RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2520
(290 letters)
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 117 bits (295), Expect = 3e-32
Identities = 59/213 (27%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
G VA +G SG GKSTL+ + R D + G I ++G ++ R+ G + Q
Sbjct: 43 KGETVAFVGMSGGGKSTLINLIP-RFYD--VTSGQILIDGHNIKDFLTGSLRNQIG-LVQ 98
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
D S TV E++ D V ++A + ++ L T +G +
Sbjct: 99 QDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLP--QGYDTEVGERGVK-- 154
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+++RLS A L +P +L+ DE T+ LD S S + + L + +T L
Sbjct: 155 --LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL--SKDRTTLIVA 210
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I DKI+++ + G+ +A
Sbjct: 211 HRLST--ITHADKIVVIENGHIVETGTHRELIA 241
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 116 bits (291), Expect = 6e-32
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 20/204 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGF 64
G V+IMG SG+GKST+L + +G++ ++ R GF
Sbjct: 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGF 87
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P LT E++ + K + +R L L +
Sbjct: 88 VFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ-- 145
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+++R++ A L +P ++L D+PT LDS + K+++++++L + KTV+
Sbjct: 146 -----LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 185 CTIHQPSSELIDMFDKIILLADSR 208
H + ++II L D
Sbjct: 201 VVTHDI--NVARFGERIIYLKDGE 222
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 115 bits (290), Expect = 1e-31
Identities = 45/206 (21%), Positives = 86/206 (41%), Gaps = 17/206 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDL 70
G + ++G SG GK+T L ++ +G I + V ++Q
Sbjct: 32 GEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYA 88
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P +TVYE++ F + ++ + + L + + L
Sbjct: 89 VWPHMTVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQ--------L 137
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGG+R+R++ A ++ +P +LL DEP + LD+ + +++L + K T + H
Sbjct: 138 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 197
Query: 191 SSELIDMFDKIILLADSRTAFIGSKD 216
E + M D+I ++ + IGS
Sbjct: 198 -VEAMTMGDRIAVMNRGQLLQIGSPT 222
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 115 bits (289), Expect = 2e-31
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 13/210 (6%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G VA++G SG+GKST+ + + R D+ I D + R+ + Q+
Sbjct: 41 GKTVALVGRSGSGKSTIASLI-TRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH 99
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
Y +++ R+A + ++ N T IG + + L
Sbjct: 100 LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD--NGLDTIIGENGVL----L 153
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGG+R+R++ A LL D +L+ DE T+ LD+ S + + EL Q+ +T L H+
Sbjct: 154 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVIAHRL 211
Query: 191 SSELIDMFDKIILLADSRTAFIGSKDAALA 220
S I+ D+I+++ D G+ LA
Sbjct: 212 S--TIEQADEIVVVEDGIIVERGTHSELLA 239
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 111 bits (279), Expect = 6e-30
Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 28/219 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF-----RSACGFMYQ 67
G + I+G +G+GKSTL+ ++ L D +G + K + K +Q
Sbjct: 30 GDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQ 86
Query: 68 HDLFSPSLTVYEHLYF----------MALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
+TV E+L +L K + + +L L L +
Sbjct: 87 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR 146
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
+ G LSGG+ K + L+T+P +++ DEP G+ A + + EL
Sbjct: 147 KAGE--------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK- 197
Query: 178 QRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
+ T L H+ +++ D + ++ + + G +
Sbjct: 198 AKGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGE 235
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 109 bits (273), Expect = 8e-29
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 23/208 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G ++AI G++G+GK++LL + L +G I+ +G+ F Q
Sbjct: 62 GEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR---------VSFCSQFSWIM 109
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
P T+ E++ F R + L + +T +G +T LSG
Sbjct: 110 PG-TIKENIIFGVSYDEYRYKSVVKACQLQQDIT---KFAEQDNTVLGEGGVT----LSG 161
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G+R R+S A + D L L D P LD F+ ++ KT + +
Sbjct: 162 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSKM-- 218
Query: 193 ELIDMFDKIILLADSRTAFIGSKDAALA 220
E + DKI++L + F G+ +
Sbjct: 219 EHLRKADKILILHQGSSYFYGTFSELQS 246
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 107 bits (269), Expect = 2e-28
Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 31/221 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---------------- 56
G +++I+G+SG+GKST L ++ L +G I VNG+ +
Sbjct: 28 GDVISIIGSSGSGKSTFLRCIN-FLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQL 84
Query: 57 -KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
R+ ++QH +TV E++ + + + L ++G+
Sbjct: 85 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERA 142
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+ LSGG+++R+S A L +P +LL DEPT+ LD +++R+M++
Sbjct: 143 QGKYPVH-------LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ- 194
Query: 176 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
++ KT++ H+ + +I L + G +
Sbjct: 195 LAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPE 234
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 105 bits (264), Expect = 6e-28
Identities = 47/211 (22%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G + ++GASGAGKSTL+ ++ +G + V+G+ + K R G +
Sbjct: 31 GQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMI 87
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+QH S TV+ ++ L + + LL +GL + + +
Sbjct: 88 FQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGDKHDSYPSN---- 140
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGG+++R++ A L ++P +LLCDE T+ LD + ++ +++++ + T+L
Sbjct: 141 ----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL 196
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
H+ + + D + ++++ +
Sbjct: 197 ITHEM-DVVKRICDCVAVISNGELIEQDTVS 226
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 105 bits (264), Expect = 6e-28
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 15/206 (7%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G +V ++GA+GAGK+T L+A++ + II + KP R + +
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR 91
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P LTVYE+L A + D+ + + I SL L G+ L
Sbjct: 92 IFPELTVYENLMMGAYNRKDKE-GIKRDLEWIFSLF--PRLKERLKQLGGT--------L 140
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGGE++ L+ L++ P LL+ DEP+ GL S++ +++++ +Q T+L
Sbjct: 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLVEQNA 199
Query: 191 SSELIDMFDKIILLADSRTAFIGSKD 216
+ + +L + G
Sbjct: 200 -LGALKVAHYGYVLETGQIVLEGKAS 224
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 105 bits (263), Expect = 7e-28
Identities = 42/207 (20%), Positives = 91/207 (43%), Gaps = 19/207 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHD 69
G + ++G +GAGK+T L +S + G + V GK V + R ++ +
Sbjct: 28 GEIFGLIGPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEVRKLISYLPEEA 84
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
++ E+L F+A + + ++ GL R+ +
Sbjct: 85 GAYRNMQGIEYLRFVAGF---YASSSSEIEEMVERATEIAGLGEKIKDRVST-------- 133
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
S G ++L A L+ +P L + DEPT+GLD +A ++ +++++ + + ++ + +
Sbjct: 134 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 193
Query: 190 PSSELIDMFDKIILLADSRTAFIGSKD 216
E+ + D+I L+ + G+ +
Sbjct: 194 --LEVEFLCDRIALIHNGTIVETGTVE 218
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 105 bits (263), Expect = 9e-28
Identities = 46/213 (21%), Positives = 94/213 (44%), Gaps = 18/213 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
G ++ I+G SG+GKSTL + + + + ++G + R G + Q
Sbjct: 28 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENG---QVLIDGHDLALADPNWLRRQVGVVLQ 84
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
D + ++ +++ +V ++A + + EL + +
Sbjct: 85 -DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG---- 139
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ + +TV+
Sbjct: 140 --LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI--CKGRTVIIIA 195
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S + D+II++ + G L+
Sbjct: 196 HRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 105 bits (263), Expect = 1e-27
Identities = 43/213 (20%), Positives = 84/213 (39%), Gaps = 15/213 (7%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
G + A++G +G+GKST+ A L + ++GKP+ + Q
Sbjct: 39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGG---QLLLDGKPLPQYEHRYLHRQVAAVGQ 95
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
Y + + A + +S + GL T + +
Sbjct: 96 EPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFI--SGLPQGYDTEVDEAGSQ-- 151
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+ ++ A L+ P +L+ D+ T+ LD+ S ++ +++ E + ++VL
Sbjct: 152 --LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLIT 209
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
S L++ D I+ L G+ +
Sbjct: 210 QHLS--LVEQADHILFLEGGAIREGGTHQQLME 240
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 103 bits (258), Expect = 5e-27
Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
+++A G SG GKST+ + L + G+I ++G+P++ +RS GF+ Q
Sbjct: 28 NSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQD 84
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
Y + D + +A S + + + +T +G +
Sbjct: 85 SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM--PDQLNTEVGERGVK--- 139
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
+SGG+R+RL+ A L +P +L+ DE T LDS S S + + + L + +T L H
Sbjct: 140 -ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL--MKGRTTLVIAH 196
Query: 189 QPSSELIDMFDKIILLADSRTAFIGSKDAALA-------FLESQ 225
+ S+ I DKI + + G + +A ++ Q
Sbjct: 197 RLST--IVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 102 bits (255), Expect = 1e-26
Identities = 51/219 (23%), Positives = 85/219 (38%), Gaps = 33/219 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G ++ ++G +GAGKSTLLA ++ G I+ G+P+E K ++ Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQ 80
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
+ V+ +L K R L+N + L L +
Sbjct: 81 QTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRSTNQ------- 125
Query: 129 VLSGGERKRLSFATELL-------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGGE +R+ A +L LLL DEP LD S L +++ L Q+
Sbjct: 126 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC-QQGL 183
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
++ + H + + + LL + G ++ L
Sbjct: 184 AIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVLT 221
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 101 bits (252), Expect = 2e-26
Identities = 40/193 (20%), Positives = 83/193 (43%), Gaps = 23/193 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G +V G +G GK+TLL +S L +I NG P+ K + F+ + +
Sbjct: 26 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKG---EIIYNGVPIT-KVKGKIFFLPEEIIV 81
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
++V ++L +A L + K I L + +++ + ++G LS
Sbjct: 82 PRKISVEDYLKAVASLYGVKVNKNE-----IMDALESVEVLDLKK-KLG--------ELS 127
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
G +R+ A+ LL + + + D+P +D S K+++ + E+ ++ ++ + +
Sbjct: 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-- 185
Query: 192 SELIDMFDKIILL 204
+ D L
Sbjct: 186 ---LSYCDVNENL 195
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 101 bits (252), Expect = 3e-26
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 17/206 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDL 70
G V +G SG GKSTLL ++ D+ + K + G ++Q
Sbjct: 26 GEFVVFVGPSGCGKSTLLRMIAGLETITSG---DLFIGEKRMNDTPPAERGVGMVFQSYA 82
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P L+V E++ F L ++ QR+ N + L L + + + L
Sbjct: 83 LYPHLSVAENMSFGLKLAGAKKEVINQRV---NQVAEVLQLAHLLDRKPKA--------L 131
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGG+R+R++ L+ +P++ L DEP + LD+ ++ + L + +T++ H
Sbjct: 132 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 191
Query: 191 SSELIDMFDKIILLADSRTAFIGSKD 216
E + + DKI++L R A +G
Sbjct: 192 -VEAMTLADKIVVLDAGRVAQVGKPL 216
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 94.2 bits (234), Expect = 1e-23
Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 23/212 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--------CGF 64
G + ++G SG GK+T L ++ I + K V +
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRG---QIYIGDKLVADPEKGIFVPPKDRDIAM 85
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P +TVY+++ F L R+V + + + LGL + +
Sbjct: 86 VFQSYALYPHMTVYDNIAFPLKL---RKVPRQEIDQRVREVAELLGLTELLNRKPRE--- 139
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+R+R++ ++ P + L DEP + LD+ ++ +++L Q T +
Sbjct: 140 -----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
H E + M D+I ++ +GS D
Sbjct: 195 YVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 86.3 bits (213), Expect = 1e-20
Identities = 45/211 (21%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC-------GFM 65
G I+G SGAGK+T + ++ G++ + + V + G +
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDVPST---GELYFDDRLVASNGKLIVPPEDRKIGMV 87
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+Q P+LT +E++ F + + +R+ + L + + +
Sbjct: 88 FQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV---EEVAKILDIHHVLNHFPRE---- 140
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSG +++R++ A L+ DP+LLL DEP + LD+ +++E+ S+ T+L
Sbjct: 141 ----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
H P +++ + D++ +L + +G +
Sbjct: 197 VSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 85.9 bits (212), Expect = 1e-20
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 20/206 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF--RSACGFMYQHDL 70
G I+G +GAGK+ L ++ D I ++GK V + F+YQ+
Sbjct: 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSG---RILLDGKDVTDLSPEKHDIAFVYQNYS 82
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P + V ++L F +K + K + +L + + + L
Sbjct: 83 LFPHMNVKKNLEFGMRMKKIKDPKR------VLDTARDLKIEHLLDRNPLT--------L 128
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGGE++R++ A L+T+P +LL DEP + LD + M+ L + K TVL H
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 191 SSELIDMFDKIILLADSRTAFIGSKD 216
+E M D+I ++ D + +G +
Sbjct: 189 -TEARIMADRIAVVMDGKLIQVGKPE 213
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 79.7 bits (196), Expect = 3e-18
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 19/206 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE--GKFRSACGFMYQHDL 70
++G +GAGKS L ++ + D G++R+NG + R GF+ Q
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYA 80
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P L+VY ++ + R V+ +R + + +LG+ + + L
Sbjct: 81 LFPHLSVYRNIAYG-----LRNVERVERDRRVREMAEKLGIAHLLDRKPAR--------L 127
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGGER+R++ A L+ P LLL DEP + +D + L+ +R + + +L H
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 191 SSELIDMFDKIILLADSRTAFIGSKD 216
E + D++ ++ + R G
Sbjct: 188 -IEAAMLADEVAVMLNGRIVEKGKLK 212
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 57.7 bits (138), Expect = 8e-11
Identities = 19/201 (9%), Positives = 50/201 (24%), Gaps = 39/201 (19%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
+ I G G GK+TL+ + +RL + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIF 59
Query: 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 135
+ + V+ ++
Sbjct: 60 SSKFFTSKKLVGSYGVNVQYFE--------------------------------ELAIPI 87
Query: 136 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 195
++ +++ DE K ++R++ V+ TI ++
Sbjct: 88 LERAYREAKKDRRKVIIIDEIGKMELFS--KKFRDLVRQIMHDPNVNVVATIPIR--DVH 143
Query: 196 DMFDKIILLADSRTAFIGSKD 216
+ +I L + + ++
Sbjct: 144 PLVKEIRRLPGAVLIELTPEN 164
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 59.5 bits (142), Expect = 1e-10
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 113 NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 172
+ + S +++ L RL+ + L + +LL+ DEPT LD KLI +M
Sbjct: 270 EGKERPLTFLSGGERIALG--LAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIM 327
Query: 173 RELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204
++ V+ H EL D D +I +
Sbjct: 328 ERY-LKKIPQVILVSHDE--ELKDAADHVIRI 356
Score = 32.1 bits (71), Expect = 0.065
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALS 34
+ I+G +G+GKS+LL A+
Sbjct: 21 FKEGINLIIGQNGSGKSSLLDAIL 44
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 53.6 bits (127), Expect = 6e-09
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 139 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198
+ + L + +LL+ DEPT LD KLI +M ++ V+ H EL D
Sbjct: 217 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQVILVSHDE--ELKDAA 273
Query: 199 DKIILL 204
D +I +
Sbjct: 274 DHVIRI 279
Score = 34.7 bits (78), Expect = 0.010
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
+ I+G +G+GKS+LL A+ L
Sbjct: 25 INLIIGQNGSGKSSLLDAILVGL 47
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 45.7 bits (107), Expect = 1e-06
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGDI 47
L G ++ + G G+GKST+ AL+ + D
Sbjct: 2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 39
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 43.9 bits (102), Expect = 5e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
L I G +G GKST L+ +L + I+GDI
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI 36
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 43.4 bits (101), Expect = 6e-06
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G +V + G S GKST++ L +R+P+ +P E
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRF 58
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 41.0 bits (95), Expect = 5e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI 42
GTL + SGAGKS+L+ AL + P
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDT 31
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 41.6 bits (96), Expect = 6e-05
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 138 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 197
L FA + DE LD + ++ +R + + + + + +
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQ-FIVISLKN--TMFEK 401
Query: 198 FDKII 202
D ++
Sbjct: 402 SDALV 406
Score = 30.8 bits (68), Expect = 0.16
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 15 LVAIMGASGAGKSTLLAALS 34
+I+G +G+GKS ++ A+S
Sbjct: 27 FTSIIGPNGSGKSNMMDAIS 46
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 39.2 bits (90), Expect = 2e-04
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGDIRVNGKP 53
++ ++ + G S AGKS ++ L LP+ + D + P
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMP 44
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 38.8 bits (89), Expect = 3e-04
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD 40
V + G SGAGKSTLL L Q
Sbjct: 2 PVVLSGPSGAGKSTLLKKLFQEHSSI 27
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 38.0 bits (87), Expect = 4e-04
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD 40
+ I G SG GKSTLL L PD
Sbjct: 3 PIVISGPSGTGKSTLLKKLFAEYPDS 28
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 37.7 bits (86), Expect = 6e-04
Identities = 8/57 (14%), Positives = 20/57 (35%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G + I G G GK+++ ++ L ++ V ++ + +
Sbjct: 5 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEE 61
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 37.5 bits (86), Expect = 7e-04
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPD 39
+ ++GA G G+ + L + PD
Sbjct: 5 TLVLLGAHGVGRRHIKNTLITKHPD 29
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 37.3 bits (85), Expect = 8e-04
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR 48
+ +MG SG+GKS + + ++ +L + +
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH 41
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 36.8 bits (85), Expect = 0.001
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 10 ALSGTLVAIMGASGAGKSTLLAALSQR----LPDDCI----IDGDIRVNGKP 53
+ G V I G SG GKS L +R + DD + I D + P
Sbjct: 12 DVYGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRAP 63
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 37.6 bits (86), Expect = 0.001
Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD----IRVNGKPVEGKFR 59
L LT V + G G GKST + AL+ LP+ ++G V P
Sbjct: 19 LLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVL 78
Query: 60 SACGFMYQHDLFSPSLTVYEH 80
S + L V E
Sbjct: 79 STNVIRKPTPVVDLPLGVSED 99
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 36.6 bits (83), Expect = 0.001
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
SG VAI+G GKSTLL L I + K + G + D
Sbjct: 5 SGF-VAIVGKPNVGKSTLLNNLLGV--KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTP 61
Query: 72 SPSLTVYEHLYFM 84
+ FM
Sbjct: 62 GLHKPMDALGEFM 74
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 36.6 bits (83), Expect = 0.002
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
+AI+G GKSTLL L + I + + G D +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ--KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 65
Query: 76 TVYEHLYFM 84
+ +
Sbjct: 66 EEKRAINRL 74
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 36.5 bits (83), Expect = 0.002
Identities = 13/85 (15%), Positives = 26/85 (30%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPS 74
V I G G+GK+T L + D C++ + +
Sbjct: 11 TVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQ 70
Query: 75 LTVYEHLYFMALLKLDRRVKAYQRI 99
V + ++++K +R
Sbjct: 71 SYVTLTMLQSHTAPTNKKLKIMERS 95
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 36.7 bits (83), Expect = 0.002
Identities = 17/70 (24%), Positives = 28/70 (40%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPS 74
++ I G S +GK+TL LSQ L + I ++ VE R G + +
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQ 83
Query: 75 LTVYEHLYFM 84
V + +
Sbjct: 84 WDVEWLTHQL 93
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 35.9 bits (81), Expect = 0.002
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIID 44
++ +G G+GKST + P I+
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYNIN 33
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 36.2 bits (82), Expect = 0.002
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCI 42
VAI+G +GKS L+ L+
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFNTTSA 36
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 35.7 bits (81), Expect = 0.003
Identities = 17/145 (11%), Positives = 36/145 (24%), Gaps = 5/145 (3%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLP----DDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
TL+ ++G GK+ + L++ L + K +
Sbjct: 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEG 62
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
L L L N+ ++ + + G + + +
Sbjct: 63 LKIRKQCALAALN-DVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121
Query: 130 LSGGERKRLSFATELLTDPALLLCD 154
E + L P + D
Sbjct: 122 CVDPEVIAANIVQVKLGSPDYVNRD 146
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 35.1 bits (79), Expect = 0.004
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
V I+G GKSTL L ++
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKK 23
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 35.1 bits (79), Expect = 0.004
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
V I G AGKS+LL AL+ R
Sbjct: 4 VVIAGRPNAGKSSLLNALAGR 24
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 34.9 bits (80), Expect = 0.005
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 10 ALSGTLVAIMGASGAGKSTLLAALSQR----LPDD-CIIDGDIRVNGKPVEGK 57
+ G V I G SG GKS L QR + DD + + + + + G
Sbjct: 11 DIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVY---QQDEQTIVGA 60
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 34.9 bits (80), Expect = 0.005
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 10 ALSGTLVAIMGASGAGKSTLLAALSQR 36
+ G V + G SG GKS L +
Sbjct: 12 EVFGVGVLLTGRSGIGKSECALDLINK 38
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 34.9 bits (79), Expect = 0.005
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDI-RVNGKPVEGKFRSACGFMYQHDLFSPS 74
V I GA +GK T + + I GD+ R + A FM + L
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDE 65
Query: 75 LTVYEHLYFM 84
+ V +
Sbjct: 66 IVVNMVKERL 75
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 34.9 bits (79), Expect = 0.006
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV 49
L+ + G + +GKS++ A + Q L + + +V
Sbjct: 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQV 38
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 35.3 bits (81), Expect = 0.006
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD----CIIDGD 46
++++ G+SGAG ST+ Q + I+GD
Sbjct: 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 41
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 34.3 bits (77), Expect = 0.008
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI 42
G + + G +GK + AL L
Sbjct: 6 GFTIFLTGYMNSGKDAIARALQVTLNQQGG 35
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 34.5 bits (78), Expect = 0.008
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCII 43
G L+ I G GK+T L ++L +C +
Sbjct: 3 GKLILIEGLDRTGKTTQCNILYKKLQPNCKL 33
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 34.6 bits (79), Expect = 0.010
Identities = 12/96 (12%), Positives = 22/96 (22%), Gaps = 8/96 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCII------DGDIRVNGKPVEGKFRSAC--G 63
+ V I G G GK+T L D I+ + +
Sbjct: 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRL 62
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 99
+ ++ + M + I
Sbjct: 63 DQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHI 98
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 34.1 bits (77), Expect = 0.010
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
V ++G GKSTLL+ +S
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSA 24
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 33.9 bits (76), Expect = 0.011
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
+ G S GKSTL+ L+ +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGK 23
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 34.2 bits (78), Expect = 0.013
Identities = 9/103 (8%), Positives = 21/103 (20%), Gaps = 14/103 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCII-------DGDIRVNGKPVEGKFRS---- 60
+ + + G G GKST ++ + V
Sbjct: 5 TIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNR 64
Query: 61 ---ACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 100
+ L + ++ L + +
Sbjct: 65 KQQGNLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQ 107
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 33.5 bits (75), Expect = 0.014
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
V ++G AGKS+LLAA+++
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRA 24
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 33.5 bits (75), Expect = 0.015
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
VAI+G GKSTL A+ +
Sbjct: 11 VAIVGRPNVGKSTLFNAILNK 31
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 33.5 bits (75), Expect = 0.017
Identities = 16/89 (17%), Positives = 23/89 (25%), Gaps = 3/89 (3%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPS 74
L+AI G GAGK TL+ LS + P G+ +A
Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGR---SVATLAFPRYGQSVAADIAAEALHGEHGD 58
Query: 75 LTVYEHLYFMALLKLDRRVKAYQRIALIN 103
L + +
Sbjct: 59 LASSVYAMATLFALDRAGAVHTIQGLCRG 87
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 33.0 bits (74), Expect = 0.017
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
+ I+G GKSTLL L
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNE 23
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 33.3 bits (75), Expect = 0.018
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD-IRVNGKPVEGKFRSACGFMY 66
GA+ AIMGA G+GK T+ + +++ + GD +R N A F+
Sbjct: 1 GASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFID 60
Query: 67 QHDLFSPSLTVYEHLYFM 84
Q L + L+ +
Sbjct: 61 QGKLIPDDVMTRLVLHEL 78
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 33.0 bits (74), Expect = 0.022
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
+ + G G GK+TL L+ + I GD+ + +G + D
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDR 61
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 33.0 bits (74), Expect = 0.024
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
+V ++G G+GK T A + + + GD+
Sbjct: 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDL 40
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 32.8 bits (73), Expect = 0.028
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+ ++G GAGKST+ L+Q+L
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQL 26
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 32.7 bits (73), Expect = 0.029
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
+ I G +GK++LL L+
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTD 26
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 32.5 bits (73), Expect = 0.029
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
+ +MG GAGK T + ++ I GD+
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHISTGDM 34
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 32.6 bits (73), Expect = 0.029
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDI-RVNGKPVEGKFRSACGFMYQH 68
V ++G GAGK T L+++L I G++ R N + A ++
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAG 56
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 32.6 bits (73), Expect = 0.030
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPD 39
G L+ + G AGKST L + L
Sbjct: 3 GALIVLEGVDRAGKSTQSRKLVEALCA 29
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 32.4 bits (72), Expect = 0.032
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
VA G S AGKS+ L L+
Sbjct: 19 VAFAGRSNAGKSSALNTLTN 38
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 32.7 bits (73), Expect = 0.032
Identities = 10/70 (14%), Positives = 18/70 (25%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
V +G +GK+ L L D V ++ + S
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 76 TVYEHLYFMA 85
+ + A
Sbjct: 63 QLLDRFKSSA 72
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 32.6 bits (73), Expect = 0.033
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
+V + G G G +T L
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNL 25
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 32.4 bits (72), Expect = 0.033
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+A+ G S GKS+ + +L
Sbjct: 26 IALAGRSNVGKSSFINSL 43
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 32.6 bits (73), Expect = 0.035
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
V ++G GAGK T A + ++ + G++
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKYGYTHLSAGEL 35
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 32.6 bits (73), Expect = 0.040
Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 6/104 (5%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
+ I G GAGK+T + + L I D+ +P + + L
Sbjct: 2 SKYIVIEGLEGAGKTTARNVVVETLEQLGI--RDMVFTREP----GGTQLAEKLRSLLLD 55
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
E + A + + + +I L +
Sbjct: 56 IKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDR 99
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 32.3 bits (72), Expect = 0.047
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+ I G SGAGK TL A+++ L
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEAL 27
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 32.3 bits (72), Expect = 0.048
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI--------RVNGKPVEGKFRSACGFMY 66
++I G GKST + L++ P+ + + N K + M
Sbjct: 4 RLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMM 63
Query: 67 QHDLFSPSLTVYEHLYFMAL 86
+ S T + L
Sbjct: 64 YREPARWSYTFQTFSFLSRL 83
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 31.7 bits (71), Expect = 0.051
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
++G +GK+TL+ + G +
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 35
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 32.4 bits (72), Expect = 0.051
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCII 43
L + ++G GKS+++ L I
Sbjct: 27 LRAPITLVLGLRRTGKSSIIKIGINELNLPYIY 59
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 32.3 bits (72), Expect = 0.052
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR 48
++I G AGKST + L Q D ++ +
Sbjct: 2 IKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVA 37
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 31.9 bits (71), Expect = 0.061
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPD 39
+ + G G GKST+LA + + L +
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDN 27
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 31.9 bits (71), Expect = 0.067
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+AI G + +GKST+ +++
Sbjct: 6 IAIDGPASSGKSTVAKIIAKDF 27
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 31.9 bits (71), Expect = 0.067
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54
+ ++GT+ A++ GAGKS L L+ ++ + + PV
Sbjct: 22 VLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPV 70
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 31.4 bits (70), Expect = 0.071
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
+ +MG GAGK T + I GD+
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDM 34
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 31.9 bits (71), Expect = 0.071
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
V +G +G+GK+TL + L
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYL 24
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 31.4 bits (70), Expect = 0.071
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLP 38
+V +G GAGKST +
Sbjct: 15 EVVVAVGFPGAGKSTFIQEHLVSAG 39
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 31.6 bits (70), Expect = 0.081
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL 37
G V + G SGAGK+T+ AL + L
Sbjct: 19 GCTVWLTGLSGAGKTTVSMALEEYL 43
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 31.0 bits (69), Expect = 0.085
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+ +G G+GKSTL AL++ L
Sbjct: 3 IVFIGFMGSGKSTLARALAKDL 24
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 31.2 bits (69), Expect = 0.088
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ ++G +GK+T + ++
Sbjct: 5 LTLVGLQYSGKTTFVNVIAS 24
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 31.2 bits (69), Expect = 0.092
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ I G GK+TL L++
Sbjct: 8 LGIFGHIDHGKTTLSKVLTE 27
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 31.1 bits (69), Expect = 0.097
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
+ ++G GAGK T L +R + GD+
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDM 36
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 31.1 bits (69), Expect = 0.097
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
++G G+GKST+ L++ L
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKAL 25
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 31.3 bits (70), Expect = 0.10
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
+ +MG G GKS+ + ++
Sbjct: 35 ILVMGKGGVGKSSTVNSIIGE 55
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 30.7 bits (68), Expect = 0.10
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+ ++GA G G +T+ L++ L
Sbjct: 5 IFMVGARGCGMTTVGRELARAL 26
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 30.7 bits (68), Expect = 0.12
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
+++ ++G GAGK T L + + GD+
Sbjct: 9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDL 42
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 31.1 bits (69), Expect = 0.13
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALS 34
S AI+GA+G+GKS + A+
Sbjct: 24 FSKGFTAIVGANGSGKSNIGDAIL 47
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 30.7 bits (68), Expect = 0.13
Identities = 11/69 (15%), Positives = 19/69 (27%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
++G GAGK T L++ + GD+ +
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDE 65
Query: 76 TVYEHLYFM 84
V E +
Sbjct: 66 MVLELIEKN 74
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 30.7 bits (68), Expect = 0.13
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPD 39
+ ++G GK+TL AL+ D
Sbjct: 8 IGMVGHVDHGKTTLTKALTGVWTD 31
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 30.7 bits (68), Expect = 0.13
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
+A SG GK+TLL L L
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPAL 26
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 31.1 bits (69), Expect = 0.15
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 16 VAIMGASGAGKST----LLAALSQRLPDDCIIDGDIRVN 50
VAI G G GKST L + L ++ D + +
Sbjct: 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD 42
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 30.7 bits (69), Expect = 0.16
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 8/54 (14%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCI--------IDGDIRVNGKPVEGKFRSA 61
+ + GA G GK+T + + G+
Sbjct: 8 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGT 61
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 30.3 bits (67), Expect = 0.17
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
+ ++GA AGK T + ++ I GD+
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQISTGDM 34
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 30.6 bits (68), Expect = 0.18
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPD 39
V I G G GKST + AL L
Sbjct: 54 VGITGVPGVGKSTTIDALGSLLTA 77
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 30.4 bits (67), Expect = 0.20
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALS 34
S + AI+G +G+GKS ++ A+
Sbjct: 22 FSDRVTAIVGPNGSGKSNIIDAIK 45
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 30.1 bits (66), Expect = 0.21
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+ I+G GAGK+T+L L
Sbjct: 8 ILILGLDGAGKTTILYRL 25
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 30.0 bits (66), Expect = 0.21
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIID 44
+ ++G AGK+T+L + D
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISPT 33
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 29.9 bits (66), Expect = 0.22
Identities = 12/71 (16%), Positives = 24/71 (33%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSP 73
++ ++G G+GK T + Q+ + GD+ + + P
Sbjct: 9 KIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVP 68
Query: 74 SLTVYEHLYFM 84
TV + L
Sbjct: 69 LETVLDMLRDA 79
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 30.6 bits (68), Expect = 0.22
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPD 39
+ + G GAGKST L A L
Sbjct: 57 LGVTGTPGAGKSTFLEAFGMLLIR 80
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 30.2 bits (67), Expect = 0.23
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR 48
G + + G S +GKSTL L +L D +
Sbjct: 24 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 59
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 29.7 bits (65), Expect = 0.23
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ +G AGK+TLL L
Sbjct: 3 LLFLGLDNAGKTTLLHMLKN 22
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 30.5 bits (68), Expect = 0.24
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD 40
VA+ G +G+GKS+ + L ++
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEE 83
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b,
N-terminal (G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 30.0 bits (66), Expect = 0.27
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 16 VAIMGASGAGKSTLLAAL 33
V+++G GK+TLL +
Sbjct: 8 VSVLGHVDHGKTTLLDHI 25
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2),
N-terminal (G) domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 341
Score = 30.1 bits (67), Expect = 0.28
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
++++ GKSTL +L QR
Sbjct: 20 MSVIAHVDHGKSTLTDSLVQR 40
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 29.9 bits (66), Expect = 0.29
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPD 39
+ ++G GK+TL+ A++
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTS 34
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 30.1 bits (67), Expect = 0.30
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+ I AGK+T +
Sbjct: 9 IGIAAHIDAGKTTTTERI 26
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 29.2 bits (64), Expect = 0.32
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIID---GDIRVNGKPVEGKFRSACGFMYQHDLF 71
+ ++G AGK+T+L L I V K + G L+
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 29.2 bits (64), Expect = 0.37
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD 40
V + G G GK+TL+ S+ L
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSS 28
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 29.6 bits (65), Expect = 0.39
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALS 34
L + + G +GAGKST +AA
Sbjct: 22 LDELVTTLSGGNGAGKSTTMAAFV 45
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 29.0 bits (64), Expect = 0.42
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 16 VAIMGASGAGKSTLLAALSQR--------LPDDCIIDGDIRVNGKPVE 55
+ ++G SG GK+ +L S+ I ++GK ++
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK 56
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 29.4 bits (65), Expect = 0.43
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
+ G G+GKS + L
Sbjct: 29 FIFFSGPQGSGKSFTSIQIYNHL 51
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 29.3 bits (64), Expect = 0.44
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPS 74
V I+G SG GK++L+ + + + G K + ++ +
Sbjct: 5 VIILGDSGVGKTSLM----NQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 59
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 29.2 bits (65), Expect = 0.46
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 16 VAIMGASGAGKSTLLAALSQRL 37
V +G GK+TL AA+++ L
Sbjct: 6 VGTIGHVDHGKTTLTAAITKIL 27
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 28.7 bits (63), Expect = 0.48
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 16 VAIMGASGAGKSTLLAALSQ--------RLPDDCIIDGDIRVNGKPVEGKFRSACG 63
I+G G GKS LL ++ I V+G+ ++ + G
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 62
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 28.7 bits (63), Expect = 0.54
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 16 VAIMGASGAGKSTLLAAL--------SQRLPDDCIIDGDIRVNGKPVEGKFRSACG 63
V ++G SG GKS LL+ S+ I+V+GK ++ + G
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 62
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 29.1 bits (64), Expect = 0.55
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ ++G GKST +A +
Sbjct: 3 IGVVGKPNVGKSTFFSAATL 22
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 28.8 bits (63), Expect = 0.55
Identities = 11/65 (16%), Positives = 23/65 (35%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
+ ++G AGK+TLL L+ + +G + Q +
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWR 78
Query: 76 TVYEH 80
+ +E+
Sbjct: 79 SYFEN 83
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 29.2 bits (64), Expect = 0.57
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLL 30
+ T A G ++ + SG GKST +
Sbjct: 27 DKTLGARGGEVIMVTSGSGMGKSTFV 52
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 29.1 bits (64), Expect = 0.59
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 16 VAIMGASGAGKSTLLAAL 33
VA++G +G+GK+TL AL
Sbjct: 5 VALVGHAGSGKTTLTEAL 22
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 28.4 bits (62), Expect = 0.61
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
V ++G GK++L+ R ++ D I G K + G ++
Sbjct: 6 VVLLGEGCVGKTSLV----LRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 57
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.5 bits (62), Expect = 0.61
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 16 VAIMGASGAGKSTLL 30
V ++GA G GKS L
Sbjct: 4 VLLLGAPGVGKSALA 18
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.7 bits (63), Expect = 0.65
Identities = 10/81 (12%), Positives = 25/81 (30%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
G +++ GA+G GK+ L++ + + + + M
Sbjct: 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGM 78
Query: 66 YQHDLFSPSLTVYEHLYFMAL 86
++ +L Y +
Sbjct: 79 DFEEMERQNLLKIVCAYPESA 99
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.6 bits (63), Expect = 0.68
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 16 VAIMGASGAGKSTLLAALSQR--------LPDDCIIDGDIRVNGKPVE 55
+ ++G +G GK+ L+ +Q + + +NG+ V+
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK 55
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 28.8 bits (63), Expect = 0.73
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 5/104 (4%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
T + G G+GK++L +A+ + + I ID D +Y+ D+
Sbjct: 33 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH----PNFDELVKLYEKDVVK 88
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
+ + +L + + + +
Sbjct: 89 HVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQ 132
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 28.6 bits (63), Expect = 0.74
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
I+G GKST A+++
Sbjct: 13 TGIVGMPNVGKSTFFRAITK 32
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 28.2 bits (61), Expect = 0.76
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
V ++G G GKSTL + +D D V G+ + G L
Sbjct: 6 VVLIGEQGVGKSTLANIFAG---VHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 62
Query: 76 TVYEHLYFM 84
E+ +
Sbjct: 63 NKGENEWLH 71
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 28.5 bits (62), Expect = 0.77
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLP 38
L G +G++ + G GKS L L+
Sbjct: 27 LGGGVETGSITELFGEFRTGKSQLCHTLAVTCQ 59
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 28.4 bits (62), Expect = 0.78
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPS 74
++ I G G+GKST+ A L ++D D + F
Sbjct: 5 IIGITGNIGSGKSTVAALLRSW--GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLD 62
Query: 75 LTVYEHLYFM 84
L F
Sbjct: 63 RRALARLVFS 72
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 28.6 bits (62), Expect = 0.86
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLL 30
L G +G++ + G GK+ +
Sbjct: 16 LQGGIETGSITEMFGEFRTGKTQIC 40
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 28.1 bits (61), Expect = 0.87
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
V I+G SG GK++L+
Sbjct: 5 VIILGDSGVGKTSLMHRYVN 24
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 28.0 bits (61), Expect = 0.94
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD---CIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
+ ++G AGK+T+L L + V K V+ G L+
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 73
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 27.7 bits (60), Expect = 1.00
Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 8/77 (10%)
Query: 16 VAIMGASGAGKSTLLAALSQR--------LPDDCIIDGDIRVNGKPVEGKFRSACGFMYQ 67
+ ++G GKS+++ + ++ I+VN + V G
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 64
Query: 68 HDLFSPSLTVYEHLYFM 84
+ + +
Sbjct: 65 DAITKAYYRGAQACVLV 81
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 28.2 bits (61), Expect = 1.0
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 16 VAIMGAS-GAGKST----LLAALSQRLPDDCIIDGDIR 48
+ + G GK+T L AL+Q D I+D DI
Sbjct: 4 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 41
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.1 bits (61), Expect = 1.0
Identities = 9/54 (16%), Positives = 15/54 (27%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
+ +G AGK+TLL L + + G +
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQ 69
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Thermus thermophilus [TaxId:
274]}
Length = 204
Score = 28.0 bits (62), Expect = 1.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 16 VAIMGASGAGKSTLLAAL 33
V +G GK+TL AAL
Sbjct: 6 VGTIGHVDHGKTTLTAAL 23
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 27.7 bits (60), Expect = 1.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
V I+G AGK+T+L S
Sbjct: 18 VIIVGLDNAGKTTILYQFSM 37
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 27.9 bits (61), Expect = 1.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 16 VAIMGASGAGKST----LLAALSQRLPDDCIIDGDIRVN 50
AI G G GKST L+AAL++ I+ D + +
Sbjct: 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKAD 43
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 27.4 bits (59), Expect = 1.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 16 VAIMGASGAGKSTLL 30
+AI+G GKS+L
Sbjct: 7 IAILGYRSVGKSSLT 21
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.3 bits (59), Expect = 1.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 16 VAIMGASGAGKSTLL 30
+ ++G G GKS L
Sbjct: 9 LVVVGGGGVGKSALT 23
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 27.5 bits (60), Expect = 1.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ I+G S GK++ L +
Sbjct: 8 ILIIGNSSVGKTSFLFRYAD 27
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 27.3 bits (59), Expect = 1.5
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 16 VAIMGASGAGKSTLLAALSQR----LPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
+ ++G + GKS+++ + I + E + + F
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 72 SPSLTVYEHLYFMALL 87
+ +Y AL+
Sbjct: 66 ASLAPMYYRNAQAALV 81
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha,
N-terminal (G) domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 224
Score = 27.5 bits (60), Expect = 1.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+ ++G GKSTL+ L
Sbjct: 6 LIVIGHVDHGKSTLVGRL 23
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.5 bits (60), Expect = 1.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ I+G SG GKS+LL +
Sbjct: 10 ILIIGESGVGKSSLLLRFTD 29
>d1a79a1 c.52.2.1 (A:83-179) Tetrameric tRNA splicing endonuclease,
C-terminal domain {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 97
Score = 26.3 bits (58), Expect = 1.5
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
SF S+L +R S RKK ++ +
Sbjct: 55 SSFLLSELTGFVRVAHSVRKKLLIAIVDADG 85
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 27.7 bits (61), Expect = 1.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 15 LVAIMGASGAGKSTLLAALSQR 36
+VAI+G GKS L+ L+ +
Sbjct: 34 VVAIVGLYRTGKSYLMNKLAGK 55
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 27.3 bits (59), Expect = 1.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ ++G S GK+ L
Sbjct: 5 IIVIGDSNVGKTCLTYRFCA 24
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 27.5 bits (60), Expect = 1.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ ++G SG GKS LL S
Sbjct: 9 LLLIGNSGVGKSCLLLRFSD 28
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 27.2 bits (59), Expect = 1.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
++G +G GKS LL +
Sbjct: 8 FLVIGNAGTGKSCLLHQFIE 27
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.0 bits (59), Expect = 1.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ ++G SG GKS LL +
Sbjct: 5 ILLIGDSGVGKSCLLVRFVE 24
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.3 bits (59), Expect = 1.9
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLL 30
G G + G SG GK+
Sbjct: 19 SHGGLPIGRSTLVSGTSGTGKTLFS 43
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.6 bits (60), Expect = 1.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+ + GA+G GKS LL L
Sbjct: 53 LLVNGATGTGKSVLLREL 70
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 27.4 bits (59), Expect = 1.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 13 GTLVAIMGAS-GAGKST----LLAALSQRLPDDCIIDGDIR 48
G +++I+ G GK+T L AL R +DGD+
Sbjct: 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 27.3 bits (59), Expect = 2.0
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 15 LVAIMGASGAGKST----LLAALSQRLPDDCIIDGDIRVN 50
L+ +MG G GK+T + L+ D + D +
Sbjct: 22 LIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAH 61
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 27.1 bits (59), Expect = 2.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
+A++G AGKS++L R
Sbjct: 29 IAVVGGQSAGKSSVLENFVGR 49
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 27.4 bits (60), Expect = 2.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 15 LVAIMGASGAGKSTLLAALSQRL 37
+++I G+ GKST L L
Sbjct: 82 IISIAGSVAVGKSTTARVLQALL 104
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.9 bits (58), Expect = 2.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 16 VAIMGASGAGKSTLL 30
VA+ GA G GKS+L+
Sbjct: 5 VAVFGAGGVGKSSLV 19
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 27.0 bits (58), Expect = 2.3
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLL 30
L G S ++ G G+GK+ ++
Sbjct: 27 LGGGLESQSVTEFAGVFGSGKTQIM 51
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 27.1 bits (59), Expect = 2.4
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
+ ++G+ +GKS++L + R
Sbjct: 27 IVVVGSQSSGKSSVLENIVGR 47
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 27.0 bits (59), Expect = 2.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAALS 34
+E L G + + G SG GKS+LL A++
Sbjct: 86 IEELKEYLKGKISTMAGLSGVGKSSLLNAIN 116
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 27.1 bits (59), Expect = 2.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 16 VAIMGASGAGKSTLLAAL 33
+ +G AGKSTL +
Sbjct: 27 IVFIGHVDAGKSTLGGNI 44
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 26.8 bits (58), Expect = 2.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
V ++G SG GK+ LL
Sbjct: 9 VMLVGDSGVGKTCLLVRFKD 28
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 2.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 16 VAIMGASGAGKSTLL 30
+ ++G S GKS+L+
Sbjct: 9 LVLLGESAVGKSSLV 23
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 26.9 bits (58), Expect = 2.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ I+G GK+ LL S+
Sbjct: 5 LVIVGDGACGKTCLLIVNSK 24
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.9 bits (58), Expect = 2.5
Identities = 5/15 (33%), Positives = 12/15 (80%)
Query: 16 VAIMGASGAGKSTLL 30
+ ++G + +GKS+L+
Sbjct: 8 LGVLGDARSGKSSLI 22
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.5 bits (57), Expect = 2.6
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ ++G G GK+T +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLT 25
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 26.8 bits (58), Expect = 2.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
+ +G SG GK+T L +
Sbjct: 8 LLALGDSGVGKTTFLYRYTD 27
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 26.5 bits (57), Expect = 2.6
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 16 VAIMGASGAGKSTLL 30
V ++G +G GKS+++
Sbjct: 7 VCLLGDTGVGKSSIM 21
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus
influenzae [TaxId: 727]}
Length = 205
Score = 26.8 bits (58), Expect = 2.6
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVN 50
+V + G G+GK+T+ + ++D D+
Sbjct: 4 IVGLTGGIGSGKTTIANLFTDL--GVPLVDADVVAR 37
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.5 bits (57), Expect = 2.7
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 16 VAIMGASGAGKSTLL 30
+ ++G G GKS L
Sbjct: 7 LVVVGDGGVGKSALT 21
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 27.0 bits (58), Expect = 2.9
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLL 30
L G + + + G G+GK+ L
Sbjct: 29 LGGGIETQAITEVFGEFGSGKTQLA 53
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 2.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 16 VAIMGASGAGKSTLL 30
+ ++G G GKS L
Sbjct: 8 LVVVGGGGVGKSALT 22
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 26.6 bits (58), Expect = 3.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL 37
G +V ++G +G GK+T +A L +
Sbjct: 6 GRVVLVVGVNGVGKTTTIAKLGRYY 30
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 26.5 bits (57), Expect = 3.1
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
++G GK+ LL + +
Sbjct: 8 CVVVGDGAVGKTCLLISYTT 27
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 26.5 bits (57), Expect = 3.2
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 16 VAIMGASGAGKSTLL 30
+ +G GK++L+
Sbjct: 3 LVFLGEQSVGKTSLI 17
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.5 bits (57), Expect = 3.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 16 VAIMGASGAGKSTLL 30
+AI G +G GKS L+
Sbjct: 5 LAIFGRAGVGKSALV 19
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 26.4 bits (57), Expect = 3.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 16 VAIMGASGAGKSTLL 30
V ++G+ G GKS L
Sbjct: 7 VIMVGSGGVGKSALT 21
>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of
Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 26.3 bits (57), Expect = 3.2
Identities = 5/18 (27%), Positives = 5/18 (27%)
Query: 22 SGAGKSTLLAALSQRLPD 39
G K L PD
Sbjct: 15 LGPTKDRANDDLLSEFPD 32
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 26.5 bits (57), Expect = 3.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 16 VAIMGASGAGKSTLL 30
+ I+G GAGK+T+L
Sbjct: 20 ILILGLDGAGKTTIL 34
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 26.5 bits (57), Expect = 3.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 16 VAIMGASGAGKSTLL 30
+ ++GA G GKS L
Sbjct: 6 LVVVGAGGVGKSALT 20
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.4 bits (57), Expect = 3.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 16 VAIMGASGAGKSTLL 30
V ++G+ G GKS L
Sbjct: 6 VVVLGSGGVGKSALT 20
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 26.7 bits (58), Expect = 3.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 16 VAIMGASGAGKSTLLAALSQRLP 38
V ++GA+G GK+ +A + + L
Sbjct: 31 VTLLGATGTGKTVTMAKVIEALG 53
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 26.6 bits (57), Expect = 3.6
Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 4/107 (3%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD----IRVNGKPVEGKFRSACGFMYQH 68
+ +G G GK+TL +R+ + +G VN + + Q
Sbjct: 46 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQT 105
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
AL+ Y + L + +
Sbjct: 106 GYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAA 152
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 26.6 bits (57), Expect = 3.6
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLL 30
L G S + G GK+ L
Sbjct: 30 LGGGIESMAITEAFGEFRTGKTQLS 54
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.2 bits (56), Expect = 3.7
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 16 VAIMGASGAGKSTLL 30
+ ++G S GK+ LL
Sbjct: 5 IVVVGDSQCGKTALL 19
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 26.5 bits (57), Expect = 3.7
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 16 VAIMGASGAGKSTLL 30
+ ++GA +GKST++
Sbjct: 5 LLLLGAGESGKSTIV 19
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 26.3 bits (57), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV 49
+VA+ G G+GKST+ A + +ID DI
Sbjct: 5 IVALTGGIGSGKSTVANAFADL--GINVIDADIIA 37
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.2 bits (57), Expect = 3.9
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRL 37
++ ++G +G GK+T + L+++
Sbjct: 10 FVILMVGVNGVGKTTTIGKLARQF 33
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 26.4 bits (58), Expect = 4.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
I+G GKSTL AL++
Sbjct: 5 CGIVGLPNVGKSTLFNALTK 24
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.1 bits (56), Expect = 4.3
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 16 VAIMGASGAGKSTLL 30
+ ++G+ G GKS L
Sbjct: 6 LVVLGSGGVGKSALT 20
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.0 bits (56), Expect = 4.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 16 VAIMGASGAGKSTLL 30
+ ++GA +GKST L
Sbjct: 5 ILLLGAGESGKSTFL 19
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 140
Score = 25.8 bits (56), Expect = 4.3
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD-CIID 44
+ I+G G ST A L + + +ID
Sbjct: 3 IGIVGLGRVGSSTAFALLMKGFAREMVLID 32
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha,
N-terminal (G) domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 239
Score = 26.1 bits (57), Expect = 4.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 16 VAIMGASGAGKSTLLAAL 33
V ++G +GKST L
Sbjct: 9 VVVIGHVDSGKSTTTGHL 26
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.0 bits (56), Expect = 4.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 16 VAIMGASGAGKSTLL 30
I+G +G GKS LL
Sbjct: 6 YIIIGDTGVGKSCLL 20
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 26.1 bits (56), Expect = 4.6
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 16 VAIMGASGAGKSTLL 30
++G GK+ LL
Sbjct: 12 CVVVGDGAVGKTCLL 26
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.1 bits (56), Expect = 4.9
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 16 VAIMGASGAGKSTLLAALSQ 35
++G GK+ LL + +
Sbjct: 6 CVVVGDGAVGKTCLLISYTT 25
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 25.9 bits (56), Expect = 5.1
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRL 37
+ +L ++ ++G +G GK+T L++
Sbjct: 1 DTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 35
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 26.3 bits (57), Expect = 5.1
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 16 VAIMGASGAGKSTLLAALSQRLP 38
++GA+G GK+ ++ + ++
Sbjct: 34 QTLLGATGTGKTFTISNVIAQVN 56
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 25.7 bits (55), Expect = 5.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 16 VAIMGASGAGKSTLL 30
V ++G G GKS+L+
Sbjct: 9 VILLGDGGVGKSSLM 23
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.1 bits (56), Expect = 5.3
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 16 VAIMGASGAGKSTLL 30
+ ++G +GKST +
Sbjct: 5 LLLLGTGESGKSTFI 19
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 26.1 bits (56), Expect = 5.5
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD----CIIDGDIRVN 50
+ G G GK+++ A + RL + ++ D N
Sbjct: 11 LFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASN 49
>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 144
Score = 25.6 bits (55), Expect = 5.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
VA++GA+G+ L+ L +R
Sbjct: 5 VAVVGATGSVGEALVGLLDER 25
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 26.1 bits (57), Expect = 5.6
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGD 46
G + G SG GK+TL + L D+ D
Sbjct: 14 GDVAVFFGLSGTGKTTLSTDPERPLIGDDEHGWSED 49
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 25.9 bits (56), Expect = 6.2
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 16 VAIMGASGAGKSTLL 30
+ ++GA +GKST++
Sbjct: 9 LLLLGAGESGKSTIV 23
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 25.8 bits (56), Expect = 7.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD 40
G + G SG GK+TL +RL D
Sbjct: 14 GDVAVFFGLSGTGKTTLSTDPKRRLIGD 41
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 58
Score = 23.9 bits (52), Expect = 7.2
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 33 LSQRLPDDCIIDGDIRVNGKPVE 55
L++ I +++NG+ V+
Sbjct: 14 LTRSQATKAIRQSAVKINGEIVK 36
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.5 bits (55), Expect = 7.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRL 37
++ ++G G GK+T L+
Sbjct: 13 YVIMLVGVQGTGKATTAGKLAYFY 36
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 25.5 bits (55), Expect = 7.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRL 37
L ++G G+GK+T A L+
Sbjct: 11 NLWFLVGLQGSGKTTTAAKLALYY 34
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 25.0 bits (54), Expect = 8.1
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDC 41
+V + G GAGK+TL + Q +
Sbjct: 33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQG 61
>d1y1oa_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related
factor A (PrfA) {Bacillus stearothermophilus [TaxId:
1422]}
Length = 168
Score = 25.1 bits (55), Expect = 9.0
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 190 PSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPA-DFL 239
+S LI ++K G K +E G+ P GY P D++
Sbjct: 118 DASHLIAWWNKQEA--------GGRKSIPKQEIERHGHSIPLGYQPRLDYI 160
>d1rzna_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related
factor A (PrfA) {Bacillus subtilis [TaxId: 1423]}
Length = 165
Score = 24.7 bits (54), Expect = 9.9
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 213 GSKDAALAFLESQGYPCPYGYNPA-DFL 239
G K LE YP GY P D++
Sbjct: 130 GRKSIRKDELEETAYPISLGYAPRIDYI 157
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.387
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,027,733
Number of extensions: 46404
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 231
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)