Query psy2523
Match_columns 691
No_of_seqs 327 out of 1636
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 18:24:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0938|consensus 100.0 5E-106 1E-110 815.0 40.2 433 1-503 1-446 (446)
2 KOG0937|consensus 100.0 2.8E-84 6E-89 686.9 39.5 419 2-504 1-424 (424)
3 KOG2740|consensus 100.0 6.1E-69 1.3E-73 550.5 31.4 404 1-504 1-418 (418)
4 PF00928 Adap_comp_sub: Adapto 100.0 8.8E-56 1.9E-60 461.6 32.5 260 218-504 1-262 (262)
5 KOG0938|consensus 100.0 1.2E-51 2.6E-56 419.0 10.4 185 503-691 95-289 (446)
6 KOG2635|consensus 100.0 5E-43 1.1E-47 367.2 32.5 408 2-477 3-491 (512)
7 KOG0937|consensus 100.0 1.1E-42 2.4E-47 369.8 7.9 172 501-691 94-265 (424)
8 KOG2740|consensus 100.0 2.2E-38 4.8E-43 325.6 7.3 158 503-691 98-262 (418)
9 KOG2677|consensus 100.0 7.2E-38 1.6E-42 338.5 8.1 307 157-496 528-884 (922)
10 PF00928 Adap_comp_sub: Adapto 99.9 2.6E-26 5.7E-31 239.6 10.4 104 564-691 1-104 (262)
11 PF01217 Clat_adaptor_s: Clath 99.9 6.2E-21 1.3E-25 181.1 16.2 133 1-195 1-136 (141)
12 KOG2677|consensus 99.8 8.9E-20 1.9E-24 198.8 3.9 147 519-691 546-693 (922)
13 COG5030 APS2 Clathrin adaptor 99.4 6.3E-13 1.4E-17 121.0 10.1 115 1-137 1-118 (152)
14 KOG0934|consensus 99.4 6.7E-13 1.5E-17 120.8 5.7 120 1-141 1-122 (145)
15 KOG0935|consensus 99.2 1.1E-10 2.3E-15 103.8 8.4 119 1-141 1-123 (143)
16 KOG0936|consensus 99.1 4.1E-10 8.9E-15 104.0 9.0 113 1-135 1-122 (182)
17 PF10291 muHD: Muniscin C-term 98.8 7.4E-07 1.6E-11 93.0 20.7 230 232-502 3-256 (257)
18 KOG3343|consensus 98.7 8.8E-08 1.9E-12 89.7 11.2 133 2-194 9-143 (175)
19 COG5541 RET3 Vesicle coat comp 97.1 0.0021 4.6E-08 60.4 8.3 113 2-134 8-130 (187)
20 PF01217 Clat_adaptor_s: Clath 96.0 0.00061 1.3E-08 64.7 -3.1 38 505-542 100-137 (141)
21 PF03164 Mon1: Trafficking pro 90.4 2.3 5E-05 47.8 11.6 89 3-93 12-103 (415)
22 COG5122 TRS23 Transport protei 87.9 7.1 0.00015 35.4 10.3 89 2-95 3-108 (134)
23 KOG2635|consensus 86.9 1.7 3.7E-05 47.9 7.1 85 574-688 273-357 (512)
24 PF08923 MAPKK1_Int: Mitogen-a 86.8 4.4 9.5E-05 37.5 8.8 90 2-91 17-114 (119)
25 PF04099 Sybindin: Sybindin-li 82.7 15 0.00032 35.0 10.8 92 2-94 1-116 (142)
26 KOG0781|consensus 71.8 32 0.0007 39.1 10.7 118 1-141 1-122 (587)
27 KOG0997|consensus 68.8 28 0.00061 39.4 9.5 77 4-82 119-198 (523)
28 PF13774 Longin: Regulated-SNA 67.5 30 0.00066 29.3 7.7 50 45-94 16-65 (83)
29 KOG3368|consensus 52.7 1.9E+02 0.004 27.4 10.3 89 2-94 3-110 (140)
30 PF09201 SRX: SRX; InterPro: 46.5 1.5E+02 0.0032 28.2 8.8 71 1-71 1-86 (148)
31 KOG3369|consensus 43.1 2.3E+02 0.005 28.0 9.7 41 53-95 132-172 (199)
32 PF15001 AP-5_subunit_s1: AP-5 37.4 1.1E+02 0.0023 30.7 6.9 61 53-134 104-165 (189)
33 PF03504 Chlam_OMP6: Chlamydia 35.7 1.7E+02 0.0036 25.4 6.7 43 385-431 43-85 (95)
34 KOG3343|consensus 34.8 23 0.0005 34.2 1.7 32 513-544 116-147 (175)
35 TIGR01451 B_ant_repeat conserv 20.6 2.6E+02 0.0056 21.8 5.0 33 367-401 11-43 (53)
No 1
>KOG0938|consensus
Probab=100.00 E-value=4.8e-106 Score=814.96 Aligned_cols=433 Identities=58% Similarity=0.972 Sum_probs=397.3
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCcchhhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHHH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFE 80 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~~~~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~e 80 (691)
||+|+||+|.+||+||.|.||+|+.+++.|+||.+++++ ...++|+..++++.|+|+++++||+|++|++|.|.++++|
T Consensus 1 misglfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n-~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~e 79 (446)
T KOG0938|consen 1 MISGLFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINN-LDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFE 79 (446)
T ss_pred CcceEEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhc-cccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHH
Confidence 999999999999999999999999999999999999976 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCccccccchhhhHHHhhhcccc
Q psy2523 81 FLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKEN 160 (691)
Q Consensus 81 ~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~~~~~~~~~~~~~~~~~ke~ 160 (691)
||.++..++.+||| +++|+.|++||.+||||||
T Consensus 80 Fl~kl~avm~aYfg---------------------k~~Eeaiknnf~lI~ElLD-------------------------- 112 (446)
T KOG0938|consen 80 FLYKLDAVMNAYFG---------------------KDREEAIKNNFVLIYELLD-------------------------- 112 (446)
T ss_pred HHHHHHHHHHHHhc---------------------ccchhhhhhceEeHHHHHH--------------------------
Confidence 99999999999999 8999999999999999999
Q ss_pred cccccCCCCCCCccccccCCccCCCCchhhhhhhcccCcccccc------ccccccc----cccccccccccCCcccccc
Q psy2523 161 TYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQSK------EEQSQIT----SQVTGQIGWRREGIKYRRN 230 (691)
Q Consensus 161 ~~~~~~~~~~~~~~E~~d~G~p~~~~~~~Lk~~i~~~~~~~~~~------~~~~~~~----~~~~~~~~WR~~~i~y~kN 230 (691)
||+||||||+++++.|+.+|+.+++++.+. +..++.+ ++.+++++||++|++|++|
T Consensus 113 --------------emld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~~ssqv~G~i~WRr~Gi~ykkn 178 (446)
T KOG0938|consen 113 --------------EMLDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQATELRSSQVTGKIGWRREGIKYKKN 178 (446)
T ss_pred --------------HHHhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCcccccccccccccccccccccceeccc
Confidence 999999999999999999999888776521 1122333 5677899999999999999
Q ss_pred eEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhcc-CCCCCCCCCccccCCCCCCCCCCCe
Q psy2523 231 ELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAK-GGSSAKSSGLTVAGGDDVGRSGKPV 309 (691)
Q Consensus 231 EI~vDVvE~v~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (691)
|||+||+|++|.+++++|++++++|+|.|.|+|+|||||+|++||||++.++.. ..+..++ .+.+..+.++...
T Consensus 179 evfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks~~-----~n~~~~sks~~g~ 253 (446)
T KOG0938|consen 179 EVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKSDF-----GNKNFPSKSGKGS 253 (446)
T ss_pred eeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceeeccccccccc-----cccCCCcccCCce
Confidence 999999999999999999999999999999999999999999999999887733 2211110 1112223445566
Q ss_pred eeeccccccccccccCcCccceEEEecCCCceEEEEEEecCCCCCCeEEEEEEEecCCeEEEEEEEEeeccCcccccceE
Q psy2523 310 VVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKI 389 (691)
Q Consensus 310 i~ldd~~FH~cV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~~lPf~i~p~~~~~~~~~vei~l~l~~~~~~~~~~~~V 389 (691)
+.||||+||+||++++|++++.|+|+||||+|+||+||++.++.+||++.|.+++.+.+++||++.+++.|++++.+.+|
T Consensus 254 v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~enInlPFrV~PiV~el~r~kie~ri~iks~f~~kl~a~~v 333 (446)
T KOG0938|consen 254 VLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTENINLPFRVTPIVTELGRTKIEYRITIKSLFPPKLLAKDV 333 (446)
T ss_pred EEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccCcccceEeeeheecccceeEEEEEEEeccCCchhhhcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCcceEEEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeecC-CCCCCCCCCeEEEEEee-ccCCC
Q psy2523 390 EVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETD-TKKKWTRPPISMNFEVP-FAPSG 467 (691)
Q Consensus 390 ~I~iPlP~~~~~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~~-~~~~~~~~pi~v~F~ip-~t~SG 467 (691)
.++||+|+++..+++.++.|+|+|.|++++++|+|++++|.+|.+++|++++.++. ..+.|.+|||+++|++| ||.||
T Consensus 334 ~~rIPvP~ntv~~n~~v~~Gkaky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~WtrPPIsleFeV~MFt~SG 413 (446)
T KOG0938|consen 334 VVRIPVPPNTVKCNISVSNGKAKYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQWTRPPISLEFEVPMFTNSG 413 (446)
T ss_pred EEEecCCCccccceeEEecCccccCcccceEEEEecccCCcccceeEEEEEeccCccccccccCCCceeEEeeeeecCCc
Confidence 99999999999999999999999999999999999999999999999999998765 45679999999999999 99999
Q ss_pred cEEEEEEeeccCCCCCCCceeEEEEEEecCCceeEE
Q psy2523 468 FKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 503 (691)
Q Consensus 468 l~V~~L~V~e~~~~~~~~~~~KwVRYiT~Sg~Y~~r 503 (691)
|.||||+|.|+ .+.|+..|||||+|+||+|++|
T Consensus 414 L~VrylkV~e~---~Sk~~~vkWVrYitkaGsyEiR 446 (446)
T KOG0938|consen 414 LVVRYLKVSEK---DSKHRAVKWVRYITKAGSYEIR 446 (446)
T ss_pred eEEEEEEEecc---cCCCceEEEEEEecccceeeeC
Confidence 99999999884 3789999999999999999987
No 2
>KOG0937|consensus
Probab=100.00 E-value=2.8e-84 Score=686.93 Aligned_cols=419 Identities=42% Similarity=0.755 Sum_probs=378.3
Q ss_pred eEEEEEEeCCCCEEEEEcccCCcchhhHHHHHHhhcccc-CCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHHH
Q psy2523 2 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR-QQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFE 80 (691)
Q Consensus 2 i~~i~I~~~~G~~li~r~y~~~~~~~~~~~f~~~~~~~~-~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~e 80 (691)
++|+||+|.+|++|++|.||++++.+.++.|..++.... ....+|++..++++|+|+++++||++++++.|.|++.+++
T Consensus 1 ~sa~fild~~G~~lisr~yr~dv~~s~~~~F~~~l~~~e~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~~v~~ 80 (424)
T KOG0937|consen 1 ASAVFILDHKGEVLISRDYRGDVPMSSTEKFFRKLFEKEEGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAALVLS 80 (424)
T ss_pred CceEEEEcCCCcEeEeecccccCChhhhhhHHHHHhhhcccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHHHHHH
Confidence 589999999999999999999999999999998777432 2357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCccccccchhhhHHHhhhcccc
Q psy2523 81 FLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKEN 160 (691)
Q Consensus 81 ~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~~~~~~~~~~~~~~~~~ke~ 160 (691)
||++++.++.+||+ .+.|+.+++||+++||+||
T Consensus 81 ~l~~~~~v~~~y~~---------------------~l~e~si~~n~vlvyElLd-------------------------- 113 (424)
T KOG0937|consen 81 FLYAVADVFGDYLS---------------------ELEEESIRDNFVLVYELLD-------------------------- 113 (424)
T ss_pred HHHHHHHHHHHHhc---------------------cCCccceecchHHHHHHHH--------------------------
Confidence 99999999999999 8999999999999999999
Q ss_pred cccccCCCCCCCccccccCCccCCCCchhhhhhhcccCccccccccccccccccccccccccCCcccccceEEEEEEEEE
Q psy2523 161 TYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYV 240 (691)
Q Consensus 161 ~~~~~~~~~~~~~~E~~d~G~p~~~~~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~i~y~kNEI~vDVvE~v 240 (691)
|++||||||.|++..|++||+.++...... ..+.+.+.+.+++||+.|++|+|||+|+||+|+|
T Consensus 114 --------------e~mDFGypQ~t~s~iL~~yi~~~~~~l~~~--~~~~p~avtnavsWrs~gi~~~KnevflDViE~V 177 (424)
T KOG0937|consen 114 --------------EVMDFGYPQTTDSEILKNYITQKANRLQDA--QPRPPLAVTNAVSWRSEGIYYGKNEVFLDVIESV 177 (424)
T ss_pred --------------HHhccCCcccchHHHHHHHhcccccceeec--CCCCCcccccceeecccccccccceEEEEhhhhh
Confidence 999999999999999999999875443211 1134666788899999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhccCCCCCCCCCccccCCCCCCCCCCCeeeecccccccc
Q psy2523 241 NLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQC 320 (691)
Q Consensus 241 ~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ldd~~FH~c 320 (691)
+++++++|.++.++|.|+|+|||+|+|||+|+|+||+...++..+ .+++..++.++|++||+|
T Consensus 178 s~l~~~~G~vl~s~i~G~I~~k~~LsGmPelrl~ln~~~~~~~~~-----------------~~~~s~~v~ledi~fh~~ 240 (424)
T KOG0937|consen 178 SLLYDSNGIVLLSEIVGTIKLKCYLSGMPELRLGLNDKVLFDKQG-----------------PRSKSKGVELEDIKFHEC 240 (424)
T ss_pred hHhhhcCCcEEEeeeeeEEEEEEEcCCCceeeeecCccccccccc-----------------ccccCcceEeeeccccee
Confidence 999999999999999999999999999999999999997655432 122235689999999999
Q ss_pred ccccCcCccceEEEecCCCceEEEEEEecCCCCCCeEEEEEE-EecCCeEEEEEEEEeeccCcccccceEEEEEcCCCCC
Q psy2523 321 VKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLV-REATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNT 399 (691)
Q Consensus 321 V~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~~lPf~i~p~~-~~~~~~~vei~l~l~~~~~~~~~~~~V~I~iPlP~~~ 399 (691)
|++++|+.+|+|+|+||||+|+||+||.+...+ |+...+.+ +.++.+++++.++++++|+++..+.+|+|+||+|..+
T Consensus 241 v~l~~fd~dr~i~FiPPdGeF~Lm~Y~ls~~vk-Pli~~~~~~~~~~~~ri~i~~K~~~~fk~~~~a~~v~I~iP~P~~a 319 (424)
T KOG0937|consen 241 VRLSRFDNDRTISFIPPDGEFELMRYRLSTHVK-PLIWFYQLIEEHSRSRIEVMVKLREQFKSRSSANNVEICIPVPDDA 319 (424)
T ss_pred echhhccCCceEEecCCCCceEEEEEEecCCCC-CeEEeeeeeeeccceeEEEEEechhhcCCccccceEEEEeeCCCcc
Confidence 999999999999999999999999999998876 66555544 4567889999999999999999999999999999999
Q ss_pred cceEEEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeecCCCC--CCCCCCeEEEEEee-ccCCCcEEEEEEee
Q psy2523 400 SGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKK--KWTRPPISMNFEVP-FAPSGFKVRYLKVF 476 (691)
Q Consensus 400 ~~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~~~~~--~~~~~pi~v~F~ip-~t~SGl~V~~L~V~ 476 (691)
+.+.++.+.|+++|.+++++++|+|++++|+.+..+++++.+++...++ ....+||+|+|+|| ||+||++|+++++.
T Consensus 320 ~~~~fk~s~G~~~~~~e~~~l~W~I~~~~gg~e~~~r~~~~lp~~~~e~~~~~~~~pi~v~FeIp~~T~SgiqVrylki~ 399 (424)
T KOG0937|consen 320 SSPSFKTSLGSAKYDPEKSALRWTIKKFVGGKEYSLRARMDLPSEEHEEQCTEGLGPIKVKFEIPYFTVSGIQVRYLKII 399 (424)
T ss_pred ccceEeccCCceeeecccceEEEEeccccCCceEEEEEeecCCccccCCCCcccCCceEEEEEecccccCCeEEEEEEec
Confidence 9999999999999999999999999999999999999999997765544 34689999999999 99999999999998
Q ss_pred ccCCCCCCCceeEEEEEEecCCceeEEe
Q psy2523 477 EPKLNYSDHDVIKWVRYIGRSGLYETRK 504 (691)
Q Consensus 477 e~~~~~~~~~~~KwVRYiT~Sg~Y~~r~ 504 (691)
+++ .+|++++||||+|+||.|++|+
T Consensus 400 ep~---~~y~s~~WVRy~T~s~~Y~~r~ 424 (424)
T KOG0937|consen 400 EPK---SQYQSLPWVRYNTQSGPYEIRV 424 (424)
T ss_pred ccc---cCCCccceEEEEccCCceEeeC
Confidence 853 5899999999999999999984
No 3
>KOG2740|consensus
Probab=100.00 E-value=6.1e-69 Score=550.51 Aligned_cols=404 Identities=28% Similarity=0.501 Sum_probs=353.4
Q ss_pred CeEEEEEEeCCCCEEEEEcccC-CcchhhHHHHHHhhccc-cCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRD-DIGRNAVDAFRVNVIHA-RQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMV 78 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~-~~~~~~~~~f~~~~~~~-~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~ 78 (691)
||.+||++|.+|++++++++++ ...|.+++-|+...... +.+..+|++..+.+.++.+-++++|||+++..+..|+++
T Consensus 1 mi~siflidtsg~l~lek~~~g~t~~rsic~~f~e~~~~~~~~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~pPL~~ 80 (418)
T KOG2740|consen 1 MILSIFLIDTSGDLLLEKHLKGSTVVRSICDYFFEDQSSDDDLEHVPPVISTPHHYLFSVYRDLIFFCAVSTVETPPLMV 80 (418)
T ss_pred CeeEEEEEcCCchhhhhHhhCCceeeeehHHHHHHhhhhccccccCCceecCCceeeeeeeccCcEEEEEEeccCCChhH
Confidence 9999999999999999999995 44588898887665533 224678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCccccccchhhhHHHhhhcc
Q psy2523 79 FEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRK 158 (691)
Q Consensus 79 ~e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~~~~~~~~~~~~~~~~~k 158 (691)
+||||++++++.+||| .++|..|++|+.+||||||
T Consensus 81 iefL~rv~dv~~eyFg---------------------~~s~~~Ik~N~~vv~ell~------------------------ 115 (418)
T KOG2740|consen 81 IEFLHRVVDVLLEYFG---------------------GLSESKIKDNVVVVYELLD------------------------ 115 (418)
T ss_pred HHHHHHHHHHHHHHhc---------------------ccCHhHhhcceeeHHHHHH------------------------
Confidence 9999999999999999 8999999999999999999
Q ss_pred cccccccCCCCCCCccccccCCccCCCCchhhhhhhcccCcccc------ccc-cccccccccccccccccCCcccccce
Q psy2523 159 ENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQ------SKE-EQSQITSQVTGQIGWRREGIKYRRNE 231 (691)
Q Consensus 159 e~~~~~~~~~~~~~~~E~~d~G~p~~~~~~~Lk~~i~~~~~~~~------~~~-~~~~~~~~~~~~~~WR~~~i~y~kNE 231 (691)
||+|+|+|..++++.||+.|.+.++.++ +.. .+..+|.++.+.+|||+++.+|.+||
T Consensus 116 ----------------emiDnGfpl~tE~NiLke~i~pps~l~~~~~svTg~~n~~~~lPtg~~s~VPWR~~~~Ky~nNE 179 (418)
T KOG2740|consen 116 ----------------EMIDNGFPLVTEPNILKELIPPPSFLSKKFNSVTGNSNVSDTLPTGALSNVPWRTAGVKYTNNE 179 (418)
T ss_pred ----------------HHHHcCCCcccChhHHHhhcCChHHHHHHHhhhhccccccccCCCcccccccccccCcccccch
Confidence 9999999999999999999988765542 111 22456777888899999999999999
Q ss_pred EEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhccCCCCCCCCCccccCCCCCCCCCCCeee
Q psy2523 232 LFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVV 311 (691)
Q Consensus 232 I~vDVvE~v~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 311 (691)
.||||+|+++|+++++|..+.++|.|.|.|+|+|+|||++.|.|+++ ..
T Consensus 180 ~yvdvlEeidai~~k~gslv~~eI~g~vd~~~qLsgmPdltlsl~np-------------------------------~~ 228 (418)
T KOG2740|consen 180 AYVDVLEEIDAIVDKKGSLVFGEIQGIVDVCSQLSGMPDLTLSLNNP-------------------------------RL 228 (418)
T ss_pred hhhhhhheeheEecCCCCEEEEEEEEEEEEEEeecCCCceEEEccCc-------------------------------cc
Confidence 99999999999999999999999999999999999999999999753 46
Q ss_pred eccccccccccccCcCccceEEEecCCCceEEEEEEecCC--CCCCeEEEEEEEecCC--eEEEEEEEEeeccCcccccc
Q psy2523 312 IDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKD--IALPFRVIPLVREATR--TKMEVKVVLKSQFKASLLGQ 387 (691)
Q Consensus 312 ldd~~FH~cV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~--~~lPf~i~p~~~~~~~--~~vei~l~l~~~~~~~~~~~ 387 (691)
|+|++|||||++.+|++++.|+|+||||+|+||+||++.. ..+|..+.+...-.+. +++++++..+....+ ..+
T Consensus 229 L~dvsfHpcVr~krwe~~~~lsFIPPDGkFrLlsy~v~~~~~v~~pvyv~~~i~l~~~~~~ri~~tvg~~~~~gK--~ie 306 (418)
T KOG2740|consen 229 LGDVSFHPCVRYKRWESHSVLSFIPPDGKFRLLSYRVDAQNQVAIPVYVKNSISLDSNHQGRISLTVGPKKKMGK--TIE 306 (418)
T ss_pred cCCcccccceeecccccccceEEcCCCCcEEEEEEEEehhhccccceEEeeeeccCCCceEEEEEeccccccccc--eeE
Confidence 8999999999999999999999999999999999999864 5689999888764433 344444443333222 356
Q ss_pred eEEEEEcCCCCCcceEEEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeecCCCCCCCCCCeEEEEEee-ccCC
Q psy2523 388 KIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPS 466 (691)
Q Consensus 388 ~V~I~iPlP~~~~~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~~~~~~~~~~pi~v~F~ip-~t~S 466 (691)
.+.|....|+.+.......++|+..++...+.+-|+++++..+..+.|+|.+++.+.. .+...++.++++|++. .++|
T Consensus 307 ~itVt~~~pn~i~~~~k~~~~g~~~~~~~~k~l~W~~~~i~tg~lp~Lkg~~~~e~~~-sk~~~l~t~~Lqykiqg~als 385 (418)
T KOG2740|consen 307 LITVTVQDPNEIAYASKILTHGTFTNSIIMKQLTWTFGSIATGKLPVLKGTINLEPGF-SKKVDLPTLSLQYKIQGQALS 385 (418)
T ss_pred eEEEEecCccceeeeecccccceeEeecccceeEEEeecccCCcccccccccccCCCC-CccccCcccceeeeeeeeecc
Confidence 7788889999988888888999999999999999999999999999999999987543 4455789999999999 9999
Q ss_pred CcEEEEEEeeccCCCCCCCceeEEEEEEecCCceeEEe
Q psy2523 467 GFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRK 504 (691)
Q Consensus 467 Gl~V~~L~V~e~~~~~~~~~~~KwVRYiT~Sg~Y~~r~ 504 (691)
|++|+.|++... .|++||||||.|+||.+++|+
T Consensus 386 glkVe~Ldm~~~-----~~k~yKGvKy~t~agnfqvR~ 418 (418)
T KOG2740|consen 386 GLKVERLDMYGE-----PYKPYKGVKYKTKAGNFQVRL 418 (418)
T ss_pred ceEEEeeeecCC-----CCccccceEEEEeeeeEEEeC
Confidence 999999999875 589999999999999999994
No 4
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents the C-terminal domain of the mu subunit from various clathrin adaptors (AP1, AP2 and AP3) []. The C-teminal domain has an immunoglobulin-like beta-sandwich fold consisting of 9 strands in 2 sheets with a Greek key topology, similar to that found in cytochrome f and certain transcription factors []. The mu subunit regulates the coupling of clathrin lattices with particular membrane proteins by self-phosphorylation via a mechanism that is still unclear []. The mu subunit possesses a highly conserved N-terminal domain of around 230 amino acids, which may be the region of interaction with other AP proteins; a linker region of between 10 and 42 amino acids; and a less well-conserved C-terminal domain of around 190 amino acids, which may be the site of specific interaction with the protein being transported in the vesicle []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1H6E_A 3L81_A 1W63_V 4EMZ_A 4EN2_A 2VGL_M 3ML6_F 2PR9_A 2JKT_M 1I31_A ....
Probab=100.00 E-value=8.8e-56 Score=461.58 Aligned_cols=260 Identities=42% Similarity=0.784 Sum_probs=218.2
Q ss_pred cccccCCcccccceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhccCCCCCCCCCcccc
Q psy2523 218 IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVA 297 (691)
Q Consensus 218 ~~WR~~~i~y~kNEI~vDVvE~v~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~ 297 (691)
+|||+.+++|++|||||||+|+++|+++++|.++.++|.|+|.|+|+|+|+|+|+|+||+++.+
T Consensus 1 ~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~v~~~~~l~g~p~i~l~l~~~~~~---------------- 64 (262)
T PF00928_consen 1 VPWRPSGIKYKKNEIFVDVVEKISAVLDRDGNILSSEVKGSVQCKSFLSGMPEIKLTLNNPLVV---------------- 64 (262)
T ss_dssp -TTS-STB--SSEEEEEEEEEEEEEEEETTSEEEEEEEEEEEEEEEE-SST-EEEEEESSSCCC----------------
T ss_pred CCcccCCcccccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeCCCCCeEEEEecCcccc----------------
Confidence 5899999999999999999999999999999999999999999999999999999999987432
Q ss_pred CCCCCCCCCCCeeeeccccccccccccCcCccceEEEecCCCceEEEEEEecCCCCCCeEEEEEEEecCCeEEEEEEEEe
Q psy2523 298 GGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLK 377 (691)
Q Consensus 298 ~~~~~~~~~~~~i~ldd~~FH~cV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~~lPf~i~p~~~~~~~~~vei~l~l~ 377 (691)
..+++.++|++|||||++++|+++|.|+|+||||+|+||+||++....+||.+.|++...+++++++.++++
T Consensus 65 --------~~~~~~l~~~~fH~cV~~~~~~~~~~i~f~PPdg~f~Ll~Yr~~~~~~~P~~i~~~~~~~~~~~~~v~i~~~ 136 (262)
T PF00928_consen 65 --------SKNGIKLDDVSFHPCVDLSKFESDRVISFIPPDGEFTLLRYRVSSNSPLPFKITCWVSEKSSGRFEVTIELE 136 (262)
T ss_dssp --------TSSSBEESEEEEETTEECCCCCSHTEEEE---SEEEEEEEEEEESSS--SEEEEEEEEEETTTEEEEEEEEE
T ss_pred --------ccCceeeeceeeccccCccccccccceecCCCCceEEEEEEEccCCCCCCcEEEEEeccCCCceEEEEEEec
Confidence 124588999999999999999999999999999999999999998888999999988877778999999999
Q ss_pred eccCcccccceEEEEEcCCCCCcceEEEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeecCCCC-CCCCCCeE
Q psy2523 378 SQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKK-KWTRPPIS 456 (691)
Q Consensus 378 ~~~~~~~~~~~V~I~iPlP~~~~~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~~~~~-~~~~~pi~ 456 (691)
++++....+++|.|+||+|.++..+++.++.|+++|++++++++|+|++++++.+++++|++++....... .+.++||+
T Consensus 137 ~~~~~~~~~~~v~I~iplP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~pi~ 216 (262)
T PF00928_consen 137 SNFPNKISLENVVIRIPLPPGTSSPSIESSDGSAEYDEEENALVWKIKKLPGGSESTLSGTLEFSSPSSVPSDWSFFPIS 216 (262)
T ss_dssp E-S-TTSEEEEEEEEEE--TTEEEEEEEESSSEEEEETGCTEEEEEEEEEETSEEEEEEEEEEEEEECCSS-S-----EE
T ss_pred ccCCCCceeceEEEEeecCCccccceeeecCceEEEEccCCEEEEEECCccCcccccEEEEEEecCCCcccccccceeEE
Confidence 99888778999999999999999999999999999999999999999999999999999999997654322 23688999
Q ss_pred EEEEee-ccCCCcEEEEEEeeccCCCCCCCceeEEEEEEecCCceeEEe
Q psy2523 457 MNFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRK 504 (691)
Q Consensus 457 v~F~ip-~t~SGl~V~~L~V~e~~~~~~~~~~~KwVRYiT~Sg~Y~~r~ 504 (691)
|+|++| +++||++|++++|.+.. .+|+|+|||||+|+||+|++|+
T Consensus 217 v~F~~~~~~~Sgl~V~~l~v~~~~---~~~~~~k~vky~t~s~~Y~iR~ 262 (262)
T PF00928_consen 217 VEFTIPGYTLSGLKVRSLDVVNED---ENYKPYKWVKYVTKSGSYEIRT 262 (262)
T ss_dssp EEEEESTSETTT-EEEEEEEE-SS---CGGGSEEEEEEEEEEEEEEE--
T ss_pred EEEEeCCcccCCCEEEEEEeEecC---CCCCCcccEEEEEEcCcEEEcC
Confidence 999999 99999999999997632 4799999999999999999995
No 5
>KOG0938|consensus
Probab=100.00 E-value=1.2e-51 Score=418.95 Aligned_cols=185 Identities=55% Similarity=0.896 Sum_probs=156.1
Q ss_pred EeeccccccCCccCCCcccccCCCcccccChHHHHHhhccccccccc------cccccccc----cccccccccccCCcc
Q psy2523 503 RKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQS------KEEQSQIT----SQVTGQIGWRREGIK 572 (691)
Q Consensus 503 r~e~~~k~~~~~~yelLdE~~D~G~pq~t~~~~Lk~~i~~~~~~~~~------~~~~~~~~----~~~~~~~~WR~~~i~ 572 (691)
.-|+.+|+++.++||||||||||||||+|++++|+.+|+++++..+. .+..++++ ++.+++++||+.|++
T Consensus 95 ~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~~ssqv~G~i~WRr~Gi~ 174 (446)
T KOG0938|consen 95 DREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQATELRSSQVTGKIGWRREGIK 174 (446)
T ss_pred cchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCcccccccccccccccccccccce
Confidence 44667888888999999999999999999999999999999987752 12234454 567899999999999
Q ss_pred cccceEEEEEEEEEEEEEcCCCcEEEEEEeEEEEEEEeecCCCeeEEeeccceeeeccCCCCCcCCCccccCCCCCCCCC
Q psy2523 573 YRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSG 652 (691)
Q Consensus 573 y~kNEi~vDv~E~i~~~~~~~G~vl~~~i~G~I~~~s~LsG~P~~~l~lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (691)
|+|||+|+||+|++|++++++|++|+++|+|.|.|+|||||||+|++||||++.++++.+....+.| +.+--..++
T Consensus 175 ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks~~~----n~~~~sks~ 250 (446)
T KOG0938|consen 175 YKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKSDFG----NKNFPSKSG 250 (446)
T ss_pred eccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceeecccccccccc----ccCCCcccC
Confidence 9999999999999999999999999999999999999999999999999999999854322111110 111122334
Q ss_pred CCeEEeccccCcccccCCCccccCcEEEeCCCCceEecC
Q psy2523 653 KPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691 (691)
Q Consensus 653 ~~~~~l~d~~FH~cV~l~~f~~~r~i~FiPPDG~F~Lm~ 691 (691)
+..+.||||.|||||+|++|+++++|+|+|||||||||+
T Consensus 251 ~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMk 289 (446)
T KOG0938|consen 251 KGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMK 289 (446)
T ss_pred CceEEeeccchheeeccccccccceEEEeCCCCceEeEe
Confidence 556999999999999999999999999999999999996
No 6
>KOG2635|consensus
Probab=100.00 E-value=5e-43 Score=367.17 Aligned_cols=408 Identities=17% Similarity=0.226 Sum_probs=307.4
Q ss_pred eEEEEEEeCCCCEEEEEcccCCcc---hhhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHH
Q psy2523 2 IGGLFVYNHKGEVLISRVYRDDIG---RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMV 78 (691)
Q Consensus 2 i~~i~I~~~~G~~li~r~y~~~~~---~~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~ 78 (691)
+-+.-|+++.|+.+++|+|++|.+ .+.+.+| +++.. ...++.+++.+.+||||++.++||+|++|++++|++.+
T Consensus 3 vlaa~i~t~~Gk~ivsRqf~~Msr~RIEgLl~aF-pkLv~--~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIleD 79 (512)
T KOG2635|consen 3 VLAASINTKTGKAIVSRQFREMSRSRIEGLLAAF-PKLVS--AGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNILED 79 (512)
T ss_pred EEEEEEeecCCceeeehHhHhhhHHHHHHHHHHh-HHhhc--cCCCccEEecccEEEEEEecccEEEEEEeccccchhhH
Confidence 457788999999999999997765 4667888 56653 24689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcc-cccC---------------ccc
Q psy2523 79 FEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDD-RYLG---------------MES 142 (691)
Q Consensus 79 ~e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde-~~~g---------------~~~ 142 (691)
+++|++|.+++++||. .++|..|.+|.+-+..+||| +.|| |+|
T Consensus 80 l~TL~Lfskvipey~~---------------------slde~eI~~~~FelifAFDEivsLGyre~v~laQikty~eMdS 138 (512)
T KOG2635|consen 80 LETLRLFSKVIPEYCS---------------------SLDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLEMDS 138 (512)
T ss_pred HHHHHHHHHhchhhhh---------------------hhhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhcccc
Confidence 9999999999999999 89999999997744448999 4588 999
Q ss_pred cccchhhhHHHhhhcccccccccCCCCCCCc----cccccCC--------------ccCCCCchhhhhhhc---------
Q psy2523 143 ERGRASYILKIVHDRKENTYKSFNPSSFPSP----SEILDFG--------------YPQNSDTGVLKTFIL--------- 195 (691)
Q Consensus 143 ~~~~~~~~~~~~~~~ke~~~~~~~~~~~~~~----~E~~d~G--------------~p~~~~~~~Lk~~i~--------- 195 (691)
|+++ +++++.++||.++++.++++..|+ .|..+-| |-.-...++......
T Consensus 139 HEEK---i~e~v~~nke~ea~q~mkrKaKElqr~r~ea~rrgg~~~~~~~~~~s~g~~~~s~~~~~~~~~~~~~~~~~~s 215 (512)
T KOG2635|consen 139 HEEK---IHELVMRNKEREAKQEMKRKAKELQRARKEAERRGGSLNPGFDAIGSSGYSSVSTTNAINRVESIAQKPKQQS 215 (512)
T ss_pred HHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccccccccCCcccchhhccccccccccccc
Confidence 9997 889999999999988776665543 1222211 211111111111100
Q ss_pred --------ccCccccccccc------------cccc---c---ccccccccccCCcccccceEEEEEEEEEEEEEcCCCC
Q psy2523 196 --------QQGVKSQSKEEQ------------SQIT---S---QVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQ 249 (691)
Q Consensus 196 --------~~~~~~~~~~~~------------~~~~---~---~~~~~~~WR~~~i~y~kNEI~vDVvE~v~~i~~~~G~ 249 (691)
..+++.+.+... ..+. + .++...|- +......+|-|++.|.|+|++.++++|.
T Consensus 216 a~~~~s~pak~mklG~k~~~s~~~~d~Lk~ege~ia~~~s~~g~~s~aap~-~~~p~v~~e~v~i~ieEkln~~~~RDGg 294 (512)
T KOG2635|consen 216 AAKASSAPAKAMKLGKKTKNSDTFVDKLKGEGERIAGASSAIGSASSAAPP-PTAPDVPEESVHIVIEEKLNVRLSRDGG 294 (512)
T ss_pred cccCCCCCchhhhhcccccchhhHHHHhhccccccccccccccccccCCCC-CCCCCCccceEEEEEeeeEeEEEcccCC
Confidence 001111111000 0010 0 01111111 2234456677999999999999999999
Q ss_pred EEEEEEEEEEEEEEecCCCCeEEEEecccchhhccCCCCCCCCCccccCCCCCCCCCCCeeeeccccccccccccCcCcc
Q psy2523 250 TLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETE 329 (691)
Q Consensus 250 i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ldd~~FH~cV~l~~f~~~ 329 (691)
+-+.++.|.+.++.-..-..++.|.|++.. ..++ ++++||++|++.|.++
T Consensus 295 i~s~E~qG~lsLrI~d~e~~~i~lkl~n~~---------------------------~~g~---q~ktHPNlDK~~f~s~ 344 (512)
T KOG2635|consen 295 IKSGEVQGTLSLRIKDEEYGDIELKLANGR---------------------------DKGT---QLKTHPNLDKKVFLSS 344 (512)
T ss_pred ccceeeeeeEEEEEccccccceEEEEcCCC---------------------------Ccce---eeeeCCCcchhhhccc
Confidence 999999999999999999999999997531 1122 6899999999999999
Q ss_pred ceEEEecCCCceE------EEEEEecC--CCCCCeEEEEEEEecCCe-EEEEEEEEeeccCcccccceEEEEEcCCCCCc
Q psy2523 330 HSISFIPPDGEFE------LMRYRTTK--DIALPFRVIPLVREATRT-KMEVKVVLKSQFKASLLGQKIEVRIPTPLNTS 400 (691)
Q Consensus 330 r~IsFiPPDG~F~------Lm~Yr~~~--~~~lPf~i~p~~~~~~~~-~vei~l~l~~~~~~~~~~~~V~I~iPlP~~~~ 400 (691)
..|.+.+|+..|+ |++||... ...+|++++||..+.+.+ .+.++..+.. .....||.|.||+|.++
T Consensus 345 s~iglk~~~K~FPvn~~VGvLkWR~~~~des~iPlTincWPSes~~g~dV~iEYe~~~----~~eL~dV~i~iPlP~~i- 419 (512)
T KOG2635|consen 345 SLIGLKRPEKPFPVNSDVGVLKWRMVDEDESEIPLTINCWPSESGNGYDVNIEYEAVL----ECELNDVIITIPLPANI- 419 (512)
T ss_pred cccccccCCCCCCcCCcceEEEEeecccccccCceEEEeccccCCCCeEEEEEEeehh----cccccceEEEeeccccc-
Confidence 9999999999997 89999976 357999999998865533 3333333321 23468999999999998
Q ss_pred ceEEEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeecCCCCCCCCCCeEEEEEeeccCCCcEEEEEEeec
Q psy2523 401 GVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFE 477 (691)
Q Consensus 401 ~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~~~~~~~~~~pi~v~F~ip~t~SGl~V~~L~V~e 477 (691)
.+++.+.+|.+.|++.++.+.|.|+.+..+ .+|+++|.-.. ..+..++|++|.|....+++|+.|..+.-.+
T Consensus 420 apsv~~~Dge~~~~~~~~~leW~I~~Ia~N----~SGslEFs~~~-~~~~~fFPl~VsF~s~~~ftgl~vqkVv~~~ 491 (512)
T KOG2635|consen 420 APSVGECDGEYRYDERKNVLEWSIGVIAKN----FSGSLEFSCPA-SDPDGFFPLSVSFTSDTVFTGLFVQKVVRND 491 (512)
T ss_pred CCccceecceEEeccccceeEEEeeeeccC----CCCcEEEeecC-CCCCceeeEEEEEEecccccceEEEEEEEcC
Confidence 788889999999999999999999999444 35666664322 3345799999999999999999999986643
No 7
>KOG0937|consensus
Probab=100.00 E-value=1.1e-42 Score=369.77 Aligned_cols=172 Identities=43% Similarity=0.801 Sum_probs=150.3
Q ss_pred eEEeeccccccCCccCCCcccccCCCcccccChHHHHHhhccccccccccccccccccccccccccccCCcccccceEEE
Q psy2523 501 ETRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFL 580 (691)
Q Consensus 501 ~~r~e~~~k~~~~~~yelLdE~~D~G~pq~t~~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~i~y~kNEi~v 580 (691)
..+.|+....++.++||||||+|||||||+|++++|++||++++...... +.+.+.+.|++++||+.|++|+|||+|+
T Consensus 94 ~~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~~yi~~~~~~l~~~--~~~~p~avtnavsWrs~gi~~~Knevfl 171 (424)
T KOG0937|consen 94 SELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILKNYITQKANRLQDA--QPRPPLAVTNAVSWRSEGIYYGKNEVFL 171 (424)
T ss_pred ccCCccceecchHHHHHHHHHHhccCCcccchHHHHHHHhcccccceeec--CCCCCcccccceeecccccccccceEEE
Confidence 34556666666679999999999999999999999999999986544321 2245777889999999999999999999
Q ss_pred EEEEEEEEEEcCCCcEEEEEEeEEEEEEEeecCCCeeEEeeccceeeeccCCCCCcCCCccccCCCCCCCCCCCeEEecc
Q psy2523 581 DVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDD 660 (691)
Q Consensus 581 Dv~E~i~~~~~~~G~vl~~~i~G~I~~~s~LsG~P~~~l~lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d 660 (691)
||+|+++++++++|.+++++|.|+|+|||||+|||+|+|||||+..++..| .++.+..+.++|
T Consensus 172 DViE~Vs~l~~~~G~vl~s~i~G~I~~k~~LsGmPelrl~ln~~~~~~~~~-----------------~~~~s~~v~led 234 (424)
T KOG0937|consen 172 DVIESVSLLYDSNGIVLLSEIVGTIKLKCYLSGMPELRLGLNDKVLFDKQG-----------------PRSKSKGVELED 234 (424)
T ss_pred EhhhhhhHhhhcCCcEEEeeeeeEEEEEEEcCCCceeeeecCccccccccc-----------------ccccCcceEeee
Confidence 999999999999999999999999999999999999999999998765432 122235689999
Q ss_pred ccCcccccCCCccccCcEEEeCCCCceEecC
Q psy2523 661 CQFHQCVKLSKFETEHSISFIPPDGEFELMR 691 (691)
Q Consensus 661 ~~FH~cV~l~~f~~~r~i~FiPPDG~F~Lm~ 691 (691)
++||+||++++|+.+|+|+|+||||+|+||+
T Consensus 235 i~fh~~v~l~~fd~dr~i~FiPPdGeF~Lm~ 265 (424)
T KOG0937|consen 235 IKFHECVRLSRFDNDRTISFIPPDGEFELMR 265 (424)
T ss_pred cccceeechhhccCCceEEecCCCCceEEEE
Confidence 9999999999999999999999999999996
No 8
>KOG2740|consensus
Probab=100.00 E-value=2.2e-38 Score=325.65 Aligned_cols=158 Identities=29% Similarity=0.590 Sum_probs=139.3
Q ss_pred EeeccccccCCccCCCcccccCCCcccccChHHHHHhhccccccccc-------cccccccccccccccccccCCccccc
Q psy2523 503 RKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQS-------KEEQSQITSQVTGQIGWRREGIKYRR 575 (691)
Q Consensus 503 r~e~~~k~~~~~~yelLdE~~D~G~pq~t~~~~Lk~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~WR~~~i~y~k 575 (691)
-.|..+|++...+|||||||+|+|||..||+++||++|.+++..++. ...+.++|..+.+.+|||+++.||.+
T Consensus 98 ~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~pps~l~~~~~svTg~~n~~~~lPtg~~s~VPWR~~~~Ky~n 177 (418)
T KOG2740|consen 98 LSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIPPPSFLSKKFNSVTGNSNVSDTLPTGALSNVPWRTAGVKYTN 177 (418)
T ss_pred cCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcCChHHHHHHHhhhhccccccccCCCcccccccccccCccccc
Confidence 33444566777999999999999999999999999999998876631 12334566666678999999999999
Q ss_pred ceEEEEEEEEEEEEEcCCCcEEEEEEeEEEEEEEeecCCCeeEEeeccceeeeccCCCCCcCCCccccCCCCCCCCCCCe
Q psy2523 576 NELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPV 655 (691)
Q Consensus 576 NEi~vDv~E~i~~~~~~~G~vl~~~i~G~I~~~s~LsG~P~~~l~lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (691)
||.||||+|+++++++++|+.+.++|.|.|+|+|+|||||++.|.|+..
T Consensus 178 NE~yvdvlEeidai~~k~gslv~~eI~g~vd~~~qLsgmPdltlsl~np------------------------------- 226 (418)
T KOG2740|consen 178 NEAYVDVLEEIDAIVDKKGSLVFGEIQGIVDVCSQLSGMPDLTLSLNNP------------------------------- 226 (418)
T ss_pred chhhhhhhheeheEecCCCCEEEEEEEEEEEEEEeecCCCceEEEccCc-------------------------------
Confidence 9999999999999999999999999999999999999999999999741
Q ss_pred EEeccccCcccccCCCccccCcEEEeCCCCceEecC
Q psy2523 656 VVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691 (691)
Q Consensus 656 ~~l~d~~FH~cV~l~~f~~~r~i~FiPPDG~F~Lm~ 691 (691)
-.|+|++||+||++.+|+++++|+||||||+|+||+
T Consensus 227 ~~L~dvsfHpcVr~krwe~~~~lsFIPPDGkFrLls 262 (418)
T KOG2740|consen 227 RLLGDVSFHPCVRYKRWESHSVLSFIPPDGKFRLLS 262 (418)
T ss_pred cccCCcccccceeecccccccceEEcCCCCcEEEEE
Confidence 258999999999999999999999999999999984
No 9
>KOG2677|consensus
Probab=100.00 E-value=7.2e-38 Score=338.48 Aligned_cols=307 Identities=27% Similarity=0.437 Sum_probs=246.3
Q ss_pred cccccc--cccCCCCCCCccccccCCccCCCCchhhhhhhcccCccccccccccccccccccccccccCCcccccceEEE
Q psy2523 157 RKENTY--KSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFL 234 (691)
Q Consensus 157 ~ke~~~--~~~~~~~~~~~~E~~d~G~p~~~~~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~i~y~kNEI~v 234 (691)
+||+.. -.....|.++++.++++|. ++...+.+||++.. +....++.. |.....|..+||.|
T Consensus 528 YkEK~ky~pk~~v~H~a~~eq~lKlGs---tny~dfl~FittVe------d~Lmklpv~-------s~~k~nY~e~EI~v 591 (922)
T KOG2677|consen 528 YKEKKKYQPKPAVAHTAEREQVLKLGS---TNYDDFLSFITTVE------DRLMKLPVL-------SMDKSNYLEEEITV 591 (922)
T ss_pred eehhcccCCCCccccchhhhhhhhccC---CcHHHHHHHHHHHH------HHHhcCccc-------cccccccccceeEE
Confidence 455442 3344688999999999994 56677888876521 011112211 12223699999999
Q ss_pred EEEEEEEEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhccCCCCCCCCCccccCCCCCCCCCCCeeeecc
Q psy2523 235 DVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDD 314 (691)
Q Consensus 235 DVvE~v~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ldd 314 (691)
||.++.+++++++|+++...|..+|.|.|||+|.|+|.|||||.+..+++- +.+.|..++....||+|.+
T Consensus 592 ~~~Defsg~V~Keg~~~~~~v~tri~cL~FlsG~~ec~lgLND~~~kg~Ei----------v~rkDimp~~t~kwI~~~~ 661 (922)
T KOG2677|consen 592 DVRDEFSGIVSKEGQILQHHVLTRIHCLSFLSGLAECRLGLNDILVKGNEI----------VLRKDIMPTTTTKWIKLHE 661 (922)
T ss_pred EEEeccceeecccchhhhhhhhhhhhhhhhccCCceeEeecchhhhcccce----------eEeccccccccccceeeee
Confidence 999999999999999999999999999999999999999999998755542 3345777788899999999
Q ss_pred ccccccccccCcCccceEEEecCCC-ceEEEEEEecCC-CCCCeEEEEEEEecCCeEEEEEEEEe--ecc------Cccc
Q psy2523 315 CQFHQCVKLSKFETEHSISFIPPDG-EFELMRYRTTKD-IALPFRVIPLVREATRTKMEVKVVLK--SQF------KASL 384 (691)
Q Consensus 315 ~~FH~cV~l~~f~~~r~IsFiPPDG-~F~Lm~Yr~~~~-~~lPf~i~p~~~~~~~~~vei~l~l~--~~~------~~~~ 384 (691)
|.||.|||.+.|+++|+|.|.|||| .|+|||||+..+ ..+||+++..+.-. +.+||++.-++ +.+ ...+
T Consensus 662 ~~FH~cVn~~eF~~srVI~F~PlDaCrFElMRFrt~~~~~~lpftlks~~~V~-Ga~VEvq~~~~mat~~qr~rd~~~~v 740 (922)
T KOG2677|consen 662 CRFHGCVNEDEFHNSRVILFNPLDACRFELMRFRTVFAEKTLPFTLKSATSVN-GAEVEVQSWLRMATGFQRNRDPLTQV 740 (922)
T ss_pred eeeecccchhhccccceEEecCcccceeeeeeeeeecCCCcCceeeeeeeeec-cceeehHHHHHHHhhhhhccCccccC
Confidence 9999999999999999999999999 799999999864 57999999876544 46888875332 222 2456
Q ss_pred ccceEEEEEcCCCCCc--------------------------------ceEEEEeeeeEEEEccCCEEEEEEeEecCCc-
Q psy2523 385 LGQKIEVRIPTPLNTS--------------------------------GVQLICLKGKAKYKASENAIVWKIKRMAGMK- 431 (691)
Q Consensus 385 ~~~~V~I~iPlP~~~~--------------------------------~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~- 431 (691)
.|+||.|++|+|..|. .+.++++.|+|+|++..+.|+|+|++++.++
T Consensus 741 pCenI~IrfPVPs~WIk~fr~e~~~g~kSlkaK~nR~a~~gsl~~~~sepvi~vt~G~AKYEhay~siVWrI~RLPdKns 820 (922)
T KOG2677|consen 741 PCENIMIRFPVPSEWIKNFRRESVLGEKSLKAKVNRGASFGSLSVSGSEPVIRVTLGTAKYEHAYNSIVWRINRLPDKNS 820 (922)
T ss_pred cccceeEeccCcHHHHHHHHHHhhhccchhhhhhcccccccchhhccCCceEEEeecchhhHHhhhhheeecccCCcccc
Confidence 8999999999999762 1347899999999999999999999998875
Q ss_pred ----eeEEEEEEEEeecCCCCCCCCCCeEEEEEee-ccCCCcEEEEEEeeccCCCCCCCceeEEEEEEec
Q psy2523 432 ----ETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGR 496 (691)
Q Consensus 432 ----e~~l~~~~~l~~~~~~~~~~~~pi~v~F~ip-~t~SGl~V~~L~V~e~~~~~~~~~~~KwVRYiT~ 496 (691)
.+.|.|+++|.+......+-.+.+.|+|.+| .++|...||++.|.. ...+.|||+|..+
T Consensus 821 a~~hpHcl~c~lELgSd~evPs~f~p~~~V~FsmP~t~aS~t~VRSisVE~------~~~v~K~V~y~A~ 884 (922)
T KOG2677|consen 821 ASGHPHCLFCHLELGSDREVPSRFAPHVNVEFSMPTTSASKTSVRSISVED------KTDVRKWVNYSAH 884 (922)
T ss_pred ccCCCeeEEEEEeccccccCchhhccccceeeeccccccccceeeeeeccc------cccHHHHHhhhhh
Confidence 5789999999876544443356799999999 999999999999943 3579999999887
No 10
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents the C-terminal domain of the mu subunit from various clathrin adaptors (AP1, AP2 and AP3) []. The C-teminal domain has an immunoglobulin-like beta-sandwich fold consisting of 9 strands in 2 sheets with a Greek key topology, similar to that found in cytochrome f and certain transcription factors []. The mu subunit regulates the coupling of clathrin lattices with particular membrane proteins by self-phosphorylation via a mechanism that is still unclear []. The mu subunit possesses a highly conserved N-terminal domain of around 230 amino acids, which may be the region of interaction with other AP proteins; a linker region of between 10 and 42 amino acids; and a less well-conserved C-terminal domain of around 190 amino acids, which may be the site of specific interaction with the protein being transported in the vesicle []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1H6E_A 3L81_A 1W63_V 4EMZ_A 4EN2_A 2VGL_M 3ML6_F 2PR9_A 2JKT_M 1I31_A ....
Probab=99.93 E-value=2.6e-26 Score=239.61 Aligned_cols=104 Identities=51% Similarity=0.956 Sum_probs=88.6
Q ss_pred cccccCCcccccceEEEEEEEEEEEEEcCCCcEEEEEEeEEEEEEEeecCCCeeEEeeccceeeeccCCCCCcCCCcccc
Q psy2523 564 IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVA 643 (691)
Q Consensus 564 ~~WR~~~i~y~kNEi~vDv~E~i~~~~~~~G~vl~~~i~G~I~~~s~LsG~P~~~l~lnd~~~~~~~~~~~~~~~~~~~~ 643 (691)
+|||+.+++|++|||||||+|+|+++++++|.++.++|.|+|.|+|||+|+|+|+|+||+.+...
T Consensus 1 ~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~v~~~~~l~g~p~i~l~l~~~~~~~--------------- 65 (262)
T PF00928_consen 1 VPWRPSGIKYKKNEIFVDVVEKISAVLDRDGNILSSEVKGSVQCKSFLSGMPEIKLTLNNPLVVS--------------- 65 (262)
T ss_dssp -TTS-STB--SSEEEEEEEEEEEEEEEETTSEEEEEEEEEEEEEEEE-SST-EEEEEESSSCCCT---------------
T ss_pred CCcccCCcccccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeCCCCCeEEEEecCccccc---------------
Confidence 59999999999999999999999999999999999999999999999999999999999875431
Q ss_pred CCCCCCCCCCCeEEeccccCcccccCCCccccCcEEEeCCCCceEecC
Q psy2523 644 GGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691 (691)
Q Consensus 644 ~~~~~~~~~~~~~~l~d~~FH~cV~l~~f~~~r~i~FiPPDG~F~Lm~ 691 (691)
.+++.++||+||+||++++|+++|.|+|+||||+|+||+
T Consensus 66 ---------~~~~~l~~~~fH~cV~~~~~~~~~~i~f~PPdg~f~Ll~ 104 (262)
T PF00928_consen 66 ---------KNGIKLDDVSFHPCVDLSKFESDRVISFIPPDGEFTLLR 104 (262)
T ss_dssp ---------SSSBEESEEEEETTEECCCCCSHTEEEE---SEEEEEEE
T ss_pred ---------cCceeeeceeeccccCccccccccceecCCCCceEEEEE
Confidence 135789999999999999999999999999999999995
No 11
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=99.86 E-value=6.2e-21 Score=181.08 Aligned_cols=133 Identities=28% Similarity=0.531 Sum_probs=114.0
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCcchh---hHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDIGRN---AVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAM 77 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~~~~---~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~ 77 (691)
||++++|+|++|+++++|+|++..... ..+.+..... .+....+|++..++.+++|++.++|||+++++.+.|+++
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~ 79 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKS-SRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENELL 79 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHH-TSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBHHH
T ss_pred CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHH-hcccccceeeecccceeeeEeeccEEEEEEeecccchHH
Confidence 999999999999999999997665533 3333432322 344457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCccccccchhhhHHHhhhc
Q psy2523 78 VFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDR 157 (691)
Q Consensus 78 ~~e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~~~~~~~~~~~~~~~~~ 157 (691)
.+|+||.+.+++++||| +++|..|++||..+|++||
T Consensus 80 ~~e~l~~~v~~l~~~~~---------------------~v~e~~i~~N~~~v~~~LD----------------------- 115 (141)
T PF01217_consen 80 LLEFLHRLVEVLDDYFG---------------------NVSEKDILENFDLVYLILD----------------------- 115 (141)
T ss_dssp HHHHHHHHHHHHHHHHS---------------------S-SHHHHHHTHHHHHHHHH-----------------------
T ss_pred HHHHHHHhhhhhhhhhc---------------------cccHHHHHHCHHHHHHHHH-----------------------
Confidence 99999999999999999 8999999999999999999
Q ss_pred ccccccccCCCCCCCccccccCCccCCCCchhhhhhhc
Q psy2523 158 KENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFIL 195 (691)
Q Consensus 158 ke~~~~~~~~~~~~~~~E~~d~G~p~~~~~~~Lk~~i~ 195 (691)
|++|+|+|+.|+++.+...+.
T Consensus 116 -----------------Eiid~G~i~etd~~~I~~~v~ 136 (141)
T PF01217_consen 116 -----------------EIIDGGIILETDPNVILKRVT 136 (141)
T ss_dssp -----------------HHEETTEES--THHHHHHHHH
T ss_pred -----------------HHHhCCEEEECCHHHHHHHHH
Confidence 999999999999998877654
No 12
>KOG2677|consensus
Probab=99.77 E-value=8.9e-20 Score=198.81 Aligned_cols=147 Identities=29% Similarity=0.515 Sum_probs=123.2
Q ss_pred cccccCCCcccccChHHHHHhhccccccccccccccccccccccccccccCCcccccceEEEEEEEEEEEEEcCCCcEEE
Q psy2523 519 PSEILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLS 598 (691)
Q Consensus 519 LdE~~D~G~pq~t~~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~i~y~kNEi~vDv~E~i~~~~~~~G~vl~ 598 (691)
.+.|+.+| .|+...+..||+.-.- ...+++... ...-.|...||-|||.++...+++++|+++.
T Consensus 546 ~eq~lKlG---stny~dfl~FittVed------~Lmklpv~s-------~~k~nY~e~EI~v~~~Defsg~V~Keg~~~~ 609 (922)
T KOG2677|consen 546 REQVLKLG---STNYDDFLSFITTVED------RLMKLPVLS-------MDKSNYLEEEITVDVRDEFSGIVSKEGQILQ 609 (922)
T ss_pred hhhhhhcc---CCcHHHHHHHHHHHHH------HHhcCcccc-------ccccccccceeEEEEEeccceeecccchhhh
Confidence 45688999 8999999999976221 112222211 1222599999999999999999999999999
Q ss_pred EEEeEEEEEEEeecCCCeeEEeeccceeeeccCCCCCcCCCccccCCCCCCCCCCCeEEeccccCcccccCCCccccCcE
Q psy2523 599 AHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSI 678 (691)
Q Consensus 599 ~~i~G~I~~~s~LsG~P~~~l~lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FH~cV~l~~f~~~r~i 678 (691)
+.+..+|.|.|||+|+|+|+|||||.++. |++ .+.+.|.++...++||+|.+|.||.||+.++|+++|+|
T Consensus 610 ~~v~tri~cL~FlsG~~ec~lgLND~~~k---g~E-------iv~rkDimp~~t~kwI~~~~~~FH~cVn~~eF~~srVI 679 (922)
T KOG2677|consen 610 HHVLTRIHCLSFLSGLAECRLGLNDILVK---GNE-------IVLRKDIMPTTTTKWIKLHECRFHGCVNEDEFHNSRVI 679 (922)
T ss_pred hhhhhhhhhhhhccCCceeEeecchhhhc---ccc-------eeEeccccccccccceeeeeeeeecccchhhccccceE
Confidence 99999999999999999999999998763 332 24566778888899999999999999999999999999
Q ss_pred EEeCCCC-ceEecC
Q psy2523 679 SFIPPDG-EFELMR 691 (691)
Q Consensus 679 ~FiPPDG-~F~Lm~ 691 (691)
.|.|||| +|+|||
T Consensus 680 ~F~PlDaCrFElMR 693 (922)
T KOG2677|consen 680 LFNPLDACRFELMR 693 (922)
T ss_pred EecCcccceeeeee
Confidence 9999999 999997
No 13
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=99.43 E-value=6.3e-13 Score=121.05 Aligned_cols=115 Identities=17% Similarity=0.359 Sum_probs=100.7
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCcc---hhhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDIG---RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAM 77 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~~---~~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~ 77 (691)
||.+++|.|++|++++.|||..... ..++...+..+. +|...++.+++..+.+.+|.++++|||+.+.....|.+.
T Consensus 1 ~i~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs-~R~~ke~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnEl~ 79 (152)
T COG5030 1 MIKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELIS-ARKPKESNFIEGKNEKIVYRRYATLYFVFGVDNDDNELI 79 (152)
T ss_pred CeEEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHH-cCCchhcccccccCcEEEeeecCcEEEEEEEcCCCCcch
Confidence 8999999999999999999976433 234555554444 566678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccc
Q psy2523 78 VFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRY 137 (691)
Q Consensus 78 ~~e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~ 137 (691)
+|+.+|.|++++..||| +++|-.+.-||--+|.+|||.+
T Consensus 80 iL~lIh~FVE~lDr~Fg---------------------nVCELdlIFNF~kv~~ILdE~i 118 (152)
T COG5030 80 ILELIHNFVEILDRFFG---------------------NVCELDLIFNFQKVYAILDEMI 118 (152)
T ss_pred HHHHHHHHHHHHHHHhc---------------------cceeeEeEeeHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999533
No 14
>KOG0934|consensus
Probab=99.36 E-value=6.7e-13 Score=120.77 Aligned_cols=120 Identities=21% Similarity=0.366 Sum_probs=102.4
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCcc--hhhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDIG--RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMV 78 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~~--~~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~ 78 (691)
||.++...++.|++++++||..... |..++.=....+-+|...++.+++..+...||.++++||+++....+.|.|.+
T Consensus 1 mi~f~LlvsrQGk~rL~k~y~~~~~~er~~i~re~i~~~Lar~pk~csfie~kd~kvVyrryasl~f~~~v~~~dNEL~~ 80 (145)
T KOG0934|consen 1 MIKFFLLVSRQGKTRLQKWYEALSIKERKKIERELIKSVLARKPKMCSFIEYKDEKVVYRRYASLFFCVGVEDNDNELAI 80 (145)
T ss_pred CeEEEEEEeccCceehhHHHhhhcHHHHHHHHHHHHHHHHhCCcccccchhccCceehhhhhhhEEEEEEEecCCchhhH
Confidence 8999999999999999999987543 33333322233335666788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCcc
Q psy2523 79 FEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGME 141 (691)
Q Consensus 79 ~e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~ 141 (691)
+|++|++++++..||| +++|-+|.-||.-.|.+|||-.+|++
T Consensus 81 LE~IH~~vE~lDkYFg---------------------~VCELDiiFNfekay~ILde~~~~g~ 122 (145)
T KOG0934|consen 81 LEFIHNYVELLDKYFG---------------------SVCELDIIFNFEKAYFILDEFLLGGE 122 (145)
T ss_pred HHHHHHHHHHHHHHhc---------------------cceeeEEEEehHhHHHHHHHHhcCcc
Confidence 9999999999999999 99999999999999999997555544
No 15
>KOG0935|consensus
Probab=99.16 E-value=1.1e-10 Score=103.81 Aligned_cols=119 Identities=16% Similarity=0.349 Sum_probs=94.7
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCcc--hh-hHHHHHHhhccccCCCCCCeEE-eCCEEEEEEeeCcEEEEEEEcCCcCHH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDIG--RN-AVDAFRVNVIHARQQVRSPVTN-IARTSFFHIKRANIWLAAVTKQNVNAA 76 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~~--~~-~~~~f~~~~~~~~~~~~~pi~~-~~~~~~v~~~~~~l~lv~vt~~~~n~~ 76 (691)
||..|.|.|+.|+++++|||...-. +. +.+... +++..|++.....+. -..-..+++++++|||+.......|.+
T Consensus 1 mi~FILiqNr~Gk~RLak~yv~~dd~ek~~~~~~vh-~lvs~Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDnel 79 (143)
T KOG0935|consen 1 MIRFILIQNRAGKTRLAKWYVQFDDDEKQKLIEEVH-ALVTVRDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDNEL 79 (143)
T ss_pred CeEEEEEEccccceeheeeeeccCchHHHHHHHHHH-HHHhhccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCchH
Confidence 8999999999999999999975332 32 334443 455455554444444 344444556999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCcc
Q psy2523 77 MVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGME 141 (691)
Q Consensus 77 ~~~e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~ 141 (691)
..+|-+|.|+++|.+||| +++|-++.-||--+|-++||..+|+|
T Consensus 80 ayLe~IHlFVEvLd~fF~---------------------NVCELDlvFNFyKVy~i~DEm~l~GE 123 (143)
T KOG0935|consen 80 AYLEHIHLFVEVLDEFFH---------------------NVCELDLVFNFYKVYTIVDEMFLAGE 123 (143)
T ss_pred HHHHHHHHHHHHHHHHhc---------------------cccceeeeeeeeeHHHHHHHHHHhhh
Confidence 999999999999999999 99999999999999999997666655
No 16
>KOG0936|consensus
Probab=99.08 E-value=4.1e-10 Score=104.03 Aligned_cols=113 Identities=13% Similarity=0.259 Sum_probs=95.4
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCcc---hhhHHHHHHhhccccCCCCCCeEEe------CCEEEEEEeeCcEEEEEEEcC
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDIG---RNAVDAFRVNVIHARQQVRSPVTNI------ARTSFFHIKRANIWLAAVTKQ 71 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~~---~~~~~~f~~~~~~~~~~~~~pi~~~------~~~~~v~~~~~~l~lv~vt~~ 71 (691)
||.|++|.|.+|++++.|.|..... +..++.-+..+ .+|+...+.+++. ++.+.+|++++-||||.+.++
T Consensus 1 MI~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lv-s~R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvvD~ 79 (182)
T KOG0936|consen 1 MIKAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLV-SKRPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVVDS 79 (182)
T ss_pred CeeEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHH-HcCCchHhhhhccccccCCccceeehheeeeEEEEEEEcC
Confidence 9999999999999999999986533 33444433333 3565556666553 478999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcc
Q psy2523 72 NVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDD 135 (691)
Q Consensus 72 ~~n~~~~~e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde 135 (691)
..+.+.+|++++-|++.|...|. .++|-++..|+..++.+|+|
T Consensus 80 sEsEL~iLDLIQvfVEtLDkCF~---------------------nVcELDliF~~~k~h~iL~E 122 (182)
T KOG0936|consen 80 SESELGILDLIQVFVETLDKCFE---------------------NVCELDLIFNWQKVHAILAE 122 (182)
T ss_pred CcchhHHHHHHHHHHHHHHHHHH---------------------hhhhhhheeeHHHHHHHHHH
Confidence 99999999999999999999998 89999999999999999994
No 17
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans.This C-terminal domain is structurally similar to mu homology domains, and is the region of the muniscin proteins involved in the interactions with the endocytic adaptor-scaffold proteins Ede1-eps15. This interaction influences muniscin localisation. The muniscins provide a combined adaptor-membrane-tubulation activity that is important for regulating endocytosis.; PDB: 3G9H_A.
Probab=98.77 E-value=7.4e-07 Score=93.02 Aligned_cols=230 Identities=18% Similarity=0.259 Sum_probs=118.0
Q ss_pred EEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEecCC-------CCeEEEEecccchhhccCCCCCCCCCccccCCCCCCC
Q psy2523 232 LFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSG-------MPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGR 304 (691)
Q Consensus 232 I~vDVvE~v~~i~~~~G~i~~~~V~G~I~~ks~LsG-------~P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (691)
+-..|.|.|||.+.. |.+.++.|.|+|.+ +|..| .+.+.+.|+..-.++.
T Consensus 3 l~asi~E~VnA~Fk~-g~~~~v~v~GEv~l-s~~~~~~~~~~~~~~l~~rl~n~~~le~--------------------- 59 (257)
T PF10291_consen 3 LNASITETVNAYFKG-GQLSKVKVTGEVAL-SYPAGISSSLTSPPPLSFRLNNFSRLEK--------------------- 59 (257)
T ss_dssp EEEEEEEEEEEEEET-TEEEEEEEEEEEEE-EEE--SSS-----SEEEEEEETGGGEEE---------------------
T ss_pred eeEEEEEEEEEEEEC-CcEEEEEEEEEEEE-ecCCChhhcccCCCcEEEEEcCcchhce---------------------
Confidence 456789999999965 78999999999999 45433 3456777764322211
Q ss_pred CCCCeeeeccccccccccccCcCccceEEEecCC--Cce--EEEEEEecCC----CCCCeEEEEEEE-ecCCeEEEEEEE
Q psy2523 305 SGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPD--GEF--ELMRYRTTKD----IALPFRVIPLVR-EATRTKMEVKVV 375 (691)
Q Consensus 305 ~~~~~i~ldd~~FH~cV~l~~f~~~r~IsFiPPD--G~F--~Lm~Yr~~~~----~~lPf~i~p~~~-~~~~~~vei~l~ 375 (691)
+.-.+..=...-.++....|.++- ... ..|+|++... ...|+.+.|.-. +.....+-+.++
T Consensus 60 ----------i~pN~~~v~~~~~~~~~f~~n~~~l~~~~~~~alKYqv~~~~~~~~~~Pl~l~~~Wk~e~~~tsl~l~Y~ 129 (257)
T PF10291_consen 60 ----------IAPNPQFVSSSSQSDGEFWLNMSALTSHLPKQALKYQVHSDPSNLSSVPLILKPVWKCEPSQTSLILDYK 129 (257)
T ss_dssp ----------EEE-TTTE--EEEETTEEEE-TTTTBT-E-EEEEEEEEES--------SEEEEEEEEE-SSEEEEEEEEE
T ss_pred ----------eecCHhHeecCCCCCCcEEEehHHhhhhhhhceEEEEEeccccccCCCCeEEEeEEEeCCceEEEEEEEE
Confidence 111110000000011122332221 222 4599999863 468999987644 222334444444
Q ss_pred Eee-ccCcccccceEEEEEcCCCC-CcceEEEEeeeeEEEEccCCEEEEEEeEec--CCce-eEEEEEEEEeecCCCCCC
Q psy2523 376 LKS-QFKASLLGQKIEVRIPTPLN-TSGVQLICLKGKAKYKASENAIVWKIKRMA--GMKE-TQLSAEIELLETDTKKKW 450 (691)
Q Consensus 376 l~~-~~~~~~~~~~V~I~iPlP~~-~~~~~~~~s~G~~~y~~~~~~l~W~I~kl~--g~~e-~~l~~~~~l~~~~~~~~~ 450 (691)
+.. .+......+||.|..|+... ++++...+. +.|..+++.+.|+|+.+. ++.+ ..|.|+|...... .
T Consensus 130 ~Np~~~~~~~~L~nv~~~v~l~g~~~ts~~skP~---g~~~~e~~ri~Wrl~el~~~~~~~~~kL~ARf~~~~~~---~- 202 (257)
T PF10291_consen 130 LNPDAFASPVPLENVVFSVPLDGGRATSAQSKPQ---GTWNKEKNRITWRLPELSLTSEGEGGKLIARFMTSGGP---S- 202 (257)
T ss_dssp E-TTT--E-EEEEEEEEEEEB-SS-EEEEEESSS-----B-SSS-EEEEE-SSEEEETT---EEEEEEEEESS-------
T ss_pred eChhhccccceeeeEEEEEEcCCccccccccCCC---ccccCCCcEEEEECCcccccCCCCCceEEEEEECCCCC---C-
Confidence 444 34444568999999999887 555543333 579999999999999865 3333 7899999874321 1
Q ss_pred CCCCeEEEEEee--ccCCCcEEEEEEeecc-CCCCCCCceeEEEEEEecCCceeE
Q psy2523 451 TRPPISMNFEVP--FAPSGFKVRYLKVFEP-KLNYSDHDVIKWVRYIGRSGLYET 502 (691)
Q Consensus 451 ~~~pi~v~F~ip--~t~SGl~V~~L~V~e~-~~~~~~~~~~KwVRYiT~Sg~Y~~ 502 (691)
.-++|.++|++. .+.||+.|.-+.-.+. ......|+.. =++....||.|..
T Consensus 203 ~p~~v~vkF~~~~~~~~sg~~i~~~~~~~~~dp~~~~w~~~-~~~r~~~sGkY~~ 256 (257)
T PF10291_consen 203 RPGGVEVKFEIEGGSTLSGLGISLVYQDDEEDPPGGGWRLV-LVKRKLVSGKYIA 256 (257)
T ss_dssp -SS-EEEEEEE---S-SS----EEEEEESSS-TT----EE--EEEEEEEEEEEE-
T ss_pred CCceEEEEEEEcCCCcccCcEEEEeecccccCCCCCcceEE-EEEEEEeeeEEec
Confidence 456899999998 7799998887722111 1001223332 2555556788853
No 18
>KOG3343|consensus
Probab=98.74 E-value=8.8e-08 Score=89.70 Aligned_cols=133 Identities=17% Similarity=0.319 Sum_probs=116.7
Q ss_pred eEEEEEEeCCCCEEEEEcccCCcch--hhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHH
Q psy2523 2 IGGLFVYNHKGEVLISRVYRDDIGR--NAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVF 79 (691)
Q Consensus 2 i~~i~I~~~~G~~li~r~y~~~~~~--~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~ 79 (691)
+.+++|+|..|+.++.|+|.+..+. ..-.+|...+..+.+....-|...+|...||...-+|+|-.+-..+.|.++..
T Consensus 9 vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT~kt~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENEl~L~ 88 (175)
T KOG3343|consen 9 VKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKTSKTESEILLLDGNTVVYKSVIDLHFYVVGSEEENELMLM 88 (175)
T ss_pred hheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhcccccccceeEEecCcEEEEEecccEEEEEecCcchhHHHHH
Confidence 5789999999999999999988664 34567888877655456778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCccccccchhhhHHHhhhccc
Q psy2523 80 EFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKE 159 (691)
Q Consensus 80 e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~~~~~~~~~~~~~~~~~ke 159 (691)
+.|+-|.+.+.-.+.+ .+....+.+|+.+|+-.+|
T Consensus 89 svL~~l~dal~llLr~--------------------nveKr~llEN~D~i~L~~D------------------------- 123 (175)
T KOG3343|consen 89 SVLTCLFDALSLLLRK--------------------NVEKRELLENLDLIFLALD------------------------- 123 (175)
T ss_pred HHHHHHHHHHHHHHHh--------------------ChhHHHHHhhhccceeehh-------------------------
Confidence 9999999999999884 7888999999999999999
Q ss_pred ccccccCCCCCCCccccccCCccCCCCchhhhhhh
Q psy2523 160 NTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFI 194 (691)
Q Consensus 160 ~~~~~~~~~~~~~~~E~~d~G~p~~~~~~~Lk~~i 194 (691)
|++|.|....++++.+-.-+
T Consensus 124 ---------------EiiD~GvILEtdp~~ia~rv 143 (175)
T KOG3343|consen 124 ---------------EIIDGGVILETDPNQIAQRV 143 (175)
T ss_pred ---------------hhccCceEEecCHHHHHHHh
Confidence 89999999999988765544
No 19
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0021 Score=60.43 Aligned_cols=113 Identities=13% Similarity=0.198 Sum_probs=90.2
Q ss_pred eEEEEEEeCCCCEEEEEcccCCcc-h------h---hHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcC
Q psy2523 2 IGGLFVYNHKGEVLISRVYRDDIG-R------N---AVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQ 71 (691)
Q Consensus 2 i~~i~I~~~~G~~li~r~y~~~~~-~------~---~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~ 71 (691)
+.|++|+|+.|+.|..|+|..--. + + --+.|..++..+....+..|...++.-.++.+..++.|..+..-
T Consensus 8 v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~~~~Il~f~d~lV~~k~~~dv~~yiv~~m 87 (187)
T COG5541 8 VEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKDRESILMFYDRLVMCKRLDDVLLYIVSPM 87 (187)
T ss_pred eeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcCccceeeEcceeeeeeeehhEEEEEeccc
Confidence 579999999999999999975322 1 1 12456666654433467889999999999999999999999988
Q ss_pred CcCHHHHHHHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhc
Q psy2523 72 NVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLD 134 (691)
Q Consensus 72 ~~n~~~~~e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~lld 134 (691)
+.|..+.-+.+..|...+.-.+.. ..++..+.+|+..|.-+.|
T Consensus 88 eeNE~~l~q~f~~ir~Al~li~k~--------------------~~dkr~v~enYDqivl~vd 130 (187)
T COG5541 88 EENEPFLGQVFDEIRAALILIVKT--------------------PTDKRNVWENYDQIVLLVD 130 (187)
T ss_pred ccccHHHHHHHHHHHHHHHHHHcC--------------------CcchhhHHhhhceEEEeee
Confidence 999999999999999888888872 5677889999997776788
No 20
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=96.02 E-value=0.00061 Score=64.66 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=29.0
Q ss_pred eccccccCCccCCCcccccCCCcccccChHHHHHhhcc
Q psy2523 505 ENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQ 542 (691)
Q Consensus 505 e~~~k~~~~~~yelLdE~~D~G~pq~t~~~~Lk~~i~~ 542 (691)
|..+..++..+|++||||+|+|+|+.||++.+.+.+..
T Consensus 100 e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~ 137 (141)
T PF01217_consen 100 EKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTM 137 (141)
T ss_dssp HHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHH
Confidence 33444445589999999999999999999999888754
No 21
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=90.43 E-value=2.3 Score=47.83 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=60.6
Q ss_pred EEEEEEeCCCCEEEEEcccCCcc---hhhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHH
Q psy2523 3 GGLFVYNHKGEVLISRVYRDDIG---RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVF 79 (691)
Q Consensus 3 ~~i~I~~~~G~~li~r~y~~~~~---~~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~ 79 (691)
+.+||++.-||++.+|+=.++.- .+++.++..-+. . .++.---+..++++++...++-||||||++....+....
T Consensus 12 kh~fIlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~-~-~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~ 89 (415)
T PF03164_consen 12 KHFFILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQ-S-NGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLR 89 (415)
T ss_pred CeEEEECCCCceeEEecCChHHHHHHHHHHHHHHHHHH-h-CCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHH
Confidence 46899999999999998443321 344444432221 1 122233567899999999999999999999988876666
Q ss_pred HHHHHHHHHHhhcc
Q psy2523 80 EFLLKFIDVMQSYF 93 (691)
Q Consensus 80 e~L~~~~~~l~~y~ 93 (691)
.-|..+...|-..+
T Consensus 90 ~qL~~ly~qils~l 103 (415)
T PF03164_consen 90 KQLDYLYSQILSIL 103 (415)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666555554433
No 22
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=87.94 E-value=7.1 Score=35.42 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=58.7
Q ss_pred eEEEEEEeCCCCEEEEEcccCCcch----------hh---HHHHHHhhccccCCCCCC--eEEeC-CEEEEEEeeCcEEE
Q psy2523 2 IGGLFVYNHKGEVLISRVYRDDIGR----------NA---VDAFRVNVIHARQQVRSP--VTNIA-RTSFFHIKRANIWL 65 (691)
Q Consensus 2 i~~i~I~~~~G~~li~r~y~~~~~~----------~~---~~~f~~~~~~~~~~~~~p--i~~~~-~~~~v~~~~~~l~l 65 (691)
+.++||+|+.|-.+.+|.|.++-++ +. +-+...+++... + .++ ++..+ .+-++++..-++-|
T Consensus 3 ve~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~-g-ssg~~~l~~~~f~m~I~qT~TG~kF 80 (134)
T COG5122 3 VEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLP-G-SSGRLVLYFRNFVMTIFQTTTGTKF 80 (134)
T ss_pred eeEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCC-C-CCceEEEEeccEEEEEEEecCCcEE
Confidence 5789999999999999999654331 11 111222222110 1 122 23333 35568889999999
Q ss_pred EEEE-cCCcCHHHHHHHHHHHHHHHhhcccc
Q psy2523 66 AAVT-KQNVNAAMVFEFLLKFIDVMQSYFGK 95 (691)
Q Consensus 66 v~vt-~~~~n~~~~~e~L~~~~~~l~~y~~~ 95 (691)
|+++ ++.+|++.. |+++..+-.+|.-+
T Consensus 81 V~~~~k~t~na~~q---l~kiY~lYsdYV~k 108 (134)
T COG5122 81 VFVAEKRTVNALFQ---LQKIYSLYSDYVTK 108 (134)
T ss_pred EEEecCCchhHHHH---HHHHHHHHHHHhhc
Confidence 9999 677788765 78899998888864
No 23
>KOG2635|consensus
Probab=86.89 E-value=1.7 Score=47.95 Aligned_cols=85 Identities=15% Similarity=0.227 Sum_probs=61.0
Q ss_pred ccceEEEEEEEEEEEEEcCCCcEEEEEEeEEEEEEEeecCCCeeEEeeccceeeeccCCCCCcCCCccccCCCCCCCCCC
Q psy2523 574 RRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGK 653 (691)
Q Consensus 574 ~kNEi~vDv~E~i~~~~~~~G~vl~~~i~G~I~~~s~LsG~P~~~l~lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (691)
.+|-+++-+-|+|++.++++|.+-+.++.|.+.++--=.-.-.+.|.|++. ++
T Consensus 273 ~~e~v~i~ieEkln~~~~RDGgi~s~E~qG~lsLrI~d~e~~~i~lkl~n~---------------------~~------ 325 (512)
T KOG2635|consen 273 PEESVHIVIEEKLNVRLSRDGGIKSGEVQGTLSLRIKDEEYGDIELKLANG---------------------RD------ 325 (512)
T ss_pred ccceEEEEEeeeEeEEEcccCCccceeeeeeEEEEEccccccceEEEEcCC---------------------CC------
Confidence 355599999999999999999999999999886553211122333333320 00
Q ss_pred CeEEeccccCcccccCCCccccCcEEEeCCCCceE
Q psy2523 654 PVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFE 688 (691)
Q Consensus 654 ~~~~l~d~~FH~cV~l~~f~~~r~i~FiPPDG~F~ 688 (691)
+.+ +.++||-+|-+.|.+..+|...+|+--|-
T Consensus 326 ~g~---q~ktHPNlDK~~f~s~s~iglk~~~K~FP 357 (512)
T KOG2635|consen 326 KGT---QLKTHPNLDKKVFLSSSLIGLKRPEKPFP 357 (512)
T ss_pred cce---eeeeCCCcchhhhccccccccccCCCCCC
Confidence 011 36899999999999999999999986653
No 24
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=86.79 E-value=4.4 Score=37.50 Aligned_cols=90 Identities=6% Similarity=0.170 Sum_probs=61.1
Q ss_pred eEEEEEEeCCCCEEEEEcccCCcchhhHHH----HHHhhc--cc--cCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCc
Q psy2523 2 IGGLFVYNHKGEVLISRVYRDDIGRNAVDA----FRVNVI--HA--RQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNV 73 (691)
Q Consensus 2 i~~i~I~~~~G~~li~r~y~~~~~~~~~~~----f~~~~~--~~--~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~ 73 (691)
+.+|+|.|+.|=+++.-...+......-.. |-...- ++ -.....-+...++...++.....||+..+++.+.
T Consensus 17 l~~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~tf~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ias~~a 96 (119)
T PF08923_consen 17 LQAIVITDRDGVPIAKVSSDSAPESAMRPSLLSTFAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFIASSNA 96 (119)
T ss_dssp EEEEEEEETTS-EEEEEE-TTS-GGGGSHHHHCCHHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCcchhhhhHHHHHHHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEEecCCC
Confidence 579999999999998855554422111122 311110 00 0113445667899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhh
Q psy2523 74 NAAMVFEFLLKFIDVMQS 91 (691)
Q Consensus 74 n~~~~~e~L~~~~~~l~~ 91 (691)
|.-.++.+-..+..++.+
T Consensus 97 N~G~il~l~~~L~~~l~~ 114 (119)
T PF08923_consen 97 NTGLILSLEEELAPILNE 114 (119)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhHHHHHHHHHH
Confidence 999999999998888875
No 25
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=82.69 E-value=15 Score=34.98 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=54.3
Q ss_pred eEEEEEEeCCCCEEEEEcccCCc-------ch-------h---hHHHHHHhhccccCC----CCCC--eEEeCCEEE-EE
Q psy2523 2 IGGLFVYNHKGEVLISRVYRDDI-------GR-------N---AVDAFRVNVIHARQQ----VRSP--VTNIARTSF-FH 57 (691)
Q Consensus 2 i~~i~I~~~~G~~li~r~y~~~~-------~~-------~---~~~~f~~~~~~~~~~----~~~p--i~~~~~~~~-v~ 57 (691)
|.+|+|+|+.|..+.+|.|.... .. + .+.+|-.++...... .... .++++..++ ++
T Consensus 1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~ 80 (142)
T PF04099_consen 1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF 80 (142)
T ss_dssp EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence 68999999999999999997643 11 1 123343444321000 0111 344555544 55
Q ss_pred EeeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHhhccc
Q psy2523 58 IKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFG 94 (691)
Q Consensus 58 ~~~~~l~lv~vt~~~~n~~~~~e~L~~~~~~l~~y~~ 94 (691)
...-++.||++|+.+...+.. ++++.+.++.-+|.-
T Consensus 81 eT~TGlKFvl~td~~~~~~~~-~l~~~~~~lY~dyV~ 116 (142)
T PF04099_consen 81 ETPTGLKFVLITDPNVPSLRD-ELLRIYYELYVDYVV 116 (142)
T ss_dssp E-TTS-EEEEEE-TTCCHCHH-HHHHHHHHHHHHHHH
T ss_pred EcCcCcEEEEEecCCCccHHH-HHHHHHHHHHHHHHh
Confidence 778899999999999865433 478888888888875
No 26
>KOG0781|consensus
Probab=71.77 E-value=32 Score=39.10 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=80.0
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCcchhhHHHHHHhhccc-cCCCCCCeEEeCCEEEEEEeeC--cEEEEEEEcCCcCHHH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHA-RQQVRSPVTNIARTSFFHIKRA--NIWLAAVTKQNVNAAM 77 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~~~~~~~~f~~~~~~~-~~~~~~pi~~~~~~~~v~~~~~--~l~lv~vt~~~~n~~~ 77 (691)
||..+.|.++.|-+|-..+=-+....+-+..|...++-. +..... +..+..+.=|+..+ ++.||++-.+-.+-..
T Consensus 1 Mld~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er~~~~~--~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~y 78 (587)
T KOG0781|consen 1 MLDQFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSERGGVNS--FTFEAYTLKYQLDNQYSLVFVVVFQKILTLTY 78 (587)
T ss_pred CcceeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhhcCccc--CchhheeEeeeecCCccEEEEEEEeccchhhh
Confidence 999999999999999877665554455566665555533 322222 55666666666666 5677777777766666
Q ss_pred HHHHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHH-HHHHHhcccccCcc
Q psy2523 78 VFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFV-LIYELLDDRYLGME 141 (691)
Q Consensus 78 ~~e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~-~i~~llde~~~g~~ 141 (691)
+-.+|....+.+.+-+. ..+-..++.|++ .-.++|+++--+-|
T Consensus 79 v~~ll~~v~~~f~e~~~---------------------~~~~~~l~~n~~~~~~e~lk~rq~~ne 122 (587)
T KOG0781|consen 79 VDKLLNDVLNLFREKYD---------------------TQSALSLLNNTFDFQEELLKLRQVANE 122 (587)
T ss_pred HHHHHHHHHHHHHHHhc---------------------cchHHHhhhhhHHHHHHHHHHhhcccc
Confidence 66777777777776665 566778888976 55688876443433
No 27
>KOG0997|consensus
Probab=68.77 E-value=28 Score=39.39 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=55.8
Q ss_pred EEEEEeCCCCEEEEEcccCCcc---hhhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHHH
Q psy2523 4 GLFVYNHKGEVLISRVYRDDIG---RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFE 80 (691)
Q Consensus 4 ~i~I~~~~G~~li~r~y~~~~~---~~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~e 80 (691)
.+||+..-|+++.+|+-.++.- .++.++.. ..... .+..-..+..+|.+++....+-|+|||+++.+..+.+.+.
T Consensus 119 hifilseaGKPiyS~~gs~e~l~stmGv~~alI-Sf~q~-~~~~i~si~a~g~k~vfl~kspl~LvA~s~t~~Sa~qL~~ 196 (523)
T KOG0997|consen 119 HIFILSEAGKPIYSRHGSDEALSSTMGVMQALI-SFFQV-SGLAITSIHAFGNKLVFLQKSPLLLVAVSRTSQSAAQLLQ 196 (523)
T ss_pred eEEEEecCCCceeeecCcHHHHHHHHHHHHHHH-HHHhh-CCceEEEEEecCceEEEEecCcEEEEEEcccccCHHHHHH
Confidence 5899999999999999876533 45554432 21211 1234456788999999999999999999998887766544
Q ss_pred HH
Q psy2523 81 FL 82 (691)
Q Consensus 81 ~L 82 (691)
=|
T Consensus 197 qL 198 (523)
T KOG0997|consen 197 QL 198 (523)
T ss_pred HH
Confidence 33
No 28
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=67.54 E-value=30 Score=29.30 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=42.6
Q ss_pred CCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHhhccc
Q psy2523 45 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFG 94 (691)
Q Consensus 45 ~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~e~L~~~~~~l~~y~~ 94 (691)
.-.++.++..|-+...++|.++|+|.+.-..-..+.||..+.+-...-++
T Consensus 16 k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~ 65 (83)
T PF13774_consen 16 KMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYG 65 (83)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT
T ss_pred eEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcC
Confidence 34667888888887899999999999999999999999999988887766
No 29
>KOG3368|consensus
Probab=52.72 E-value=1.9e+02 Score=27.36 Aligned_cols=89 Identities=10% Similarity=0.205 Sum_probs=52.5
Q ss_pred eEEEEEEeCCCCEEEEEcccCCcchh---------------hHHHHHHhhccccCCCCCCeEEe--CCEEEE-EEeeCcE
Q psy2523 2 IGGLFVYNHKGEVLISRVYRDDIGRN---------------AVDAFRVNVIHARQQVRSPVTNI--ARTSFF-HIKRANI 63 (691)
Q Consensus 2 i~~i~I~~~~G~~li~r~y~~~~~~~---------------~~~~f~~~~~~~~~~~~~pi~~~--~~~~~v-~~~~~~l 63 (691)
|.+++|.|++|..|..+.|......+ .+..|-.++-. .....-+... ...+.- |-.-.+|
T Consensus 3 iy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~--~d~k~~f~sy~Ts~YklhfyeTptgl 80 (140)
T KOG3368|consen 3 IYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSP--GDVKDGFLSYKTSKYKLHFYETPTGL 80 (140)
T ss_pred EEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCC--CCcccCeeEEeeceeEEEEEEcCCCc
Confidence 78999999999999999886432211 12334333321 1112223333 333222 2334589
Q ss_pred EEEEEEcCCcCHHHHHHHHHHHHH-HHhhccc
Q psy2523 64 WLAAVTKQNVNAAMVFEFLLKFID-VMQSYFG 94 (691)
Q Consensus 64 ~lv~vt~~~~n~~~~~e~L~~~~~-~l~~y~~ 94 (691)
+||+.|+-+... +-+.||.+.. +--+|..
T Consensus 81 k~vl~Tdpk~~~--ir~vLq~IYs~lyVE~Vv 110 (140)
T KOG3368|consen 81 KFVLNTDPKAGS--IRDVLQYIYSHLYVEYVV 110 (140)
T ss_pred EEEEecCCCccc--HHHHHHHHHHHHHHHHHH
Confidence 999999766544 5678888888 5555554
No 30
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=46.52 E-value=1.5e+02 Score=28.20 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=37.0
Q ss_pred CeEEEEEEeCCCCEEEEEcccCC-cchhhHHHHHHhhccccC---C--CCCCeEEe-------CCEEE-EEE-eeCcEEE
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDD-IGRNAVDAFRVNVIHARQ---Q--VRSPVTNI-------ARTSF-FHI-KRANIWL 65 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~-~~~~~~~~f~~~~~~~~~---~--~~~pi~~~-------~~~~~-v~~-~~~~l~l 65 (691)
||..+-|.+..|++|..-.=-+- ....-+-+|..++|.... + ...-+..+ ++..+ +|+ +.+.||+
T Consensus 1 MfdQlaIFTpqGqvLyqyN~~gKKFsE~QiN~FIs~lItsP~~~~e~~~~~k~~~i~s~~~~~~~f~~mfh~sKQPeLy~ 80 (148)
T PF09201_consen 1 MFDQLAIFTPQGQVLYQYNCLGKKFSETQINAFISHLITSPVTKKEDSSKSKFLTISSEKKNSRSFSAMFHISKQPELYY 80 (148)
T ss_dssp ---EEEEE-TT-BEEEEEETTS----HHHHHHHHHHHHHS---GGGTT--EEEEE-----------EEEEEEETTTTEEE
T ss_pred CcceeEEeccCceEEEEecccchHHHHHHHHHHHHHHhcCCCcccCCCcceeeEEecccccCCCChheeeeecCCCcEEE
Confidence 99999999999999986443221 224567889888885421 0 11223333 34444 343 6689999
Q ss_pred EEEEcC
Q psy2523 66 AAVTKQ 71 (691)
Q Consensus 66 v~vt~~ 71 (691)
|+.--.
T Consensus 81 VvTyae 86 (148)
T PF09201_consen 81 VVTYAE 86 (148)
T ss_dssp EEEESS
T ss_pred EEEecc
Confidence 988654
No 31
>KOG3369|consensus
Probab=43.12 E-value=2.3e+02 Score=28.05 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=32.7
Q ss_pred EEEEEEeeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHhhcccc
Q psy2523 53 TSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGK 95 (691)
Q Consensus 53 ~~~v~~~~~~l~lv~vt~~~~n~~~~~e~L~~~~~~l~~y~~~ 95 (691)
+-++|+.+-++-||+++....+.+ =.+|++++++-.+|.=|
T Consensus 132 ~l~~~QTlTG~KFVvis~~~~~~a--D~lLrKiYelYsDyvlK 172 (199)
T KOG3369|consen 132 TLHIFQTLTGTKFVVIAEPGTQGA--DSLLRKIYELYSDYVLK 172 (199)
T ss_pred EEEEEEccCCcEEEEEecCCchhH--HHHHHHHHHHHHHHhhc
Confidence 456889999999999998776432 34799999999999864
No 32
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1
Probab=37.35 E-value=1.1e+02 Score=30.73 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=51.0
Q ss_pred EEEEEEeeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHhhcccccccccccccceeeeecccccCCC-HHHHHhhHHHHHH
Q psy2523 53 TSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKIS-EENIKNNFVLIYE 131 (691)
Q Consensus 53 ~~~v~~~~~~l~lv~vt~~~~n~~~~~e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~i~~n~~~i~~ 131 (691)
...++....++-|++|+....|.++.=.||+.|.+.|.+.+. .++ -..+.-....|..
T Consensus 104 k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~---------------------~l~~~~e~l~k~d~i~a 162 (189)
T PF15001_consen 104 KIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLK---------------------ILSQPSEVLLKSDRILA 162 (189)
T ss_pred cEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHH---------------------HhCcHHHhhhhHHHHHH
Confidence 456778899999999999999999999999999999999986 222 3566667778887
Q ss_pred Hhc
Q psy2523 132 LLD 134 (691)
Q Consensus 132 lld 134 (691)
+|+
T Consensus 163 iL~ 165 (189)
T PF15001_consen 163 ILH 165 (189)
T ss_pred HHH
Confidence 887
No 33
>PF03504 Chlam_OMP6: Chlamydia cysteine-rich outer membrane protein 6; InterPro: IPR003506 Three cysteine-rich proteins (also believed to be lipoproteins) make up the extracellular matrix of the Chlamydial outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. As these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism. The largest of these is the major outer membrane protein (MOMP), and constitutes around 60% of the total protein for the membrane []. OMP6 is the second largest, with a molecular mass of 58kDa, while the OMP3 protein is ~15kDa []. MOMP is believed to elicit the strongest immune response, and has recently been linked to heart disease through its sequence similarity to a murine heart-muscle specific alpha myosin []. The OMP6 family plays a structural role in the outer membrane during the EB stage of the Chlamydial cell, and different biovars show a small, yet highly significant, change at peptide charge level []. Members of this family include Chlamydia trachomatis, Chlamydia pneumoniae and Chlamydia psittaci.; GO: 0005201 extracellular matrix structural constituent
Probab=35.74 E-value=1.7e+02 Score=25.37 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=27.8
Q ss_pred ccceEEEEEcCCCCCcceEEEEeeeeEEEEccCCEEEEEEeEecCCc
Q psy2523 385 LGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMK 431 (691)
Q Consensus 385 ~~~~V~I~iPlP~~~~~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~ 431 (691)
.+-||.|+-.+|-++.-+ .|.-.+.- -.++.|+|+|+++-.|.
T Consensus 43 DcvnVviTqqLPce~eFV---~SdPettp-~~D~kLVW~Ig~l~~G~ 85 (95)
T PF03504_consen 43 DCVNVVITQQLPCEVEFV---RSDPETTP-TPDGKLVWKIGRLGQGE 85 (95)
T ss_pred ceeEEEEeecCCcceEEE---ecCCcccc-CCCCEEEEEeccccCCc
Confidence 367899999999864322 22222121 24567999999997765
No 34
>KOG3343|consensus
Probab=34.80 E-value=23 Score=34.19 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=28.0
Q ss_pred CccCCCcccccCCCcccccChHHHHHhhcccc
Q psy2523 513 PSSFPSPSEILDFGYPQNSDTGVLKTFILQQG 544 (691)
Q Consensus 513 ~~~yelLdE~~D~G~pq~t~~~~Lk~~i~~~~ 544 (691)
.+++-.+|||+|.|..+.||++.+..-+.-.+
T Consensus 116 D~i~L~~DEiiD~GvILEtdp~~ia~rv~~~~ 147 (175)
T KOG3343|consen 116 DLIFLALDEIIDGGVILETDPNQIAQRVALRP 147 (175)
T ss_pred ccceeehhhhccCceEEecCHHHHHHHhccCC
Confidence 37888999999999999999999988876554
No 35
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=20.61 E-value=2.6e+02 Score=21.78 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=25.4
Q ss_pred CeEEEEEEEEeeccCcccccceEEEEEcCCCCCcc
Q psy2523 367 RTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSG 401 (691)
Q Consensus 367 ~~~vei~l~l~~~~~~~~~~~~V~I~iPlP~~~~~ 401 (691)
+..++|++.++..-+. .+.+|.|.=++|.+..-
T Consensus 11 Gd~v~Yti~v~N~g~~--~a~~v~v~D~lP~g~~~ 43 (53)
T TIGR01451 11 GDTITYTITVTNNGNV--PATNVVVTDILPSGTTF 43 (53)
T ss_pred CCEEEEEEEEEECCCC--ceEeEEEEEcCCCCCEE
Confidence 4689999988765443 47899999999987543
Done!