BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2521
(783 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/722 (44%), Positives = 448/722 (62%), Gaps = 48/722 (6%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP V +DET DYHG KI DPY WLE P +T+ F QN I+ P+ +
Sbjct: 5 YPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQ--------- 55
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
P G+ KE++ + +Y KYS ++ YFYF+N
Sbjct: 56 ------------CPIRGL-------------YKERMTELYDYPKYSCHFKKGKRYFYFYN 90
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G++FAY LS SGSDW
Sbjct: 91 TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWV 150
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 295
T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +DGTET+ ++ QK+Y
Sbjct: 151 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNSYPQQDGKSDGTETSTNLHQKLY 210
Query: 296 YHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD----LHYFDLHS 351
YHVLGT+Q +DI EFP+ +E++D GRY+L+S +G D L Y DL
Sbjct: 211 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR---EGCDPVNRLWYCDLQQ 267
Query: 352 LPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWK 411
G I+G +I + ++ + N G KT +++P +V+ I+ +P E WK
Sbjct: 268 ESSG-IAGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRVINIDFTDPEESKWK 326
Query: 412 TLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 471
L+PE E L+ +A V +N L++ Y+ +V++ + LHDL TG L FPLD+G I SG
Sbjct: 327 VLVPEHEKDVLEWIACVRSNFLVLCYLHDVKNTLQLHDLTTGALLKIFPLDVGSIVGYSG 386
Query: 472 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYF 531
++K E+FY FTSFL PG IYHC++ +++ +P +FRE V + + +QT Q+++
Sbjct: 387 QKKDTEIFYQFTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFY 441
Query: 532 RSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIP 591
SKDGT++PM+I+H+ G + +P + +S+ P +S+SR +F+RH GI A+
Sbjct: 442 PSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGILAVA 501
Query: 592 NIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA 651
NIRGGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI GGSNGGLLV A
Sbjct: 502 NIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAA 561
Query: 652 CLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKV 711
C NQRP+L+G + VG +DML+F+K+TI + +++G ++K HF L+ YSPLHN+K+
Sbjct: 562 CANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLVKYSPLHNVKL 621
Query: 712 P-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 770
P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ +G Q NPLL+ V+ AGHG
Sbjct: 622 PEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGA 681
Query: 771 GK 772
GK
Sbjct: 682 GK 683
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/722 (44%), Positives = 446/722 (61%), Gaps = 48/722 (6%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVXDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQXPIRGLYKE 65
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
+ + + +Y KYS ++ YFYF+N
Sbjct: 66 R----------------------------------MTELYDYPKYSCHFKKGKRYFYFYN 91
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G++FAY LS SGSDW
Sbjct: 92 TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWV 151
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 295
T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +DGTET+ ++ QK+Y
Sbjct: 152 TIKFMKVDGAKELPDVLERVKFSXMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211
Query: 296 YHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD----LHYFDLHS 351
YHVLGT+Q +DI EFP+ +E++D GRY+L+S +G D L Y DL
Sbjct: 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR---EGXDPVNRLWYCDLQQ 268
Query: 352 LPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWK 411
+G I+G +I + ++ + N G KT +++P +++ I+ +P E WK
Sbjct: 269 ESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK 327
Query: 412 TLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 471
L+PE E L+ VA V +N L++ Y+ +V++ + LHDL TG L FPL++G + SG
Sbjct: 328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG 387
Query: 472 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYF 531
++K E+FY FTSFL PG IYHC++ +++ +P +FRE V + + +QT Q+++
Sbjct: 388 QKKDTEIFYQFTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFY 442
Query: 532 RSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIP 591
SKDGT++PM+I+H+ G + +P + +S+ P +S+SR +F+RH G+ A+
Sbjct: 443 PSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVA 502
Query: 592 NIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA 651
NIRGGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI GGSNGGLLV
Sbjct: 503 NIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAT 562
Query: 652 CLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKV 711
C NQRP+L+G + VG +DML+F+K+TI + +++G ++K HF L+ YSPLHN+K+
Sbjct: 563 CANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGXSDSKQHFEWLIKYSPLHNVKL 622
Query: 712 P-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 770
P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ +G Q NPLL+ V+ AGHG
Sbjct: 623 PEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGA 682
Query: 771 GK 772
GK
Sbjct: 683 GK 684
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/722 (44%), Positives = 448/722 (62%), Gaps = 48/722 (6%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ +
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQ--------- 56
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
P G+ KE++ + +Y KYS ++ YFYF+N
Sbjct: 57 ------------CPIRGL-------------YKERMTELYDYPKYSCHFKKGKRYFYFYN 91
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G++FAY LS SGSDW
Sbjct: 92 TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWV 151
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 295
T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +DGTET+ ++ QK+Y
Sbjct: 152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211
Query: 296 YHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD----LHYFDLHS 351
YHVLGT+Q +DI EFP+ +E++D GRY+L+S +G D L Y DL
Sbjct: 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR---EGCDPVNRLWYCDLQQ 268
Query: 352 LPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWK 411
+G I+G +I + ++ + N G KT +++P +++ I+ +P E WK
Sbjct: 269 ESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK 327
Query: 412 TLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 471
L+PE E L+ VA V +N L++ Y+ +V++ + LHDL TG L FPL++G + SG
Sbjct: 328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG 387
Query: 472 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYF 531
++K E+FY FTSFL PG IYHC++ +++ +P +FRE V + + +QT Q+++
Sbjct: 388 QKKDTEIFYQFTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFY 442
Query: 532 RSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIP 591
SKDGT++PM+I+H+ G + +P + +S+ P +S+SR +F+RH G+ A+
Sbjct: 443 PSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVA 502
Query: 592 NIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA 651
NIRGGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI GGSNGGLLV
Sbjct: 503 NIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAT 562
Query: 652 CLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKV 711
C NQRP+L+G + VG +DML+F+K+TI + +++G ++K HF L+ YSPLHN+K+
Sbjct: 563 CANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKL 622
Query: 712 P-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 770
P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ +G Q NPLL+ V+ AGHG
Sbjct: 623 PEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGA 682
Query: 771 GK 772
GK
Sbjct: 683 GK 684
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/722 (44%), Positives = 448/722 (62%), Gaps = 48/722 (6%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ +
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQ--------- 56
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
P G+ KE++ + +Y KYS ++ YFYF+N
Sbjct: 57 ------------CPIRGL-------------YKERMTELYDYPKYSCHFKKGKRYFYFYN 91
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G++FAY LS SGSDW
Sbjct: 92 TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWV 151
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 295
T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +DGTET+ ++ QK+Y
Sbjct: 152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211
Query: 296 YHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD----LHYFDLHS 351
YHVLGT+Q +DI EFP+ +E++D GRY+L+S +G D L Y DL
Sbjct: 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR---EGCDPVNRLWYCDLQQ 268
Query: 352 LPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWK 411
+G I+G +I + ++ + N G KT +++P +++ I+ +P E WK
Sbjct: 269 ESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK 327
Query: 412 TLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 471
L+PE E L+ VA V +N L++ Y+ +V++ + LHDL TG L FPL++G + SG
Sbjct: 328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG 387
Query: 472 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYF 531
++K E+FY FTSFL PG IYHC++ +++ +P +FRE V + + +QT Q+++
Sbjct: 388 QKKDTEIFYQFTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFY 442
Query: 532 RSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIP 591
SKDGT++PM+I+H+ G + +P + +S+ P +S+SR +F+RH G+ A+
Sbjct: 443 PSKDGTKIPMFIVHKKGIKLDGSHPAFLYGFGGFNISITPNYSVSRLIFVRHMGGVLAVA 502
Query: 592 NIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA 651
NIRGGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI GGSNGGLLV
Sbjct: 503 NIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAT 562
Query: 652 CLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKV 711
C NQRP+L+G + VG +DML+F+K+TI + +++G ++K HF L+ YSPLHN+K+
Sbjct: 563 CANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKL 622
Query: 712 P-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 770
P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ +G Q NPLL+ V+ AGHG
Sbjct: 623 PEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGA 682
Query: 771 GK 772
GK
Sbjct: 683 GK 684
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/722 (44%), Positives = 449/722 (62%), Gaps = 48/722 (6%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ +
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQ--------- 56
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
P G+ KE++ + +Y KYS ++ YFYF+N
Sbjct: 57 ------------CPIRGL-------------YKERMTELYDYPKYSCHFKKGKRYFYFYN 91
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G++FAY LS SGSDW
Sbjct: 92 TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWV 151
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 295
T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +DGTET+ ++ QK+Y
Sbjct: 152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211
Query: 296 YHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD----LHYFDLHS 351
YHVLGT+Q +DI VEFP+ +E++D GRY+L+S +G D L Y DL
Sbjct: 212 YHVLGTDQSEDILCVEFPDEPKWMGGAELSDDGRYVLLSIR---EGCDPVNRLWYCDLQQ 268
Query: 352 LPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWK 411
+G I+G +I + ++ + N G KT +++P +++ I+ +P E WK
Sbjct: 269 ESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK 327
Query: 412 TLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 471
L+PE E L+ VA V +N L++ Y+ +V++ + LHDL TG L FPL++G + SG
Sbjct: 328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG 387
Query: 472 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYF 531
++K E+FY FTSFL PG IYHC++ +++ +P +FRE V + + +QT Q+++
Sbjct: 388 QKKDTEIFYQFTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFY 442
Query: 532 RSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIP 591
SKDGT++PM+I+H+ G + +P + +S+ P +S+SR +F+RH G+ A+
Sbjct: 443 PSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVA 502
Query: 592 NIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA 651
NIRGGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI GGSNGGLLV
Sbjct: 503 NIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAT 562
Query: 652 CLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKV 711
C NQRP+L+G + VG +DML+F+K+TI + +++G ++K HF L+ YSPLHN+K+
Sbjct: 563 CANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKL 622
Query: 712 P-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 770
P ++ QYP+ L+LT DH+DRV PLHS KFIATLQ +G Q NPLL+ V+ AGHG
Sbjct: 623 PEADDIQYPSMLLLTADHNDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGA 682
Query: 771 GK 772
GK
Sbjct: 683 GK 684
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/722 (44%), Positives = 447/722 (61%), Gaps = 48/722 (6%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ +
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQ--------- 56
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
P G+ KE++ + +Y KYS ++ YFYF+N
Sbjct: 57 ------------CPIRGL-------------YKERMTELYDYPKYSCHFKKGKRYFYFYN 91
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G++FAY LS SGSDW
Sbjct: 92 TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWV 151
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 295
T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +DGTET+ ++ QK+Y
Sbjct: 152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211
Query: 296 YHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD----LHYFDLHS 351
YHVLGT+Q +DI EFP+ +E++D GRY+L+S +G D L Y DL
Sbjct: 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR---EGCDPVNRLWYCDLQQ 268
Query: 352 LPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWK 411
+G I+G +I + ++ + N G KT +++P +++ I+ +P E WK
Sbjct: 269 ESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK 327
Query: 412 TLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 471
L+PE E L+ VA V +N L++ Y+ +V++ + LHDL TG L FPL++G + SG
Sbjct: 328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG 387
Query: 472 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYF 531
++K E+FY FTSFL PG IYHC++ +++ +P +FRE V + + +QT Q+++
Sbjct: 388 QKKDTEIFYQFTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFY 442
Query: 532 RSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIP 591
SKDGT++PM+I+H+ G + +P + +S+ P +S+SR +F+RH G+ A+
Sbjct: 443 PSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVA 502
Query: 592 NIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA 651
NIRGGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI GGSNGGLLV
Sbjct: 503 NIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAT 562
Query: 652 CLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKV 711
C NQRP+L+G + VG +DML+F+K+TI + ++G ++K HF L+ YSPLHN+K+
Sbjct: 563 CANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTCDYGCSDSKQHFEWLIKYSPLHNVKL 622
Query: 712 P-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 770
P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ +G Q NPLL+ V+ AGHG
Sbjct: 623 PEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGA 682
Query: 771 GK 772
GK
Sbjct: 683 GK 684
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/718 (44%), Positives = 446/718 (62%), Gaps = 42/718 (5%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ +
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQ--------- 56
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
P G+ KE++ + +Y KYS ++ YFYF+N
Sbjct: 57 ------------CPIRGL-------------YKERMTELYDYPKYSCHFKKGKRYFYFYN 91
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G++FAY LS SGSDW
Sbjct: 92 TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWV 151
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 295
T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +DGTET+ ++ QK+Y
Sbjct: 152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211
Query: 296 YHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD-LHYFDLHSLPD 354
YHVLGT+Q +DI EFP+ +E++D GRY+L+S T + L Y DL +
Sbjct: 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGTDPVNRLWYCDLQQESN 271
Query: 355 GKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI 414
G I+G +I + ++ + N G KT +++P +++ I+ +P E WK L+
Sbjct: 272 G-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV 330
Query: 415 PEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRK 474
PE E L+ VA V +N L++ Y+ +V++ + LHDL TG L FPL++G + SG++K
Sbjct: 331 PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKK 390
Query: 475 YNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSK 534
E+FY FTSFL PG IYHC++ +++ +P +FRE V + + +QT Q+++ SK
Sbjct: 391 DTEIFYCFTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSK 445
Query: 535 DGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIPNIR 594
DGT++PM+I+H+ G + +P + +S+ P +S+SR +F+RH G+ A+ NIR
Sbjct: 446 DGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIR 505
Query: 595 GGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN 654
GGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI GGSNGGLLV C N
Sbjct: 506 GGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCAN 565
Query: 655 QRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVP-P 713
QRP+L+G + VG +DML+F+K+TI + +++G ++K HF L+ YSPLHN+K+P
Sbjct: 566 QRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEA 625
Query: 714 NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 771
++ QYP+ L+LT DHDDRV PLHS KFIATLQ +G Q NPLL+ V+ AGHG G
Sbjct: 626 DDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAG 683
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 634 bits (1636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/719 (44%), Positives = 444/719 (61%), Gaps = 42/719 (5%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
++ E Y P KYS ++ YFYF+N
Sbjct: 66 RMT-----ELYDCP-----------------------------KYSCHFKKGKRYFYFYN 91
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G++FAY LS SGSDW
Sbjct: 92 TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWV 151
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 295
T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +DGTET+ ++ QK+Y
Sbjct: 152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211
Query: 296 YHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD-LHYFDLHSLPD 354
YHVLGT+Q +DI EFP+ +E++D GRY+L+S T + L Y DL +
Sbjct: 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGTDPVNRLWYCDLQQESN 271
Query: 355 GKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI 414
G I+G +I + ++ + N G KT +++P +++ I+ +P E WK L+
Sbjct: 272 G-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV 330
Query: 415 PEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRK 474
PE E L+ VA V +N L++ Y+ +V++ + LHDL TG L FPL++G + SG++K
Sbjct: 331 PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKK 390
Query: 475 YNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSK 534
E+FY FTSFL PG IYHC++ +++ +P +FRE + + +QT Q+++ SK
Sbjct: 391 DTEIFYQFTSFLSPGIIYHCDLT-----KEELEPRVFREVTCKGIDASDYQTVQIFYPSK 445
Query: 535 DGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIPNIR 594
DGT++PM+I+H+ G + +P + +S+ P +S+SR +F+RH G+ A+ NIR
Sbjct: 446 DGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIR 505
Query: 595 GGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN 654
GGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI GGSNGGLLV C N
Sbjct: 506 GGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCAN 565
Query: 655 QRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVP-P 713
QRP+L+G + VG +DML+F+K+TI + +++G ++K HF L+ YSPLHN+K+P
Sbjct: 566 QRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEA 625
Query: 714 NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGK 772
++ QYP+ L+LT DHDDRV PLHS KFIATLQ +G Q NPLL+ V+ AGHG GK
Sbjct: 626 DDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGK 684
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 634 bits (1636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/722 (44%), Positives = 448/722 (62%), Gaps = 48/722 (6%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ +
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQ--------- 56
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
P G+ KE++ + +Y KYS ++ YFYF+N
Sbjct: 57 ------------CPIRGL-------------YKERMTELYDYPKYSCHFKKGKRYFYFYN 91
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G++FAY LS SGSDW
Sbjct: 92 TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWV 151
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 295
T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +DGTET+ ++ QK+Y
Sbjct: 152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211
Query: 296 YHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD----LHYFDLHS 351
YHVLGT+Q +DI EFP+ +E++D GRY+L+S +G D L Y DL
Sbjct: 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR---EGCDPVNRLWYCDLQQ 268
Query: 352 LPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWK 411
+G I+G +I + ++ + N G KT +++P +++ I+ +P E WK
Sbjct: 269 ESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK 327
Query: 412 TLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 471
L+PE E L+ VA V +N L++ Y+ +V++ + LHDL TG L FPL++G + SG
Sbjct: 328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG 387
Query: 472 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYF 531
++K E+FY FTSFL PG IYHC++ +++ +P +FRE V + + +QT Q+++
Sbjct: 388 QKKDTEIFYQFTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFY 442
Query: 532 RSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIP 591
SKDGT++PM+I+H+ G + +P + +S+ P +S+SR +F+RH G+ A+
Sbjct: 443 PSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVA 502
Query: 592 NIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA 651
NIRGGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI GG+NGGLLV
Sbjct: 503 NIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGANGGLLVAT 562
Query: 652 CLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKV 711
C NQRP+L+G + VG +DML+F+K+TI + +++G ++K HF L+ YSPLHN+K+
Sbjct: 563 CANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKL 622
Query: 712 P-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 770
P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ +G Q NPLL+ V+ AGHG
Sbjct: 623 PEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGA 682
Query: 771 GK 772
GK
Sbjct: 683 GK 684
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 633 bits (1632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/722 (44%), Positives = 447/722 (61%), Gaps = 48/722 (6%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ +
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQ--------- 56
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
P G+ KE++ + +Y KYS ++ YFYF+N
Sbjct: 57 ------------CPIRGL-------------YKERMTELYDYPKYSCHFKKGKRYFYFYN 91
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G++FAY LS SGSDW
Sbjct: 92 TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWV 151
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 295
T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +DGTET+ ++ QK+Y
Sbjct: 152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211
Query: 296 YHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD----LHYFDLHS 351
YHVLGT+Q +DI EFP+ +E++D GRY+L+S +G D L Y DL
Sbjct: 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR---EGCDPVNRLWYCDLQQ 268
Query: 352 LPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWK 411
+G I+G +I + ++ + N G KT +++P +++ I+ +P E WK
Sbjct: 269 ESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK 327
Query: 412 TLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 471
L+PE E L+ VA V +N L++ Y+ +V++ + LHDL TG L FPL++G + SG
Sbjct: 328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG 387
Query: 472 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYF 531
++K E+FY FTSFL PG IYHC++ +++ +P +FRE V + + +QT Q+++
Sbjct: 388 QKKDTEIFYQFTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFY 442
Query: 532 RSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIP 591
SKDGT++PM+I+H+ G + +P + +S+ P +S+SR +F+RH G+ A+
Sbjct: 443 PSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVA 502
Query: 592 NIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA 651
NIRGGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI GGSNGGLLV
Sbjct: 503 NIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAT 562
Query: 652 CLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKV 711
C NQRP+L+G + VG +DML+F+K+TI + +++G ++K HF L+ YSPLHN+K+
Sbjct: 563 CANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKL 622
Query: 712 P-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 770
P ++ QYP+ L+LT DH DRV PLHS KFIATLQ +G Q NPLL+ V+ AGHG
Sbjct: 623 PEADDIQYPSMLLLTADHADRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGA 682
Query: 771 GK 772
GK
Sbjct: 683 GK 684
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 632 bits (1631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/722 (44%), Positives = 447/722 (61%), Gaps = 48/722 (6%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ +
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQ--------- 56
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
P G+ KE++ + +Y KYS ++ YFYF+N
Sbjct: 57 ------------CPIRGL-------------YKERMTELYDYPKYSCHFKKGKRYFYFYN 91
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G++FAY LS SGSDW
Sbjct: 92 TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWV 151
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIY 295
T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +DGTET+ ++ QK+Y
Sbjct: 152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211
Query: 296 YHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSD----LHYFDLHS 351
YHVLGT+Q +DI EFP+ +E++D GRY+L+S +G D L Y DL
Sbjct: 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR---EGCDPVNRLWYCDLQQ 268
Query: 352 LPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWK 411
+G I+G +I + ++ + N G KT +++P +++ I+ +P E WK
Sbjct: 269 ESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK 327
Query: 412 TLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 471
L+PE E L+ VA V +N L++ Y+ +V++ + LHDL TG L FPL++G + SG
Sbjct: 328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG 387
Query: 472 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYF 531
++K E+FY FTSFL PG IYHC++ +++ +P +FRE V + + +QT Q+++
Sbjct: 388 QKKDTEIFYQFTSFLSPGIIYHCDLT-----KEELEPRVFREVTVKGIDASDYQTVQIFY 442
Query: 532 RSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIP 591
SKDGT++PM+I+H+ G + +P + +S+ P +S+SR +F+RH G+ A+
Sbjct: 443 PSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVA 502
Query: 592 NIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA 651
NIRGGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI GGSNGGLLV
Sbjct: 503 NIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAT 562
Query: 652 CLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKV 711
C NQRP+L+G + VG +DML+F+K+TI + +++G ++K HF L+ YSPLHN+K+
Sbjct: 563 CANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKL 622
Query: 712 P-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQ 770
P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ +G Q NPLL+ V+ AG G
Sbjct: 623 PEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGAGA 682
Query: 771 GK 772
GK
Sbjct: 683 GK 684
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 267/720 (37%), Positives = 385/720 (53%), Gaps = 72/720 (10%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP R+ E V D Y G + DPYRWLE ET+ + QN ++ Y
Sbjct: 12 YPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYL----------- 59
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
PY R AIKE+L NY K AP R+ +++F N
Sbjct: 60 -----------------AQIPY------RAAIKEKLAASWNYAKEGAPFREGRYHYFFKN 96
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN ++L+ Q+ EVFLDPN LS DGTTAL +FS +G+ AY LS +GSDW
Sbjct: 97 DGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWR 155
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQ-KI 294
+H+ DV++ + LK+VKF ISW ++GFFY+ Y DG+E +A Q K+
Sbjct: 156 EIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD----KPDGSELSARTDQHKV 210
Query: 295 YYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLP 353
Y+H LGT Q+ D V P + + VT+ R+LL+S +N+T G+ L+ DL
Sbjct: 211 YFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE- 269
Query: 354 DGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL 413
PL TV +D ++ N G L + T ++AP ++VT++ NP +W+ L
Sbjct: 270 ------NAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL 323
Query: 414 IPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL-DLGQITHISGR 472
IPE R + + L Y+ + + ++ D GKR+ L LG ++ +G+
Sbjct: 324 IPE---RQQVLTVHSGSGYLFAEYMVDATARVEQFDYE-GKRVREVALPGLGSVSGFNGK 379
Query: 473 RKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFR 532
+++GF ++ QP T+Y +++R + P F+P + ++Q +++
Sbjct: 380 HDDPALYFGFENYAQPPTLYRFEPKSGAI-------SLYRASAAP-FKPEDYVSEQRFYQ 431
Query: 533 SKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIPN 592
SKDGTRVP+ I +R G + NP I+ VS+ P+FS+S +L G+YA+ N
Sbjct: 432 SKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVAN 490
Query: 593 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 652
+RGGGE G+ WH AG KQN FDDF AAAEY+ + YT+ + I GGSNGGLLVGA
Sbjct: 491 LRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAV 550
Query: 653 LNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFG-SPNNKTHFHNLLSYSPLHNIKV 711
+ QRP+L AL VG LDMLR++ FT ++G S +++ F L YSPLHN++
Sbjct: 551 MTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVR- 609
Query: 712 PPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 771
YP+T+V T DH+DRV P HS+KF ATLQ +P L+R+E +AGHG G
Sbjct: 610 --PGVSYPSTMVTTADHNDRVVPAHSFKFAATLQADNAG----PHPQLIRIETNAGHGAG 663
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 267/720 (37%), Positives = 381/720 (52%), Gaps = 72/720 (10%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP R+ E V D Y G + DPYRWLE ET+ + QN ++ Y
Sbjct: 12 YPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYL----------- 59
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
PY R AIKE+L NY K AP R+ +++F N
Sbjct: 60 -----------------AQIPY------RAAIKEKLAASWNYAKEGAPFREGRYHYFFKN 96
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN ++L+ Q+ EVFLDPN LS DGTTAL +FS +G+ AY LS +GSDW
Sbjct: 97 DGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWR 155
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQ-KI 294
+H+ DV++ + LK+VKF ISW ++GFFY+ Y DG+E +A Q K+
Sbjct: 156 EIHLXDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD----KPDGSELSARTDQHKV 210
Query: 295 YYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLP 353
Y+H LGT Q+ D V P + + VT+ R+LL+S +N+T G+ L+ DL
Sbjct: 211 YFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE- 269
Query: 354 DGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL 413
PL TV +D ++ N G L + T ++AP ++VT++ NP +W+ L
Sbjct: 270 ------NAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL 323
Query: 414 IPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL-DLGQITHISGR 472
IPE R + + L Y + + ++ D GKR+ L LG ++ +G+
Sbjct: 324 IPE---RQQVLTVHSGSGYLFAEYXVDATARVEQFDYE-GKRVREVALPGLGSVSGFNGK 379
Query: 473 RKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFR 532
+++GF ++ QP T+Y +++R + P F+P + ++Q +++
Sbjct: 380 HDDPALYFGFENYAQPPTLYRFEPKSGAI-------SLYRASAAP-FKPEDYVSEQRFYQ 431
Query: 533 SKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIPN 592
SKDGTRVP+ I +R G + NP I+ VS+ P+FS+S +L G+YA+ N
Sbjct: 432 SKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVAN 490
Query: 593 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 652
+RGGGE G+ WH AG KQN FDDF AAAEY+ + YT+ + I GGSNGGLLVGA
Sbjct: 491 LRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAV 550
Query: 653 LNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFG-SPNNKTHFHNLLSYSPLHNIKV 711
QRP+L AL VG LD LR++ FT ++G S +++ F L YSPLHN++
Sbjct: 551 XTQRPDLXRVALPAVGVLDXLRYHTFTAGTGWAYDYGTSADSEAXFDYLKGYSPLHNVR- 609
Query: 712 PPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 771
YP+T V T DHDDRV P HS+KF ATLQ +P L+R+E +AGHG G
Sbjct: 610 --PGVSYPSTXVTTADHDDRVVPAHSFKFAATLQADNAG----PHPQLIRIETNAGHGAG 663
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 267/720 (37%), Positives = 382/720 (53%), Gaps = 72/720 (10%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP R+ E V D Y G + DPYRWLE ET+ + QN ++ Y
Sbjct: 12 YPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYL----------- 59
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
PY R AIKE+L NY K AP +++F N
Sbjct: 60 -----------------AQIPY------RAAIKEKLAASWNYAKEGAPFWWGRYHYFFKN 96
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN ++L+ Q+ EVFLDPN LS DGTTAL +FS +G+ AY LS +GSDW
Sbjct: 97 DGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWR 155
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQ-KI 294
+H+ DV++ + LK+VKF ISW ++GFFY+ Y DG+E +A Q K+
Sbjct: 156 EIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD----KPDGSELSARTDQHKV 210
Query: 295 YYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLP 353
Y+H LGT Q+ D V P + + VT+ R+LL+S +N+T G+ L+ DL
Sbjct: 211 YFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDQRFLLISAANSTSGNRLYVKDLSQE- 269
Query: 354 DGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL 413
PL TV +D ++ N G L + T ++AP ++VT++ NP +W+ L
Sbjct: 270 ------NAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL 323
Query: 414 IPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL-DLGQITHISGR 472
IPE R + + L Y+ + + ++ D GKR+ L LG ++ +G
Sbjct: 324 IPE---RQQVLTVHSGSGYLFAEYMVDATARVEQFDYE-GKRVREVALPGLGSVSGFNGY 379
Query: 473 RKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFR 532
+++GF ++ QP T+Y +++R + P F+P + ++Q +++
Sbjct: 380 WWDPALYFGFENYAQPPTLYRFEPKSGAI-------SLYRASAAP-FKPEDYVSEQRFYQ 431
Query: 533 SKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIPN 592
SKDGTRVP+ I +R G + NP I+ VS+ P+FS+S +L G+YA+ N
Sbjct: 432 SKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVAN 490
Query: 593 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 652
+RGGGE G+ WH AG KQN FDDF AAAEY+ + YT+ + I GGSNGGLLVGA
Sbjct: 491 LRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAV 550
Query: 653 LNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFG-SPNNKTHFHNLLSYSPLHNIKV 711
+ QRP+L AL VG LDMLR++ FT ++G S +++ F L YSPLHN++
Sbjct: 551 MTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVR- 609
Query: 712 PPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 771
YP+T+V T DHDDRV P HS+KF ATLQ +P L+R+E +AGHG G
Sbjct: 610 --PGVSYPSTMVTTADHDDRVVPAHSFKFAATLQADNAG----PHPQLIRIETNAGHGAG 663
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 267/720 (37%), Positives = 381/720 (52%), Gaps = 72/720 (10%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP R+ E V D Y G + DPYRWLE ET+ + QN ++ Y
Sbjct: 12 YPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYL----------- 59
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
PY R AIKE+L NY K AP R+ +++F N
Sbjct: 60 -----------------AQIPY------RAAIKEKLAASWNYAKEGAPFREGRYHYFFKN 96
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
GLQN ++L+ Q+ EVFLDPN LS DGTTAL +FS +G+ AY LS +GSDW
Sbjct: 97 DGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWR 155
Query: 236 TLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQ-KI 294
+H+ DV++ + LK+VKF ISW ++GFFY+ Y DG+E +A Q K+
Sbjct: 156 EIHLXDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD----KPDGSELSARTDQHKV 210
Query: 295 YYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLP 353
Y+H LGT Q+ D V P + + VT+ R+LL+S +N+T G+ L+ DL
Sbjct: 211 YFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE- 269
Query: 354 DGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL 413
PL TV +D ++ N G L + T ++AP ++VT++ NP +W+ L
Sbjct: 270 ------NAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL 323
Query: 414 IPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL-DLGQITHISGR 472
IPE R + + L Y + + ++ D GKR+ L LG ++ +G+
Sbjct: 324 IPE---RQQVLTVHSGSGYLFAEYXVDATARVEQFDYE-GKRVREVALPGLGSVSGFNGK 379
Query: 473 RKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFR 532
+++GF ++ QP T+Y +++R + P F+P + ++Q +++
Sbjct: 380 HDDPALYFGFENYAQPPTLYRFEPKSGAI-------SLYRASAAP-FKPEDYVSEQRFYQ 431
Query: 533 SKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIPN 592
SKDGTRVP+ I +R G + NP I+ VS+ P+FS+S +L G+YA+ N
Sbjct: 432 SKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVAN 490
Query: 593 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 652
+RGGGE G+ WH AG KQN FDDF AAAEY+ + YT+ + I GGSNGGLLVGA
Sbjct: 491 LRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAV 550
Query: 653 LNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFG-SPNNKTHFHNLLSYSPLHNIKV 711
QRP+L AL VG LD LR++ FT ++G S +++ F L YSPLHN++
Sbjct: 551 XTQRPDLXRVALPAVGVLDXLRYHTFTAGTGWAYDYGTSADSEAXFDYLKGYSPLHNVR- 609
Query: 712 PPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 771
YP+T V T DHDDRV P HS+KF ATLQ +P L+R+E +AGHG G
Sbjct: 610 --PGVSYPSTXVTTADHDDRVVPAHSFKFAATLQADNAG----PHPQLIRIETNAGHGAG 663
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 238/718 (33%), Positives = 371/718 (51%), Gaps = 72/718 (10%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP R ++ V D HG+++ DPYRWLE E Q + QN REA+ +
Sbjct: 3 YPATRAEQVV-DTLHGVQVADPYRWLEDEKAPEVQTWMT---------AQNAHAREALAK 52
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
REA+ + + + S P R+ +FY
Sbjct: 53 -------------------------FPGREALAARFKELFYTDSVSTPSRRNGRFFYVRT 87
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
+ +ILY ++ +G +V LDPN SKDGT +L +A S +GK A+ + +D
Sbjct: 88 HKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEA 147
Query: 236 TLHIKDVDTGK-DYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKI 294
LH+ DVD+G+ +V++ K+ + WT D KGF+Y ++ + + E + I
Sbjct: 148 VLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYY-EWLPTDPSIKVDERPGYT--TI 204
Query: 295 YYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPD 354
YH LGTE KD V E + L S+++ G+YL V +D+++
Sbjct: 205 RYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW-------- 256
Query: 355 GKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI 414
K G+ + ++ G+ +E+ A V T + AP+ +V ++ P +WK ++
Sbjct: 257 -KRPGEKDFRLLVKGVGAKYEVHAWKD-RFYVLTDEGAPRQRVFEVDPAKPARASWKEIV 314
Query: 415 PEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL-DLGQITHISGRR 473
PED + +L V+ V + L + Y+++ S + + L GK + + L +G +++ G
Sbjct: 315 PEDSSASLLSVSIVGGH-LSLEYLKDATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLE 372
Query: 474 KYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRS 533
++ +Y FTSF P IY ++ K ++ + VP P +Q +QV++ S
Sbjct: 373 DLDDAYYVFTSFTTPRQIYKTSVSTG-------KSELWAKVDVP-MNPEQYQVEQVFYAS 424
Query: 534 KDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIPNI 593
KDGT+VPM+++HR R+ P ++ V++ F S +L G+YA+ N+
Sbjct: 425 KDGTKVPMFVVHRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWL-DAGGVYAVANL 483
Query: 594 RGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACL 653
RGGGE G+ WH+AGRL KKQN FDDF AAAEY++ +KYT+PK + I GGSNGGLLVGA +
Sbjct: 484 RGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAM 543
Query: 654 NQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPP 713
QRPELYGA + V LDM+R++ F E+G+ F L +YSP H+++
Sbjct: 544 TQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPEYGTAEKPEDFKTLHAYSPYHHVR--- 600
Query: 714 NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP--LLLRVEQDAGHG 769
+ +YPA L++ DHDDRV P+H+ KF+A +Q G NP LLR+E +AGHG
Sbjct: 601 PDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPG------NPATALLRIEANAGHG 652
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 241/731 (32%), Positives = 373/731 (51%), Gaps = 71/731 (9%)
Query: 55 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIK 114
PYP + VED + G K+ DP+RWLE + ++ ++Q
Sbjct: 39 PYPASPQVPLVEDHF-GEKVSDPWRWLEADVRTDAKVAAWVQAQ---------------- 81
Query: 115 EQLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFH 174
Y+A Y + +R A+++++ + +YE++ PQR+ + FY
Sbjct: 82 ---------SAYTAA-------YLKQLPERAALEKRMKALIDYERFGLPQRRGASVFYSW 125
Query: 175 NKGLQNHSILYVQ---RNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSG 231
N GL N S L V+ + V LDPN +KDG TAL +A SD+G+ AY + G
Sbjct: 126 NSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGG 185
Query: 232 SDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTA-HM 290
SDW T+ V GK + LK VKF ++W + Y+++ + +G A +
Sbjct: 186 SDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-NDALLYSRFAEPK---EGQAFQALNY 241
Query: 291 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLH 350
Q ++ H LGT Q D PV P G + V+ GR++++++S T ++ +
Sbjct: 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD--PVNTVHVA 299
Query: 351 SLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNW 410
+ +GKI P+ +IP + + + G +L + AP K+V ++L+ + +
Sbjct: 300 RVTNGKIG---PVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPR-F 355
Query: 411 KTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPL-DLGQITHI 469
T++PE ++ V +A N+L YI + +S + DL+ GK + L +G + +
Sbjct: 356 DTVVPESKDNLESV--GIAGNRLFASYIHDAKSQVLAFDLD-GKPAGAVSLPGIGSASGL 412
Query: 470 SGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQV 529
SGR + F+SF QP T+ D K T + E + F+P F+ +QV
Sbjct: 413 SGRPGDRHAYLSFSSFTQPATVLAL-------DPATAKTTPW-EPVHLTFDPADFRVEQV 464
Query: 530 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYA 589
++ SKDGT+VPM+I+ R A P ++ V++ P FS ++ G +A
Sbjct: 465 FYPSKDGTKVPMFIVRRKDA--KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDS-GGAFA 521
Query: 590 IPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLV 649
+ N+RGGGE G+ WH+AGR KKQN FDDF AA E++I T + I GGSNGGLL+
Sbjct: 522 LANLRGGGEYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLI 581
Query: 650 GACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNI 709
GA NQRP+L+ AA VG +DMLRF++FT Y ++G P + + L YSP HN+
Sbjct: 582 GAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNV 641
Query: 710 KVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ-EKIGSLPYQKNPLLLRVEQDAGH 768
+ + YPA LV T D DDRV P HS+K+ A LQ IG P+ L+R+E AGH
Sbjct: 642 R---SGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPH-----LIRIETRAGH 693
Query: 769 GQGKALDIELK 779
G GK +D +++
Sbjct: 694 GSGKPIDKQIE 704
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 9/242 (3%)
Query: 533 SKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIPN 592
S DG ++P +++++ G + +NP ++ V P FS + G+ + N
Sbjct: 456 SFDGVKIPYFLVYKKGIKFDGKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLAN 515
Query: 593 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 652
IRGGGE G +WH + + +K+Q F+DF A +E +I + T P+Y+ I GGSNGGLLV
Sbjct: 516 IRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVA 575
Query: 653 LNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVP 712
+ QRPEL+GA V LDM+R+ +F + +E+G P ++ Y+PL N+ +
Sbjct: 576 MTQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSL- 634
Query: 713 PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGK 772
+YP L+ D RV P H F L + + Y +D+GHG G
Sbjct: 635 --TQKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNPNTKTY------FLESKDSGHGSGS 686
Query: 773 AL 774
L
Sbjct: 687 DL 688
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 143/603 (23%), Positives = 262/603 (43%), Gaps = 57/603 (9%)
Query: 191 TGSTEVFLDPNKLS--KDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDV-DTGKD 247
+ EV +D N+++ K +++ A+ + SG++ T+ K + D +
Sbjct: 155 VAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT 214
Query: 248 YPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDI 307
+ + I W DH FY T+ K++ HV+G Q +D+
Sbjct: 215 IADKVSGTN-GEIVWGPDHTSLFYV-----------TKDETLRENKVWRHVMGKLQSEDV 262
Query: 308 PVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 367
+ E N + D + S S T +++H DL K + L+ V
Sbjct: 263 CLYEEHNPLFSAFMYKAADTNTLCIGSQSPET--AEVHLLDLR-----KGNAHNTLEIVR 315
Query: 368 PGMDH-HHEIIANNGPELIVKTTKN-APKGKVVTINLNNPCEKNWKTLIPEDENRTLDVV 425
P +++ + L++ T + A K++ P +W ++ +
Sbjct: 316 PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP--SDWSHVLVDHSEDVFMES 373
Query: 426 AAVANNKLIVHY----IQNVRSVM-DLHD--LNTGKRLHSFPLDLGQIT-HI--SGRRKY 475
AV +N L+V + + ++M D D G L ++ T H+ S +Y
Sbjct: 374 IAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEY 433
Query: 476 NEVFYG--FTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRS 533
E + ++S P T + +++ QD + + + F+ ++ ++ + +
Sbjct: 434 EEPTFRMEYSSLATPNTWF------DVSPQDHSRTAVKVREVGGGFDAANYKVERRFATA 487
Query: 534 KDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIPNI 593
D T++P+ +++ ++ P ++ +S+ P FSI + I+AI +I
Sbjct: 488 PDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDR-GMIFAIAHI 546
Query: 594 RGGGELGEDWHNAG-RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 652
RGG ELG W+ G + L K+N F DF AAAE+++N K T P + G S GGLL+GA
Sbjct: 547 RGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAV 606
Query: 653 LNQRPELYGAALILVGALDMLRFN---KFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNI 709
LN RP+L+ AL V +D++ + E+G+PN ++ +LSYSP+ N+
Sbjct: 607 LNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNV 666
Query: 710 KVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 769
+ +YP +V G HD RV K+++ L+E N +LL ++ ++GH
Sbjct: 667 RA----QEYPNIMVQCGLHDPRVAYWEPAKWVSKLRE----CKTDNNEILLNIDMESGHF 718
Query: 770 QGK 772
K
Sbjct: 719 SAK 721
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 18/184 (9%)
Query: 494 CNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRN 552
+ P I +P + E +PE ++ ++ V+ S DG+RVP Y++ A
Sbjct: 282 LSTPPRIVSLPSGEPLL--EGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTP 339
Query: 553 RRNPVIIXXXXXXXVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL-L 610
V++ S TF+ S H +PN RG GE+W RL +
Sbjct: 340 GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHV----VMPNYRGSTGYGEEW----RLKI 391
Query: 611 KKQNC---FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 667
C +D AAA + Y IMG S GG + L +P L+ A +
Sbjct: 392 IGDPCGGELEDVSAAARWARESGLASELY--IMGYSYGGYMTLCALTMKPGLFKAGVAGA 449
Query: 668 GALD 671
+D
Sbjct: 450 SVVD 453
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 18/184 (9%)
Query: 494 CNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRN 552
+ P I +P + E +PE ++ ++ V+ S DG+RVP Y++ A
Sbjct: 302 LSTPPRIVSLPSGEPLL--EGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTP 359
Query: 553 RRNPVIIXXXXXXXVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL-L 610
V++ S TF+ S H +PN RG GE+W RL +
Sbjct: 360 GPTVVLVAGGPFAEDSDSWDTFAASLAAAGFHV----VMPNYRGSTGYGEEW----RLKI 411
Query: 611 KKQNC---FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 667
C +D AAA + Y IMG S GG + L +P L+ A +
Sbjct: 412 IGDPCGGELEDVSAAARWARESGLASELY--IMGYSYGGYMTLCALTMKPGLFKAGVAGA 469
Query: 668 GALD 671
+D
Sbjct: 470 SVVD 473
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 18/184 (9%)
Query: 494 CNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRN 552
+ P I +P + E +PE ++ ++ V+ S DG+RVP Y++ A
Sbjct: 302 LSTPPRIVSLPSGEPLL--EGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTP 359
Query: 553 RRNPVIIXXXXXXXVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL-L 610
V++ S TF+ S H +PN RG GE+W RL +
Sbjct: 360 GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHV----VMPNYRGSTGYGEEW----RLKI 411
Query: 611 KKQNC---FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 667
C +D AAA + Y IMG S GG + L +P L+ A +
Sbjct: 412 IGDPCGGELEDVSAAARWARESGLASELY--IMGYSYGGYMTLCALTMKPGLFKAGVAGA 469
Query: 668 GALD 671
+D
Sbjct: 470 SVVD 473
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 18/184 (9%)
Query: 494 CNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRN 552
+ P I +P + E +PE ++ ++ V+ S DG+RVP Y++ A
Sbjct: 302 LSTPPRIVSLPSGEPLL--EGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTP 359
Query: 553 RRNPVIIXXXXXXXVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL-L 610
V++ S TF+ S H +PN RG GE+W RL +
Sbjct: 360 GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHV----VMPNYRGSTGYGEEW----RLKI 411
Query: 611 KKQNC---FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 667
C +D AAA + Y IMG S GG + L +P L+ A +
Sbjct: 412 IGDPCGGELEDVSAAARWARESGLASELY--IMGYSYGGYMTLCALTMKPGLFKAGVAGA 469
Query: 668 GALD 671
+D
Sbjct: 470 SVVD 473
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 18/184 (9%)
Query: 494 CNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRN 552
+ P I +P + E +PE ++ ++ V+ S DG+RVP Y++ A
Sbjct: 302 LSTPPRIVSLPSGEPLL--EGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTP 359
Query: 553 RRNPVIIXXXXXXXVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL-L 610
V++ S TF+ S H +PN RG GE+W RL +
Sbjct: 360 GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHV----VMPNYRGSTGYGEEW----RLKI 411
Query: 611 KKQNC---FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 667
C +D AAA + Y IMG S GG + L +P L+ A +
Sbjct: 412 IGDPCGGELEDVSAAARWARESGLASELY--IMGYSYGGYMTLCALTMKPGLFKAGVAGA 469
Query: 668 GALD 671
+D
Sbjct: 470 SVVD 473
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 18/184 (9%)
Query: 494 CNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRN 552
+ P I +P + E +PE ++ ++ V+ S DG+RVP Y++ A
Sbjct: 302 LSTPPRIVSLPSGEPLL--EGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTP 359
Query: 553 RRNPVIIXXXXXXXVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL-L 610
V++ S TF+ S H +PN RG GE+W RL +
Sbjct: 360 GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHV----VMPNYRGSTGYGEEW----RLKI 411
Query: 611 KKQNC---FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 667
C +D AAA + Y IMG + GG + L +P L+ A +
Sbjct: 412 IGDPCGGELEDVSAAARWARESGLASELY--IMGYAYGGYMTLCALTMKPGLFKAGVAGA 469
Query: 668 GALD 671
+D
Sbjct: 470 SVVD 473
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 15/79 (18%)
Query: 196 VFLDPNKLSKDGTTALKLYAFSDN--GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 253
VF D N++S DG T L AF+++ ++ AY W TL ++DV+ + + +K
Sbjct: 184 VFWDDNRISIDGPTDL---AFTEDVLARYRAYG-------WQTLRVEDVNDLEALRKAIK 233
Query: 254 NVKF---PSISWTHDHKGF 269
K P++ H GF
Sbjct: 234 LAKLDERPTLIAVRSHIGF 252
>pdb|2WIL|A Chain A, Aged Form Of Human Butyrylcholinesterase Inhibited By
Tabun Analogue Ta5
pdb|2WIL|B Chain B, Aged Form Of Human Butyrylcholinesterase Inhibited By
Tabun Analogue Ta5
Length = 529
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 84 PHCAETQIFNFMQNNISNPYCQNHSDREAIKEQLLRMANYEKYSAPHFGVSNPYCQNHTD 143
P T+ F+ NN Y ++ S + E + M YE FG+ N+T
Sbjct: 401 PALEFTKKFSEWGNNAFFYYFEHRSSKLPWPEWMGVMHGYEIEFV--FGLPLERRDNYTK 458
Query: 144 REAIKEQLL--RMANYEKYSAPQRQENN 169
E I + + R AN+ KY PQ +NN
Sbjct: 459 AEEILSRSIVKRWANFAKYGNPQETQNN 486
>pdb|1OF1|A Chain A, Kinetics And Crystal Structure Of The Herpes Simplex Virus
Type 1 Thymidine Kinase Interacting With
(South)-Methanocarba-Thymidine
pdb|1OF1|B Chain B, Kinetics And Crystal Structure Of The Herpes Simplex Virus
Type 1 Thymidine Kinase Interacting With
(South)-Methanocarba-Thymidine
Length = 376
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 745 QEKIGSLPYQKNPLLLRVEQDAGHGQGKALDIEL 778
QE P QK P LLRV D HG GK +L
Sbjct: 35 QEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQL 68
>pdb|1QHI|A Chain A, Herpes Simplex Virus Type-i Thymidine Kinase Complexed
With A Novel Non-substrate Inhibitor,
9-(4-hydroxybutyl)-n2- Phenylguanine
pdb|1QHI|B Chain B, Herpes Simplex Virus Type-i Thymidine Kinase Complexed
With A Novel Non-substrate Inhibitor,
9-(4-hydroxybutyl)-n2- Phenylguanine
Length = 366
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 745 QEKIGSLPYQKNPLLLRVEQDAGHGQGKALDIEL 778
QE P QK P LLRV D HG GK +L
Sbjct: 25 QEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQL 58
>pdb|1KIM|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Deoxythymidine
pdb|1KIM|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Deoxythymidine
pdb|2KI5|A Chain A, Herpes Simplex Type-1 Thymidine Kinase In Complex With The
Drug Aciclovir At 1.9a Resolution
pdb|2KI5|B Chain B, Herpes Simplex Type-1 Thymidine Kinase In Complex With The
Drug Aciclovir At 1.9a Resolution
Length = 366
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 745 QEKIGSLPYQKNPLLLRVEQDAGHGQGKALDIEL 778
QE P QK P LLRV D HG GK +L
Sbjct: 25 QEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQL 58
>pdb|1P7C|A Chain A, Crystal Structure Of Hsv1-Tk Complexed With Tp5a
pdb|1P7C|B Chain B, Crystal Structure Of Hsv1-Tk Complexed With Tp5a
pdb|1VTK|A Chain A, Thymidine Kinase From Herpes Simplex Virus Type 1 In
Complex With Adp And Deoxythymidine-monophosphate
pdb|2VTK|A Chain A, Thymidine Kinase From Herpes Simplex Virus Type 1 In
Complex With Adp And Deoxythymidine
pdb|3VTK|A Chain A, Thymidine Kinase From Herpes Simplex Virus Type 1 In
Complex With Adp And 5-Iodo-Deoxyuridine-Monophosphate
Length = 343
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 745 QEKIGSLPYQKNPLLLRVEQDAGHGQGKALDIEL 778
QE P QK P LLRV D HG GK +L
Sbjct: 2 QEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQL 35
>pdb|2X06|A Chain A, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|B Chain B, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|C Chain C, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|D Chain D, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|E Chain E, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|F Chain F, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|G Chain G, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|H Chain H, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
Length = 344
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 344 LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLN 403
L +++ PD KI + P VI G +++ EL +K KN G V T N N
Sbjct: 56 LKLGNINPKPDIKIVKESPATAVIDGDLGLGQVVGKKAXELAIKKAKNVGVGVVATRNAN 115
>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 1096
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 126 YSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFH 174
+S H G+SN +++ RE KEQL + + S QE ++ + H
Sbjct: 534 FSYSHTGLSNRLARDNELRENDKEQLRALCTRDPLSEITEQEKDFLWSH 582
>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 1096
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 126 YSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFH 174
+S H G+SN +++ RE KEQL ++ + S QE ++ + H
Sbjct: 534 FSYSHAGLSNRLARDNELRENDKEQLKAISTRDPLSEITEQEKDFLWSH 582
>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex
Length = 1096
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 126 YSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFH 174
+S H G+SN +++ RE KEQL ++ + S QE ++ + H
Sbjct: 534 FSYSHAGLSNRLARDNELRENDKEQLKAISTRDPLSEITEQEKDFLWSH 582
>pdb|3ZIM|A Chain A, Discovery Of A Potent And Isoform-selective Targeted
Covalent Inhibitor Of The Lipid Kinase Pi3kalpha
Length = 940
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 126 YSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFH 174
+S H G+SN +++ RE KEQL ++ + S QE ++ + H
Sbjct: 400 FSYSHAGLSNRLARDNELRENDKEQLKAISTRDPLSEITEQEKDFLWSH 448
>pdb|3HHM|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
Length = 1091
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 126 YSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFH 174
+S H G+SN +++ RE KEQL ++ + S QE ++ + H
Sbjct: 529 FSYSHAGLSNRLARDNELRENDKEQLKAISTRDPLSEITEQEKDFLWSH 577
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,228,932
Number of Sequences: 62578
Number of extensions: 1203135
Number of successful extensions: 2720
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2556
Number of HSP's gapped (non-prelim): 67
length of query: 783
length of database: 14,973,337
effective HSP length: 106
effective length of query: 677
effective length of database: 8,340,069
effective search space: 5646226713
effective search space used: 5646226713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)