RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2520
(290 letters)
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 107 bits (271), Expect = 1e-28
Identities = 42/192 (21%), Positives = 83/192 (43%), Gaps = 23/192 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G +V G +G GK+TLL +S L G+I NG P+ K + F+ + +
Sbjct: 35 GNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT-KVKGKIFFLPEEIIVP 90
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
++V ++L +A L + K I L + +++ ++G LS
Sbjct: 91 RKISVEDYLKAVASLYGVKVNKNE-----IMDALESVEVLD-LKKKLGE--------LSQ 136
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G +R+ A+ LL + + + D+P +D S K+++ + E+ ++ ++ +
Sbjct: 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS-----R 191
Query: 193 ELIDMFDKIILL 204
E + D L
Sbjct: 192 EELSYCDVNENL 203
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 105 bits (264), Expect = 6e-27
Identities = 54/220 (24%), Positives = 90/220 (40%), Gaps = 26/220 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF-------RSACGFM 65
G + G +GAGK+TLL L+ P G + + GK GK R GF+
Sbjct: 47 GDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMP-GKVGYSAETVRQHIGFV 102
Query: 66 YQ--HDLFSPSLTVYEHLY--FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
+ F V + + + + + + R + LL +G+ IG
Sbjct: 103 SHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAHQLLKLVGMSAKAQQYIGY 161
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LS GE++R+ A L+ P +L+ DEP GLD + L+ ++ L+
Sbjct: 162 --------LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPT 213
Query: 182 -TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
++ H E+ F KI+LL D ++ G+ + L
Sbjct: 214 LAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDILT 252
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 102 bits (257), Expect = 4e-26
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE---GKFRSACGFMYQHD 69
G + ++G +GAGK+T L +S + G + V GK V + R ++ +
Sbjct: 41 GEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEA 97
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
++ E+L F+A + + ++ GL R+ +
Sbjct: 98 GAYRNMQGIEYLRFVAGF---YASSSSEIEEMVERATEIAGLGEKIKDRVST-------- 146
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
S G ++L A L+ +P L + DEPT+GLD +A ++ +++++ SQ T+L + H
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA-SQEGLTILVSSH 204
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 94.7 bits (236), Expect = 4e-23
Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 28/207 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH-DLF 71
G V I+G +G+GK+TLL A+S LP G+I +NG V K R+ + + +
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLLPYS----GNIFINGMEVR-KIRNYIRYSTNLPEAY 84
Query: 72 SPSLTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
+TV + +Y L LDR L +L L L R + + L
Sbjct: 85 EIGVTVNDIVYLYEELKGLDRD--------LFLEMLKALKLGEEILRR----KLYK---L 129
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
S G+ + + L + P ++ DEP +D+ + R ++E K + H+
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY----GKEGILVTHE- 184
Query: 191 SSELIDMFDKIILL-ADSRTAFIGSKD 216
L + +R S
Sbjct: 185 LDMLNLYKEYKAYFLVGNRLQGPISVS 211
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 90.3 bits (225), Expect = 1e-21
Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 35/226 (15%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA---- 61
L+G +G ++ ++G +GAGKSTLLA ++ G I+ G+P+E +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALH 74
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++ Q + V+ L L + R L+N + L L +
Sbjct: 75 RAYLSQQQTPPFATPVWH------YLTLHQH--DKTRTELLNDVAGALALDDKLGRSTNQ 126
Query: 122 SSITQKVVLSGGERKRLSFA-------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
LSGGE +R+ A + LLL DEP LD S L +++
Sbjct: 127 --------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 175 LTSQRKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGSKDAAL 219
L+ Q+ ++ + H + + LL + G ++ L
Sbjct: 179 LS-QQGLAIVMSSHDLN--HTLRHAHRAWLLKGGKMLASGRREEVL 221
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 92.0 bits (229), Expect = 4e-21
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 27/169 (15%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
+ I+G +G GK+T + L+ +G + + + Q+
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDLTVA---------YKPQYIKAEYEG 432
Query: 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 135
TVYE L + KL+ LL LG+++ + LSGGE
Sbjct: 433 TVYELLSKIDSSKLNSN-------FYKTELLKPLGIIDLYDRNVED--------LSGGEL 477
Query: 136 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+R++ A LL D + L DEP+ LD + R +R L + +KT L
Sbjct: 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
Score = 82.4 bits (204), Expect = 8e-18
Identities = 37/183 (20%), Positives = 70/183 (38%), Gaps = 28/183 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI---IDGDIRVNGKP------VEGKFRSACG 63
G +V I+G +G GK+T + L+ +L + D + + ++
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 176
Query: 64 FM-YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGS 121
+ + + +L ++V + ++ L +E +
Sbjct: 177 RPVVKPQYVD----LLPKAVKGKVRELLKKVDEVGKFEEVVKELELE---------NVLD 223
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
+ Q LSGGE +R++ A LL DEP++ LD K+ R++R L + K
Sbjct: 224 RELHQ---LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL-ANEGK 279
Query: 182 TVL 184
VL
Sbjct: 280 AVL 282
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 87.9 bits (219), Expect = 5e-21
Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 41/210 (19%)
Query: 13 GTLVAIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRS-A 61
G V+I+GASG+GKSTL L L P + G + + GK V+ R+
Sbjct: 30 GEFVSIIGASGSGKSTLLYILGLLDA--PTE----GKVFLEGKEVDYTNEKELSLLRNRK 83
Query: 62 CGFMYQ-HDLFSPSLTVYEH----LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
GF++Q H L P LT E+ + M K + + + LL ELGL +
Sbjct: 84 LGFVFQFHYLI-PELTALENVIVPMLKMGKPKKEAKERGEY-------LLSELGLGDKLS 135
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
+ LSGGE++R++ A L +P LL DEPT LDS + +++ + ++
Sbjct: 136 RKPYE--------LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 177 SQRKKTVLCTIHQPSSELIDMFDKIILLAD 206
V+ T H+ EL ++ + + + D
Sbjct: 188 EGGTSIVMVT-HER--ELAELTHRTLEMKD 214
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 90.9 bits (226), Expect = 8e-21
Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 25/173 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G ++ I+G +G GK+T L + D +G + + + + Q
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL--------SYKPQRIFP 341
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
+ TV + L+ + + L L + + LS
Sbjct: 342 NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND--------LS 387
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
GGE ++L A L + L + D+P++ LD + + ++ +T +RK
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
Score = 85.5 bits (212), Expect = 7e-19
Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 23/185 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
T++ ++G +G GK+T+L L+ + + D + +V V +FR + Y +L+S
Sbjct: 25 NTILGVLGKNGVGKTTVLKILAGEIIPN-FGDPNSKVGKDEVLKRFRGKEIYNYFKELYS 83
Query: 73 PSLTVYEH---------LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
L + + ++ ++ + + LL L N
Sbjct: 84 NELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNK--------D 135
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGG +RL A LL + + + D+P++ LD + + +REL + K V
Sbjct: 136 ANI---LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL--LKNKYV 190
Query: 184 LCTIH 188
+ H
Sbjct: 191 IVVDH 195
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 86.8 bits (216), Expect = 2e-20
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 13 GTLVAIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSAC 62
G V+IMG SG+GKST+ + L + P + G++ ++ K R
Sbjct: 31 GEFVSIMGPSGSGKSTMLNIIGCLDK--PTE----GEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 63 -GFMYQ--HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
GF++Q + + P LT E++ + K + +R L L R
Sbjct: 85 IGFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE----RF 138
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
+ Q LSGG+++R++ A L +P ++L D+PT LDS + K+++++++L +
Sbjct: 139 ANHKPNQ---LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195
Query: 180 KKTVLCTIHQPSSELIDMFDKIILLAD 206
KTV+ H + ++II L D
Sbjct: 196 GKTVVVVTHDI--NVARFGERIIYLKD 220
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 83.0 bits (206), Expect = 5e-19
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 26/203 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G ++A++G +G GKSTLL L I G I V GF+ Q
Sbjct: 30 KGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEVYQS---------IGFVPQFFSS 77
Query: 72 SPSLTVYEHLYFM---ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
+ +V + + M + + K++ + L L L + S
Sbjct: 78 PFAYSVLD-IVLMGRSTHINTFAKPKSHDY-QVAMQALDYLNLTHLAKREFTS------- 128
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+R+ + A + ++ L+L DEPT+ LD + ++ ++ +L + TV+ T H
Sbjct: 129 -LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
Query: 189 QPSSELIDMFDKIILLADSRTAF 211
QP+ + + +K +LL F
Sbjct: 188 QPNQVV-AIANKTLLLNKQNFKF 209
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 83.4 bits (207), Expect = 6e-19
Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 40/219 (18%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVEGK------FRSACGF 64
G + AI+G +G GKSTL + L P G I + KP++ R + G
Sbjct: 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSS----GRILFDNKPIDYSRKGIMKLRESIGI 88
Query: 65 MYQ---HDLFSPSLTVYEHLYF------MALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
++Q + LFS +VY+ + F + ++ +RV L G+
Sbjct: 89 VFQDPDNQLFSA--SVYQDVSFGAVNMKLPEDEIRKRVDNA---------LKRTGI---- 133
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+ LS G++KR++ A L+ +P +L+ DEPT GLD S++++++ E+
Sbjct: 134 -EHLKDKPTHC---LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189
Query: 176 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
+ T++ H + D + ++ + R G+
Sbjct: 190 QKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGN 227
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 84.3 bits (209), Expect = 2e-18
Identities = 41/213 (19%), Positives = 75/213 (35%), Gaps = 28/213 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD-CIIDGDIRV-------NGKPVEGKFRSACG- 63
G ++ ++G +G GKST L L+ + + D G ++ F
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 64 -----FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
Q+ P LLKL + + + L L
Sbjct: 163 DIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQL-----EN 213
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+ I + LSGGE +R + + + + + DEP++ LD +++R L
Sbjct: 214 VLKRDIEK---LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL-A 269
Query: 179 RKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211
K V+C H S L + D + ++ + +
Sbjct: 270 PTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301
Score = 83.9 bits (208), Expect = 2e-18
Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 29/174 (16%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
++ +MG +G GK+TL+ L+ L PD+ + V+ KP Q
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKP-------------QKIA 423
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
TV + + + + ++ L + + + L
Sbjct: 424 PKFPGTVRQLFF-------KKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQH--------L 468
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
SGGE +R++ L + L DEP+ LDS +++R KKT
Sbjct: 469 SGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 82.7 bits (205), Expect = 5e-18
Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 27/173 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G ++ I+G +G GK+T + L+ +G I + + Q+
Sbjct: 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA---------YKPQYIKA 358
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
TVYE L LL LG+++ + LS
Sbjct: 359 DYEGTVYELL-------SKIDASKLNSNFYKTELLKPLGIIDLYDREVNE--------LS 403
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
GGE +R++ A LL D + L DEP+ LD + R +R L + +KT L
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
Score = 72.7 bits (179), Expect = 1e-14
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 30/185 (16%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPV------EGKFRSAC 62
G +V I+G +G GKST + L+ +L D + K ++
Sbjct: 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105
Query: 63 GFM-YQHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
+ P + + + +++ + + ++L
Sbjct: 106 IRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL------------- 152
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
I LSGGE +R++ A LL + DEP++ LD R +R L S+
Sbjct: 153 -EREIQH---LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL-SEE 207
Query: 180 KKTVL 184
K+VL
Sbjct: 208 GKSVL 212
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 78.4 bits (194), Expect = 3e-17
Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 31/225 (13%)
Query: 13 GTLVAIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNGKPVEGK-FRSACGFMYQ- 67
G + + G +G+GKSTL +A L P GD+ +G+ +G R G +Q
Sbjct: 33 GECLLVAGNTGSGKSTLLQIVAGL--IEPTS----GDVLYDGERKKGYEIRRNIGIAFQY 86
Query: 68 --HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
F+ V++ + F A+ + + +GL S
Sbjct: 87 PEDQFFAE--RVFDEVAF-AVKNFYPDRDPVPLV---KKAMEFVGL--------DFDSFK 132
Query: 126 QKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+V LSGGE++R++ A+ ++ +P +L+ DEP GLD + L+R++ + KTV
Sbjct: 133 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTV 191
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYP 228
+ H +I+ D++++L + F G++ L + + +
Sbjct: 192 ILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFT 235
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 71.6 bits (175), Expect = 4e-14
Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 33/151 (21%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
I G +G GKSTL+ A++ D + R ++ +
Sbjct: 461 ARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT-------------VYVEHDIDGT 507
Query: 73 PS-LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVVL 130
S +V + ++ I LIE G I + L
Sbjct: 508 HSDTSVLDFVF----------ESGVGTKEAIKDKLIEFGFTDEMIAMPISA--------L 549
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLD 161
SGG + +L+ A +L + +LL DEPT LD
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 53.9 bits (129), Expect = 2e-08
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 102 INSLLIELGLM--NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159
I LGL H+RI LSGG++ +L A P L++ DEPT
Sbjct: 880 IEEHCSMLGLDPEIVSHSRIRG--------LSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSR 208
LD S L + ++E + V+ H S+E + +++ + D R
Sbjct: 932 LDRDSLGALSKALKEF----EGGVIIITH--SAEFTKNLTEEVWAVKDGR 975
Score = 33.1 bits (75), Expect = 0.13
Identities = 26/198 (13%), Positives = 59/198 (29%), Gaps = 30/198 (15%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
+A++G +GAGKSTL+ L+ L G++ + + QH
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHENCRIAYIK-------QHAFAHIE- 750
Query: 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 135
HL + R + + ++ ++ +++ K+ G
Sbjct: 751 ---SHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEA--------MNKIFKIEGTP 799
Query: 136 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 195
+R++ + + + + P EL+
Sbjct: 800 RRIAGIHSRRKFKNTYEYECSF--------LLGENIGMKSERWVPMMSVDNAWIPRGELV 851
Query: 196 DMFDKIILLADSRTAFIG 213
+ K++ D + A
Sbjct: 852 ESHSKMVAEVDMKEALAS 869
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 68.8 bits (169), Expect = 1e-13
Identities = 59/216 (27%), Positives = 110/216 (50%), Gaps = 26/216 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G +A++G SGAGKST+L L R D I G IR++G+ + RS G + Q
Sbjct: 80 GQTLALVGPSGAGKSTILRLLF-RFYD--ISSGCIRIDGQDISQVTQASLRSHIGVVPQ- 135
Query: 69 D--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSI 124
D LF+ T+ +++ + + + V+A + A I+ ++ G T++G
Sbjct: 136 DTVLFND--TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY----RTQVGE--- 186
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ + LSGGE++R++ A +L P ++L DE T+ LD+ + + + ++ + R T +
Sbjct: 187 -RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR--TTI 243
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ + D+I+++ D G +A L+
Sbjct: 244 VVAHRLST--VVNADQILVIKDGCIVERGRHEALLS 277
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 68.9 bits (169), Expect = 2e-13
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 35/191 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL------PDDCIIDGDIRVNGKPVEG-------KFR 59
G + ++GASGAGKSTL+ R P + G + V+G+ + K R
Sbjct: 54 GQIYGVIGASGAGKSTLI-----RCVNLLERPTE----GSVLVDGQELTTLSESELTKAR 104
Query: 60 SACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
G ++QH +L S S TV+ ++ L+LD K + + LL +GL + +
Sbjct: 105 RQIGMIFQHFNLLS-SRTVFGNVAL--PLELDNTPKD-EVKRRVTELLSLVGLGDKHDSY 160
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+ LSGG+++R++ A L ++P +LLCD+ T+ LD + ++ +++++ +
Sbjct: 161 PSN--------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 179 RKKTVLCTIHQ 189
T+L H+
Sbjct: 213 LGLTILLITHE 223
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 66.0 bits (162), Expect = 6e-13
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 27/217 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
SGT A++G +G+GKST+ A L R D +GDI++ GK V RS G + Q
Sbjct: 45 SGTTCALVGHTGSGKSTI-AKLLYRFYD---AEGDIKIGGKNVNKYNRNSIRSIIGIVPQ 100
Query: 68 HD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSS 123
D LF+ T+ ++ + L D V + A + + L T +G+
Sbjct: 101 -DTILFNE--TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKW----DTIVGNKG 153
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGGER+R++ A LL DP +++ DE T+ LDS + + + +L R T+
Sbjct: 154 ----MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNR--TL 207
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
+ H+ S+ I + IILL + G+ L
Sbjct: 208 IIIAHRLST--ISSAESIILLNKGKIVEKGTHKDLLK 242
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 66.1 bits (162), Expect = 8e-13
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 23/157 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMY 66
G +V ++G SG+GKST L L+ L D +G+I ++G ++ K R G ++
Sbjct: 50 GEVVVVIGPSGSGKSTFLRCLN-LLED--FDEGEIIIDGINLKAKDTNLNKVREEVGMVF 106
Query: 67 QH-DLFSPSLTVYEHLYFMALLKLDRRVKAY-QRIALINSLLIELGLMNSQHTRIGSSSI 124
Q +LF P +TV ++ +A +K+ + + + A+ LL ++GL + H S
Sbjct: 107 QRFNLF-PHMTVLNNI-TLAPMKVRKWPREKAEAKAM--ELLDKVGLKDKAHAYPDS--- 159
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGG+ +R++ A L +P ++L DEPT+ LD
Sbjct: 160 -----LSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 64.0 bits (157), Expect = 3e-12
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 21/161 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
+++A G SG GKST+ +L +R G+I ++G+P++ +RS GF+ Q
Sbjct: 27 PNSIIAFAGPSGGGKSTI-FSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQ 83
Query: 68 HD-LFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSS 123
+ + T+ E+L Y + D + +A S + + L +T +G
Sbjct: 84 DSAIMAG--TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL----NTEVGERG 137
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
+ +SGG+R+RL+ A L +P +L+ DE T LDS S
Sbjct: 138 VK----ISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 65.1 bits (159), Expect = 6e-12
Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 28/214 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
SG VA++G SG GKST L QRL D +DG + ++G+ + R G + Q
Sbjct: 415 SGQTVALVGNSGCGKSTT-VQLMQRLYD--PLDGMVSIDGQDIRTINVRYLREIIGVVSQ 471
Query: 68 HDLFSPSL---TVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSS 122
P L T+ E++ + ++ + A +++L T +G
Sbjct: 472 E----PVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF----DTLVGER 523
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGG+++R++ A L+ +P +LL DE T+ LD+ S + + + + R T
Sbjct: 524 GAQ----LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGR--T 577
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
+ H+ S+ + D I G+ D
Sbjct: 578 TIVIAHRLST--VRNADVIAGFDGGVIVEQGNHD 609
Score = 58.1 bits (141), Expect = 1e-09
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 28/165 (16%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
G +A++G+SG GKST++ L +R D + G + ++GK ++ R+ G + Q
Sbjct: 1058 KGQTLALVGSSGCGKSTVVQ-LLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDRRV-----KAYQRIALINSLLIEL--GLMNSQHTRI 119
LF ++ E++ A R V + A I+ + L +TR+
Sbjct: 1115 EPILFD--CSIAENI---AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY----NTRV 1165
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
G TQ LSGG+++R++ A L+ P +LL DE T+ LD+ S
Sbjct: 1166 GDKG-TQ---LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 63.8 bits (156), Expect = 1e-11
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 31/180 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G VA++G SG+GKST+ A+L R D I +G I ++G + R+ + Q+
Sbjct: 369 GKTVALVGRSGSGKSTI-ASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 69 D-LFSPSLTVYEHLYFMALLKLDR-RVKAYQRIA----LINSLLIELGLMNSQHTRIGSS 122
LF+ TV ++ + + R +++ R+A IN + + GL T IG +
Sbjct: 426 VHLFND--TVANNIAYARTEEYSREQIEEAARMAYAMDFINKM--DNGL----DTIIGEN 477
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-----RMMRELTS 177
+ LSGG+R+R++ A LL D +L+ DE T+ LD+ S + I + + TS
Sbjct: 478 GVL----LSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTS 532
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 61.7 bits (151), Expect = 2e-11
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 27/157 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMY--- 66
G +V ++GA+GAGK+T L+A++ + G I NG+ + K + G
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHVINRMGIALVPE 88
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL---LIELGLMNSQHTRIGSSS 123
+F P LTVYE+L A + D+ + + I SL L E R+
Sbjct: 89 GRRIF-PELTVYENLMMGAYNRKDKEGIK-RDLEWIFSLFPRLKE---------RLKQLG 137
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160
T LSGGE++ L+ L++ P LL+ DEP+ GL
Sbjct: 138 GT----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGL 170
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 62.3 bits (152), Expect = 2e-11
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 31/172 (18%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGK--FRSACGFMY 66
G +V ++G SG+GK+T+L A L + P GD+ + GK V + G ++
Sbjct: 40 EGEMVGLLGPSGSGKTTILRLIAGLER--PTK----GDVWIGGKRVTDLPPQKRNVGLVF 93
Query: 67 QH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL-LIELGLMNSQHTRIGSSSI 124
Q+ LF +TVY+++ F L+ R K + L + L +
Sbjct: 94 QNYALF-QHMTVYDNVSFG--LREKRVPKDEMDARVRELLRFMRLESY-------ANRFP 143
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR-EL 175
+ LSGG+++R++ A L P +LL DEP +D +++ R +R +
Sbjct: 144 HE---LSGGQQQRVALARALAPRPQVLLFDEPFAAID----TQIRRELRTFV 188
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 62.6 bits (153), Expect = 3e-11
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 31/180 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G VA++G SG+GKST+ A L R D + G I ++G V R + Q+
Sbjct: 369 GKTVALVGRSGSGKSTI-ANLFTRFYD--VDSGSICLDGHDVRDYKLTNLRRHFALVSQN 425
Query: 69 D-LFSPSLTVYEHLYFMALLKLDR-RVKAYQRIA----LINSLLIELGLMNSQHTRIGSS 122
LF+ T+ ++ + A + R +++ R A I ++ GL T IG +
Sbjct: 426 VHLFND--TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM--PQGL----DTVIGEN 477
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-----RMMRELTS 177
+ LSGG+R+R++ A LL D +L+ DE T+ LD+ S + I + + T
Sbjct: 478 GTS----LSGGQRQRVAIARALLRDAPVLILDEATSALDTES-ERAIQAALDELQKNKTV 532
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 60.6 bits (148), Expect = 4e-11
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 37/213 (17%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGK--FRSACGFMYQ 67
++G +GAGKS L A + + PD G++R+NG + R GF+ Q
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVK--PDR----GEVRLNGADITPLPPERRGIGFVPQ 77
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
LF P L+VY ++ + L R V+ +R + + +LG+ + +
Sbjct: 78 DYALF-PHLSVYRNIAY-GL----RNVERVERDRRVREMAEKLGIAHLLDRKPAR----- 126
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMRELTSQRKKTVLC 185
LSGGER+R++ A L+ P LLL DEP + +D K +M EL +++ +
Sbjct: 127 ---LSGGERQRVALARALVIQPRLLLLDEPLSAVD----LKTKGVLMEELRFVQREFDVP 179
Query: 186 TIH----QPSSELIDMFDKIILLADSRTAFIGS 214
+H E + D++ ++ + R G
Sbjct: 180 ILHVTHDL--IEAAMLADEVAVMLNGRIVEKGK 210
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 60.3 bits (147), Expect = 6e-11
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 43/173 (24%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI-----ID-GDIRVNGKPVEG---------- 56
G +++I+G+SG+GKST L R CI G I VNG+ +
Sbjct: 32 GDVISIIGSSGSGKSTFL-----R----CINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82
Query: 57 -------KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE 108
R+ ++QH +L+ +TV E++ A +++ K L +
Sbjct: 83 ADKNQLRLLRTRLTMVFQHFNLW-SHMTVLENV-MEAPIQVLGLSKH-DARERALKYLAK 139
Query: 109 LGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
+G+ + LSGG+++R+S A L +P +LL DEPT+ LD
Sbjct: 140 VGIDERAQGKYPVH-------LSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 59.8 bits (146), Expect = 9e-11
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 30/219 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
G ++ I+G SG+GKSTL L QR +G + ++G + R G + Q
Sbjct: 34 QGEVIGIVGRSGSGKSTL-TKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQ 90
Query: 68 HD-LFSPSLTVYEHLYFMALLKLD---RRVKAYQRIALINSLLIEL--GLMNSQHTRIGS 121
+ L + ++ +++ +L +V ++A + + EL G +T +G
Sbjct: 91 DNVLLNR--SIIDNI---SLANPGMSVEKVIYAAKLAGAHDFISELREGY----NTIVGE 141
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ R
Sbjct: 142 ----QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR-- 195
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
TV+ H+ S+ + D+II++ + G L+
Sbjct: 196 TVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 232
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 59.4 bits (145), Expect = 1e-10
Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 39/193 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFM--YQ 67
G + I+G +G+GKSTL+ ++ L D +G + K + K G + +Q
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQ 89
Query: 68 H-DLFSPSLTVYE-----------HLYFMALLKLDRRV-KAYQRIALINSLLIELGLMNS 114
+TV E K + A +L L L +
Sbjct: 90 TPQPLK-EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF--KILEFLKLSHL 146
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL---DSFSASKLIRM 171
+ G LSGG+ K + L+T+P +++ DEP G+ + +
Sbjct: 147 YDRKAGE--------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 172 MRELTSQRKKTVL 184
++ + T L
Sbjct: 199 LKA----KGITFL 207
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 58.3 bits (142), Expect = 5e-10
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 33/174 (18%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSA------CG 63
G ++ I+GASG GK+TLL A Q PD G+I ++GK + K + G
Sbjct: 30 GEILFIIGASGCGKTTLLRCLAGFEQ--PDS----GEISLSGKTIFSKNTNLPVRERRLG 83
Query: 64 FMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
++ Q LF P LTVY ++ + L + A Q I ++L G+ + +
Sbjct: 84 YLVQEGVLF-PHLTVYRNIAYG--LGNGKGRTA-QERQRIEAMLELTGI-----SELAGR 134
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMREL 175
+ LSGG+++R + A L DP L+L DEP + LD +L ++ ++
Sbjct: 135 YPHE---LSGGQQQRAALARALAPDPELILLDEPFSALD----EQLRRQIREDM 181
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 58.7 bits (143), Expect = 5e-10
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 28/161 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G VA +G SG GKSTL+ + R D + G I ++G ++ G R+ G + Q
Sbjct: 367 GETVAFVGMSGGGKSTLINLIP-RFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQ- 422
Query: 69 D--LFSPSLTVYEHLYFMALLKLD---RRVKAYQRIALINSLLIEL--GLMNSQHTRIGS 121
D LFS TV E++ L + V ++A + ++ L G T +G
Sbjct: 423 DNILFSD--TVKENI---LLGRPTATDEEVVEAAKMANAHDFIMNLPQGY----DTEVGE 473
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162
+ LSGG+++RLS A L +P +L+ DE T+ LD
Sbjct: 474 RGVK----LSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 58.0 bits (141), Expect = 7e-10
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 45/182 (24%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL------PDDCIIDGDIRVNGKPVEGK--FRSACGF 64
G I+G +GAGK+ L L PD G I ++GK V + F
Sbjct: 26 GEYFVILGPTGAGKTLFL-----ELIAGFHVPDS----GRILLDGKDVTDLSPEKHDIAF 76
Query: 65 MYQH-DLFSPSLTVYEHLYF---MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
+YQ+ LF P + V ++L F M +K +RV R +++ +
Sbjct: 77 VYQNYSLF-PHMNVKKNLEFGMRMKKIKDPKRVLDTAR-------DLKIEHL-------L 121
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMRELTS-Q 178
+ LSGGE++R++ A L+T+P +LL DEP + LD + L+
Sbjct: 122 DRNPLT---LSGGEQQRVALARALVTNPKILLLDEPLSALD----PRTQENAREMLSVLH 174
Query: 179 RK 180
+K
Sbjct: 175 KK 176
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 57.0 bits (137), Expect = 1e-09
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 130 LSGGERKRLSFATEL------LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGER L A L + +LL+ DEPT LD KLI +M + + +
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 184 LCTIHQPSSELIDMFDKIILL 204
L + H EL D D +I +
Sbjct: 309 LVS-HDE--ELKDAADHVIRI 326
Score = 28.9 bits (64), Expect = 1.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 15 LVAIMGASGAGKSTLLAAL 33
+ I+G +G+GKS+LL A+
Sbjct: 25 INLIIGQNGSGKSSLLDAI 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 56.8 bits (138), Expect = 2e-09
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 42/221 (19%)
Query: 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFM 65
G+LVA++G +G+GKST L L RL D G + V+ V R +
Sbjct: 366 VKPGSLVAVLGETGSGKST-LMNLIPRLID--PERGRVEVDELDVRTVKLKDLRGHISAV 422
Query: 66 YQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIA----LINSLLIELGLMNSQHTRIG 120
Q LFS T+ E+L + D + +IA I SL G
Sbjct: 423 PQETVLFSG--TIKENLKWGREDATDDEIVEAAKIAQIHDFIISL--PEGY--------- 469
Query: 121 SSSITQKVV-LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA------SKLIRMMR 173
S + + SGG+++RLS A L+ P +L+ D D S+ +++ ++
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD------DCTSSVDPITEKRILDGLK 523
Query: 174 ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
T + T I Q + DKI++L + + A G+
Sbjct: 524 RYT--KGCTTF-IITQKIPTALLA-DKILVLHEGKVAGFGT 560
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 52.8 bits (127), Expect = 6e-09
Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 16/117 (13%)
Query: 92 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL------L 145
K + + + L + LSGGER L A L
Sbjct: 27 EGKYSEVVVRAEENKVRLFV---VWEGKERPLTF----LSGGERIALGLAFRLAMSLYLA 79
Query: 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 202
+ +LL+ DEPT LD KLI +M + V+ H EL D D +I
Sbjct: 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAADHVI 133
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 54.5 bits (132), Expect = 7e-09
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
G + A++G +G+GKST+ AAL Q L G + ++G+P+ + + Q
Sbjct: 44 PGKVTALVGPNGSGKSTV-AALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ 100
Query: 68 H-DLFSPSLTVYEH-LYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSS 123
LF + E+ Y + + A + + + G T +G +
Sbjct: 101 EPLLFG--RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY----DTEVGETG 154
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
LSGG+R+ ++ A L+ P LL+ D T+ LD+ +
Sbjct: 155 NQ----LSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 54.1 bits (131), Expect = 8e-09
Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 41/211 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G L+A+ G++GAGK++LL + L +G I+ +G+ F Q
Sbjct: 34 GQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR---------ISFCSQ----F 77
Query: 73 P---SLTVYEHLYFMALLKLDRRVKAYQRI----ALINSLLIELGLMNSQHTRIGSSSIT 125
T+ E++ F R Y+ + L + + +G IT
Sbjct: 78 SWIMPGTIKENIIFGVSYDEYR----YRSVIKACQLEEDISK---FAEKDNIVLGEGGIT 130
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRELTSQRKKTV 183
LSGG+R R+S A + D L L D P LD + ++ + + + KT
Sbjct: 131 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTR 183
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
+ + E + DKI++L + + F G+
Sbjct: 184 ILVTSK--MEHLKKADKILILHEGSSYFYGT 212
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 53.4 bits (129), Expect = 3e-08
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 23/163 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
SG++ A++G SG+GKST + +L RL D G I ++G + RS G + Q
Sbjct: 369 SGSVTALVGPSGSGKST-VLSLLLRLYD--PASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425
Query: 68 -HDLFSPSLTVYEHLYF---MALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGS 121
LF S ++ E++ + ++ +A + + G +T +G
Sbjct: 426 EPILF--SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGF----NTVVGE 479
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
+ LSGG+++R++ A LL +P +LL DE T+ LD+ +
Sbjct: 480 KGVL----LSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 518
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 52.3 bits (126), Expect = 4e-08
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 42/211 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G L+A+ G++GAGK++LL + L +G I+ +G+ F Q +
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR---------ISFCSQ----N 107
Query: 73 P---SLTVYEHLYFMALLKLDRRVKAYQRI----ALINSLLIELGLMNSQHTRIGSSSIT 125
T+ E++ + D Y+ + L + + +G IT
Sbjct: 108 SWIMPGTIKENIIG---VSYDE--YRYRSVIKACQLEEDISK---FAEKDNIVLGEGGIT 159
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRELTSQRKKTV 183
LSGG+R R+S A + D L L D P LD + ++ + + + KT
Sbjct: 160 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTR 212
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
+ + E + DKI++L + + F G+
Sbjct: 213 ILVTSK--MEHLKKADKILILHEGSSYFYGT 241
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 51.0 bits (123), Expect = 8e-08
Identities = 49/213 (23%), Positives = 93/213 (43%), Gaps = 43/213 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G LVA++G G GKS+LL+AL + ++G + + G ++ Q
Sbjct: 31 GALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKGS---------VAYVPQ----Q 74
Query: 73 P---SLTVYEHLYFMALLKLDRRVKAYQRI----ALINSLLIELGLMNSQHTRIGSSSIT 125
+ ++ E++ F L+ Y+ + AL+ L I L + T IG +
Sbjct: 75 AWIQNDSLRENILFGCQLEEPY----YRSVIQACALLPDLEI---LPSGDRTEIGEKGVN 127
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL----IRMMRELTSQRKK 181
LSGG+++R+S A + ++ + L D+P + +D+ + I L + K
Sbjct: 128 ----LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML---KNK 180
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
T + H + D II+++ + + +GS
Sbjct: 181 TRILVTHS--MSYLPQVDVIIVMSGGKISEMGS 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 2e-07
Identities = 58/353 (16%), Positives = 100/353 (28%), Gaps = 99/353 (28%)
Query: 4 LELTGAAL---SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI---RVNGKPVEGK 57
L+L A L V I G G+GK+ + + C +D I +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL------KN 191
Query: 58 FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI--------------N 103
S + + + + D RI I N
Sbjct: 192 CNSP------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 104 SLLIELGLMNSQH-------------TRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150
LL+ L + N++ TR +T LS +S L ++
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTR--FKQVTD--FLSAATTTHIS-----LDHHSM 296
Query: 151 LLCDEPTTGLDSFSASKLIRM-MRELTSQRKKT---VLCTIHQPSSELIDMFDKII---- 202
L + L K + ++L + T L I + + D
Sbjct: 297 TLTPDEVKSL--L--LKYLDCRPQDLPREVLTTNPRRLSII---AESIRDGLATWDNWKH 349
Query: 203 LLADSRTAFIGSKDAALAFLESQGYPCPYGYN-----PADFLI--KSLAV-----TTND- 249
+ D T I S L E + ++ P I L++ +D
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKM-----FDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 250 -----ELSSRRRLKRICDEFSV----CDFAKEVDLEINYQTH---VGTYDVHK 290
+L +++ E ++ +V LE Y H V Y++ K
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 44.6 bits (105), Expect = 7e-06
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
++ I G G GK+ L +RLP + + +
Sbjct: 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE 39
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 44.6 bits (106), Expect = 2e-05
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 49/180 (27%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC------- 62
G I+G SGAGK+T + A L G++ + + V +
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDV------PSTGELYFDDRLVASNGKLIVPPEDRKI 84
Query: 63 GFMYQ-HDLFSPSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLIELGLMN 113
G ++Q L+ P+LT +E++ F L +RV+ +I I+ +L
Sbjct: 85 GMVFQTWALY-PNLTAFENIAFP--LTNMKMSKEEIRKRVEEVAKILDIHHVL------- 134
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
LSG +++R++ A L+ DP+LLL DEP + LD +++ R
Sbjct: 135 ---NHFPRE-------LSGAQQQRVALARALVKDPSLLLLDEPFSNLD----ARMRDSAR 180
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 43.4 bits (102), Expect = 2e-05
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
L I G +G GKST L+ +L + I+GDI
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI 36
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 42.9 bits (102), Expect = 7e-05
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 22/157 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G VA++G +G+GK+T++ L R D + G I V+G + RS+ G + Q
Sbjct: 381 GQKVALVGPTGSGKTTIVNLLM-RFYD--VDRGQILVDGIDIRKIKRSSLRSSIGIVLQ- 436
Query: 69 D--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSI 124
D LFS TV E+L + D +K ++ + + L G T + +
Sbjct: 437 DTILFST--TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGY----ETVLTDNGE 490
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LS G+R+ L+ L +P +L+ DE T+ +D
Sbjct: 491 D----LSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 42.8 bits (101), Expect = 8e-05
Identities = 42/202 (20%), Positives = 88/202 (43%), Gaps = 38/202 (18%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH-DL 70
V ++G +G+GKSTLL+A RL + +G+I+++G + ++R A G + Q +
Sbjct: 50 VGLLGRTGSGKSTLLSAFL-RLLN---TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFI 105
Query: 71 FSPSL-------TVYEHLYFMALLKLDRRV-KAYQRIALINSLLIELGLMNSQHTRIGSS 122
FS + + D+ + K + L + + G ++ G
Sbjct: 106 FSGTFRKNLDPNAAHS----------DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCV 155
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LS G ++ + A +L+ +LL DEP+ LD + + R +++ + T
Sbjct: 156 -------LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC--T 206
Query: 183 VLCTIHQPSSELIDMFDKIILL 204
V+ + + + D+ +++
Sbjct: 207 VILCEARIEA--MLECDQFLVI 226
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 41.2 bits (97), Expect = 1e-04
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDC-IIDGD 46
TL+ + G KST+ A LS+ L II G
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKEL--KYPIIKGS 33
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 41.7 bits (99), Expect = 1e-04
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK------PVEGKFRSACG-F 64
G + A+MG +GAGKSTL L+ P+ + G+I ++G+ P E R+ G F
Sbjct: 28 KGEVHALMGPNGAGKSTLGKILAGD-PEYTVERGEILLDGENILELSPDE---RARKGLF 83
Query: 65 M-YQHDLFSPSLTVYEHLYFMALLKLDRR---VKAYQRIALINSLLIELGLMNSQHTRIG 120
+ +Q+ + P +T+ F+ L + V + + L L
Sbjct: 84 LAFQYPVEVPGVTI---ANFLRLALQAKLGREVGVAEFWTKVKKALELLDW--------- 131
Query: 121 SSSITQKVV---LSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
S + + SGGE+KR L+ +P + DE +GLD
Sbjct: 132 DESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 41.1 bits (96), Expect = 1e-04
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSP 73
L+ + G GK+TL AL+ L ++ D + G+ +S
Sbjct: 6 ALIIVTGHPATGKTTLSQALATGLR-LPLLSKDA------FKEVMFDGLGW--SDREWSR 56
Query: 74 SLT--VYEHLYFMALLKLDR 91
+ LY A L
Sbjct: 57 RVGATAIMMLYHTAATILQS 76
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 40.6 bits (95), Expect = 3e-04
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 130 LSGGERKRLSFATEL-------LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGGE+ ++ + L ++ DEPT LD +KL + R++ S +
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 183 VLCTI-HQPSSELIDMFDKII 202
+ I H EL D+ D II
Sbjct: 341 I---ITHHR--ELEDVADVII 356
Score = 29.4 bits (66), Expect = 1.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALS 34
+VAI+G +G+GKS++ A+
Sbjct: 23 FEKGIVAIIGENGSGKSSIFEAVF 46
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 39.3 bits (91), Expect = 5e-04
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGD 46
L G ++ + G G+GKST+ AL+ + D
Sbjct: 4 TDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 39.5 bits (93), Expect = 6e-04
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 34/168 (20%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK------PVEGKFRSACG-F 64
G + AIMG +G+GKSTL A L+ R D + G + GK P + R+ G F
Sbjct: 45 PGEVHAIMGPNGSGKSTLSATLAGR-EDYEVTGGTVEFKGKDLLALSPED---RAGEGIF 100
Query: 65 M-YQHDLFSPSLTVYEHLYFM-----ALLKL--DRRVKAYQRIALINSLLIELGLMNSQH 116
M +Q+ + P ++ +F+ A+ + + L+ + L +
Sbjct: 101 MAFQYPVEIPGVSN---QFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM----- 152
Query: 117 TRIGSSSITQKVV---LSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
+ + V SGGE+KR + +P L + DE +GLD
Sbjct: 153 ----PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 196
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 39.5 bits (93), Expect = 8e-04
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 54/177 (30%)
Query: 16 VAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPV---EGKFRS-ACGF---- 64
+A++G SG+GKSTLL A + + G I + K V K R+ F
Sbjct: 32 MALLGPSGSGKSTLLYTIAGIYK------PTSGKIYFDEKDVTELPPKDRNVGLVFQNWA 85
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLIELGLMNSQH 116
+Y H +TVY+++ F L+L D++V+ ++ I+ LL
Sbjct: 86 LYPH------MTVYKNIAFP--LELRKAPREEIDKKVREVAKMLHIDKLL---------- 127
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
R LSGG+++R++ A L+ +P +LL DEP + LD + L +R
Sbjct: 128 NRYPWQ-------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLD----ALLRLEVR 173
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 38.5 bits (89), Expect = 0.001
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
++ + +MG SG+GKS + + ++ +L +DGD
Sbjct: 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQL-HAAFLDGD 40
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 39.4 bits (93), Expect = 0.001
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 118 RIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
++G + T LSGGE +R+ A+EL T L + DEPT GL KL+ ++
Sbjct: 798 KLGQPATT----LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 175 LTSQ 178
L +
Sbjct: 854 LVDR 857
Score = 33.2 bits (77), Expect = 0.11
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRL 37
G V + G SG+GKS+L+ AL L
Sbjct: 610 GVFVCVTGVSGSGKSSLVMETLYPALMNLL 639
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 38.3 bits (89), Expect = 0.001
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCII 43
++ I G + +GK+TL L + LP+ +I
Sbjct: 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVI 51
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 39.0 bits (92), Expect = 0.001
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 118 RIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
R+G + LSGGE +R+ ATEL + + DEPTTGL +L R + +
Sbjct: 723 RLGQPATE----LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVK 778
Query: 175 L 175
L
Sbjct: 779 L 779
Score = 34.8 bits (81), Expect = 0.029
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRLPDDCIIDGDIRVNG-KPVEGKFRSACGF 64
G + ++ G SG+GKSTL+ AL+ D + + G R
Sbjct: 523 GVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDL 580
Score = 27.1 bits (61), Expect = 9.5
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 15 LVAIMGASGAGKSTL----LAALSQR 36
LV G SG+GKS+L L A +QR
Sbjct: 38 LVVFTGVSGSGKSSLAFGTLYAEAQR 63
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 38.2 bits (90), Expect = 0.001
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPD 39
V + G SGAGKSTLL L Q
Sbjct: 4 PRPVVLSGPSGAGKSTLLKKLFQEHSS 30
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 38.7 bits (91), Expect = 0.001
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 54/180 (30%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPV---EGKFRS-ACGF- 64
G VA++G SG GK+T L A + + G+I + V K+R F
Sbjct: 29 GEFVALLGPSGCGKTTTLLMLAGIYK------PTSGEIYFDDVLVNDIPPKYREVGMVFQ 82
Query: 65 ---MYQHDLFSPSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLIELGLMN 113
+Y H +TV+E++ F L+ ++RV R LI++LL
Sbjct: 83 NYALYPH------MTVFENIAFP--LRARRISKDEVEKRVVEIARKLLIDNLL------- 127
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
R + LSGG+++R++ A L+ P +LL DEP + LD + L +MR
Sbjct: 128 ---DRKPTQ-------LSGGQQQRVALARALVKQPKVLLFDEPLSNLD----ANLRMIMR 173
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 37.7 bits (87), Expect = 0.002
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRL 37
+ +MG SG+GKS++ A+++
Sbjct: 19 GSIVVMGVSGSGKSSVGEAIAEAC 42
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 38.7 bits (91), Expect = 0.002
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 118 RIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
++G + T LSGGE +R+ A EL L + DEPTTGL ++L+ ++
Sbjct: 536 KLGQPATT----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 591
Query: 175 LTSQ 178
L
Sbjct: 592 LVDN 595
Score = 33.7 bits (78), Expect = 0.073
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRL 37
GT VA+ G SG+GKSTL+ AL+Q+L
Sbjct: 348 GTFVAVTGVSGSGKSTLVNEVLYKALAQKL 377
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 37.5 bits (88), Expect = 0.002
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD 40
G L+ + G SG GK T+ + +
Sbjct: 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTS 33
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 38.0 bits (89), Expect = 0.002
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 54/177 (30%)
Query: 16 VAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPV---EGKFRS-ACGF---- 64
+ ++G SG GK+T L A L + +G I + V K R+ + F
Sbjct: 40 LVLLGPSGCGKTTTLRMIAGLEE------PTEGRIYFGDRDVTYLPPKDRNISMVFQSYA 93
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLIELGLMNSQH 116
++ H +TVYE++ F LK+ D+RV+ + I LL
Sbjct: 94 VWPH------MTVYENIAFP--LKIKKFPKDEIDKRVRWAAELLQIEELL---------- 135
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
R + LSGG+R+R++ A ++ +P +LL DEP + LD +KL MR
Sbjct: 136 NRYPAQ-------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD----AKLRVAMR 181
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 38.3 bits (90), Expect = 0.002
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 118 RIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
++G + T LSGGE +R+ A EL L + DEPTTGL ++L+ ++
Sbjct: 838 KLGQPATT----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 175 LTSQ 178
L
Sbjct: 894 LVDN 897
Score = 33.6 bits (78), Expect = 0.083
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRL 37
GT VA+ G SG+GKSTL+ AL+Q+L
Sbjct: 650 GTFVAVTGVSGSGKSTLVNEVLYKALAQKL 679
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 37.2 bits (87), Expect = 0.003
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPD 39
G +V + G S GKST++ L +R+P+
Sbjct: 20 GRVVVLSGPSAVGKSTVVRCLRERIPN 46
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 38.3 bits (90), Expect = 0.003
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 118 RIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
R+G + T LSGGE +R+ A+EL T + + DEPTTGL KL+ ++
Sbjct: 856 RLGQPAPT----LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVING 911
Query: 175 LTSQ 178
L +
Sbjct: 912 LVDK 915
Score = 33.7 bits (78), Expect = 0.068
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRL 37
G L ++ G SG+GKSTL+ A L+ RL
Sbjct: 668 GVLTSVTGVSGSGKSTLVNDILAAVLANRL 697
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 37.1 bits (87), Expect = 0.003
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD 40
+ + G SG GK TL+ + P
Sbjct: 12 IPPLVVCGPSGVGKGTLIKKVLSEFPSR 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.003
Identities = 47/248 (18%), Positives = 82/248 (33%), Gaps = 93/248 (37%)
Query: 6 LTGAALSGTLVA-IMGASGAGKS---------TLL-------------AALSQRLPDDCI 42
TG + G + A + + + +S T+L +L + +D +
Sbjct: 270 ATGHS-QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 43 IDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTV----YEHLYFMALLKLDRRVKAYQR 98
+ G P SP L++ E + + K + + A ++
Sbjct: 329 ENN----EGVP------------------SPMLSISNLTQEQV-QDYVNKTNSHLPAGKQ 365
Query: 99 --IALIN------------SLLIELGLMNSQHTRIGSSSITQ-KVVLSGGERK-RLS--- 139
I+L+N SL GL + S + Q ++ S ERK + S
Sbjct: 366 VEISLVNGAKNLVVSGPPQSL---YGLNLTLRKAKAPSGLDQSRIPFS--ERKLKFSNRF 420
Query: 140 ------FATELLTD-PALLLCDEPTTGLDSFSASKL-I--------RMMREL-TSQRKKT 182
F + LL L+ D + SF+A + I +R L S ++
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNV-SFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 183 VLCTIHQP 190
V C I P
Sbjct: 480 VDCIIRLP 487
Score = 36.2 bits (83), Expect = 0.012
Identities = 54/292 (18%), Positives = 87/292 (29%), Gaps = 93/292 (31%)
Query: 28 TLLAALSQRLPDDCIIDGD-IR-------VNGKPVEGKFRSACGFMYQHDLF----SPSL 75
L A L Q + + I+ + +P + K SA LF +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA--------LFRAVGEGNA 154
Query: 76 TVY---------EHLYFMALLKLDRRVKAYQRI--ALINS---LLIELGLMNSQHTRIGS 121
+ + YF L L + Y + LI L EL
Sbjct: 155 QLVAIFGGQGNTDD-YFEELRDL---YQTYHVLVGDLIKFSAETLSELI----------R 200
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG-LDSFSAS-KLIRMMRELTSQR 179
+++ + V + G L+ E L +P+ + P L S S LI +
Sbjct: 201 TTLDAEKVFTQG----LNIL-EWLENPS----NTPDKDYLLSIPISCPLI----GVIQLA 247
Query: 180 KKTVLCTIHQPS-SELIDMFD------------KIILLADSRTAFIGSKDAALAFLESQG 226
V + + EL I DS +F S A+ L G
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 227 YPC----PYGYNPADFLIKSLAVTTNDE------LS----SRRRLKRICDEF 264
C P P L SL N+E LS ++ +++ ++
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLE---NNEGVPSPMLSISNLTQEQVQDYVNKT 356
Score = 29.6 bits (66), Expect = 1.3
Identities = 34/212 (16%), Positives = 65/212 (30%), Gaps = 71/212 (33%)
Query: 3 ELELTG------AALSGTLVAIMGASG--------AGKSTL-----LAALSQRLPDDCII 43
L T + + + G AG S L LA+L+ + I
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS-LGEYAALASLADVMS---IE 1780
Query: 44 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL-- 101
+ V V +R G Q + P + Y M + R ++ + AL
Sbjct: 1781 SL-VEV----V--FYR---GMTMQVAV--PRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 102 -INSLLIELGLM------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154
+ + G + N ++ Q+ V +G + + L T +
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVEN---------QQYVAAG-DLRALDTVTNV---------- 1868
Query: 155 EPTTGLDSFSASK--LIRMMRELTSQRKKTVL 184
L+ K +I + + L+ + + L
Sbjct: 1869 -----LNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 36.8 bits (86), Expect = 0.004
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDD---CIIDGDI 47
V IMGA G+GK+ L+ +R+ ++ + GD+
Sbjct: 31 VAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV 67
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 36.5 bits (85), Expect = 0.005
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDD---CIIDGDI 47
MGA G+GK+ L+ L L D I GD+
Sbjct: 39 VAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDV 75
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 36.4 bits (85), Expect = 0.005
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDD 40
+ + I G SG GK TL+ L P+
Sbjct: 22 NIYPLVICGPSGVGKGTLIKKLLNEFPNY 50
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 36.3 bits (85), Expect = 0.006
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPD 39
L I SGAGK++L+ AL + L +
Sbjct: 7 ANLFIISAPSGAGKTSLVRALVKALAE 33
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 35.9 bits (84), Expect = 0.006
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD 40
G L+ + G SG GK T+ A+ +
Sbjct: 8 GLLIVLSGPSGVGKGTVREAVFKDPETS 35
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 36.6 bits (84), Expect = 0.007
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
++ +G G+GKST + P I+ D
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 36.1 bits (84), Expect = 0.009
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIID-GDIR 48
AL+G + G SG GKS+LL AL L I D+
Sbjct: 211 EALTGRISIFAGQSGVGKSSLLNAL---LGLQNEILTNDVS 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 35.5 bits (81), Expect = 0.009
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD 39
++ ++ + G S AGKS ++ L LP+
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPE 29
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 35.4 bits (82), Expect = 0.011
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI 42
++ I G S +GK+TL LSQ L + I
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGI 51
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 35.6 bits (83), Expect = 0.011
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD 40
G ++ + SG GK+T+ L ++ ++
Sbjct: 27 GVILVLSSPSGCGKTTVANKLLEKQKNN 54
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 35.2 bits (82), Expect = 0.011
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD 40
+ ++GASG G+S + AL + P+
Sbjct: 19 RKTLVLIGASGVGRSHIKNALLSQNPEK 46
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 34.8 bits (80), Expect = 0.013
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
++ +G G+GKST + P I+ D
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 35.6 bits (83), Expect = 0.014
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDD 40
L G + + G SG GKS++L+ L ++
Sbjct: 161 DYLEGFICILAGPSGVGKSSILSRL---TGEE 189
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 35.2 bits (82), Expect = 0.014
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD 40
GTL + SGAGKS+L+ AL + P
Sbjct: 16 GTLYIVSAPSGAGKSSLIQALLKTQPLY 43
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 34.8 bits (81), Expect = 0.016
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDD 40
+ + ++GA G G+ + L + PD
Sbjct: 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKHPDR 32
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 35.3 bits (80), Expect = 0.017
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGD 46
+ + G SGAGK+T+ + + + IDGD
Sbjct: 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGD 66
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 34.8 bits (80), Expect = 0.019
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV 49
L+ + G + +GKST+ + + L + + +V
Sbjct: 27 LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKV 61
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 34.9 bits (81), Expect = 0.021
Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 60/186 (32%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACG------ 63
G + ++G SG GK+T L A L + G I + K V +
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEE------PSRGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 64 ----F----MYQHDLFSPSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLI 107
F +Y H +TVY+++ F LKL D+RV+ + + LL
Sbjct: 83 IAMVFQSYALYPH------MTVYDNIAFP--LKLRKVPRQEIDQRVREVAELLGLTELL- 133
Query: 108 ELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 167
R LSGG+R+R++ ++ P + L DEP + LD +K
Sbjct: 134 ---------NRKPRE-------LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD----AK 173
Query: 168 LIRMMR 173
L MR
Sbjct: 174 LRVRMR 179
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 34.7 bits (79), Expect = 0.021
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCI----IDGDIRVNGKPVEGKF 58
V I G G+GK+T L + D C+ ++ VNG +
Sbjct: 23 VLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELM 69
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 34.4 bits (80), Expect = 0.021
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD 40
+ I G SG GKSTLL L PD
Sbjct: 3 PIVISGPSGTGKSTLLKKLFAEYPDS 28
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 35.0 bits (80), Expect = 0.022
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD----CIIDGD 46
++++ G+SGAG ST+ Q + I+GD
Sbjct: 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 34.3 bits (78), Expect = 0.025
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLP 38
V +MG SG+GK+T+ ++
Sbjct: 30 RHVVVMGVSGSGKTTIAHGVADETG 54
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 34.4 bits (80), Expect = 0.027
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
L G + + G SG GKS+LL A+ P + ++
Sbjct: 165 EYLKGKISTMAGLSGVGKSSLLNAI---NPGLKLRVSEV 200
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 34.5 bits (79), Expect = 0.030
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDC----IIDGD 46
L+ + G G GKST L++ L + ++ D
Sbjct: 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 34.5 bits (80), Expect = 0.030
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
G SG GKS+LL A+ P+ + +I
Sbjct: 169 PHFQDKTTVFAGQSGVGKSSLLNAI---SPELGLRTNEI 204
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 34.7 bits (79), Expect = 0.031
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG 51
A++ G + +AA+ + + + I +
Sbjct: 121 CTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQ 157
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 34.1 bits (78), Expect = 0.037
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
L+ +MGA+G GKS L L+ P + +I+ D
Sbjct: 42 LLVLMGATGTGKSRLSIDLAAHFPLE-VINSD 72
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in
complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo
sapiens} PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 33.7 bits (78), Expect = 0.039
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 20 GASGAGKSTLLAALSQRLPDD----CIIDGD-IR 48
G SGAGK+T+ AL + L +DGD IR
Sbjct: 12 GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 34.0 bits (78), Expect = 0.039
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV 49
L+ + G + +GKS++ A + Q L + + +V
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQV 58
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 33.8 bits (78), Expect = 0.039
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCII 43
++ I G + +GK+TL AL++ L + +
Sbjct: 8 VIGIAGGTASGKTTLAQALARTLGERVAL 36
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 33.4 bits (77), Expect = 0.047
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 20 GASGAGKSTLLAALSQRLPDD-----CIIDGD-IR 48
G S +GKSTL L +L D +DGD IR
Sbjct: 32 GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 33.1 bits (75), Expect = 0.047
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 7 TGAALSGTLVAIMGASGAGKSTLLAALSQR 36
+ V I G + GKS L AL R
Sbjct: 10 NFLVIDKMGVLITGEANIGKSELSLALIDR 39
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 33.4 bits (77), Expect = 0.061
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD 40
L A ++ + G +G+GK+TL+ AL Q +P D
Sbjct: 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 33.0 bits (76), Expect = 0.064
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 20 GASGAGKSTLLAALSQRLPDD----CIIDGD-IR 48
G SG+GKSTL AL+Q L I+DGD +R
Sbjct: 32 GLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural
genomics, NPPSFA, national P protein structural and
functional analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 32.9 bits (76), Expect = 0.073
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 20 GASGAGKSTLLAALSQRLPDD----CIIDGD-IR 48
G G+GK+T+ L+ L + ++DGD R
Sbjct: 20 GLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 33.5 bits (76), Expect = 0.077
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 16 VAIMGASGAGKSTLLAAL 33
VA+ G +G+GKS+ + L
Sbjct: 72 VAVTGETGSGKSSFINTL 89
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 32.4 bits (73), Expect = 0.085
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIID 44
+ I G G GK+++ ++ L ++
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELDGFQHLE 41
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 32.8 bits (74), Expect = 0.087
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
++I G GKST + L++ P+ + +
Sbjct: 5 LSIEGNIAVGKSTFVKLLTKTYPEWHVATEPV 36
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 33.2 bits (76), Expect = 0.089
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
L LT V + G G GKST + AL+ LP+ ++G
Sbjct: 36 LLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGC 78
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 33.1 bits (74), Expect = 0.099
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGD 46
T + G G+GK++L +A+ + + I ID D
Sbjct: 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND 67
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 32.7 bits (75), Expect = 0.10
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD 40
+ G V + G +G+GK+T + ++ + +P +
Sbjct: 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 198
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 31.9 bits (72), Expect = 0.13
Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 39/179 (21%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
+ I G G GK+TL+ + +RL A GF + ++ P
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGK--------------------RAIGF-WTEEVRDPE- 40
Query: 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 135
++ ++ I I + +GS + +
Sbjct: 41 --------------TKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIP 86
Query: 136 K-RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 193
++ +++ DE G + K ++R++ V+ TI
Sbjct: 87 ILERAYREAKKDRRKVIIIDE--IGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH 143
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 32.3 bits (73), Expect = 0.13
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR----LPDDCII 43
G V I G SG GKS L QR + DD +
Sbjct: 34 GLGVLITGDSGVGKSETALELVQRGHRLIADDRVD 68
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 32.0 bits (73), Expect = 0.14
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD 40
LVA+ GA G+GKSTL L+ L
Sbjct: 24 LVALSGAPGSGKSTLSNPLAAALSAQ 49
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 32.4 bits (73), Expect = 0.15
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 11 LSGTLVAIMGASGAGKSTLLAAL 33
++GT+ A++ GAGKS L L
Sbjct: 28 VAGTVGALVSPGGAGKSMLALQL 50
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 31.0 bits (71), Expect = 0.23
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR 36
G V I G AGKS+LL AL+ R
Sbjct: 4 GMKVVIAGRPNAGKSSLLNALAGR 27
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein
phosphatase, dual activity, product, substrate,
transferase, hydrolase; 1.95A {Staphylococcus xylosus}
SCOP: c.98.2.1 c.91.1.2
Length = 314
Score = 31.5 bits (71), Expect = 0.24
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 1 MTELELTGAALSGTLVAIMGASGAGKSTLLAALSQR----LPDDCI----IDGDIRVNGK 52
T L + G V I G SG GKS L +R + DD + I D +
Sbjct: 132 TTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRA 191
Query: 53 P 53
P
Sbjct: 192 P 192
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 31.1 bits (70), Expect = 0.24
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
+ + G G GK+TL L+ + I GD+
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVGDL 45
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 30.9 bits (71), Expect = 0.35
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
V I G S +GKS++ ++ L
Sbjct: 5 VTIDGPSASGKSSVARRVAAAL 26
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 30.9 bits (71), Expect = 0.35
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+A+ G + AGKST+ ++ L
Sbjct: 6 IALDGPAAAGKSTIAKRVASEL 27
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 31.0 bits (69), Expect = 0.35
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
++I G AGKST + L Q D ++ +
Sbjct: 27 ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPV 58
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 31.3 bits (71), Expect = 0.37
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD 40
++G + +GK+T L A+ +P D
Sbjct: 263 AIVVGETASGKTTTLNAIMMFIPPD 287
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 30.5 bits (70), Expect = 0.44
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+AI G + +GKST+ +++
Sbjct: 19 IAIDGPASSGKSTVAKIIAKDF 40
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 30.7 bits (70), Expect = 0.44
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 13 GTLVAIMGASGAGKSTLL 30
G +A+ G G GK+
Sbjct: 23 GFFIALTGEPGTGKTIFS 40
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 30.9 bits (70), Expect = 0.47
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
V I G G GKST + AL L
Sbjct: 58 VGITGVPGVGKSTTIDALGSLL 79
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 30.9 bits (70), Expect = 0.47
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+ + G GAGKST L A L
Sbjct: 59 LGVTGTPGAGKSTFLEAFGMLL 80
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 30.5 bits (70), Expect = 0.48
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
VA+ G +G GKS++ L++ L
Sbjct: 12 VAVDGPAGTGKSSVSRGLARAL 33
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 30.5 bits (70), Expect = 0.49
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+ I G SGAGK TL A+++ L
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEAL 29
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.0 bits (70), Expect = 0.49
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLA 31
G +++ GA+G GK+ L++
Sbjct: 274 CGGGFFKDSIILATGATGTGKTLLVS 299
Score = 29.1 bits (65), Expect = 2.0
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 13 GTLVAIMGASGAGKSTLL 30
G + G SG GK+
Sbjct: 39 GRSTLVSGTSGTGKTLFS 56
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 30.6 bits (69), Expect = 0.51
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
V I G G GKST + AL L
Sbjct: 82 VGITGVPGVGKSTAIEALGMHL 103
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 30.3 bits (68), Expect = 0.52
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+AI G GAGKST+ A +S++L
Sbjct: 3 IAIFGTVGAGKSTISAEISKKL 24
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.0 bits (70), Expect = 0.54
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 15 LVAIMGASGAGKSTLLAALSQ 35
V I G +G GKS L A +
Sbjct: 149 WVTIYGMAGCGKSVLAAEAVR 169
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 30.4 bits (68), Expect = 0.54
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD---CIIDGDIRVN 50
V +G +G+GK+TL + L D+ ++ D V
Sbjct: 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVK 54
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 30.2 bits (69), Expect = 0.58
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 10/49 (20%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGDIRVNGKPVEGKFR 59
G L + G +GK+TL +D EG F
Sbjct: 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT---------EGGFS 58
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 30.6 bits (69), Expect = 0.58
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
V + G GAGKST + + L
Sbjct: 77 VGLSGPPGAGKSTFIEYFGKML 98
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 30.3 bits (69), Expect = 0.59
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 1 MTELELTGAALSGTLVAIMGASGAGKSTLLAALSQRL 37
M LE + G G+GK+T L++ L
Sbjct: 9 MGTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYL 45
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 30.1 bits (67), Expect = 0.62
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI 42
+ + G G GKST+LA + + L + I
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGI 30
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 30.6 bits (69), Expect = 0.63
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALS 34
+ + G +GAGKS+L A+S
Sbjct: 21 FQSGITVVEGPNGAGKSSLFEAIS 44
Score = 30.2 bits (68), Expect = 0.71
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 130 LSGGERKRLSFATEL-LTDPA-----LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGER +S + + L + A DE + LD+ + K+ +++EL K V
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 184 LCTIHQPSSELIDMFDKII 202
T H E + FD+ +
Sbjct: 340 FIT-HDR--EFSEAFDRKL 355
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 30.0 bits (68), Expect = 0.72
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 13 GTLVAIMGASGAGKSTLL 30
+V + G G GK+
Sbjct: 23 RNVVLLSGGPGTGKTIFS 40
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 30.2 bits (69), Expect = 0.73
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 7 TGAAL-SGTLVAIMGASGAGKSTLLAALSQR 36
G + G I G AGKSTLL L +
Sbjct: 226 HGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQ 256
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.6 bits (66), Expect = 0.74
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG 51
+++I+G S +GK+TL+ + L + + ++ +
Sbjct: 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 29.6 bits (66), Expect = 0.82
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
+ ++G +GK+TL+
Sbjct: 6 VWQVVGYKHSGKTTLMEKWVAAA 28
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 30.2 bits (69), Expect = 0.88
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 7 TGAAL-SGTLVAIMGASGAGKSTLLAALSQR 36
G L +G VAI+G GKS+LL A SQ
Sbjct: 217 KGELLRTGLKVAIVGRPNVGKSSLLNAWSQS 247
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug
gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 29.7 bits (66), Expect = 0.92
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCII 43
V I G G GK+T L D I+
Sbjct: 7 VYIDGPHGMGKTTTTQLLVALGSRDDIV 34
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 30.0 bits (67), Expect = 0.93
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 16 VAIMGASGAGKSTLLAALSQRL----PDDCIID 44
I+ GAGKS L R IID
Sbjct: 38 WTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 29.6 bits (67), Expect = 0.94
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 15 LVAIMGASGAGKSTLLAALS 34
+ I+G +G+GKS+LL A+
Sbjct: 25 INLIIGQNGSGKSSLLDAIL 44
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 29.8 bits (68), Expect = 0.96
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
+ +MG + +GK+ L L + LP + +I D
Sbjct: 12 AIFLMGPTASGKTALAIELRKILPVE-LISVD 42
>2zyz_B TRNA-splicing endonuclease; crenarchaea, heterotetramer, RNA PROC
endonuclease, hydrolase, tRNA processing; 1.70A
{Pyrobaculum aerophilum}
Length = 183
Score = 29.3 bits (65), Expect = 0.98
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 193
SA+ + R R S RK L T+ + + E
Sbjct: 140 KGISATDITRGGRLSHSVRKTWTLATVLRQTGE 172
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 28.9 bits (65), Expect = 1.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 15 LVAIMGASGAGKSTLLAALS 34
+ I+G +G+GKS+LL A+
Sbjct: 25 INLIIGQNGSGKSSLLDAIL 44
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 29.8 bits (68), Expect = 1.1
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 7 TGAAL-SGTLVAIMGASGAGKSTLLAALSQR 36
G L G + I+G GKSTLL L
Sbjct: 236 AGILLNRGLRMVIVGKPNVGKSTLLNRLLNE 266
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 29.5 bits (67), Expect = 1.1
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 15 LVAIMGASGAGKSTLLAAL 33
L+ + G +G+GKST +A++
Sbjct: 27 LILVTGPTGSGKSTTIASM 45
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 29.9 bits (66), Expect = 1.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 11 LSGTLVAIMGASGAGKSTLLAAL 33
+ + G +GAGKST +A
Sbjct: 27 FDELVTTLSGGNGAGKSTTMAGF 49
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 30.0 bits (66), Expect = 1.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+ ++G GKST L AL
Sbjct: 72 LLVLGDMKRGKSTFLNAL 89
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 29.4 bits (67), Expect = 1.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
+ +MG + AGK+ L AL+ LP + +I D
Sbjct: 7 AIFLMGPTAAGKTDLAMALADALPCE-LISVD 37
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.4 bits (65), Expect = 1.3
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 23/105 (21%)
Query: 18 IMGASGAGKSTLLAAL--------------SQRLPDDCIIDG---DIRVNGKPVEGKFRS 60
++G SG GKSTL+ +L ++++ I+ +I G +
Sbjct: 23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVD 82
Query: 61 ACGFMYQHDLFSPSLTVYEHL------YFMALLKLDRRVKAYQRI 99
G+ + T+ ++ Y L+RR R+
Sbjct: 83 TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRV 127
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 29.1 bits (65), Expect = 1.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 13 GTLVAIMGASGAGKSTLL 30
GT V + G +G GK+T
Sbjct: 30 GTTVLLTGGTGTGKTTFA 47
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 29.6 bits (67), Expect = 1.4
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
++ I G +G GKS L L+Q+ + +I+ D
Sbjct: 4 VIVIAGTTGVGKSQLSIQLAQKFNGE-VINSD 34
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome
partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 29.0 bits (64), Expect = 1.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 11 LSGTLVAIMGASGAGKSTLLAAL 33
L + + G +GAGKST +AA
Sbjct: 25 LDELVTTLSGGNGAGKSTTMAAF 47
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 29.4 bits (67), Expect = 1.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
LVAI+G + GK+ L++RL + +I GD
Sbjct: 5 LVAIVGPTAVGKTKTSVMLAKRLNGE-VISGD 35
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 29.4 bits (67), Expect = 1.4
Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 60/173 (34%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGK----------FR 59
G V +G SG GKSTLL A L + I GD+ + K + F+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL------ETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82
Query: 60 S-ACGFMYQHDLFSPSLTVYEHLYFMAL-LKL--------DRRVKAYQRIALINSLLIEL 109
S A +Y H L+V E+ M+ LKL ++RV + + LL
Sbjct: 83 SYA---LYPH------LSVAEN---MSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL--- 127
Query: 110 GLMNSQHTRIGSSSITQK-VVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
+K LSGG+R+R++ L+ +P++ L DEP + LD
Sbjct: 128 ---------------DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 29.3 bits (65), Expect = 1.5
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDD 40
+ + G G GKST ++
Sbjct: 8 VRIYLDGVYGIGKSTTGRVMASAASGG 34
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 29.1 bits (66), Expect = 1.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 15 LVAIMGASGAGKSTLLAAL 33
LV + G +G+GKST LAA+
Sbjct: 125 LVLVTGPTGSGKSTTLAAM 143
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 29.2 bits (66), Expect = 1.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ I SG GKSTLL +
Sbjct: 74 IGIFAGSGVGKSTLLGMICN 93
>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural
genomics, NPPSFA; 2.80A {Sulfolobus tokodaii}
Length = 180
Score = 28.8 bits (64), Expect = 1.7
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 193
S+++++ R S RK+ +L ++ + +
Sbjct: 137 SQISSNEILGFGRVSHSTRKELILGIVNLTNGK 169
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 29.1 bits (66), Expect = 1.7
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 15 LVAIMGASGAGKSTLLAAL 33
L+ + G +G+GKST +A++
Sbjct: 138 LILVTGPTGSGKSTTIASM 156
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 28.9 bits (65), Expect = 1.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ + SG GKS LL +++
Sbjct: 160 MGLFAGSGVGKSVLLGMMAR 179
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 29.1 bits (66), Expect = 1.9
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
L+ I+G + +GK+ L ++++ + II GD
Sbjct: 8 FLIVIVGPTASGKTELSIEVAKKFNGE-IISGD 39
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.5 bits (63), Expect = 2.0
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD 40
+V + G G G +T L +
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKE 30
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.1
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 85 ALLKLDRRVKAY---QRIAL-INSLLIE 108
AL KL +K Y AL I + +E
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKA-TME 47
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 28.6 bits (64), Expect = 2.1
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD 40
+ G +GK+T L + ++P+
Sbjct: 17 IVYYGPGLSGKTTNLKWIYSKVPEG 41
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 28.4 bits (64), Expect = 2.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
L+AI G GAGK TL+ LS
Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGAF 24
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding,
ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE
PG4; 1.60A {Sulfolobus tokodaii}
Length = 213
Score = 28.4 bits (64), Expect = 2.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL 37
G L+A G G+GKS+ L +
Sbjct: 4 GVLIAFEGIDGSGKSSQATLLKDWI 28
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.1 bits (62), Expect = 2.5
Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 32/193 (16%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
V + G G GK+TL+ S+ L + G+
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIG--------------- 48
Query: 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 135
+ + L R + + + R+G +
Sbjct: 49 ------FDVVTLSGTRGPLSRVGLEPPPGK---------RECRVGQYVVDLTSFEQLALP 93
Query: 136 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 195
+ + + DE G + I+ +R+ S +L TI P + +
Sbjct: 94 VLRNADCSSGPGQRVCVIDE--IGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL 151
Query: 196 DMFDKIILLADSR 208
+ ++I D +
Sbjct: 152 ALVEEIRNRKDVK 164
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase
1; transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 28.6 bits (64), Expect = 2.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 20 GASGAGKSTLLAALSQRLPDDCI----IDGD 46
G SGAGK+T+ AL + L I +DGD
Sbjct: 59 GLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 28.7 bits (65), Expect = 2.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 16 VAIMGASGAGKSTLLAALS 34
V ++G AGKS+LLAA++
Sbjct: 160 VGLVGYPNAGKSSLLAAMT 178
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.4 bits (63), Expect = 2.7
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 16 VAIMGASGAGKSTLLAALSQRL-PDDCI-IDGDIRVNGKPVEGKFRSACGF-----MYQH 68
+ +MG SG+GKS++ + + D + I V + +F Q
Sbjct: 6 LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHL--RFLGNMTLNLWDCGGQD 63
Query: 69 DLFSPSLTVYEHLYF 83
T + F
Sbjct: 64 VFMENYFTKQKDHIF 78
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 28.0 bits (63), Expect = 2.9
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG 45
G+ G + G GAGK+T L RL + G
Sbjct: 19 PGSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAG 57
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 27.9 bits (63), Expect = 3.0
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 15/50 (30%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIID------GD-----IRVNGKPV 54
+ ++GA G GKS AL+ +L + +D D + ++G+
Sbjct: 24 LVVVGAGGVGKS----ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETC 69
>4edh_A DTMP kinase, thymidylate kinase; structural genomics,
PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas
aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 3uwk_A* 3uwo_A*
3uxm_A*
Length = 213
Score = 27.9 bits (63), Expect = 3.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPD 39
A++G V + G GAGKST L++RL +
Sbjct: 3 AMTGLFVTLEGPEGAGKSTNRDYLAERLRE 32
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 28.0 bits (63), Expect = 3.1
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL 37
G L+ G +GK+T + + +
Sbjct: 4 GALIVFEGLDKSGKTTQCMNIMESI 28
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR
kinase/phosphatase, HPRK/P, P-loop, walker A BOX,
catabolite repression; 2.50A {Mycoplasma pneumoniae}
SCOP: c.98.2.1 c.91.1.2
Length = 312
Score = 28.4 bits (63), Expect = 3.1
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH--DL 70
G V + G SG GKS L + + + GD + + + + + ++
Sbjct: 147 GVGVLLTGRSGIGKSECALDLINK---NHLFVGDDAIEIYRLGNRLFGRAQEVAKKFMEI 203
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
+ E Y + K I L+ +LL R+G
Sbjct: 204 RGLGIINVERFY------GLQITKQRTEIQLMVNLLSLEKQTTVTFERLG 247
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 27.6 bits (62), Expect = 3.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCII 43
G L+ I G GK+T L ++L +C +
Sbjct: 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKL 35
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 27.5 bits (60), Expect = 3.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
L+A SG GK+TLL L L
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPAL 30
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 28.1 bits (62), Expect = 3.9
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 18 IMGASGAGKSTL----LAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSP 73
I G +G GK+ + L+ L ++ + +N + ++ +R + D+ P
Sbjct: 50 IYGLTGTGKTAVVKFVLSKLHKKFLGKFKH---VYINTRQIDTPYRVLADLLESLDVKVP 106
Query: 74 SLTVYEHLYFMALLKLDRRVKAYQRIAL 101
+ + L+K R + I L
Sbjct: 107 FTGLSIAELYRRLVKAVRDYGSQVVIVL 134
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 27.8 bits (61), Expect = 4.0
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTV 77
++G SG GKSTL+ +L G K V+ + + + LT+
Sbjct: 13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK---VLIKEGGVQLLLTI 69
Query: 78 YE 79
+
Sbjct: 70 VD 71
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 27.6 bits (62), Expect = 4.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRL 37
AA G L+ + G AGKST L + L
Sbjct: 5 AARRGALIVLEGVDRAGKSTQSRKLVEAL 33
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 27.9 bits (63), Expect = 4.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 16 VAIMGASGAGKSTLLAALS 34
V ++G GKSTLL+ +S
Sbjct: 161 VGLVGFPSVGKSTLLSVVS 179
>1a79_A TRNA endonuclease; 2.28A {Methanocaldococcus jannaschii} SCOP:
c.52.2.1 d.75.1.1
Length = 171
Score = 27.3 bits (60), Expect = 4.2
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
SF S+L +R S RKK ++ +
Sbjct: 129 SSFLLSELTGFVRVAHSVRKKLLIAIVDADGD 160
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
helicase, acetyltransferase, GCN5 acetyltransferase;
HET: ACO ADP; 2.35A {Escherichia coli K12}
Length = 671
Score = 28.1 bits (62), Expect = 4.3
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCII 43
A+ A G GKS L L R+ I+
Sbjct: 195 AAVTAARGRGKSALAGQLISRIAGRAIV 222
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 27.9 bits (61), Expect = 4.5
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 1 MTELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCII 43
TE+ + V I G G GK+T L D I+
Sbjct: 37 ATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIV 79
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 27.6 bits (62), Expect = 4.7
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL 37
G + G +GKST L + L
Sbjct: 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 27.7 bits (60), Expect = 4.7
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
+ G G+GKS + L
Sbjct: 33 FIFFSGPQGSGKSFTSIQIYNHL 55
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 27.4 bits (62), Expect = 4.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+AI+G GKSTLL L
Sbjct: 11 IAIVGRPNVGKSTLLNKL 28
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 27.2 bits (61), Expect = 4.9
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 15/50 (30%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIID------GD-----IRVNGKPV 54
+ ++GA G GKS AL+ +L + +D D + ++G+
Sbjct: 7 LVVVGADGVGKS----ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETC 52
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 27.2 bits (60), Expect = 5.8
Identities = 6/44 (13%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 16 VAIMGASGAGKSTLLAALSQRL-PDDCI-IDGDIRVNGKPVEGK 57
+ +MG +GKS++ + ++ P++ + ++ ++ +
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNS 66
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.1 bits (60), Expect = 6.1
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 11/49 (22%)
Query: 16 VAIMGASGAGKSTLL-------AALSQRLP---DDCIIDGDIRVNGKPV 54
V ++G G GKS+ + + + G +
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRP-VMVSRTMGGFTI 86
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 26.7 bits (60), Expect = 6.1
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 15/50 (30%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIID------GD-----IRVNGKPV 54
+ ++GA G GKS AL+ +L + +D D + ++G+
Sbjct: 6 LVVVGAGGVGKS----ALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETC 51
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 27.2 bits (61), Expect = 6.2
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ I+G + +GK++L +L+
Sbjct: 182 IGIVGYTNSGKTSLFNSLTG 201
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 27.2 bits (60), Expect = 6.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 16 VAIMGASGAGKSTLL 30
+ +MG G GKS+ +
Sbjct: 42 ILVMGKGGVGKSSTV 56
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in
diseases, center for structural genomics of infectious
DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio
cholerae o1 biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 26.8 bits (60), Expect = 7.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 10 ALSGTLVAIMGASGAGKSTLLAALSQRL 37
A++ + I G GAGKST + + + L
Sbjct: 24 AMNAKFIVIEGLEGAGKSTAIQVVVETL 51
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 26.7 bits (60), Expect = 7.1
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 15/50 (30%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIID------GD-----IRVNGKPV 54
+ ++G G GKS AL+ + +D D ++ +
Sbjct: 21 LVVVGDGGVGKS----ALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWA 66
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding,
lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB:
2ist_A 1qyu_A 1prz_A
Length = 325
Score = 27.1 bits (61), Expect = 7.1
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 31 AALSQRLPD-------DCIIDGDIRVNGKPVE 55
AL++ PD + I+D + VNGK +
Sbjct: 21 QALAEMFPDYSRSRIKEWILDQRVLVNGKVCD 52
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 27.1 bits (60), Expect = 7.4
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGD 46
L I G + +GK+ + ++Q ++ D
Sbjct: 3 LHLIYGPTCSGKTDMAIQIAQETGWP-VVALD 33
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 26.8 bits (60), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 16 VAIMGASGAGKSTLL 30
+AI G +G GKS L+
Sbjct: 31 LAIFGRAGVGKSALV 45
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET:
GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Length = 447
Score = 27.3 bits (59), Expect = 7.6
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDC 41
V++ GA GKS L+ + + + +
Sbjct: 69 AVSVAGAFRKGKSFLMDFMLRYMYNQE 95
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 26.6 bits (59), Expect = 7.7
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+ I G +GK++LL L
Sbjct: 51 IIIAGPQNSGKTSLLTLL 68
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 26.6 bits (59), Expect = 8.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+ I G +GK++LL L
Sbjct: 15 IIIAGPQNSGKTSLLTLL 32
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 26.4 bits (59), Expect = 8.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 16 VAIMGASGAGKSTLL 30
+AI+G GAGKS L
Sbjct: 24 LAILGRRGAGKSALT 38
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S
rRNA, 30S ribosome ASSE GTP-binding,
nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus}
PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 26.7 bits (60), Expect = 8.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 16 VAIMGASGAGKSTLLAAL 33
VAI+G GKSTLL L
Sbjct: 13 VAIVGKPNVGKSTLLNNL 30
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 26.7 bits (59), Expect = 8.9
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD----CIIDGDIRVN 50
+A+ G G GK+T+ A L + + D +DGD
Sbjct: 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSC 41
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 26.3 bits (59), Expect = 9.1
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 15/50 (30%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIID------GD-----IRVNGKPV 54
+ ++G G GKS AL+ + + D V+G P
Sbjct: 12 LVVVGGGGVGKS----ALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPA 57
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 26.9 bits (60), Expect = 9.3
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 4 LELTGAALSG-----TLVAIMGASGAGKSTLLAALSQRLP 38
L+L+ AL + SG G+ T+ AA+ + +P
Sbjct: 280 LDLSATALLDSPDLQEFQGRVSDSGEGRWTVAAAIDEGVP 319
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 27.0 bits (60), Expect = 9.3
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAAL 33
LV + G G GKST A+
Sbjct: 200 QLAGHRLVVLTGGPGTGKSTTTKAV 224
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 26.7 bits (60), Expect = 9.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 16 VAIMGASGAGKSTLLAAL 33
VAI+G GKSTLL L
Sbjct: 10 VAIVGKPNVGKSTLLNNL 27
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 26.4 bits (59), Expect = 9.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 16 VAIMGASGAGKSTLL 30
V I+G +GKS L+
Sbjct: 23 VGIVGNLSSGKSALV 37
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO
center for structural genomics, JCSG, protein structure
INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 26.6 bits (58), Expect = 9.9
Identities = 9/53 (16%), Positives = 18/53 (33%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK 57
E+ + T + I+G G G + + +D +G+ G
Sbjct: 44 EVIARRGNATRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYYGL 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.387
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,353,571
Number of extensions: 259571
Number of successful extensions: 1221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1173
Number of HSP's successfully gapped: 292
Length of query: 290
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 197
Effective length of database: 4,105,140
Effective search space: 808712580
Effective search space used: 808712580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)