Query psy2523
Match_columns 691
No_of_seqs 327 out of 1636
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 18:24:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 2.3E-91 7.8E-96 777.5 52.1 433 1-504 1-435 (435)
2 1w63_M Adaptor-related protein 100.0 2.3E-90 7.8E-95 766.9 43.6 419 1-504 2-422 (423)
3 1i31_A Clathrin coat assembly 100.0 1.3E-69 4.5E-74 577.3 35.1 312 183-504 1-314 (314)
4 4en2_M AP-1 complex subunit MU 100.0 1.3E-66 4.3E-71 541.3 31.6 264 219-504 1-265 (266)
5 3ml6_A Chimeric complex betwee 100.0 8.4E-66 2.9E-70 560.2 35.6 282 213-504 100-385 (385)
6 3l81_A AP-4 complex subunit MU 100.0 1.4E-63 4.9E-68 526.4 30.4 271 211-504 15-301 (301)
7 2vgl_M AP-2 complex subunit MU 100.0 6.9E-40 2.3E-44 364.0 8.0 178 504-691 97-276 (435)
8 1w63_M Adaptor-related protein 100.0 3.9E-39 1.3E-43 356.7 7.4 167 505-691 100-266 (423)
9 1i31_A Clathrin coat assembly 100.0 4.8E-37 1.6E-41 326.7 11.2 153 529-691 1-155 (314)
10 3ml6_A Chimeric complex betwee 100.0 8.3E-31 2.8E-35 285.1 11.6 126 556-691 97-226 (385)
11 4en2_M AP-1 complex subunit MU 100.0 6.2E-31 2.1E-35 273.1 7.4 109 565-691 1-109 (266)
12 3l81_A AP-4 complex subunit MU 100.0 5.5E-30 1.9E-34 270.1 10.1 113 560-691 18-131 (301)
13 1w63_Q Adapter-related protein 99.9 1.1E-26 3.7E-31 223.2 16.3 136 1-198 1-139 (158)
14 2vgl_S AP-2 complex subunit si 99.9 1.6E-26 5.5E-31 218.3 14.0 135 1-197 1-139 (142)
15 3tjz_C Coatomer subunit zeta-1 99.9 2.2E-23 7.4E-28 198.7 15.8 131 1-196 12-148 (153)
16 3g9h_A Suppressor of yeast pro 98.7 3.1E-06 1E-10 88.7 25.2 207 229-477 67-302 (328)
17 1w63_Q Adapter-related protein 97.6 2.9E-06 9.9E-11 80.9 -3.5 42 505-546 100-141 (158)
18 3tjz_C Coatomer subunit zeta-1 97.2 1.9E-05 6.4E-10 74.9 -2.8 39 505-543 111-149 (153)
19 2vgl_S AP-2 complex subunit si 97.2 1.2E-05 4.1E-10 75.1 -4.1 40 504-543 99-139 (142)
20 3cpt_A Mitogen-activated prote 79.0 12 0.00041 34.4 9.8 90 2-91 38-135 (143)
21 1nrj_A Signal recognition part 75.3 8 0.00027 35.4 7.4 70 1-70 1-92 (158)
22 2j3t_C Trafficking protein par 72.8 14 0.00046 34.0 8.7 92 1-94 2-110 (145)
23 3kyq_A YKT6, synaptobrevin hom 71.2 31 0.0011 33.4 11.3 93 2-94 4-107 (199)
24 2fh5_A Signal recognition part 68.4 31 0.0011 33.1 10.3 93 1-94 10-104 (185)
25 3cue_A Transport protein parti 67.2 72 0.0025 31.3 12.8 24 1-24 2-25 (219)
26 2nut_C Vesicle-trafficking pro 67.2 45 0.0015 31.9 11.5 48 47-94 54-101 (196)
27 4b93_A Vesicle-associated memb 66.7 30 0.001 33.0 10.1 82 10-94 10-92 (189)
28 2vx8_A Nucleoporin-like protei 59.7 39 0.0013 31.8 9.2 48 47-94 87-134 (169)
29 2j3w_A Sedlin, trafficking pro 51.7 77 0.0026 28.7 9.6 89 2-94 6-113 (142)
30 4afi_A AP-3 complex subunit de 51.4 1E+02 0.0034 29.0 10.6 48 47-94 97-144 (173)
31 3cue_C Transport protein parti 50.4 36 0.0012 31.7 7.2 89 1-93 2-115 (159)
32 3bw6_A Synaptobrevin homolog Y 50.2 1.5E+02 0.005 26.8 11.7 93 2-94 7-110 (144)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=2.3e-91 Score=777.50 Aligned_cols=433 Identities=87% Similarity=1.336 Sum_probs=371.1
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCcchhhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHHH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFE 80 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~~~~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~e 80 (691)
||++|||+|++|++|++|+|+++..++.++.|...+...+...++|+++.++++|+|+++++|||+|+++.|.|+++++|
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le 80 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFE 80 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHH
Confidence 99999999999999999999998889999999888875544468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCccccccchhhhHHHhhhcccc
Q psy2523 81 FLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKEN 160 (691)
Q Consensus 81 ~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~~~~~~~~~~~~~~~~~ke~ 160 (691)
|||+|+++|++||| .++|++|++||++||+|||
T Consensus 81 ~L~~~v~vl~~yf~---------------------~v~E~~I~~Nf~~vy~lLD-------------------------- 113 (435)
T 2vgl_M 81 FLYKMCDVMAAYFG---------------------KISEENIKNNFVLIYELLD-------------------------- 113 (435)
T ss_dssp HHHHHHHHHHHHHS---------------------SCCHHHHHHTHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHHHh---------------------ccCHHHHHHhHHHHHHHHH--------------------------
Confidence 99999999999999 8999999999999999999
Q ss_pred cccccCCCCCCCccccccCCccCCCCchhhhhhhcccCccccc--cccccccccccccccccccCCcccccceEEEEEEE
Q psy2523 161 TYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQS--KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 238 (691)
Q Consensus 161 ~~~~~~~~~~~~~~E~~d~G~p~~~~~~~Lk~~i~~~~~~~~~--~~~~~~~~~~~~~~~~WR~~~i~y~kNEI~vDVvE 238 (691)
||+|+|+||+|+.+.|+.++..+++..+. .+....+++++++++|||+.|++|++|||||||+|
T Consensus 114 --------------E~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~wr~~gi~~~~nei~vdV~E 179 (435)
T 2vgl_M 114 --------------EILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 179 (435)
T ss_dssp --------------HHEETTEECCCCHHHHGGGCCCCCCCCC-----------------CCSSCSCCCCSSCEEEEEEEE
T ss_pred --------------HHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccccccccccCCcCcceEEEEEEE
Confidence 99999999999999999999888765421 11122345567788999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhccCCCCCCCCCccccCCCCCCCCCCCeeeecccccc
Q psy2523 239 YVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFH 318 (691)
Q Consensus 239 ~v~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ldd~~FH 318 (691)
+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||+++.+++.+.+. .+..+.....++.|+||+||
T Consensus 180 ~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~----------~~~~~~~~~~~~~l~d~~fH 249 (435)
T 2vgl_M 180 SVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT----------ADETSKSGKQSIAIDDCTFH 249 (435)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC---------------------------CCCCCEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccc----------cccccccccCceEccccccc
Confidence 99999999999999999999999999999999999999987665432100 00000011246789999999
Q ss_pred ccccccCcCccceEEEecCCCceEEEEEEecCCCCCCeEEEEEEEecCCeEEEEEEEEeeccCcccccceEEEEEcCCCC
Q psy2523 319 QCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLN 398 (691)
Q Consensus 319 ~cV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~~lPf~i~p~~~~~~~~~vei~l~l~~~~~~~~~~~~V~I~iPlP~~ 398 (691)
|||++++|+++|+|+|+||||+|+||+||++.+..+||.+.|++++.|++++||+++++++|+++..+++|.|+||+|++
T Consensus 250 ~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~ 329 (435)
T 2vgl_M 250 QCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLN 329 (435)
T ss_dssp TTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSEEEEEEEEEECCSS
T ss_pred eeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCceeeEEEEEEECCCC
Confidence 99999999999999999999999999999998888999999999877778999999999999988889999999999999
Q ss_pred CcceEEEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeecCCCCCCCCCCeEEEEEeeccCCCcEEEEEEeecc
Q psy2523 399 TSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEP 478 (691)
Q Consensus 399 ~~~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~~~~~~~~~~pi~v~F~ip~t~SGl~V~~L~V~e~ 478 (691)
+..++++++.|+++|++++++++|+|++++|+++++++|++++.+....+.+.++||+|+|++|+++|||+|++|+|.++
T Consensus 330 ~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~t~Sgl~V~~l~v~~~ 409 (435)
T 2vgl_M 330 TSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEP 409 (435)
T ss_dssp CCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCCCCCCCEEEEEEESSCTTCCCEEEEEEECS
T ss_pred CCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCcccCCCcEEEEEEEEecccccEEEEEEEecc
Confidence 99999999999999999999999999999999999999999997643345577999999999999999999999999875
Q ss_pred CCCCCCCceeEEEEEEecCCceeEEe
Q psy2523 479 KLNYSDHDVIKWVRYIGRSGLYETRK 504 (691)
Q Consensus 479 ~~~~~~~~~~KwVRYiT~Sg~Y~~r~ 504 (691)
+...++|+|+|||||+|+||+|++|+
T Consensus 410 ~~~~~~y~~~kwVrY~t~sg~y~~R~ 435 (435)
T 2vgl_M 410 KLNYSDHDVIKWVRYIGRSGIYETRC 435 (435)
T ss_dssp SSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred ccccCCCCCcCceEEEEeCCeEEEcC
Confidence 33234799999999999999999995
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.3e-90 Score=766.86 Aligned_cols=419 Identities=40% Similarity=0.755 Sum_probs=364.9
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCcchhhHHHHHHhhccccC-CCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQ-QVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVF 79 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~~~~~~~~f~~~~~~~~~-~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~ 79 (691)
||+|+||+|++|++|++|+|+++..+++++.|...+....+ ..++|+++.++++|+|+++++|||+|+++.|.|+++++
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~l 81 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVF 81 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHHH
T ss_pred ceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHH
Confidence 99999999999999999999998888999999888775433 46899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCccccccchhhhHHHhhhccc
Q psy2523 80 EFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKE 159 (691)
Q Consensus 80 e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~~~~~~~~~~~~~~~~~ke 159 (691)
||||+|+++|++||| .++|++|++||++||+|||
T Consensus 82 e~L~~~v~~l~~yf~---------------------~v~E~~I~~Nf~~vy~lLD------------------------- 115 (423)
T 1w63_M 82 SFLYKVVQVFSEYFK---------------------ELEEESIRDNFVIIYELLD------------------------- 115 (423)
T ss_dssp HHHHHHHHHHHHHSS---------------------CCSHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHh---------------------hcCHHHHHHhHHHHHHHHH-------------------------
Confidence 999999999999999 8999999999999999999
Q ss_pred ccccccCCCCCCCccccccCCccCCCCchhhhhhhcccCccccccccccccccccccccccccCCcccccceEEEEEEEE
Q psy2523 160 NTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEY 239 (691)
Q Consensus 160 ~~~~~~~~~~~~~~~E~~d~G~p~~~~~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~i~y~kNEI~vDVvE~ 239 (691)
||+|+|+||+|+.+.|++++..++..... ....++++.++++|||+.|++|++|||||||+|+
T Consensus 116 ---------------E~id~G~~~~t~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~i~wr~~g~~~~~nei~vdV~E~ 178 (423)
T 1w63_M 116 ---------------ELMDFGYPQTTDSKILQEFITQEGHKLET--GAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEA 178 (423)
T ss_dssp ---------------HHCSSSSCCCCCSTTTTTTCCSCCCCCCC--C-----------CCSSCSSCCCSSCEEEEEEEEE
T ss_pred ---------------HHhcCCEEeecCHHHHHHhhcCCCccccc--cccCCcccccCCCCccccCCccccceEEEEEEEE
Confidence 99999999999999999999887654211 0012344567789999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhccCCCCCCCCCccccCCCCCCCCCCCeeeeccccccc
Q psy2523 240 VNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQ 319 (691)
Q Consensus 240 v~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ldd~~FH~ 319 (691)
|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..++..+. ....++.|+||+|||
T Consensus 179 v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~------------------~~~~~v~l~d~~fHp 240 (423)
T 1w63_M 179 VNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR------------------GKSKSVELEDVKFHQ 240 (423)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC-------------------------------CEEEEEECT
T ss_pred EEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccc------------------cccCceEcccccccc
Confidence 99999999999999999999999999999999999999865543211 123467899999999
Q ss_pred cccccCcCccceEEEecCCCceEEEEEEecCCCCCCeEEEEEEEecCCeEEEEEEEEeeccCcccccceEEEEEcCCCCC
Q psy2523 320 CVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNT 399 (691)
Q Consensus 320 cV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~~lPf~i~p~~~~~~~~~vei~l~l~~~~~~~~~~~~V~I~iPlP~~~ 399 (691)
||++++|+++|+|+|+||||+|+||+||++.+..+||.+.|+++..+++++||+++++++|+++..+++|.|+||+|+++
T Consensus 241 cV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~ 320 (423)
T 1w63_M 241 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDA 320 (423)
T ss_dssp TEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSEEESCEEEEECCTTC
T ss_pred cccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCcceeeEEEEEEeCCCCc
Confidence 99999999999999999999999999999988889999999998777789999999999999888899999999999999
Q ss_pred cceEEEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeecCCCCCCCCCCeEEEEEee-ccCCCcEEEEEEeecc
Q psy2523 400 SGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVRYLKVFEP 478 (691)
Q Consensus 400 ~~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~~~~~~~~~~pi~v~F~ip-~t~SGl~V~~L~V~e~ 478 (691)
..++++++.|+++|++++++++|+|++++|+++++++|++++.+......+.++||+|+|++| +++||++|++|+|.++
T Consensus 321 ~~~~~~~~~G~~~y~~~~~~l~W~I~~i~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~~t~Sgl~V~~l~v~~~ 400 (423)
T 1w63_M 321 DSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK 400 (423)
T ss_dssp CCCEEEESSSEEEEETGGGEEEEECSEEETTCEEEEEEEEEC----------CCCEEEEBCCSSCCTTCCCEEEEEEECS
T ss_pred ccceEEecCccEEEecCCCEEEEEeCcCCCCCcEEEEEEEEccCCCcccccCCCcEEEEEEECCEeCCCCEEEEEEeEcc
Confidence 999999999999999999999999999999999999999998754322456799999999999 9999999999999874
Q ss_pred CCCCCCCceeEEEEEEecCCceeEEe
Q psy2523 479 KLNYSDHDVIKWVRYIGRSGLYETRK 504 (691)
Q Consensus 479 ~~~~~~~~~~KwVRYiT~Sg~Y~~r~ 504 (691)
.+|+|+|||||+|+||+|++|+
T Consensus 401 ----~~y~~~kwVrY~t~sg~y~~R~ 422 (423)
T 1w63_M 401 ----SGYQAIPWVRYITQNGDYQLRT 422 (423)
T ss_dssp ----SCCCCEEEEEEEEEBSCEEECC
T ss_pred ----CCCCCcCceEEEEeCCcEEEec
Confidence 4799999999999999999996
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=1.3e-69 Score=577.33 Aligned_cols=312 Identities=84% Similarity=1.311 Sum_probs=239.6
Q ss_pred CCCCchhhhhhhcccCcccc--ccccccccccccccccccccCCcccccceEEEEEEEEEEEEEcCCCCEEEEEEEEEEE
Q psy2523 183 QNSDTGVLKTFILQQGVKSQ--SKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVV 260 (691)
Q Consensus 183 ~~~~~~~Lk~~i~~~~~~~~--~~~~~~~~~~~~~~~~~WR~~~i~y~kNEI~vDVvE~v~~i~~~~G~i~~~~V~G~I~ 260 (691)
|+|+++.||++|+++++... +.+....++.+++++++||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~ 80 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV 80 (314)
T ss_dssp -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 67899999999999886543 1122345667788999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEecccchhhccCCCCCCCCCccccCCCCCCCCCCCeeeeccccccccccccCcCccceEEEecCCCc
Q psy2523 261 MKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGE 340 (691)
Q Consensus 261 ~ks~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ldd~~FH~cV~l~~f~~~r~IsFiPPDG~ 340 (691)
|+|+|+|||+|+|+||+++.+++.+.+. .+..+.....++.|+||+|||||++++|+++|+|+|+||||+
T Consensus 81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~----------~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~ 150 (314)
T 1i31_A 81 MKSYLSGMPECKFGMNDKIVIEKQGKGT----------ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGE 150 (314)
T ss_dssp EEEECSSSCEEEEEESCCC---------------------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEE
T ss_pred EEEEcCCCCeEEEEECCchhcccccccc----------ccccccccCCceEcccccccccccHHHcCCcceEEEECCCCC
Confidence 9999999999999999987665432100 000001113467899999999999999999999999999999
Q ss_pred eEEEEEEecCCCCCCeEEEEEEEecCCeEEEEEEEEeeccCcccccceEEEEEcCCCCCcceEEEEeeeeEEEEccCCEE
Q psy2523 341 FELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAI 420 (691)
Q Consensus 341 F~Lm~Yr~~~~~~lPf~i~p~~~~~~~~~vei~l~l~~~~~~~~~~~~V~I~iPlP~~~~~~~~~~s~G~~~y~~~~~~l 420 (691)
|+||+||++.+..+||.+.|++.+.+++++||+++++++|+.+..++||.|+||+|+++..++++++.|+++|+++++++
T Consensus 151 F~Lm~Yr~~~~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l 230 (314)
T 1i31_A 151 FELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAI 230 (314)
T ss_dssp EEEEEEEECSSCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEEEEEGGGTEE
T ss_pred eEEEEEEecCCcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCceEEEecCCCEE
Confidence 99999999988889999999998777789999999999999888899999999999999999999999999999999999
Q ss_pred EEEEeEecCCceeEEEEEEEEeecCCCCCCCCCCeEEEEEeeccCCCcEEEEEEeeccCCCCCCCceeEEEEEEecCCce
Q psy2523 421 VWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLY 500 (691)
Q Consensus 421 ~W~I~kl~g~~e~~l~~~~~l~~~~~~~~~~~~pi~v~F~ip~t~SGl~V~~L~V~e~~~~~~~~~~~KwVRYiT~Sg~Y 500 (691)
+|+|++++|+++++++|+++|.+......+.++||+|+|++|+++|||+|++|+|.+++.+.++|+|+|||||+|+||+|
T Consensus 231 ~W~I~~i~g~~e~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y 310 (314)
T 1i31_A 231 VWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIY 310 (314)
T ss_dssp EEEEEEEESSEEEEEEEEEEECCCCSSSCCCCCCEEEEEEESSCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEE
T ss_pred EEEeCcCCCCCcEEEEEEEEecCCCcCCccCCCcEEEEEEEeecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeE
Confidence 99999999999999999999976433456779999999999999999999999998753323579999999999999999
Q ss_pred eEEe
Q psy2523 501 ETRK 504 (691)
Q Consensus 501 ~~r~ 504 (691)
++|+
T Consensus 311 ~~R~ 314 (314)
T 1i31_A 311 ETRC 314 (314)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9995
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=1.3e-66 Score=541.33 Aligned_cols=264 Identities=41% Similarity=0.786 Sum_probs=239.3
Q ss_pred ccccCCcccccceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhccCCCCCCCCCccccC
Q psy2523 219 GWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAG 298 (691)
Q Consensus 219 ~WR~~~i~y~kNEI~vDVvE~v~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~~ 298 (691)
+||++|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..+++.+.
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~------------ 68 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR------------ 68 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTC------------
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccc------------
Confidence 69999999999999999999999999999999999999999999999999999999999877665421
Q ss_pred CCCCCCCCCCeeeeccccccccccccCcCccceEEEecCCCceEEEEEEecCCCCCCeEEEEEEEecCCeEEEEEEEEee
Q psy2523 299 GDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKS 378 (691)
Q Consensus 299 ~~~~~~~~~~~i~ldd~~FH~cV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~~lPf~i~p~~~~~~~~~vei~l~l~~ 378 (691)
....++.++||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||.+.|++++.+.+++++++++++
T Consensus 69 ------~~~~~~~l~d~~fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~~~vei~v~~k~ 142 (266)
T 4en2_M 69 ------GKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKS 142 (266)
T ss_dssp ------TTSCCBCCEEEEECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ------cccCccCccccccccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCCEEEEEEEEEec
Confidence 11346789999999999999999999999999999999999999988889999999998777789999999999
Q ss_pred ccCcccccceEEEEEcCCCCCcceEEEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeecCCCCCCCCCCeEEE
Q psy2523 379 QFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMN 458 (691)
Q Consensus 379 ~~~~~~~~~~V~I~iPlP~~~~~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~~~~~~~~~~pi~v~ 458 (691)
+|+.+..++||.|+||+|.++..++++++.|+++|++++++|+|+|++++|+++++++|+|+|.+......+.++||+|+
T Consensus 143 ~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~~~~g~~e~~l~~~~~l~s~~~~~~~~~~pI~v~ 222 (266)
T 4en2_M 143 QFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVK 222 (266)
T ss_dssp CBCTTCEEEEEEEEEECCTTCEEEEEEESSSEEEEETTTTEEEEEEEEEESSCEEEEEEEEEC----------CCCEEEE
T ss_pred CCCCCcEEEEEEEEECCCCCcCcceEEecCceEEEeccCCEEEEEEeeECCCcceEEEEEEEeCCCCCCCcccCCcEEEE
Confidence 99988899999999999999999999999999999999999999999999999999999999976433445789999999
Q ss_pred EEee-ccCCCcEEEEEEeeccCCCCCCCceeEEEEEEecCCceeEEe
Q psy2523 459 FEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRK 504 (691)
Q Consensus 459 F~ip-~t~SGl~V~~L~V~e~~~~~~~~~~~KwVRYiT~Sg~Y~~r~ 504 (691)
|+|| +|+|||+|++|+|.|+ .+|+++|||||+|+||+|++|+
T Consensus 223 F~ip~~t~SGl~V~~L~v~e~----~~y~~~kwVrY~T~sg~y~~R~ 265 (266)
T 4en2_M 223 FEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGDYQLRT 265 (266)
T ss_dssp EEEESEESSCCCEEEEEEECS----SCCCEEEEEEEEEECSSEEECC
T ss_pred EEeCCceeCCcEEEEEEeecc----CCCCCCCCEEEEEeCCCEEEec
Confidence 9999 9999999999999875 5799999999999999999996
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=8.4e-66 Score=560.15 Aligned_cols=282 Identities=79% Similarity=1.242 Sum_probs=243.2
Q ss_pred cccccc-cc---ccCCcccccceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhccCCCC
Q psy2523 213 QVTGQI-GW---RREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSS 288 (691)
Q Consensus 213 ~~~~~~-~W---R~~~i~y~kNEI~vDVvE~v~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~~~~~ 288 (691)
..++++ || |+.|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||+++.+++.+...
T Consensus 100 ~~s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~ 179 (385)
T 3ml6_A 100 PYSPQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT 179 (385)
T ss_dssp ---CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC-----------
T ss_pred ccCCCCCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccc
Confidence 344555 99 78899999999999999999999999999999999999999999999999999999987766543210
Q ss_pred CCCCCccccCCCCCCCCCCCeeeeccccccccccccCcCccceEEEecCCCceEEEEEEecCCCCCCeEEEEEEEecCCe
Q psy2523 289 AKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRT 368 (691)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~i~ldd~~FH~cV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~~lPf~i~p~~~~~~~~ 368 (691)
.+..+.....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||++.|++++.+++
T Consensus 180 ----------~~~~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~~ 249 (385)
T 3ml6_A 180 ----------ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRT 249 (385)
T ss_dssp ---------------------CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSSCCCSEEEEEEEEEETTT
T ss_pred ----------cccccccccCceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCCCCCCEEEEEEEEeCCCe
Confidence 0111122345688999999999999999999999999999999999999998888999999999988888
Q ss_pred EEEEEEEEeeccCcccccceEEEEEcCCCCCcceEEEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeecCCCC
Q psy2523 369 KMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKK 448 (691)
Q Consensus 369 ~vei~l~l~~~~~~~~~~~~V~I~iPlP~~~~~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~~~~~ 448 (691)
+++|+++++++|++++.+++|+|+||+|+++.++++.++.|+++|++++++++|+|++++|+++++|+|+|++.+....+
T Consensus 250 ~vei~v~lk~~f~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~k~~g~~e~~l~~~~~l~~~~~~~ 329 (385)
T 3ml6_A 250 KLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKK 329 (385)
T ss_dssp EEEEEEEEEECSCTTCCEEEEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEECSSEEEEEEEEEEECCCSSCC
T ss_pred EEEEEEEEeecCCCcceEEEEEEEecCCCCcccceEEecCceEEEeccCcEEEEEeeeECCCcceEEEEEEEECCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997654445
Q ss_pred CCCCCCeEEEEEeeccCCCcEEEEEEeeccCCCCCCCceeEEEEEEecCCceeEEe
Q psy2523 449 KWTRPPISMNFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRK 504 (691)
Q Consensus 449 ~~~~~pi~v~F~ip~t~SGl~V~~L~V~e~~~~~~~~~~~KwVRYiT~Sg~Y~~r~ 504 (691)
.|.++||+|+|+||+|+|||+|++|+|.|+..++++|+++|||||+|+||+|++|+
T Consensus 330 ~~~~~PI~v~F~Ip~t~SGl~Vr~L~v~e~~~~~~~y~~~kwVRYiT~sg~Y~~R~ 385 (385)
T 3ml6_A 330 KWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 385 (385)
T ss_dssp SCCCCCEEEEEEESSCTTCCCEEEEEEECSSSCCCGGGCEEEEEECEEEEEEEECC
T ss_pred cccCCCEEEEEEEeccccCCEEEEEEEecccCcccCCCccccEEEEEECCCEEecC
Confidence 67899999999999999999999999988655556799999999999999999995
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=1.4e-63 Score=526.39 Aligned_cols=271 Identities=26% Similarity=0.498 Sum_probs=221.7
Q ss_pred cccccccc-ccccCCcccccceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhccCCCCC
Q psy2523 211 TSQVTGQI-GWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSA 289 (691)
Q Consensus 211 ~~~~~~~~-~WR~~~i~y~kNEI~vDVvE~v~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~~~~~~ 289 (691)
++++++++ +||+. +|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..+++.+..
T Consensus 15 ~~a~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~-- 90 (301)
T 3l81_A 15 SSAASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELR-- 90 (301)
T ss_dssp --------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTT--
T ss_pred chhhcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcccccccccccc--
Confidence 34455555 99986 89999999999999999999999999999999999999999999999999998766544210
Q ss_pred CCCCccccCCCCCCCCCCCeeeeccccccccccccCcCccceEEEecCCCceEEEEEEecCCC--CCCeEEEEEEEecCC
Q psy2523 290 KSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDI--ALPFRVIPLVREATR 367 (691)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~i~ldd~~FH~cV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~--~lPf~i~p~~~~~~~ 367 (691)
....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+. .+||.+.|+++..++
T Consensus 91 ---------------~~~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~ 155 (301)
T 3l81_A 91 ---------------GYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRG 155 (301)
T ss_dssp ---------------CCCSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTT
T ss_pred ---------------cccCceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCC
Confidence 113468899999999999999999999999999999999999998764 699999999987654
Q ss_pred -eEEEEEEEEeeccCcccccceEEEEEcCCCCCcceE--EEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeec
Q psy2523 368 -TKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQ--LICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLET 444 (691)
Q Consensus 368 -~~vei~l~l~~~~~~~~~~~~V~I~iPlP~~~~~~~--~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~ 444 (691)
+++||+++++++|+.+..++||.|+||+|+++..++ +.++.|+++| ++++|+|+|++++|+++.+++++|++.+.
T Consensus 156 ~~~ie~~l~l~~~f~~~~~~~nV~I~IPvP~~~~~~~~~~~~~~G~~~y--~~~~lvW~I~~~~g~~~~s~~~~~~l~~~ 233 (301)
T 3l81_A 156 SGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAEL--AEGALRWDLPRVQGGSQLSGLFQMDVPGP 233 (301)
T ss_dssp TSEEEEEEEEEECSCTTCEEEEEEEEEECCTTCEEEEEEESSTTCEEEE--ETTEEEEEECCEETTCEEEEEEEEECCCC
T ss_pred cEEEEEEEEEecCCCCCcEEEEEEEEEcCCCCcccceEEEeecCceEEE--eCcEEEEEEeeECCCcEEeEEEEEEecCC
Confidence 799999999999999999999999999999998888 5567899999 88999999999999999999999888643
Q ss_pred CCC---------CCCCCCCeEEEEEee-ccCCCcEEEEEEeeccCCCCCCCceeEEEEEEecCCceeEEe
Q psy2523 445 DTK---------KKWTRPPISMNFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRK 504 (691)
Q Consensus 445 ~~~---------~~~~~~pi~v~F~ip-~t~SGl~V~~L~V~e~~~~~~~~~~~KwVRYiT~Sg~Y~~r~ 504 (691)
... ..|.++||+|+|+|| +|+|||+|++|+|.|+. +.+|+++|||||+|+||+|++|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~PI~v~F~ip~~t~SGl~Vr~L~v~e~~--~~~y~~~kwVRYiT~sg~Y~~R~ 301 (301)
T 3l81_A 234 PGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLRLAFRP--SGNANPHKWVRHLSHSDAYVIRI 301 (301)
T ss_dssp CC------------CCCCCEEEEEEEETCCSSCCCEEEEEEEC---------CEEEEEEEEEEEEEEECC
T ss_pred ccccccccccccccccCCCEEEEEEeCCccccCcEEEEEEEeccc--ccCCCCccceEEEEeCCcEEEcC
Confidence 221 257899999999999 99999999999998762 13689999999999999999995
No 7
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=6.9e-40 Score=363.96 Aligned_cols=178 Identities=75% Similarity=1.165 Sum_probs=130.8
Q ss_pred eeccccccCCccCCCcccccCCCcccccChHHHHHhhccccccccc--cccccccccccccccccccCCcccccceEEEE
Q psy2523 504 KENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQS--KEEQSQITSQVTGQIGWRREGIKYRRNELFLD 581 (691)
Q Consensus 504 ~e~~~k~~~~~~yelLdE~~D~G~pq~t~~~~Lk~~i~~~~~~~~~--~~~~~~~~~~~~~~~~WR~~~i~y~kNEi~vD 581 (691)
.|..++.++..+|+|||||+|+||||.|+++.|++++..+++..+. .+....++.++++++|||+.|++|++||||+|
T Consensus 97 ~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~wr~~gi~~~~nei~vd 176 (435)
T 2vgl_M 97 SEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLD 176 (435)
T ss_dssp CHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------CCSSCSCCCCSSCEEEEE
T ss_pred CHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccccccccccCCcCcceEEEE
Confidence 3445544555899999999999999999999999999998865431 11123445567789999999999999999999
Q ss_pred EEEEEEEEEcCCCcEEEEEEeEEEEEEEeecCCCeeEEeeccceeeeccCCCCCcCCCccccCCCCCCCCCCCeEEeccc
Q psy2523 582 VLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDC 661 (691)
Q Consensus 582 v~E~i~~~~~~~G~vl~~~i~G~I~~~s~LsG~P~~~l~lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 661 (691)
|+|+++++++++|.+++++|.|+|+|+|||||||+|+|+|||++.++..+... .++....+.+++.||||
T Consensus 177 V~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~----------~~~~~~~~~~~~~l~d~ 246 (435)
T 2vgl_M 177 VLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT----------ADETSKSGKQSIAIDDC 246 (435)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC---------------------------CCCCCEE
T ss_pred EEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccc----------cccccccccCceEcccc
Confidence 99999999999999999999999999999999999999999987765322100 00000011235789999
Q ss_pred cCcccccCCCccccCcEEEeCCCCceEecC
Q psy2523 662 QFHQCVKLSKFETEHSISFIPPDGEFELMR 691 (691)
Q Consensus 662 ~FH~cV~l~~f~~~r~i~FiPPDG~F~Lm~ 691 (691)
+|||||++++|+++|+|+|+||||+|+||+
T Consensus 247 ~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~ 276 (435)
T 2vgl_M 247 TFHQCVRLSKFDSERSISFIPPDGEFELMR 276 (435)
T ss_dssp EECTTEEEC-----CCEEECCCSEEEEEEE
T ss_pred ccceeecHhHhccCceEEEECCCCcEEEEE
Confidence 999999999999999999999999999995
No 8
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=3.9e-39 Score=356.72 Aligned_cols=167 Identities=46% Similarity=0.862 Sum_probs=132.1
Q ss_pred eccccccCCccCCCcccccCCCcccccChHHHHHhhccccccccccccccccccccccccccccCCcccccceEEEEEEE
Q psy2523 505 ENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 584 (691)
Q Consensus 505 e~~~k~~~~~~yelLdE~~D~G~pq~t~~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~i~y~kNEi~vDv~E 584 (691)
|..++.++..+|+|||||+|+||||.|+++.|+++|..++..... .....+.+.++++|||+.|++|++||||+||+|
T Consensus 100 E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~i~wr~~g~~~~~nei~vdV~E 177 (423)
T 1w63_M 100 EESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLET--GAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIE 177 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCC--C-----------CCSSCSSCCCSSCEEEEEEEE
T ss_pred HHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccccc--cccCCcccccCCCCccccCCccccceEEEEEEE
Confidence 444544555899999999999999999999999999998765211 111334456788999999999999999999999
Q ss_pred EEEEEEcCCCcEEEEEEeEEEEEEEeecCCCeeEEeeccceeeeccCCCCCcCCCccccCCCCCCCCCCCeEEeccccCc
Q psy2523 585 YVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFH 664 (691)
Q Consensus 585 ~i~~~~~~~G~vl~~~i~G~I~~~s~LsG~P~~~l~lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FH 664 (691)
+++++++++|.+++++|.|+|+|+|+|||||+|+|+|||+..++..|+ ....++.||||+||
T Consensus 178 ~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~------------------~~~~~v~l~d~~fH 239 (423)
T 1w63_M 178 AVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR------------------GKSKSVELEDVKFH 239 (423)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC-------------------------------CEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccc------------------cccCceEccccccc
Confidence 999999999999999999999999999999999999999876543211 11235789999999
Q ss_pred ccccCCCccccCcEEEeCCCCceEecC
Q psy2523 665 QCVKLSKFETEHSISFIPPDGEFELMR 691 (691)
Q Consensus 665 ~cV~l~~f~~~r~i~FiPPDG~F~Lm~ 691 (691)
|||++++|+++|+|+|+||||+|+||+
T Consensus 240 pcV~~~~f~~~r~isf~PPdg~F~Lm~ 266 (423)
T 1w63_M 240 QCVRLSRFENDRTISFIPPDGEFELMS 266 (423)
T ss_dssp TTEEESSSSSCCEEEECCCSEEEEEEE
T ss_pred ccccHHHhCCCCeEEEECCCCcEEEEE
Confidence 999999999999999999999999995
No 9
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=4.8e-37 Score=326.73 Aligned_cols=153 Identities=80% Similarity=1.263 Sum_probs=93.7
Q ss_pred cccChHHHHHhhccccccccc--cccccccccccccccccccCCcccccceEEEEEEEEEEEEEcCCCcEEEEEEeEEEE
Q psy2523 529 QNSDTGVLKTFILQQGVKSQS--KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVV 606 (691)
Q Consensus 529 q~t~~~~Lk~~i~~~~~~~~~--~~~~~~~~~~~~~~~~WR~~~i~y~kNEi~vDv~E~i~~~~~~~G~vl~~~i~G~I~ 606 (691)
|+||+++||+||.++++..+. ......++.++++++|||+.|++|++|||||||+|+|+++++++|.+++++|.|.|+
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~ 80 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV 80 (314)
T ss_dssp -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 799999999999999876532 122345667788999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCeeEEeeccceeeeccCCCCCcCCCccccCCCCCCCCCCCeEEeccccCcccccCCCccccCcEEEeCCCCc
Q psy2523 607 MKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGE 686 (691)
Q Consensus 607 ~~s~LsG~P~~~l~lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FH~cV~l~~f~~~r~i~FiPPDG~ 686 (691)
|+|||||||+|+|+|||+++++..+... .++.......++.||||+|||||++++|+++|+|+|+||||+
T Consensus 81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~----------~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~ 150 (314)
T 1i31_A 81 MKSYLSGMPECKFGMNDKIVIEKQGKGT----------ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGE 150 (314)
T ss_dssp EEEECSSSCEEEEEESCCC---------------------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEE
T ss_pred EEEEcCCCCeEEEEECCchhcccccccc----------ccccccccCCceEcccccccccccHHHcCCcceEEEECCCCC
Confidence 9999999999999999987765332110 000011112357899999999999999999999999999999
Q ss_pred eEecC
Q psy2523 687 FELMR 691 (691)
Q Consensus 687 F~Lm~ 691 (691)
|+||+
T Consensus 151 F~Lm~ 155 (314)
T 1i31_A 151 FELMR 155 (314)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99995
No 10
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=99.97 E-value=8.3e-31 Score=285.09 Aligned_cols=126 Identities=67% Similarity=1.061 Sum_probs=95.4
Q ss_pred ccccccccc-cc---ccCCcccccceEEEEEEEEEEEEEcCCCcEEEEEEeEEEEEEEeecCCCeeEEeeccceeeeccC
Q psy2523 556 ITSQVTGQI-GW---RREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKG 631 (691)
Q Consensus 556 ~~~~~~~~~-~W---R~~~i~y~kNEi~vDv~E~i~~~~~~~G~vl~~~i~G~I~~~s~LsG~P~~~l~lnd~~~~~~~~ 631 (691)
.+.+...++ || |..|++|+||||||||+|+|+++++++|.+++++|.|+|.|+|||||||+|+|+|||++.++..+
T Consensus 97 ~~~~~s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~ 176 (385)
T 3ml6_A 97 GPRPYSPQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG 176 (385)
T ss_dssp ------CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC--------
T ss_pred ccCccCCCCCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCcccccccc
Confidence 444445566 99 89999999999999999999999999999999999999999999999999999999998776433
Q ss_pred CCCCcCCCccccCCCCCCCCCCCeEEeccccCcccccCCCccccCcEEEeCCCCceEecC
Q psy2523 632 GSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691 (691)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FH~cV~l~~f~~~r~i~FiPPDG~F~Lm~ 691 (691)
+.. .+..++....++.|+||+|||||++++|+++|+|+|+||||+|+||+
T Consensus 177 ~~~----------~~~~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~ 226 (385)
T 3ml6_A 177 KGT----------ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMR 226 (385)
T ss_dssp ------------------------CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEE
T ss_pred ccc----------cccccccccCceEccccccccccChhHccccceEEEeCCCCceEEEE
Confidence 210 00111222346789999999999999999999999999999999995
No 11
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=99.96 E-value=6.2e-31 Score=273.11 Aligned_cols=109 Identities=54% Similarity=1.043 Sum_probs=99.7
Q ss_pred ccccCCcccccceEEEEEEEEEEEEEcCCCcEEEEEEeEEEEEEEeecCCCeeEEeeccceeeeccCCCCCcCCCccccC
Q psy2523 565 GWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAG 644 (691)
Q Consensus 565 ~WR~~~i~y~kNEi~vDv~E~i~~~~~~~G~vl~~~i~G~I~~~s~LsG~P~~~l~lnd~~~~~~~~~~~~~~~~~~~~~ 644 (691)
+||+.|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|||+|||+|+|+|||+..++..++.
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~----------- 69 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG----------- 69 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCT-----------
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCcccccccccc-----------
Confidence 699999999999999999999999999999999999999999999999999999999998776543311
Q ss_pred CCCCCCCCCCeEEeccccCcccccCCCccccCcEEEeCCCCceEecC
Q psy2523 645 GDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691 (691)
Q Consensus 645 ~~~~~~~~~~~~~l~d~~FH~cV~l~~f~~~r~i~FiPPDG~F~Lm~ 691 (691)
...++.++||+|||||++++|+++|+|+|+||||+|+||+
T Consensus 70 -------~~~~~~l~d~~fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~ 109 (266)
T 4en2_M 70 -------KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMS 109 (266)
T ss_dssp -------TSCCBCCEEEEECTTBCHHHHHHHCCCEECCCSEEEEEEE
T ss_pred -------ccCccCccccccccccCHhHccccceEEEeCCCCceEEEE
Confidence 1235789999999999999999999999999999999995
No 12
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=99.96 E-value=5.5e-30 Score=270.15 Aligned_cols=113 Identities=28% Similarity=0.580 Sum_probs=89.4
Q ss_pred cccc-cccccCCcccccceEEEEEEEEEEEEEcCCCcEEEEEEeEEEEEEEeecCCCeeEEeeccceeeeccCCCCCcCC
Q psy2523 560 VTGQ-IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSS 638 (691)
Q Consensus 560 ~~~~-~~WR~~~i~y~kNEi~vDv~E~i~~~~~~~G~vl~~~i~G~I~~~s~LsG~P~~~l~lnd~~~~~~~~~~~~~~~ 638 (691)
++.+ ++||+. +|++|||||||+|+|+++++++|.+++++|.|+|.|+|||||||+|+|+|||+..++..+..
T Consensus 18 ~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~----- 90 (301)
T 3l81_A 18 ASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELR----- 90 (301)
T ss_dssp -----------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTT-----
T ss_pred hcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcccccccccccc-----
Confidence 3444 499986 79999999999999999999999999999999999999999999999999999877532210
Q ss_pred CccccCCCCCCCCCCCeEEeccccCcccccCCCccccCcEEEeCCCCceEecC
Q psy2523 639 GLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691 (691)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~l~d~~FH~cV~l~~f~~~r~i~FiPPDG~F~Lm~ 691 (691)
...+++.||||+|||||++++|+++|+|+|+||||+|+||+
T Consensus 91 ------------~~~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~ 131 (301)
T 3l81_A 91 ------------GYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMR 131 (301)
T ss_dssp ------------CCCSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEE
T ss_pred ------------cccCceEccccccccccChhHccccceEEecCCCCeeEEEE
Confidence 11235789999999999999999999999999999999995
No 13
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.94 E-value=1.1e-26 Score=223.18 Aligned_cols=136 Identities=19% Similarity=0.324 Sum_probs=125.5
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCcch---hhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDIGR---NAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAM 77 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~~~---~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~ 77 (691)
||+++||+|++|+++++|+|+++..+ ...+.|...+ .++++.++|+++.++++|+|+++++|||+++++++.|+++
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~ 79 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVV-LARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELI 79 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHH-HTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH-hccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 99999999999999999999998765 5677786544 4555568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCccccccchhhhHHHhhhc
Q psy2523 78 VFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDR 157 (691)
Q Consensus 78 ~~e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~~~~~~~~~~~~~~~~~ 157 (691)
++|+||+|++++++||| .++|++|++||.+||++||
T Consensus 80 ~le~L~~~vevl~~yf~---------------------~v~E~~I~~Nf~~vy~lLD----------------------- 115 (158)
T 1w63_Q 80 TLELIHRYVELLDKYFG---------------------SVCELDIIFNFEKAYFILD----------------------- 115 (158)
T ss_dssp HHHHHHHHHHHHHHHHS---------------------SCCHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHc---------------------cCCHHHHHHhHHHHHHHHH-----------------------
Confidence 99999999999999999 8999999999999999999
Q ss_pred ccccccccCCCCCCCccccccCCccCCCCchhhhhhhcccC
Q psy2523 158 KENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQG 198 (691)
Q Consensus 158 ke~~~~~~~~~~~~~~~E~~d~G~p~~~~~~~Lk~~i~~~~ 198 (691)
||+|+|+||+|+++.++++|+.++
T Consensus 116 -----------------E~id~G~~~eT~~~~l~~~I~~~~ 139 (158)
T 1w63_Q 116 -----------------EFLMGGDVQDTSKKSVLKAIEQAD 139 (158)
T ss_dssp -----------------TTEETTEESCCCHHHHHHHHHHHH
T ss_pred -----------------HHHhCCEEEecCHHHHHHHHhcch
Confidence 999999999999999999987654
No 14
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.94 E-value=1.6e-26 Score=218.27 Aligned_cols=135 Identities=21% Similarity=0.383 Sum_probs=123.7
Q ss_pred CeEEEEEEeCCCCEEEEEccc---CCcchhhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYR---DDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAM 77 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~---~~~~~~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~ 77 (691)
||+++||+|++|+++++|+|+ ++.+++..+.|..++. .+++.++|+++.++++|+|+++++|||+++++++.|+++
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~-~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~ 79 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVT-VRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLA 79 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHH-TCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHh-cCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHH
Confidence 999999999999999999999 4455778899988777 454568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCccccccchhhhHHHhhhc
Q psy2523 78 VFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDR 157 (691)
Q Consensus 78 ~~e~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~~~~~~~~~~~~~~~~~ 157 (691)
++|+||+|++++++||| .++|++|++||.+||++||
T Consensus 80 ~le~L~~~ve~l~~yf~---------------------~v~E~~I~~Nf~~vy~lLD----------------------- 115 (142)
T 2vgl_S 80 YLEAIHNFVEVLNEYFH---------------------NVCELDLVFNFYKVYTVVD----------------------- 115 (142)
T ss_dssp HHHHHHHHHHHHHHHTT---------------------SCCHHHHHHTHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHc---------------------cCCHHHHHHHHHHHHHHHH-----------------------
Confidence 99999999999999999 8999999999999999999
Q ss_pred ccccccccCCCCCCCccccccCCccCCCC-chhhhhhhccc
Q psy2523 158 KENTYKSFNPSSFPSPSEILDFGYPQNSD-TGVLKTFILQQ 197 (691)
Q Consensus 158 ke~~~~~~~~~~~~~~~E~~d~G~p~~~~-~~~Lk~~i~~~ 197 (691)
||+|+|+||+|+ .+.|+.++..+
T Consensus 116 -----------------E~id~G~~~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 116 -----------------EMFLAGEIRETSQTKVLKQLLMLQ 139 (142)
T ss_dssp -----------------HHEETTEECCCCHHHHHHHHHHHH
T ss_pred -----------------HHHhCCEEEEcCHHHHHHHHHhhh
Confidence 999999999985 67788887543
No 15
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.90 E-value=2.2e-23 Score=198.70 Aligned_cols=131 Identities=15% Similarity=0.261 Sum_probs=115.4
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCc-c---hhhHHH-HHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDI-G---RNAVDA-FRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNA 75 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~-~---~~~~~~-f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~ 75 (691)
||+++||+|++|+++++|+|+++. + +...++ +..++. +. .+|++..+++.++|+++++|||+++++.+.|+
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~--r~--~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNe 87 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH--RT--DSEIALLEGLTVVYKSSIDLYFYVIGSSYENE 87 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS--SC--CCCEEEETTEEEEEEECSSCEEEEEEETTSCH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CC--CCCEEEECCEEEEEEEECCEEEEEEEcCCCCh
Confidence 899999999999999999999863 2 344443 444542 32 37999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc-cccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCccccccchhhhHHHh
Q psy2523 76 AMVFEFLLKFIDVMQSYF-GKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIV 154 (691)
Q Consensus 76 ~~~~e~L~~~~~~l~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~~~~~~~~~~~~~~ 154 (691)
++++|+||+|++++..|| | .++|++|++||.++|++||
T Consensus 88 l~ile~L~~~ve~l~~yf~~---------------------~v~E~~I~~Nf~~vy~lLD-------------------- 126 (153)
T 3tjz_C 88 LMLMTVLNCLFDSLSQMLRK---------------------NVEKRALLENMEGLFLAVD-------------------- 126 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHTS---------------------CCCHHHHHHTHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHHHH--------------------
Confidence 999999999999999999 6 8999999999999999999
Q ss_pred hhcccccccccCCCCCCCccccccCCccCCCCchhhhhhhcc
Q psy2523 155 HDRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQ 196 (691)
Q Consensus 155 ~~~ke~~~~~~~~~~~~~~~E~~d~G~p~~~~~~~Lk~~i~~ 196 (691)
||+|+|+||.|+++.+...++.
T Consensus 127 --------------------E~id~G~~~eT~~~~I~~~v~~ 148 (153)
T 3tjz_C 127 --------------------EIVDGGVILESDPQQVVHRVAL 148 (153)
T ss_dssp --------------------HHEETTEECCCCHHHHHHTC--
T ss_pred --------------------HHHcCCEeeeCCHHHHHHHHhc
Confidence 9999999999999988877653
No 16
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3.1e-06 Score=88.70 Aligned_cols=207 Identities=15% Similarity=0.253 Sum_probs=131.3
Q ss_pred cceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEecCCC-------CeEEEEecccchhhccCCCCCCCCCccccCCCC
Q psy2523 229 RNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGM-------PECKFGINDKIVMEAKGGSSAKSSGLTVAGGDD 301 (691)
Q Consensus 229 kNEI~vDVvE~v~~i~~~~G~i~~~~V~G~I~~ks~LsG~-------P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~~~~~ 301 (691)
.-++-..|.|.|||.+.. |.+.++.|.|+|.+ +|..|. +.+.+.|++--.+++-. ++.
T Consensus 67 ~pGLnASI~E~VNA~Fkg-g~~tk~~v~GEiaL-sy~~~~~s~~p~p~~l~fRL~N~~~Lekv~-----------pN~-- 131 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFKD-GMLQNSQLIGEIAL-NYLPNSVMNSPLPIGINLRINNGAKFEKVI-----------LNQ-- 131 (328)
T ss_dssp CCEEEEEEEEEEEEEEET-TEEEEEEEEEEEEE-EEECCSSSCCCCCSEEEEEEETGGGEEEEE-----------ECT--
T ss_pred CCceeEEEEEEEEEEEEC-CcEEEEEEEEEEEE-ecCCCccccCCCCccEEEEecCcchhheee-----------CCH--
Confidence 457888999999999976 78999999999888 666652 45777776432222110 000
Q ss_pred CCCCCCCeeeeccc---cccccccccCcCccceEEEecCCCceEEEEEEecCCCCCCeEEEEEEE-ecCCeEEEEEEEEe
Q psy2523 302 VGRSGKPVVVIDDC---QFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVR-EATRTKMEVKVVLK 377 (691)
Q Consensus 302 ~~~~~~~~i~ldd~---~FH~cV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~~lPf~i~p~~~-~~~~~~vei~l~l~ 377 (691)
..+.+. .|+= ++.... .| .-.+++|+++. ...|+.+.|.-. +.....+-+.+++.
T Consensus 132 --------~fv~~~~~~eF~v--n~~~L~-sk---------tv~~lKYqVs~-~~~PL~l~p~WK~E~~qtsliI~Yk~N 190 (328)
T 3g9h_A 132 --------AFIERVAPEEFKV--NPSFID-SR---------TLGAIKYSIKE-PIAPIVIHPVWRFESHQASVVLTVKMS 190 (328)
T ss_dssp --------TTEEEEETTEEEE--CTTTTB-TC---------EEEEEEEEEES-CCCSEEEEEEEEECSSEEEEEEEEEEC
T ss_pred --------HHhccCCCCCEEE--chHHhc-cc---------ceeeEEEEECC-CCCCeEEEeeeecCCCeeEEEEEEEEC
Confidence 001111 1111 121111 12 24689999976 678999987543 22233455555556
Q ss_pred eccCc---ccccceEEEEEcCCC-CCcceEEEEeeeeEEEEccCCEEEEEEeE-e--cCCce-eEEEEEEEEeecCCCCC
Q psy2523 378 SQFKA---SLLGQKIEVRIPTPL-NTSGVQLICLKGKAKYKASENAIVWKIKR-M--AGMKE-TQLSAEIELLETDTKKK 449 (691)
Q Consensus 378 ~~~~~---~~~~~~V~I~iPlP~-~~~~~~~~~s~G~~~y~~~~~~l~W~I~k-l--~g~~e-~~l~~~~~l~~~~~~~~ 449 (691)
+.++. ....+||.|.+|+.. .++++... -.+.|..+++.+.|+|+. + ..+.+ ..|.|+|.+ ..... .
T Consensus 191 P~~~~~~~~~~L~Nv~~~V~ldGa~ats~qsk---P~gtwn~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~-~g~~~-~ 265 (328)
T 3g9h_A 191 PSLPDEISQIVIEDLVVFVNIDGANATSALSK---PQGSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFIT-DGLAH-E 265 (328)
T ss_dssp TTSCTTCCEEEEEEEEEEEEBCSSCEEEEEES---SSCCBCSSSCEEEEECSSCEEEETTCCCEEEEEEEEE-SSCCC-B
T ss_pred CCCcCcCCCceeeeEEEEEEeCCCceeEEEec---CCceeccccCEEEEECCCCcccccCCCCCeEEEEEEc-CCCCC-C
Confidence 66665 567899999999976 23343332 245789999999999998 3 32223 689999987 32211 1
Q ss_pred CCCCCeEEEEEee-c---------cCCCcEEEEEEeec
Q psy2523 450 WTRPPISMNFEVP-F---------APSGFKVRYLKVFE 477 (691)
Q Consensus 450 ~~~~pi~v~F~ip-~---------t~SGl~V~~L~V~e 477 (691)
....+.++|++. . .-|||.|..+...+
T Consensus 266 -~~~gV~akF~~~~~~~~~~~~~~~gsgi~i~~~~~~~ 302 (328)
T 3g9h_A 266 -SAKGVITKFTISETDNVALPHSGAGSGITLTCQELDE 302 (328)
T ss_dssp -CSSCEEEEEEECCCSCSSCTTTTCSCCCEEEEEEESS
T ss_pred -CCCcEEEEEEEeCCCcccccccccCCceeEEeccccc
Confidence 222399999998 4 46899999887754
No 17
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.59 E-value=2.9e-06 Score=80.88 Aligned_cols=42 Identities=17% Similarity=-0.033 Sum_probs=35.3
Q ss_pred eccccccCCccCCCcccccCCCcccccChHHHHHhhcccccc
Q psy2523 505 ENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVK 546 (691)
Q Consensus 505 e~~~k~~~~~~yelLdE~~D~G~pq~t~~~~Lk~~i~~~~~~ 546 (691)
|..++.++..+|++||||+|+||||.|+++.|+++|..++..
T Consensus 100 E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l 141 (158)
T 1w63_Q 100 ELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLL 141 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhh
Confidence 445544555899999999999999999999999999987653
No 18
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=97.23 E-value=1.9e-05 Score=74.85 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=30.9
Q ss_pred eccccccCCccCCCcccccCCCcccccChHHHHHhhccc
Q psy2523 505 ENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQ 543 (691)
Q Consensus 505 e~~~k~~~~~~yelLdE~~D~G~pq~t~~~~Lk~~i~~~ 543 (691)
|..+..++..+|+|||||+|+|+||.|+++.+.+.|...
T Consensus 111 E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~ 149 (153)
T 3tjz_C 111 KRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALR 149 (153)
T ss_dssp HHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcc
Confidence 444545556899999999999999999999999988643
No 19
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=97.22 E-value=1.2e-05 Score=75.14 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=32.2
Q ss_pred eeccccccCCccCCCcccccCCCccccc-ChHHHHHhhccc
Q psy2523 504 KENTYKSFNPSSFPSPSEILDFGYPQNS-DTGVLKTFILQQ 543 (691)
Q Consensus 504 ~e~~~k~~~~~~yelLdE~~D~G~pq~t-~~~~Lk~~i~~~ 543 (691)
.|..++.++..+|++||||+|+||||.| ++++||.++.++
T Consensus 99 ~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 99 CELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQ 139 (142)
T ss_dssp CHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhh
Confidence 3445545555899999999999999988 688999998654
No 20
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=79.00 E-value=12 Score=34.37 Aligned_cols=90 Identities=7% Similarity=0.154 Sum_probs=62.5
Q ss_pred eEEEEEEeCCCCEEEEEcccCCcc----hhhHHHHHHhhccc---cCCCCCC-eEEeCCEEEEEEeeCcEEEEEEEcCCc
Q psy2523 2 IGGLFVYNHKGEVLISRVYRDDIG----RNAVDAFRVNVIHA---RQQVRSP-VTNIARTSFFHIKRANIWLAAVTKQNV 73 (691)
Q Consensus 2 i~~i~I~~~~G~~li~r~y~~~~~----~~~~~~f~~~~~~~---~~~~~~p-i~~~~~~~~v~~~~~~l~lv~vt~~~~ 73 (691)
+.+|+|.|+.|=+|+.-...+... .+.+..|-...=.. .-+.... |-..++..+|+.....|++-.++.++.
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 579999999999999988866433 23444442211000 0123334 445678888999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhh
Q psy2523 74 NAAMVFEFLLKFIDVMQS 91 (691)
Q Consensus 74 n~~~~~e~L~~~~~~l~~ 91 (691)
|.-.++.+=..+..++.+
T Consensus 118 NtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 118 NTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CchhHhhhHHHHHHHHHH
Confidence 998888776666666654
No 21
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=75.29 E-value=8 Score=35.38 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=47.7
Q ss_pred CeEEEEEEeCCCCEEEEEc-ccCCcchhhHHHHHHhhccccC---CC---------CCCeEEe-------CCEEEEE--E
Q psy2523 1 MIGGLFVYNHKGEVLISRV-YRDDIGRNAVDAFRVNVIHARQ---QV---------RSPVTNI-------ARTSFFH--I 58 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~-y~~~~~~~~~~~f~~~~~~~~~---~~---------~~pi~~~-------~~~~~v~--~ 58 (691)
||.++.|.++.|++|..-. +..-.....+-+|...++.... +. .-+++.+ ++..+.| .
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 9999999999999998755 2223345678888888874321 11 3466776 6666655 4
Q ss_pred eeCcEEEEEEEc
Q psy2523 59 KRANIWLAAVTK 70 (691)
Q Consensus 59 ~~~~l~lv~vt~ 70 (691)
+.+.||+|++--
T Consensus 81 kQP~LyfVvtya 92 (158)
T 1nrj_A 81 KQPELYFVVTFA 92 (158)
T ss_dssp ETTEEEEEEEES
T ss_pred CCCcEEEEEEec
Confidence 778999998873
No 22
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=72.82 E-value=14 Score=34.01 Aligned_cols=92 Identities=10% Similarity=0.135 Sum_probs=56.2
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCc----c-hh----------hHHHHHHhhccccCCCCCCeEEeCCE-EEEEEeeCcEE
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDI----G-RN----------AVDAFRVNVIHARQQVRSPVTNIART-SFFHIKRANIW 64 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~----~-~~----------~~~~f~~~~~~~~~~~~~pi~~~~~~-~~v~~~~~~l~ 64 (691)
||.+++|+|+.|.+|.+|.|.... . .+ .+..+-.++........--.+.++.. .++|+...++.
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiK 81 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIK 81 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCE
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCE
Confidence 589999999999999999995432 1 11 11223233321111011123344554 55778888999
Q ss_pred EEEEEcCCcCHHHHHHHHHHHH-HHHhhccc
Q psy2523 65 LAAVTKQNVNAAMVFEFLLKFI-DVMQSYFG 94 (691)
Q Consensus 65 lv~vt~~~~n~~~~~e~L~~~~-~~l~~y~~ 94 (691)
||++|..+.+. +-++|+++. ++--+|.-
T Consensus 82 Fvl~td~~~~~--i~~~l~~iy~~lYv~~v~ 110 (145)
T 2j3t_C 82 VVMNTDLGVGP--IRDVLHHIYSALYVEFVV 110 (145)
T ss_dssp EEEEECTTCCC--CHHHHHHHHHTTHHHHTT
T ss_pred EEEEecCCcch--HHHHHHHHHHHHHHHHHh
Confidence 99999876554 346777777 56666543
No 23
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=71.21 E-value=31 Score=33.38 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=62.0
Q ss_pred eEEEEEEeCCCC-E-EEEEccc----CCcchhhHHHHH---HhhccccCCC-CCCeEEeCCEEEE-EEeeCcEEEEEEEc
Q psy2523 2 IGGLFVYNHKGE-V-LISRVYR----DDIGRNAVDAFR---VNVIHARQQV-RSPVTNIARTSFF-HIKRANIWLAAVTK 70 (691)
Q Consensus 2 i~~i~I~~~~G~-~-li~r~y~----~~~~~~~~~~f~---~~~~~~~~~~-~~pi~~~~~~~~v-~~~~~~l~lv~vt~ 70 (691)
|.+|.|+...|+ + ++...|. +...|+.+..|. .+.+..+... ..-.++.++..|- |...+++.++|++.
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~itd 83 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIAD 83 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEEEC
Confidence 567888876554 3 4455553 123477776653 2223222211 1114566777776 88889999999999
Q ss_pred CCcCHHHHHHHHHHHHHHHhhccc
Q psy2523 71 QNVNAAMVFEFLLKFIDVMQSYFG 94 (691)
Q Consensus 71 ~~~n~~~~~e~L~~~~~~l~~y~~ 94 (691)
++-.--..+.||..+.+-+..-++
T Consensus 84 ~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 84 SEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999888876665
No 24
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=68.38 E-value=31 Score=33.07 Aligned_cols=93 Identities=10% Similarity=0.045 Sum_probs=60.0
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCcchhhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeC--cEEEEEEEcCCcCHHHH
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRA--NIWLAAVTKQNVNAAMV 78 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~~~~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~--~l~lv~vt~~~~n~~~~ 78 (691)
|+..+.|+++.|=||-+..--.......+..+...++-.. ....+.+..++..+=|.-.+ +|.||+|-.+-.+...+
T Consensus 10 ~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEE-R~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Yi 88 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQE-RGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYV 88 (185)
T ss_dssp SCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC--------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHH
T ss_pred ceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcc-ccCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHH
Confidence 7889999999999998843233333556777776666331 12345677888777666555 78999998876666666
Q ss_pred HHHHHHHHHHHhhccc
Q psy2523 79 FEFLLKFIDVMQSYFG 94 (691)
Q Consensus 79 ~e~L~~~~~~l~~y~~ 94 (691)
=++|..+...+.+-++
T Consensus 89 D~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 89 DKLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666665554
No 25
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=67.21 E-value=72 Score=31.32 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCCEEEEEcccCCc
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRDDI 24 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~~~ 24 (691)
||.+|+|+|+.|..|.+|.|....
T Consensus 2 ~i~sl~IiNk~GglIY~r~~~~~~ 25 (219)
T 3cue_A 2 AIETILVINKSGGLIYQRNFTNDE 25 (219)
T ss_dssp CEEEEEEECTTSCEEEEEECSSCC
T ss_pred eeEEEEEEeCCCCEEeehhhccCc
Confidence 589999999999999999997554
No 26
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=67.19 E-value=45 Score=31.86 Aligned_cols=48 Identities=10% Similarity=0.216 Sum_probs=41.8
Q ss_pred eEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHhhccc
Q psy2523 47 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFG 94 (691)
Q Consensus 47 i~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~e~L~~~~~~l~~y~~ 94 (691)
.++.++..|.|...++|.++|++.++-..-..+.||..+.+-+..-++
T Consensus 54 s~~~~~y~fhy~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~ 101 (196)
T 2nut_C 54 TLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHG 101 (196)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCEEEEEEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhcc
Confidence 466788888898999999999999999999999999999887776555
No 27
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=66.73 E-value=30 Score=33.05 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=56.4
Q ss_pred CCCCEEEEEcccCCcchhhHHHHHHhhccccCC-CCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHHHHHHHHHHH
Q psy2523 10 HKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDV 88 (691)
Q Consensus 10 ~~G~~li~r~y~~~~~~~~~~~f~~~~~~~~~~-~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~e~L~~~~~~ 88 (691)
.+|.+++..+ -.. ..+ ...+-.+++...+. ..--.++.++..|-|...++|.++|++.++-.--..+.||..+.+-
T Consensus 10 Arg~~iLae~-t~~-~gn-f~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~e 86 (189)
T 4b93_A 10 ARGTTILAKH-AWC-GGN-FLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 86 (189)
T ss_dssp EETTEEEEEE-ESS-EEC-HHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred EeCCEEEEeC-CCC-CCC-HHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHHH
Confidence 4688888764 222 222 22222333322111 1122567899999999999999999999999999999999999988
Q ss_pred Hhhccc
Q psy2523 89 MQSYFG 94 (691)
Q Consensus 89 l~~y~~ 94 (691)
+..-+|
T Consensus 87 F~~~~~ 92 (189)
T 4b93_A 87 FQTTYG 92 (189)
T ss_dssp HHHHHG
T ss_pred HHhhcc
Confidence 877666
No 28
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=59.71 E-value=39 Score=31.81 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=42.7
Q ss_pred eEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHhhccc
Q psy2523 47 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFG 94 (691)
Q Consensus 47 i~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~e~L~~~~~~l~~y~~ 94 (691)
.++.++..|-|...++|.++|++.+.-.-...+.||.++.+-+..-++
T Consensus 87 s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~y~ 134 (169)
T 2vx8_A 87 TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYG 134 (169)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHHHHHHhh
Confidence 567788888888889999999999999999999999999998887666
No 29
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=51.73 E-value=77 Score=28.66 Aligned_cols=89 Identities=4% Similarity=0.023 Sum_probs=54.3
Q ss_pred eEEEEEEeCCCCEEEEEcccCCcch----hh-----------HHHHHHhhccccCCCCCCeEEeCC----EEEEEEeeCc
Q psy2523 2 IGGLFVYNHKGEVLISRVYRDDIGR----NA-----------VDAFRVNVIHARQQVRSPVTNIAR----TSFFHIKRAN 62 (691)
Q Consensus 2 i~~i~I~~~~G~~li~r~y~~~~~~----~~-----------~~~f~~~~~~~~~~~~~pi~~~~~----~~~v~~~~~~ 62 (691)
|.+++|++++|.+|..+.|....+. .. +|.+ .++.. .....-...++. ..+.|+...+
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv-~~~~~--~~~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLV-DENMW--LSNNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHH-HHHGG--GCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHH-HHhcC--CCCcceeEeeecccceEEEEEEcCCC
Confidence 5899999999999999999754321 01 1111 11111 111111223332 2467788889
Q ss_pred EEEEEEEcCCcCHHHHHHHHHHHHHHHhhccc
Q psy2523 63 IWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFG 94 (691)
Q Consensus 63 l~lv~vt~~~~n~~~~~e~L~~~~~~l~~y~~ 94 (691)
+-||+++... +.-.+-.+|+++.++--+|.-
T Consensus 83 ~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~ 113 (142)
T 2j3w_A 83 MRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAM 113 (142)
T ss_dssp CEEEEEESSC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhc
Confidence 9999999763 455566788888877666653
No 30
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=51.39 E-value=1e+02 Score=29.04 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=43.4
Q ss_pred eEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHhhccc
Q psy2523 47 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFG 94 (691)
Q Consensus 47 i~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~e~L~~~~~~l~~y~~ 94 (691)
.++.++..|-|...+++.++|++.+.-.--..+.||..+.+-+..-+|
T Consensus 97 t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~eF~~~yg 144 (173)
T 4afi_A 97 TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYG 144 (173)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHG
T ss_pred EEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHHHHHHHhc
Confidence 667899999999999999999999999999999999999988877666
No 31
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=50.35 E-value=36 Score=31.70 Aligned_cols=89 Identities=8% Similarity=0.247 Sum_probs=51.6
Q ss_pred CeEEEEEEeCCCCEEEEEcccC-------Cc----chh----------hHHHHHHhhccccCCCCCCe--EEeCC-EEEE
Q psy2523 1 MIGGLFVYNHKGEVLISRVYRD-------DI----GRN----------AVDAFRVNVIHARQQVRSPV--TNIAR-TSFF 56 (691)
Q Consensus 1 Mi~~i~I~~~~G~~li~r~y~~-------~~----~~~----------~~~~f~~~~~~~~~~~~~pi--~~~~~-~~~v 56 (691)
||.+|+|+|+.|.+|..|.|.. .. ..+ .+..|-.++... ....-+ ++++. .-++
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~--~~~~~f~~~~T~~ykl~~ 79 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKG--SVKNDIRSISTGKYRVHT 79 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCS--SSCCCEEEEECSSCBEEE
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCC--CCCCCeEEEeeCCEEEEE
Confidence 5889999999999999999943 11 100 012222222111 111122 23333 3446
Q ss_pred EEeeCcEEEEEEEcCCcCHHHHHHHHHHHHH-HHhhcc
Q psy2523 57 HIKRANIWLAAVTKQNVNAAMVFEFLLKFID-VMQSYF 93 (691)
Q Consensus 57 ~~~~~~l~lv~vt~~~~n~~~~~e~L~~~~~-~l~~y~ 93 (691)
|+..-++.||++|....+.+ -++|+++.+ +--+|.
T Consensus 80 ~eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~yv 115 (159)
T 3cue_C 80 YCTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKYV 115 (159)
T ss_dssp ECCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHHH
T ss_pred EEeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHHH
Confidence 67777999999998765543 356777776 666655
No 32
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=50.22 E-value=1.5e+02 Score=26.85 Aligned_cols=93 Identities=15% Similarity=0.066 Sum_probs=57.4
Q ss_pred eEEEEEEeCCC--CEEEEEcccC----CcchhhHHHHH----HhhccccCCCCCCeEEeCCEEEEEE-eeCcEEEEEEEc
Q psy2523 2 IGGLFVYNHKG--EVLISRVYRD----DIGRNAVDAFR----VNVIHARQQVRSPVTNIARTSFFHI-KRANIWLAAVTK 70 (691)
Q Consensus 2 i~~i~I~~~~G--~~li~r~y~~----~~~~~~~~~f~----~~~~~~~~~~~~pi~~~~~~~~v~~-~~~~l~lv~vt~ 70 (691)
|.++.|+-..+ -++++..+.- ...|+.+..|. +.++..-+...--.++.++..|-|. ..++|..+|+++
T Consensus 7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l~i~D 86 (144)
T 3bw6_A 7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITD 86 (144)
T ss_dssp EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEEEEEE
T ss_pred EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEEEEEC
Confidence 45666665432 3455554432 23466666552 2332111111112456677777666 778999999999
Q ss_pred CCcCHHHHHHHHHHHHHHHhhccc
Q psy2523 71 QNVNAAMVFEFLLKFIDVMQSYFG 94 (691)
Q Consensus 71 ~~~n~~~~~e~L~~~~~~l~~y~~ 94 (691)
++-.....+.||.++.+-+..=+|
T Consensus 87 ~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 87 KEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCChhHHHHHHHHHHHHHHHHcc
Confidence 999999999999988887765454
Done!