjct: 482 LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNERLIETLKRL---RDLGNTVI 537
Query: 185 CTIHQPSSELIDMFDKIILLAD 206
H I AD
Sbjct: 538 VVEHDE---------DTIRAAD 550
Score = 31.8 bits (73), Expect = 0.45
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRL 37
G + G SG+GKSTL+ AL++ L
Sbjct: 627 GVFTCVTGVSGSGKSTLINDTLVPALARHL 656
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 50.9 bits (122), Expect = 2e-07
Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 21/212 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC-------GFM 65
G + AIMG SG GK+TLL + ++ D G+I +G+ + RS +
Sbjct: 33 GKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSML 89
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+Q + V++++ + + L LL +M + + ++
Sbjct: 90 FQSGALFTDMNVFDNVAY----------PLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL 139
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGG +R + A + +P L++ DEP G D + L++++ EL S T +
Sbjct: 140 MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVV 199
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217
H E++ + D ++AD + GS A
Sbjct: 200 VSHD-VPEVLSIADHAYIVADKKIVAHGSAQA 230
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 51.3 bits (123), Expect = 3e-07
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQHDLF 71
VA++G +G+GKSTL + L P +G+IR++G+P+ R M Q D
Sbjct: 370 VALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVA-MVQQDPV 425
Query: 72 SPSLTVYEHLYFMALLKLDRRV---KAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQ 126
+ T F+A + L R + + +Q AL L EL L + +T +G Q
Sbjct: 426 VLADT------FLANVTLGRDISEEQVWQ--ALETVQLAELARSLPDGLYTPLGE----Q 473
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LS G+++ L+ A L+ P +L+ DE T +DS + + + + + R+ T L
Sbjct: 474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAV---REHTTLVV 530
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
I S +++ D I++L + G+ LA
Sbjct: 531 IAHRLSTIVEA-DTILVLHRGQAVEQGTHQQLLA 563
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 51.1 bits (122), Expect = 3e-07
Identities = 48/200 (24%), Positives = 96/200 (48%), Gaps = 34/200 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLP---DDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G+LVAI+G +G GK++L++A+ L ++ R + ++ Q
Sbjct: 643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV--------------IRGSVAYVPQVS 688
Query: 70 -LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
+F+ TV E++ F + + +R +A AL + L + G T IG +
Sbjct: 689 WIFNA--TVRENILFGSDFESERYWRAIDVTALQHDLDLLPG---RDLTEIGERGVN--- 740
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRELTSQRKKTVLCT 186
+SGG+++R+S A + ++ + + D+P + LD+ A ++ M EL + + V
Sbjct: 741 -ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQ 799
Query: 187 IHQPSSELIDMFDKIILLAD 206
+H + + D+IIL+++
Sbjct: 800 LH-----FLPLMDRIILVSE 814
Score = 33.0 bits (75), Expect = 0.18
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
S G+R+ LS A LL +L+ DE T +D + S + R +RE + T+L H+
Sbjct: 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE--EFKSCTMLVIAHR 1429
Query: 190 PSSELIDMFDKIILLA 205
++ +ID DKI++L+
Sbjct: 1430 LNT-IIDC-DKILVLS 1443
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 51.1 bits (123), Expect = 3e-07
Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 46/210 (21%)
Query: 12 SGTLVAIMGASGAGKST---LLAALSQRLPDDCIIDGDIRVNGKPVE--GKFRSACGF-M 65
G VA++G SG+GKST L+A L Q G+I +G P E + A M
Sbjct: 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPW------SGEILFDGIPREEIPREVLANSVAM 557
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI-----------NSLLIELGLMNS 114
D+F TV ++L D + + A I ++ L E G N
Sbjct: 558 VDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG-AN- 615
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
LSGG+R+RL A L+ +P++L+ DE T+ LD + + +R
Sbjct: 616 ---------------LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR- 659
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILL 204
+R T + H+ S+ I D+II+L
Sbjct: 660 ---RRGCTCIIVAHRLST--IRDCDEIIVL 684
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 49.7 bits (119), Expect = 3e-07
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 37/191 (19%)
Query: 4 LELTGAALS-GTLVAIMGASGAGKSTLLAALSQRL-PD--DCIIDGDIRVNGKP--VEGK 57
LE+ G ++S ++ I+G +G GK+T + L+ L PD D I+ D V+ KP ++
Sbjct: 15 LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIKAD 73
Query: 58 FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
+ + L S + Y H YF + + L IE +++ +
Sbjct: 74 YEGTVRDL----LSSITKDFYTHPYF--------------KTEIAKPLQIE-QILDREVP 114
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
LSGGE +R++ A L D + L DEP+ LD +++R
Sbjct: 115 E-----------LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163
Query: 178 QRKKTVLCTIH 188
+KT H
Sbjct: 164 NNEKTAFVVEH 174
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 48.7 bits (117), Expect = 4e-07
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 14/83 (16%)
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI- 187
VLSGGE++RL+FA LL P + DE T+ LD S +L ++++EL T+
Sbjct: 91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--------GITVI 142
Query: 188 ---HQPSSELIDMFDKIILLADS 207
H+PS L D+++ L
Sbjct: 143 SVGHRPS--LWKFHDRVLDLDGE 163
Score = 31.4 bits (72), Expect = 0.32
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 18 IMGASGAGKSTLLAALS 34
I G SG GKS+L AL+
Sbjct: 32 ITGPSGTGKSSLFRALA 48
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 49.5 bits (119), Expect = 4e-07
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMYQ 67
G L I+G +GAGK+T++ ++ + D +G + G + G R+ G +Q
Sbjct: 28 GELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQ 84
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKA--YQRI-----ALINSLLIELGLMNSQHTRIG 120
+LTV+E+L L D+ V A + R+ I +L +GL + G
Sbjct: 85 KPTVFENLTVFENL--ELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG 142
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160
LS G+++ L L+ DP LLL DEP G+
Sbjct: 143 L--------LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 49.7 bits (119), Expect = 4e-07
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 31/182 (17%)
Query: 12 SGTLVAIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSA 61
SG VA++G SG GKSTL L L P G++ G+P+ FR
Sbjct: 37 SGETVALLGRSGCGKSTLARLLVGLES--PSQ----GNVSWRGEPLAKLNRAQRKAFRRD 90
Query: 62 CGFMYQHDL--FSPSLTVYEHLY--FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
++Q + +P TV E + LL LD+ +R+A + +L + L +S
Sbjct: 91 IQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA----ERLARASEMLRAVDLDDSVLD 146
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
+ LSGG+ +R+ A L +P LL+ DE + LD + +IR++++L
Sbjct: 147 KRPPQ-------LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199
Query: 178 QR 179
Q
Sbjct: 200 QF 201
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 50.2 bits (120), Expect = 5e-07
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 33/198 (16%)
Query: 8 GAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDC-----IIDGDIRVN----GKPVE 55
A+L G + +MG SG+GKSTLL A++ L + DGD V+
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVN-GLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 56 GKFRSACGFM-YQHDLFSPSLTVYEHLYF---MA-LLKLDRRVKAYQRIALINSLLIELG 110
+ R+ M +Q P TV E++ F M + K +RR + +++ L+ G
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELV-------G 153
Query: 111 LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170
L + G LSGG ++R+ A T+ +LL DEP + LD ++L
Sbjct: 154 LAQWADRKPGE--------LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQD 205
Query: 171 MMRELTSQRKKTVLCTIH 188
+ EL S+ KKT++ H
Sbjct: 206 ELLELQSKLKKTIVFVSH 223
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 48.1 bits (115), Expect = 6e-07
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 130 LSGGERKRLSFATEL---LTDPA-LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGGE++ + A L P L + DE GLD L + E + V+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEH-LVKGAQVIV 136
Query: 186 TIHQPSSELIDMFDKII 202
H P EL ++ DK+I
Sbjct: 137 ITHLP--ELAELADKLI 151
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 49.9 bits (120), Expect = 7e-07
Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 38/221 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF-----RSACGFMYQ 67
G +V++ G +GAGKSTL+ LS P +G+I G+ ++ R+ ++Q
Sbjct: 31 GEIVSLCGENGAGKSTLMKVLSGVYPHGT-YEGEIIFEGEELQASNIRDTERAGIAIIHQ 89
Query: 68 HDLFSPSLTVYEHLY---------FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
L+V E+++ M + R + LL +L L + T
Sbjct: 90 ELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQK---------LLAQLKLDINPATP 140
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+G+ L G+++ + A L LL+ DEPT L + L+ ++R+L
Sbjct: 141 VGN--------LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL--- 189
Query: 179 RKKTVLCT-IHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218
+ + C I +E+ + D I ++ D R IG++ AA
Sbjct: 190 KAHGIACIYISHKLNEVKAISDTICVIRDGRH--IGTRPAA 228
Score = 43.0 bits (102), Expect = 1e-04
Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRS-----ACGFMY- 66
G ++ I G GAG++ L+ L P +G+I ++GKPV K R+ A G
Sbjct: 288 GEILGIAGLVGAGRTELVQCLFGAYPGRW--EGEIFIDGKPV--KIRNPQQAIAQGIAMV 343
Query: 67 ----QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS--QHTRIG 120
+ D P + V ++ + L LDR + + I+ EL + Q ++
Sbjct: 344 PEDRKRDGIVPVMGVGKN---ITLAALDR----FTGGSRIDDAA-ELKTILESIQRLKVK 395
Query: 121 SSSITQKVV-LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
++S + LSGG +++ A LL +P +L+ DEPT G+D + ++ +++ +L Q
Sbjct: 396 TASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 48.0 bits (114), Expect = 8e-07
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
Q + LSGGE +R++ A LL + L DEP+ LD R +R L+ + KKT L
Sbjct: 68 QYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127
Query: 186 TIH 188
H
Sbjct: 128 VEH 130
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 49.8 bits (119), Expect = 8e-07
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 24/196 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G +VA++G SGAGK+TLL + + R + VE + +
Sbjct: 409 GDVVAVVGQSGAGKTTLLRMILGAQKG--RGEEKYRPDSGKVEVPKNTVSALIPGEYEPE 466
Query: 73 -PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
+T+ EHL R A+ +L GL ++ R S LS
Sbjct: 467 FGEVTILEHL---------RSKTGDLNAAV--EILNRAGLSDAVLYRRKFSE------LS 509
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
G+++R A L P +LL DE LD +A ++ R + EL + T++ H+P
Sbjct: 510 TGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP- 568
Query: 192 SELIDMF--DKIILLA 205
E+ + D +IL+
Sbjct: 569 -EVGNALRPDTLILVG 583
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 49.0 bits (117), Expect = 9e-07
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE---GKFRSACGFMYQHD--- 69
+AI+G +G+GKSTL L+ + G++ ++ P+ +RS M D
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPST 98
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
+P + + L F L+L+ ++ QR I L ++GL+ + +
Sbjct: 99 SLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPH-------M 149
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
L+ G+++RL A L+ P +++ DE LD S+LI +M EL
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 48.5 bits (116), Expect = 9e-07
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 33/190 (17%)
Query: 13 GTLVAIMGASGAGKS-TLLAALSQRLPDDCIIDGDIRVNGKPVE-----GKF-------- 58
G ++A++G SG+GKS T AAL G + ++GKPV G+
Sbjct: 29 GRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNP 88
Query: 59 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
RSA F+P T++ H A K L +L +GL N+ R
Sbjct: 89 RSA---------FNPLHTMHTH----ARETCLALGKPADDATLTAALE-AVGLENAA--R 132
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+ + +SGG +R+ A LL + ++ DEPTT LD + ++++ ++ + +
Sbjct: 133 VLKLYPFE---MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK 189
Query: 179 RKKTVLCTIH 188
R +L H
Sbjct: 190 RALGMLLVTH 199
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 49.6 bits (119), Expect = 9e-07
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 21/108 (19%)
Query: 75 LTVYE-HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 133
+TV E + +F A+ + R+++ L ++GL + R+G + T LSGG
Sbjct: 791 MTVEEAYEFFEAVPSISRKLQ----------TLCDVGL---GYIRLGQPATT----LSGG 833
Query: 134 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
E +R+ A EL T L + DEPTTGL KL+ +++ L +
Sbjct: 834 EAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK 881
Score = 34.2 bits (79), Expect = 0.076
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 130 LSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGGE +R+ AT++ LT L + DEP+ GL +LI ++ L
Sbjct: 489 LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNRRLINTLKRL 536
Score = 31.9 bits (73), Expect = 0.43
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRL 37
G I G SG+GKSTL+ AL+ RL
Sbjct: 634 GLFTCITGVSGSGKSTLINDTLYPALANRL 663
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 49.6 bits (119), Expect = 9e-07
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 42/217 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G + I G SGAGK++LL AL+ P G R++ F+ Q
Sbjct: 419 GERLLITGESGAGKTSLLRALAGLWPW-----GSGRISMPADSALL-----FLPQRPYLP 468
Query: 73 P-SLTVYEHLYFMALLKLDRRVKAYQRI------ALINSLLIELGL--MNSQHTRIGSSS 123
+L R Y A + ++L ++GL + +
Sbjct: 469 QGTL---------------REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWD 513
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
VLSGGE++RL+FA LL P + DE T+ LD + +L ++++E TV
Sbjct: 514 R----VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPD--ATV 567
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
+ H+P+ L + + + L D A
Sbjct: 568 ISVGHRPT--LWNFHSRQLELLDDAGGQNLKPPALPT 602
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 48.6 bits (115), Expect = 1e-06
Identities = 63/268 (23%), Positives = 122/268 (45%), Gaps = 44/268 (16%)
Query: 5 ELTGAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDCI--IDGDIRVNGKPVEGK-- 57
+L G + S G V+I+G +G+GKST + RL D +G ++++G+ + +
Sbjct: 22 QLNGVSFSITKGEWVSIIGQNGSGKST-----TARLIDGLFEEFEGKVKIDGELLTAENV 76
Query: 58 --FRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS 114
R G ++Q+ D TV + + F ++ + + I ++ L+ + +++
Sbjct: 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGME---NQGIPREEMIKRVDEALLAVNMLDF 133
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
+ TR + LSGG+++R++ A + P +++ DE T+ LD +++R++ E
Sbjct: 134 K-TR-------EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHE 185
Query: 175 LTSQRKKTVLCTIHQ----PSSE--LIDMFDKIILLADSRTAFIGSKDAA---------- 218
+ + + TVL H SS+ L+ +II A F S+D
Sbjct: 186 IKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVPFSS 245
Query: 219 --LAFLESQGYPCPYGYNPADFLIKSLA 244
+ L G+ P Y D L++ LA
Sbjct: 246 NLMKDLRKNGFDLPEKYLSEDELVELLA 273
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 47.9 bits (114), Expect = 1e-06
Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 42/193 (21%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIID----GDIRVNG------KPVEGKF-RSA 61
G + + G SGAGKSTLL + C I+ G I +G K E F R
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLI-------CGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLK------LDRRVKAYQRIALINSLLIELGLMNSQ 115
G ++Q TVY+++ ++ + RRV A L ++GL++
Sbjct: 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSA---------ALDKVGLLDKA 131
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+ LSGGE++R+ A ++ PA+LL DEPT LD + ++R+ E
Sbjct: 132 KNF--------PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF 183
Query: 176 TSQRKKTVLCTIH 188
++ TVL H
Sbjct: 184 -NRVGVTVLMATH 195
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 47.9 bits (114), Expect = 1e-06
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 22/164 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA-CGFMYQHDL 70
+G + + G +GAGK+TLL L+ L + G I+++GK RS ++
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVES---GQIQIDGKTATRGDRSRFMAYLGHLPG 92
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV- 129
L+ E+L+F+ L RR K AL +G + +V
Sbjct: 93 LKADLSTLENLHFLCGLH-GRRAKQMPGSAL---------------AIVGLAGYEDTLVR 136
Query: 130 -LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 172
LS G++KRL+ A L+ L L DEP LD + + RM+
Sbjct: 137 QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 48.4 bits (115), Expect = 1e-06
Identities = 43/185 (23%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCII---DGDIRVNGKPVEG------KFRSACGF 64
++ A++G SG GKST + L+ R+ D +G I ++G + + R G
Sbjct: 30 SVTALIGPSGCGKSTFIRTLN-RMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGM 88
Query: 65 MYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++Q P ++++++ Y + + D +R+ L L + ++ S+
Sbjct: 89 VFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERV---EESLKAAALWDEVKDKLDKSA 144
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGG+++RL A + P ++L DEP + LD S +K+ ++ +L + T+
Sbjct: 145 LG----LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL--KEDYTI 198
Query: 184 LCTIH 188
+ H
Sbjct: 199 VIVTH 203
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 48.8 bits (117), Expect = 1e-06
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 38/205 (18%)
Query: 4 LELTGAALS-GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC 62
LE+ + G ++ I+G +G GK+T + L+ + D + D++V+ KP
Sbjct: 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKP--------- 407
Query: 63 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
Q+ TV + + ++ +Y + ++ L +E L+
Sbjct: 408 ----QYISPDYDGTVED--LLRSAIR-SAFGSSYFKTEIVKPLNLE-DLLERPVDE---- 455
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS---FSASKLIRMMRELTSQR 179
LSGGE +R++ A L + L L DEP+ LD +K+IR E
Sbjct: 456 -------LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIE---NN 505
Query: 180 KKTVLCTIHQPSSELIDMF-DKIIL 203
+KT L H +ID D++I+
Sbjct: 506 EKTALVVDHDIY--MIDYVSDRLIV 528
Score = 45.4 bits (108), Expect = 2e-05
Identities = 57/196 (29%), Positives = 83/196 (42%), Gaps = 42/196 (21%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKP----VEGKFRSACGFMY 66
G +V I+G +G GKST L L+ L P+ R P V +FR G
Sbjct: 99 PGKVVGILGPNGIGKSTALKILAGELKPNLG------RYEDPPSWDEVIKRFR---GTEL 149
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRR-VKAYQRIALI--------NSLL---IELGLMNS 114
Q+ YF L + + R V Q + LI LL E G +
Sbjct: 150 QN-------------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDE 196
Query: 115 QHTRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 172
R+G ++ + V LSGGE +R++ A LL D + DEP++ LD R++
Sbjct: 197 VVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI 256
Query: 173 RELTSQRKKTVLCTIH 188
REL ++ K V+ H
Sbjct: 257 REL-AEDGKYVIVVEH 271
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 47.3 bits (113), Expect = 1e-06
Identities = 42/194 (21%), Positives = 70/194 (36%), Gaps = 60/194 (30%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
LV + G SG+GKSTL+ + +
Sbjct: 20 LNVLVVVTGVSGSGKSTLV-----------------------------NEGLYASGKARL 50
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV-VL 130
L + + + +L LI++GL G ++ QK+ L
Sbjct: 51 ISFLPKFSRNKLIFIDQL--------------QFLIDVGL--------GYLTLGQKLSTL 88
Query: 131 SGGERKRLSFATELL--TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
SGGE +R+ A+EL L + DEP+TGL ++L+ +++ L TV+ H
Sbjct: 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIEH 147
Query: 189 QP-----SSELIDM 197
+ +ID
Sbjct: 148 NLDVLSSADWIIDF 161
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 48.6 bits (116), Expect = 1e-06
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G + I+G SG+GKS AL L + I G NG+ + K R+ M
Sbjct: 42 GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISM 101
Query: 66 -YQHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQRIALINSL-LIELGLMNSQHTRIGS 121
+Q + S P + V E L M +L L + + + A S+ +++ M R+
Sbjct: 102 IFQDPMTSLNPYMRVGEQL--MEVLMLHKGMSKAE--AFEESVRMLDAVKMPEARKRMKM 157
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
SGG R+R+ A LL P LL+ DEPTT LD ++++ ++ EL
Sbjct: 158 YPHE----FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 207
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 48.4 bits (116), Expect = 1e-06
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 43/217 (19%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDD--CIIDGDIRVNGKPVEGK-----FRSAC 62
G + ++G SG GK+T+L A PD ++DG + P E + F+S
Sbjct: 40 GEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQ-DITHVPAENRHVNTVFQS-- 94
Query: 63 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
+ LF P +TV+E++ F L++ + A I ++E L Q
Sbjct: 95 -----YALF-PHMTVFENVAFG--LRMQKTPAAE-----ITPRVME-ALRMVQLEEFAQR 140
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR-ELTS-QRK 180
Q LSGG+++R++ A ++ P +LL DE + LD KL + M+ EL + QRK
Sbjct: 141 KPHQ---LSGGQQQRVAIARAVVNKPKVLLLDESLSALD----YKLRKQMQNELKALQRK 193
Query: 181 ---KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
V T Q E + M D+I+++ D R G+
Sbjct: 194 LGITFVFVTHDQ--EEALTMSDRIVVMRDGRIEQDGT 228
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 48.1 bits (114), Expect = 2e-06
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 39/201 (19%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDG---------------DIRVNGKPVEGKFR 59
++A +G SG GKSTLL + R+ D +I G D ++N K R
Sbjct: 48 IIAFIGPSGCGKSTLLRCFN-RMND--LIPGAKVEGRLLYRDRNIYDSQINSV----KLR 100
Query: 60 SACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ--RIALINSLLIELGLMNSQHT 117
G ++Q P ++YE++ F R Y+ L+ L +
Sbjct: 101 RQVGMVFQRPNPFPK-SIYENIAFAP------RANGYKGNLDELVEDSLRRAAIWEEVKD 153
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
++ + LSGG+++RL A + P +LL DEP + LD S ++ + EL
Sbjct: 154 KLKE----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209
Query: 178 QRKKTVLCTIH--QPSSELID 196
Q T++ H Q +S + D
Sbjct: 210 QY--TIIMVTHNMQQASRVAD 228
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 47.7 bits (113), Expect = 2e-06
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 22/184 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA-----CGFMYQ 67
G AI+G +G GKSTLL LS+ + G + ++G+ ++ + S G + Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQ-HYASKEVARRIGLLAQ 88
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE-LGLMNSQHTRIGSSSITQ 126
+ +TV E L+ R Y L E + G + +
Sbjct: 89 NATTPGDITVQE------LVARGR----YPHQPLFTRWRKEDEEAVTKAMQATGITHLAD 138
Query: 127 KVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ V LSGG+R+R A L + A++L DEPTT LD L+ ++ EL ++ T+
Sbjct: 139 QSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLA 198
Query: 185 CTIH 188
+H
Sbjct: 199 AVLH 202
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 48.2 bits (114), Expect = 2e-06
Identities = 48/191 (25%), Positives = 93/191 (48%), Gaps = 35/191 (18%)
Query: 15 LVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEGK------FRSACGFMY 66
+ A +G SG GKST L L+Q L + +G+I G K R+ G ++
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 67 QHDLFSP-SLTVYEHLYFMALLK--LDRRV------KAYQRIALINSLLIELGLMNSQHT 117
Q +P +++++++ + DR++ K+ + AL + + +L
Sbjct: 170 QKP--TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDL-------D 220
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
+ G++ LSGG+++RL A + +P +LL DEPT+ LD + +K+ ++ EL
Sbjct: 221 KAGNA-------LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL-- 271
Query: 178 QRKKTVLCTIH 188
++K +++ H
Sbjct: 272 KKKYSIIIVTH 282
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 47.9 bits (115), Expect = 2e-06
Identities = 54/161 (33%), Positives = 73/161 (45%), Gaps = 44/161 (27%)
Query: 17 AIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNGK-----------PVEGKFRSAC 62
AI G SGAGK++L ++ L++ P G I +NG+ P E K R
Sbjct: 28 AIFGRSGAGKTSLINAISGLTR--PQK----GRIVLNGRVLFDAEKGICLPPE-KRR--I 78
Query: 63 GFMYQ-HDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
G+++Q LF P V +L Y MA + Q ++ L IE L R
Sbjct: 79 GYVFQDARLF-PHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLL-----DRYP 126
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
S LSGGE++R++ LLT P LLL DEP LD
Sbjct: 127 GS-------LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 48.0 bits (115), Expect = 2e-06
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 47/161 (29%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFR----SACGFMYQ- 67
G +AI+G +G GK+TLL L L D G + + G+ Q
Sbjct: 345 GERLAIIGENGVGKTTLLRTLVGELEPD--------------SGTVKWSENANIGYYAQD 390
Query: 68 --HDLFSPSLTVYEHLYFMALLK----LDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
+D F LT+++ +M+ + ++ V+ LG +
Sbjct: 391 HAYD-FENDLTLFD---WMSQWRQEGDDEQAVRGT------------LGRL-----LFSQ 429
Query: 122 SSITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
I + V VLSGGE+ R+ F ++ P +L+ DEPT +D
Sbjct: 430 DDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
Score = 32.9 bits (76), Expect = 0.19
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 105 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
LL+ +G+ QH + S ++ G + R+ A L ++P +LL DEPT LD +
Sbjct: 138 LLLGVGIPEEQHYGLMSE-------VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT 190
Query: 165 ASKLIRMMRELTSQRKKTVLCTIH 188
IR + ++ ++R T++ H
Sbjct: 191 ----IRWLEDVLNERNSTMIIISH 210
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 47.5 bits (114), Expect = 3e-06
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 46/177 (25%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFM 65
G + ++G SG GKSTLL A L + I G+I + G+ V E R +
Sbjct: 29 DGEFIVLVGPSGCGKSTLLRMVAGLER------ITSGEIWIGGRVVNELEPADRD-IAMV 81
Query: 66 YQHDLFSPSLTVYEHLYFMAL-LK--------LDRRVKAYQRIALINSLLIELGLMNSQH 116
+Q+ P ++V E+ MA LK ++ RV RI +EL + +
Sbjct: 82 FQNYALYPHMSVREN---MAYGLKIRGMPKAEIEERVAEAARI-------LELEPLLDRK 131
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
R LSGG+R+R++ ++ +PA+ L DEP + LD +KL MR
Sbjct: 132 PR----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD----AKLRVQMR 174
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the
uptake of monosaccharides, such as pentoses (such as
xylose, arabinose, and ribose) and hexoses (such as
xylose, arabinose, and ribose), that cannot be broken
down to simple sugars by hydrolysis. Pentoses include
xylose, arabinose, and ribose. Important hexoses
include glucose, galactose, and fructose. In members of
the Carb_monos family, the single hydrophobic gene
product forms a homodimer while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter.
Length = 163
Score = 45.9 bits (110), Expect = 3e-06
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE 55
G + A++G +GAGKSTL+ LS D G+I V+GK V
Sbjct: 26 GEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVS 65
Score = 43.2 bits (103), Expect = 3e-05
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LS GER+ + A L + LL+ DEPT L +L +++R L +Q V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHR 141
Query: 190 PSSELIDMFDKIILLADSRTA 210
E+ ++ D++ +L D R
Sbjct: 142 L-DEVFEIADRVTVLRDGRVV 161
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 47.5 bits (113), Expect = 4e-06
Identities = 48/150 (32%), Positives = 67/150 (44%), Gaps = 31/150 (20%)
Query: 13 GTLVAIMGASGAGKST---LLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFM 65
G LV ++G +G+GKST LL L Q P G+I ++GKPV + +R
Sbjct: 349 GELVFLIGGNGSGKSTLAMLLTGLYQ--PQ----SGEILLDGKPVSAEQLEDYRK----- 397
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
LFS + Y HL F LL + LI L L L + G S
Sbjct: 398 ----LFSAVFSDY-HL-FDQLLGPE----GKASPQLIEKWLQRLELAHKTSLNDGRFSNL 447
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDE 155
+ LS G++KRL+ LL + +L+ DE
Sbjct: 448 K---LSTGQKKRLALLLALLEERDILVLDE 474
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 47.2 bits (112), Expect = 4e-06
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG+++R++ A L P +L+ DEPT GLD ++++++ + KTV H
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHT 235
Query: 190 PSSELIDMFDKIILLA 205
++++ D++I++
Sbjct: 236 -MEHVLEVADEVIVMD 250
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 47.8 bits (114), Expect = 4e-06
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 46/206 (22%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-----PVEGKFRSACGFMYQ 67
G+LVAI+G++G GK++L++A+ LP D + + G V F +
Sbjct: 643 GSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVIRGTVAYVPQVSWIFNA------- 693
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
TV +++ F + +R +A AL + L + L T IG +
Sbjct: 694 --------TVRDNILFGSPFDPERYERAIDVTALQHDLDL---LPGGDLTEIGE----RG 738
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA----SKLIRMMRELTSQRKKT- 182
V +SGG+++R+S A + ++ + + D+P + LD+ K I+ EL R KT
Sbjct: 739 VNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK--DEL---RGKTR 793
Query: 183 VLCT--IHQPSSELIDMFDKIILLAD 206
VL T +H + D+IIL+ +
Sbjct: 794 VLVTNQLH-----FLSQVDRIILVHE 814
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 46.6 bits (111), Expect = 5e-06
Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 30/233 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACG-FM-Y 66
G + AIMG +G+GKSTL ++ P I++GDI G+ + E + R+ G F+ +
Sbjct: 32 KGEIHAIMGPNGSGKSTLSKVIAGH-PAYKILEGDILFKGESILDLEPEERAHLGIFLAF 90
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG-SSSIT 125
Q+ + P ++ + L L + + K L L L ++N + +G S
Sbjct: 91 QYPIEIPGVSNADFL----RLAYNSKRKFQGLPEL--DPLEFLEIINEKLKLVGMDPSFL 144
Query: 126 QKVV---LSGGERKR---LSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQ 178
+ V SGGE+KR L A L D L + DE +GLD A K+I + +L +
Sbjct: 145 SRNVNEGFSGGEKKRNEILQMA---LLDSELAILDETDSGLD-IDALKIIAEGINKLMTS 200
Query: 179 RKKTVLCTIHQPSSELIDMF--DKIILLADSRTAFIGSKDAALAFLESQGYPC 229
+L T +Q L+D D + ++ + + G + A LE +GY
Sbjct: 201 ENSIILITHYQ---RLLDYIKPDYVHVMQNGKIIKTGDAELAKE-LEKKGYDW 249
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 46.5 bits (110), Expect = 5e-06
Identities = 48/209 (22%), Positives = 100/209 (47%), Gaps = 22/209 (10%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDC--IIDGD--IRVNGKPVE--GKFRSACGFMYQ- 67
+ ++G +G+GKST++ + + + I GD I N K ++ + R G ++Q
Sbjct: 39 VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQF 98
Query: 68 --HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+ LF T+ + + F + + + +AY+++ L++L + + +
Sbjct: 99 PEYQLFQE--TIEKDIAFGPVNLGENKQEAYKKVPE----LLKLVQLPEDYVK------R 146
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGG+++R++ A + D L+ DEPT GLD I + L + KK ++
Sbjct: 147 SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIM 206
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGS 214
H +++ + D++I++ + + IGS
Sbjct: 207 VTHN-MDQVLRIADEVIVMHEGKVISIGS 234
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 46.3 bits (110), Expect = 6e-06
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 27/176 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAAL-SQRLPDDCIIDGDIRV----------NGKP--VEGKF 58
+G V + G SG+GKSTLL +L + LPD+ G I V +P V
Sbjct: 36 AGECVVLHGPSGSGKSTLLRSLYANYLPDE----GQILVRHEGEWVDLVTAEPREVLEVR 91
Query: 59 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
R+ G++ Q P ++ + + L + R A + A LL L L R
Sbjct: 92 RTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAA---DLLTRLNLPE----R 144
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
+ S + SGGE++R++ A + D +LL DEPT LD+ + + ++ ++RE
Sbjct: 145 LWSLAPA---TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 46.9 bits (111), Expect = 6e-06
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 22/198 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAAL-SQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G +V I+G +G GKSTL +P +G+I ++G V R DL
Sbjct: 367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQ----EGEILLDGAAVSADSRDD-----YRDL 417
Query: 71 FSPSLTVYEHLY-FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
FS ++ + F L+ D A A L L + + G S T
Sbjct: 418 FS---AIFADFHLFDDLIGPDEGEHASLDNA--QQYLQRLEIADKVKIEDGGFSTT--TA 470
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLD-SFSASKLIRMMRELTSQRKKTVLCTIH 188
LS G++KRL+ L D +LL DE D +F ++ +L ++ KT++ H
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDL-KRQGKTIIIISH 529
Query: 189 QPSSELIDMFDKIILLAD 206
+ ++ D+II LA
Sbjct: 530 --DDQYFELADQIIKLAA 545
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 46.4 bits (110), Expect = 7e-06
Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 46/249 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--CGFMYQHDL 70
G ++AI G++G+GK++LL +I G++ +P EGK + + F Q
Sbjct: 63 GEMLAITGSTGSGKTSLLM----------LILGEL----EPSEGKIKHSGRISFSSQFSW 108
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE---LGLMNSQHTRIGSSSITQK 127
P T+ E++ F + D Y+ +++ + +E +T +G IT
Sbjct: 109 IMPG-TIKENIIFG--VSYDE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGIT-- 159
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 160 --LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVT- 216
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 247
E + DKI++L + + F G+ F E Q DF K + T
Sbjct: 217 --SKMEHLKKADKILILHEGSSYFYGT------FSELQS-------LRPDFSSKLMGYDT 261
Query: 248 NDELSSRRR 256
D+ S+ RR
Sbjct: 262 FDQFSAERR 270
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 46.3 bits (109), Expect = 7e-06
Identities = 73/275 (26%), Positives = 119/275 (43%), Gaps = 45/275 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIID-GDIRVNG-------KPVEGKFRSACG 63
G+ A++G +G+GKSTLL L+ L P + + GDI V+ KPV R G
Sbjct: 32 GSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPV----RKKVG 87
Query: 64 FMYQ---HDLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
++Q LF TV + + F + K A +++ ++ GL
Sbjct: 88 VVFQFPESQLFEE--TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMV-------GL----- 133
Query: 117 TRIGSSSITQK--VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
+ +K LSGG+ +R++ A L +P +L+ DEPT GLD + +++++ E
Sbjct: 134 ----ADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLF-E 188
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCPY 231
Q +TV+ H ++ D D + LL G+ FL++ P
Sbjct: 189 SIHQSGQTVVLVTHL-MDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPK 247
Query: 232 GYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSV 266
+ AD L K+ AVT +R L + SV
Sbjct: 248 ATHFADQLQKTGAVTFEKLPITRAELVTLLTSLSV 282
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 46.4 bits (110), Expect = 1e-05
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 36/161 (22%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-FRSA---CGFMYQHDLF 71
+A++G +G GKST+L +I G++ +P G FRSA QH +
Sbjct: 538 IAMVGPNGIGKSTILK----------LISGEL----QPSSGTVFRSAKVRMAVFSQHHVD 583
Query: 72 SPSLTVYEHLYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
L+ LY M +++++A+ L G+ G+ ++
Sbjct: 584 GLDLSSNPLLYMMRCFPGVPEQKLRAH---------LGSFGVT-------GNLALQPMYT 627
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170
LSGG++ R++FA P +LL DEP+ LD + LI+
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ 668
Score = 37.5 bits (87), Expect = 0.006
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLD 161
SGG R R++ A L +P LLL DEPT LD
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 46.2 bits (110), Expect = 1e-05
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LS GE ++ L+++P LL+ DEP GLD S +L ++ L + L +
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL--HQSGITLVLVLN 193
Query: 190 PSSELIDMFDKIILLADSRTAFIGSKDAALA 220
E+ D +LAD A G ++ L
Sbjct: 194 RFDEIPDFVQFAGVLADCTLAETGEREEILQ 224
Score = 30.0 bits (68), Expect = 1.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 17 AIMGASGAGKSTLLAALSQRLP 38
A +GA+G+GKS L AL+ LP
Sbjct: 33 AFVGANGSGKSALARALAGELP 54
Score = 29.6 bits (67), Expect = 1.9
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 45/166 (27%)
Query: 18 IMGASGAGKSTLLAALS----QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSP 73
I+G +GAGKSTLL+ ++ Q +D + G R +G+
Sbjct: 291 IVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGE--------------------- 329
Query: 74 SLTVYE---HL-YFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQH-------TR 118
T+++ H+ Y + L LD RV R +++ +G+ + Q
Sbjct: 330 --TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDI 387
Query: 119 IGSSSITQKV---VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
+G T LS G+++ L+ P LL+ DEP GLD
Sbjct: 388 LGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 44.9 bits (107), Expect = 1e-05
Identities = 60/222 (27%), Positives = 86/222 (38%), Gaps = 68/222 (30%)
Query: 15 LVAIMGASGAGKSTL----LAALSQR------------------LPDDCIIDG---DIRV 49
LV I G SG+GKS+L + A QR PD I+G I +
Sbjct: 23 LVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82
Query: 50 NGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL--LI 107
+ K RS G TV E ++ LL + R+ + L L+
Sbjct: 83 DQKTTSRNPRSTVG------------TVTEIYDYLRLL--------FARVGIRERLGFLV 122
Query: 108 ELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFS 164
++GL + + S+ T LSGGE +R+ AT++ LT L + DEP+ GL
Sbjct: 123 DVGL---GYLTLSRSAPT----LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHPRD 174
Query: 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206
+LI ++ L TVL H I AD
Sbjct: 175 NDRLIETLKRLRDL-GNTVLVVEHDE---------DTIRAAD 206
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 45.7 bits (109), Expect = 1e-05
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
LSGGER+RL+ A LL DP +L+ DE T+ LD + +K+ + EL R
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGR 521
Score = 38.0 bits (89), Expect = 0.005
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPD----DCIIDG-DIR 48
A G VAI+G +GAGKSTL+ L QR+ D +IDG DIR
Sbjct: 357 EAKPGQTVAIVGPTGAGKSTLINLL-QRVFDPQSGRILIDGTDIR 400
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 45.5 bits (108), Expect = 1e-05
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 24/166 (14%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
GT+V ++G SG GK+T+L A L + IDG+ V + ++ R C +
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE-DVTHRSIQQ--RDICMVFQSYA 88
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL-LIELGLMNSQHTRIGSSSITQKV 128
LF P +++ E++ + LK+ K ++ + +L L++L ++ + Q
Sbjct: 89 LF-PHMSLGENVGYG--LKMLGVPKEERKQRVKEALELVDLAGFEDRY-------VDQ-- 136
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
+SGG+++R++ A L+ P +LL DEP + LD + L R MRE
Sbjct: 137 -ISGGQQQRVALARALILKPKVLLFDEPLSNLD----ANLRRSMRE 177
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 45.1 bits (107), Expect = 2e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+++R++ A L +P L+ DEPT GLD +++ + L Q K +L T
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVT 222
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 46.0 bits (109), Expect = 2e-05
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 130 LSGGERKRLSFATELLT---DPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
LSGGE +RL A ELL P L + DEPTTGL + LI +++ LT Q
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ 861
Score = 36.7 bits (85), Expect = 0.015
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 104 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGL 160
S+LI+LGL R ++ LSGGE++R + A L L +L DEP+ GL
Sbjct: 458 SILIDLGLPYLTPERALAT-------LSGGEQERTALAKHLGAELIGITYIL-DEPSIGL 509
Query: 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 202
KLI ++++L Q TVL H ++I + D+II
Sbjct: 510 HPQDTHKLINVIKKLRDQ-GNTVLLVEHD--EQMISLADRII 548
Score = 27.5 bits (61), Expect = 9.9
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 77 VYEHLYFMALLKLDRRVKAYQRIALINSLL--IELGLMNSQHTRIGSSSITQKVV-LSGG 133
VYE +F LL+ + +A L I+ L +G + Q + LS
Sbjct: 1649 VYEGKHFGQLLQ-----TPIEEVAETFPFLKKIQKPLQALIDNGLGYLPLGQNLSSLSLS 1703
Query: 134 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
E+ + A L P L L DE T LD+ S L+ +R L S
Sbjct: 1704 EKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL 1751
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 44.6 bits (105), Expect = 2e-05
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 33/206 (16%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACG 63
L+ + + ++G ++GA+G GKSTL LS L G + GKP++ R
Sbjct: 22 LDFSLSPVTG----LVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLA 74
Query: 64 FMYQHDLFSPSLTVYE----HLYFMAL---LKLDRRVKAYQRIALINSLLIELGLMNSQH 116
Q TV++ +++ + + R + + L L+++QH
Sbjct: 75 LRQQ------VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH 128
Query: 117 TRIGSSSITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
R Q + LS G++KR++ A L+ LL DEPT GLD +++I ++R +
Sbjct: 129 FR------HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI 182
Query: 176 TSQRKKTVLCTIHQPSSELIDMFDKI 201
+Q ++ SS ID+ +I
Sbjct: 183 VAQGNHVII------SSHDIDLIYEI 202
>gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons
confer the ability to use somewhat different profiles
of C-P bond-containing compounds (see PMID:15231805),
including phosphites as well as phosphonates. PhnN in
E. coli shows considerable homology to guanylate
kinases (EC 2.7.4.8), and has actually been shown to
act as a ribose 1,5-bisphosphokinase (PRPP forming).
This suggests an analogous kinase reaction for
phosphonate metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP [Central intermediary metabolism,
Phosphorus compounds].
Length = 179
Score = 43.5 bits (103), Expect = 2e-05
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD 40
G L+ ++G SGAGK TLL RL D
Sbjct: 1 GRLIYVVGPSGAGKDTLLDYARARLAGD 28
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 44.9 bits (107), Expect = 3e-05
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 33/168 (19%)
Query: 16 VAIMGASGAGKSTLLAALSQRLP-DD--CIIDGDIRVN------GKPVEGKFRS--ACGF 64
V ++G +GAGKSTL+ L+ + DD I + D+ V + VEG A G
Sbjct: 32 VCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGI 91
Query: 65 MYQ-------HDLFSPSLTVY--EHLYFMALL--KLDRRVKAYQRIALINSLLIELGLMN 113
Q HD+ T ++L +A L +LD +Q IN +L +LGL
Sbjct: 92 EEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHH-NLWQLENRINEVLAQLGL-- 148
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
+ S LSGG ++ + L+++P +LL DEPT LD
Sbjct: 149 DPDAALSS--------LSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 38.8 bits (91), Expect = 0.003
Identities = 18/32 (56%), Positives = 19/32 (59%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGGER RL A L LL+ DEPT LD
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 44.0 bits (104), Expect = 3e-05
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 40/193 (20%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTL------LAALSQRLPDDCIIDGDIRVNGKPV-- 54
LT +LS G V ++G SG GKSTL L +Q G + G+ +
Sbjct: 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ---------GTVSFRGQDLYQ 77
Query: 55 -----EGKFRSACGFMYQ--HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLI 107
FR ++Q +P +TV + + L+ + ++ A I LL
Sbjct: 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLD 135
Query: 108 ELGLMNSQHTRIGSSSITQKV--VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165
+GL S K+ LSGG+ +R++ A L P L++ DE + LD
Sbjct: 136 MVGL---------RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQ 186
Query: 166 SKLIRMMRELTSQ 178
+ ++ ++R+L
Sbjct: 187 AVILELLRKLQQA 199
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 44.7 bits (107), Expect = 3e-05
Identities = 50/159 (31%), Positives = 71/159 (44%), Gaps = 41/159 (25%)
Query: 13 GTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQ-HDL 70
G +V I+G +GAGKSTL ++ Q PD G I++ G+ V+ ++ Q D
Sbjct: 350 GGIVGIIGPNGAGKSTLFKMITGQEQPDS----GTIKI-GETVK------LAYVDQSRDA 398
Query: 71 FSPSLTVYEH----LYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 122
P+ TV+E L + + + +AY +G N Q ++G
Sbjct: 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAY------------VGRFNFKGGDQQKKVG-- 444
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
VLSGGER RL A L +LL DEPT LD
Sbjct: 445 ------VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
Score = 43.6 bits (104), Expect = 7e-05
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGGER+R++ LL P +LL DEPT LD
Sbjct: 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 44.1 bits (104), Expect = 4e-05
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 31/181 (17%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGK-------PVEGKFRSA 61
+ AI+G SG GKST + L++ L G I + VE + R+
Sbjct: 48 HENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE-ELRTN 106
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLK-------LDRRVKAYQRIALINSLLIELGLMNS 114
G ++Q P ++Y+++ + + LD V+ R A I L + N+
Sbjct: 107 VGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA 165
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
LSGG+++RL A L +P ++L DEPT+ LD S K+ +++E
Sbjct: 166 YG-------------LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212
Query: 175 L 175
L
Sbjct: 213 L 213
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 44.8 bits (106), Expect = 4e-05
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 36/155 (23%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA----CGFMYQH 68
G+ + ++G +GAGKSTL+ L+ L PV G+ A G+ QH
Sbjct: 338 GSRIGLLGRNGAGKSTLIKLLAGEL--------------APVSGEIGLAKGIKLGYFAQH 383
Query: 69 DL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
L + +HL +A +L+++++ Y LG Q ++ + T+
Sbjct: 384 QLEFLRADESPLQHLARLAPQELEQKLRDY------------LGGFGFQGDKV--TEETR 429
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
+ SGGE+ RL A + P LLL DEPT LD
Sbjct: 430 R--FSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
Score = 39.8 bits (93), Expect = 0.001
Identities = 26/58 (44%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 104 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
SLL LG N Q R S SGG R RL+ A L+ LLL DEPT LD
Sbjct: 131 SLLHGLGFSNEQLERPVSD-------FSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 43.4 bits (103), Expect = 5e-05
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 48/203 (23%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI------IDGDIRVNGKPVEGKFRSACGFM- 65
+V+++G +GAGK+T+ +C+ G I + G+ +EG M
Sbjct: 31 QEIVSLIGPNGAGKTTVF---------NCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81
Query: 66 ----YQH-DLFSPSLTVYEHL-----------YFMALLKLD--RRV--KAYQRIALINSL 105
+QH LF +TV E+L F LLK RR +A R A +
Sbjct: 82 VVRTFQHVRLFR-EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAA---TW 137
Query: 106 LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165
L +GL+ + + G+ L+ G+++RL A ++T P +L+ DEP GL+
Sbjct: 138 LERVGLLEHANRQAGN--------LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKET 189
Query: 166 SKLIRMMRELTSQRKKTVLCTIH 188
+L ++ EL ++ TVL H
Sbjct: 190 KELDELIAELRNEHNVTVLLIEH 212
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 43.3 bits (102), Expect = 8e-05
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
A +G VAI+G +GAGK+TL+ L QR+ D + G I ++G + R +
Sbjct: 358 AKAGQTVAIVGPTGAGKTTLINLL-QRVYDPTV--GQILIDGIDINTVTRES-------- 406
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV- 128
L TV++ +R ++ R+ + E+ + I ++
Sbjct: 407 LRKSIATVFQDAGLF-----NRSIRENIRLGREGATDEEV--YEAAKAAAAHDFILKRSN 459
Query: 129 -----------VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGGER+RL+ A +L + +L+ DE T+ LD
Sbjct: 460 GYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 43.0 bits (102), Expect = 1e-04
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 13 GTLVAIMGASGAGKST---LLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G L+ ++G +G+GKST LL L Q P G+I ++GKPV + Y+
Sbjct: 349 GELLFLIGGNGSGKSTLAMLLTGLYQ--P----QSGEILLDGKPVTAEQPED----YRK- 397
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
LFS T + HL F LL + + AL+ L L + + G S +
Sbjct: 398 LFSAVFTDF-HL-FDQLLGPEGKPAN---PALVEKWLERLKMAHKLELEDGRISNLK--- 449
Query: 130 LSGGERKRLSFATELLTDPALLLCDE 155
LS G++KRL+ L + +LL DE
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDE 475
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 43.3 bits (102), Expect = 1e-04
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG R+R+ A L PA+L+ DEPTT LD ++++++++ L + V+ H
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228
Query: 190 PSSELIDMFDKIILLADSRTAFIGS 214
+ ++ D+++++ GS
Sbjct: 229 -MGVVAEIADRVLVMYQGEAVETGS 252
Score = 37.5 bits (87), Expect = 0.007
Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 31/180 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G ++++G SG+GKST AL RL + G+I NG+ ++ R F+
Sbjct: 350 GETLSLVGESGSGKSTTGRAL-LRLVES--QGGEIIFNGQRIDTLSPGKLQALRRDIQFI 406
Query: 66 YQHDLFS--PSLTV----YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
+Q S P TV E L LL A R+A LL +GL+ R
Sbjct: 407 FQDPYASLDPRQTVGDSIMEPLRVHGLLPGK---AAAARVAW---LLERVGLLPEHAWRY 460
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
SGG+R+R+ A L +P +++ DE + LD ++I ++ +L QR
Sbjct: 461 PHE-------FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL--QR 511
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 42.4 bits (100), Expect = 1e-04
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+++R++ A L +P++++ DE T+ LD + L+ ++R++ S+ T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 41.9 bits (99), Expect = 2e-04
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 33/188 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQH 68
G VAI+G +G+GKSTL L+ L + G I V G + + R G ++Q+
Sbjct: 33 GEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQN 89
Query: 69 --DLFSPSLTVYEHLYF------MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
+ F + TV + + F + ++ RV Q + + M R
Sbjct: 90 PDNQFVGA-TVQDDVAFGLENIGVPREEMVERVD--QALRQVG--------MEDFLNREP 138
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG+++R++ A L P +++ DE T+ LD +++ +R+L Q+
Sbjct: 139 HR-------LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKG 191
Query: 181 KTVLCTIH 188
TVL H
Sbjct: 192 ITVLSITH 199
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 42.1 bits (99), Expect = 2e-04
Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 24/228 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK---PVEGKFRSACG-FM-Y 66
G + AIMG +G+GKSTL A L+ R D + G + GK + + R+ G FM +
Sbjct: 26 PGEVHAIMGPNGSGKSTLSATLAGR-EDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF 84
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL----LIE--LGLMNSQHTRIG 120
Q+ + P V + L V++Y+ ++ L+E + L+ +
Sbjct: 85 QYPVEIPG--VSNQFFLQTALN---AVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLT 139
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
S V SGGE+KR + +P L + DE +GLD + + + L ++
Sbjct: 140 RSV---NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKR 196
Query: 181 KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF-LESQGY 227
++ T +Q + I D + +L R + S D L LE QGY
Sbjct: 197 SFIIVTHYQRILDYIKP-DYVHVLYQGR--IVKSGDFTLVKQLEEQGY 241
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 41.5 bits (97), Expect = 2e-04
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 20/187 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
+G L I+G G GKS+LL A+ L + ++G + + K A ++ +
Sbjct: 26 TGQLTMIVGQVGCGKSSLLLAI---LGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVA 82
Query: 72 SPS-------LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSS 123
+ TV E++ F + R Y+ + SL ++ L+ T IG
Sbjct: 83 YAAQKPWLLNATVEENITFGSPFNKQR----YKAVTDACSLQPDIDLLPFGDQTEIGERG 138
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKT 182
I LSGG+R+R+ A L + ++ D+P + LD + L++ + + K+T
Sbjct: 139 IN----LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRT 194
Query: 183 VLCTIHQ 189
++ H+
Sbjct: 195 LVLVTHK 201
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 41.3 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+ +R++ A L +P +L+ DEPT GLD +L+ + ++L VL T
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 40.9 bits (96), Expect = 3e-04
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
QK LSGGE +R+ A LL P LL+ DEPT G+D
Sbjct: 119 QK--LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 41.3 bits (97), Expect = 3e-04
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG +R+ A + P LL+ DEPTT LD +++I ++ EL Q+K+
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL--QQKE 203
>gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 40.4 bits (95), Expect = 3e-04
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD 40
G L+A++G SGAGK TLL A RL
Sbjct: 5 GRLIAVVGPSGAGKDTLLDAARARLAGR 32
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 39.2 bits (91), Expect = 4e-04
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI-IDGDIRVNG 51
++ I G G+GKSTL L+++L I +D +R G
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEG 38
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 39.9 bits (94), Expect = 5e-04
Identities = 46/197 (23%), Positives = 71/197 (36%), Gaps = 36/197 (18%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPS 74
L I+G +GAGK+T++ AL L G++ N K G +
Sbjct: 24 LTLIVGQNGAGKTTIIEALKYAL------TGELPPNSKG---------GAHDPKLIREGE 68
Query: 75 LTVYEHLYFMALLKLDRRVKAYQRIALI-NSLLIELGLMNSQHTR-IGSSSITQKVVLSG 132
+ L F ++ + +A++ N + G N G SG
Sbjct: 69 VRAQVKLAFE--NANGKKYTITRSLAILENVIFCHQGESNWPLLDMRGR--------CSG 118
Query: 133 GERKRLSFA-----TELLTDPA-LLLCDEPTTGLDSFS-ASKLIRMMRELTSQRKKTVLC 185
GE+ S E +L DEPTT LD + L ++ E SQ+ ++
Sbjct: 119 GEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIV 178
Query: 186 TIHQPSSELIDMFDKII 202
H EL+D D I
Sbjct: 179 ITHDE--ELVDAADHIY 193
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 39.7 bits (94), Expect = 6e-04
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR 48
L G ++G SG GKSTLL AL LP+ + G+I
Sbjct: 81 ELLKGKTSVLVGQSGVGKSTLLNAL---LPELVLATGEIS 117
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 39.2 bits (92), Expect = 7e-04
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 16 VAIMGASGAGKSTLLAALSQRLP 38
+ I+G GAGKSTL L+++L
Sbjct: 3 ILILGPPGAGKSTLAKKLAKKLG 25
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 40.2 bits (94), Expect = 7e-04
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
L+ GE +++ A L P LL+ DEPT ++ + +++ R++ L T+L H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 40.0 bits (93), Expect = 8e-04
Identities = 52/216 (24%), Positives = 98/216 (45%), Gaps = 27/216 (12%)
Query: 13 GTLVAIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH- 68
G + I+G +G+GKSTL L L + ++ G + ++G R G ++Q+
Sbjct: 28 GEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG-IRKLVGIVFQNP 86
Query: 69 DLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ TV E L F + L ++ R ++ L E+GL +H +
Sbjct: 87 ETQFVGRTVEEDLAFGPENLCLPPIEIR-------KRVDRALAEIGLEKYRHRSPKT--- 136
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+ + ++ A L +P L+ DE T+ LD S ++ +++L ++ KT++
Sbjct: 137 -----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIV 190
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H + E + D+II++ + G + L+
Sbjct: 191 YITH--NLEELHDADRIIVMDRGKIVLEGEPENVLS 224
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 39.7 bits (93), Expect = 0.001
Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 38/184 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G + ++G SG GKST A+ + DG++ GK + G RS +
Sbjct: 47 GETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMI 103
Query: 66 YQHDLFS--PSLTVYE------HLYFMALLKLD--RRVKAYQRIALINSLLIELGLMNSQ 115
+Q L S P +T+ E Y L + + RVKA +++++GL+ +
Sbjct: 104 FQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKA---------MMLKVGLLPNL 154
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
R SGG+ +R+ A L+ +P L++CDEP + LD ++++ ++++L
Sbjct: 155 INRYPHE-------FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207
Query: 176 TSQR 179
QR
Sbjct: 208 --QR 209
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 39.3 bits (93), Expect = 0.002
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRE 174
++G + T LSGGE +R+ A EL T L + DEPTTGL KL+ ++
Sbjct: 823 KLGQPATT----LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHR 878
Query: 175 LTSQ 178
L +
Sbjct: 879 LVDK 882
Score = 35.0 bits (82), Expect = 0.045
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRL 37
G + G SG+GKSTL+ AL+++L
Sbjct: 635 GKFTCVTGVSGSGKSTLINETLYKALARKL 664
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 38.8 bits (91), Expect = 0.002
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLD-SFSASKLIRMM 172
SGG+R+R++ A L+ DP +++ DEP + LD S A L MM
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMM 198
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 38.0 bits (88), Expect = 0.002
Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 37/188 (19%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE---GKFRSACGFMYQH 68
+G L+ + G++GAGK+TLL ++ L + G+I + ++ ++ F+
Sbjct: 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQKQLCFVGHR 82
Query: 69 DLFSPSLTVYEHLYF-----MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+P LT+ E+ + + + + + LI+ GL
Sbjct: 83 SGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID---YPCGL------------ 127
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK-- 181
LS G++++++ ++ L L DEP LD S L+ ++ ++ R K
Sbjct: 128 ------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS---LLTIITKIQEHRAKGG 178
Query: 182 TVLCTIHQ 189
VL T HQ
Sbjct: 179 AVLLTSHQ 186
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 39.0 bits (91), Expect = 0.003
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE-- 174
T IG + LSGG++ R+S A + + + L D+P + LD+ R++ E
Sbjct: 774 TEIGEKGVN----LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE---RVVEECF 826
Query: 175 LTSQRKKT-VLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
L + KT VL T HQ ++ D ++ L D R F GS
Sbjct: 827 LGALAGKTRVLAT-HQ--VHVVPRADYVVALGDGRVEFSGS 864
Score = 37.1 bits (86), Expect = 0.012
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54
V I+G +G+GKSTLL R+ + C G+IRVNG+ +
Sbjct: 1339 VGIVGRTGSGKSTLLLTF-MRMVEVC--GGEIRVNGREI 1374
Score = 31.3 bits (71), Expect = 0.69
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 13 GTLVAIMGASGAGKSTLLAAL 33
G L ++GA+G+GKSTLL +L
Sbjct: 686 GKLTVVLGATGSGKSTLLQSL 706
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 37.8 bits (87), Expect = 0.003
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 130 LSGGERKRLSFATELLTD---PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
+S G ++ L+ LL+ +LLL DEP GL KL+ +++EL S++ ++ T
Sbjct: 190 ISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKEL-SEKGAQLIFT 248
Query: 187 IHQPSSELID 196
H S L+D
Sbjct: 249 TH--SPLLLD 256
Score = 33.6 bits (76), Expect = 0.082
Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 7/192 (3%)
Query: 15 LVAIMGASGAGKSTLLAAL---SQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
L I+G +G+GKS LL AL L +D + V K + + F
Sbjct: 1 LNVIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDE--NEIEIPLEF 58
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
+ + + + +LD+ + L E L + ++ +K
Sbjct: 59 EIEEFLIDGIRYRYGFELDK--EDILEELLYEYRKGEELLFERERSKESFEKSPEKKREL 116
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
G R+ L L+ LL E + + L + + K L
Sbjct: 117 RGLREVLLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLE 176
Query: 192 SELIDMFDKIIL 203
S+L+ + +I
Sbjct: 177 SDLLRLLKLLIK 188
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 37.6 bits (88), Expect = 0.003
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDC 41
T+V I G GAGKSTL L L D
Sbjct: 34 TIVGIAGPPGAGKSTLAEFLEALLQQDG 61
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 37.9 bits (88), Expect = 0.004
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG-----KPVEGKFRSACGFMY 66
G V ++G +G+GKSTLL+A + L +GDI+++G P++ K+R A G +
Sbjct: 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGDIQIDGVSWNSVPLQ-KWRKAFGVIP 83
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSI 124
Q +F S T ++L + K + + L +IE G ++ G
Sbjct: 84 Q-KVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGL--KSVIEQFPGQLDFVLVDGG---- 136
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
VLS G ++ + A +L+ +LL DEP+ LD + + + +++
Sbjct: 137 ---CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQ 183
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 36.5 bits (85), Expect = 0.005
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI-IDGD 46
++ +MG SG+GKST+ AL++RL IDGD
Sbjct: 1 IIVVMGVSGSGKSTVGKALAERLG--APFIDGD 31
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 37.4 bits (87), Expect = 0.005
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+++R++ A + P +++ DE T+ LD +LI+ ++ + + TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH 199
>gnl|CDD|168472 PRK06217, PRK06217, hypothetical protein; Validated.
Length = 183
Score = 36.6 bits (85), Expect = 0.006
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 18 IMGASGAGKSTLLAALSQRLP 38
I GASG+G +TL AAL++RL
Sbjct: 6 ITGASGSGTTTLGAALAERLD 26
>gnl|CDD|236648 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.
Length = 186
Score = 36.3 bits (84), Expect = 0.007
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLP 38
G L+ +MG SG+GK +LLAAL QR
Sbjct: 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 36.0 bits (84), Expect = 0.007
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
+ I G GK+TLL AL+ R
Sbjct: 2 IVITGGPSTGKTTLLEALAAR 22
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 37.4 bits (87), Expect = 0.009
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 130 LSGGERKRLSFATEL-LTD--------PALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGGER S A L L+D L L DEP LD KL ++ EL S +
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFL-DEPFGTLDEERLEKLAEILEELLSDGR 874
Query: 181 KTVLCTIHQPSSELIDMFDKIILL 204
+ ++ + + EL + D I +
Sbjct: 875 QIIIISHVE---ELKERADVRIRV 895
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 36.0 bits (84), Expect = 0.009
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 13 GTLVAIMGASGAGKSTLLAAL 33
G L+ + G SG GKSTL+ AL
Sbjct: 4 GLLIVLSGPSGVGKSTLVKAL 24
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 33.3 bits (77), Expect = 0.011
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 10 ALSGTLVAIMGASGAGKSTLLAALS 34
GTL+ G SG+GKSTL+ A+
Sbjct: 20 DPKGTLLT--GPSGSGKSTLIDAIQ 42
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 36.3 bits (84), Expect = 0.013
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH- 188
L+ GE +++ A L P LL+ DEPT ++ + +++ R++ L T+L H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
Query: 189 -QPSSELID 196
Q S+ D
Sbjct: 219 LQMLSQWAD 227
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 34.8 bits (81), Expect = 0.014
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD 40
L+ + G SG GKSTLL L + +
Sbjct: 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 35.0 bits (80), Expect = 0.014
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDD----CIIDGDI 47
G ++ I+G G+GK+TL AL++ L IDG+
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40
Score = 33.9 bits (77), Expect = 0.037
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR-----ELTSQRKK 181
K SG R RL+ A P +L+ DE T+ LD+ + L+ + L S++
Sbjct: 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNL 117
Query: 182 TVLCTIHQP----SSELIDMFDKIILL 204
TV+ T + + L FD+ I+L
Sbjct: 118 TVILTTNDEKDLGPALLRRRFDRRIVL 144
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 36.0 bits (83), Expect = 0.018
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 38/181 (20%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSAC 62
G+ VA++G +G+GKSTL+ + L G I + G + K R
Sbjct: 31 EEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKV 87
Query: 63 GFMYQ---HDLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
++Q LF TV + + F + + + KA + + ++GL
Sbjct: 88 SLVFQFPEAQLFEN--TVLKDVEFGPKNFGFSEDEAKEKALKWLK-------KVGL---- 134
Query: 116 HTRIGSSSITQK--VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
S + K LSGG+ +R++ A + +P +L DEP GLD +++++ +
Sbjct: 135 -----SEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFK 189
Query: 174 E 174
+
Sbjct: 190 D 190
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 34.8 bits (81), Expect = 0.022
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRL 37
L G + G SG GKSTLL AL L
Sbjct: 31 PLLKGKTSVLAGQSGVGKSTLLNALLPEL 59
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 35.0 bits (81), Expect = 0.028
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGGE +R++ A L D DEP++ LD R++REL ++ VL H
Sbjct: 140 LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL-AEDDNYVLVVEHD 198
Query: 190 PSSELIDMFDKII 202
+ ++D I
Sbjct: 199 LA--VLDYLSDYI 209
>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction
only].
Length = 168
Score = 34.4 bits (79), Expect = 0.031
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRS 60
LV + GASG+GKST A L + + D+R+ K S
Sbjct: 3 ILVVLRGASGSGKSTF--AKENFLQNYVLSLDDLRLLLGVSASKENS 47
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 35.3 bits (82), Expect = 0.031
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR 48
L G VA++G+SG GKSTL+ AL L ++ G +R
Sbjct: 187 VLAAWLSGGKTVALLGSSGVGKSTLVNAL---LGEEVQKTGAVR 227
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 32.3 bits (74), Expect = 0.033
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD--------CIIDGDIRVN 50
++AI G SG+GKST+ L+++L I++G
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDEIVILEGLYASY 44
>gnl|CDD|217188 pfam02689, Herpes_Helicase, Helicase. This family consists of
Helicases from the Herpes viruses. Helicases are
responsible for the unwinding of DNA and are essential
for replication and completion of the viral life cycle.
Length = 801
Score = 35.4 bits (82), Expect = 0.037
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDIRV 49
I G +GAGKST + L++ L DC+I G RV
Sbjct: 64 ITGTAGAGKSTSIQTLNENL--DCLITGATRV 93
>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like
protein)-like YfjP subfamily includes several
uncharacterized bacterial GTPases that are similar to
Era. They generally show sequence conservation in the
region between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. Era is
characterized by a distinct derivative of the KH domain
(the pseudo-KH domain) which is located C-terminal to
the GTPase domain.
Length = 140
Score = 33.9 bits (78), Expect = 0.038
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 17 AIMGASGAGKSTLLAALSQ 35
+MG +GAGKS+L AL
Sbjct: 1 GLMGKTGAGKSSLCNALFG 19
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 34.0 bits (79), Expect = 0.048
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCI 42
++ I G SG+GK+T+ + + + L D+ I
Sbjct: 7 IIIGIAGGSGSGKTTVASTIYEELGDESI 35
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 34.6 bits (80), Expect = 0.049
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG 51
L+G + ++G SG GKSTL+ AL LP+ G+I
Sbjct: 160 ELLAGKITVLLGQSGVGKSTLINAL---LPELNQKTGEISEKL 199
>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme
involved in the metabolism of nicotinamide adenine
dinucleotide (NAD+). This enzyme catalyzes the
phosphorylation of nicotinamide riboside (NR) to form
nicotinamide mononucleotide (NMN). It defines the NR
salvage pathway of NAD+ biosynthesis in addition to the
pathways through nicotinic acid mononucleotide (NaMN).
This enzyme can also phosphorylate the anticancer drug
tiazofurin, which is an analog of nicotinamide
riboside.
Length = 187
Score = 33.8 bits (78), Expect = 0.051
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCII 43
+V I G + +GK+TL L + LP+ C+I
Sbjct: 1 IVGISGVTNSGKTTLAKLLQRILPNCCVI 29
>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 34.5 bits (80), Expect = 0.051
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 13/53 (24%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR-------LP----DDCIIDGDIRVNGKPV 54
G V I+G GKS+LL AL R + D +I+ DI +NG PV
Sbjct: 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRD--VIEEDINLNGIPV 267
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 33.9 bits (79), Expect = 0.058
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPD 39
G L+ + G SGAGKSTL+ AL +R P+
Sbjct: 5 GLLIVLSGPSGAGKSTLVKALLERDPN 31
>gnl|CDD|223040 PHA03311, PHA03311, helicase-primase subunit BBLF4; Provisional.
Length = 782
Score = 34.5 bits (80), Expect = 0.060
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDIRV 49
I G +GAGKST + L++ L DC+I G RV
Sbjct: 76 ITGTAGAGKSTSIQTLNENL--DCVITGATRV 105
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 33.9 bits (78), Expect = 0.064
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+++R++ A L P ++ DEPT LD +++ ++EL + T++ H
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
>gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 33.2 bits (76), Expect = 0.083
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 2 TELELTGAALSG---TLVAIMGASGAGKSTLLAALSQRL 37
+ L A L G V I G SG+GK+TL AL+ R
Sbjct: 1 MLVALIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The
full-length GTPase protein is required for the complete
activity of the protein of interacting with the 50S
ribosome and binding of both adenine and guanine
nucleotides, with a preference for guanine nucleotide.
Length = 117
Score = 32.3 bits (74), Expect = 0.086
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
VA++G GKSTL+ AL+
Sbjct: 2 VALVGRPNVGKSTLINALTGA 22
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a
wide variety of presumed DNA repair proteins.
Length = 154
Score = 32.6 bits (75), Expect = 0.096
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 13 GTLVAIMGASGAGKSTLLAAL 33
G L + GA G GKSTL L
Sbjct: 33 GGLTLLAGAPGTGKSTLALDL 53
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and
metabolism].
Length = 218
Score = 33.4 bits (77), Expect = 0.097
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPD 39
++ I G SG+GK+T+ LS++L
Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGV 34
>gnl|CDD|238899 cd01918, HprK_C, HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the
phosphorylation state of the phosphocarrier protein HPr
and regulates the utilization of carbon sources by
gram-positive bacteria. It catalyzes both the
ATP-dependent phosphorylation of Ser-46 of HPr and its
dephosphorylation by phosphorolysis. The latter
reaction uses inorganic phosphate as substrate and
produces pyrophosphate. Phosphoenolpyruvate
carboxykinase (PEPCK) and the C-terminal catalytic
domain of HprK/P are structurally similar with
conserved active site residues suggesting these two
phosphotransferases have related functions. The HprK/P
N-terminal domain is structurally similar to the
N-terminal domains of the MurE and MurF amino acid
ligases.
Length = 149
Score = 32.6 bits (75), Expect = 0.11
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR----LPDDCII 43
G V I G SG GKS L L +R + DD ++
Sbjct: 14 GIGVLITGPSGIGKSELALELIKRGHRLVADDRVV 48
>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional.
Length = 175
Score = 32.7 bits (75), Expect = 0.11
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDC----IIDGDI 47
G V G SGAGK+T+ AL+++L + ++DGD
Sbjct: 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 32.8 bits (75), Expect = 0.11
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+AI+G SG+GKSTL LSQ
Sbjct: 3 IAIIGYSGSGKSTLARKLSQ 22
>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 32.7 bits (75), Expect = 0.11
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDC----IIDGD 46
+G ++ I G +G+GK+T+ AL +RL +DGD
Sbjct: 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD 44
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 32.5 bits (75), Expect = 0.13
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPD 39
L+ I G SGAGKSTL+ AL + P+
Sbjct: 2 LIVISGPSGAGKSTLVKALLEEDPN 26
>gnl|CDD|225804 COG3265, GntK, Gluconate kinase [Carbohydrate transport and
metabolism].
Length = 161
Score = 32.3 bits (74), Expect = 0.14
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 19 MGASGAGKSTLLAALSQRLPDDC-IIDGD 46
MG SG+GKST+ +AL++RL IDGD
Sbjct: 1 MGVSGSGKSTVGSALAERL--GAKFIDGD 27
>gnl|CDD|232890 TIGR00235, udk, uridine kinase. Model contains a number of
longer eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 207
Score = 32.7 bits (75), Expect = 0.15
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPD 39
G ++ I G SG+GK+T+ + ++L
Sbjct: 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 33.3 bits (76), Expect = 0.15
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 130 LSGGERKRLSFATE------LLTDPALLLCDEPTTGLD 161
LSGGE+ ++FA L D +LL+ DEPT LD
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLD 839
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 33.2 bits (76), Expect = 0.16
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 129 VLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
V SGGE R+ A +++ L+ DE G+ +A + + + +L+ + VL
Sbjct: 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS--ERHQVL 497
Query: 185 CTIHQP 190
C H P
Sbjct: 498 CVTHLP 503
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 154
Score = 31.8 bits (72), Expect = 0.21
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVN 50
V + G SG GK++LL L + L N
Sbjct: 23 GPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERN 61
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 31.1 bits (71), Expect = 0.21
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCII 43
+ + G SG+GK+TLL L+++LP+ ++
Sbjct: 3 GAGIGVLTGESGSGKTTLLRRLARQLPNRRVV 34
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 32.6 bits (75), Expect = 0.22
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 129 VLSGGERKRLSFATELLT-----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ SGGE RL A + + P L+ DE TG+ A + + ++EL+ R V
Sbjct: 170 IASGGELSRLMLALKAILARKDAVPTLIF-DEIDTGISGEVAQAVGKKLKELS--RSHQV 226
Query: 184 LCTIHQP 190
LC H P
Sbjct: 227 LCITHLP 233
Score = 28.3 bits (64), Expect = 5.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 15 LVAIMGASGAGKSTLLAALS 34
L + G +GAGKS LL ALS
Sbjct: 23 LTVLTGETGAGKSILLDALS 42
>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase.
Length = 334
Score = 32.5 bits (74), Expect = 0.25
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
+V IMGA+G+GKS L L+ R P + II+ D
Sbjct: 45 VVVIMGATGSGKSRLSVDLATRFPSE-IINSD 75
>gnl|CDD|223993 COG1066, Sms, Predicted ATP-dependent serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 456
Score = 32.6 bits (75), Expect = 0.25
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLL----AALSQRLP 38
L G + G+++ I G G GKSTLL A L++R
Sbjct: 86 LGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGK 122
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de
novo or salvage biosynthesis of thymidine triphosphate
(TTP).
Length = 200
Score = 31.9 bits (73), Expect = 0.26
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
+ G GAGK+TL+ L++RL
Sbjct: 2 FIVFEGIDGAGKTTLIELLAERL 24
>gnl|CDD|226426 COG3911, COG3911, Predicted ATPase [General function prediction
only].
Length = 183
Score = 31.8 bits (72), Expect = 0.26
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
+ G GAGK+TLLAAL++
Sbjct: 12 FILTGGPGAGKTTLLAALARA 32
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 31.3 bits (72), Expect = 0.28
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR 48
+AI G +G+GKST+ L+++L + G IR
Sbjct: 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIR 34
>gnl|CDD|235858 PRK06762, PRK06762, hypothetical protein; Provisional.
Length = 166
Score = 31.5 bits (72), Expect = 0.31
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDC 41
TL+ I G SG+GK+T+ L +RL
Sbjct: 3 TLIIIRGNSGSGKTTIAKQLQERLGRGT 30
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 31.5 bits (72), Expect = 0.31
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+ ++G+ G+GKSTL L ++L
Sbjct: 4 IILIGSGGSGKSTLARQLGEKL 25
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 30.9 bits (70), Expect = 0.32
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+ I G G+GK+TL L++RL
Sbjct: 1 ILITGTPGSGKTTLAKELAERL 22
>gnl|CDD|177020 CHL00081, chlI, Mg-protoporyphyrin IX chelatase.
Length = 350
Score = 31.9 bits (73), Expect = 0.32
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
V IMG G GKST + AL LP+ ++ D
Sbjct: 41 VMIMGDRGTGKSTTIRALVDLLPEIEVVKDD 71
>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase. TrmE (MnmE,
ThdF, MSS1) is a 3-domain protein found in bacteria and
eukaryotes. It controls modification of the uridine at
the wobble position (U34) of tRNAs that read codons
ending with A or G in the mixed codon family boxes.
TrmE contains a GTPase domain that forms a canonical
Ras-like fold. It functions a molecular switch GTPase,
and apparently uses a conformational change associated
with GTP hydrolysis to promote the tRNA modification
reaction, in which the conserved cysteine in the
C-terminal domain is thought to function as a catalytic
residue. In bacteria that are able to survive in
extremely low pH conditions, TrmE regulates
glutamate-dependent acid resistance.
Length = 159
Score = 31.3 bits (72), Expect = 0.33
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
V I G GKS+LL AL+ R
Sbjct: 6 VVIAGKPNVGKSSLLNALAGR 26
>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety
of proteins which share a common ATP-binding domain.
Functionally, proteins in this superfamily use the
energy from hydrolysis of NTP to transfer electron or
ion.
Length = 99
Score = 30.1 bits (68), Expect = 0.35
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 10/40 (25%)
Query: 16 VAIMGASGAGKSTLLAALSQRLP----------DDCIIDG 45
+ + G G GK+TL A L+ L D +ID
Sbjct: 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDDYVLIDT 41
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 31.4 bits (72), Expect = 0.36
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD---CIIDGDI 47
+ + G G+GK+ L+ + L D+ +I GDI
Sbjct: 15 RIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDI 50
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 32.0 bits (73), Expect = 0.38
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 130 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGER RL+ + L + LL+ DEPT LD KL+ +M +K
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIM---ERYLRKIP 845
Query: 184 LCTIHQPSSELIDMFDKII 202
I EL D D +I
Sbjct: 846 QVIIVSHDEELKDAADYVI 864
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 31.4 bits (71), Expect = 0.40
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 15 LVAIMGASGAGKSTLLAAL 33
L I G +G+GK+T+L A+
Sbjct: 21 LTLIYGPNGSGKTTILDAI 39
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 31.2 bits (71), Expect = 0.45
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPD 39
+ + G SG GKS + AL P+
Sbjct: 1 QRRPIVLSGPSGVGKSHIKKALLDEYPE 28
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins
[General function prediction only].
Length = 219
Score = 31.1 bits (70), Expect = 0.47
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD 40
+ ++G G GK+TLL L +
Sbjct: 8 IVVLGDGGVGKTTLLNRLVGDEFPE 32
>gnl|CDD|232811 TIGR00073, hypB, hydrogenase accessory protein HypB. A GTP
hydrolase for assembly of nickel metallocenter of
hydrogenase. A similar protein, ureG, is an accessory
protein for urease, which also uses nickel. hits
scoring 75 and above are safe as orthologs. [SS 1/05/04
I changed the role_ID and process GO from protein
folding to to protein modification, since a protein
folding role has not been established, but HypB is
implicated in insertion of nickel into the large
subunit of NiFe hydrogenases.] [Protein fate, Protein
modification and repair].
Length = 208
Score = 30.8 bits (70), Expect = 0.54
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 12 SGTLVA-IMGASGAGKSTLLAALSQRLPDD---CIIDGDI 47
G +V M + G+GK+TL+ L L D+ +I+GD+
Sbjct: 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDV 59
>gnl|CDD|236133 PRK07933, PRK07933, thymidylate kinase; Validated.
Length = 213
Score = 30.7 bits (70), Expect = 0.55
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
L+AI G GAGK TL AL L
Sbjct: 2 LIAIEGVDGAGKRTLTEALRAAL 24
>gnl|CDD|237039 PRK12288, PRK12288, GTPase RsgA; Reviewed.
Length = 347
Score = 31.4 bits (72), Expect = 0.56
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 6/47 (12%)
Query: 1 MTELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
+ ELE AAL+G + +G SG GKS+L+ AL LP+ I+ GD+
Sbjct: 196 LEELE---AALTGRISIFVGQSGVGKSSLINAL---LPEAEILVGDV 236
>gnl|CDD|181310 PRK08233, PRK08233, hypothetical protein; Provisional.
Length = 182
Score = 30.5 bits (69), Expect = 0.58
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI 42
++ I SG GK+TL L+ +L +
Sbjct: 5 IITIAAVSGGGKTTLTERLTHKLKNSKA 32
>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase. Alternate names
include delta(2)-isopentenylpyrophosphate transferase,
IPP transferase, 2-methylthio-N6-isopentyladenosine
tRNA modification enzyme. Catalyzes the first step in
the modification of an adenosine near the anticodon to
2-methylthio-N6-isopentyladenosine. Understanding of
substrate specificity has changed [Protein synthesis,
tRNA and rRNA base modification].
Length = 287
Score = 31.2 bits (71), Expect = 0.59
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
++ +MG + +GKS L L+Q+L + II D
Sbjct: 1 VIFLMGPTASGKSQLSIQLAQKLNAE-IISVD 31
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 31.3 bits (71), Expect = 0.62
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 12 SGTLVAIMGASGAGKSTLLAAL 33
S L AI G +GAGK+TLL A+
Sbjct: 29 SNGLFAITGPTGAGKTTLLDAI 50
>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 30.9 bits (70), Expect = 0.64
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
V +MGA+GAGKS+L+ AL Q
Sbjct: 42 VLLMGATGAGKSSLINALFQGE 63
>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK)
catalyzes the phosphorylation of adenosine
5'-phosphosulfate to form 3'-phosphoadenosine
5'-phosphosulfate (PAPS). The end-product PAPS is a
biologically "activated" sulfate form important for the
assimilation of inorganic sulfate.
Length = 149
Score = 30.1 bits (69), Expect = 0.65
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 20 GASGAGKSTLLAALSQRLPDDCI----IDGD-IR 48
G SG+GKST+ AL ++L +DGD +R
Sbjct: 6 GLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39
>gnl|CDD|200328 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase.
Members of this protein family comprise a distinct
clade of putative ATPase associated with an integral
membrane complex likely to act in pilus formation,
secretion, or conjugal transfer. The association of most
members with a nearby gene for a DEAH-box helicase
suggests a role in conjugal transfer.
Length = 340
Score = 31.2 bits (71), Expect = 0.66
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 18 IMGASGAGKSTLLAALSQRLPDD 40
+ G +G+GK+TLL+AL +P D
Sbjct: 183 VSGGTGSGKTTLLSALLALVPPD 205
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 30.7 bits (70), Expect = 0.70
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 12/48 (25%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL------------PDDCIIDGDIR 48
G + I G GAGK+T L +RL P I IR
Sbjct: 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIR 50
>gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional.
Length = 198
Score = 30.3 bits (69), Expect = 0.75
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 20 GASGAGKSTLLAALSQRL 37
G SG+GKST+ AL + L
Sbjct: 31 GLSGSGKSTVAGALEEAL 48
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and
related GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 30.8 bits (70), Expect = 0.76
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD 40
TG A ++ I G GAGKSTL+ AL + L +
Sbjct: 45 YPRTGNAH---VIGITGVPGAGKSTLIEALGRELRER 78
>gnl|CDD|232966 TIGR00416, sms, DNA repair protein RadA. The gene protuct codes
for a probable ATP-dependent protease involved in both
DNA repair and degradation of proteins, peptides,
glycopeptides. Also known as sms. Residues 11-28 of the
SEED alignment contain a putative Zn binding domain.
Residues 110-117 of the seed contain a putative ATP
binding site both documented in Haemophilus and in
Listeria monocytogenes. for E.coli see ( J. BACTERIOL.
178:5045-5048(1996)) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 454
Score = 30.9 bits (70), Expect = 0.81
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLL----AALSQRLP 38
L G + G+L+ I G G GKSTLL L++
Sbjct: 87 LGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQM 123
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 30.3 bits (69), Expect = 0.81
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCI-IDG----DIRVNGKPV 54
+ I G G GK+TL+ + + L + + + G ++R G+ +
Sbjct: 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRI 45
>gnl|CDD|233355 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant
glucokinase family. This model represents a subfamily
of proteins that includes thermoresistant and
thermosensitve isozymes of gluconate kinase
(gluconokinase) in E. coli and other related proteins;
members of this family are often named by similarity to
the thermostable isozyme. These proteins show homology
to shikimate kinases and adenylate kinases but not to
gluconate kinases from the FGGY family of carbohydrate
kinases.
Length = 163
Score = 30.1 bits (68), Expect = 0.82
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 18 IMGASGAGKSTLLAALSQRLPDDCIIDGD 46
+MG +G+GKST+ +AL+ RL I+GD
Sbjct: 3 LMGVAGSGKSTIASALAHRLGAK-FIEGD 30
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 30.9 bits (69), Expect = 0.83
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI--IDGDIRVNGKPVEGKFRSACGFMYQHDL 70
+VA++G G GKSTL+ +L +R I I G I V V GK R DL
Sbjct: 71 IVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV----VSGKTRRITFLECPSDL 124
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and
host eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 30.3 bits (69), Expect = 0.83
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDD 40
A + + I G +G+GK+TLL AL +P D
Sbjct: 21 AVEARKNILISGGTGSGKTTLLNALLAFIPPD 52
>gnl|CDD|224930 COG2019, AdkA, Archaeal adenylate kinase [Nucleotide transport
and metabolism].
Length = 189
Score = 30.1 bits (68), Expect = 0.83
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIID-GDI 47
V I G G GK+T+L + L I++ GD+
Sbjct: 7 VVITGVPGVGKTTVLKIALKELVKHKIVNYGDL 39
>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 30.2 bits (69), Expect = 0.84
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL 37
G + I G GAGKST + L + L
Sbjct: 3 GMFITIEGIDGAGKSTQIELLKELL 27
>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
Length = 283
Score = 30.7 bits (70), Expect = 0.85
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 14 TLVAIMGASGAGKSTL---LAALSQRLPDDCIID 44
++ I G+ GKST L AL R P+ +D
Sbjct: 83 FIIGIAGSVAVGKSTTARILQALLSRWPESPKVD 116
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA
and the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial
binding of EF-G as well. The dissociation of EF-G
leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 30.6 bits (70), Expect = 0.89
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+A++G SG+GK+TL AL
Sbjct: 2 IALVGHSGSGKTTLAEAL 19
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 30.7 bits (69), Expect = 0.89
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR 36
G ++A++G +GAGK+T +A L+QR
Sbjct: 350 GGVIALVGPTGAGKTTTIAKLAQR 373
>gnl|CDD|224345 COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport
and metabolism].
Length = 216
Score = 30.4 bits (69), Expect = 0.90
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 16 VAIMGASGAGKSTLLAALSQRLP 38
+ I G GAGKSTL AL++ L
Sbjct: 7 IVIEGMIGAGKSTLAQALAEHLG 29
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 30.5 bits (70), Expect = 0.93
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR 36
G V I G GKS+LL AL
Sbjct: 215 GLKVVIAGRPNVGKSSLLNALLGE 238
>gnl|CDD|236781 PRK10869, PRK10869, recombination and repair protein; Provisional.
Length = 553
Score = 30.7 bits (70), Expect = 0.97
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 12/69 (17%)
Query: 129 VLSGGERKRLSFATELLT-----DPALLLCDEPTTGLDSFSASKLIRMMREL--TSQRKK 181
V SGGE R++ A +++T PAL+ DE G+ +A+ + +++R+L ++Q
Sbjct: 430 VASGGELSRIALAIQVITARKMETPALIF-DEVDVGISGPTAAVVGKLLRQLGESTQ--- 485
Query: 182 TVLCTIHQP 190
V+C H P
Sbjct: 486 -VMCVTHLP 493
>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding
protein. Members of this family are found in a range
of archaea and eukaryotes and have hypothesised ATP
binding activity.
Length = 235
Score = 30.4 bits (69), Expect = 0.98
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 18 IMGASGAGKSTLLAALSQRLPD 39
++G +G+GK+T + ALS+ LP
Sbjct: 1 VVGPAGSGKTTFVGALSEILPL 22
>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family. The YihA (EngB)
subfamily of GTPases is typified by the E. coli YihA,
an essential protein involved in cell division control.
YihA and its orthologs are small proteins that
typically contain less than 200 amino acid residues and
consists of the GTPase domain only (some of the
eukaryotic homologs contain an N-terminal extension of
about 120 residues that might be involved in organellar
targeting). Homologs of yihA are found in most
Gram-positive and Gram-negative pathogenic bacteria,
with the exception of Mycobacterium tuberculosis. The
broad-spectrum nature of YihA and its essentiality for
cell viability in bacteria make it an attractive
antibacterial target.
Length = 170
Score = 29.8 bits (68), Expect = 1.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
VA G S GKS+L+ AL+ R
Sbjct: 2 VAFAGRSNVGKSSLINALTNR 22
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain
only a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 29.6 bits (67), Expect = 1.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLP 38
L+ ++G G+GKST L + L
Sbjct: 1 LILMVGLPGSGKSTFARRLLRELG 24
>gnl|CDD|237393 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 30.6 bits (70), Expect = 1.0
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
++AI G +GAGKST+ A++++L
Sbjct: 286 IIAIDGPAGAGKSTVTRAVAKKL 308
>gnl|CDD|206728 cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP1)-like family
includes GTPBP2. Mammalian GTP binding protein 1
(GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1
are GTPases whose specific functions remain unknown. In
mouse, GTPBP1 is expressed in macrophages, in smooth
muscle cells of various tissues and in some neurons of
the cerebral cortex; GTPBP2 tissue distribution appears
to overlap that of GTPBP1. In human leukemia and
macrophage cell lines, expression of both GTPBP1 and
GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The
chromosomal location of both genes has been identified
in humans, with GTPBP1 located in chromosome 22q12-13.1
and GTPBP2 located in chromosome 6p21-12. Human
glioblastoma multiforme (GBM), a highly-malignant
astrocytic glioma and the most common cancer in the
central nervous system, has been linked to chromosomal
deletions and a translocation on chromosome 6. The GBM
translocation results in a fusion of GTPBP2 and PTPRZ1,
a protein involved in oligodendrocyte differentiation,
recovery, and survival. This fusion product may
contribute to the onset of GBM.
Length = 224
Score = 30.0 bits (68), Expect = 1.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD 40
VA++G AGKSTLL L+Q D+
Sbjct: 2 VAVVGNVDAGKSTLLGVLTQGELDN 26
>gnl|CDD|239388 cd03114, ArgK-like, The function of this protein family is
unkown. The protein sequences are similar to the ArgK
protein in E. coli. ArgK protein is a membrane ATPase
which is required for transporting arginine, ornithine
and lysine into the cells by the arginine and ornithine
(AO system) and lysine, arginine and ornithine (LAO)
transport systems.
Length = 148
Score = 29.6 bits (67), Expect = 1.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD 40
+ I G GAGKSTL+ AL L
Sbjct: 2 IGITGVPGAGKSTLIDALITALRAR 26
>gnl|CDD|223718 COG0645, COG0645, Predicted kinase [General function prediction
only].
Length = 170
Score = 29.7 bits (67), Expect = 1.2
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV--NGKPVEGKFRSACGFMYQHDL 70
G LV + G G+GKSTL L++ L + IR G P E + + L
Sbjct: 1 GRLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPA--------GL 52
Query: 71 FSPSLT--VYEHLYFMALLKLDR 91
+SP+ T VY+ L A L L
Sbjct: 53 YSPAATAAVYDELLGRAELLLSS 75
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 1.2
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 17/62 (27%)
Query: 130 LSGGERK--RLSFAT---ELLTD--------PALLLCDEPTTGLDSFSAS---KLIRMMR 173
LSGGER LS LL + P L+L DEPT LDS S L+ MR
Sbjct: 782 LSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLIL-DEPTVFLDSGHVSQLVDLVESMR 840
Query: 174 EL 175
L
Sbjct: 841 RL 842
>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase.
Length = 468
Score = 30.2 bits (68), Expect = 1.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
+V +MG +G+GKS L L+ P + II+ D
Sbjct: 22 AKVVVVMGPTGSGKSKLAVDLASHFPVE-IINAD 54
>gnl|CDD|131576 TIGR02524, dot_icm_DotB, Dot/Icm secretion system ATPase DotB.
Members of this protein family are the DotB component of
Dot/Icm secretion systems, as found in obligate
intracellular pathogens Legionella pneumophila and
Coxiella burnetii. While this system resembles type IV
secretion systems and has been called a form of type IV,
the liturature now seems to favor calling this the
Dot/Icm system. This family is most closely related to
TraJ proteins of plasmid transfer, rather than to
proteins of other type IV secretion systems.
Length = 358
Score = 30.0 bits (67), Expect = 1.3
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
+V I GA+G+GKSTLLAA+ + L
Sbjct: 136 IVFITGATGSGKSTLLAAIIREL 158
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity.
The Ras superfamily is divided into at least four
families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf
families. This superfamily also includes proteins like
the GTP translation factors, Era-like GTPases, and
G-alpha chain of the heterotrimeric G proteins. Members
of the Ras superfamily regulate a wide variety of
cellular functions: the Ras family regulates gene
expression, the Rho family regulates cytoskeletal
reorganization and gene expression, the Rab and
Sar1/Arf families regulate vesicle trafficking, and the
Ran family regulates nucleocytoplasmic transport and
microtubule organization. The GTP translation factor
family regulates initiation, elongation, termination,
and release in translation, and the Era-like GTPase
family regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 29.3 bits (66), Expect = 1.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 17 AIMGASGAGKSTLLAALSQR 36
++G G GKS+LL AL
Sbjct: 1 VVVGRGGVGKSSLLNALLGG 20
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 29.8 bits (68), Expect = 1.4
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
+ G SG GKSTLL AL PD + G+I
Sbjct: 169 LAGQSGVGKSTLLNAL---APDLELKTGEI 195
>gnl|CDD|216796 pfam01935, DUF87, Domain of unknown function DUF87. The function
of this prokaryotic domain is unknown. It contains
several conserved aspartates and histidines that could
be metal ligands.
Length = 218
Score = 29.6 bits (67), Expect = 1.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
AI+G++G+GKS +A L + L
Sbjct: 26 FAILGSTGSGKSNTVAVLLEEL 47
>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General
function prediction only].
Length = 398
Score = 30.1 bits (68), Expect = 1.4
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD----CIIDGDIRVNGKP------------VEGKFR 59
V ++G +GKSTL L+ +L IID D+ G+ E
Sbjct: 76 VMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADV---GQSEIGPPGFISLAFPESPVI 132
Query: 60 SACGFMYQHDLF--SPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 103
S F S S + Y + +L K LI+
Sbjct: 133 SLSELEPFTLYFVGSISPQGFPGRYIAGVARLVDLAKKEADFILID 178
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 30.2 bits (68), Expect = 1.4
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 130 LSGGERKRLSFATELLTD--PALLLCDEPTTGLDSFSASKLIRMMRE 174
LS G + L+ AT LL+ P LLL DEP T L L +MR
Sbjct: 271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRS 317
Score = 27.8 bits (62), Expect = 7.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 14 TLVAIMGASGAGKSTLLAALS 34
+ I+GA+GAGKS AL
Sbjct: 23 RVNVIIGANGAGKSNFYDALR 43
>gnl|CDD|206685 cd01898, Obg, Obg GTPase. The Obg nucleotide binding protein
subfamily has been implicated in stress response,
chromosome partitioning, replication initiation,
mycelium development, and sporulation. Obg proteins are
among a large group of GTP binding proteins conserved
from bacteria to humans. The E. coli homolog, ObgE is
believed to function in ribosomal biogenesis. Members
of the subfamily contain two equally and highly
conserved domains, a C-terminal GTP binding domain and
an N-terminal glycine-rich domain.
Length = 170
Score = 29.3 bits (67), Expect = 1.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 16 VAIMGASGAGKSTLLAALS 34
V ++G AGKSTLL+A+S
Sbjct: 3 VGLVGLPNAGKSTLLSAIS 21
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 30.0 bits (68), Expect = 1.5
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 2 TELELTGAALSGTLVAIMGASGAGKSTLLAAL 33
E++L TL I G +GAGKST+L AL
Sbjct: 20 IEIQLDKVK--KTL--ITGKNGAGKSTMLEAL 47
>gnl|CDD|236167 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 29.9 bits (68), Expect = 1.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+A++G GAGKSTL L+ RL
Sbjct: 136 IALIGLRGAGKSTLGRMLAARL 157
>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family
primarily contains translation initiation, elongation
and release factors. The GTP translation factor family
consists primarily of translation initiation,
elongation, and release factors, which play specific
roles in protein translation. In addition, the family
includes Snu114p, a component of the U5 small nuclear
riboprotein particle which is a component of the
spliceosome and is involved in excision of introns,
TetM, a tetracycline resistance gene that protects the
ribosome from tetracycline binding, and the unusual
subfamily CysN/ATPS, which has an unrelated function
(ATP sulfurylase) acquired through lateral transfer of
the EF1-alpha gene and development of a new function.
Length = 183
Score = 29.2 bits (66), Expect = 1.6
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD 40
V ++G GK+TL +L +
Sbjct: 2 VGVIGHVDHGKTTLTGSLLYQTGAI 26
>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of
preribosomal RNA processing complexes. Bms1 is an
essential, evolutionarily conserved, nucleolar protein.
Its depletion interferes with processing of the 35S
pre-rRNA at sites A0, A1, and A2, and the formation of
40S subunits. Bms1, the putative endonuclease Rc11, and
the essential U3 small nucleolar RNA form a stable
subcomplex that is believed to control an early step in
the formation of the 40S subumit. The C-terminal domain
of Bms1 contains a GTPase-activating protein (GAP) that
functions intramolecularly. It is believed that Rc11
activates Bms1 by acting as a guanine-nucleotide
exchange factor (GEF) to promote GDP/GTP exchange, and
that activated (GTP-bound) Bms1 delivers Rc11 to the
preribosomes.
Length = 231
Score = 29.6 bits (67), Expect = 1.6
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
Query: 14 TLVAIMGASGAGKSTLLAAL-----SQRLPDDCIIDGDIRVNGKPVEGKFR 59
+V ++G G GKSTL+ +L Q L D I G I + V GK R
Sbjct: 40 LVVVVVGPPGVGKSTLIRSLIKRYTKQNLSD---IKGPITI----VTGKKR 83
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo
and salvage pathways of DTTP synthesis. Catalytic
activity: ATP + thymidine 5'-phosphate = ADP +
thymidine 5'-diphosphate [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 195
Score = 29.3 bits (66), Expect = 1.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD 39
+ G + I G GAGK+T L + L +
Sbjct: 1 MRGMFIVIEGIDGAGKTTQANLLKKLLQE 29
>gnl|CDD|236926 PRK11545, gntK, gluconate kinase 1; Provisional.
Length = 163
Score = 29.3 bits (66), Expect = 1.7
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 19 MGASGAGKSTLLAALSQRLPDDCIIDGD 46
MG SG+GKS + + ++ +L +DGD
Sbjct: 1 MGVSGSGKSAVASEVAHQL-HAAFLDGD 27
>gnl|CDD|227341 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 29.7 bits (67), Expect = 1.8
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 15 LVAIMGASGAGKSTLLAAL 33
LV I+GA+G+GKST +AA+
Sbjct: 129 LVIIVGATGSGKSTTMAAM 147
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this
model include Ras, RhoA, Rab11, translation elongation
factor G, translation initiation factor IF-2,
tetratcycline resistance protein TetM, CDC42, Era,
ADP-ribosylation factors, tdhF, and many others. In
some proteins the domain occurs more than once.This
model recognizes a large number of small GTP-binding
proteins and related domains in larger proteins. Note
that the alpha chains of heterotrimeric G proteins are
larger proteins in which the NKXD motif is separated
from the GxxxxGK[ST] motif (P-loop) by a long insert
and are not easily detected by this model [Unknown
function, General].
Length = 162
Score = 28.9 bits (65), Expect = 1.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
+ I+G GKSTLL L
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGN 24
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 29.3 bits (67), Expect = 1.8
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+AI G +G+GK T+ L+++L
Sbjct: 7 IAIDGPAGSGKGTVAKILAKKL 28
>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the
form of molybdenum cofactor (Moco) which is associated
with the metabolism of nitrogen, carbon and sulfur by
redox active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe
and mog. The mob locus contains mobA and mobB genes.
MobB catalyzes the attachment of the guanine
dinucleotide to molybdopterin.
Length = 159
Score = 28.8 bits (65), Expect = 2.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
++ +G SG+GK+TLL L L
Sbjct: 3 VIGFVGYSGSGKTTLLEKLIPAL 25
>gnl|CDD|224160 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 29.7 bits (67), Expect = 2.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPD 39
I G G KSTL AL+ LP+
Sbjct: 41 ALIAGEKGTAKSTLARALADLLPE 64
>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Validated.
Length = 568
Score = 29.6 bits (67), Expect = 2.0
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD-----CIIDGDI 47
G V G SGAGKST+ AL +L + ++DGD+
Sbjct: 392 GFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDV 431
>gnl|CDD|112137 pfam03308, ArgK, ArgK protein. The ArgK protein acts as an
ATPase enzyme and as a kinase, and phosphorylates
periplasmic binding proteins involved in the LAO
(lysine, arginine, ornithine)/AO transport systems.
Length = 267
Score = 29.3 bits (66), Expect = 2.0
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAAL 33
+ LTG A V I G GAGKSTL+ AL
Sbjct: 23 MPLTGRAH---RVGITGVPGAGKSTLIEAL 49
>gnl|CDD|185714 cd07905, Adenylation_DNA_ligase_LigC, Adenylation domain of
Mycobacterium tuberculosis LigC-like ATP-dependent DNA
ligases. Bacterial DNA ligases are divided into two
broad classes: NAD-dependent and ATP-dependent. All
bacterial species have a NAD-dependent DNA ligase
(LigA). Some bacterial genomes contain multiple genes
for DNA ligases that are predicted to use ATP as their
cofactor, including Mycobacterium tuberculosis LigB,
LigC, and LigD. This group is composed of ATP-dependent
DNA ligases similar to Mycobacterium tuberculosis LigC.
ATP-dependent polynucleotide ligases catalyze
phosphodiester bond formation using nicked nucleic acid
substrates with the high energy nucleotide of ATP as a
cofactor in a three step reaction mechanism. DNA
ligases play a vital role in the diverse processes of
DNA replication, recombination and repair. Members of
this group contain adenylation and C-terminal
oligonucleotide/oligosaccharide binding (OB)-fold
domains, comprising a catalytic core unit that is
common to all members of the ATP-dependent DNA ligase
family. The adenylation domain binds ATP and contains
many of the active-site residues. The common catalytic
core unit comprises six conserved sequence motifs (I,
III, IIIa, IV, V and VI) that define this family of
related nucleotidyltransferases.
Length = 194
Score = 29.1 bits (66), Expect = 2.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 29 LLAALSQRLPDDCIIDGDIRV 49
L+AA LP C++DG++ V
Sbjct: 55 LVAAARALLPPGCVLDGELVV 75
>gnl|CDD|235210 PRK04040, PRK04040, adenylate kinase; Provisional.
Length = 188
Score = 29.1 bits (66), Expect = 2.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD 40
+V + G G GK+T+L ++L +D
Sbjct: 4 VVVVTGVPGVGKTTVLNKALEKLKED 29
>gnl|CDD|237727 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobA/MobB;
Provisional.
Length = 366
Score = 29.3 bits (66), Expect = 2.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL 37
+ + L+ ++G SG GK+TLL L L
Sbjct: 196 IPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPEL 229
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). This protein,
adenylylsulfate kinase, is often found as a fusion
protein with sulfate adenylyltransferase. Important
residue (active site in E.coli) is residue 100 of the
seed alignment [Central intermediary metabolism, Sulfur
metabolism].
Length = 184
Score = 29.0 bits (65), Expect = 2.3
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI----IDGD 46
G ++ + G SG+GKST+ AL ++L +DGD
Sbjct: 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD 55
>gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only].
Length = 527
Score = 29.4 bits (66), Expect = 2.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD 40
LV + G GKSTL+ L DD
Sbjct: 119 LVGVAGHVDHGKSTLVGVLVTGRLDD 144
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 29.1 bits (66), Expect = 2.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+AI G +G+GKST+ L+++L
Sbjct: 7 IAIDGPAGSGKSTVAKILAEKL 28
>gnl|CDD|238541 cd01121, Sms, Sms (bacterial radA) DNA repair protein. This protein
is not related to archael radA any more than is to other
RecA-like NTPases. Sms has a role in recombination and
recombinational repair and is responsible for the
stabilization or processing of branched DNA molecules.
Length = 372
Score = 29.1 bits (66), Expect = 2.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLP 38
L G + G+++ I G G GKSTLL ++ RL
Sbjct: 75 LGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA 107
>gnl|CDD|225806 COG3267, ExeA, Type II secretory pathway, component ExeA
(predicted ATPase) [Intracellular trafficking and
secretion].
Length = 269
Score = 28.9 bits (65), Expect = 2.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIID 44
A ++A+ G G+GK+ L AL L +D +
Sbjct: 46 AIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAV 82
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 29.0 bits (65), Expect = 2.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
S G R +L F+ + +P +L+ DE + D A K + + E Q KT+ H
Sbjct: 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ-NKTIFFVSH 201
>gnl|CDD|223581 COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha
subunit - helicase superfamily I member [DNA
replication, recombination, and repair].
Length = 696
Score = 29.4 bits (66), Expect = 2.5
Identities = 25/129 (19%), Positives = 37/129 (28%), Gaps = 12/129 (9%)
Query: 47 IRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLL 106
G P R + + FS L A + L+
Sbjct: 194 ALNLGIPGNSPERIRAAALALLEEFS--LISGGPGTG------KTTTIAKLLLKLLEQPE 245
Query: 107 IE-LGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165
IE L +Q + + T K L ER L A L+ L + D A
Sbjct: 246 IEVLKSGLAQRISL--LAPTGKAALRLTERGSLRLAERLIARAELRILDSLFVA-LKIRA 302
Query: 166 SKLIRMMRE 174
+ R++ E
Sbjct: 303 GTVHRLLGE 311
>gnl|CDD|224985 COG2074, COG2074, 2-phosphoglycerate kinase [Carbohydrate transport
and metabolism].
Length = 299
Score = 28.9 bits (65), Expect = 2.6
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD-IR 48
++ I GASG GKST+ L++RL +I D IR
Sbjct: 90 LIILIGGASGVGKSTIAGELARRLGIRSVISTDSIR 125
>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 28.8 bits (65), Expect = 2.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 20 GASGAGKSTLLAALSQRL 37
G SG+GKST+ AL ++L
Sbjct: 30 GLSGSGKSTIANALEEKL 47
>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 28.9 bits (66), Expect = 2.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 16 VAIMGASGAGKSTLLAAL 33
VAI+G GKSTLL AL
Sbjct: 8 VAIVGRPNVGKSTLLNAL 25
>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes
a univeral, mostly one-gene-per-genome GTP-binding
protein that associates with ribosomal subunits and
appears to play a role in ribosomal RNA maturation. This
GTPase, related to the nucleolar protein Obg, is
designated CgtA in bacteria. Mutations in this gene are
pleiotropic, but it appears that effects on cellular
functions such as chromosome partition may be secondary
to the effect on ribosome structure. Recent work done in
Vibrio cholerae shows an essential role in the stringent
response, in which RelA-dependent ability to synthesize
the alarmone ppGpp is required for deletion of this
GTPase to be lethal [Protein synthesis, Other].
Length = 329
Score = 28.9 bits (66), Expect = 2.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 16 VAIMGASGAGKSTLLAALS 34
V ++G AGKSTL++A+S
Sbjct: 160 VGLVGLPNAGKSTLISAVS 178
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of
several bacterial zeta toxin proteins. Zeta toxin is
thought to be part of a postregulational killing system
in bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 28.8 bits (65), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 20 GASGAGKSTLLAALSQRLPDD--CIIDGD 46
G GAGK+ L AL + L ID D
Sbjct: 19 GQPGAGKTELARALLEELGGGNVVRIDPD 47
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 29.0 bits (65), Expect = 2.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPD 39
+ I G SG GK TL++ L + P
Sbjct: 138 IVISGPSGVGKGTLISMLMKEFPS 161
>gnl|CDD|206690 cd04104, p47_IIGP_like, p47 GTPase family includes IGTP,
TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. The p47
GTPase family consists of several highly homologous
proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI,
LRG-47, and IIGP1. They are found in higher eukaryotes
where they play a role in immune resistance against
intracellular pathogens. p47 proteins exist at low
resting levels in mouse cells, but are strongly induced
by Type II interferon (IFN-gamma). ITGP is critical for
resistance to Toxoplasma gondii infection and in
involved in inhibition of Coxsackievirus-B3-induced
apoptosis. TGTP was shown to limit vesicular stomatitis
virus (VSV) infection of fibroblasts in vitro. IRG-47
is involved in resistance to T. gondii infection.
LRG-47 has been implicated in resistance to T. gondii,
Listeria monocytogenes, Leishmania, and mycobacterial
infections. IIGP1 has been shown to localize to the ER
and to the Golgi membranes in IFN-induced cells and
inflamed tissues. In macrophages, IIGP1 interacts with
hook3, a microtubule binding protein that participates
in the organization of the cis-Golgi compartment.
Length = 197
Score = 28.4 bits (64), Expect = 2.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+A+ G SGAGKS+ + AL
Sbjct: 4 IAVTGESGAGKSSFINAL 21
>gnl|CDD|236191 PRK08224, ligC, ATP-dependent DNA ligase; Reviewed.
Length = 350
Score = 29.1 bits (66), Expect = 3.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 29 LLAALSQRLPDDCIIDGDIRVNGKPVEGKF 58
L+AAL LP+ C++DG+I V +G
Sbjct: 63 LVAALRAELPERCVLDGEIVV---ARDGGL 89
>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyzes the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 28.4 bits (64), Expect = 3.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI----IDGD-IR 48
G + G SG+GKST+ AL ++L I +DGD +R
Sbjct: 2 GCTIWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVR 42
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 28.8 bits (65), Expect = 3.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRL 37
L+ + G SG GK+T L L+ L
Sbjct: 9 VLLGVAGDSGCGKTTFLRGLADLL 32
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains
(pfam00036), that may bind calcium. They are also
larger than classical small GTPases. It has been
proposed that they are involved in mitochondrial
homeostasis and apoptosis.
Length = 116
Score = 27.8 bits (62), Expect = 3.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 16 VAIMGASGAGKSTLLAAL 33
V ++G G+GKS+LL+ L
Sbjct: 2 VVVIGDKGSGKSSLLSQL 19
>gnl|CDD|169051 PRK07667, PRK07667, uridine kinase; Provisional.
Length = 193
Score = 28.5 bits (64), Expect = 3.1
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 1 MTELELTGAALS----GTLVAIMGASGAGKSTLLAALSQRL 37
M+ EL ++ I G S +GK+T +A L + +
Sbjct: 1 MSTNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41
>gnl|CDD|234003 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA.
This protein contains domains distinctive of a single
strand exonuclease (N-terminus, MobA/MobL, pfam03389) as
well as a helicase domain (central region, homologous to
the corresponding region of the F-type relaxase TraI,
TIGR02760). This protein likely fills the same role as
TraI(F), nicking (at the oriT site) and unwinding the
coiled plasmid prior to conjugative transfer.
Length = 744
Score = 29.0 bits (65), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 12 SGTLVAIMGASGAGKSTLLAAL 33
SG + ++G +G GKST+L A
Sbjct: 367 SGDIAVVVGRAGTGKSTMLKAA 388
>gnl|CDD|223775 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 28.3 bits (64), Expect = 3.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCI-IDGDI-RVNGKPV--------EGKFR 59
+ ++G GAGKST+ AL++ L I D +I + G + E FR
Sbjct: 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFR 58
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 29.1 bits (66), Expect = 3.3
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 129 VLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
V SGGE R+ A +++ D L+ DE TG+ A + + +R L+ + VL
Sbjct: 431 VASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQ--VL 488
Query: 185 CTIHQP 190
C H P
Sbjct: 489 CVTHLP 494
Score = 27.6 bits (62), Expect = 8.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 15 LVAIMGASGAGKSTLLAALS 34
L + G +GAGKS ++ AL
Sbjct: 24 LTVLTGETGAGKSIIIDALG 43
>gnl|CDD|215920 pfam00437, T2SE, Type II/IV secretion system protein. This family
contains both type II and type IV pathway secretion
proteins from bacteria. VirB11 ATPase is a subunit of
the Agrobacterium tumefaciens transfer DNA (T-DNA)
transfer system, a type IV secretion pathway required
for delivery of T-DNA and effector proteins to plant
cells during infection.
Length = 273
Score = 28.8 bits (65), Expect = 3.3
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 18 IMGASGAGKSTLLAALSQRLP--DDCII 43
+ G +G+GK+TLL AL + D+ I+
Sbjct: 134 VSGGTGSGKTTLLYALLNEINTDDERIV 161
>gnl|CDD|213904 TIGR04291, arsen_driv_ArsA, arsenical pump-driving ATPase. The
broader family (TIGR00345) to which the current family
belongs consists of transport-energizing ATPases,
including to TRC40/GET3 family involved in
post-translational insertion of protein C-terminal
transmembrane anchors into membranes from the cyotosolic
face. This family, however, is restricted to ATPases
that energize pumps that export arsenite (or
antimonite).
Length = 566
Score = 28.9 bits (65), Expect = 3.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPD 39
L+ MG G GK+T+ AA++ RL +
Sbjct: 323 LIMTMGKGGVGKTTVAAAIAVRLAN 347
>gnl|CDD|224768 COG1855, COG1855, ATPase (PilT family) [General function prediction
only].
Length = 604
Score = 28.9 bits (65), Expect = 3.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQ 35
G L+A GA GAGKST AL++
Sbjct: 264 EGILIA--GAPGAGKSTFAQALAE 285
>gnl|CDD|173066 PRK14602, ruvA, Holliday junction DNA helicase RuvA; Provisional.
Length = 203
Score = 28.5 bits (64), Expect = 3.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDD---CIIDGDI----RVNG 51
T + ++ S G T LA LSQ PDD + + D+ RV+G
Sbjct: 72 TFIVLISISKVGAKTALAILSQFRPDDLRRLVAEEDVAALTRVSG 116
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 29.2 bits (66), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 11 LSGTLVAIMGASGAGKSTLLAA 32
L + + G +GAGKST +AA
Sbjct: 25 LDELVTTLSGGNGAGKSTTMAA 46
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 26.8 bits (60), Expect = 3.6
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 14/58 (24%)
Query: 130 LSGGERKRLSFATELL-------------TDPALLLCDEPTTGLDSFSASKLIRMMRE 174
LSGGE K++ L P L+ DE LD + L+ ++RE
Sbjct: 23 LSGGE-KQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 29.0 bits (65), Expect = 3.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL 37
+VAI G +G GKS++ AL+Q L
Sbjct: 1 MIIVAIDGPAGVGKSSVSRALAQYL 25
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is
a important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 27.9 bits (63), Expect = 3.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+ ++G GAGK+T+ L++ L
Sbjct: 2 IVLIGMMGAGKTTVGRLLAKAL 23
>gnl|CDD|234838 PRK00784, PRK00784, cobyric acid synthase; Provisional.
Length = 488
Score = 28.9 bits (66), Expect = 3.8
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
Query: 17 AIM--G-ASGAGKSTLLAAL 33
A+M G AS AGKSTL+A L
Sbjct: 4 ALMVQGTASDAGKSTLVAGL 23
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 28.9 bits (65), Expect = 3.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 117 TRIGSSSITQ--KVVLSGGERKRLSFATELLTDPALLLCDEPTT 158
R G S Q VLSGGE++R++ A P + DE T+
Sbjct: 568 EREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611
>gnl|CDD|184311 PRK13764, PRK13764, ATPase; Provisional.
Length = 602
Score = 28.7 bits (65), Expect = 3.8
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAAL 33
G L+A GA GAGKST AL
Sbjct: 259 GILIA--GAPGAGKSTFAQAL 277
>gnl|CDD|238551 cd01131, PilT, Pilus retraction ATPase PilT. PilT is a nucleotide
binding protein responsible for the retraction of type
IV pili, likely by pili disassembly. This retraction
provides the force required for travel of bacteria in
low water environments by a mechanism known as
twitching motility.
Length = 198
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 15 LVAIMGASGAGKSTLLAAL 33
LV + G +G+GKST LAA+
Sbjct: 3 LVLVTGPTGSGKSTTLAAM 21
>gnl|CDD|224410 COG1493, HprK, Serine kinase of the HPr protein, regulates
carbohydrate metabolism [Signal transduction
mechanisms].
Length = 308
Score = 28.4 bits (64), Expect = 3.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 13 GTLVAIMGASGAGKSTL-LAALSQ--RL-PDDCII 43
G V I G SGAGKS L L + + RL DD +
Sbjct: 145 GVGVLITGPSGAGKSELALELIKRGHRLVADDAVE 179
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase.
Members of this protein family are the bacterial
polynucleotide kinase-phosphatase (Pnkp) whose genes
occur paired with genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis
is that the combination of Pnkp (RNA repair) and Hen1
(RNA modification) serves to first repair RNA damage
from ribotoxins and then perform a modification that
prevents the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 28.8 bits (65), Expect = 3.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 15 LVAIMGASGAGKST 28
LV ++GASG+GKST
Sbjct: 10 LVVLVGASGSGKST 23
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 28.0 bits (63), Expect = 3.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 19 MGASGAGKSTLLAALSQ 35
+G SG GK+TL AL+
Sbjct: 7 IGRSGCGKTTLTQALNG 23
>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 28.7 bits (65), Expect = 4.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 16 VAIMGASGAGKSTLLAAL 33
VAI+G GKSTLL AL
Sbjct: 9 VAIIGRPNVGKSTLLNAL 26
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 28.7 bits (64), Expect = 4.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 124 ITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
I Q V S G + RL FA + +P +L+ DE + D K + M E Q K
Sbjct: 137 IYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGK 194
>gnl|CDD|237536 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 28.7 bits (65), Expect = 4.0
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 14 TLVAIMGASGAGKSTLLAAL 33
TLV G +GAGKS LLA +
Sbjct: 444 TLVV--GPTGAGKSVLLALM 461
>gnl|CDD|206726 cd04163, Era, E. coli Ras-like protein (Era) is a multifunctional
GTPase. Era (E. coli Ras-like protein) is a
multifunctional GTPase found in all bacteria except
some eubacteria. It binds to the 16S ribosomal RNA
(rRNA) of the 30S subunit and appears to play a role in
the assembly of the 30S subunit, possibly by
chaperoning the 16S rRNA. It also contacts several
assembly elements of the 30S subunit. Era couples cell
growth with cytokinesis and plays a role in cell
division and energy metabolism. Homologs have also been
found in eukaryotes. Era contains two domains: the
N-terminal GTPase domain and a C-terminal domain KH
domain that is critical for RNA binding. Both domains
are important for Era function. Era is functionally
able to compensate for deletion of RbfA, a cold-shock
adaptation protein that is required for efficient
processing of the 16S rRNA.
Length = 168
Score = 27.8 bits (63), Expect = 4.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 16 VAIMGASGAGKSTLLAAL 33
VAI+G GKSTLL AL
Sbjct: 6 VAIIGRPNVGKSTLLNAL 23
>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein
YsxC/EngB. Members of this protein family are a GTPase
associated with ribosome biogenesis, typified by YsxC
from Bacillus subutilis. The family is widely but not
universally distributed among bacteria. Members
commonly are called EngB based on homology to EngA, one
of several other GTPases of ribosome biogenesis.
Cutoffs as set find essentially all bacterial members,
but also identify large numbers of eukaryotic (probably
organellar) sequences. This protein is found in about
80 percent of bacterial genomes [Protein synthesis,
Other].
Length = 178
Score = 28.2 bits (64), Expect = 4.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
+A G S GKS+L+ AL+ R
Sbjct: 21 IAFAGRSNVGKSSLINALTNR 41
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases.
Length = 151
Score = 27.9 bits (62), Expect = 4.1
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD----CIIDGDIRVNGKPVEGKFRS 60
+ + G G GK+TL A++ L ++ + G V F
Sbjct: 22 LLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGH 70
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 27.9 bits (63), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 12 SGTLVAIM-GASGAGKSTLLAALSQ 35
SG VA++ G +G GK+T L A +
Sbjct: 16 SGDRVAVVQGPAGTGKTTSLKAARE 40
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily. Many of the proteins in this family
are conjugative transfer proteins.
Length = 316
Score = 28.5 bits (64), Expect = 4.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 16 VAIMGASGAGKSTLLAAL----SQRLPDDCIID 44
+ I+G SG+GKSTLL L R +ID
Sbjct: 4 MLIVGPSGSGKSTLLKLLALRLLARGGRVIVID 36
>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 28.4 bits (64), Expect = 4.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 16 VAIMGASGAGKSTLLAAL 33
I G +G+GK+TLL L
Sbjct: 437 TLIFGPTGSGKTTLLNFL 454
>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated.
Length = 582
Score = 28.4 bits (64), Expect = 4.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 10 ALSGTLVAIMGA-SGAGKSTLLA 31
SG LV + GA SG G+ T LA
Sbjct: 312 PFSGKLVVVTGAGSGIGRETALA 334
>gnl|CDD|131085 TIGR02030, BchI-ChlI, magnesium chelatase ATPase subunit I. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 337
Score = 28.3 bits (63), Expect = 4.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
V +MG G GKST + AL+ LP+ + G
Sbjct: 28 VMVMGDRGTGKSTAVRALAALLPEIKAVAGC 58
>gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed.
Length = 196
Score = 27.8 bits (63), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
+A G S GKS+L+ AL+ R
Sbjct: 27 IAFAGRSNVGKSSLINALTNR 47
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 28.0 bits (63), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+ + G GAGKSTL L++ L
Sbjct: 2 IVVEGNIGAGKSTLAKELAEHL 23
>gnl|CDD|213968 TIGR04355, HprK_rel_B, HprK-related kinase B. Members of this
protein family resemble (and often are misannotated as)
HprK, the serine kinase/phosphatase of the
phosphocarrier protein HPr. However, members do not
occur with an HPr homolog, but instead as part of a
distinctive gene cassette of unknown function.
Length = 351
Score = 28.5 bits (64), Expect = 4.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 8 GAALSGTLVAIMGASGAGKSTL 29
G A +G +A+ G SG GKSTL
Sbjct: 151 GVAHNGRGLALAGFSGMGKSTL 172
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 28.5 bits (64), Expect = 4.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 17 AIMGASGAGKSTLLAAL 33
I+G +GAGK+ LL+ L
Sbjct: 440 LIIGPTGAGKTVLLSFL 456
>gnl|CDD|234363 TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood
CpaE-like protein. Members of this protein family
belong to the MinD/ParA family of P-loop NTPases, and in
particular show homology to the CpaE family of pilus
assembly proteins (see PMID:12370432). Nearly all
members are found, not only in a gene context consistent
with pilus biogenesis or a pilus-like secretion
apparatus, but also near a DEAD/DEAH-box helicase,
suggesting an involvement in DNA transfer activity. The
model describes a clade restricted to the
Actinobacteria.
Length = 322
Score = 28.5 bits (64), Expect = 4.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 12 SGTLVAIMGAS-GAGKSTLLAALSQRLPDDCI----IDGD 46
G +VA++G GAG STL AAL+ + +D D
Sbjct: 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDAD 131
>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain.
This domain contains a P-loop motif, also found in
several other families such as pfam00071, pfam00025 and
pfam00063. Elongation factor Tu consists of three
structural domains, this plus two C-terminal beta
barrel domains.
Length = 184
Score = 27.8 bits (63), Expect = 4.9
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD 40
+ I+G GK+TL AL
Sbjct: 6 IGIIGHVDHGKTTLTDALLYVTGAI 30
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 28.4 bits (64), Expect = 4.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54
G + I +G GKSTLL +++ D + I G+ V
Sbjct: 145 GQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREV 186
>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer
from ATP to uridine or cytidine to yield UMP or CMP. In
the primidine nucleotide-salvage pathway, this enzyme
combined with nucleoside diphosphate kinases further
phosphorylates UMP and CMP to form UTP and CTP. This
kinase also catalyzes the phosphorylation of several
cytotoxic ribonucleoside analogs such as
5-flurrouridine and cyclopentenyl-cytidine.
Length = 198
Score = 27.9 bits (63), Expect = 5.0
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI 42
++ I G SG+GK+T+ + ++L + +
Sbjct: 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKV 28
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate
transferase; Reviewed.
Length = 307
Score = 28.2 bits (64), Expect = 5.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLP 38
++ I+G + +GK+ L L++RL
Sbjct: 5 KVIVIVGPTASGKTALAIELAKRLN 29
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 27.1 bits (61), Expect = 5.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCII 43
+ I G GK+TLL + L + I+
Sbjct: 5 IVITGPRQVGKTTLLLQFLKELLSENIL 32
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the
ATP synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor
Rho.
Length = 213
Score = 27.8 bits (63), Expect = 5.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCI 42
+ I G SG GK+ LL +++ D +
Sbjct: 18 IGIFGGSGTGKTVLLGMIARNAKADVV 44
>gnl|CDD|240457 cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryanodine receptor
(RyR). This SPRY domain is the first of three
structural repeats in all three isoforms of the
ryanodine receptor (RyR), which are the major Ca2+
release channels in the membranes of sarcoplasmic
reticulum (SR). There are three RyR genes in mammals;
the skeletal RyR1, the cardiac RyR2 and the brain RyR3.
The three SPRY domains are located in the N-terminal
part of the cytoplasmic region of the RyRs, but no
specific function has been found for this first SPRY
domain of the RyRs.
Length = 151
Score = 27.3 bits (61), Expect = 5.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 24 AGKSTLLAALSQRL--PDD---CIIDGDI-----RVNGKPVEGKFR 59
G+S + + +Q L D C +D + RVNG+PV+G F
Sbjct: 81 GGRSRRVTSGTQHLLKKGDVVGCCLDLSVPSISFRVNGRPVQGMFE 126
>gnl|CDD|183452 PRK12337, PRK12337, 2-phosphoglycerate kinase; Provisional.
Length = 475
Score = 28.2 bits (63), Expect = 5.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
V I G SG GKS L +AL+ RL
Sbjct: 258 VLIGGVSGVGKSVLASALAYRL 279
>gnl|CDD|224533 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide
transport and metabolism].
Length = 179
Score = 27.7 bits (62), Expect = 5.9
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDC-----IIDGDIRVNGK 52
+ I G G GK+TL+ ++++L + I ++R GK
Sbjct: 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGK 49
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 217
Score = 27.8 bits (62), Expect = 5.9
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+AI G SGAGKST+ A++++L
Sbjct: 5 IAIDGPSGAGKSTVAKAVAEKL 26
>gnl|CDD|225586 COG3044, COG3044, Predicted ATPase of the ABC class [General
function prediction only].
Length = 554
Score = 28.3 bits (63), Expect = 6.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 3 ELEL-TGAALSGT-----LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV 49
E+EL G + G + I G + GK+TLL A+ + + + DG RV
Sbjct: 226 EIELPNGKEVVGMGIPQGITLITGGNFHGKTTLLTAIERGVDNHIPGDGRERV 278
>gnl|CDD|237728 PRK14490, PRK14490, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MobA;
Provisional.
Length = 369
Score = 28.1 bits (63), Expect = 6.1
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+A G SG+GK+TL+ AL +RL
Sbjct: 8 IAFCGYSGSGKTTLITALVRRL 29
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 27.9 bits (62), Expect = 6.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54
G V +M SG GKS LL +++ D ++ G I G+ V
Sbjct: 155 GQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREV 196
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 28.1 bits (63), Expect = 6.6
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 18 IMGASGAGKSTLLA 31
++G G+GK+TLL
Sbjct: 116 VIGPPGSGKTTLLQ 129
>gnl|CDD|225364 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 28.0 bits (63), Expect = 6.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 15 LVAIMGASGAGKSTLLAAL 33
L+ + G +G+GKST LAA+
Sbjct: 127 LILVTGPTGSGKSTTLAAM 145
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family
are found in a variety of single stranded RNA viruses.
Length = 105
Score = 26.4 bits (59), Expect = 6.8
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 20 GASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF 58
G G GKSTL L++ L + V + + F
Sbjct: 5 GPPGCGKSTLAKYLARALLKHLGLPKKDSVYSRNPDDDF 43
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 28.0 bits (63), Expect = 6.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQ 35
G + I SG GKSTLLA L++
Sbjct: 165 GQRIGIFAGSGVGKSTLLAMLAR 187
>gnl|CDD|237066 PRK12338, PRK12338, hypothetical protein; Provisional.
Length = 319
Score = 27.8 bits (62), Expect = 7.0
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD-IR 48
++ I ASG GKST+ + L++ L +I+ D IR
Sbjct: 5 YVILIGSASGIGKSTIASELARTLNIKHLIETDFIR 40
>gnl|CDD|215451 PLN02840, PLN02840, tRNA dimethylallyltransferase.
Length = 421
Score = 27.9 bits (62), Expect = 7.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
++ I G +GAGKS L L++RL + II D
Sbjct: 22 KVIVISGPTGAGKSRLALELAKRLNGE-IISAD 53
>gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional.
Length = 597
Score = 28.0 bits (63), Expect = 7.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 33 LSQRLPDDCIIDGD 46
LS RLPD+ I+ D
Sbjct: 375 LSPRLPDNAILTAD 388
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 28.0 bits (62), Expect = 7.3
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 13 GTLVAIMGASGAGKSTLLAALS 34
G V I A G GKSTLLA L
Sbjct: 155 GQRVGIFSAPGVGKSTLLAMLC 176
>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate
dehydratase/shikimate dehydrogenase.
Length = 529
Score = 27.8 bits (62), Expect = 7.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 8 GAALSGTLVAIMGASGAGKS 27
G+ L+G L ++GA GAGK+
Sbjct: 374 GSPLAGKLFVVIGAGGAGKA 393
>gnl|CDD|233406 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation [Cell
envelope, Surface structures, Cellular processes,
Chemotaxis and motility].
Length = 343
Score = 27.7 bits (62), Expect = 7.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 15 LVAIMGASGAGKSTLLAAL 33
L+ + G +G+GKST LA++
Sbjct: 124 LILVTGPTGSGKSTTLASM 142
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase.
The Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show
sequence conservation in the region between the Walker
A and B motifs (G1 and G3 box motifs), to the exclusion
of other GTPases. TrmE is ubiquitous in bacteria and is
a widespread mitochondrial protein in eukaryotes, but
is absent from archaea. The yeast member of TrmE
family, MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein
involved in cell division control. Era is characterized
by a distinct derivative of the KH domain (the
pseudo-KH domain) which is located C-terminal to the
GTPase domain. EngA and its orthologs are composed of
two GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct
GTPases, gave rise to this family.
Length = 161
Score = 27.2 bits (61), Expect = 7.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 17 AIMGASGAGKSTLLAALS 34
AI G GKS+LL AL
Sbjct: 1 AIFGRPNVGKSSLLNALL 18
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 27.4 bits (61), Expect = 7.8
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 21/122 (17%)
Query: 95 AYQRIALINSLLIELGLMNSQHTRI-----GSSSITQKVVLSGGERKRLSFATELLTDPA 149
A Q+I+ + EL + +Q +I S+S T ++ S S + ++ P
Sbjct: 120 ALQKISALED---ELAFLRAQIAKIVAAQEQSNSTTSDLLSSDESVPSSSTTSFPISPPT 176
Query: 150 LLLCDE-----------PTTGL-DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 197
E P L S SA LI+ + S KT L S E +M
Sbjct: 177 EEPVLEVPPPPPPPPPPPPPSLQQSTSAIDLIKERKGQRSAAGKT-LVLSKPKSPEFPNM 235
Query: 198 FD 199
D
Sbjct: 236 LD 237
>gnl|CDD|224031 COG1106, COG1106, Predicted ATPases [General function prediction
only].
Length = 371
Score = 27.5 bits (61), Expect = 8.1
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 17 AIMGASGAGKSTLLAALS 34
I GA+GAGKS LL AL
Sbjct: 26 IIYGANGAGKSNLLEALY 43
>gnl|CDD|236515 PRK09435, PRK09435, membrane ATPase/protein kinase; Provisional.
Length = 332
Score = 27.5 bits (62), Expect = 8.4
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL 37
L TG AL + I G G GKST + AL L
Sbjct: 50 LPHTGNALR---IGITGVPGVGKSTFIEALGMHL 80
>gnl|CDD|236016 PRK07424, PRK07424, bifunctional sterol desaturase/short chain
dehydrogenase; Validated.
Length = 406
Score = 27.7 bits (62), Expect = 8.5
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 6 LTGAALS--GTLVAIMGASGAGKSTLLAALSQ 35
L G ALS G VA+ GASG LL L Q
Sbjct: 169 LMGTALSLKGKTVAVTGASGTLGQALLKELHQ 200
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 27.9 bits (62), Expect = 8.7
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 116 HTRIGS-SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMR 173
IG SI Q + G K +S T+ +L+L DE G D S L I ++
Sbjct: 370 FADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILE 429
Query: 174 ELTSQRKKTVLCTIHQP 190
L Q + ++ T ++
Sbjct: 430 YLLKQNAQVLITTHYKE 446
>gnl|CDD|182479 PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB;
Provisional.
Length = 290
Score = 27.5 bits (61), Expect = 8.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 12/44 (27%)
Query: 23 GAGKSTLLAALSQRLPDD--C-IIDGD---------IRVNGKPV 54
G+GK+TLL RL D C +I+GD IR G P
Sbjct: 114 GSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPA 157
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 27.4 bits (61), Expect = 9.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
+LL DEP L +LIR +++L + K ++ T H P
Sbjct: 277 ILLIDEPEAHLHPTLQKELIRFLKKLAKKNNKQIIITTHSP 317
>gnl|CDD|213965 TIGR04352, HprK_rel_A, HprK-related kinase A. A number of protein
families resemble HPr kinase (see TIGR00679) but do not
belong to that system. They include this family, which
appears instead to be the marker for a different type of
gene neighborhood, in which one of the conserved
neighboring proteins resembles (but is distinct from)
PqqD.
Length = 280
Score = 27.3 bits (61), Expect = 9.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 20 GASGAGKSTLLAALSQR 36
G+GKSTL AAL+ R
Sbjct: 115 APPGSGKSTLCAALALR 131
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 27.2 bits (61), Expect = 9.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
L+ I G + +GK+ L AL++RL + II D
Sbjct: 4 KLIVIAGPTASGKTALAIALAKRLGGE-IISLD 35
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts
late in the biosynthesis
(TIGR02257/TIGR01650/TIGR01651). A number of genomes
(actinobacteria, cyanobacteria, betaproteobacteria and
pseudomonads) which apparently biosynthesize B12,
encode a cobN gene but are demonstrably lacking cobS
and cobT. These genomes do, however contain a homolog
(modelled here) of the magnesium chelatase subunits
BchI/BchD family. Aside from the cyanobacteria (which
have a separate magnesium chelatase trimer), these
species do not make chlorins, so do not have any use
for a magnesium chelatase. Furthermore, in nearly all
cases the members of this family are proximal to either
CobN itself or other genes involved in cobalt transport
or B12 biosynthesis.
Length = 633
Score = 27.7 bits (62), Expect = 9.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDG 45
V I G G KST L+ LP ++ G
Sbjct: 28 VLIRGEKGTAKSTAARGLAALLPPIDVVAG 57
>gnl|CDD|225194 COG2312, COG2312, Erythromycin esterase homolog [General function
prediction only].
Length = 405
Score = 27.4 bits (61), Expect = 9.4
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 138 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
L LLTD ++L EP+ G F A K RM R L
Sbjct: 35 LEALATLLTDARIVLLGEPSHGTGEFFAFK-ARMFRAL 71
>gnl|CDD|237045 PRK12296, obgE, GTPase CgtA; Reviewed.
Length = 500
Score = 27.5 bits (62), Expect = 9.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 16 VAIMGASGAGKSTLLAALS 34
V ++G AGKS+L++ALS
Sbjct: 162 VGLVGFPSAGKSSLISALS 180
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 27.6 bits (62), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+ I SG GKSTLL +
Sbjct: 166 IGIFAGSGVGKSTLLGMI 183
>gnl|CDD|233448 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase, NadR type. The NadR protein of E.
coli and closely related bacteria is both enzyme and
regulatory protein. The first 60 or so amino acids,
N-terminal to the region covered by this model, is a
DNA-binding helix-turn-helix domain (pfam01381)
responsible for repressing the nadAB genes of NAD de
novo biosynthesis. The NadR homologs in Mycobacterium
tuberculosis, Haemophilus influenzae, and others appear
to lack the repressor domain. NadR has recently been
shown to act as an enzyme of the salvage pathway of NAD
biosynthesis, nicotinamide-nucleotide
adenylyltransferase; members of this family are presumed
to share this activity. E. coli NadR has also been found
to regulate the import of its substrate, nicotinamide
ribonucleotide, but it is not known if the other members
of this model share that activity.
Length = 325
Score = 27.5 bits (61), Expect = 9.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
VAI+G GKSTL+ L+
Sbjct: 165 VAILGGESTGKSTLVNKLAAVF 186
>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed.
Length = 335
Score = 27.3 bits (62), Expect = 9.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 16 VAIMGASGAGKSTLLAALS 34
V ++G AGKSTL++A+S
Sbjct: 161 VGLVGLPNAGKSTLISAVS 179
>gnl|CDD|235153 PRK03731, aroL, shikimate kinase II; Reviewed.
Length = 171
Score = 26.8 bits (60), Expect = 9.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDIRV 49
++GA G GK+T+ AL+Q L +D D +
Sbjct: 7 LVGARGCGKTTVGMALAQALGYRF-VDTDQWL 37
>gnl|CDD|235450 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
Length = 288
Score = 27.4 bits (62), Expect = 9.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 15 LVAIMGASGAGKSTLLAAL 33
LV + G SGAGKS L AL
Sbjct: 8 LVIVTGLSGAGKSVALRAL 26
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.387
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,710,843
Number of extensions: 1421257
Number of successful extensions: 3040
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2722
Number of HSP's successfully gapped: 766
Length of query: 290
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 194
Effective length of database: 6,679,618
Effective search space: 1295845892
Effective search space used: 1295845892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)