BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2527
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92562|FIG4_HUMAN Polyphosphoinositide phosphatase OS=Homo sapiens GN=FIG4 PE=1
SV=1
Length = 907
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 41/52 (78%)
Query: 10 KYLIVGSNNAHTKFRVLKIDRTEPRDLILVDDKVVYTADEIKQSTAAVLLPN 61
+Y +VGSNNA TK+RVLKIDRTEP+DL+++DD+ VYT E+++ + L N
Sbjct: 23 RYFLVGSNNAETKYRVLKIDRTEPKDLVIIDDRHVYTQQEVRELLGRLDLGN 74
>sp|Q91WF7|FIG4_MOUSE Polyphosphoinositide phosphatase OS=Mus musculus GN=Fig4 PE=1
SV=1
Length = 907
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 41/52 (78%)
Query: 10 KYLIVGSNNAHTKFRVLKIDRTEPRDLILVDDKVVYTADEIKQSTAAVLLPN 61
+Y +VGSN+A TK+RVLKIDRTEP+DL+++DD+ VYT E+++ + L N
Sbjct: 23 RYFLVGSNHAETKYRVLKIDRTEPKDLVVIDDRHVYTQQEVRELLGRLDLGN 74
>sp|P42837|FIG4_YEAST Polyphosphoinositide phosphatase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=FIG4 PE=1 SV=1
Length = 879
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 13 IVGSNNAHTKFRVLKIDRTEPR-DLILVDDKVVYTADEIKQSTAAV 57
IVGSN T FR+L+ID T PR +L +++D V +T +EI A++
Sbjct: 44 IVGSNKRETMFRILEIDLTVPRGELTVLEDNVFFTRNEIMNVLASL 89
>sp|A5N219|SPEE_CLOK5 Spermidine synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM
555 / NCIMB 10680) GN=speE PE=3 SV=1
Length = 275
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 8 PQKYLIVGSNNAHTKFRVLKIDRTEPRDLILVDDKVVY 45
PQK LIVG + T VLK + E L +D++VVY
Sbjct: 76 PQKVLIVGGGDGGTVREVLKHETVEKVVLCEIDEQVVY 113
>sp|B9E5S1|SPEE_CLOK1 Spermidine synthase OS=Clostridium kluyveri (strain NBRC 12016)
GN=speE PE=3 SV=1
Length = 275
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 8 PQKYLIVGSNNAHTKFRVLKIDRTEPRDLILVDDKVVY 45
PQK LIVG + T VLK + E L +D++VVY
Sbjct: 76 PQKVLIVGGGDGGTVREVLKHETVEKVVLCEIDEQVVY 113
>sp|Q6KI26|SSRP_MYCMO SsrA-binding protein OS=Mycoplasma mobile (strain ATCC 43663 / 163K
/ NCTC 11711) GN=smpB PE=3 SV=1
Length = 142
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 18 NAH-TKFRVLKIDRTEPRDLILVDDKVVYTADEIKQSTAAVLLPNLFW 64
N H +++ +K + EPR L+L ++ + D+ +++ AV+ NLFW
Sbjct: 57 NMHISQYMSVKGNELEPRKLLLNKHEIRHIQDKKNRNSLAVIPLNLFW 104
>sp|Q9ZM69|COPA_HELPJ Copper-transporting ATPase OS=Helicobacter pylori (strain J99)
GN=copA PE=3 SV=1
Length = 745
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 40 DDKVVYTADEIKQSTAAVLLPNLFWAF 66
D K VY+A ++ Q+T + NLFWAF
Sbjct: 667 DIKSVYSAIKLSQATIKNIKENLFWAF 693
>sp|P77871|COPA1_HELPX Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=2
Length = 745
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 40 DDKVVYTADEIKQSTAAVLLPNLFWAF 66
D K VY+A ++ Q+T + NLFWAF
Sbjct: 667 DIKSVYSAIKLSQATIKNIKENLFWAF 693
>sp|P55989|COPA_HELPY Copper-transporting ATPase OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=copA PE=3 SV=1
Length = 745
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 40 DDKVVYTADEIKQSTAAVLLPNLFWAF 66
D K VY+A ++ Q+T + NLFWAF
Sbjct: 667 DIKSVYSAIKLSQATIKNIKENLFWAF 693
>sp|O08462|COPA3_HELPX Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1
Length = 745
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 40 DDKVVYTADEIKQSTAAVLLPNLFWAF 66
D K VY+A ++ Q+T + NLFWAF
Sbjct: 667 DIKSVYSAIKLSQATIKNIKENLFWAF 693
>sp|Q59467|COPA2_HELPX Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1
Length = 741
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 40 DDKVVYTADEIKQSTAAVLLPNLFWAF 66
D K VY+A ++ Q+T + NLFWAF
Sbjct: 663 DIKSVYSAIKLSQATIKNIKENLFWAF 689
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,969,321
Number of Sequences: 539616
Number of extensions: 869986
Number of successful extensions: 2187
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2171
Number of HSP's gapped (non-prelim): 17
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)