RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2523
(691 letters)
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Rattus
norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Length = 435
Score = 375 bits (964), Expect = e-124
Identities = 376/505 (74%), Positives = 401/505 (79%), Gaps = 73/505 (14%)
Query: 1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 60
MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFH+KR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 61 ANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEE 120
+NIWLAAVTKQNVNAAMVFEFL K DVM +YFGKISEENIKNN
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNN---------------- 104
Query: 121 NIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILDFG 180
FVLIYELLD EILDFG
Sbjct: 105 -----FVLIYELLD----------------------------------------EILDFG 119
Query: 181 YPQNSDTGVLKTFILQQGVKSQS--KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 238
YPQNS+TG LKTFI QQG+KSQ KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE
Sbjct: 120 YPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 179
Query: 239 YVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAG 298
VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E +G
Sbjct: 180 SVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG----------KGT 229
Query: 299 GDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRV 358
D+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFELMRYRTTKDI LPFRV
Sbjct: 230 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 289
Query: 359 IPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASEN 418
IPLVRE RTK+EVKVV+KS FK SLL QKIEVRIPTPLNTSGVQ+IC+KGKAKYKASEN
Sbjct: 290 IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASEN 349
Query: 419 AIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEP 478
AIVWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KVRYLKVFEP
Sbjct: 350 AIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEP 409
Query: 479 KLNYSDHDVIKWVRYIGRSGLYETR 503
KLNYSDHDVIKWVRYIGRSG+YETR
Sbjct: 410 KLNYSDHDVIKWVRYIGRSGIYETR 434
Score = 131 bits (330), Expect = 4e-33
Identities = 131/175 (74%), Positives = 144/175 (82%), Gaps = 12/175 (6%)
Query: 519 PSEILDFGYPQNSDTGVLKTFILQQGVKSQS--KEEQSQITSQVTGQIGWRREGIKYRRN 576
EILDFGYPQNS+TG LKTFI QQG+KSQ KEEQSQITSQVTGQIGWRREGIKYRRN
Sbjct: 112 LDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRN 171
Query: 577 ELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAK 636
ELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E +G
Sbjct: 172 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG----- 226
Query: 637 SSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691
D+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFELMR
Sbjct: 227 -----KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMR 276
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding
site, protein-peptide complex, clathrin adaptor; 2.50A
{Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A
3h85_A 1bxx_A 1hes_A 1h6e_A
Length = 314
Score = 316 bits (810), Expect = e-103
Identities = 263/323 (81%), Positives = 286/323 (88%), Gaps = 12/323 (3%)
Query: 183 QNSDTGVLKTFILQQGVKSQ--SKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYV 240
QNS+TG LKTFI QQG+KSQ +KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE V
Sbjct: 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 60
Query: 241 NLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGD 300
NLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E +G + D
Sbjct: 61 NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT----------AD 110
Query: 301 DVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIP 360
+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFELMRYRTTKDI LPFRVIP
Sbjct: 111 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIP 170
Query: 361 LVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAI 420
LVRE RTK+EVKVV+KS FK SLL QKIEVRIPTPLNTSGVQ+IC+KGKAKYKASENAI
Sbjct: 171 LVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAI 230
Query: 421 VWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKL 480
VWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KVRYLKVFEPKL
Sbjct: 231 VWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKL 290
Query: 481 NYSDHDVIKWVRYIGRSGLYETR 503
NYSDHDVIKWVRYIGRSG+YETR
Sbjct: 291 NYSDHDVIKWVRYIGRSGIYETR 313
Score = 155 bits (393), Expect = 1e-42
Identities = 123/165 (74%), Positives = 138/165 (83%), Gaps = 12/165 (7%)
Query: 529 QNSDTGVLKTFILQQGVKSQ--SKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYV 586
QNS+TG LKTFI QQG+KSQ +KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE V
Sbjct: 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 60
Query: 587 NLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGD 646
NLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E +G + D
Sbjct: 61 NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT----------AD 110
Query: 647 DVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691
+ +SGK + IDDC FHQCV+LSKF++E SISFIPPDGEFELMR
Sbjct: 111 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMR 155
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 423
Score = 313 bits (801), Expect = e-100
Identities = 170/504 (33%), Positives = 257/504 (50%), Gaps = 87/504 (17%)
Query: 2 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHA-RQQVRSPVTNIARTSFFHIKR 60
++V + KG+VLI R YR D+ + V+ F ++ + + SP+ F IK
Sbjct: 3 ASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKH 62
Query: 61 ANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEE 120
N++L A +K+N ++VF FL K + V YF ++ EE+I++NF
Sbjct: 63 NNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNF--------------- 107
Query: 121 NIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILDFG 180
V+IYELLD E++DFG
Sbjct: 108 ------VIIYELLD----------------------------------------ELMDFG 121
Query: 181 YPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYV 240
YPQ +D+ +L+ FI Q+G K ++ + + VT + WR EGIKYR+NE+FLDV+E V
Sbjct: 122 YPQTTDSKILQEFITQEGHKLETGAPRPP--ATVTNAVSWRSEGIKYRKNEVFLDVIEAV 179
Query: 241 NLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGD 300
NLL+S G L + + G + M+ +LSGMPE + G+NDK++ + G +KS
Sbjct: 180 NLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKS--------- 230
Query: 301 DVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIP 360
V ++D +FHQCV+LS+FE + +ISFIPPDGEFELM YR + +
Sbjct: 231 ---------VELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIES 281
Query: 361 LVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAI 420
++ + + +++E V KSQFK +E+ IP P + + G K+ + I
Sbjct: 282 VIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEI 341
Query: 421 VWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVRYLKVFEPK 479
VW +K G KE + A L + + K +PPIS+ FE+P F SG +VRYLK+ E
Sbjct: 342 VWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK- 400
Query: 480 LNYSDHDVIKWVRYIGRSGLYETR 503
S + I WVRYI ++G Y+ R
Sbjct: 401 ---SGYQAIPWVRYITQNGDYQLR 421
Score = 113 bits (283), Expect = 5e-27
Identities = 77/171 (45%), Positives = 111/171 (64%), Gaps = 20/171 (11%)
Query: 521 EILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFL 580
E++DFGYPQ +D+ +L+ FI Q+G K ++ + + VT + WR EGIKYR+NE+FL
Sbjct: 116 ELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPP--ATVTNAVSWRSEGIKYRKNEVFL 173
Query: 581 DVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGL 640
DV+E VNLL+S G L + + G + M+ +LSGMPE + G+NDK++ + G +KS
Sbjct: 174 DVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKS--- 230
Query: 641 TVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR 691
V ++D +FHQCV+LS+FE + +ISFIPPDGEFELM
Sbjct: 231 ---------------VELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMS 266
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin
adaptor AP-2 complex...; dishevelled, frizzled
internalization; 3.50A {Mus musculus}
Length = 385
Score = 290 bits (743), Expect = 3e-92
Identities = 230/353 (65%), Positives = 263/353 (74%), Gaps = 33/353 (9%)
Query: 174 SEILDF------GYPQNSDTGVLKTFILQQGVKSQSKEEQSQITS--------------- 212
S+++D+ G+P+ + + +L+ G+ + + +
Sbjct: 42 SDVVDWLYHHVEGFPERREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDLSGGPRPY 101
Query: 213 --QVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPE 270
Q G RNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPE
Sbjct: 102 SPQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPE 161
Query: 271 CKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEH 330
CKFG+NDKIV+E +G D+ +SGK + IDDC FHQCV+LSKF++E
Sbjct: 162 CKFGMNDKIVIEKQG----------KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSER 211
Query: 331 SISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIE 390
SISFIPPDGEFELMRYRTTKDI LPFRVIPLVRE RTK+EVKVV+KS FK SLL QKIE
Sbjct: 212 SISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIE 271
Query: 391 VRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKW 450
VRIPTPLNTSGVQ+IC+KGKAKYKASENAIVWKIKRMAGMKE+Q+SAEIELL T+ KKKW
Sbjct: 272 VRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW 331
Query: 451 TRPPISMNFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 503
RPPISMNFEVPFAPSG KVRYLKVFEPKLNYSDHDVIKWVRYIGRSG+YETR
Sbjct: 332 ARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 384
Score = 124 bits (311), Expect = 6e-31
Identities = 90/195 (46%), Positives = 115/195 (58%), Gaps = 33/195 (16%)
Query: 520 SEILDF------GYPQNSDTGVLKTFILQQGVKSQSKEEQSQITS--------------- 558
S+++D+ G+P+ + + +L+ G+ + + +
Sbjct: 42 SDVVDWLYHHVEGFPERREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDLSGGPRPY 101
Query: 559 --QVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPE 616
Q G RNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPE
Sbjct: 102 SPQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPE 161
Query: 617 CKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEH 676
CKFG+NDKIV+E +G D+ +SGK + IDDC FHQCV+LSKF++E
Sbjct: 162 CKFGMNDKIVIEKQG----------KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSER 211
Query: 677 SISFIPPDGEFELMR 691
SISFIPPDGEFELMR
Sbjct: 212 SISFIPPDGEFELMR 226
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV,
NEF, antigen presentation, HOST defense, adaptor protein
complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Length = 266
Score = 244 bits (623), Expect = 5e-76
Identities = 110/285 (38%), Positives = 161/285 (56%), Gaps = 23/285 (8%)
Query: 220 WRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKI 279
WR EGIKYR+NE+FLDV+E VNLL+S G L + + G + M+ +LSGMPE + G+NDK+
Sbjct: 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKV 61
Query: 280 VMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDG 339
+ + G +KS V ++D +FHQCV+LS+FE + +ISFIPPDG
Sbjct: 62 LFDNTGRGKSKS------------------VELEDVKFHQCVRLSRFENDRTISFIPPDG 103
Query: 340 EFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNT 399
EFELM YR + + ++ + + +++E V KSQFK +E+ IP P +
Sbjct: 104 EFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDA 163
Query: 400 SGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNF 459
+ G K+ + IVW +K G KE + A L + + K +PPIS+ F
Sbjct: 164 DSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKF 223
Query: 460 EVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 503
E+P F SG +VRYLK+ E + + WVRYI ++G Y+ R
Sbjct: 224 EIPYFTTSGIQVRYLKIIEKS----GYQALPWVRYITQNGDYQLR 264
Score = 114 bits (287), Expect = 1e-28
Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 18/126 (14%)
Query: 566 WRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKI 625
WR EGIKYR+NE+FLDV+E VNLL+S G L + + G + M+ +LSGMPE + G+NDK+
Sbjct: 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKV 61
Query: 626 VMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDG 685
+ + G +KS V ++D +FHQCV+LS+FE + +ISFIPPDG
Sbjct: 62 LFDNTGRGKSKS------------------VELEDVKFHQCVRLSRFENDRTISFIPPDG 103
Query: 686 EFELMR 691
EFELM
Sbjct: 104 EFELMS 109
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich,
coated PIT, golgi apparat membrane, phosphoprotein,
protein transport, transport; 1.60A {Homo sapiens}
Length = 301
Score = 242 bits (617), Expect = 1e-74
Identities = 73/320 (22%), Positives = 140/320 (43%), Gaps = 34/320 (10%)
Query: 198 GVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAG 257
G ++ S + + ++NE+FLDV+E +++L++ G L V G
Sbjct: 1 GAMDPEFQQSKVAPSSAASRPVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQG 60
Query: 258 KVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQF 317
++ +KS+L E + G+ ++ + G R P + +D+ F
Sbjct: 61 EIRLKSFLPSGSEMRIGLTEEFSV-----------------GKSELRGYGPGIRVDEVSF 103
Query: 318 HQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDI--ALPFRVIPLV-REATRTKMEVKV 374
H V L +FE+ + PP GE +MRY+ + D+ LPFR+ P V + +++V +
Sbjct: 104 HSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYL 163
Query: 375 VLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQ 434
L+ + + + +P P + + K + +E A+ W + R+ G +
Sbjct: 164 KLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAELAEGALRWDLPRVQGGSQLS 223
Query: 435 LSAEIEL---------LETDTKKKWTRPPISMNFEVP-FAPSGFKVRYLKVFE-PKLNYS 483
++++ + + P S++FE+P SG +VR+L++ P N +
Sbjct: 224 GLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLRLAFRPSGNAN 283
Query: 484 DHDVIKWVRYIGRSGLYETR 503
H KWVR++ S Y R
Sbjct: 284 PH---KWVRHLSHSDAYVIR 300
Score = 120 bits (301), Expect = 3e-30
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 544 GVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAG 603
G ++ S + + ++NE+FLDV+E +++L++ G L V G
Sbjct: 1 GAMDPEFQQSKVAPSSAASRPVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQG 60
Query: 604 KVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQF 663
++ +KS+L E + G+ ++ + G R P + +D+ F
Sbjct: 61 EIRLKSFLPSGSEMRIGLTEEFSV-----------------GKSELRGYGPGIRVDEVSF 103
Query: 664 HQCVKLSKFETEHSISFIPPDGEFELMR 691
H V L +FE+ + PP GE +MR
Sbjct: 104 HSSVNLDEFESHRILRLQPPQGELTVMR 131
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Mus
musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Length = 142
Score = 95.0 bits (236), Expect = 3e-23
Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 64/200 (32%)
Query: 1 MIGGLFVYNHKGEVLISRVYR--DDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 58
MI + + N G+ +++ Y DD + + V+ R + +
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 59 KRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKIS 118
+ A ++ N N E + + F++V+ YF +
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAI---------------------HNFVEVLNEYFHNVC 99
Query: 119 EENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILD 178
E ++ NF +Y ++D E+
Sbjct: 100 ELDLVFNFYKVYTVVD----------------------------------------EMFL 119
Query: 179 FGYPQNSD-TGVLKTFILQQ 197
G + + T VLK ++ Q
Sbjct: 120 AGEIRETSQTKVLKQLLMLQ 139
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 158
Score = 92.9 bits (230), Expect = 3e-22
Identities = 28/215 (13%), Positives = 67/215 (31%), Gaps = 64/215 (29%)
Query: 1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFR--VNVIHARQQVRSPVTNIARTSFFHI 58
M+ + +++ +G++ + + Y + R + V+ AR+ +
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 59 KRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKIS 118
+ A+++ + N + E + + +++++ YFG +
Sbjct: 61 RYASLYFCCAIEGQDNELITLELI---------------------HRYVELLDKYFGSVC 99
Query: 119 EENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILD 178
E +I NF Y +LD E L
Sbjct: 100 ELDIIFNFEKAYFILD----------------------------------------EFLM 119
Query: 179 FGYPQNSDT-GVLKTFILQQGVKSQSKEEQSQITS 212
G Q++ VLK ++ + + +S +
Sbjct: 120 GGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEE 154
Score = 30.9 bits (69), Expect = 0.66
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 521 EILDFGYPQNSDT-GVLKTFILQQGVKSQSKEEQSQITS 558
E L G Q++ VLK ++ + + +S +
Sbjct: 116 EFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEE 154
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 9e-10
Identities = 70/553 (12%), Positives = 160/553 (28%), Gaps = 159/553 (28%)
Query: 77 MVFEFLLKFIDVMQSYFGKI---SEENIKNNF-FIDVMQSYFGKISEENIKNNFVLIYEL 132
M FE Q + I E+ +NF DV +S+E I
Sbjct: 7 MDFE-----TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI---------- 51
Query: 133 LDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKT 192
D + + + + ++E + F E+L Y
Sbjct: 52 --DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-------VEEVLRINYK---------- 92
Query: 193 FILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLS 252
F++ +K++ ++ + +R+ L+ D +
Sbjct: 93 FLMSP-IKTEQRQPSMMTRMYI------------EQRDRLYNDNQVFAKY---------- 129
Query: 253 AHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVI 312
+V+ + + + +E + + + + G V SGK V +
Sbjct: 130 -NVS-----------RLQPYLKLRQAL-LELR-----PAKNVLIDG---VLGSGKTWVAL 168
Query: 313 DDCQFHQCVKLSKFETEHSISF---IPPDGEFELMR---YRTTKD-IALPFRVIPLVREA 365
D C ++ F+ ++ P+ E+++ Y+ + + +
Sbjct: 169 DVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 366 TRTKMEVKVVLKS-QFKASLLGQKI--EVRIPTPLNTSGVQ---LICLKGKAKYKASENA 419
+ E++ +LKS ++ LL + V+ N + L+ +
Sbjct: 228 HSIQAELRRLLKSKPYENCLL---VLLNVQNAKAWNAFNLSCKILL---------TTRFK 275
Query: 420 IVWKIKRMAGMKETQLSAEIE---LLETDTKK---KW--TRP---PISMNFEVPFAPSGF 468
V ++ T +S + L + K K+ RP P + P S
Sbjct: 276 QV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 469 KVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRKENTYKSFNPSSFPSPSEILDFGYP 528
++ + W +++ L E++ P+E +
Sbjct: 334 -AESIRDGLATWDN-------W-KHVNCDKLTTII-ESSLNVLE------PAEYRKM-F- 375
Query: 529 QNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNL 588
+ + I + + + W + + ++ L +L
Sbjct: 376 -------DRLSVFPPSAH---------IPTILL-SLIW--FDVIKSDVMVVVNKLHKYSL 416
Query: 589 LM-SPQGQTLSAH 600
+ P+ T+S
Sbjct: 417 VEKQPKESTISIP 429
Score = 56.8 bits (136), Expect = 2e-08
Identities = 91/630 (14%), Positives = 178/630 (28%), Gaps = 201/630 (31%)
Query: 71 QNVNAAMVFEFLLKFI------DVMQSYFGKISEENIKNNFFI-----DVMQSY--FGKI 117
Q ++ F F+ DV +S+E I + I V + F +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH---IIMSKDAVSGTLRLFWTL 71
Query: 118 --SEENIKNNFVLIYELLDDRY------LGMES---ERGRASYILKIVHDRKENTYKSFN 166
+E + FV E+L Y + E YI + DR N + F
Sbjct: 72 LSKQEEMVQKFV--EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVFA 127
Query: 167 PSSFPSPSEILDFGYPQNSDTGVLKTFILQ----QGV---------KS-------QSKEE 206
+ L L+ +L+ + V K+ S +
Sbjct: 128 KYNVSRLQPYLK-----------LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 207 QSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVA--------GK 258
Q ++ +I W E L++L+ + + P + S H + +
Sbjct: 177 QCKMD----FKIFWLNLK-NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 259 VVMKSYLSGM--PEC--------------KFGIN--------DKIVMEAKGGSSAK---- 290
++ L C F ++ K V + ++
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 291 ---SSGLTVAGGDDV---------------GRSGKPVVV----------IDDCQFHQCVK 322
S LT + + P + + + V
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 323 LSKFET--EHSISFIPPDGEFELMRYRT----TKDIALPFRVIPLV-REATRTKMEVKVV 375
K T E S++ + P E+ + +P ++ L+ + ++ +V VV
Sbjct: 352 CDKLTTIIESSLNVLEPA-EYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIKS--DVMVV 407
Query: 376 LKSQFKASLL---GQKIEVRIPTPLNTSGVQLICLKGKAKYKAS-ENAIVWKIKRMAGMK 431
+ K SL+ ++ + IP + L LK K + + + +IV
Sbjct: 408 VNKLHKYSLVEKQPKESTISIP------SIYLE-LKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 432 ETQLSAEIE-----------LLETDTKKKWTR-PPISMNFEVPFAPSGFKVRYLKVFEPK 479
L L + ++ T + ++F R+L+ K
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-----------RFLEQ---K 506
Query: 480 LNYSD-------------HDVIKWVRYIGRSGLYETRKENTYKSFNPSSFPSPSEILDFG 526
+ + + + YI + R N F P E L
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF----LPKIEENL--- 559
Query: 527 YPQNSDTGVLKTFILQQGVKSQSKEEQSQI 556
+ T +L+ L ++ +E Q+
Sbjct: 560 -ICSKYTDLLR-IALMAEDEAIFEEAHKQV 587
Score = 39.1 bits (90), Expect = 0.006
Identities = 29/207 (14%), Positives = 65/207 (31%), Gaps = 45/207 (21%)
Query: 500 YET-RKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKT----FILQQG-VKSQS---- 549
+ET + YK + + D Q+ +L I+ S +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 550 ---KEEQSQITSQVTGQI-----GWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHV 601
+Q ++ + ++ + IK + + + Y+ Q +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-------QRDRLYN 121
Query: 602 AGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDC 661
+V K +S + + + +E + + + + G V SGK V +D C
Sbjct: 122 DNQVFAKYNVS-RLQPYLKLRQAL-LELR-----PAKNVLIDG---VLGSGKTWVALDVC 171
Query: 662 QFH--QC--------VKLSKFETEHSI 678
+ QC + L + ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETV 198
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus} PDB: 2hf6_A
Length = 153
Score = 55.0 bits (132), Expect = 4e-09
Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 21/135 (15%)
Query: 1 MIGGLFVYNHKGEVLISRVYRDDIGRNAV-DAFRVNVIHARQQVRSPVTNIARTSFFHIK 59
+ + + ++ G+ L ++ Y D AF N+ + + S + + + +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKS 71
Query: 60 RANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISE 119
+++ + N M+ L D + + +
Sbjct: 72 SIDLYFYVIGSSYENELMLMTVLNCLFDSLSQML--------------------RKNVEK 111
Query: 120 ENIKNNFVLIYELLD 134
+ N ++ +D
Sbjct: 112 RALLENMEGLFLAVD 126
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 5e-08
Identities = 60/392 (15%), Positives = 111/392 (28%), Gaps = 135/392 (34%)
Query: 19 VYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANI--WLAAVTKQNVNAA 76
+Y V + + + + + + NI WL +N +
Sbjct: 176 LY--QTYHVLVGDL---IKFSAETLSELIRTTLDAEKVFTQGLNILEWL-----ENPSNT 225
Query: 77 MVFEFL------LKFIDVMQ--SY--FGKISEENIKNNFFIDVMQSYFGKI--------- 117
++L I V+Q Y K+ ++ G
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE--LRSYLKGATGHSQGLVTAVAI 283
Query: 118 ----SEENIKNNFVLIYELLDDRYLGMESER--------------------GRASYILKI 153
S E+ + +L ++G+ G S +L I
Sbjct: 284 AETDSWESFFVSVRKAITVL--FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 154 VH-DRK--ENTYKSFNPSSFPSPSEI---L-----DF---GYPQNSDTGVLKTFILQ-QG 198
+ ++ ++ N S P+ ++ L + G PQ+ L L +
Sbjct: 342 SNLTQEQVQDYVNKTN-SHLPAGKQVEISLVNGAKNLVVSGPPQS-----LYGLNLTLRK 395
Query: 199 VKSQSKEEQSQIT-SQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSA--HV 255
K+ S +QS+I S+ R+ R FL V ++ H
Sbjct: 396 AKAPSGLDQSRIPFSE-------RKLKFSNR----FLPV---------------ASPFH- 428
Query: 256 AGKVVMKSYLSGMPECKFGINDKIVMEAKGGS---SAKSSGLTV---AGGDDVGRSGKPV 309
L +D I + + +AK + V G D+ R
Sbjct: 429 ------SHLLV-------PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVLSGS 474
Query: 310 VV--IDDCQFHQCV---KLSKFETEHSISFIP 336
+ I DC V ++F+ H + F P
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Score = 53.1 bits (127), Expect = 3e-07
Identities = 91/564 (16%), Positives = 171/564 (30%), Gaps = 193/564 (34%)
Query: 105 FFIDVMQSYFGKI----SEENIKNN-FVLIYELLDDRYLGM------ESERGRASYILKI 153
F +Q F KI +E ++ EL+ ++LG S+ G+ +L +
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG-KFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 154 VHDRKENTYKSFNP-----SSFPSPSEILDFGYPQNSDTGVLKTFI--LQQGVKSQSKEE 206
EN Y N + ++ ++K +I + K+
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDT-----TLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 207 QSQITSQVT-----------GQIGWRREGIKYRRNELFLDVLE-----Y---VNLLMSPQ 247
S + V GQ G + + + L Y V L+
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQ------GN----TDDYFEELRDLYQTYHVLVGDLIKFS 191
Query: 248 GQTLSAHVAGKV-----------VMK-----------SYLSGMP---------------- 269
+TLS + + +++ YL +P
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 270 ECK-FGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVI---DD-----CQFHQC 320
K G + G++ S GL A V I D +
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTA------------VAIAETDSWESFFVSVRKA 299
Query: 321 VKLSKF-------ETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPL--VREATRTKME 371
+ + F E + + +PP ++ + +P P+ + T+ +++
Sbjct: 300 ITVL-FFIGVRCYEA-YPNTSLPP----SILEDSLENNEGVP---SPMLSISNLTQEQVQ 350
Query: 372 VKVVLKSQFKASL-LGQKIEVRI---PTPLNTSG--VQLICLKGKAKYKASENAIVWKIK 425
V ++ + L G+++E+ + L SG L L N + K K
Sbjct: 351 DYV---NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL----------NLTLRKAK 397
Query: 426 RMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVRYLKVFEPKLNYSD 484
+G+ +++ I +++K S F +P +P F L + +
Sbjct: 398 APSGLDQSR----IPF----SERK---LKFSNRF-LPVASP--FHSHLLVPASDLI---N 440
Query: 485 HDVIKWVRYIGRSGL----YETRKENTYKSFNPS----------SFP---------SPSE 521
D++K + Y+T + + + S P +
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 522 ILDFGYP-QNSDTGVLKTFILQQG 544
ILDFG P S GVL T + G
Sbjct: 501 ILDFG-PGGASGLGVL-THRNKDG 522
Score = 51.6 bits (123), Expect = 9e-07
Identities = 78/478 (16%), Positives = 130/478 (27%), Gaps = 194/478 (40%)
Query: 339 GEFELMRYRTTKDI-ALPFRVIPLVREATRTKMEVKVVLKSQFKA-SLLGQKIEVRIPTP 396
EFE Y DI AL L++E T ++ K ++K+ A + + + + +
Sbjct: 89 TEFE-NCYLEGNDIHAL---AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 397 LNTSGVQLICLKGKAK---------------------YKASENAIVWKIKRMAGMKETQL 435
L + +G A+ Y+ + IK A L
Sbjct: 145 LFRA-----VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET----L 195
Query: 436 SAEIELLETDTK--------KKW-----TRP--------PISM---------NFEVPFAP 465
S I K +W P PIS ++ V
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 466 SGFKVRYLKVF----------------------EPKLNYSDHDVIKWVRYIG-RS----- 497
GF L+ + S I + +IG R
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 498 ---------------------------GLYETRKENTYKSFNPSSFPSPSEI---L---- 523
L + + ++ N S P+ ++ L
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVNGA 374
Query: 524 -DF---GYPQNSDTGVLKTFILQ-QGVKSQSKEEQSQIT-SQVTGQIGWRREGIKYRRNE 577
+ G PQ+ L L + K+ S +QS+I S+ R+ R
Sbjct: 375 KNLVVSGPPQS-----LYGLNLTLRKAKAPSGLDQSRIPFSE-------RKLKFSNR--- 419
Query: 578 LFLDVLEYVNLLMSPQGQTLSA--HVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGS-- 633
FL V ++ H L +D I + +
Sbjct: 420 -FLPV---------------ASPFH-------SHLLV-------PASDLINKDLVKNNVS 449
Query: 634 -SAKSSGLTV---AGGDDVGRSGKPVVV--IDDCQFHQCV---KLSKFETEHSISFIP 682
+AK + V G D+ R + I DC V ++F+ H + F P
Sbjct: 450 FNAKDIQIPVYDTFDGSDL-RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Score = 40.8 bits (95), Expect = 0.002
Identities = 61/352 (17%), Positives = 110/352 (31%), Gaps = 128/352 (36%)
Query: 124 NNFVLIYELLD--DRYLGMESERGRASY---ILKIVHDRKENTYKSFNPSSFPSPSEILD 178
++ + D + + +Y IL IV + NP + +
Sbjct: 1637 KTSKAAQDVWNRADNHF-------KDTYGFSILDIVIN---------NP-----VNLTIH 1675
Query: 179 FGYPQNSDTGVLKTFILQQGVKSQS-KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVL 237
FG G K + +E S + + +G K + ++F ++
Sbjct: 1676 FG-----------------GEKGKRIRENYSAMIFETI------VDG-KLKTEKIFKEIN 1711
Query: 238 EYVNLLM--SPQG---QT-------LSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKG 285
E+ S +G T A +KS K I A G
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS--------KGLIPADATF-A-G 1761
Query: 286 GS----SAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKF--ETEHSISFIPPDG 339
S +A +S +A V+ V++ + T + P
Sbjct: 1762 HSLGEYAALAS---LAD------------VMS---IESLVEVVFYRGMT---MQVAVPRD 1800
Query: 340 EFELMRYRTTKDIAL-PFRVIP-LVREATRTKMEVKVVLKSQFKASLLGQKIEV--RIPT 395
E Y IA+ P RV +EA ++ V++ K + G +E+
Sbjct: 1801 ELGRSNYG---MIAINPGRVAASFSQEA------LQYVVERVGKRT--GWLVEIVN---- 1845
Query: 396 PLNTSGVQLICLKG--KAKYKASE--NAIVWKIKRMAGMKETQLSAEIELLE 443
N Q + G +A + N I K++++ + E Q S +E +E
Sbjct: 1846 -YNVENQQYVA-AGDLRALDTVTNVLNFI--KLQKID-IIELQKSLSLEEVE 1892
Score = 35.8 bits (82), Expect = 0.054
Identities = 69/425 (16%), Positives = 121/425 (28%), Gaps = 160/425 (37%)
Query: 37 IHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVF-------EFLLKFIDVM 89
I AR + P + ++ F AV + N +F ++ + D+
Sbjct: 127 ITARIMAKRPFDKKSNSALFR---------AVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 90 QSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVL-----IYELLDDRYLGMESER 144
Q+Y + + I ++ + V I E L++ S
Sbjct: 178 QTYHVLVGD-------LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN-----PSNT 225
Query: 145 GRASYILKIVHDRKENTYKSFNPSSFP-------------------SPSEILDF-----G 180
Y+L I P S P +P E+ + G
Sbjct: 226 PDKDYLLSI-------------PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 181 YPQN---------SDTG------VLK--TFILQQGVKSQSKEEQSQITSQVTGQIGWRRE 223
+ Q +D+ V K T + GV+ + + + E
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 224 G-------IK-YRRNELFLDVLEYVNLLMSPQGQTLSAHVA---GK---VVMKSYLSGMP 269
G I + ++ D + N + P G+ + ++ G VV SG P
Sbjct: 333 GVPSPMLSISNLTQEQVQ-DYVNKTNSHL-PAGKQV--EISLVNGAKNLVV-----SGPP 383
Query: 270 ECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETE 329
+ +G+N + G D R P F + + KF
Sbjct: 384 QSLYGLNLTL------------RKAKAPSGLDQSR--IP--------FSE--RKLKF--- 416
Query: 330 HSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKI 389
S F+P +A PF L+ A+ + V F A +
Sbjct: 417 -SNRFLP---------------VASPFHS-HLLVPASDLINKDLVKNNVSFNAKDI---- 455
Query: 390 EVRIP 394
+IP
Sbjct: 456 --QIP 458
Score = 32.3 bits (73), Expect = 0.71
Identities = 50/236 (21%), Positives = 79/236 (33%), Gaps = 80/236 (33%)
Query: 24 IGRNAVDAFRVNVIHAR---------QQVRSP---VTNIARTSFF-HIKRANIWLAAVTK 70
IG +A+ + + V SP ++N+ + ++ + N L A K
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA-GK 364
Query: 71 Q----NVNAAMVFEFLLKFIDVM----QSYFG-KISEENIKNNFFIDVMQSYFGKI--SE 119
Q VN A V+ QS +G ++ K +D QS +I SE
Sbjct: 365 QVEISLVNGAKNL--------VVSGPPQSLYGLNLTLRKAKAPSGLD--QS---RIPFSE 411
Query: 120 ENIK--NNFVLIY-----ELLDD------RYLGMESERGRASYILKI-VHD-------RK 158
+K N F+ + LL + L + A ++I V+D R
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD-IQIPVYDTFDGSDLRV 470
Query: 159 ENTYKSFNPSSFP---------------SPSEILDFGYP-QNSDTGVLKTFILQQG 198
+ S + + ILDFG P S GVL T + G
Sbjct: 471 LSG--SISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGASGLGVL-THRNKDG 522
Score = 31.2 bits (70), Expect = 1.5
Identities = 14/55 (25%), Positives = 17/55 (30%), Gaps = 15/55 (27%)
Query: 7 VYN-HKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPV--TNIARTSFFHI 58
VY+ G L RV I VD +R PV + HI
Sbjct: 459 VYDTFDGSDL--RVLSGSISERIVD----------CIIRLPVKWETTTQFKATHI 501
Score = 31.2 bits (70), Expect = 1.6
Identities = 20/111 (18%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 12 GEVLISRVYRDDIGR-----NAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRAN---- 62
G + V RD++GR A++ RV +++ ++ V + + + + ++ N
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 63 --IWLAAVTKQNVNAAM-VFEFL----LKFIDVMQSYFGKISEENIKNNFF 106
++AA + ++ V F+ + I++ +S +S E ++ + F
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS----LSLEEVEGHLF 1896
Score = 29.6 bits (66), Expect = 4.6
Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 30/112 (26%)
Query: 507 TYKSFNPSSFPSPSEILDFGYPQNSDTGVLK-TFILQQGVKSQSKEEQSQITSQVTGQIG 565
++ S P+ F Q L+ F ++ + T+
Sbjct: 12 SHGSLEHV-LLVPTASF-FIASQ------LQEQFNKILPEPTEGFAADDEPTTPA----- 58
Query: 566 WRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMK----SYLSG 613
EL L YV+ L+ P V + + YL G
Sbjct: 59 -----------ELVGKFLGYVSSLVEPSKVGQFDQVL-NLCLTEFENCYLEG 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.2
Identities = 4/19 (21%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 501 ETRK-ENTYKSFNPSSFPS 518
+K + + K + S P+
Sbjct: 21 ALKKLQASLKLYADDSAPA 39
Score = 29.1 bits (64), Expect = 2.6
Identities = 4/17 (23%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 157 RK-ENTYKSFNPSSFPS 172
+K + + K + S P+
Sbjct: 23 KKLQASLKLYADDSAPA 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,359,465
Number of extensions: 629777
Number of successful extensions: 1267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1226
Number of HSP's successfully gapped: 38
Length of query: 691
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 591
Effective length of database: 3,909,693
Effective search space: 2310628563
Effective search space used: 2310628563
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.9 bits)