BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2523
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Non-Canonical Internalization Peptide
Vedyeqglsg
pdb|2VGL|M Chain M, Ap2 Clathrin Adaptor Core
pdb|2JKR|M Chain M, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|U Chain U, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|M Chain M, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|U Chain U, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 435
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/505 (74%), Positives = 400/505 (79%), Gaps = 73/505 (14%)
Query: 1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 60
MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFH+KR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 61 ANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEE 120
+NIWLAAVTKQNVNAAMVFEFL K DVM +YF GKISEE
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYF---------------------GKISEE 99
Query: 121 NIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKXXXXXXXXXXXEILDFG 180
NIKNNFVLIYELLD EILDFG
Sbjct: 100 NIKNNFVLIYELLD----------------------------------------EILDFG 119
Query: 181 YPQNSDTGVLKTFILQQGVKSQ--SKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 238
YPQNS+TG LKTFI QQG+KSQ +KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE
Sbjct: 120 YPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 179
Query: 239 YVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXXXXXXXLTVAG 298
VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E
Sbjct: 180 SVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK----------GT 229
Query: 299 GDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRV 358
D+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFELMRYRTTKDI LPFRV
Sbjct: 230 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 289
Query: 359 IPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASEN 418
IPLVRE RTK+EVKVV+KS FK SLL QKIEVRIPTPLNTSGVQ+IC+KGKAKYKASEN
Sbjct: 290 IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASEN 349
Query: 419 AIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEP 478
AIVWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KVRYLKVFEP
Sbjct: 350 AIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEP 409
Query: 479 KLNYSDHDVIKWVRYIGRSGLYETR 503
KLNYSDHDVIKWVRYIGRSG+YETR
Sbjct: 410 KLNYSDHDVIKWVRYIGRSGIYETR 434
Score = 269 bits (687), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 130/173 (75%), Positives = 143/173 (82%), Gaps = 12/173 (6%)
Query: 521 EILDFGYPQNSDTGVLKTFILQQGVKSQ--SKEEQSQITSQVTGQIGWRREGIKYRRNEL 578
EILDFGYPQNS+TG LKTFI QQG+KSQ +KEEQSQITSQVTGQIGWRREGIKYRRNEL
Sbjct: 114 EILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNEL 173
Query: 579 FLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXXXXXX 638
FLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E
Sbjct: 174 FLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK------ 227
Query: 639 XLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691
D+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFELMR
Sbjct: 228 ----GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMR 276
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 446
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/509 (73%), Positives = 401/509 (78%), Gaps = 70/509 (13%)
Query: 1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 60
MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFH+KR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 61 ANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEE 120
+NIWLAAVTKQNVNAAMVFEFL K DVM +YF GKISEE
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYF---------------------GKISEE 99
Query: 121 NIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKXXXXXXXXXXXEILDFG 180
NIKNNFVLIYELLD EILDFG
Sbjct: 100 NIKNNFVLIYELLD----------------------------------------EILDFG 119
Query: 181 YPQNSDTGVLKTFILQQGVKSQ--SKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 238
YPQNS+TG LKTFI QQG+KSQ +KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE
Sbjct: 120 YPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 179
Query: 239 YVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXXXXXXXLTVA- 297
VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E ++
Sbjct: 180 SVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSMEQ 239
Query: 298 ---GGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIAL 354
+D+G+ + IDDC FHQCV+LSKF++E SISFIPPDGEFELMRYRTTKDI L
Sbjct: 240 KLISEEDLGKQS---IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIIL 296
Query: 355 PFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYK 414
PFRVIPLVRE RTK+EVKVV+KS FK SLL QKIEVRIPTPLNTSGVQ+IC+KGKAKYK
Sbjct: 297 PFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYK 356
Query: 415 ASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLK 474
ASENAIVWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KVRYLK
Sbjct: 357 ASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLK 416
Query: 475 VFEPKLNYSDHDVIKWVRYIGRSGLYETR 503
VFEPKLNYSDHDVIKWVRYIGRSG+YETR
Sbjct: 417 VFEPKLNYSDHDVIKWVRYIGRSGIYETR 445
Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/177 (72%), Positives = 144/177 (81%), Gaps = 9/177 (5%)
Query: 521 EILDFGYPQNSDTGVLKTFILQQGVKSQ--SKEEQSQITSQVTGQIGWRREGIKYRRNEL 578
EILDFGYPQNS+TG LKTFI QQG+KSQ +KEEQSQITSQVTGQIGWRREGIKYRRNEL
Sbjct: 114 EILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNEL 173
Query: 579 FLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXXXXXX 638
FLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E
Sbjct: 174 FLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADET 233
Query: 639 XLT----VAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691
+ + +D+G+ + IDDC FHQCV+LSKF++E SISFIPPDGEFELMR
Sbjct: 234 SKSMEQKLISEEDLGKQS---IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMR 287
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Egfr Internalization Peptide Fyralm
Length = 321
Score = 543 bits (1399), Expect = e-154, Method: Compositional matrix adjust.
Identities = 262/323 (81%), Positives = 283/323 (87%), Gaps = 12/323 (3%)
Query: 183 QNSDTGVLKTFILQQGVKSQ--SKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYV 240
QNS+TG LKTFI QQG+KSQ +KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE V
Sbjct: 8 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 67
Query: 241 NLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXXXXXXXLTVAGGD 300
NLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E D
Sbjct: 68 NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK----------GTAD 117
Query: 301 DVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIP 360
+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFELMRYRTTKDI LPFRVIP
Sbjct: 118 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIP 177
Query: 361 LVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAI 420
LVRE RTK+EVKVV+KS FK SLL QKIEVRIPTPLNTSGVQ+IC+KGKAKYKASENAI
Sbjct: 178 LVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAI 237
Query: 421 VWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKL 480
VWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KVRYLKVFEPKL
Sbjct: 238 VWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKL 297
Query: 481 NYSDHDVIKWVRYIGRSGLYETR 503
NYSDHDVIKWVRYIGRSG+YETR
Sbjct: 298 NYSDHDVIKWVRYIGRSGIYETR 320
Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/165 (73%), Positives = 135/165 (81%), Gaps = 12/165 (7%)
Query: 529 QNSDTGVLKTFILQQGVKSQ--SKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYV 586
QNS+TG LKTFI QQG+KSQ +KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE V
Sbjct: 8 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 67
Query: 587 NLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXXXXXXXLTVAGGD 646
NLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E D
Sbjct: 68 NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK----------GTAD 117
Query: 647 DVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691
+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFELMR
Sbjct: 118 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMR 162
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,
Complexed With Egfr Internalization Peptide Fyralm At
2.5 A Resolution
Length = 314
Score = 543 bits (1398), Expect = e-154, Method: Compositional matrix adjust.
Identities = 262/323 (81%), Positives = 283/323 (87%), Gaps = 12/323 (3%)
Query: 183 QNSDTGVLKTFILQQGVKSQ--SKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYV 240
QNS+TG LKTFI QQG+KSQ +KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE V
Sbjct: 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 60
Query: 241 NLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXXXXXXXLTVAGGD 300
NLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E D
Sbjct: 61 NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK----------GTAD 110
Query: 301 DVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIP 360
+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFELMRYRTTKDI LPFRVIP
Sbjct: 111 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIP 170
Query: 361 LVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAI 420
LVRE RTK+EVKVV+KS FK SLL QKIEVRIPTPLNTSGVQ+IC+KGKAKYKASENAI
Sbjct: 171 LVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAI 230
Query: 421 VWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKL 480
VWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KVRYLKVFEPKL
Sbjct: 231 VWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKL 290
Query: 481 NYSDHDVIKWVRYIGRSGLYETR 503
NYSDHDVIKWVRYIGRSG+YETR
Sbjct: 291 NYSDHDVIKWVRYIGRSGIYETR 313
Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/165 (73%), Positives = 135/165 (81%), Gaps = 12/165 (7%)
Query: 529 QNSDTGVLKTFILQQGVKSQ--SKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYV 586
QNS+TG LKTFI QQG+KSQ +KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE V
Sbjct: 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 60
Query: 587 NLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXXXXXXXLTVAGGD 646
NLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E D
Sbjct: 61 NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK----------GTAD 110
Query: 647 DVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691
+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFELMR
Sbjct: 111 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMR 155
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Tgn38 Internalization Peptide Dyqrln
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With P-Selectin Internalization Peptide
Shlgtygvftnaa
Length = 285
Score = 488 bits (1257), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/287 (81%), Positives = 251/287 (87%), Gaps = 10/287 (3%)
Query: 217 QIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGIN 276
QIGWRREGIKYRRNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+N
Sbjct: 8 QIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMN 67
Query: 277 DKIVMEXXXXXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIP 336
DKIV+E D+ +SGK + IDDC FHQCV+LSKF++E SISFIP
Sbjct: 68 DKIVIEKQGK----------GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIP 117
Query: 337 PDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTP 396
PDGEFELMRYRTTKDI LPFRVIPLVRE RTK+EVKVV+KS FK SLL QKIEVRIPTP
Sbjct: 118 PDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTP 177
Query: 397 LNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPIS 456
LNTSGVQ+IC+KGKAKYKASENAIVWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPIS
Sbjct: 178 LNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPIS 237
Query: 457 MNFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 503
MNFEVPFAPSG KVRYLKVFEPKLNYSDHDVIKWVRYIGRSG+YETR
Sbjct: 238 MNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 284
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/129 (72%), Positives = 103/129 (79%), Gaps = 10/129 (7%)
Query: 563 QIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGIN 622
QIGWRREGIKYRRNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+N
Sbjct: 8 QIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMN 67
Query: 623 DKIVMEXXXXXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIP 682
DKIV+E D+ +SGK + IDDC FHQCV+LSKF++E SISFIP
Sbjct: 68 DKIVIEKQGK----------GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIP 117
Query: 683 PDGEFELMR 691
PDGEFELMR
Sbjct: 118 PDGEFELMR 126
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Gabaa Receptor-Gamma2 Subunit-Derived
Internalization Peptide Deeygyecl
pdb|3H85|A Chain A, Molecular Basis For The Association Of Pipki Gamma-P90
With The Clathrin Adaptor Ap-2
Length = 299
Score = 488 bits (1255), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/287 (81%), Positives = 251/287 (87%), Gaps = 10/287 (3%)
Query: 217 QIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGIN 276
QIGWRREGIKYRRNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+N
Sbjct: 22 QIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMN 81
Query: 277 DKIVMEXXXXXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIP 336
DKIV+E D+ +SGK + IDDC FHQCV+LSKF++E SISFIP
Sbjct: 82 DKIVIEKQGK----------GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIP 131
Query: 337 PDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTP 396
PDGEFELMRYRTTKDI LPFRVIPLVRE RTK+EVKVV+KS FK SLL QKIEVRIPTP
Sbjct: 132 PDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTP 191
Query: 397 LNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPIS 456
LNTSGVQ+IC+KGKAKYKASENAIVWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPIS
Sbjct: 192 LNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPIS 251
Query: 457 MNFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 503
MNFEVPFAPSG KVRYLKVFEPKLNYSDHDVIKWVRYIGRSG+YETR
Sbjct: 252 MNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 298
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/129 (72%), Positives = 103/129 (79%), Gaps = 10/129 (7%)
Query: 563 QIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGIN 622
QIGWRREGIKYRRNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+N
Sbjct: 22 QIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMN 81
Query: 623 DKIVMEXXXXXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIP 682
DKIV+E D+ +SGK + IDDC FHQCV+LSKF++E SISFIP
Sbjct: 82 DKIVIEKQGK----------GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIP 131
Query: 683 PDGEFELMR 691
PDGEFELMR
Sbjct: 132 PDGEFELMR 140
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Ctla-4 Internalization Peptide
Ttgvyvkmppt
Length = 288
Score = 475 bits (1222), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/281 (80%), Positives = 245/281 (87%), Gaps = 10/281 (3%)
Query: 223 EGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 282
EGIKYRRNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E
Sbjct: 17 EGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 76
Query: 283 XXXXXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFE 342
D+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFE
Sbjct: 77 KQGK----------GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFE 126
Query: 343 LMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGV 402
LMRYRTTKDI LPFRVIPLVRE RTK+EVKVV+KS FK SLL QKIEVRIPTPLNTSGV
Sbjct: 127 LMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGV 186
Query: 403 QLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVP 462
Q+IC+KGKAKYKASENAIVWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVP
Sbjct: 187 QVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP 246
Query: 463 FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 503
FAPSG KVRYLKVFEPKLNYSDHDVIKWVRYIGRSG+YETR
Sbjct: 247 FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 287
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/123 (70%), Positives = 97/123 (78%), Gaps = 10/123 (8%)
Query: 569 EGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 628
EGIKYRRNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E
Sbjct: 17 EGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 76
Query: 629 XXXXXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFE 688
D+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFE
Sbjct: 77 KQGK----------GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFE 126
Query: 689 LMR 691
LMR
Sbjct: 127 LMR 129
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/275 (80%), Positives = 239/275 (86%), Gaps = 10/275 (3%)
Query: 229 RNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXX 288
RNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E
Sbjct: 120 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK-- 177
Query: 289 XXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRT 348
D+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFELMRYRT
Sbjct: 178 --------GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRT 229
Query: 349 TKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLK 408
TKDI LPFRVIPLVRE RTK+EVKVV+KS FK SLL QKIEVRIPTPLNTSGVQ+IC+K
Sbjct: 230 TKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMK 289
Query: 409 GKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGF 468
GKAKYKASENAIVWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG
Sbjct: 290 GKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGL 349
Query: 469 KVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 503
KVRYLKVFEPKLNYSDHDVIKWVRYIGRSG+YETR
Sbjct: 350 KVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 384
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 91/117 (77%), Gaps = 10/117 (8%)
Query: 575 RNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXX 634
RNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E
Sbjct: 120 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK-- 177
Query: 635 XXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691
D+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFELMR
Sbjct: 178 --------GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMR 226
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 171/505 (33%), Positives = 258/505 (51%), Gaps = 87/505 (17%)
Query: 3 GGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHIKRA 61
++V + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F IK
Sbjct: 4 SAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHN 63
Query: 62 NIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEEN 121
N++L A +K+N ++VF FL K + V YF ++ EE+
Sbjct: 64 NLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEES--------------------- 102
Query: 122 IKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKXXXXXXXXXXXEILDFGY 181
I++NFV+IYELLD E++DFGY
Sbjct: 103 IRDNFVIIYELLD----------------------------------------ELMDFGY 122
Query: 182 PQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVN 241
PQ +D+ +L+ FI Q+G K ++ + T VT + WR EGIKYR+NE+FLDV+E VN
Sbjct: 123 PQTTDSKILQEFITQEGHKLETGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIEAVN 180
Query: 242 LLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXXXXXXXLTVAGGDD 301
LL+S G L + + G + M+ +LSGMPE + G+NDK++ D+
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLF------------------DN 222
Query: 302 VGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPL 361
GR V ++D +FHQCV+LS+FE + +ISFIPPDGEFELM YR + + +
Sbjct: 223 TGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESV 282
Query: 362 VREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIV 421
+ + + +++E V KSQFK +E+ IP P + + G K+ + IV
Sbjct: 283 IEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIV 342
Query: 422 WKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVRYLKVFEPKL 480
W +K G KE + A L + + K +PPIS+ FE+P F SG +VRYLK+ E
Sbjct: 343 WSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK-- 400
Query: 481 NYSDHDVIKWVRYIGRSGLYETRKE 505
S + I WVRYI ++G Y+ R +
Sbjct: 401 --SGYQAIPWVRYITQNGDYQLRTQ 423
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 110/170 (64%), Gaps = 20/170 (11%)
Query: 521 EILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFL 580
E++DFGYPQ +D+ +L+ FI Q+G K ++ + T VT + WR EGIKYR+NE+FL
Sbjct: 116 ELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPAT--VTNAVSWRSEGIKYRKNEVFL 173
Query: 581 DVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXXXXXXXL 640
DV+E VNLL+S G L + + G + M+ +LSGMPE + G+NDK++
Sbjct: 174 DVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLF------------- 220
Query: 641 TVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELM 690
D+ GR V ++D +FHQCV+LS+FE + +ISFIPPDGEFELM
Sbjct: 221 -----DNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELM 265
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EN2|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 162/287 (56%), Gaps = 23/287 (8%)
Query: 220 WRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKI 279
WR EGIKYR+NE+FLDV+E VNLL+S G L + + G + M+ +LSGMPE + G+NDK+
Sbjct: 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKV 61
Query: 280 VMEXXXXXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDG 339
+ D+ GR V ++D +FHQCV+LS+FE + +ISFIPPDG
Sbjct: 62 LF------------------DNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDG 103
Query: 340 EFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNT 399
EFELM YR + + ++ + + +++E V KSQFK +E+ IP P +
Sbjct: 104 EFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDA 163
Query: 400 SGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNF 459
+ G K+ + IVW +K G KE + A L + + K +PPIS+ F
Sbjct: 164 DSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKF 223
Query: 460 EVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRKE 505
E+P F SG +VRYLK+ E S + + WVRYI ++G Y+ R +
Sbjct: 224 EIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGDYQLRTQ 266
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 82/125 (65%), Gaps = 18/125 (14%)
Query: 566 WRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKI 625
WR EGIKYR+NE+FLDV+E VNLL+S G L + + G + M+ +LSGMPE + G+NDK+
Sbjct: 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKV 61
Query: 626 VMEXXXXXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDG 685
+ D+ GR V ++D +FHQCV+LS+FE + +ISFIPPDG
Sbjct: 62 LF------------------DNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDG 103
Query: 686 EFELM 690
EFELM
Sbjct: 104 EFELM 108
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EMZ|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 208 bits (529), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 158/287 (55%), Gaps = 23/287 (8%)
Query: 220 WRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKI 279
WR EGIKYR+NE+FLDV+E VNLL+S G L + + G + + +LSG PE + G+NDK+
Sbjct: 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKXRVFLSGXPELRLGLNDKV 61
Query: 280 VMEXXXXXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDG 339
+ D+ GR V ++D +FHQCV+LS+FE + +ISFIPPDG
Sbjct: 62 LF------------------DNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDG 103
Query: 340 EFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNT 399
EFEL YR + + ++ + + +++E V KSQFK +E+ IP P +
Sbjct: 104 EFELXSYRLNTHVKPLIWIESVIEKHSHSRIEYXVKAKSQFKRRSTANNVEIHIPVPNDA 163
Query: 400 SGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNF 459
+ G K+ + IVW +K G KE A L + + K +PPIS+ F
Sbjct: 164 DSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLXRAHFGLPSVEAEDKEGKPPISVKF 223
Query: 460 EVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRKE 505
E+P F SG +VRYLK+ E S + + WVRYI ++G Y+ R +
Sbjct: 224 EIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGDYQLRTQ 266
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 79/124 (63%), Gaps = 18/124 (14%)
Query: 566 WRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKI 625
WR EGIKYR+NE+FLDV+E VNLL+S G L + + G + + +LSG PE + G+NDK+
Sbjct: 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKXRVFLSGXPELRLGLNDKV 61
Query: 626 VMEXXXXXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDG 685
+ D+ GR V ++D +FHQCV+LS+FE + +ISFIPPDG
Sbjct: 62 LF------------------DNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDG 103
Query: 686 EFEL 689
EFEL
Sbjct: 104 EFEL 107
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4
Su Terminal Domain, In Complex With A Sorting Peptide
From The Precursor Protein (App)
Length = 301
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 46/298 (15%)
Query: 226 KYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXX 285
+ ++NE+FLDV+E +++L++ G L V G++ +KS+L E + G+ ++ +
Sbjct: 29 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSV---- 84
Query: 286 XXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 345
G R P + +D+ FH V L +FE+ + PP GE +MR
Sbjct: 85 -------------GKSELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMR 131
Query: 346 YRTTKDI--ALPFRVIPLVREATRTKMEVKVVLKSQFKASLL--GQKIEVRIPTPLNTSG 401
Y+ + D+ LPFR+ P V + R ++V LK + LL Q + VR+ PL
Sbjct: 132 YQLSDDLPSPLPFRLFPSV-QWDRGSGRLQVYLK--LRCDLLSKSQALNVRLHLPLPRGV 188
Query: 402 VQLICLKGKAKYKA--SENAIVWKIKRMAGMKETQLSAEIEL------------LETDTK 447
V L + KA +E A+ W + R+ G +QLS ++ L T +
Sbjct: 189 VSLSQELSSPEQKAELAEGALRWDLPRVQG--GSQLSGLFQMDVPGPPGPPSHGLST-SA 245
Query: 448 KKWTRPPISMNFEVP-FAPSGFKVRYLKV-FEPKLNYSDHDVIKWVRYIGRSGLYETR 503
P S++FE+P SG +VR+L++ F P N + H KWVR++ S Y R
Sbjct: 246 SPLGLGPASLSFELPRHTCSGLQVRFLRLAFRPSGNANPH---KWVRHLSHSDAYVIR 300
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 572 KYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXX 631
+ ++NE+FLDV+E +++L++ G L V G++ +KS+L E + G+ ++ +
Sbjct: 29 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSV---- 84
Query: 632 XXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691
G R P + +D+ FH V L +FE+ + PP GE +MR
Sbjct: 85 -------------GKSELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMR 131
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a
Subunit C- Terminal Domain, In Complex With A Sorting
Peptide From Tgn38
Length = 261
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 130/294 (44%), Gaps = 49/294 (16%)
Query: 218 IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFG-IN 276
I WRR G+KY NE + DV+E ++ ++ G T+ A + G + LSGMP+ +N
Sbjct: 8 IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMN 67
Query: 277 DKIVMEXXXXXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIP 336
++ +DD FH C++ ++E+E +SFIP
Sbjct: 68 PRL--------------------------------LDDVSFHPCIRFKRWESERVLSFIP 95
Query: 337 PDGEFELMRYRTTKD--IALPFRV---IPLVREATRTKMEVKVVLKSQFKASLLGQKIEV 391
PDG F L+ YR + +A+P V I ++ + ++ + K ++ G + V
Sbjct: 96 PDGNFRLISYRVSSQNLVAIPVYVKHNISFKENSSCGRFDITIGPKQNMGKTIEGITVTV 155
Query: 392 RIP-TPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKW 450
+P LN + L +G + + W + ++ K L + L++ K
Sbjct: 156 HMPKVVLN---MNLTPTQGSYTFDPVTKVLAWDVGKITPQKLPSLKGLVN-LQSGAPKPE 211
Query: 451 TRPPISMNFEV-PFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 503
P +++ F++ A SG KV L ++ K + K V+YI ++G ++ R
Sbjct: 212 ENPNLNIQFKIQQLAISGLKVNRLDMYGEK-----YKPFKGVKYITKAGKFQVR 260
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 33/128 (25%)
Query: 564 IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFG-IN 622
I WRR G+KY NE + DV+E ++ ++ G T+ A + G + LSGMP+ +N
Sbjct: 8 IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMN 67
Query: 623 DKIVMEXXXXXXXXXXXLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIP 682
++ +DD FH C++ ++E+E +SFIP
Sbjct: 68 PRL--------------------------------LDDVSFHPCIRFKRWESERVLSFIP 95
Query: 683 PDGEFELM 690
PDG F L+
Sbjct: 96 PDGNFRLI 103
>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core
pdb|2JKR|I Chain I, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|S Chain S, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|I Chain I, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|S Chain S, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2XA7|S Chain S, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 142
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 106 FIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILK 152
F++V+ YF + E ++ NF +Y ++D+ +L E + +LK
Sbjct: 87 FVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLK 133
>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc
Gamma-2
Length = 124
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 322 KLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVRE------------ATRTK 369
+LS+ E E + IP DG F + + T A+ FR V+ T
Sbjct: 25 RLSRGEAEDMLMRIPRDGAFLIRKREGTDSYAITFRARGKVKHCRINRDGRHFVLGTSAY 84
Query: 370 MEVKVVLKSQFKASLLGQKIEVRIP-TP 396
E V L S ++ L +K+ +R P TP
Sbjct: 85 FESLVELVSYYEKHALYRKMRLRYPVTP 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,557,147
Number of Sequences: 62578
Number of extensions: 714013
Number of successful extensions: 1456
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1374
Number of HSP's gapped (non-prelim): 38
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)