RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2521
(783 letters)
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia,
beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus
scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A*
3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A
1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A
3ddu_A*
Length = 710
Score = 846 bits (2189), Expect = 0.0
Identities = 320/720 (44%), Positives = 447/720 (62%), Gaps = 42/720 (5%)
Query: 55 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIK 114
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+
Sbjct: 5 QYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPF----------- 53
Query: 115 EQLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFH 174
+ R KE++ + +Y KYS ++ YFYF+
Sbjct: 54 -----LEQCP------------------IRGLYKERMTELYDYPKYSCHFKKGKRYFYFY 90
Query: 175 NKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDW 234
N GLQN +LYVQ +L G VFLDPN LS DGT AL+ YAFS++G++FAY LS SGSDW
Sbjct: 91 NTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDW 150
Query: 235 NTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKI 294
T+ VD K+ P+VL+ VKF ++WTHD KG FYN Y +G +DGTET+ ++ QK+
Sbjct: 151 VTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL 210
Query: 295 YYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQG-SDLHYFDLHSLP 353
YYHVLGT+Q +DI EFP+ +E++D GRY+L+S + L Y DL
Sbjct: 211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ-E 269
Query: 354 DGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL 413
I+G +I + ++ + N G KT +++P +++ I+ +P E WK L
Sbjct: 270 SNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL 329
Query: 414 IPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRR 473
+PE E L+ VA V +N L++ Y+ +V++ + LHDL TG L FPL++G + SG++
Sbjct: 330 VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQK 389
Query: 474 KYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRS 533
K E+FY FTSFL PG IYHC++ +++ +P +FRE V + + +QT Q+++ S
Sbjct: 390 KDTEIFYQFTSFLSPGIIYHCDL-----TKEELEPRVFREVTVKGIDASDYQTVQIFYPS 444
Query: 534 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNI 593
KDGT++PM+I+H+ G + +P +YGYGG+ +S+ P +S+SR +F+RH G+ A+ NI
Sbjct: 445 KDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANI 504
Query: 594 RGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACL 653
RGGGE GE WH G L KQNCFDDFQ AAEY+I + YT PK +TI GGSNGGLLV C
Sbjct: 505 RGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCA 564
Query: 654 NQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPP 713
NQRP+L+G + VG +DML+F+K+TI + +++G ++K HF L+ YSPLHN+K+P
Sbjct: 565 NQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPE 624
Query: 714 N-NTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGK 772
+ QYP+ L+LT DHDDRV PLHS KFIATLQ +G Q NPLL+ V+ AGHG GK
Sbjct: 625 ADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGK 684
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase,
protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Length = 695
Score = 771 bits (1994), Expect = 0.0
Identities = 236/719 (32%), Positives = 366/719 (50%), Gaps = 68/719 (9%)
Query: 56 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKE 115
YP R ++ V D HG+++ DPYRWLE E Q + QN +
Sbjct: 3 YPATRAEQVV-DTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREA------------ 49
Query: 116 QLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHN 175
+A + REA+ + + + S P R+ +FY
Sbjct: 50 ----LAKFP------------------GREALAARFKELFYTDSVSTPSRRNGRFFYVRT 87
Query: 176 KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWN 235
+ +ILY ++ +G +V LDPN SKDGT +L +A S +GK A+ + +D
Sbjct: 88 HKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEA 147
Query: 236 TLHIKDVDTGKDY-PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKI 294
LH+ DVD+G+ +V++ K+ + WT D KGF+Y I
Sbjct: 148 VLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI---KVDERPGYTTI 204
Query: 295 YYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPD 354
YH LGTE KD V E + L S+++ G+YL V +D+++
Sbjct: 205 RYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP----- 259
Query: 355 GKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLI 414
G+ + ++ G+ +E+ V T + AP+ +V ++ P +WK ++
Sbjct: 260 ----GEKDFRLLVKGVGAKYEV-HAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIV 314
Query: 415 PEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD-LGQITHISGRR 473
PED + +L V+ V L + Y+++ S + + L GK + + L +G +++ G
Sbjct: 315 PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL-KGKPVRTVQLPGVGAASNLMGLE 372
Query: 474 KYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRS 533
++ +Y FTSF P IY ++ K ++ + VP P +Q +QV++ S
Sbjct: 373 DLDDAYYVFTSFTTPRQIYKTSV-------STGKSELWAKVDVP-MNPEQYQVEQVFYAS 424
Query: 534 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNI 593
KDGT+VPM+++HR R+ P ++YGYGG+ V++ F S +L G+YA+ N+
Sbjct: 425 KDGTKVPMFVVHRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWL-DAGGVYAVANL 483
Query: 594 RGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACL 653
RGGGE G+ WH+AGRL KKQN FDDF AAAEY++ +KYT+PK + I GGSNGGLLVGA +
Sbjct: 484 RGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAM 543
Query: 654 NQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPP 713
QRPELYGA + V LDM+R++ F E+G+ F L +YSP H+++
Sbjct: 544 TQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPEYGTAEKPEDFKTLHAYSPYHHVR--- 600
Query: 714 NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGK 772
+ +YPA L++ DHDDRV P+H+ KF+A +Q G+ LLR+E +AGHG
Sbjct: 601 PDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGN----PATALLRIEANAGHGGAD 655
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB:
3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A*
3mun_A*
Length = 693
Score = 770 bits (1992), Expect = 0.0
Identities = 264/727 (36%), Positives = 388/727 (53%), Gaps = 68/727 (9%)
Query: 55 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIK 114
YP R+ E V D Y G + DPYRWLE ET+ + QN ++ Y
Sbjct: 11 HYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDY----------- 58
Query: 115 EQLLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFH 174
+A R AIKE+L NY K AP R+ +++F
Sbjct: 59 -----LAQIP------------------YRAAIKEKLAASWNYAKEGAPFREGRYHYFFK 95
Query: 175 NKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDW 234
N GLQN ++L+ Q+ EVFLDPN LS DGTTAL +FS +G+ AY LS +GSDW
Sbjct: 96 NDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDW 154
Query: 235 NTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKI 294
+H+ DV++ + LK+VKF ISW + +GFFY+ Y +G + K+
Sbjct: 155 REIHLMDVESKQPLETPLKDVKFSGISWLGN-EGFFYSSYDKPDG---SELSARTDQHKV 210
Query: 295 YYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLP 353
Y+H LGT Q+ D V P + + VT+ R+LL+S +N+T G+ L+ DL
Sbjct: 211 YFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ-E 269
Query: 354 DGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTL 413
+ PL TV +D ++ N G L + T ++AP ++VT++ NP +W+ L
Sbjct: 270 NA------PLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL 323
Query: 414 IPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRR 473
IPE + L V + L Y+ + + ++ D + LG ++ +G+
Sbjct: 324 IPERQQ-VLTV--HSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKH 380
Query: 474 KYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRS 533
+++GF ++ QP T+Y +++R + P F+P + ++Q +++S
Sbjct: 381 DDPALYFGFENYAQPPTLYRFEP-------KSGAISLYRASAAP-FKPEDYVSEQRFYQS 432
Query: 534 KDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNI 593
KDGTRVP+ I +R G + NP I+YGYGG+ VS+ P+FS+S +L G+YA+ N+
Sbjct: 433 KDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANL 491
Query: 594 RGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACL 653
RGGGE G+ WH AG KQN FDDF AAAEY+ + YT+ + I GGSNGGLLVGA +
Sbjct: 492 RGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVM 551
Query: 654 NQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSP-NNKTHFHNLLSYSPLHNIKVP 712
QRP+L AL VG LDMLR++ FT ++G+ +++ F L YSPLHN++
Sbjct: 552 TQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVR-- 609
Query: 713 PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGK 772
YP+T+V T DHDDRV P HS+KF ATLQ +P L+R+E +AGHG G
Sbjct: 610 -PGVSYPSTMVTTADHDDRVVPAHSFKFAATLQA----DNAGPHPQLIRIETNAGHGAGT 664
Query: 773 ALDIELK 779
+ ++
Sbjct: 665 PVAKLIE 671
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study,
celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Length = 741
Score = 765 bits (1979), Expect = 0.0
Identities = 237/750 (31%), Positives = 372/750 (49%), Gaps = 75/750 (10%)
Query: 30 ASSSMSCESGPHPSEERAEKVEFTGPYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAET 89
A+ ++ P ++++A YP + V +D+ G K+ DP+RWLE +
Sbjct: 16 ATPVAFAQTPPTLAKDQAMPSLPP--YPASPQVPLV-EDHFGEKVSDPWRWLEADVRTDA 72
Query: 90 QIFNFM--QNNISNPYCQNHSDREAIKEQLLRMANYEKYSAPHFGVSNPYCQNHTDREAI 147
++ ++ Q+ + Y + +R A+
Sbjct: 73 KVAAWVQAQSAYTAAY----------------LKQLP------------------ERAAL 98
Query: 148 KEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQR---NLTGSTEVFLDPNKLS 204
++++ + +YE++ PQR+ + FY N GL N S L V+ + V LDPN +
Sbjct: 99 EKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWA 158
Query: 205 KDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTH 264
KDG TAL +A SD+G+ AY + GSDW T+ V GK + LK VKF ++W
Sbjct: 159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG 218
Query: 265 DHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEV 324
+ Y+++ + + Q ++ H LGT Q D PV P G + V
Sbjct: 219 N-DALLYSRFAE--PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV 275
Query: 325 TDCGRYLLVSTSNNTQG-SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPE 383
+ GR++++++S T + +H + + G P+ +IP + + + G +
Sbjct: 276 SSDGRWVVITSSEGTDPVNTVHVARVTNGKIG------PVTALIPDLKAQWDFVDGVGDQ 329
Query: 384 LIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRS 443
L + AP K+V ++L+ + T++PE ++ V +A N+L YI + +S
Sbjct: 330 LWFVSGDGAPLKKIVRVDLSGS-TPRFDTVVPESKDNLESV--GIAGNRLFASYIHDAKS 386
Query: 444 VMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITD 502
+ DL+ GK + L +G + +SGR + F+SF QP T+ +
Sbjct: 387 QVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP------ 439
Query: 503 QDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGY 562
K T + + F+P F+ +QV++ SKDGT+VPM+I+ R A P ++YGY
Sbjct: 440 -ATAKTTPWEPVHLT-FDPADFRVEQVFYPSKDGTKVPMFIVRRKDA--KGPLPTLLYGY 495
Query: 563 GGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAA 622
GG+ V++ P FS ++ G +A+ N+RGGGE G+ WH+AGR KKQN FDDF AA
Sbjct: 496 GGFNVALTPWFSAGFMTWIDSG-GAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIAA 554
Query: 623 AEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAY 682
E++I T + I GGSNGGLL+GA NQRP+L+ AA VG +DMLRF++FT
Sbjct: 555 GEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGR 614
Query: 683 YSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIA 742
Y ++G P + + L YSP HN++ + YPA LV T D DDRV P HS+K+ A
Sbjct: 615 YWVDDYGYPEKEADWRVLRRYSPYHNVR---SGVDYPAILVTTADTDDRVVPGHSFKYTA 671
Query: 743 TLQEKIGSLPYQKNPLLLRVEQDAGHGQGK 772
LQ P L+R+E AGHG GK
Sbjct: 672 ALQT----AAIGPKPHLIRIETRAGHGSGK 697
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease
inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A
{Leishmania major}
Length = 751
Score = 639 bits (1651), Expect = 0.0
Identities = 162/776 (20%), Positives = 299/776 (38%), Gaps = 104/776 (13%)
Query: 30 ASSSMSCESGPHPSEE--RAEKVEFTGPYPKVR-KDETVEDDYHGMKIKDPYRWLEYPHC 86
S MS +S S + A K V +D +DPY W+
Sbjct: 17 RGSHMSSDSSVAASAQPPIAAKKPHRVTLGYVEGEDRGPNPMNPPRYREDPYFWMRDDDR 76
Query: 87 AETQIFNFM--QNNISNPYCQNHSDREAIKEQLLRMANYEKYSAPHFGVSNPYCQNHTDR 144
+ + + + A+ + R
Sbjct: 77 KDPAVIEHLNKEKVYFQAR----------------SADIAQL-----------------R 103
Query: 145 EAIKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQR-----NLTGSTEVFLD 199
+ I + + N + SAP +Y + + I + EV +D
Sbjct: 104 DDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIID 163
Query: 200 PNKLSKDGT--TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT-GKDYPEVLKNVK 256
N++++ +++ A+ + SG++ T+ K + + + +
Sbjct: 164 VNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT- 222
Query: 257 FPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGR 316
I W DH FY ET K++ HV+G Q +D+ + E N
Sbjct: 223 NGEIVWGPDHTSLFYVTK---------DET--LRENKVWRHVMGKLQSEDVCLYEEHNPL 271
Query: 317 SLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP-GMDHHHE 375
L + S + + +++H DL K + L+ V P ++
Sbjct: 272 -FSAFMYKAADTNTLCIG-SQSPETAEVHLLDLR-----KGNAHNTLEIVRPREKGVRYD 324
Query: 376 IIANNGPELIVKTTKN-APKGKVVTINLNNPCEKNWKT-LIPEDENRTLDVVAAVANNKL 433
+ + L++ T + A K++ P +W L+ E+ ++ +A +N L
Sbjct: 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQP--SDWSHVLVDHSEDVFMESIAVR-SNYL 381
Query: 434 IVHYIQNVRSVMDLHDLNT-------GKRLHSFPLD-----LGQITHISGRRKYNEVFYG 481
+V + + + ++ G L ++ + + +
Sbjct: 382 VVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRME 441
Query: 482 FTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVP-EFEPTLFQTKQVYFRSKDGTRVP 540
++S P T + + D T + V F+ ++ ++ + + D T++P
Sbjct: 442 YSSLATPNTWFDVSP-------QDHSRTAVKVREVGGGFDAANYKVERRFATAPDQTKIP 494
Query: 541 MYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELG 600
+ +++ ++ P ++YGYG YG+S+ P FSI + I+AI +IRGG ELG
Sbjct: 495 LSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDR-GMIFAIAHIRGGSELG 553
Query: 601 EDWHNAG-RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPEL 659
W+ G + L K+N F DF AAAE+++N K T P + G S GGLL+GA LN RP+L
Sbjct: 554 RAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDL 613
Query: 660 YGAALILVGALDMLRFN---KFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNT 716
+ AL V +D++ + E+G+PN ++ +LSYSP+ N++
Sbjct: 614 FKVALAGVPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNVR----AQ 669
Query: 717 QYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGK 772
+YP +V G HD RV K+++ L+E N +LL ++ ++GH K
Sbjct: 670 EYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKT----DNNEILLNIDMESGHFSAK 721
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 112 bits (283), Expect = 4e-26
Identities = 96/607 (15%), Positives = 184/607 (30%), Gaps = 105/607 (17%)
Query: 183 ILYVQRNLTGSTEVFL----DPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLH 238
+L V GS +L + KL+ L G+ G++ + L
Sbjct: 36 LLVVG-FSEGSVNAYLYDGGETVKLN-REPINSVLDPHYGVGRVILVRDVSKGAEQHALF 93
Query: 239 IKDVDTGKDYPEVLKNVKFPSI-SWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYH 297
+ + + L+ VK I S + + T D + +
Sbjct: 94 KVNTSRPGE-EQRLEAVKPMRILSGVDTGEAVVF-----TGATEDR----------VALY 137
Query: 298 VLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 357
L ++ + P G G + L +L S
Sbjct: 138 ALDGGGLRE--LARLP-----GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS------ 184
Query: 358 SGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED 417
G + G I ++ + A + ++VT++ + + + L
Sbjct: 185 -GGLRVFDSGEGSFSSASISPGM--KVTA-GLETAREARLVTVDPRD---GSVEDLELPS 237
Query: 418 ENRT------LDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 471
++ + + + + + +L V + RS + + G +
Sbjct: 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDG-------ERVEAPQGNHGRVVL 290
Query: 472 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEP-TLFQTKQVY 530
R ++ TS P I +P E +PE ++ ++ V+
Sbjct: 291 WR--GKLVTSHTSLSTPPRIV---------SLPSGEPL--LEGGLPEDLRRSIAGSRLVW 337
Query: 531 FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAI 590
S DG+RVP Y++ A P ++ +GG ++ G + +
Sbjct: 338 VESFDGSRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWDTFAASLAAA--G-FHV 392
Query: 591 --PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLL 648
PN RG GE+W +D AAA + + IMG S GG +
Sbjct: 393 VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYM 450
Query: 649 VGACLNQRPELYGAALILVGALDMLRFNKFT---IAYYSESEFGSPNNKTHFHNLLSYSP 705
L +P L+ A + +D + + + E G + S SP
Sbjct: 451 TLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI-----MRSRSP 505
Query: 706 LH---NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRV 762
++ IK P ++ + R P + + L + ++ +
Sbjct: 506 INHVDRIKEP--------LALIHPQNASRTPLKPLLRLMGELLAR--GKTFE----AHII 551
Query: 763 EQDAGHG 769
DAGH
Sbjct: 552 P-DAGHA 557
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 112 bits (282), Expect = 7e-26
Identities = 61/362 (16%), Positives = 107/362 (29%), Gaps = 54/362 (14%)
Query: 427 AVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGF-TSF 485
A N LI +V+ + D +G+ + + G S
Sbjct: 300 APLANGLIAVVHGKGAAVLGILDPESGELV---DAAGPWTEWAATLTVSGTRAVGVAASP 356
Query: 486 LQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLF-QTKQVYFRSKDGTRVPMYII 544
+ D + +P + + + F + DG + +I
Sbjct: 357 RTAYEVVEL-------DTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409
Query: 545 ----HRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRH--F--NGIYAI--PNIR 594
+ P ++ +GG PT + + L F G + N
Sbjct: 410 PPHSPDFTGPADELPPYVVMAHGG------PTSRVPAVLDLDVAYFTSRG-IGVADVNYG 462
Query: 595 GGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN 654
G G + R +D A A + + + + GGS GG + L
Sbjct: 463 GSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLV 522
Query: 655 QRPELYGAALILVGALDMLRFNKFTI----AYYSESEFGSPNNKTHFHNLLSYSPLH--- 707
++Y +L LD+L + + Y + GS +PL
Sbjct: 523 S-TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPER--YRDRAPLTRAD 579
Query: 708 NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAG 767
++VP L+L G D PP +F+ + +P+ L E G
Sbjct: 580 RVRVP--------FLLLQGLEDPVCPPEQCDRFLEAVAGC--GVPHA----YLSFE-GEG 624
Query: 768 HG 769
HG
Sbjct: 625 HG 626
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 81.4 bits (201), Expect = 4e-17
Identities = 35/252 (13%), Positives = 70/252 (27%), Gaps = 44/252 (17%)
Query: 525 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFL-RH 583
+ + + ++ G P +++ +G S + R
Sbjct: 5 KLSSIEIPV-GQDELSGTLLTPTGM------PGVLFVHGW-------GGSQHHSLVRARE 50
Query: 584 FNGI-YAI--PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIM 640
G+ ++RG + R DD +AA + + + Y I ++
Sbjct: 51 AVGLGCICMTFDLRGHEGYASMRQSVTR----AQNLDDIKAAYDQLASLPYVDAHSIAVV 106
Query: 641 GGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNL 700
G S GG L +RP AL +++ ++ ++ + +
Sbjct: 107 GLSYGGYLSALLTRERPV-EWLALRSPALYKDAHWDQPKVSLNADPDLMDYRRR--ALAP 163
Query: 701 LSYSPLH---NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP 757
L K L++ ++D VP +
Sbjct: 164 GDNLALAACAQYKGD--------VLLVEAENDVIVPHPVMRNYADAFT--------NARS 207
Query: 758 LLLRVEQDAGHG 769
L RV A H
Sbjct: 208 LTSRVIAGADHA 219
>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha
sandwich, PSI, protein structure initiative; 1.50A
{Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A
3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*
Length = 318
Score = 76.7 bits (189), Expect = 3e-15
Identities = 50/296 (16%), Positives = 77/296 (26%), Gaps = 65/296 (21%)
Query: 517 PEFEPTLFQTKQ-----VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGG--YGV 567
P+ +P + + ++S R+ + +P I+ GY G
Sbjct: 42 PDLQPVDYPADGVKVYRLTYKSFGNARITGWYAVPDKE---GPHPAIVKYHGYNASYDGE 98
Query: 568 SVLPTFSISRCMFLRHFNGIYAI--PNIRGGGELGED----------WHNAGRLLKKQN- 614
G YA +RG + W G L K
Sbjct: 99 IHEMVNWALH--------G-YATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYY 149
Query: 615 ---CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 671
+ D A E + + I + GGS GG L A A +
Sbjct: 150 YRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSN 209
Query: 672 MLRFNKFTIAYYSES------EFGSP-NNKTHFHNLLSYSPLH---NIKVPPNNTQYPAT 721
R + GSP L + ++ +KVP
Sbjct: 210 FERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVP--------V 261
Query: 722 LVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGKALDIE 777
L+ G D PP + L + L+V + GH A E
Sbjct: 262 LMSIGLIDKVTPPSTVFAAYNHL----------ETKKELKVYRYFGHEYIPAFQTE 307
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 76.8 bits (189), Expect = 3e-15
Identities = 46/288 (15%), Positives = 77/288 (26%), Gaps = 57/288 (19%)
Query: 518 EFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISR 577
F+ + + +YF G R+ I ++P +I +G S
Sbjct: 74 SFQVSFAECYDLYFTGVRGARIHAKYIKPKTE---GKHPALIRFHGYSSNSGDWND---- 126
Query: 578 CMFLRHFNGIYAI--PNIRGGGELGEDWHNAGR----------------LLKKQNCFDDF 619
G + + ++RG G +D + ++ F D
Sbjct: 127 -KLNYVAAG-FTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDT 184
Query: 620 QAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT 679
A ++N + +MG S GG L AC P + D R
Sbjct: 185 AQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSDYKRVWDLD 244
Query: 680 IAYYSESEFG---------SPNNKTHFHNLLSYSPLH---NIKVPPNNTQYPATLVLTGD 727
+A + E F L + IK L+ G
Sbjct: 245 LAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGD--------VLMCVGL 296
Query: 728 HDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGKALD 775
D PP + +Q ++V D GH +
Sbjct: 297 MDQVCPPSTVFAAYNNIQS----------KKDIKVYPDYGHEPMRGFG 334
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 66.9 bits (163), Expect = 7e-12
Identities = 47/248 (18%), Positives = 74/248 (29%), Gaps = 43/248 (17%)
Query: 535 DGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHFNGIYAIPN 592
DG +P+Y+ G +P +I G S + A +
Sbjct: 135 DGIPMPVYVRIPEGP---GPHPAVIMLGGLESTK-----EESFQMENLVLDRGMATATFD 186
Query: 593 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 652
G GE+ E AG + A + + + + I ++G S GG
Sbjct: 187 GPGQGEMFEYKRIAG------DYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKS 240
Query: 653 LNQRPELYGAALILVGAL-DMLRFNKFTIAYYSESEFGSPNNKT---HFHNLLSYSP--- 705
P L AA I G D+ ++ T ++ S + H +
Sbjct: 241 AACEPRL--AACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDV 298
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 765
L I P T +L G D VP + + + L L VE+D
Sbjct: 299 LSQIACP--------TYILHGV-HDEVPLSFVDTVLELVPAE---------HLNLVVEKD 340
Query: 766 AGHGQGKA 773
H
Sbjct: 341 GDHCCHNL 348
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 65.3 bits (159), Expect = 2e-11
Identities = 47/287 (16%), Positives = 75/287 (26%), Gaps = 50/287 (17%)
Query: 517 PEFEPTLFQTKQ-----VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP 571
P FE K V F G R+ +++ V L + P ++ G G P
Sbjct: 54 PVFERMESHLKTVEAYDVTFSGYRGQRIKGWLL--VPKLEEEKLPCVVQYIGYNGGRGFP 111
Query: 572 ------------TFSI-SRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ----N 614
F + +R G + G L +
Sbjct: 112 HDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRR 171
Query: 615 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR 674
F D A E + + I I GGS GG + A + + R
Sbjct: 172 VFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRR 231
Query: 675 FNKFT--IAYYSESEFGSPNNKTH---FHNLLSYSPLH---NIKVPPNNTQYPATLVLTG 726
+ Y + F + F L + ++ K+P L G
Sbjct: 232 AVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIP--------ALFSVG 283
Query: 727 DHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGKA 773
D+ PP + P +R+ H G +
Sbjct: 284 LMDNICPPSTVFAAYNYYAG----------PKEIRIYPYNNHEGGGS 320
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 65.2 bits (158), Expect = 3e-11
Identities = 38/264 (14%), Positives = 71/264 (26%), Gaps = 47/264 (17%)
Query: 523 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLR 582
F V+ +S RV + G P II +G G R L
Sbjct: 129 HFLPPGVWRQSVRAGRVRATLFLPPGP---GPFPGIIDIFGIGG-----GLLEYRASLLA 180
Query: 583 HFNGIYAI-PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMG 641
+G + +L + N + F+ A YM+ K I ++G
Sbjct: 181 G-HGFATLALAYYNFEDLPNNMDNIS--------LEYFEEAVCYMLQHPQVKGPGIGLLG 231
Query: 642 GSNGGLLVGACLNQRPELYGAALILVGALDM----------LRFNKFTIAYYSESEFGSP 691
S G + + + + I + + + + + G
Sbjct: 232 ISLGADICLSMASFLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLV 291
Query: 692 NNKTHFHNLL------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 745
+ + L+ S P+ + P L++ G D + ++
Sbjct: 292 DIVDIRNALVGGYKNPSMIPIEKAQGP--------ILLIVGQDDHNWRSELYAQTVSERL 343
Query: 746 EKIGSLPYQKNPLLLRVEQDAGHG 769
+ G Q GH
Sbjct: 344 QAHGKEKPQI-----ICYPGTGHY 362
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 64.1 bits (156), Expect = 1e-10
Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 10/224 (4%)
Query: 526 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSIS-RCMFLRH 583
+K++ F + T+ +I ++++ P+++ Y G F ++
Sbjct: 473 SKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLAST 532
Query: 584 FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGS 643
N I A + RG G G+ +A +D AA + K I I G S
Sbjct: 533 ENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWS 592
Query: 644 NGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY 703
GG + L ++ + + ++ + Y+E G P + + + +
Sbjct: 593 YGGYVTSMVLGSGSGVFKCGIAVAPVSR----WEYYDSVYTERYMGLPTPEDNLDHYRNS 648
Query: 704 SPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 747
+ + + N + L++ G DD V S + L +
Sbjct: 649 TVMSRAE----NFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 688
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 62.2 bits (151), Expect = 4e-10
Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 10/215 (4%)
Query: 535 DGTRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSIS-RCMFLRHFNGIYAIPN 592
D + +I R+++ P++I YGG SV F+++ + A+ +
Sbjct: 476 DEITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVD 535
Query: 593 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 652
RG G+ A +D A I + K I I G S GG +
Sbjct: 536 GRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLA 595
Query: 653 LNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVP 712
L L+ + + ++ + Y+E G P + + + + + +
Sbjct: 596 LASGTGLFKCGIAVAPVSS----WEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAE-- 649
Query: 713 PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 747
+ L++ G DD V +S + L
Sbjct: 650 --YFRNVDYLLIHGTADDNVHFQNSAQIAKALVNA 682
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 57.8 bits (139), Expect = 2e-09
Identities = 31/232 (13%), Positives = 60/232 (25%), Gaps = 32/232 (13%)
Query: 544 IHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 601
+ + + +++ G G +L + R F + + GE
Sbjct: 13 LSVLARIPEAPKALLLALHGLQGSKEHILA---LLPGYAERGFLLL--AFDAPRHGEREG 67
Query: 602 DWHNAGRLLK----KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRP 657
++ + + A + + + GGS G + L +
Sbjct: 68 PPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGF 127
Query: 658 ELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQ 717
G +G+ ++ + + P
Sbjct: 128 RPRGVL-AFIGSGFPMKL----------PQGQVVEDPGVLAL-YQAPPATR----GEAYG 171
Query: 718 YPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 769
L L G D VP K + L+ Y + L VE+ AGH
Sbjct: 172 GVPLLHLHGSRDHIVPLARMEKTLEALRPH-----YPEGRLARFVEEGAGHT 218
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 58.9 bits (142), Expect = 3e-09
Identities = 60/375 (16%), Positives = 106/375 (28%), Gaps = 61/375 (16%)
Query: 384 LIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRS 443
LI K K V I + + L P+ + + ++ + Y N
Sbjct: 11 LITKVFPEGEKVCAVVIEYPVEIDG--QKLSPDQFSVKVKTGDTYSSRTITKVYANNSGG 68
Query: 444 VMDLHDLNTGKR--LHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENIT 501
+ N GK L DL T + G N Q I+ + N
Sbjct: 69 LSFSIFNNRGKYVVLELSTEDLHSNTIVFGPNFLNTRMKLDYIVSQLVPIFDVD--GNEV 126
Query: 502 DQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHR-VGALRNRRNPVIIY 560
+ K T + I+ +F + + G +P Y + +R+ P++++
Sbjct: 127 EPFTSKQTDEKHLIIDDFL------AFTFKDPETGVEIP-YRLFVPKDVNPDRKYPLVVF 179
Query: 561 --GYGGYGVSVLPTFSISRC-------MFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLK 611
G G G + +R + P + +
Sbjct: 180 LHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRENPFN 239
Query: 612 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 671
+ ++++ I I G S GG + + PEL+ AA+ + G D
Sbjct: 240 PEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGD 299
Query: 672 MLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDR 731
+ S + IK P V + D
Sbjct: 300 V-------------------------------SKVERIKDIP-------IWVFHAEDDPV 321
Query: 732 VPPLHSYKFIATLQE 746
VP +S + L E
Sbjct: 322 VPVENSRVLVKKLAE 336
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 57.9 bits (139), Expect = 6e-09
Identities = 38/261 (14%), Positives = 70/261 (26%), Gaps = 48/261 (18%)
Query: 530 YFRSKDGTRVPMYIIHRVGAL----RNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFN 585
YF R P+ + G L P I+ +G G R L
Sbjct: 145 YFLPPGVRREPVRVGRVRGTLFLPPEPGPFPGIVDMFGTGG-----GLLEYRASLLAG-K 198
Query: 586 GIYAI-PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSN 644
G + +L + + F+ A Y+++ K + ++G S
Sbjct: 199 GFAVMALAYYNYEDLPKTMETLH--------LEYFEEAMNYLLSHPEVKGPGVGLLGISK 250
Query: 645 GGLLVGACLNQRPELYGAALILVGALDM----------LRFNKFTIAYYSESEFGSPNNK 694
GG L + + + A +I ++ L ++ G +
Sbjct: 251 GGELCLSMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIV 310
Query: 695 THFHNLL------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI 748
++ L S+ P+ + L L G D +
Sbjct: 311 DVLNSPLEGPDQKSFIPVERAEST--------FLFLVGQDDHNWKSEFYANEACKRLQAH 362
Query: 749 GSLPYQKNPLLLRVEQDAGHG 769
G Q + + GH
Sbjct: 363 GRRKPQ-----IICYPETGHY 378
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 55.9 bits (135), Expect = 4e-08
Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 23/199 (11%)
Query: 556 PVIIYGYGG-YGVSVLPTFSISRCMFLRHF--NGIYAIPNI--RGGGELGEDWHNAGRLL 610
PVI+Y YGG + V T+ S + + G YA+ + RG G +
Sbjct: 486 PVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKG-YAVFTVDSRGSANRGAAFEQVIHRR 544
Query: 611 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 670
Q D +++ ++ + I + G S GG + + +++ + +
Sbjct: 545 LGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVI 604
Query: 671 DMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY---SPLHNIKVPPNNTQYPATLVLTGD 727
D Y E F +P N Y + L +++ G
Sbjct: 605 D----WNRYAIMYGERYFDAPQE-----NPEGYDAANLLKRAGDLKGR-----LMLIHGA 650
Query: 728 HDDRVPPLHSYKFIATLQE 746
D V HS F+ +
Sbjct: 651 IDPVVVWQHSLLFLDACVK 669
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 54.0 bits (130), Expect = 6e-08
Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 36/153 (23%)
Query: 622 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV-GALDMLRFNKFTI 680
E+ IN P+ + ++G S GG L N +IL
Sbjct: 111 HKEWQIN-----PEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSF-------- 157
Query: 681 AYYSESEFGSPNNKTHFH----NLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH 736
FG P++ +HF+ N+ Y+ + + P T + D+ VP +
Sbjct: 158 ------TFGWPSDLSHFNFEIENISEYNISEKV-----TSSTPPTFIWHTADDEGVPIYN 206
Query: 737 SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 769
S K+ L + + P + HG
Sbjct: 207 SLKYCDRLSKH-------QVPFEAHFFESGPHG 232
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 53.5 bits (129), Expect = 6e-08
Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 44/255 (17%)
Query: 530 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHFNGI 587
+ DG ++ Y+ + P+ I G+ G+ ++ L G+
Sbjct: 4 MYIDCDGIKLNAYLDMPKN--NPEKCPLCIIIHGFTGHSEERHIV-AVQE--TLNE-IGV 57
Query: 588 YAI-PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGG 646
+ ++ G G+ + + L K + A +Y + I + G S GG
Sbjct: 58 ATLRADMYGHGKSDGKFEDHT-LFKWL---TNILAVVDYAKKLDFVTD--IYMAGHSQGG 111
Query: 647 LLVGACLNQRPELYGAALILVGA------------LDMLRFNKFTIAYYSESEFGSPNNK 694
L V ++ ALI + L L+F+ I ++ G
Sbjct: 112 LSVMLAAAMERDII-KALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKG 170
Query: 695 THFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQ 754
+ + + P L++ GD D+ VP S F
Sbjct: 171 NYVRVAQTIRVEDFVD----KYTKP-VLIVHGDQDEAVPYEASVAFSKQY---------- 215
Query: 755 KNPLLLRVEQDAGHG 769
KN L+ + H
Sbjct: 216 KNCKLVTIP-GDTHC 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 7e-08
Identities = 54/386 (13%), Positives = 104/386 (26%), Gaps = 128/386 (33%)
Query: 430 NNKLIVHYIQNVRSVMDLHDLNTGKR--LHSFPLDLGQITHISGRR-KYNEVFYGFTSFL 486
++ + D D+ + L +D HI + + F + L
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-----HIIMSKDAVSGTLRLFWTLL 72
Query: 487 -QPGTIYHCNIPENITDQDDFK---PTIFRETIVPEFEPTLFQTKQVYFRSK---DGTRV 539
+ + + E + ++K I E P ++ + R + D
Sbjct: 73 SKQEEMVQKFVEE--VLRINYKFLMSPIKTEQRQPSMMTRMY----IEQRDRLYNDNQVF 126
Query: 540 PMYIIHR---VGALRN-----RRNP-VIIYGYGGYGVSVLPTFSISRCMFLRHF-NGIYA 589
Y + R LR R V+I G G G + + I+
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF- 185
Query: 590 IPNIRGGGELGEDWHNAGR------LLKKQN--CFD---DFQAAAEYMINKKY------T 632
W N +L+ + ++ + +++ N K
Sbjct: 186 -------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 633 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR----FNKF--------TI 680
+ + + L +P Y L LV L ++ +N F T
Sbjct: 233 ELRRL---------------LKSKP--YENCL-LV--LLNVQNAKAWNAFNLSCKILLTT 272
Query: 681 AYYSESEFGSPNNKTHF---HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 737
+ ++F S TH H+ ++ +P L
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTP-------------DEVKSL------------- 306
Query: 738 YKFIATLQEKIGSLPYQK---NPLLL 760
+ L + LP + NP L
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRL 330
Score = 54.1 bits (129), Expect = 2e-07
Identities = 68/521 (13%), Positives = 143/521 (27%), Gaps = 165/521 (31%)
Query: 60 RKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHSDREAIKEQLLR 119
K E + + ++ Y++L + I + ++ +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLM------SPI------------------KTEQRQPSMM 108
Query: 120 MANYEKYSAPHFGVSNPYCQNHTDREAIKEQL------LR---------MANYEK----- 159
Y + + + + + + R +L LR + K
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 160 -----YSAPQRQENNYFYFHNKGLQN--HSILYVQRNLTGSTEVFLDPNKLSK-DGTTAL 211
Y + + F+ N N ++L + + L +DPN S+ D ++ +
Sbjct: 169 DVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLL----YQIDPNWTSRSDHSSNI 223
Query: 212 KLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPE---VLKNVKFPSISWTHDHKG 268
KL ++ + K Y VL NV+ W
Sbjct: 224 KL-----------------RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-W----NA 261
Query: 269 FFYNQYCDI-NGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNG----RSLGLHSE 323
F N C I T T L I + L +
Sbjct: 262 F--NLSCKILLTTRFKQVTD----------FLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 324 VTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLK-TVIPGMDHHHEIIANNGP 382
DC LP ++ P + ++I +N
Sbjct: 310 YLDC--------------------RPQDLPREVLTT-NPRRLSIIAESIRDGLATWDN-- 346
Query: 383 ELIVKTTKNAPKGKVVTINLNN--PCE--KNWKTL--IPEDENRTLDVVAAVANNK---- 432
K ++ +LN P E K + L P + +++ + +
Sbjct: 347 ---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 433 --LIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQ------------ITHISGRRKY-NE 477
++V+ + S+++ + + S L+L + H + + + ++
Sbjct: 404 VMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 478 VF-------YGFTSFLQPGTIYHCNIPENITDQDDFKPTIF 511
Y F S + G +H E+ ++ +F
Sbjct: 463 DLIPPYLDQY-FYSHI--G--HHLKNIEH-PERMTLFRMVF 497
Score = 39.8 bits (92), Expect = 0.003
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 30/118 (25%)
Query: 69 YHGMKIKDPYRWLEYPHCAETQI---FNFMQNNISNPYCQNHSDREAIKEQLLRMANYEK 125
+H I+ P R + + F F++ I + + +I L ++ Y+
Sbjct: 479 HHLKNIEHPERMTLFR-----MVFLDFRFLEQKIRHD-STAWNASGSILNTLQQLKFYKP 532
Query: 126 YSAPHFGVSNPYCQNHTDREAIKEQLLR-MANYEK--YSAPQR--------QENNYFY 172
Y C N E + +L + E+ + E+ +
Sbjct: 533 Y----------ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 39.5 bits (91), Expect = 0.005
Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 52/182 (28%)
Query: 117 LLRMANYEKYSAPHFGVSNPYCQNHTDREAIKEQLLRMANYEKYSAPQR---------QE 167
+ + S P + + A+ ++ + Y+ P+
Sbjct: 417 VEKQPKESTISIPSIYLE--LKVKLENEYALHRSIV-----DHYNIPKTFDSDDLIPPYL 469
Query: 168 NNYFYFHNKGLQNH--SILYVQRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAY 225
+ YFY H + +H +I + +R +T VFLD L + K+ +H +
Sbjct: 470 DQYFYSH---IGHHLKNIEHPER-MTLFRMVFLDFRFLEQ------KI-------RHDST 512
Query: 226 CLSKSGSDWNTL--------HIKDVDTGKDYPEVLKNV-KF-PSISWTHDHKGFFYNQYC 275
+ SGS NTL +I D D Y ++ + F P I + +Y
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDP--KYERLVNAILDFLPKIE-ENLICS----KYT 565
Query: 276 DI 277
D+
Sbjct: 566 DL 567
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 54.1 bits (130), Expect = 2e-07
Identities = 39/222 (17%), Positives = 69/222 (31%), Gaps = 22/222 (9%)
Query: 535 DGTRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSIS-RCMFLRHFNGIYAIPN 592
D +PM I+ P+++ G SV F +S + + + +
Sbjct: 476 DDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCD 535
Query: 593 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 652
RG G G + R D A M+ ++Y + + G GG L
Sbjct: 536 GRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYI 595
Query: 653 LNQRPELYG----AALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY---SP 705
L + E G L D K + +SE G + +Y
Sbjct: 596 LPAKGENQGQTFTCGSALSPITD----FKLYASAFSERYLGLHGL-----DNRAYEMTKV 646
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 747
H + + L++ D+++ H+ + I L
Sbjct: 647 AHRVS----ALEEQQFLIIHPTADEKIHFQHTAELITQLIRG 684
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 51.0 bits (122), Expect = 6e-07
Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 25/154 (16%)
Query: 622 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA 681
A+ + ++ + I + G S GG +V A N + I
Sbjct: 101 ASAHHVD-----CQRIILAGFSAGGHVV-ATYNGVATQPELRTRYHLDHYQGQHA-AIIL 153
Query: 682 YYSESEFGSPNNKTHFH-NLLS-----YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPL 735
Y + + T N ++ ++ + V D+ VPP+
Sbjct: 154 GYPVIDLTAGFPTTSAARNQITTDARLWAAQRLV-----TPASKPAFVWQTATDESVPPI 208
Query: 736 HSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 769
+S K++ + + + + HG
Sbjct: 209 NSLKYVQAMLQH-------QVATAYHLFGSGIHG 235
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 7e-07
Identities = 113/653 (17%), Positives = 177/653 (27%), Gaps = 281/653 (43%)
Query: 40 PHPSEERAEKVEFTGPYPKVRK-----DETVEDDYHGMKIKDPYRWLEYPHCAETQI--F 92
P P+E A E T P V K VE G ++ + F
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG----------QFDQVLNLCLTEF 91
Query: 93 --NFMQ-NNISNPYCQNHS-------DREAI---KEQLLRMANYEKYSAPHFGVSNPYCQ 139
+++ N+I H+ + + ++L++ NY +A P+ +
Sbjct: 92 ENCYLEGNDI-------HALAAKLLQENDTTLVKTKELIK--NY--ITARIM-AKRPFDK 139
Query: 140 NHTDREAIKEQLLRMANYEKYSAPQR-------QENNYFYFHNKGLQNHSILY------V 186
L R + Q N YF + L++ LY V
Sbjct: 140 KSNSA------LFRAVGEGNA----QLVAIFGGQGNTDDYF--EELRD---LYQTYHVLV 184
Query: 187 QRNLTGSTEVFLDPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSD---WNTLHIKDVD 243
+ S E ++L + A K++ G + W L
Sbjct: 185 GDLIKFSAETL---SELIRTTLDAEKVF--------------TQGLNILEW--LENPSNT 225
Query: 244 TGKDY----PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYY--- 296
KDY P + P I Q AH Y
Sbjct: 226 PDKDYLLSIP-----ISCPLIGVI---------Q-------------LAH-----YVVTA 253
Query: 297 HVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFD-------- 348
+LG P + T + L+ + + S +F
Sbjct: 254 KLLGFT-----PGELRSYLKGA------TGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 349 -----LHSLPDGKISGKFPLKTVIPGMDHHHEIIANN--GP---------------ELIV 386
+ +P ++ P + + + NN P + +
Sbjct: 303 LFFIGVRCY------EAYPNTSLPPSI--LEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 387 KTTKNAPKGKVVTINL-NNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 445
KT + P GK V I+L N + L VV+
Sbjct: 355 KTNSHLPAGKQVEISLVNGA--------------KNL-VVSG---------------PPQ 384
Query: 446 DLHDLNTGKRLHSFPLDLGQ--ITHISGRR-----KYNEVFYGF-TSFLQPGT------- 490
L+ LN R P L Q I S R+ ++ V F + L P +
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPF-SERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 491 ---------------IYH-----------CNIPENITDQDDFKP------TIFRETIVPE 518
+Y +I E I D P T F+ T + +
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 519 FEP-------TLFQTKQVYFRSKDGT--RVPMYIIHRVGALRNRRNPVIIYGY 562
F P L R+KDGT RV I+ G L NP YG+
Sbjct: 504 FGPGGASGLGVLTH------RNKDGTGVRV---IV--AGTLDI--NPDDDYGF 543
Score = 42.3 bits (99), Expect = 7e-04
Identities = 84/563 (14%), Positives = 144/563 (25%), Gaps = 227/563 (40%)
Query: 238 HIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDIN-------GTADGTETTAHM 290
+ + + +VL T + DI+ D T
Sbjct: 70 SLVEPSKVGQFDQVLNLC------LTEFENCYLEGN--DIHALAAKLLQENDTTLVKTKE 121
Query: 291 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNT---------QG 341
K Y P + N S L + QG
Sbjct: 122 LIKNYITARIMA---KRPFDKKSN--SA------------LFRAVGEGNAQLVAIFGGQG 164
Query: 342 SDLHYFD----LHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPEL--IVKTTKNAPKG 395
+ YF+ L+ + ++I + L +++TT +A K
Sbjct: 165 NTDDYFEELRDLYQTYHVLVG----------------DLIKFSAETLSELIRTTLDAEKV 208
Query: 396 KVVTINLNNPCEKNWKTLIPEDENRTLDV----VAAVANNKLI-----VHYIQNVRSVMD 446
+N+ W L E+ + T D ++ LI HY+ +
Sbjct: 209 FTQGLNI-----LEW--L--ENPSNTPDKDYLLSIPIS-CPLIGVIQLAHYVVTAK---- 254
Query: 447 LHDLNTGKRLHSFPLDLGQITHISG-------------------RRKYNEV-FY-GFTSF 485
L G+ G H G RK V F+ G
Sbjct: 255 LLGFTPGELRSYLK---GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC- 310
Query: 486 LQ---PGTIYHCNIPENITDQDDFK-----PT-------IFRETI---VPEFEPTLFQTK 527
P + ++P +I +D + P+ + +E + V + L K
Sbjct: 311 -YEAYP----NTSLPPSIL-EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 528 QVYFRSKDGTRVPMYIIHRVGALRN-RRNPVIIYGYGG-----YGVSVL----------- 570
QV I +L N +N V+ G YG+++
Sbjct: 365 QV------------EI-----SLVNGAKNLVV----SGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 571 ----------PTFSISRCMFLR---HFNGIY---AIPNIRG----------GGEL----- 599
FS FL F+ A I ++
Sbjct: 404 QSRIPFSERKLKFSNR---FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 600 ----GEDW----HNAGRLLKKQNCFD--DFQAAAEYMINKKYTKPKYITIMG-GSNGGLL 648
G D + + ++ + K +I G G GL
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ-------FKATHILDFGPGGASGL- 512
Query: 649 VGACLNQRPELYGAALILVGALD 671
G ++ + G +I+ G LD
Sbjct: 513 -GVLTHRNKDGTGVRVIVAGTLD 534
Score = 37.7 bits (87), Expect = 0.017
Identities = 38/191 (19%), Positives = 54/191 (28%), Gaps = 72/191 (37%)
Query: 603 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGA 662
W+ A K F + + +IN P +TI G G + R E Y +
Sbjct: 1646 WNRADNHFKDTYGF----SILDIVINN----PVNLTIHFGGEKGKRI------R-ENY-S 1689
Query: 663 ALILVGALDMLRFNKFTIAYYSESE----FGSPN---NKTHFHNLLSYSPLHNIKVPPNN 715
A+I +D + +E F S + T F
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF------------------ 1731
Query: 716 TQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGH--G---- 769
TQ PA L L L+ K G +P + AGH G
Sbjct: 1732 TQ-PA-LTLM-----------EKAAFEDLKSK-GLIP--ADATF------AGHSLGEYAA 1769
Query: 770 ---QGKALDIE 777
+ IE
Sbjct: 1770 LASLADVMSIE 1780
Score = 35.0 bits (80), Expect = 0.12
Identities = 55/289 (19%), Positives = 90/289 (31%), Gaps = 102/289 (35%)
Query: 245 GKD-Y--PEVLKNVKFPSISWTHDH-KGFFYNQY----CDINGTADGTETTAHM----GQ 292
G D Y + ++V W + F + Y DI + T H G+
Sbjct: 1632 GMDLYKTSKAAQDV------W--NRADNHFKDTYGFSILDIV-INNPVNLTIHFGGEKGK 1682
Query: 293 KIY--YHVLGTEQDKDIPVVEFPNGRSLGLH-SEVTDCG-RYLLVSTSNNTQ-----GSD 343
+I Y + E D + + + H + T + LL +T TQ
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-TQPALTLMEK 1741
Query: 344 LHYFDL--------------HSLPDGKIS------GKFPLKTVIP-----GM-------- 370
+ DL HSL G+ + +++++ GM
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSL--GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 371 DHH----HEIIANNGPELIVKTTK-----------NAPKGKVVTI-NLNNPCEKNWKTLI 414
D + +IA N P + + G +V I N N N + +
Sbjct: 1800 DELGRSNYGMIAIN-PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE---NQQYVA 1855
Query: 415 PEDENRTLDVVAAVAN-NKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD 462
D R LD V V N K +Q + D+ +L S L+
Sbjct: 1856 AGD-LRALDTVTNVLNFIK-----LQKI----DIIELQ-----KSLSLE 1889
Score = 32.3 bits (73), Expect = 0.85
Identities = 62/382 (16%), Positives = 98/382 (25%), Gaps = 155/382 (40%)
Query: 340 QGS-------DLHYFDLHSLPDGKISGKFPL-KTVIPGMDHHH---------EIIANNGP 382
QGS DL Y + V D+H +I+ NN
Sbjct: 1624 QGSQEQGMGMDL-Y------------KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV 1670
Query: 383 ELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR 442
L + KGK + N + + D + + N
Sbjct: 1671 NLTIHFG--GEKGKRIRENYSAMIFET-----IVDGKLKTEKIFKEINEHS--------T 1715
Query: 443 SVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITD 502
S + G L T F QP
Sbjct: 1716 SYTFRSE--KGL------LSA-------------------TQFTQPA------------- 1735
Query: 503 QDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYII-HRVG---ALRNRRNPVI 558
+ + E F+ +SK H +G AL
Sbjct: 1736 -------LT--LM----EKAAFE----DLKSKGLIPADATFAGHSLGEYAAL-------- 1770
Query: 559 IYGYGGYGVSVLPTFSISRCMFLRHFNGIY---AIPNIRGGGELGEDWH-----NAGRLL 610
V+ S+ +F R G+ A+P ELG + N GR+
Sbjct: 1771 -ASLAD----VMSIESLVEVVFYR---GMTMQVAVP----RDELGRSNYGMIAINPGRVA 1818
Query: 611 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELY---G--AAL- 664
+ Q A +Y++ + +G G L+ N + Y G AL
Sbjct: 1819 ASFS-----QEALQYVVER----------VGKRTGWLVEIVNYNVENQQYVAAGDLRALD 1863
Query: 665 ILVGALDMLRFNKFTIAYYSES 686
+ L+ ++ K I +S
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKS 1885
Score = 30.4 bits (68), Expect = 2.7
Identities = 31/210 (14%), Positives = 53/210 (25%), Gaps = 92/210 (43%)
Query: 617 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA-CLNQRPELYGAALILVGALD---- 671
+ F + K IT++ +G C P IL +L+
Sbjct: 290 ESFFVSVR----------KAITVL------FFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 672 ----ML---------------RFNKFT-------IAYYSESEFGSPNNKTHFHNLLSYSP 705
ML + N I+ N + ++S P
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV--------NGAKNL--VVSGPP 383
Query: 706 ---------LHNIKVPPNNTQY--PATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQ 754
L K P Q P +R S +F+ + P+
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIP--------FSERKLKF-SNRFLPV------ASPFH 428
Query: 755 KNPLLL----RVEQDAGHG----QGKALDI 776
+ LL+ + +D K + I
Sbjct: 429 -SHLLVPASDLINKDLVKNNVSFNAKDIQI 457
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 51.3 bits (123), Expect = 9e-07
Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 22/203 (10%)
Query: 552 NRRNPVIIYGYGGYGV-SVLPTFSISRCMFLRHF---NG-IYAIPNIRGGGELGEDWHNA 606
+R PV +Y YGG +V ++ + G + + RG G D+ A
Sbjct: 514 AKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGA 573
Query: 607 GRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL 666
+ D ++ + + P I + G SNGG + L + + Y +
Sbjct: 574 LYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAG 633
Query: 667 VGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY---SPLHNIKVPPNNTQYPATLV 723
D ++Y+E P N Y L +I+ + L+
Sbjct: 634 APVTD----WGLYDSHYTERYMDLPAR-----NDAGYREARVLTHIEGLRSP-----LLL 679
Query: 724 LTGDHDDRVPPLHSYKFIATLQE 746
+ G DD V +S ++ LQ+
Sbjct: 680 IHGMADDNVLFTNSTSLMSALQK 702
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 50.3 bits (119), Expect = 1e-06
Identities = 30/264 (11%), Positives = 63/264 (23%), Gaps = 46/264 (17%)
Query: 508 PTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV 567
V + + ++ F + ++ + I G G
Sbjct: 69 KRQPSPVCVKTEKKEGYILEKWEFYPFPKSVSTFLVLKPEHLKGAVPGVLCIPGSGRTKE 128
Query: 568 SVLPTFSISRCMFLRHFNGIYAI-------------PNIRGGGELGEDWH---------- 604
++ I + + N ++ + GE +
Sbjct: 129 GLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYD 188
Query: 605 -------NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGL--LVGACLNQ 655
G + D +M + Y + I I G S G +V L++
Sbjct: 189 VVSRFLLELGWSWLGYTSYLD-MQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLDK 247
Query: 656 RPELYGAALILVGALDMLRFNKFTIAY-YSESEFGSPNNKTHFH-NLLSYSPLHNI--KV 711
A + L + + E+ PN+ H Y ++ +
Sbjct: 248 DI----YAFVYNDFLCQTQERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFNFPDVVASL 303
Query: 712 PPNNTQYPATLVLTGDHDDRVPPL 735
P + G D +
Sbjct: 304 APR-----PIIFTEGGLDRDFRLV 322
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 50.1 bits (119), Expect = 2e-06
Identities = 36/268 (13%), Positives = 76/268 (28%), Gaps = 62/268 (23%)
Query: 535 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIR 594
+G +P Y I + +I GG + + + +N + + ++
Sbjct: 143 EGELLPGYAIISEDKAQ----DTLIVVGGGDTSREDLFYMLGYSGWEHDYNVL--MVDLP 196
Query: 595 GGGE-LGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACL 653
G G+ + H D +AA +++ + I I G S GG +
Sbjct: 197 GQGKNPNQGLHFE----------VDARAAISAILDWYQAPTEKIAIAGFSGGGYFTAQAV 246
Query: 654 NQRPELYGAALI-----------------LVGALDMLRFNKFTIAYYSES---------- 686
+ + L +L++ + ++
Sbjct: 247 EKDKRIKAWIASTPIYDVAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAW 306
Query: 687 EFGSPNNKTHFHNLLSYSP---LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIAT 743
+FG + T + +L + + I VP +L L G +D S
Sbjct: 307 QFGQVDFITSVNEVLEQAQIVDYNKIDVP--------SLFLVGAGEDSELMRQSQVLYDN 358
Query: 744 LQEKIGSLPYQKNPLLLRVEQDAGHGQG 771
+++ + LR
Sbjct: 359 FKQR-------GIDVTLRKFSSESGADA 379
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 47.3 bits (112), Expect = 1e-05
Identities = 29/259 (11%), Positives = 64/259 (24%), Gaps = 49/259 (18%)
Query: 535 DGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHFNGIYAIPN 592
+ ++ ++ + +PV+I G + F L + +
Sbjct: 176 EKGKITAHLHLTNTD---KPHPVVIVSAGLDSLQTDMWRLFR----DHLAKHDIAMLTVD 228
Query: 593 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 652
+ G + + ++ QA + + Y + ++G GG +
Sbjct: 229 MPSVGY-------SSKYPLTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRL 281
Query: 653 LNQRPELYGAALILVGALD-----------MLRFNKFTIAYYSESEFGSPNNKTHFHNLL 701
E A +IL + M + +A + +
Sbjct: 282 SFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAW 341
Query: 702 SYSP-----LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKN 756
S KVP L ++ + D P +
Sbjct: 342 SLKVQGFLSSRKTKVP--------ILAMSLEGDPVSPYSDNQMVAFFSTYG--------- 384
Query: 757 PLLLRVEQDAGHGQGKALD 775
+ G ++LD
Sbjct: 385 KAKKISSKTITQGYEQSLD 403
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 45.6 bits (108), Expect = 3e-05
Identities = 36/272 (13%), Positives = 69/272 (25%), Gaps = 43/272 (15%)
Query: 520 EPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISR 577
E FQ +DG ++ + I G+ + L +
Sbjct: 15 ENLYFQGMATITLERDGLQLV-GTREEPF---GEIYDMAIIFHGFTANRNTSLLREIANS 70
Query: 578 CMFLRHFNGIYAI-PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKY 636
I ++ + G G+ + N N +D A Y+ + +
Sbjct: 71 L----RDENIASVRFDFNGHGDSDGKFENMTV----LNEIEDANAILNYVKTDPHVRN-- 120
Query: 637 ITIMGGSNGGLLVGACLNQRPELYGAALILVGALDM---LRFNKFTIAYYSESEFGSPNN 693
I ++G + GG++ P+L ++L A + Y+
Sbjct: 121 IYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLP 180
Query: 694 -------KTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 746
+ P ++ G D V P S K+ Q
Sbjct: 181 FKDLTLGGFYLRIAQQLPIYEVSA----QFTKP-VCLIHGTDDTVVSPNASKKYDQIYQN 235
Query: 747 KIGSLPYQKNPLLLRVEQDAGHGQGKALDIEL 778
L + + A H +
Sbjct: 236 ST-----------LHLIEGADHCFSDSYQKNA 256
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 45.2 bits (107), Expect = 4e-05
Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 24/155 (15%)
Query: 622 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA 681
AAE+ I+ P+ IT G S GG +V + L + ML+ N +
Sbjct: 116 AAEWHID-----PQQITPAGFSVGGHIVALYNDYWATRVATELNVTP--AMLKPNNVVLG 168
Query: 682 YYSESEFGSPNNKTHFHNLLS-----YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH 736
Y S + + ++ N+ T + T D VP +
Sbjct: 169 YPVISPLLGFPKDDATLATWTPTPNELAADQHV-----NSDNQPTFIWTTADDPIVPATN 223
Query: 737 SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 771
+ + L K P L V + HG
Sbjct: 224 TLAYATALATA-------KIPYELHVFKHGPHGLA 251
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 44.9 bits (106), Expect = 4e-05
Identities = 33/205 (16%), Positives = 59/205 (28%), Gaps = 37/205 (18%)
Query: 557 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRG-GGELGEDWHNAGRLLKKQNC 615
V+++ Y G + ++R + + +Y P G G D G
Sbjct: 26 VLLHAYTGSPNDMNF---MARALQRSGYG-VYV-PLFSGHGTVEPLDILTKGN------- 73
Query: 616 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 675
D + A + + K + + G S GG+ L P + + L
Sbjct: 74 PDIWWAESSAAVAHMTAKYAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHH 133
Query: 676 NKFTIAYYSESEFGSPNNKTHFHNLLSYSP----------------LHNIKVPPNNTQYP 719
Y+E +L+Y P L+ +K P
Sbjct: 134 LVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAADLNLVKQP------- 186
Query: 720 ATLVLTGDHDDRVPPLHSYKFIATL 744
T + D+ V +Y+ L
Sbjct: 187 -TFIGQAGQDELVDGRLAYQLRDAL 210
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 44.4 bits (105), Expect = 7e-05
Identities = 35/210 (16%), Positives = 62/210 (29%), Gaps = 42/210 (20%)
Query: 557 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCF 616
++++G+ G S+ P ++ + + P ++G G ED F
Sbjct: 44 LLVHGFTGTPHSMRP---LAEAYAKAGYT-VCL-PRLKGHGTHYEDMERTT--------F 90
Query: 617 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALI--LVGALDMLR 674
D+ A+ E + + I + G S GG L P++ G I V +
Sbjct: 91 HDWVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAA 150
Query: 675 FNKFTIAYYSESEFGSPNNKTHFHNLLSYSP-------------------LHNIKVPPNN 715
+ + K L+Y L I P
Sbjct: 151 GMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCP--- 207
Query: 716 TQYPATLVLTGDHDDRVPPLHSYKFIATLQ 745
L+ D D VPP ++ +
Sbjct: 208 -----ALIFVSDEDHVVPPGNADIIFQGIS 232
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 44.2 bits (104), Expect = 1e-04
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 14/139 (10%)
Query: 617 DDFQAAAEYMI-NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYG------AALILV-G 668
F ++ + TK +T G G L+ L + + ALI + G
Sbjct: 133 TQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCG 192
Query: 669 ALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDH 728
D+ + + N+ S SP+ V+ +H
Sbjct: 193 VYDLRELSNLESVNPKNILGLNE------RNIESVSPMLWEYTDVTVWNSTKIYVVAAEH 246
Query: 729 DDRVPPLHSYKFIATLQEK 747
D S + L++K
Sbjct: 247 DSTTFIEQSRHYADVLRKK 265
>3nuz_A Putative acetyl xylan esterase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; 2.30A {Bacteroides fragilis}
Length = 398
Score = 43.2 bits (101), Expect = 2e-04
Identities = 30/252 (11%), Positives = 63/252 (25%), Gaps = 54/252 (21%)
Query: 524 FQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFL 581
++ ++ F ++ N+ P I+ G GG + I+ +
Sbjct: 90 YRLEKWEFYPLPKCVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLND 147
Query: 582 RHFNGIYAI-------------PNIRGGGE-----------------LGEDWHNAGRLLK 611
R+ + + GE + G
Sbjct: 148 RYKDPKLTQALNFVKEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYL 207
Query: 612 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGL--LVGACLNQRPELYGAALILVGA 669
+ D +M +K+ + I + G S G +V L+ A +
Sbjct: 208 GYASYLD-MQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLDTSI----YAFVYNDF 262
Query: 670 L-DMLRFNKFTIAYYSESEFGSPNNKTHFH----NLLSYSPLHNIKVP-PNNTQYPATLV 723
L + PN+ H ++ + P P ++
Sbjct: 263 LCQTQERAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNFPDIVAALAPRP-------IIL 315
Query: 724 LTGDHDDRVPPL 735
G D + +
Sbjct: 316 TEGGLDRDLDLV 327
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 41.9 bits (98), Expect = 5e-04
Identities = 30/258 (11%), Positives = 67/258 (25%), Gaps = 36/258 (13%)
Query: 525 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF 584
+T R +G + ++ + + N ++I G+ + ++
Sbjct: 6 KTIAHVLRVNNGQELHVWETPPKENVPFKNNTILIAS--GFARRMDHFAGLAE-YLST-- 60
Query: 585 NGIYAI-PNIRG-GGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGG 642
NG + + G + ++ K I ++
Sbjct: 61 NGFHVFRYDSLHHVGLSSGSIDEFTM----TTGKNSLCTVYHWLQTKGTQN---IGLIAA 113
Query: 643 SNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNN--------- 693
S + ++ + + V L Y S PN+
Sbjct: 114 SLSARVAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLG 173
Query: 694 -KTHFHNLL--SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGS 750
+ + + L + NT P + T ++DD V Y +A +
Sbjct: 174 SEVFVRDCFEHHWDTLDSTLDKVANTSVP-LIAFTANNDDWVKQEEVYDMLAHI------ 226
Query: 751 LPYQKNPLLLRVEQDAGH 768
+ L + H
Sbjct: 227 ---RTGHCKLYSLLGSSH 241
>3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii}
Length = 208
Score = 40.8 bits (95), Expect = 8e-04
Identities = 27/223 (12%), Positives = 62/223 (27%), Gaps = 48/223 (21%)
Query: 526 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFN 585
+ + G M R + +I + + +G ++ + L
Sbjct: 6 NEDFLIQGPVGQLEVMI--TRPKGIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELG 63
Query: 586 GIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNG 645
N RG G + GR +D +A ++ + ++ G +
Sbjct: 64 LKTVRFNFRGVG------KSQGRYDNGVGEVEDLKAVLRWVEHHWSQDDIWLA---GFSF 114
Query: 646 GLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSP 705
G + A + ++ L+ + + ++
Sbjct: 115 GAYISAKVAYDQKVAQ----LISVAPPVFYE-------------------------GFAS 145
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI 748
L + P L++ GD D+ VP F+ + +
Sbjct: 146 LTQMASP--------WLIVQGDQDEVVPFEQVKAFVNQISSPV 180
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 40.0 bits (93), Expect = 0.002
Identities = 18/170 (10%), Positives = 44/170 (25%), Gaps = 28/170 (16%)
Query: 617 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN-----------------QRPEL 659
D + ++ +K I ++G S G + L ++
Sbjct: 98 YDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQI 155
Query: 660 YGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYP 719
+L G + Y + P+ + S + +
Sbjct: 156 VKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEE--EPSRVMPYVKKALSRFSI 213
Query: 720 ATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 769
++ D+ + + I+ LQ+ + L ++ H
Sbjct: 214 DMHLVHSYSDELLTLRQTNCLISCLQD-------YQLSFKLYLDDLGLHN 256
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 39.2 bits (92), Expect = 0.003
Identities = 24/183 (13%), Positives = 48/183 (26%), Gaps = 52/183 (28%)
Query: 617 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA------- 669
D+ K+ K IT++G S GG +V ++ ++ +
Sbjct: 68 DNVANFITNSEVTKHQKN--ITLIGYSMGGAIVLGVALKKLPNV-RKVVSLSGGARFDKL 124
Query: 670 ---LDMLRFNKFTIAYYSESEFGSPNN--KTHFHNLLSYSP------------------L 706
++ Y G +N + L P L
Sbjct: 125 DKDFMEKIYHNQLDNNYLLECIGGIDNPLSEKYFETLEKDPDIMINDLIACKLIDLVDNL 184
Query: 707 HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDA 766
NI +P + + +S +++++ +N L E
Sbjct: 185 KNIDIP--------VKAIVAKDELLTLVEYSEI----IKKEV------ENSELKIFE-TG 225
Query: 767 GHG 769
H
Sbjct: 226 KHF 228
>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading
enzyme, RICE, virulence, innate immune responses,
pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A
3h2k_A* 3h2h_A 3h2i_A
Length = 397
Score = 39.2 bits (90), Expect = 0.005
Identities = 21/167 (12%), Positives = 46/167 (27%), Gaps = 13/167 (7%)
Query: 516 VPEFEPTLFQTKQVYFRSKDGTRVPM----YIIHRVGALRNRRNPVIIYGYGGYGVSVLP 571
PE + + + + P ++ G + P++ +G+ +
Sbjct: 36 QPEQAKCNVRVAEFTYATIGVEGEPATASGVLLIPGGERCSGPYPLLGWGHPTEALRAQE 95
Query: 572 TFSISR-----CMFLRHFNG---IYAIPNIRGGGELGEDWHN-AGRLLKKQNCFDDFQAA 622
R + + + G G+ +H + D +AA
Sbjct: 96 QAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAYHPYLHSASEASATIDAMRAA 155
Query: 623 AEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 669
+ + K + + G S GG A + LV +
Sbjct: 156 RSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVAS 202
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 38.0 bits (88), Expect = 0.008
Identities = 24/194 (12%), Positives = 50/194 (25%), Gaps = 30/194 (15%)
Query: 556 PVIIYGYGGYGVSVLPTFSISRCMFL-RHF--NGI-YAIPNIRGGGELGEDWHNAGRLLK 611
+ ++ +GGY ++ F S L G A+P+ L + +
Sbjct: 64 GLFVFVHGGYWMA----FDKSSWSHLAVGALSKGWAVAMPSYE----LCPEVRISE---- 111
Query: 612 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 671
A + I + G S GG LV L+ + +
Sbjct: 112 ---ITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVP 165
Query: 672 MLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDR 731
+ + + + K ++ SP+ + V G +
Sbjct: 166 I---SPLSDLRPLLRTSMNEKFKMDADAAIAESPVE--MQNRYD---AKVTVWVGGAERP 217
Query: 732 VPPLHSYKFIATLQ 745
+ +
Sbjct: 218 AFLDQAIWLVEAWD 231
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Length = 223
Score = 36.4 bits (84), Expect = 0.018
Identities = 14/81 (17%), Positives = 24/81 (29%)
Query: 591 PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVG 650
++ E D A +++ + T+ + G S GG
Sbjct: 70 IDLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAAL 129
Query: 651 ACLNQRPELYGAALILVGALD 671
+RPE A + G D
Sbjct: 130 VAAAERPETVQAVVSRGGRPD 150
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 36.1 bits (83), Expect = 0.032
Identities = 33/221 (14%), Positives = 60/221 (27%), Gaps = 55/221 (24%)
Query: 536 GTRVPM---YIIHRVGALRNRRNPVI-IYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIP 591
PM H+ A + ++G GG L + +
Sbjct: 41 RKDTPMTKDSYFHKSRAGVAGAPLFVLLHGTGGDENQFFD---FGA-RLLPQATILSPVG 96
Query: 592 NIRGGG------ELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNG 645
++ G GE ++ L + DF A + +G SNG
Sbjct: 97 DVSEHGAARFFRRTGEGVYDMVDLERATGKMADFIKANREHYQ-----AGPVIGLGFSNG 151
Query: 646 GLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSP 705
++ L ++PEL+ AA+++ P P
Sbjct: 152 ANILANVLIEQPELFDAAVLM-----------------------HP-----------LIP 177
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 746
+ P L+ G+ D P + +L+
Sbjct: 178 FEPK-ISPAKPTRR-VLITAGERDPICPVQLTKALEESLKA 216
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 34.7 bits (80), Expect = 0.088
Identities = 32/219 (14%), Positives = 58/219 (26%), Gaps = 53/219 (24%)
Query: 557 VIIYGYGGYGVSVLPTFSISRCMFLRHFN----GIYAIPNIRGGGELGEDWHNAGRLLKK 612
++++G+ G V R +A P +G G E+ L
Sbjct: 20 LLLHGFTGNSADVRM--------LGRFLESKGYTCHA-PIYKGHGVPPEE-------LVH 63
Query: 613 QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRP----ELYGAALILVG 668
D +Q K + I + G S GG+ P A + +
Sbjct: 64 TGPDDWWQDVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKS 123
Query: 669 -----------ALDMLRFNKFTIAYYSESEFGSPNNKTH----FHNLLSYSP--LHNIKV 711
A + + + + L++ L I
Sbjct: 124 EETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYA 183
Query: 712 PPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGS 750
P T V+ HD+ + P + + +I S
Sbjct: 184 P--------TFVVQARHDEMINPDSANI----IYNEIES 210
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Vibrio parahaemolyticus rimd 2210633}
Length = 396
Score = 35.0 bits (79), Expect = 0.095
Identities = 21/166 (12%), Positives = 46/166 (27%), Gaps = 19/166 (11%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQY 274
+ +G AY G ++ + +T ++ EV+ + D +
Sbjct: 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-EEVMVMPPCSHLMSNFDGSLMVGDGC 302
Query: 275 CDINGTADGTETTAHMGQKIYYHVLGTEQDKDI------PVVEFPNGRSLGLHSEVTDCG 328
AD +Y + + + V + + H T
Sbjct: 303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPND 362
Query: 329 RYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHH 374
++ TS+ ++ D +P+ + HHH
Sbjct: 363 DG-VLFTSDFEGVPAIYIAD---VPESYKH--------LEHHHHHH 396
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 34.9 bits (81), Expect = 0.11
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFF 270
N K+ +GS NTLH+ + P+ + +P + T + +F
Sbjct: 212 VEYKNIKYIV-----TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262
Score = 31.4 bits (72), Expect = 1.2
Identities = 4/32 (12%), Positives = 10/32 (31%), Gaps = 6/32 (18%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ + +G+D + + D K
Sbjct: 128 LQFE-DNYVI-----TGADDKMIRVYDSINKK 153
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 34.2 bits (79), Expect = 0.11
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
L ++ P L++ G+ D VP H+ +
Sbjct: 192 LPRVQCP--------ALIVHGEKDPLVPRFHADFIHKHV 222
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 34.1 bits (79), Expect = 0.13
Identities = 11/64 (17%), Positives = 15/64 (23%), Gaps = 21/64 (32%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI-GSLPYQKNPLLLRVEQ 764
I+ P ++ D VP S L + S V
Sbjct: 196 ADRIRCP--------VQIICASDDLLVPTACSS----ELHAALPDS--------QKMVMP 235
Query: 765 DAGH 768
GH
Sbjct: 236 YGGH 239
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 34.2 bits (79), Expect = 0.14
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 253
S +G+ +A +++ D+ L
Sbjct: 337 RISQDGQKYA-----VAFMDGQVNVYDLKKLNSKSRSLY 370
Score = 29.9 bits (68), Expect = 3.2
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
++ +G H S N + +V +G
Sbjct: 156 KWNKDGTHII-----SMDVENVTILWNVISGT 182
Score = 29.5 bits (67), Expect = 4.8
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 7/44 (15%)
Query: 203 LSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
S DG+ + + + D+ K G + + +
Sbjct: 202 HSGDGSLGVDV-EWVDDDKFVI-----PGPK-GAIFVYQITEKT 238
Score = 29.2 bits (66), Expect = 6.6
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F+D K S SD TL I G
Sbjct: 254 EFNDTNKLLL-----SASDDGTLRIWHGGNGN 280
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 33.8 bits (78), Expect = 0.16
Identities = 17/65 (26%), Positives = 20/65 (30%), Gaps = 24/65 (36%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI--GSLPYQKNPLLLRVE 763
IKVP LV++G HD P L + I VE
Sbjct: 202 APGIKVP--------ALVISGTHDLAATPAQGR----ELAQAIAGARY----------VE 239
Query: 764 QDAGH 768
DA H
Sbjct: 240 LDASH 244
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.18
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 109 DREAIK--EQLLRMANYEKYSAPHFGVS 134
+++A+K + L++ Y SAP +
Sbjct: 18 EKQALKKLQASLKL--YADDSAPALAIK 43
Score = 31.8 bits (71), Expect = 0.43
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 143 DREAIK--EQLLRMANYEKYSAP 163
+++A+K + L++ Y SAP
Sbjct: 18 EKQALKKLQASLKL--YADDSAP 38
Score = 29.5 bits (65), Expect = 2.6
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 5/23 (21%)
Query: 202 KLSKDGTTALKLYAFSDNGKHFA 224
KL +LKLYA D+ A
Sbjct: 24 KL----QASLKLYA-DDSAPALA 41
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A
{Pyrococcus furiosus}
Length = 347
Score = 33.7 bits (77), Expect = 0.19
Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 21/155 (13%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPS-ISWTHDHKGFFY-- 271
S +GK A+ + + + + D++T + + K + W D +
Sbjct: 65 RISPDGKKIAFMRANEEKKVSEIWVADLETLS--SKKILEAKNIRSLEWNEDSRKLLIVG 122
Query: 272 ---------NQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHS 322
D+ D + + TE ++ I E P S
Sbjct: 123 FKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW--IFDTESEEVIEEFEKPR-----FSS 175
Query: 323 EVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 357
+ + ++ ++D++ DGK
Sbjct: 176 GIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE 210
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 33.6 bits (77), Expect = 0.25
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
N FA S + + V+ +
Sbjct: 118 TMIPNFDAFA-----VSSKDGQIIVLKVNHYQ 144
Score = 28.6 bits (64), Expect = 8.6
Identities = 16/164 (9%), Positives = 41/164 (25%), Gaps = 40/164 (24%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHD---HKGFFY 271
+ G+ + I D+ ++++ F + + +
Sbjct: 221 CIDEECCVLI-----LGTTRGIIDIWDIRFNV----LIRSWSFGDHAPITHVEVCQFYGK 271
Query: 272 NQYCDINGTADGT------ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSL------- 318
N + G++ G + ++ P + L
Sbjct: 272 NSVIVVGGSSKTFLTIWNFVK----GHCQ--YAFINSDEQPSMEHFLPIEKGLEELNFCG 325
Query: 319 -----GLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 357
L + + LL + ++ + F L+ L K
Sbjct: 326 IRSLNALSTISVSNDKILLTDEATSS----IVMFSLNELSSSKA 365
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 32.8 bits (75), Expect = 0.26
Identities = 28/240 (11%), Positives = 61/240 (25%), Gaps = 63/240 (26%)
Query: 541 MYIIHRVGALRNRRNPVI-IYGYGGYGVS-------VLPTFSISRCMFLR---HFNGIYA 589
+ + G R P++ ++ GG + P+ I + +R + G+
Sbjct: 5 TDYVFKAG--RKDLAPLLLLHSTGGDEHQLVEIAEMIAPSHPI---LSIRGRINEQGVNR 59
Query: 590 IPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLV 649
+RG G ++ + L ++ + D + K + +G SNG +
Sbjct: 60 YFKLRGLGGFTKENFDLESLDEETDWLTDEVSLL---AEKHDLDVHKMIAIGYSNGANVA 116
Query: 650 GACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNI 709
+ + + L +
Sbjct: 117 LNMFLRGKINFDKII-----------------------------------AFHGMQLEDF 141
Query: 710 KVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 769
+ + +D VP + L++ L E GH
Sbjct: 142 EQTVQLDDKH-VFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIY--------ESSLGHQ 192
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 33.4 bits (77), Expect = 0.29
Identities = 4/32 (12%), Positives = 8/32 (25%), Gaps = 3/32 (9%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
++ G+ N D+G
Sbjct: 123 SWDFEGRRLCVV---GEGRDNFGVFISWDSGN 151
Score = 30.3 bits (69), Expect = 2.6
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 16/62 (25%)
Query: 215 AFS--DNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFP---------SISWT 263
FS ++ SG + + + K+ V NVK ISW
Sbjct: 71 KFSPIKGSQYLC-----SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 125
Query: 264 HD 265
+
Sbjct: 126 FE 127
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 33.5 bits (77), Expect = 0.29
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 214 YAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
Y + + SG NT+ I D +T +
Sbjct: 137 YCLQYDDQKIV-----SGLRDNTIKIWDKNTLE 164
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 33.1 bits (76), Expect = 0.31
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 765
L +P TL++ GD D VP +S K E I N + ++
Sbjct: 217 LEKFNIP--------TLIIHGDSDATVPFEYSGKLTH---EAI------PNSKVALIK-G 258
Query: 766 AGHG 769
HG
Sbjct: 259 GPHG 262
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 33.0 bits (76), Expect = 0.33
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 737
L I+ P TLV+ G +D H
Sbjct: 204 LARIERP--------TLVIAGAYDTVTAASHG 227
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 33.0 bits (76), Expect = 0.33
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
+ I VP TLV+ GD D VP + K A L
Sbjct: 207 MAKIDVP--------TLVIHGDGDQIVPFETTGKVAAEL 237
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 32.7 bits (75), Expect = 0.35
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
L + +VP L+L G+H+ P + ++
Sbjct: 242 LRSARVP--------ILLLLGEHEVIYDPHSALHRASSF 272
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 33.0 bits (76), Expect = 0.36
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 213 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ G SGSD NTL + TGK
Sbjct: 122 ITCLQFCGNRIV-----SGSDDNTLKVWSAVTGK 150
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 32.5 bits (74), Expect = 0.40
Identities = 30/234 (12%), Positives = 60/234 (25%), Gaps = 60/234 (25%)
Query: 544 IHRVGALRNRRNPVII--YGYGGYGVSVLPTFSISRCMFLRHFNGI-YAIPNIRGGG--- 597
+R+ + +G G +++P ++R + + G
Sbjct: 19 PYRLLGAGKESRECLFLLHGSGVDETTLVP---LAR-RIAPTATLVAARGRIPQEDGFRW 74
Query: 598 --ELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQ 655
+ +L + F F A + + T +G SNG LV + +
Sbjct: 75 FERIDPTRFEQKSILAETAAFAAFTNEA---AKRHGLNLDHATFLGYSNGANLVSSLMLL 131
Query: 656 RPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNN 715
P + A LL P+ + +
Sbjct: 132 HPGIVRLAA-----------------------------------LLRPMPVLDHVPATDL 156
Query: 716 TQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 769
TL++ G D+ P + L + + +GH
Sbjct: 157 AGIR-TLIIAGAADETYGP-FVPALVTLLSRHGAEVDAR--------IIPSGHD 200
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 32.6 bits (75), Expect = 0.43
Identities = 5/32 (15%), Positives = 6/32 (18%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
AF A + D D
Sbjct: 280 AFHPVHGTLA-----TVGSDGRFSFWDKDART 306
Score = 30.3 bits (69), Expect = 2.3
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F+ NG FA S ++ + +
Sbjct: 322 CFNHNGNIFA-----YASSYDWSKGHEFYNPQ 348
Score = 30.3 bits (69), Expect = 2.4
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+SD+G + S T + D+ + +
Sbjct: 93 CWSDDGSKVF-----TASCDKTAKMWDLSSNQ 119
Score = 28.8 bits (65), Expect = 7.5
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F +G + S + N +KD++
Sbjct: 9 GFGTSGTS----MFGSATTDNHNPMKDIEVTS 36
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 32.8 bits (75), Expect = 0.43
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+F+D+G+ S L DV T +
Sbjct: 298 SFNDSGETLC-----SAGWDGKLRFWDVKTKE 324
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 33.3 bits (76), Expect = 0.44
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F +N + + L + TG+
Sbjct: 929 VFQENETMVL-----AVDNIRGLQLIAGKTGQ 955
Score = 32.9 bits (75), Expect = 0.55
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
FS +G+ A S TL + +TG+
Sbjct: 622 CFSQDGQRIA-----SCGADKTLQVFKAETGE 648
Score = 32.1 bits (73), Expect = 0.96
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F+ +GK S S+ + + + + TG
Sbjct: 1010 QFTADGKTLI-----SSSEDSVIQVWNWQTGD 1036
Score = 31.7 bits (72), Expect = 1.3
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A S + F+ S S T I D
Sbjct: 1092 AISSDATKFS-----STSADKTAKIWSFDLLS 1118
Score = 31.3 bits (71), Expect = 1.7
Identities = 4/32 (12%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
S + ++ A G + + I ++ +
Sbjct: 968 CLSPHLEYVA-----FGDEDGAIKIIELPNNR 994
Score = 30.2 bits (68), Expect = 3.5
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
FS + + A S S TL + DV +
Sbjct: 750 RFSPDDELLA-----SCSADGTLRLWDVRSAN 776
Score = 30.2 bits (68), Expect = 3.6
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
FS +G F + SD T+ + +
Sbjct: 889 MFSPDGSSFL-----TASDDQTIRVWETKKVC 915
Score = 29.8 bits (67), Expect = 4.5
Identities = 3/32 (9%), Positives = 8/32 (25%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
FS + + ++D+
Sbjct: 847 DFSPYDHLAV-----IALSQYCVELWNIDSRL 873
Score = 29.4 bits (66), Expect = 5.3
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
AFS + + A + S + I D TGK
Sbjct: 664 AFSSDDSYIA-----TCSADKKVKIWDSATGK 690
Score = 29.0 bits (65), Expect = 8.5
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
AFS +G A +G D + I +V G+
Sbjct: 1134 AFSLDGILLA-----TGDDNGEIRIWNVSDGQ 1160
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 32.6 bits (75), Expect = 0.45
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 190 LTGSTEVFLDPNKLSKDGTTALKLY----AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG 245
L+ + DP L+ + + LY FS +GK A +G++ + I D++
Sbjct: 101 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA-----TGAEDRLIRIWDIENR 155
Query: 246 K 246
K
Sbjct: 156 K 156
Score = 28.7 bits (65), Expect = 8.5
Identities = 6/38 (15%), Positives = 9/38 (23%), Gaps = 11/38 (28%)
Query: 215 AFSD------NGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A ++ FA +GS I
Sbjct: 359 AVANGSSLGPEYNVFA-----TGSGDCKARIWKYKKIA 391
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding,
oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium
barkeri}
Length = 425
Score = 32.9 bits (76), Expect = 0.45
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 18/71 (25%)
Query: 536 GTRVPMYIIHRVGALRN-----RRNPVIIYG----YGGYGVSVLPTFSISRCMFLRHFNG 586
R PM + + GA ++ + V ++G Y YG +V+ +R H G
Sbjct: 276 SKRHPMTMHCKTGATKDGRLQAVQ--VEMFGDTGAYASYGPAVI-----TRATV--HCMG 326
Query: 587 IYAIPNIRGGG 597
Y +PN+R
Sbjct: 327 PYVVPNVRVDA 337
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 32.3 bits (74), Expect = 0.52
Identities = 12/65 (18%), Positives = 16/65 (24%), Gaps = 21/65 (32%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI-GSLPYQKNPLLLRVEQ 764
NI P LV+ D PP + + +
Sbjct: 227 YRNIAAP--------VLVIGFADDVVTPPYLG----REVADALPNG--------RYLQIP 266
Query: 765 DAGHG 769
DAGH
Sbjct: 267 DAGHL 271
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 32.3 bits (74), Expect = 0.54
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 765
L +P TLV+ GD D VP + + A + I N L E
Sbjct: 208 LKKFDIP--------TLVVHGDDDQVVPIDATGRKSA---QII------PNAELKVYE-G 249
Query: 766 AGHG 769
+ HG
Sbjct: 250 SSHG 253
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 32.2 bits (74), Expect = 0.57
Identities = 13/65 (20%), Positives = 17/65 (26%), Gaps = 21/65 (32%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI-GSLPYQKNPLLLRVEQ 764
L N+ +P L L G D VP L + S +
Sbjct: 192 LQNVSMP--------FLRLYGYLDGLVPRKVV----PMLDKLWPHS--------ESYIFA 231
Query: 765 DAGHG 769
A H
Sbjct: 232 KAAHA 236
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-binding protein; 2.26A
{Neisseria gonorrhoeae}
Length = 291
Score = 32.4 bits (74), Expect = 0.57
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 44 EERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 74
ERAE V+F PY K K++ + +
Sbjct: 129 PERAEAVDFADPYMKVALGVVSPKNKPITDMAQLKDQTL 167
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 31.9 bits (73), Expect = 0.64
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 8/32 (25%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 737
+I +P TLV+ G +
Sbjct: 202 FASISIP--------TLVMDGGASPAWIRHTA 225
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase,
phosphoprotein, transferase; 2.40A {Geobacter
sulfurreducens}
Length = 234
Score = 31.8 bits (73), Expect = 0.64
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 15/55 (27%)
Query: 29 DASSSMSCESGPHPSEERAEKVEFTGPYPK------VRKDETV---EDDYHGMKI 74
D +S SE+RA +++FT P+ R+D +D G K+
Sbjct: 72 DVLQGIS------WSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKV 120
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 32.2 bits (74), Expect = 0.64
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
FS + +F + S + DV T +
Sbjct: 225 QFSPDLTYFI-----TSSRDTNSFLVDVSTLQ 251
Score = 31.4 bits (72), Expect = 1.2
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
FS G +F L + +++I +++
Sbjct: 122 EFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153
Score = 31.0 bits (71), Expect = 1.5
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A S G +A SG + + + +
Sbjct: 322 AISPQGTSYA-----SGGEDGFIRLHHFEKSY 348
Score = 29.5 bits (67), Expect = 4.3
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
K+ +GS ++ + DV G+
Sbjct: 81 DVDCFTKYCV-----TGSADYSIKLWDVSNGQ 107
Score = 28.7 bits (65), Expect = 8.7
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 253
+S GK+ +G + DV +Y + +
Sbjct: 182 GWSTKGKYII-----AGHKDGKISKYDVSNNYEYVDSID 215
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 31.7 bits (72), Expect = 0.69
Identities = 28/222 (12%), Positives = 51/222 (22%), Gaps = 61/222 (27%)
Query: 537 TRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHF--NGIYAIPN 592
+ M + + G + PV++ G GG + +LP
Sbjct: 22 SNAMMKHVFQKGK--DTSKPVLLLLHGTGGNELDLLP--------LAEIVDSEASVLSVR 71
Query: 593 --IRGGG------ELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSN 644
+ G L E + L+ + ++F A + I +G SN
Sbjct: 72 GNVLENGMPRFFRRLAEGIFDEEDLIFRTKELNEFLDEA---AKEYKFDRNNIVAIGYSN 128
Query: 645 GGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYS 704
G + + L A+ L
Sbjct: 129 GANIAASLLFHYENALKGAV-----------------------------------LHHPM 153
Query: 705 PLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 746
N + G +D S + L+
Sbjct: 154 VPRRGMQLANLAGKS-VFIAAGTNDPICSSAESEELKVLLEN 194
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 32.2 bits (74), Expect = 0.72
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 7/34 (20%)
Query: 215 AFSDNGKHFAYCLSKSGSDW--NTLHIKDVDTGK 246
++ K A + + H+ DTG
Sbjct: 110 SWDSESKRIA-----AVGEGRERFGHVFLFDTGT 138
Score = 31.4 bits (72), Expect = 1.3
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ G YC +G+ T+ + + +
Sbjct: 25 GNTPAGDKIQYC---NGTSVYTVPVGSLTDTE 53
Score = 31.0 bits (71), Expect = 1.7
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN 254
++S + A +GS N++ + +++ D+P ++K
Sbjct: 543 SWSPDNVRLA-----TGSLDNSVIVWNMNKPSDHPIIIKG 577
Score = 30.6 bits (70), Expect = 2.4
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+S +G A S S T+ I +V T K
Sbjct: 246 TWSPDGTKIA-----SASADKTIKIWNVATLK 272
Score = 30.6 bits (70), Expect = 2.5
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A S++ + A G + +H+ +
Sbjct: 455 ALSNDKQFVA-----VGGQDSKVHVYKLSGAS 481
Score = 30.2 bits (69), Expect = 2.7
Identities = 3/32 (9%), Positives = 8/32 (25%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ S S ++ + + G
Sbjct: 289 GIIWTKQALV-----SISANGFINFVNPELGS 315
Score = 29.9 bits (68), Expect = 4.5
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
++ +G FA S T+ + + G
Sbjct: 197 RYNPDGSLFA-----STGGDGTIVLYNGVDGT 223
Score = 29.5 bits (67), Expect = 4.6
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
AFS+NG + + V
Sbjct: 498 AFSNNGAFLV-----ATDQSRKVIPYSVANNF 524
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 31.8 bits (73), Expect = 0.79
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+S +G + G + I DV++
Sbjct: 141 KWSHDGSFLS-----VGLGNGLVDIYDVESQT 167
Score = 30.7 bits (70), Expect = 2.2
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A+ +G A SG + N + I D +
Sbjct: 224 AWRSDGLQLA-----SGGNDNVVQIWDARSSI 250
Score = 28.7 bits (65), Expect = 8.7
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 3/32 (9%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+S + K S G N L I +
Sbjct: 310 IWSPHSKEIM---STHGFPDNNLSIWSYSSSG 338
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 31.8 bits (73), Expect = 0.82
Identities = 12/64 (18%), Positives = 17/64 (26%), Gaps = 19/64 (29%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 765
L +I P L+ D P + E I N L ++
Sbjct: 214 LEDISTP--------ALIFQSAKDSLASPEVG----QYMAENI------PNSQLELIQ-A 254
Query: 766 AGHG 769
GH
Sbjct: 255 EGHC 258
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 31.5 bits (72), Expect = 0.82
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
+ + TL++ G D VP S + +
Sbjct: 209 IKTLPNE--------TLIIHGREDQVVPLSSSLRLGELI 239
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 31.7 bits (72), Expect = 0.88
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 8/33 (24%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSY 738
L + VP TLV+ +HD P H
Sbjct: 233 LREVTVP--------TLVIQAEHDPIAPAPHGK 257
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 31.5 bits (72), Expect = 0.92
Identities = 9/39 (23%), Positives = 10/39 (25%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
L + LV G D VP S L
Sbjct: 221 LGRLPHD--------VLVFHGRQDRIVPLDTSLYLTKHL 251
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 31.5 bits (72), Expect = 0.95
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
L IK T + G D VP H K + +
Sbjct: 222 LGEIKAK--------TFITWGRDDRFVPLDHGLKLLWNI 252
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 31.8 bits (73), Expect = 0.97
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F+ +G H + N + + + G+
Sbjct: 252 CFTSDGLHLL-----TVGTDNRMRLWNSSNGE 278
Score = 28.8 bits (65), Expect = 7.6
Identities = 5/32 (15%), Positives = 8/32 (25%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F N + SGS + +
Sbjct: 341 VFQSNFQELY-----SGSRDCNILAWVPSLYE 367
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine
transport system, protein structure initiative II(PSI
II); 2.06A {Legionella pneumophila subsp}
Length = 237
Score = 31.1 bits (71), Expect = 0.98
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 14/51 (27%)
Query: 32 SSMSCESGPHPSEERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 74
+SM ++ER + F+ PY + D + DD HG KI
Sbjct: 69 ASMI------ITDERKKHFIFSLPYMESNSQYITTVDSKISTFDDLHGKKI 113
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC
transport, cysteine uptake; 2.00A {Campylobacter jejuni}
SCOP: c.94.1.1
Length = 292
Score = 31.6 bits (72), Expect = 0.99
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 44 EERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 74
+RAE+V+F PY K V KD + +D +
Sbjct: 118 PQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTL 156
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 31.5 bits (72), Expect = 1.00
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
L I VP TLV+ GD D VP S A L
Sbjct: 209 LKKIDVP--------TLVVHGDADQVVPIEASGIASAAL 239
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 31.3 bits (72), Expect = 1.1
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A+S +G+ +G N + + V G
Sbjct: 313 AWSADGQTLF-----AGYTDNLVRVWQVTIGT 339
Score = 29.4 bits (67), Expect = 4.5
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
S +G A SG + D++ GK
Sbjct: 222 TVSPDGSLCA-----SGGKDGQAMLWDLNEGK 248
Score = 29.4 bits (67), Expect = 4.8
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
S +G+ SGS TL + D+ TG
Sbjct: 93 VISSDGQFAL-----SGSWDGTLRLWDLTTGT 119
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 31.9 bits (73), Expect = 1.1
Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 18/71 (25%)
Query: 536 GTRVPMYIIHRVGALRN-----RRNPVIIYG----YGGYGVSVLPTFSISRCMFLRHFNG 586
G R P + R A R Y +G + R +
Sbjct: 460 GKRSPFWTTMRYAADRQGKILAME--TDWSVDHGPYSEFGDLLT-----LRGAQ--YIGA 510
Query: 587 IYAIPNIRGGG 597
Y I NIRG G
Sbjct: 511 GYGIANIRGTG 521
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 31.1 bits (71), Expect = 1.3
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
L I+ P LV+ GD D VP +S A L
Sbjct: 212 LKGIQQP--------VLVMHGDDDQIVPYENSGVLSAKL 242
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 31.4 bits (72), Expect = 1.3
Identities = 1/32 (3%), Positives = 2/32 (6%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A +
Sbjct: 256 AAIPAQAGAD-----WTAAPAPAAGGWDTAAA 282
Score = 31.4 bits (72), Expect = 1.3
Identities = 0/32 (0%), Positives = 0/32 (0%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
Sbjct: 351 ----- 377
Score = 31.0 bits (71), Expect = 1.7
Identities = 0/32 (0%), Positives = 0/32 (0%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
Sbjct: 305 ----- 331
Score = 29.5 bits (67), Expect = 4.3
Identities = 0/33 (0%), Positives = 2/33 (6%), Gaps = 5/33 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD 247
+ +
Sbjct: 115 QLQTSFSEPR-----LLILTDPRTDHQPIKESA 142
Score = 29.5 bits (67), Expect = 5.0
Identities = 1/32 (3%), Positives = 5/32 (15%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ + + +K
Sbjct: 73 ENPQDIIVQS-----ARPYGQRAVLKFAQYTG 99
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 31.1 bits (71), Expect = 1.3
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 253
+ GK + + I DV + + + LK
Sbjct: 333 SVLSGGKAKCSQFC-TTGMDGGMSIWDVRSLESALKDLK 370
Score = 31.1 bits (71), Expect = 1.4
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFP------SISWTHD 265
++ N K FA GS + I + D+ V K++K P S+ W +
Sbjct: 103 RWAPNEKKFA-----VGSGSRVISICYFEQENDWW-VCKHIKKPIRSTVLSLDWHPN 153
Score = 30.7 bits (70), Expect = 2.0
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A++ + A + + +HI + K
Sbjct: 15 AWNKDRTQIA-----ICPNNHEVHIYEKSGNK 41
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 1.3
Identities = 28/203 (13%), Positives = 47/203 (23%), Gaps = 58/203 (28%)
Query: 277 IN--GTA----DGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRY 330
+ D E ++I+ + + G D
Sbjct: 1271 LKLEAEEIPSEDQNEFLLERTREIH---------NEAESQLRAAQQQWGNDFYKRDPRIA 1321
Query: 331 LLVSTSNN--TQGSDLHYFDLH--SLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIV 386
L DL H S + + + M H + G +I
Sbjct: 1322 PLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEM---MKHLGR---SEGNPVIG 1375
Query: 387 KTTKNA---PKG----------------KVV--TINLNNP---CEKNWKTLIPEDENRTL 422
K PKG ++ N +N E+ L P +T
Sbjct: 1376 VFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTD 1435
Query: 423 DVVAAVANNK---------LIVH 436
V A + ++VH
Sbjct: 1436 GVRAVSITSFGFGQKGGQAIVVH 1458
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Length = 777
Score = 31.5 bits (72), Expect = 1.4
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 24/71 (33%)
Query: 536 GTRVPMYIIHRVG--------ALRNRRNPVIIYG----YGGYGVSVLPTFSISRCMFLRH 583
G R I +R+G + V R M H
Sbjct: 267 GKRHDFRIRYRIGADASGKLLGADFV-----HLARCGWSADLSLPVCD-----RAML--H 314
Query: 584 FNGIYAIPNIR 594
+G Y +P +R
Sbjct: 315 ADGSYFVPALR 325
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 31.2 bits (71), Expect = 1.4
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 253
A S ++ A +G LHI +++ + +K
Sbjct: 75 ATSLQQRYLA-----TGDFGGNLHIWNLEAPEMPVYSVK 108
Score = 29.6 bits (67), Expect = 4.3
Identities = 4/32 (12%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A++ + +G D + + D+
Sbjct: 175 AYNQEERVVC-----AGYDNGDIKLFDLRNMA 201
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 31.5 bits (72), Expect = 1.4
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 24/74 (32%)
Query: 536 GTRVPMYIIHRVG--------ALRNRRNPVIIYG----YGGYGVSVLPTFSISRCMFLRH 583
G R P + + A+ Y +G + R
Sbjct: 458 GKRSPWEMNVKFAAKKDGTLLAME-----SDWLVDHGPYSEFGDLLT-----LRGAQ--F 505
Query: 584 FNGIYAIPNIRGGG 597
Y IPNIRG G
Sbjct: 506 IGAGYNIPNIRGLG 519
>4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural
genomics, joint cente structural genomics, JCSG; HET:
MSE; 1.15A {Legionella pneumophila subsp}
Length = 377
Score = 31.0 bits (69), Expect = 1.4
Identities = 23/201 (11%), Positives = 54/201 (26%), Gaps = 26/201 (12%)
Query: 486 LQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLF---QTKQVYFRSKDGTRVPM- 541
L+ + + + + I + + P T+ Q ++ ++++
Sbjct: 3 LEHEKLVNYIALGEFSRE---TAEIALKKMPPLDTLTVHYDLQLYKINYKTQSPDGNLTI 59
Query: 542 ---YIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF---NG-IYAIPNIR 594
+ + + +G V + ++L + G + +P+
Sbjct: 60 ASGLVAMPIHPVGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYL 119
Query: 595 GGGELGEDWH------NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLL 648
G G+ H + D AA E Y + + G S GG
Sbjct: 120 GLGDNELTLHPYVQAETLAS-----SSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFS 174
Query: 649 VGACLNQRPELYGAALILVGA 669
+ L +
Sbjct: 175 TIVMFEMLAK-EYPDLPVSAV 194
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 30.8 bits (70), Expect = 1.4
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
+ ++VP TLV+ G D VP +YKF+ +
Sbjct: 218 IRKVQVP--------TLVVQGKDDKVVPVETAYKFLDLI 248
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 31.0 bits (70), Expect = 1.4
Identities = 18/184 (9%), Positives = 39/184 (21%), Gaps = 43/184 (23%)
Query: 616 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLL-VGACLNQRPE----LYGAALIL---- 666
+D A+ + + + I G S+G L + ++ + YG + I
Sbjct: 79 IEDVYASFDAI--QSQYSNCPIFTFGRSSGAYLSLLIARDRDIDGVIDFYGYSRINTEPF 136
Query: 667 ------VGALDMLRFNKFTIAYYSESEFGSPNNKTHF---------HNLLSYSPLHNIKV 711
+ S + F ++ + +
Sbjct: 137 KTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTD 196
Query: 712 PP------NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 765
P + + D VP S + +
Sbjct: 197 SKYNIAPDELKTLPPVFIAHCNGDYDVPVEESEHIMNHV-----------PHSTFERVNK 245
Query: 766 AGHG 769
H
Sbjct: 246 NEHD 249
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 30.8 bits (70), Expect = 1.5
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKF 740
L +K+P + + G HD + P + S +
Sbjct: 217 LKFVKIP--------SFIYCGKHDVQCPYIFSCEI 243
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 30.9 bits (71), Expect = 1.5
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
AFS + ++ A +G+ ++I V++GK
Sbjct: 129 AFSPDSQYLA-----TGTHVGKVNIFGVESGK 155
Score = 30.5 bits (70), Expect = 2.1
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
S A S S + + D++ GK
Sbjct: 87 DISHTLPIAA-----SSSLDAHIRLWDLENGK 113
Score = 29.7 bits (68), Expect = 3.5
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
AF + HF S S ++ + DV T
Sbjct: 255 AFCPDDTHFV-----SSSSDKSVKVWDVGTRT 281
Score = 29.4 bits (67), Expect = 4.3
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A+ N K + + +GS + + + +
Sbjct: 39 AWGTNKKENSETVV-TGSLDDLVKVWKWRDER 69
Score = 29.4 bits (67), Expect = 4.4
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
FS + + + SD + I DV
Sbjct: 213 TFSPDSQLLV-----TASDDGYIKIYDVQHAN 239
Score = 29.4 bits (67), Expect = 5.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A+S +GK+ A SG+ ++I D+ TGK
Sbjct: 171 AYSPDGKYLA-----SGAIDGIINIFDIATGK 197
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella
enterica subsp}
Length = 229
Score = 30.7 bits (70), Expect = 1.6
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 14/51 (27%)
Query: 32 SSMSCESGPHPSEERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 74
+ M + +R ++V F+ PY + V + D G K+
Sbjct: 71 AGMD------MTPKREQQVSFSQPYYEGLSAVVVTRKGAYHTFADLKGKKV 115
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 30.7 bits (70), Expect = 1.7
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 12/59 (20%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLK----NVKFPSISWTHDHKG 268
G A + S ++ I DV G L+ V ++W H G
Sbjct: 20 QMDYYGTRLA-----TCSSDRSVKIFDVRNGGQILIADLRGHEGPVW--QVAWAHPMYG 71
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.12A {Shewanella oneidensis}
Length = 331
Score = 30.8 bits (69), Expect = 1.7
Identities = 18/147 (12%), Positives = 36/147 (24%), Gaps = 29/147 (19%)
Query: 626 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 685
I + ++G S GGL+ L L+ A L L
Sbjct: 128 SIESQLRTNGINVLVGHSFGGLVAMEALRTDRPLFSAYLAL------------------- 168
Query: 686 SEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS---YKFIA 742
+ + L+ +K Q + ++ S
Sbjct: 169 ----DTSLWFDSPHYLTLLEERVVKGDFKQKQL---FMAIANNPLSPGFGVSSYHKDLNL 221
Query: 743 TLQEKIGSLPYQKNPLLLRVEQDAGHG 769
+K+ L + + + + H
Sbjct: 222 AFADKLTKLAPKGLGFMAKYYPEETHQ 248
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 31.1 bits (71), Expect = 1.7
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 536 GTRVPMYIIHRVGALRN---RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPN 592
G R P ++VG ++ V Y G + + + R +F H + Y IPN
Sbjct: 267 GGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSI-MERALF--HMDNCYKIPN 323
Query: 593 IRGGG 597
IRG G
Sbjct: 324 IRGTG 328
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding
protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP:
c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A*
1hpb_P*
Length = 239
Score = 30.3 bits (69), Expect = 1.8
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 12/48 (25%)
Query: 32 SSMSCESGPHPSEERAEKVEFTGPYPK------VRKDETVEDDYHGMK 73
SS+S +++R +++ F+ K ++ +K
Sbjct: 69 SSLS------ITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLESLK 110
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein;
protein structure initiative II(PSI II), nysgxrc; 1.90A
{Streptococcus thermophilus lmg 18311}
Length = 268
Score = 30.4 bits (69), Expect = 1.8
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 44 EERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 74
+ER + +FT PY +K ++ G +
Sbjct: 92 DERKQSADFTEPYMVNEQVLVTKKSSGIDSVAGMAGKTL 130
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 30.6 bits (70), Expect = 1.8
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 14/58 (24%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-------NVKFPSISWTHD 265
A+S++G + A + S ++ I + D + E + +VK + W
Sbjct: 114 AWSNDGYYLA-----TCSRDKSVWIWETDESGEEYECISVLQEHSQDVK--HVIWHPS 164
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 30.6 bits (70), Expect = 1.9
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ +G FA SGSD T + D+ +
Sbjct: 247 RYYPSGDAFA-----SGSDDATCRLYDLRADR 273
Score = 29.8 bits (68), Expect = 3.1
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
FS +G+ +G + T+++ DV G
Sbjct: 291 DFSLSGRLLF-----AGYNDYTINVWDVLKGS 317
Score = 29.4 bits (67), Expect = 4.1
Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ + + S S + + D T
Sbjct: 71 DWCKDKRRIV-----SSSQDGKVIVWDSFTTN 97
Score = 28.7 bits (65), Expect = 7.5
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+F+++ + S T + DV++G+
Sbjct: 161 SFTNSDMQIL-----TASGDGTCALWDVESGQ 187
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand
binding domain, transport protein; HET: GLU; 2.10A
{Nostoc punctiforme}
Length = 228
Score = 30.3 bits (69), Expect = 1.9
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 44 EERAEKVEFTGPYPK------VRKDETVEDDYHGMK 73
ER + +F+ P VR E+ D +
Sbjct: 73 AEREQNFDFSLPIFASGLQIMVRNLESGTGDIRSID 108
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 30.4 bits (69), Expect = 1.9
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
L IK TL++ G +D VP + ++ +
Sbjct: 225 LAEIKAQ--------TLIVWGRNDRFVPMDAGLRLLSGI 255
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 30.8 bits (70), Expect = 2.1
Identities = 4/32 (12%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ + + + T+ + D ++GK
Sbjct: 362 GRYPDPNFKSC----TPYELRTIDVFDGNSGK 389
>3tql_A Arginine-binding protein; transport and binding proteins, transport
protein; HET: MSE ARG; 1.59A {Coxiella burnetii}
Length = 227
Score = 30.3 bits (69), Expect = 2.1
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 15/52 (28%)
Query: 32 SSMSCESGPHPSEERAEKVEFTGPYPK------VRKDETVE---DDYHGMKI 74
M+ + R ++V+FT PY K+ + G I
Sbjct: 67 GGMN------ITTARQKEVDFTDPYYTNSVSFIADKNTPLTLSKQGLKGKII 112
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 30.6 bits (70), Expect = 2.2
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 253
A++ +G + A G N I ++ T + V +
Sbjct: 104 AYAPSGNYVA-----CGGLDNICSIYNLKTREGNVRVSR 137
Score = 29.8 bits (68), Expect = 3.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F NG FA +GSD T + D+ +
Sbjct: 233 CFFPNGNAFA-----TGSDDATCRLFDLRADQ 259
Score = 29.8 bits (68), Expect = 3.3
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ + + S S L I D T
Sbjct: 62 HWGTDSRLLL-----SASQDGKLIIWDSYTTN 88
Score = 29.8 bits (68), Expect = 3.5
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+FS +G+ +G D ++ D
Sbjct: 277 SFSKSGRLLL-----AGYDDFNCNVWDALKAD 303
Score = 29.4 bits (67), Expect = 4.9
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ + + + F SG+ + + DV G
Sbjct: 191 SLAPDTRLFV-----SGACDASAKLWDVREGM 217
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 30.3 bits (69), Expect = 2.2
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 21/65 (32%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI-GSLPYQKNPLLLRVEQ 764
L + VP +L+L D P + + + S L+ +
Sbjct: 206 LSKVTVP--------SLILQCADDIIAPATVG----KYMHQHLPYS--------SLKQME 245
Query: 765 DAGHG 769
GH
Sbjct: 246 ARGHC 250
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 30.5 bits (68), Expect = 2.3
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 10/58 (17%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHI----KDVDTGKDYPEVLKNVKFPSISWTHDHKG 268
F+DNG D T+ KDV T + K ++++ D G
Sbjct: 221 KFADNGYWMV-----VECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG 272
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron
aquisition, structural genomics, PSI-2, protein
structure initiative; HET: CIT; 1.80A {Shigella flexneri
2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A*
3c8h_A 3mga_A*
Length = 403
Score = 30.3 bits (68), Expect = 2.6
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 626 MINKKY---TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 670
++ + + G S GGL PE +G L G+
Sbjct: 264 LVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSY 311
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 30.2 bits (68), Expect = 2.8
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 8/37 (21%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIA 742
+ I VP L+L G D +P ++ +
Sbjct: 214 IPRIDVP--------ALILHGTGDRTLPIENTARVFH 242
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 30.2 bits (69), Expect = 2.8
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ +G + S S TL + DV TG+
Sbjct: 72 TLTADGAYAL-----SASWDKTLRLWDVATGE 98
Score = 29.0 bits (66), Expect = 6.7
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG 245
A+S +G+ +G N + + V T
Sbjct: 293 AWSADGQTLF-----AGYTDNVIRVWQVMTA 318
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 29.9 bits (66), Expect = 2.9
Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 23/166 (13%)
Query: 520 EPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCM 579
E L ++ + DG VP + +++ G+GG + +
Sbjct: 24 ERKLSVQERGFSLEVDGRTVPGVYWSPAEG---SSDRLVLLGHGGTTHKKVEYIEQVAKL 80
Query: 580 FLRHFNGIYAI-PNIRGGGE-----------LGEDWHNAGRLLKKQNCFD----DFQAAA 623
+ GI A+ + G GE R+ + D+ AA
Sbjct: 81 LVGR--GISAMAIDGPGHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAAL 138
Query: 624 EYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 669
+++ ++ +P G S G ++ + A L L+G
Sbjct: 139 DFIEAEEGPRP--TGWWGLSMGTMMGLPVTASDKRIKVALLGLMGV 182
>4eq9_A ABC transporter substrate-binding protein-amino A transport;
structural genomics, niaid; HET: GSH; 1.40A
{Streptococcus pneumoniae}
Length = 246
Score = 30.0 bits (68), Expect = 3.0
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 43 SEERAEKVEFTGPYPK------VRKDET 64
++ERAEK + P + V+KD++
Sbjct: 78 TKERAEKYLYAAPIAQNPNVLVVKKDDS 105
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 30.3 bits (69), Expect = 3.0
Identities = 3/32 (9%), Positives = 8/32 (25%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ F G+ + + D +
Sbjct: 104 TAKLQMRRFI-----LGTTEGDIKVLDSNFNL 130
Score = 29.5 bits (67), Expect = 5.2
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 204 SKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
S L F GK+ +G + + +V + +
Sbjct: 246 STSKKNNL---EFGTYGKYVI-----AGHVSGVITVHNVFSKE 280
Score = 29.1 bits (66), Expect = 6.2
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F +G+ S S L I V G
Sbjct: 146 KFFPSGEALI-----SSSQDMQLKIWSVKDGS 172
Score = 28.7 bits (65), Expect = 7.2
Identities = 3/32 (9%), Positives = 5/32 (15%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F G H + +
Sbjct: 63 TFEKVGSHLY-----KARLDGHDFLFNTIIRD 89
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 29.7 bits (68), Expect = 3.5
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A+S + S SD TL I DV +GK
Sbjct: 72 AWSSDSNLLV-----SASDDKTLKIWDVSSGK 98
Score = 29.7 bits (68), Expect = 3.7
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
FS NGK+ + + NTL + D GK
Sbjct: 199 KFSPNGKYIL-----AATLDNTLKLWDYSKGK 225
Score = 29.7 bits (68), Expect = 3.9
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
FS NG+ A S S + I GK
Sbjct: 30 KFSPNGEWLA-----SSSADKLIKIWGAYDGK 56
Score = 28.2 bits (64), Expect = 9.4
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F+ SGS ++ I DV TGK
Sbjct: 114 NFNPQSNLIV-----SGSFDESVRIWDVKTGK 140
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 29.6 bits (67), Expect = 3.6
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 9/39 (23%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
L IKVP TL+L G++ D + K +
Sbjct: 203 LKEIKVP--------TLILAGEY-DEKFVQIAKKMANLI 232
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 29.9 bits (68), Expect = 3.6
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+F +GK A S S T+ + D +
Sbjct: 157 SFDHSGKLLA-----SCSADMTIKLWDFQGFE 183
Score = 29.5 bits (67), Expect = 4.2
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ +G A S S+ T+ + V T +
Sbjct: 241 RPNQDGTLIA-----SCSNDQTVRVWVVATKE 267
Score = 29.5 bits (67), Expect = 4.5
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F GK S +D TL + D +
Sbjct: 345 LFHSGGKFIL-----SCADDKTLRVWDYKNKR 371
Score = 29.1 bits (66), Expect = 5.4
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F S S+ T+ + D +TG
Sbjct: 115 IFHPVFSVMV-----SASEDATIKVWDYETGD 141
Score = 28.7 bits (65), Expect = 8.3
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ NG H S S T+ + +V TG
Sbjct: 199 SIMPNGDHIV-----SASRDKTIKMWEVQTGY 225
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 29.7 bits (66), Expect = 3.8
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 617 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 667
D A + + P ++G S GG AC +P L+ LIL+
Sbjct: 119 RDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLF-HLLILI 168
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 29.6 bits (67), Expect = 3.8
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
++ ++ P L++ G D P + + T+
Sbjct: 226 VYRLRQP--------VLLIWGREDRVNPLDGALVALKTI 256
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER
bacterium, transport protein; HET: LYS; 1.79A
{Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Length = 272
Score = 29.6 bits (67), Expect = 3.9
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 44 EERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 74
+ER + +F+ PY + V++ V+ D G I
Sbjct: 112 DERKQSYDFSDPYFEATQVILVKQGSPVKNALDLKGKTI 150
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 29.5 bits (67), Expect = 3.9
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A++ GK +G + +T
Sbjct: 316 AWNALGKKLF-----AGFTDGVIRTFSFETSA 342
Score = 29.5 bits (67), Expect = 4.2
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A S S S TL + D+ TG
Sbjct: 83 ALSQENCFAI-----SSSWDKTLRLWDLRTGT 109
Score = 28.3 bits (64), Expect = 8.8
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
+ S NGK+ A +G L I D+
Sbjct: 220 SISPNGKYIA-----TGGKDKKLLIWDILNLT 246
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 29.7 bits (67), Expect = 3.9
Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 18/69 (26%)
Query: 341 GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE---IIANNGPELIVKTTKNAPKGKV 397
G+D + GK L + G HE ++ + G +
Sbjct: 40 GADREIVNGKLTLSTLPKGKDFL---VLG----HEAIGVVEESYHGFSQ--------GDL 84
Query: 398 VTINLNNPC 406
V C
Sbjct: 85 VMPVNRRGC 93
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 29.3 bits (66), Expect = 4.0
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 21/73 (28%)
Query: 696 HFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQK 755
L L + P VL G+ D P + ++ +
Sbjct: 204 GLWRLDYTPYLTPERRP--------LYVLVGERDGTSYPYA-----EEVASRLRA----- 245
Query: 756 NPLLLRVEQDAGH 768
+RV +AGH
Sbjct: 246 ---PIRVLPEAGH 255
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 29.7 bits (67), Expect = 4.2
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 5/33 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD 247
+S N FA GS + + + D
Sbjct: 107 RWSPNEDKFA-----VGSGARVISVCYFEQEND 134
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic,
transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae}
PDB: 3g41_A* 3n26_A*
Length = 268
Score = 29.2 bits (66), Expect = 4.4
Identities = 6/53 (11%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 32 SSMSCESGPHPSEERAEKVEFTGPYPK------VRKDETVE----DDYHGMKI 74
+ MS + R +++ Y V ++E +
Sbjct: 96 AGMS------ITPSRQKEIALLPYYGDEVQELMVVSKRSLETPVLPLTQYSSV 142
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic,
transport protein; 1.90A {Salmonella enterica} PDB:
3r39_A 4f3s_A
Length = 259
Score = 29.2 bits (66), Expect = 4.6
Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 16/53 (30%)
Query: 32 SSMSCESGPHPSEERAEKVEFTGPYPK------VRKDETVE----DDYHGMKI 74
S +S +++R + ++F+ PY + + ++ + I
Sbjct: 94 SGIS------ITDKRKKVIDFSEPYYINSFYLVSMANHKITLNNLNELNKYSI 140
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 28.7 bits (64), Expect = 4.6
Identities = 6/51 (11%), Positives = 12/51 (23%), Gaps = 1/51 (1%)
Query: 696 HFHNLLSYSPLHNIKVPPNNTQYPA-TLVLTGDHDDRVPPLHSYKFIATLQ 745
L P + P ++ HD+ +P +
Sbjct: 96 PTRALFLMVPPTKMGPLPALDAAAVPISIVHAWHDELIPAADVIAWAQARS 146
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 29.6 bits (67), Expect = 4.7
Identities = 7/57 (12%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFP----SISWTHDHK 267
+ + +G A + S ++L + + + + +++ + W+H++K
Sbjct: 30 SGTVSGTVDA-----NFSTDSSLELWSLLAADS-EKPIASLQVDSKFNDLDWSHNNK 80
Score = 28.8 bits (65), Expect = 7.0
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 253
+S N K A D +L + + + +
Sbjct: 74 DWSHNNKIIA-----GALDNGSLELYSTNEANNAINSMA 107
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 29.4 bits (67), Expect = 4.8
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F+ GK F S N L+ G
Sbjct: 272 KFAYCGKWFV-----STGKDNLLNAWRTPYGA 298
Score = 29.4 bits (67), Expect = 4.9
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP 249
+ G+ A G + + + + V+ Y
Sbjct: 231 GYCPTGEWLA-----VGMESSNVEVLHVNKPDKYQ 260
Score = 28.2 bits (64), Expect = 10.0
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
S++G +G NT+ D+ G+
Sbjct: 190 DISNDGTKLW-----TGGLDNTVRSWDLREGR 216
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 4.8
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 34 MSCESGPHPSEERAEKVEFTG--PYPKVRKDETVEDDYHG 71
M+ ES + R + P KV + VE G
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEG 41
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 29.3 bits (66), Expect = 4.9
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 9/32 (28%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 737
L ++ P LV+ G+H D P
Sbjct: 259 LPDVTAP--------VLVIAGEH-DEATPKTW 281
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 28.9 bits (65), Expect = 5.4
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 8/40 (20%)
Query: 705 PLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
N + P ++ G +D V K I
Sbjct: 203 KNINYQFP--------FKIMVGRNDQVVGYQEQLKLINHN 234
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
signaling protein; 2.04A {Bordetella pertussis} PDB:
3mpl_A
Length = 267
Score = 28.9 bits (65), Expect = 5.6
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 15/55 (27%)
Query: 29 DASSSMSCESGPHPSEERAEKVEFTGPYPK------VRKDETV---EDDYHGMKI 74
D + ++ + R + F+ PY + R+D D G +
Sbjct: 94 DMAGALF------VNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTV 142
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 29.2 bits (65), Expect = 5.9
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD 247
+S +G A SD TLH+ ++ +D
Sbjct: 247 KWSTDGSKLA-----VVSDKWTLHVFEIFNDQD 274
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 28.9 bits (65), Expect = 5.9
Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
++ P L++ G+ V K
Sbjct: 251 YRDVTKP--------VLIVRGESSKLVSAAALAKTSRLR 281
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 29.1 bits (66), Expect = 5.9
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 19/72 (26%)
Query: 341 GSDLHYFDLHSLPDGKISGKFPLKT-VIPGMDHHHE---IIANNGPELIVKTTKNAPKGK 396
GSD+HY++ G+I G F +K ++ G HE + G VK K G
Sbjct: 45 GSDVHYWE-----YGRI-GNFIVKKPMVLG----HEASGTVEKVGSS--VKHLK---PGD 89
Query: 397 VVTINLNNPCEK 408
V I P E
Sbjct: 90 RVAIEPGAPREN 101
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 29.1 bits (66), Expect = 6.3
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 13/57 (22%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP--EVLK----NVKFPSISWTHD 265
A++ +G A + S ++ + +VD +Y VL +VK + W
Sbjct: 112 AWAPSGNLLA-----TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK--HVVWHPS 161
Score = 28.3 bits (64), Expect = 9.9
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
A++ G A S + I +
Sbjct: 23 AWNPAGTLLA-----SCGGDRRIRIWGTEGDS 49
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 28.8 bits (65), Expect = 6.5
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 765
+ I VP L+L G D +P ++ + LP + + VE
Sbjct: 213 IPRIDVP--------ALILHGTGDRTLPIENTARVFHKA------LP---SAEYVEVE-G 254
Query: 766 AGHG 769
A HG
Sbjct: 255 APHG 258
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB;
SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A
{Bacillus subtilis}
Length = 271
Score = 28.8 bits (65), Expect = 6.7
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 42 PSEERAEKVEFTGPYPK------VRKDETVE----DDYHGMKI 74
+++R EK F+ PY VRKD+ D G K
Sbjct: 93 VTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKKA 135
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 29.3 bits (66), Expect = 6.8
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
S +G+ SGS L + D+ G
Sbjct: 437 VLSSDGQFAL-----SGSWDGELRLWDLAAGV 463
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate,
transport, ABC transport, virulence factor, receptor;
1.49A {Campylobacter jejuni}
Length = 259
Score = 28.5 bits (64), Expect = 6.9
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 43 SEERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 74
+ ER F+ PY + V K++ + D G I
Sbjct: 112 TPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANI 151
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-BIND protein; HET: CYS GOL;
1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Length = 283
Score = 28.9 bits (65), Expect = 6.9
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 8/40 (20%)
Query: 43 SEERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 74
S ER + + PY D ++ D G+K
Sbjct: 128 SPERQATFDKSEPYSWSGAVLVAHNDSNIKSIADIKGVKT 167
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 28.9 bits (65), Expect = 7.3
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 215 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 246
F GSD + + + +TG+
Sbjct: 62 KFIARKNWII-----VGSDDFRIRVFNYNTGE 88
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product
complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia
pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Length = 179
Score = 28.4 bits (63), Expect = 7.4
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 142 TDREAIKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLD 199
D + EQL+ ++ +++ Y + + L I V R + S
Sbjct: 18 MDLTTLHEQLVAQ-KATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWI 74
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic
protein, arginine protein binding, transport protein;
1.92A {Chlamydia trachomatis}
Length = 242
Score = 28.4 bits (64), Expect = 7.4
Identities = 4/52 (7%), Positives = 12/52 (23%), Gaps = 15/52 (28%)
Query: 32 SSMSCESGPHPSEERAEKVEFTGPYPK------VRKDETV---EDDYHGMKI 74
+ MS + R +++ Y + + +
Sbjct: 76 TGMS------ITPSRLKEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSV 121
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 28.3 bits (64), Expect = 7.8
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 199 DPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD 243
++K AL Y N K G +H +D D
Sbjct: 164 KMGIMNKGVIYALWDYE-PQNDDELPM---KEGDCMTIIHREDED 204
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 28.4 bits (64), Expect = 9.0
Identities = 12/39 (30%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 706 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 744
L I VP LV G D VP + A L
Sbjct: 211 LKRIDVP--------VLVAHGTDDQVVPYADAAPKSAEL 241
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural
genomics, transporter, PSI-2, protein structure
initiative; HET: LYS; 2.00A {Silicibacter pomeroyi}
Length = 232
Score = 28.3 bits (64), Expect = 9.3
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 6/25 (24%)
Query: 32 SSMSCESGPHPSEERAEKVEFTGPY 56
+ MS ++ER E ++FT Y
Sbjct: 70 AGMS------ITDERDEVIDFTQNY 88
>2vha_A Periplasmic binding transport protein; periplasmic binding protein,
ligand binding, ultrahigh resolution; HET: GLU; 1.00A
{Shigella flexneri} PDB: 2ia4_A*
Length = 287
Score = 28.1 bits (63), Expect = 9.7
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 8/40 (20%)
Query: 43 SEERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 74
+ ER ++ F+ +K ++ D G +
Sbjct: 94 NVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFADLKGKAV 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.418
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,382,287
Number of extensions: 764441
Number of successful extensions: 2298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2174
Number of HSP's successfully gapped: 261
Length of query: 783
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 682
Effective length of database: 3,881,772
Effective search space: 2647368504
Effective search space used: 2647368504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)