RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2523
(691 letters)
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit
(ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 277
Score = 317 bits (814), Expect = e-104
Identities = 233/286 (81%), Positives = 252/286 (88%), Gaps = 10/286 (3%)
Query: 218 IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGIND 277
IGWRREGIKYRRNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+ND
Sbjct: 1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60
Query: 278 KIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPP 337
KIV+E +G D+ +SGK + IDDC FHQCV+LSKF++E SISFIPP
Sbjct: 61 KIVIEKQG----------KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPP 110
Query: 338 DGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPL 397
DGEFELMRYRTTKDI LPFRVIPLVRE RTK+EVKVV+KS FK SLL QKIEVRIPTPL
Sbjct: 111 DGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPL 170
Query: 398 NTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISM 457
NTSGVQ+IC+KGKAKYKASENAIVWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISM
Sbjct: 171 NTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISM 230
Query: 458 NFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 503
NFEVPFAPSG KVRYLKVFEPKLNYSDHDVIKWVRYIGRSG+YETR
Sbjct: 231 NFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276
Score = 143 bits (362), Expect = 3e-39
Identities = 93/128 (72%), Positives = 104/128 (81%), Gaps = 10/128 (7%)
Query: 564 IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGIND 623
IGWRREGIKYRRNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+ND
Sbjct: 1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60
Query: 624 KIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPP 683
KIV+E +G D+ +SGK + IDDC FHQCV+LSKF++E SISFIPP
Sbjct: 61 KIVIEKQG----------KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPP 110
Query: 684 DGEFELMR 691
DGEFELMR
Sbjct: 111 DGEFELMR 118
>d2vglm2 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly
protein AP50) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 141
Score = 130 bits (329), Expect = 3e-36
Identities = 128/202 (63%), Positives = 134/202 (66%), Gaps = 61/202 (30%)
Query: 1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 60
MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFH+KR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 61 ANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEE 120
+NIWLAAVTKQNVNAAMVFEFL DVM +YFGKISEE
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFL---------------------YKMCDVMAAYFGKISEE 99
Query: 121 NIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILDFG 180
NIKNNFVLIYELLD EILDFG
Sbjct: 100 NIKNNFVLIYELLD----------------------------------------EILDFG 119
Query: 181 YPQNSDTGVLKTFILQQGVKSQ 202
YPQNS+TG LKTFI QQG+KSQ
Sbjct: 120 YPQNSETGALKTFITQQGIKSQ 141
Score = 38.7 bits (90), Expect = 4e-04
Identities = 24/28 (85%), Positives = 26/28 (92%)
Query: 521 EILDFGYPQNSDTGVLKTFILQQGVKSQ 548
EILDFGYPQNS+TG LKTFI QQG+KSQ
Sbjct: 114 EILDFGYPQNSETGALKTFITQQGIKSQ 141
>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly
protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 83.4 bits (206), Expect = 1e-19
Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 8/131 (6%)
Query: 1 MIGGLFVYNHKGEVLISRVYR--DDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 58
MI + + N G+ +++ Y DD + + V+ R + +
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 59 KRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFF-----IDVMQSY 113
+ A ++ N N E + F++V+ YF + E ++ NF+ +D M
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL- 119
Query: 114 FGKISEENIKN 124
G+I E +
Sbjct: 120 AGEIRETSQTK 130
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic
{Pseudoalteromonas carrageenovora [TaxId: 227]}
Length = 271
Score = 29.5 bits (65), Expect = 1.2
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 14/92 (15%)
Query: 459 FEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRKENTY---------- 508
+ P A G + N D KW G++ + EN
Sbjct: 2 MQPPIAKPGETWILQAKRSDEFNVKDAT--KWNFQTENYGVWSWKNENATVSKGKLKLTT 59
Query: 509 --KSFNPSSFPSPSEILDFGYPQNSDTGVLKT 538
+S + + ++ YP +GV K+
Sbjct: 60 KRESHQRTFWDGCNQQQVANYPLYYTSGVAKS 91
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermotoga maritima [TaxId: 2336]}
Length = 362
Score = 27.3 bits (60), Expect = 6.1
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 44 RSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKN 103
R V IART+F K + +V K NV + + + +V + Y +
Sbjct: 169 RKTVERIARTAFEIAKNRRKKVTSVDKANVLYSSMLWRKV-VNEVAREYPDVELTHIYVD 227
Query: 104 NFFIDVMQSY 113
N + ++
Sbjct: 228 NAAMQLILKP 237
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,516,434
Number of extensions: 119011
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 11
Length of query: 691
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 599
Effective length of database: 1,144,436
Effective search space: 685517164
Effective search space used: 685517164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)