RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2521
(783 letters)
>gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A
[Amino acid transport and metabolism].
Length = 648
Score = 399 bits (1027), Expect = e-129
Identities = 222/708 (31%), Positives = 329/708 (46%), Gaps = 95/708 (13%)
Query: 76 DPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKEQLLRMANYEKYSAPHFGVSN 135
DPYRWLE AE + QN + + S R A ++LL
Sbjct: 4 DPYRWLEDLDSAEALKWVEAQNAKTREFLGEDSARAASDKRLL----------------- 46
Query: 136 PYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN-----KGLQNHSILYVQRNL 190
+L +YE P + Y+ F +GL + L R+
Sbjct: 47 --------------ELW---DYEDIPIPFERGGRYYNFWQDALYPRGLYRRTTLETYRSA 89
Query: 191 TGSTEVFLDPNKLSKDG--TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY 248
EV +D + LS D AL + +G Y LS GSD D++TG+
Sbjct: 90 KPEWEVLIDVDALSADLGDKVALGGASVLPDGTRLLYSLSIGGSDAGITREFDLETGEFV 149
Query: 249 PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG---QKIYYHVLGTEQDK 305
E + KFP ISW D G F ++Y +T + +++ L Q+
Sbjct: 150 EE--EGFKFPGISWL-DDDGVFVSRY-----WRPKEKTPSGYPRVVKRLKRGKLFEGQEG 201
Query: 306 DIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKT 365
D+ V + G +++ G + ++S T G L L PD K+ ++
Sbjct: 202 DVMVNARGDQDPWGFRLVLSEDGDFFMLSLWLGTSGKGLIKLGL---PD-KVGYEW--GK 255
Query: 366 VIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVV 425
++ + + L + T ++ GKV+ IPE E ++L+ V
Sbjct: 256 LVNTLRADWTFADVDYGLLYLLTDEDLELGKVIAE------------FIPE-EEQSLEQV 302
Query: 426 AAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTS 484
+KL+ + NV ++++DL G+R+ L G + S + +EVF FTS
Sbjct: 303 VTT-KDKLVAGTLDNVSGRLEVYDLK-GERIEEVELPPPGALGMGSADKDGDEVFLAFTS 360
Query: 485 FLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYII 544
F P T+Y D + + RE V +F+ ++ +Q + SKDGTR+P +I+
Sbjct: 361 FTTPSTLYR-------LDLFGGELEVIREQPV-QFDADNYEVEQFFATSKDGTRIPYFIV 412
Query: 545 HRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 604
+ GA ++ NP ++Y YGG+ +S+ P FS SR ++L G++ + NIRGGGE G +WH
Sbjct: 413 RK-GAKKDE-NPTLLYAYGGFNISLTPRFSGSRKLWLER-GGVFVLANIRGGGEFGPEWH 469
Query: 605 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAAL 664
AG KQN FDDF A AE +I + T P+ + I GGSNGGLLVGA L QRPEL+GAA+
Sbjct: 470 QAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAV 529
Query: 665 ILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVL 724
V LDMLR++ T +E+G+P++ LL+YSP HN+K +YP TL+
Sbjct: 530 CEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLK---PGQKYPPTLIT 586
Query: 725 TGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGK 772
T HDDRV P H+ KF A LQE P+LLR E GHG
Sbjct: 587 TSLHDDRVHPAHARKFAAKLQE-------VGAPVLLREETKGGHGGAA 627
>gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal
beta-propeller domain. This unusual 7-stranded
beta-propeller domain protects the catalytic triad of
prolyl oligopeptidase (see pfam00326), excluding larger
peptides and proteins from proteolysis in the cytosol.
Length = 412
Score = 343 bits (881), Expect = e-111
Identities = 156/446 (34%), Positives = 233/446 (52%), Gaps = 53/446 (11%)
Query: 57 PKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKEQ 116
P R+DETV D+YHG + DPYRWLE E + +N + +
Sbjct: 1 PPTRRDETVVDEYHGDVVSDPYRWLEDDDSPEVLAWVEAENKYTEDF------------- 47
Query: 117 LLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHNK 176
+A + RE IKE+L + NY+ SAP R+ Y+YF N
Sbjct: 48 ---LAQLKPL-----------------REKIKEELTALINYDDISAPFRKGGYYYYFRNT 87
Query: 177 GLQNHSILYVQRNLTG---STEVFLDPNKLSKDG--TTALKLYAFSDNGKHFAYCLSKSG 231
G +N S+LY + G + EVFLDPN LS+DG T AL YAFS +G+ AY LS SG
Sbjct: 88 GGKNQSVLYRRDAGEGPGETEEVFLDPNTLSEDGDFTVALDGYAFSPDGRLLAYSLSLSG 147
Query: 232 SDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMG 291
SDW T+ +DV+TG+ P+VL+ VKF I W D+KGFFY++Y + + ++
Sbjct: 148 SDWYTIRFRDVETGEPLPDVLEGVKFSGIVWAPDNKGFFYSRY------DEPERGSTNLN 201
Query: 292 QKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHS 351
QK++ H LGT Q +D+ V E P+ L +E +D G+YL +S+++ T ++L+ DL
Sbjct: 202 QKVWRHRLGTPQSQDVLVFEEPDEPFWYLGAERSDDGKYLFISSASGTDVNELYVLDLAQ 261
Query: 352 LPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWK 411
D PL+ V+P D + + + G T AP ++V ++LN+P +WK
Sbjct: 262 EKD------GPLRKVVPRFDGVYYYVEHEGDTFYFLTNDGAPNFRLVRVDLNDPSPADWK 315
Query: 412 TLIPE-DENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRL-HSFPLDLGQITHI 469
+I E E+ L+ + V N L++ Y ++ S + + DL G L F +G ++
Sbjct: 316 DVIVEHREDVLLEEI-TVFGNYLVLSYRRDALSRLQVFDLGGGGVLFEEFLPGVGSVSSA 374
Query: 470 SGRRKYNEVFYGFTSFLQPGTIYHCN 495
SG +E+ Y F+SFL PGTIY +
Sbjct: 375 SGEYDDDELRYSFSSFLTPGTIYDLD 400
>gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism].
Length = 682
Score = 315 bits (809), Expect = 7e-97
Identities = 195/734 (26%), Positives = 332/734 (45%), Gaps = 100/734 (13%)
Query: 55 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDRE-AI 113
P P + K +HG D Y WL +N SNP + + E A
Sbjct: 4 PLPPIAKKVPTTRTHHGDTRVDDYAWL-------------RDDNWSNPEVLAYLEAENAY 50
Query: 114 KEQLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANY---EKYSAPQRQENNY 170
E ++ + +++++ E + ++ Y
Sbjct: 51 TEAVM-----------------------AHLQPLQKKIFEEIKGRIKEDDLSVPYRKGPY 87
Query: 171 FYFH--NKGLQNHSILYVQRNLTGSTE-VFLDPNKLSKDGT-TALKLYAFSDNGKHFAYC 226
Y+ +G + + I Q + G E V LD NK ++ +L + S + AY
Sbjct: 88 EYYSRTEEGKE-YPIYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYS 146
Query: 227 LSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTET 286
+ G + TL KD+ TG++ P+ + N S +W D K FY
Sbjct: 147 VDVLGDEQYTLRFKDLATGEELPDEITNT-SGSFAWAADGKTLFY-----------TRLD 194
Query: 287 TAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHY 346
H K++ H LGT D V E + R L + Y+++S + S++
Sbjct: 195 ENHRPDKVWRHRLGTPGSSDELVYEEKDDRFF-LSVGRSRSEAYIVIS-LGSHITSEVRL 252
Query: 347 FDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPC 406
D P+ + K V+P + + + G + + + K+V + +
Sbjct: 253 LDA-DDPEAE------PKVVLPRENGVEYSVEHGGDRFYILSNADGKNFKLVRAPV-SAD 304
Query: 407 EKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGK-RLHSFPLDLGQ 465
+ NW+ LIP E+ L+ V A++ L++ Q + + D TG+ R +F D
Sbjct: 305 KSNWRELIPHREDVRLEGVDLFADH-LVLLERQEGLPRVVVRDRKTGEERGIAFD-DEAY 362
Query: 466 ITHISGRRKYNE--VFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVP-EFEPT 522
+SG +++ + Y ++S P T++ ++ + T+ ++ VP F+P
Sbjct: 363 SAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATG-------ERTLLKQQEVPGGFDPE 415
Query: 523 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFL- 581
+ +++++ + DG +VP+ +++R + P+++YGYG YG+S+ P+FSI+R L
Sbjct: 416 DYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFSIARLSLLD 475
Query: 582 RHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMG 641
R F +YAI ++RGGGELG W+ G+LL K+N F DF AAA +++ + YT P I +G
Sbjct: 476 RGF--VYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIG 533
Query: 642 GSNGGLLVGACLNQRPELYGAALILVGALD----MLRFN-KFTIAYYSESEFGSPNNKTH 696
GS GG+L+GA N P+L+ + V +D ML + T+ + E+G+P + +
Sbjct: 534 GSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEW--DEWGNPLDPEY 591
Query: 697 FHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQE-KIGSLPYQK 755
+ + SYSP N++ P YPA LV TG +D RV K++A L+E K
Sbjct: 592 YDYIKSYSPYDNVEAQP----YPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDG----- 642
Query: 756 NPLLLRVEQDAGHG 769
NPLLL+ DAGHG
Sbjct: 643 NPLLLKTNMDAGHG 656
>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.
Length = 212
Score = 202 bits (515), Expect = 4e-60
Identities = 80/196 (40%), Positives = 106/196 (54%), Gaps = 15/196 (7%)
Query: 580 FLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITI 639
L + A+ N RG G G WH+AG+ QN FDDF AAAEY+I + Y P + I
Sbjct: 9 LLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGYVDPDRLAI 68
Query: 640 MGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE-SEFGSP-NNKTHF 697
GGS GG L GA LNQRP+L+ AA+ +V +D L + T + E+G+P +N+ +
Sbjct: 69 WGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTSPFTERYMEWGNPWDNEEGY 128
Query: 698 HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP 757
L YSP N+K YP L++ G HDDRVPP + K +A LQ K
Sbjct: 129 RYLSPYSPYDNVK------AYPPLLLIHGLHDDRVPPAEALKLVAALQAK-------GKN 175
Query: 758 LLLRVEQDAGHGQGKA 773
+LL + D GHG GK
Sbjct: 176 VLLLIFPDEGHGGGKP 191
>gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional.
Length = 686
Score = 193 bits (491), Expect = 3e-52
Identities = 152/551 (27%), Positives = 261/551 (47%), Gaps = 63/551 (11%)
Query: 237 LHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYY 296
+ ++++TG YPE+L NV+ PS W +D F+Y + + +++
Sbjct: 155 IRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVR----------KHPVTLLPYQVWR 203
Query: 297 HVLGTEQDKDIPVVEFPNGR-SLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDG 355
H +GT +D V E + + LH T Y+++ ++ T L L D
Sbjct: 204 HTIGTPASQDELVYEEKDDTFYVSLHK--TTSKHYVVIHLASATTSEVL-------LLDA 254
Query: 356 KISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP 415
+++ P +P H + + +++ ++ + + + E+ W+ LIP
Sbjct: 255 ELADAEPF-VFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRD--EQQWEELIP 311
Query: 416 EDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLH---SFPLDLGQITHISGR 472
EN L+ + L+V Q R + L +N R +F D +T I+
Sbjct: 312 PRENIMLEGFTLFTD-WLVVEERQ--RGLTSLRQINRKTREVIGIAFD-DPAYVTWIA-- 365
Query: 473 RKYN------EVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQT 526
YN + YG++S P T++ D D + + ++T VP F+ +++
Sbjct: 366 --YNPEPETSRLRYGYSSMTTPDTLFE-------LDMDTGERRVLKQTEVPGFDAANYRS 416
Query: 527 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFL-RHFN 585
+ ++ ++DG VP+ +++ R NP+++YGYG YG S+ FS SR L R F
Sbjct: 417 EHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGF- 475
Query: 586 GIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNG 645
+YAI ++RGGGELG+ W+ G+ LKK+N F+D+ A + ++ Y P MGGS G
Sbjct: 476 -VYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAG 534
Query: 646 GLLVGACLNQRPELYGAALILVGALDMLRF---NKFTIAYYSESEFGSPNNKTHFHNLLS 702
G+L+G +NQRPEL+ + V +D++ + E+G+P + ++ + S
Sbjct: 535 GMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKS 594
Query: 703 YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRV 762
YSP N+ YP LV TG HD +V K++A L+E L + LLL
Sbjct: 595 YSPYDNVTA----QAYPHLLVTTGLHDSQVQYWEPAKWVAKLRE----LKTDDHLLLLCT 646
Query: 763 EQDAGHGQGKA 773
+ D+GHG GK+
Sbjct: 647 DMDSGHG-GKS 656
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 103 bits (259), Expect = 6e-23
Identities = 100/569 (17%), Positives = 182/569 (31%), Gaps = 92/569 (16%)
Query: 216 FSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYC 275
+S +G A+ + G + VD G + V S
Sbjct: 67 WSPDGSVLAFVSTDGGRVA---QLYLVDVGGLITKTAFGVSDARWSP------------- 110
Query: 276 DINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVST 335
D + A T A + + +PV G V D L+
Sbjct: 111 DGDRIAFLTAEGASKRDGGDHLFV-----DRLPVWFDGRG-GERSDLYVVDIESKLIKLG 164
Query: 336 SNNTQGSDLHYFDLHSLPDGKIS-GKFPLKTVIPGMDHHHEIIANNGPELIVKTTKN--- 391
N + DG++ P + + + +I NG + T
Sbjct: 165 LGNLD-----VVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESL-TPGEGSI 218
Query: 392 -----APKGKVVTINLNNPCEKNW----KTLIPEDENRTLDVVAAVANNKLIVHYIQNVR 442
GK + + L ++ L+ + E +D + ++ ++
Sbjct: 219 SKLAFDADGKSIAL-LGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGL 277
Query: 443 SVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFL--------------QP 488
L + T S + + G + G F +P
Sbjct: 278 DGDGLLFIATDGGGSSPLFRVDDLGG--GVEGLSGDDGGVPGFDVDGRKLALAYSSPTEP 335
Query: 489 GTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVG 548
IY ++ K T + + + L + + V ++S DG + ++ G
Sbjct: 336 PEIYL------YDRGEEAKLTSSNNSGLKKV--KLAEPEPVTYKSNDGETIHGWLYKPPG 387
Query: 549 ALRNRRNPVIIYGYGG----YGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWH 604
++ P+I+Y +GG G S P + + + + PN RG G ++
Sbjct: 388 FDPRKKYPLIVYIHGGPSAQVGYSFNPEIQV---LASAGYAVLA--PNYRGSTGYGREFA 442
Query: 605 NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAAL 664
+A R +D AA + ++ P+ I I GGS GG + + P A
Sbjct: 443 DAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVA 502
Query: 665 ILVGALDMLRFNKFTIAY---YSESEFGSPNNKTHFHNLLSYSPL---HNIKVPPNNTQY 718
+ G +L F + T E+ G P ++ + SP+ NIK P
Sbjct: 503 VAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKY---EDRSPIFYADNIKTP------ 553
Query: 719 PATLVLTGDHDDRVPPLHSYKFIATLQEK 747
L++ G+ DDRVP + + + L+ K
Sbjct: 554 --LLLIHGEEDDRVPIEQAEQLVDALKRK 580
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 37.4 bits (87), Expect = 0.014
Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 19/128 (14%)
Query: 617 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN 676
D A + + + ++G S GG + A +RPE A L+L+ LR
Sbjct: 53 ADLAALLDALGLGP------VVLVGHSLGGAVALAAAARRPERV-AGLVLISP--PLRDL 103
Query: 677 KFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH 736
+ +A + + +L L + VP LV+ G+ D VPP
Sbjct: 104 EELLAADAAALLALLRAALLDADLREA--LARLTVP--------VLVIHGEDDPLVPPEA 153
Query: 737 SYKFIATL 744
+ + L
Sbjct: 154 ARRLAEAL 161
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 36.8 bits (85), Expect = 0.032
Identities = 47/220 (21%), Positives = 72/220 (32%), Gaps = 48/220 (21%)
Query: 535 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAI-PNI 593
G VP+ + R PV++Y +GG V + L G + +
Sbjct: 60 SGDGVPVRVY-RPDRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDY 118
Query: 594 RGGGELG-----EDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLL 648
R E ED + A R L+ AAE I+ P I + G S GG L
Sbjct: 119 RLAPEHPFPAALEDAYAAYRWLRAN--------AAELGID-----PSRIAVAGDSAGGHL 165
Query: 649 VG-----ACLNQRPELYGAALI--------------LVGALDMLRFNKFTIAYYSESEFG 689
A P LI G D+L A++++ G
Sbjct: 166 ALALALAARDRGLPLPAAQVLISPLLDLTSSAASLPGYGEADLLDAAAIL-AWFADLYLG 224
Query: 690 SPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHD 729
+ ++ SPL + + + P TL+ T + D
Sbjct: 225 AAPDREDPE----ASPLAS----DDLSGLPPTLIQTAEFD 256
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 34.7 bits (80), Expect = 0.15
Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 27/160 (16%)
Query: 521 PTLFQTKQVYFRSKDGTRVPMYI----IHRVGALRNRRNPVIIYGYGGYGVSVLPTFSIS 576
P + YF DGTR+ G + V+++G G + +
Sbjct: 4 PVPRTRTEGYFTGADGTRLRYRTWAAPEPPKGVV------VLVHGLGEH------SGRYE 51
Query: 577 RCMFLRHFNGI--YAIPNIRGGG--ELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 632
G YA+ ++RG G G+ H + + DD A E I +
Sbjct: 52 ELADDLAARGFDVYAL-DLRGHGRSPRGQRGH----VDSFADYVDDLDAFVET-IAEPDP 105
Query: 633 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDM 672
++G S GGL+ L + P ++ AL +
Sbjct: 106 GLPVF-LLGHSMGGLIALLYLARYPPRIDGLVLSSPALGL 144
>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 33.8 bits (78), Expect = 0.22
Identities = 34/211 (16%), Positives = 62/211 (29%), Gaps = 53/211 (25%)
Query: 544 IHRVGALRNRRNPVII--YGYGGYGVSVLP--TFSISRCMFLRHFNGIYAIPNIRGG--- 596
I R+ + P++I +G GG + ++P + + G A
Sbjct: 7 IPRIEKPGDPAAPLLILLHGLGGDELDLVPLPELILPNATLV-SPRGPVAENGGPRFFRR 65
Query: 597 GELGEDWHNAGRLLKKQNCFDDF--QAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN 654
+ G + L + +F + A EY I+ I ++G S G + +
Sbjct: 66 YDEGS--FDQEDLDLETEKLAEFLEELAEEYGID-----SSRIILIGFSQGANIALSLGL 118
Query: 655 QRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPN 714
P L+ A++ G L ++ P+
Sbjct: 119 TLPGLFAGAILFSGML-----------------------------------PLEPELLPD 143
Query: 715 NTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 745
P L+ G D VP + L
Sbjct: 144 LAGTP-ILLSHGTEDPVVPLALAEALAEYLT 173
>gnl|CDD|226040 COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 312
Score = 34.0 bits (78), Expect = 0.27
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 617 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 668
+A ++N+ P + + G SNGG + + P+++ A + G
Sbjct: 126 GFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAG 177
>gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 236
Score = 33.5 bits (77), Expect = 0.33
Identities = 32/155 (20%), Positives = 48/155 (30%), Gaps = 48/155 (30%)
Query: 617 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN 676
D AA +Y+ + PK I ++G GG L + PE+ A
Sbjct: 94 ADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEVKAAV------------- 140
Query: 677 KFTIAYYSESEFGSPNNKTHFHNLLSYSPLH--NIKVPPNNTQYPATLVLTGDHDDRVPP 734
A+Y G L++ IKVP L+ D +P
Sbjct: 141 ----AFY-----GG---------LIADDTADAPKIKVP--------VLLHLAGEDPYIPA 174
Query: 735 LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 769
A L++ + L + AGHG
Sbjct: 175 ADVDALAAALEDAG--VKVD-----LEIYPGAGHG 202
>gnl|CDD|225989 COG3458, COG3458, Acetyl esterase (deacetylase) [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 321
Score = 32.4 bits (74), Expect = 0.93
Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 34/168 (20%)
Query: 517 PEFEPTLFQTKQV-----YFRSKDGTRVPMYIIHRVGALRNRRNPVII--YGYGGYGVSV 569
P E + F +V F G R+ +++ + + P ++ +GYGG G
Sbjct: 42 PVLERSDFTLPRVEVYDVTFTGYGGARIKGWLV--LPRHEKGKLPAVVQFHGYGGRGGEW 99
Query: 570 LPTFSISRCMFLRHFNGIYAIPNIRGGGELGED------------WHNAGRLLKKQN--- 614
+ + + ++RG G +D + G L +K
Sbjct: 100 HDMLHWAVAGY------AVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYY 153
Query: 615 --CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC--LNQRPE 658
F D A E + + + I + GGS GG L A L+ R +
Sbjct: 154 RGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIK 201
>gnl|CDD|226375 COG3857, AddB, ATP-dependent nuclease, subunit B [DNA replication,
recombination, and repair].
Length = 1108
Score = 32.8 bits (75), Expect = 1.0
Identities = 25/141 (17%), Positives = 36/141 (25%), Gaps = 23/141 (16%)
Query: 549 ALRNRRNPVIIYGY--GGYGVSVLPTFSISRC--MFLRHFNGIYAIPNI--RGGGELGED 602
L + V I +I R L NI E+
Sbjct: 210 LLMKKCARVTIGLTADKKAYTKGSEEGNIFRASKKTLFRLLSKAEELNISIEQYNEVLYK 269
Query: 603 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGA 662
+ L +N FD I K +I+I NQ+ E+ G
Sbjct: 270 FTKLQDLAHLENDFDQLP----IEIYAK--DADHISIW----------QASNQKEEIEGV 313
Query: 663 AL-ILVGALDMLRFNKFTIAY 682
A I + R+ I
Sbjct: 314 AREIRQKIREGYRYKDIAILL 334
>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.
Length = 343
Score = 32.0 bits (73), Expect = 1.2
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 341 GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTT-KNAPKGKVVT 399
GSDLHY+ +GK+ G F +K P M HE+I IV + +G+ V
Sbjct: 41 GSDLHYYQ-----EGKV-GNFVIKA--P-MVLGHEVIG-----KIVHSDSSGLKEGQTVA 86
Query: 400 INLNNPC 406
IN + PC
Sbjct: 87 INPSKPC 93
>gnl|CDD|234884 PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.
Length = 341
Score = 30.6 bits (70), Expect = 3.5
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 213 LYAFSDNGKHFAYCLSKSGSDWNTLHI 239
+ S G+H + K G WNTL +
Sbjct: 34 GFEPSGEGEHLLVRIRKRG--WNTLFV 58
>gnl|CDD|215424 PLN02790, PLN02790, transketolase.
Length = 654
Score = 30.0 bits (68), Expect = 5.7
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Query: 196 VFLDPNKLSKDGTTALKLYAFSDN-GKHF-AYCLSKSGSDWNTLHIKDVDTGKD 247
V D N +S DG T AF+++ K + A W+T+ +K+ +T D
Sbjct: 171 VLYDDNHISIDGDTE---IAFTEDVDKRYEAL-------GWHTIWVKNGNTDYD 214
>gnl|CDD|225375 COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 264
Score = 29.3 bits (66), Expect = 6.6
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 627 INKKY-TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL--DMLRFNKFTIA 681
I +Y T + I+G S GGL V L P+ +G ++ +L + +
Sbjct: 128 IEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHNEAILREIES 185
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 29.0 bits (65), Expect = 7.8
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 411 KTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV-MDLHDLN-TGKRLHSFPLDLGQITH 468
+ L+ ++ +LDV A ++L+ Q ++ M HDLN T + H L
Sbjct: 152 QLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLL 211
Query: 469 ISGRRK 474
SGRR+
Sbjct: 212 ASGRRE 217
>gnl|CDD|233151 TIGR00852, pts-Glc, PTS system, maltose and glucose-specific
subfamily, IIC component. The PTS Glucose-Glucoside
(Glc) Family (TC 4.A.1) Bacterial PTS transporters
transport and concomitantly phosphorylate their sugar
substrates, and typically consist of multiple subunits
or protein domains. The Glc family includes permeases
specific for glucose, N-acetylglucosamine and a large
variety of a- and b-glucosides. However, not all
b-glucoside PTS permeases are in this class, as the
cellobiose (Cel) b-glucoside PTS permease is in the Lac
family (TC #4.A.3). These permeases show limited
sequence similarity with members of the Fru family (TC
#4.A.2). Several of the E. coli PTS permeases in the Glc
family lack their own IIA domains and instead use the
glucose IIA protein (IIAglc or Crr). Most of these
permeases have the B and C domains linked together in a
single polypeptide chain, and a cysteyl residue in the
IIB domain is phosphorylated by direct phosphoryl
transfer from IIAglc(his~P). Those permeases which lack
a IIA domain include the maltose (Mal),
arbutin-salicin-cellobiose (ASC), trehalose (Tre),
putative glucoside (Glv) and sucrose (Scr) permeases of
E. coli. Most, but not all Scr permeases of other
bacteria also lack a IIA domain. This model is specific
for the IIC domain of the Glc family PTS transporters
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids, Signal transduction, PTS].
Length = 289
Score = 29.2 bits (66), Expect = 8.2
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 621 AAAEYMINKKYTKPKYITIMGGSNGGLLVG 650
A Y + + +P ++G + +
Sbjct: 223 EPAMYGVALRERRPFVAGLIGSALLTAFLT 252
>gnl|CDD|184326 PRK13788, PRK13788, adenylosuccinate synthetase; Provisional.
Length = 404
Score = 29.4 bits (66), Expect = 9.3
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 596 GGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQ 655
G L E R+L F+ A +++ Y Y+T + GG+LVGA +N
Sbjct: 194 GSLLREAIREGKRVL--------FEGAQATLLDLNYGTYPYVTSSHPTVGGILVGAGVNH 245
Query: 656 RP--ELYGAA 663
+ ++YG A
Sbjct: 246 KAINKVYGVA 255
>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In
Arabidopsis the region carries two binding domains, a
phosphoribosylpyrophosphate-binding domain and, at the
very C-terminus, a uracil-binding domain.
Length = 197
Score = 28.5 bits (64), Expect = 9.6
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 143 DREAIKEQLL-RMANYEKYSAPQRQE 167
EA+ + +L R +Y Y PQ
Sbjct: 158 SLEAVTDSILRRKPDYVNYICPQFSY 183
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.418
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 40,342,072
Number of extensions: 3978872
Number of successful extensions: 3128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3092
Number of HSP's successfully gapped: 29
Length of query: 783
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 678
Effective length of database: 6,280,432
Effective search space: 4258132896
Effective search space used: 4258132896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)