Query psy2527
Match_columns 83
No_of_seqs 102 out of 157
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 18:29:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1888|consensus 99.9 3.3E-25 7.2E-30 188.5 7.1 70 4-73 20-97 (868)
2 PF13280 WYL: WYL domain 88.4 0.23 5E-06 32.5 1.1 46 7-54 40-85 (172)
3 COG5329 Phosphoinositide polyp 77.0 2.6 5.7E-05 36.2 3.1 62 5-72 6-67 (570)
4 PF09860 DUF2087: Uncharacteri 70.3 4.6 9.9E-05 25.5 2.3 21 39-59 24-44 (71)
5 PF14258 DUF4350: Domain of un 64.6 11 0.00023 22.4 3.1 31 32-62 34-65 (70)
6 PTZ00288 glucokinase 1; Provis 61.2 11 0.00024 30.5 3.5 68 10-77 25-107 (405)
7 COG3860 Uncharacterized protei 58.2 7.6 0.00017 26.1 1.7 24 37-60 39-62 (89)
8 PF08137 DVL: DVL family; Int 47.7 9.2 0.0002 19.1 0.7 10 6-15 2-11 (19)
9 PF10017 Methyltransf_33: Hist 47.4 55 0.0012 22.0 4.7 59 8-75 58-119 (127)
10 PRK06531 yajC preprotein trans 36.5 43 0.00092 23.0 2.8 27 47-73 27-54 (113)
11 PF00900 Ribosomal_S4e: Riboso 36.1 51 0.0011 20.9 2.9 29 3-31 8-36 (77)
12 PF09200 Monellin: Monellin; 36.0 20 0.00044 21.2 0.9 16 56-71 22-37 (43)
13 PF13433 Peripla_BP_5: Peripla 33.2 28 0.00061 28.2 1.7 50 9-58 135-186 (363)
14 PF02562 PhoH: PhoH-like prote 32.9 31 0.00068 25.5 1.8 34 30-63 116-149 (205)
15 KOG3947|consensus 30.7 45 0.00098 26.8 2.4 28 47-75 237-264 (305)
16 COG2378 Predicted transcriptio 30.7 49 0.0011 25.6 2.6 26 8-33 180-205 (311)
17 TIGR02687 conserved hypothetic 30.4 22 0.00048 31.6 0.7 13 69-81 704-716 (844)
18 smart00712 PUR DNA/RNA-binding 28.8 59 0.0013 20.0 2.3 19 9-27 12-31 (63)
19 PF12900 Pyridox_ox_2: Pyridox 28.0 90 0.0019 20.6 3.2 25 46-77 1-25 (143)
20 PRK05886 yajC preprotein trans 27.6 79 0.0017 21.6 2.9 27 47-73 29-56 (109)
21 PRK14364 Maf-like protein; Pro 27.5 59 0.0013 23.5 2.4 27 44-70 122-148 (181)
22 cd00713 GltS Glutamine amidotr 27.4 1.4E+02 0.0031 24.6 4.8 51 6-56 356-411 (413)
23 COG0539 RpsA Ribosomal protein 26.8 93 0.002 26.7 3.8 40 20-62 152-195 (541)
24 TIGR01458 HAD-SF-IIA-hyp3 HAD- 26.6 1.2E+02 0.0025 22.4 3.9 51 9-61 86-136 (257)
25 COG0516 GuaB IMP dehydrogenase 25.1 37 0.00079 23.8 0.9 11 67-78 72-82 (170)
26 KOG4013|consensus 24.7 37 0.0008 26.5 0.9 31 43-76 73-103 (255)
27 PRK00234 Maf-like protein; Rev 24.6 53 0.0012 23.9 1.8 27 44-70 129-155 (192)
28 PF09935 DUF2167: Protein of u 24.6 37 0.0008 26.2 0.9 78 2-79 115-213 (239)
29 cd05120 APH_ChoK_like Aminogly 24.4 1.1E+02 0.0024 18.3 2.9 26 48-79 93-118 (155)
30 TIGR00739 yajC preprotein tran 23.9 98 0.0021 19.8 2.7 26 47-72 28-54 (84)
31 COG1531 Uncharacterized protei 23.7 98 0.0021 20.2 2.7 24 7-30 43-66 (77)
32 PRK00148 Maf-like protein; Rev 23.1 66 0.0014 23.5 2.0 27 44-70 128-154 (194)
33 PRK01441 Maf-like protein; Rev 23.0 68 0.0015 23.6 2.1 27 44-70 138-164 (207)
34 PRK00032 Maf-like protein; Rev 22.4 61 0.0013 23.6 1.7 27 44-70 128-154 (190)
35 PRK14367 Maf-like protein; Pro 21.3 62 0.0013 23.8 1.5 28 44-71 134-161 (202)
36 PRK10536 hypothetical protein; 20.9 1.4E+02 0.0029 23.3 3.4 34 29-62 172-205 (262)
37 TIGR00172 maf MAF protein. Thi 20.8 71 0.0015 23.1 1.7 27 44-70 128-154 (183)
38 PRK14361 Maf-like protein; Pro 20.3 74 0.0016 23.1 1.8 27 44-70 123-149 (187)
39 PRK00078 Maf-like protein; Rev 20.2 60 0.0013 23.6 1.3 27 44-70 131-157 (192)
40 COG1862 YajC Preprotein transl 20.1 1.3E+02 0.0027 20.2 2.7 28 47-74 34-65 (97)
41 PF09875 DUF2102: Uncharacteri 20.0 1.8E+02 0.0039 20.1 3.5 37 37-75 2-40 (104)
42 TIGR03406 FeS_long_SufT probab 20.0 1.7E+02 0.0037 21.2 3.6 40 24-63 43-91 (174)
No 1
>KOG1888|consensus
Probab=99.91 E-value=3.3e-25 Score=188.46 Aligned_cols=70 Identities=40% Similarity=0.586 Sum_probs=67.1
Q ss_pred cccCcceEEEEEecCCCceeEEEEeecCCCCCeeEecCCcccCHHHHHHHHHHhcCCCcc--------ccceeeEEee
Q psy2527 4 SCFPPQKYLIVGSNNAHTKFRVLKIDRTEPRDLILVDDKVVYTADEIKQSTAAVLLPNLF--------WAFKIATSVH 73 (83)
Q Consensus 4 ~YET~srfYiVGsn~~et~fRvLKIDRt~p~~L~I~ED~~~YT~~Ei~~LL~~I~egNk~--------t~fGi~g~v~ 73 (83)
.|||++||||||||+++++||||||||++|.+|+|.||+++||++||.+||++|++||++ +||||+|||.
T Consensus 20 lyETrar~YlIGsn~s~t~yrVLkIDrt~p~~Lni~ed~~~yt~~Ei~elL~~i~~g~~~tgGl~~~t~ayGIlGfvk 97 (868)
T KOG1888|consen 20 LYETRARFYLIGSNNSETRYRVLKIDRTEPSELNISEDSVVYTSEEIRELLARISEGNRATGGLKKVTSAYGILGFVK 97 (868)
T ss_pred EEEecceEEEEeecCCCceEEEEEeccCCchhhccCCCccccCHHHHHHHHHHHhcCCccCCceeeeeeeeeeeeEEE
Confidence 599999999999999999999999999999999999999999999999999999999974 4599999996
No 2
>PF13280 WYL: WYL domain
Probab=88.43 E-value=0.23 Score=32.48 Aligned_cols=46 Identities=11% Similarity=0.332 Sum_probs=32.9
Q ss_pred CcceEEEEEecCCCceeEEEEeecCCCCCeeEecCCcccCHHHHHHHH
Q psy2527 7 PPQKYLIVGSNNAHTKFRVLKIDRTEPRDLILVDDKVVYTADEIKQST 54 (83)
Q Consensus 7 T~srfYiVGsn~~et~fRvLKIDRt~p~~L~I~ED~~~YT~~Ei~~LL 54 (83)
...++|++|.+.....+|.++|||-.. +.+.+++......++.+.+
T Consensus 40 ~~~~~Yl~~~~~~~~~~r~frldrI~~--i~~~~~~~~~~~~~~~~~~ 85 (172)
T PF13280_consen 40 YNGRWYLIAYDREREEFRTFRLDRIRS--IEILDEPFEPPDFDLEDYL 85 (172)
T ss_pred ECCEEEEEEEeccccccccccccceEE--EEEcccccccccccchhhe
Confidence 456899999998999999999999755 5666665444444444443
No 3
>COG5329 Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
Probab=76.96 E-value=2.6 Score=36.17 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=51.3
Q ss_pred ccCcceEEEEEecCCCceeEEEEeecCCCCCeeEecCCcccCHHHHHHHHHHhcCCCccccceeeEEe
Q psy2527 5 CFPPQKYLIVGSNNAHTKFRVLKIDRTEPRDLILVDDKVVYTADEIKQSTAAVLLPNLFWAFKIATSV 72 (83)
Q Consensus 5 YET~srfYiVGsn~~et~fRvLKIDRt~p~~L~I~ED~~~YT~~Ei~~LL~~I~egNk~t~fGi~g~v 72 (83)
+|++ |.++++||+....||.+ --.++++.+..++..+.+.+-.+-+..+.++. ..+|++|++
T Consensus 6 ~~~~-r~i~~~sn~~~~~fr~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~g~~Gli 67 (570)
T COG5329 6 GEKP-RSIAIVSNNYALSFRRL---GVKNSERILCATELVGVRFEPDEGFSSLSSAH--KIYGVIGLI 67 (570)
T ss_pred ccCc-eeEEEEeccceEEEEec---CCCccceEEEeeccceeecccCccchhhccce--eEEeEEEEE
Confidence 5777 99999999999999999 23667899999999999999999998887753 346666665
No 4
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=70.28 E-value=4.6 Score=25.50 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=18.4
Q ss_pred ecCCcccCHHHHHHHHHHhcC
Q psy2527 39 VDDKVVYTADEIKQSTAAVLL 59 (83)
Q Consensus 39 ~ED~~~YT~~Ei~~LL~~I~e 59 (83)
.|....||++|++++|+.+.+
T Consensus 24 f~~g~~y~E~EVN~~L~~~~~ 44 (71)
T PF09860_consen 24 FEPGREYSEKEVNEILKRFFD 44 (71)
T ss_pred CCCCCccCHHHHHHHHHHHcc
Confidence 477889999999999999854
No 5
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=64.61 E-value=11 Score=22.35 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=26.4
Q ss_pred CCCCeeEecCCcccCH-HHHHHHHHHhcCCCc
Q psy2527 32 EPRDLILVDDKVVYTA-DEIKQSTAAVLLPNL 62 (83)
Q Consensus 32 ~p~~L~I~ED~~~YT~-~Ei~~LL~~I~egNk 62 (83)
.+..|.++.+...++. .|+.+|++-++.||+
T Consensus 34 ~~~tll~i~~~~~~~~~~~~~~l~~~v~~G~~ 65 (70)
T PF14258_consen 34 DDGTLLVIGPDLRLSEPEEAEALLEWVEAGNT 65 (70)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHHHHcCCE
Confidence 4557778888878996 999999999999986
No 6
>PTZ00288 glucokinase 1; Provisional
Probab=61.24 E-value=11 Score=30.52 Aligned_cols=68 Identities=13% Similarity=-0.003 Sum_probs=43.1
Q ss_pred eEEEEEecCCCceeEEEEeecC-CCCCeeEecCCccc-CHHHHHH-------HHHHhcCCC------ccccceeeEEeec
Q psy2527 10 KYLIVGSNNAHTKFRVLKIDRT-EPRDLILVDDKVVY-TADEIKQ-------STAAVLLPN------LFWAFKIATSVHD 74 (83)
Q Consensus 10 rfYiVGsn~~et~fRvLKIDRt-~p~~L~I~ED~~~Y-T~~Ei~~-------LL~~I~egN------k~t~fGi~g~v~~ 74 (83)
--|++|+|-..|.=|+-=.+-. .+..+...++--.. |.+.+++ +|.+|..+. ...+|+++|=|.|
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~iAvAGPV~~ 104 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNVTKTDIRELLEFFDEVLQKLKKNLSFIQRVAAGAISVPGPVTG 104 (405)
T ss_pred CCeEEEEEecCCceEEEEEeccCCCCCceeEEEEecccccccHHHHHHHHHHHHHHHHhcCccccCcCeEEEEEeCceeC
Confidence 4589999988877666655553 34456666665555 5654444 445555432 2356999999987
Q ss_pred cee
Q psy2527 75 KVS 77 (83)
Q Consensus 75 ~~~ 77 (83)
+.-
T Consensus 105 ~~~ 107 (405)
T PTZ00288 105 GQL 107 (405)
T ss_pred CEe
Confidence 753
No 7
>COG3860 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.22 E-value=7.6 Score=26.14 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=21.2
Q ss_pred eEecCCcccCHHHHHHHHHHhcCC
Q psy2527 37 ILVDDKVVYTADEIKQSTAAVLLP 60 (83)
Q Consensus 37 ~I~ED~~~YT~~Ei~~LL~~I~eg 60 (83)
.-+|....||++|+..+|+..++.
T Consensus 39 ~~fe~~r~YsEkeVN~ii~ryh~D 62 (89)
T COG3860 39 KNFENERQYSEKEVNLIIKRYHPD 62 (89)
T ss_pred hhcccccccCHHHHHHHHHHhCch
Confidence 347999999999999999999865
No 8
>PF08137 DVL: DVL family; InterPro: IPR012552 This family consists of the DVL family of proteins. In a gain-of-function genetic screen for genes that influence fruit development in Arabidopsis, DEVIL (DVL) gene was identified. DVL is a small protein and over expression of the protein results in pleiotropic phenotypes featured by shortened stature, rounder rosette leaves, clustered inflorescences, shortened pedicles, and siliques with pronged tips. DVL family is a novel class of small polypeptides and the over expression phenotypes suggest that these polypeptides may have a role in plant development [].
Probab=47.74 E-value=9.2 Score=19.12 Aligned_cols=10 Identities=10% Similarity=0.122 Sum_probs=7.7
Q ss_pred cCcceEEEEE
Q psy2527 6 FPPQKYLIVG 15 (83)
Q Consensus 6 ET~srfYiVG 15 (83)
|-++||||+.
T Consensus 2 eqr~r~YIir 11 (19)
T PF08137_consen 2 EQRARLYIIR 11 (19)
T ss_pred CcceEEEeHH
Confidence 5678999874
No 9
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=47.45 E-value=55 Score=21.97 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=43.1
Q ss_pred cceEEEEEecCCCceeEEEEeecC---CCCCeeEecCCcccCHHHHHHHHHHhcCCCccccceeeEEeecc
Q psy2527 8 PQKYLIVGSNNAHTKFRVLKIDRT---EPRDLILVDDKVVYTADEIKQSTAAVLLPNLFWAFKIATSVHDK 75 (83)
Q Consensus 8 ~srfYiVGsn~~et~fRvLKIDRt---~p~~L~I~ED~~~YT~~Ei~~LL~~I~egNk~t~fGi~g~v~~~ 75 (83)
+-.+|++.. .+...+|-+.+++ .+++..-+|.+.-||..++..|+.. .||.+.....+.
T Consensus 58 r~e~~l~~~--~~~~v~i~~~~~~i~~~~GE~I~~e~S~Ky~~~~~~~l~~~-------aGl~~~~~w~d~ 119 (127)
T PF10017_consen 58 RHEMYLVAK--RDQTVRIGGLDLTIHFKEGERIHTENSYKYSPEEFEALAEQ-------AGLEVEKRWTDP 119 (127)
T ss_pred EEEEEEEeC--CcEEEEEcCCCceeEECCCCEEEEEEeeCcCHHHHHHHHHH-------CCCeeEEEEECC
Confidence 446777765 4566666666663 7788999999999999999999975 346665555544
No 10
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=36.48 E-value=43 Score=23.02 Aligned_cols=27 Identities=15% Similarity=-0.007 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCCcc-ccceeeEEee
Q psy2527 47 ADEIKQSTAAVLLPNLF-WAFKIATSVH 73 (83)
Q Consensus 47 ~~Ei~~LL~~I~egNk~-t~fGi~g~v~ 73 (83)
+++.+++++.|.-|.+. |..||.|-|.
T Consensus 27 ~Ke~~em~~sLk~GD~VvT~GGi~G~V~ 54 (113)
T PRK06531 27 AQERQNQLNAIQKGDEVVTIGGLYGTVD 54 (113)
T ss_pred HHHHHHHHHhcCCCCEEEECCCcEEEEE
Confidence 56889999999999876 6777777763
No 11
>PF00900 Ribosomal_S4e: Ribosomal family S4e; InterPro: IPR013845 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes yeast S7 (YS6); archaeal S4e; and mammalian and plant cytoplasmic S4 []. Two highly similar isoforms of mammalian S4 exist, one coded by a gene on chromosome Y, and the other on chromosome X. These proteins have 233 to 264 amino acids. This entry represents the central region of these proteins.; PDB: 2XZM_W 2XZN_W 3IZ6_D 3KBG_A 3U5G_E 3U5C_E 3IZB_D.
Probab=36.13 E-value=51 Score=20.95 Aligned_cols=29 Identities=7% Similarity=0.254 Sum_probs=22.6
Q ss_pred CcccCcceEEEEEecCCCceeEEEEeecC
Q psy2527 3 ISCFPPQKYLIVGSNNAHTKFRVLKIDRT 31 (83)
Q Consensus 3 ~~YET~srfYiVGsn~~et~fRvLKIDRt 31 (83)
+-|.++.||.++=-+..|..|++.||..-
T Consensus 8 vl~d~kgr~~l~~I~~eea~~KLckV~~k 36 (77)
T PF00900_consen 8 VLYDTKGRFVLHPISEEEAKYKLCKVRNK 36 (77)
T ss_dssp EEE-TTS-EEEEEE-TTGGGEEEEEEEEE
T ss_pred EEECCCCcEEEEECCHHHccCeEEEEeEE
Confidence 35788999999999999999999999763
No 12
>PF09200 Monellin: Monellin; InterPro: IPR015283 Monellin, a protein produced by the West African plant Dioscoreophyllum cumminsii (Serendipity berry), is approximately 70,000 times sweeter than sucrose on a molar basis. The protein adopts an alpha-beta structure, with a cystatin-like fold, where each helix packs against a coiled antiparallel beta-sheet []. ; PDB: 3PXM_A 1IV7_A 3PYJ_A 1KRL_D 4MON_B 2O9U_X 3Q2P_C 3MON_F 1MOL_B 1IV9_A ....
Probab=36.03 E-value=20 Score=21.16 Aligned_cols=16 Identities=6% Similarity=-0.226 Sum_probs=13.8
Q ss_pred HhcCCCccccceeeEE
Q psy2527 56 AVLLPNLFWAFKIATS 71 (83)
Q Consensus 56 ~I~egNk~t~fGi~g~ 71 (83)
.|+|.||..++|.+.|
T Consensus 22 ~i~Ed~K~~~~~~L~F 37 (43)
T PF09200_consen 22 DISEDYKTRGRKLLRF 37 (43)
T ss_dssp CCCCCCCCTCCCCECE
T ss_pred eccccccccceeEEEc
Confidence 4688899999999987
No 13
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=33.20 E-value=28 Score=28.22 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=23.2
Q ss_pred ceEEEEEecCC--CceeEEEEeecCCCCCeeEecCCcccCHHHHHHHHHHhc
Q psy2527 9 QKYLIVGSNNA--HTKFRVLKIDRTEPRDLILVDDKVVYTADEIKQSTAAVL 58 (83)
Q Consensus 9 srfYiVGsn~~--et~fRvLKIDRt~p~~L~I~ED~~~YT~~Ei~~LL~~I~ 58 (83)
.|||+||||.- .+.-||+|-=-..-+-=.+.|.=.-.-..|...+++.|.
T Consensus 135 ~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I~ 186 (363)
T PF13433_consen 135 KRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAEIK 186 (363)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHHH
T ss_pred ceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHH
Confidence 79999999852 111233321111111122334444455566666666654
No 14
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=32.92 E-value=31 Score=25.52 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=22.6
Q ss_pred cCCCCCeeEecCCcccCHHHHHHHHHHhcCCCcc
Q psy2527 30 RTEPRDLILVDDKVVYTADEIKQSTAAVLLPNLF 63 (83)
Q Consensus 30 Rt~p~~L~I~ED~~~YT~~Ei~~LL~~I~egNk~ 63 (83)
||=.+...|+|.....|..|+..+|.++.++.|.
T Consensus 116 rt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~ski 149 (205)
T PF02562_consen 116 RTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKI 149 (205)
T ss_dssp --B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EE
T ss_pred ccccceEEEEecccCCCHHHHHHHHcccCCCcEE
Confidence 4434578899999999999999999999988654
No 15
>KOG3947|consensus
Probab=30.69 E-value=45 Score=26.84 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCCccccceeeEEeecc
Q psy2527 47 ADEIKQSTAAVLLPNLFWAFKIATSVHDK 75 (83)
Q Consensus 47 ~~Ei~~LL~~I~egNk~t~fGi~g~v~~~ 75 (83)
+.-|.+||++++-+- .+.|.++|+||.+
T Consensus 237 r~GC~ell~tVe~rv-qpk~hVfGhvhe~ 264 (305)
T KOG3947|consen 237 RNGCVELLNTVERRV-QPKYHVFGHVHEG 264 (305)
T ss_pred ccCHHHHHHhHhhcc-ccceEEeeeeecC
Confidence 456899999999765 5679999999975
No 16
>COG2378 Predicted transcriptional regulator [Transcription]
Probab=30.67 E-value=49 Score=25.60 Aligned_cols=26 Identities=19% Similarity=0.384 Sum_probs=23.0
Q ss_pred cceEEEEEecCCCceeEEEEeecCCC
Q psy2527 8 PQKYLIVGSNNAHTKFRVLKIDRTEP 33 (83)
Q Consensus 8 ~srfYiVGsn~~et~fRvLKIDRt~p 33 (83)
..+-|+||.+-....||..++||-..
T Consensus 180 ~~~wylva~c~~r~~~R~FrldRI~~ 205 (311)
T COG2378 180 GGHWYLVAWCELRQDFRTFRLDRIVD 205 (311)
T ss_pred CCEEEEEeeecccCceeEEehhhccc
Confidence 46789999999999999999999744
No 17
>TIGR02687 conserved hypothetical protein TIGR02687. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.
Probab=30.36 E-value=22 Score=31.57 Aligned_cols=13 Identities=31% Similarity=0.233 Sum_probs=11.2
Q ss_pred eEEeecceeeeee
Q psy2527 69 ATSVHDKVSLKLM 81 (83)
Q Consensus 69 ~g~v~~~~~~~~~ 81 (83)
++||||+.||.-|
T Consensus 704 ~~fVHGGaSlQEi 716 (844)
T TIGR02687 704 ARFVHGGASPQEI 716 (844)
T ss_pred CceecCCCCceee
Confidence 6899999999765
No 18
>smart00712 PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
Probab=28.76 E-value=59 Score=20.01 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=12.0
Q ss_pred ceEEE-EEecCCCceeEEEE
Q psy2527 9 QKYLI-VGSNNAHTKFRVLK 27 (83)
Q Consensus 9 srfYi-VGsn~~et~fRvLK 27 (83)
-+||+ ||.|.++.--||-+
T Consensus 12 k~fyfDvk~N~rG~fLrIsE 31 (63)
T smart00712 12 KRFYFDVKENRRGRFLRISE 31 (63)
T ss_pred cEEEEEecccCCccEEEEEE
Confidence 45666 99999883333333
No 19
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=28.03 E-value=90 Score=20.63 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHhcCCCccccceeeEEeeccee
Q psy2527 46 TADEIKQSTAAVLLPNLFWAFKIATSVHDKVS 77 (83)
Q Consensus 46 T~~Ei~~LL~~I~egNk~t~fGi~g~v~~~~~ 77 (83)
++.|+.++|+.-. +|.++++.++-.
T Consensus 1 d~~e~~~iL~~~~-------~g~la~~~~~~P 25 (143)
T PF12900_consen 1 DREEIWEILDRAP-------VGRLAFVDDGYP 25 (143)
T ss_dssp -HHHHHHHHHH-S-------EEEEEEEETTEE
T ss_pred CHHHHHHHHhhCC-------EEEEEEEeCCEE
Confidence 4688999998644 889999887654
No 20
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=27.59 E-value=79 Score=21.60 Aligned_cols=27 Identities=0% Similarity=-0.090 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCCcc-ccceeeEEee
Q psy2527 47 ADEIKQSTAAVLLPNLF-WAFKIATSVH 73 (83)
Q Consensus 47 ~~Ei~~LL~~I~egNk~-t~fGi~g~v~ 73 (83)
+++.+++++.|.-|.+. |.-|+.|-|.
T Consensus 29 ~K~~~~m~~~Lk~GD~VvT~gGi~G~V~ 56 (109)
T PRK05886 29 MQATIDLHESLQPGDRVHTTSGLQATIV 56 (109)
T ss_pred HHHHHHHHHhcCCCCEEEECCCeEEEEE
Confidence 56788999999999865 6666666654
No 21
>PRK14364 Maf-like protein; Provisional
Probab=27.52 E-value=59 Score=23.48 Aligned_cols=27 Identities=15% Similarity=-0.004 Sum_probs=22.8
Q ss_pred ccCHHHHHHHHHHhcCCCccccceeeE
Q psy2527 44 VYTADEIKQSTAAVLLPNLFWAFKIAT 70 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egNk~t~fGi~g 70 (83)
.+|..||..-++.-+--.+.+||||.|
T Consensus 122 ~ls~~~I~~Yv~~~e~~dkAG~y~Iqg 148 (181)
T PRK14364 122 SLTTQDMEDYWATGEPVGKAGAYAIQG 148 (181)
T ss_pred CCCHHHHHHHHhcCCCcCcccCEEeec
Confidence 578999999998855447999999998
No 22
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=27.42 E-value=1.4e+02 Score=24.61 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=35.5
Q ss_pred cCcceEEEEEecCCCcee---EEEEeecCCCCCeeEecCC--cccCHHHHHHHHHH
Q psy2527 6 FPPQKYLIVGSNNAHTKF---RVLKIDRTEPRDLILVDDK--VVYTADEIKQSTAA 56 (83)
Q Consensus 6 ET~srfYiVGsn~~et~f---RvLKIDRt~p~~L~I~ED~--~~YT~~Ei~~LL~~ 56 (83)
+|+..+|+++|-..--.. .|.+..|..|+++.+++.. .+|.-.|+++-+..
T Consensus 356 ~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe~v~id~~~g~i~~~~eik~~~a~ 411 (413)
T cd00713 356 ITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEMLLVDLEEGRILDDEEIKDQLAK 411 (413)
T ss_pred EECCCEEEEEeCCcccCCCcceeeecCCCCCCeEEEEECCCCEEEccHHHHHHHHh
Confidence 577778999996533222 3444457799999987544 48999999887754
No 23
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=26.77 E-value=93 Score=26.71 Aligned_cols=40 Identities=10% Similarity=0.236 Sum_probs=26.5
Q ss_pred CceeEEEEeecCCCCCeeEecCCcccCH----HHHHHHHHHhcCCCc
Q psy2527 20 HTKFRVLKIDRTEPRDLILVDDKVVYTA----DEIKQSTAAVLLPNL 62 (83)
Q Consensus 20 et~fRvLKIDRt~p~~L~I~ED~~~YT~----~Ei~~LL~~I~egNk 62 (83)
+-.|+|+|+|+... +|+-....+.+ ++-.++++.|+.|.-
T Consensus 152 ~~~~kiie~d~~~n---~vv~SrR~~~e~~~~~~r~e~~~~l~~G~v 195 (541)
T COG0539 152 ELEFKILELDKKRN---NVVLSRRAVLEEERSEQREELLNKLEVGEV 195 (541)
T ss_pred eEEEEEEEEccccC---cEEEEhHHHhhHHHHHHHHHHHhcCCCCce
Confidence 45799999999866 33333333444 344477999999963
No 24
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=26.58 E-value=1.2e+02 Score=22.37 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=32.7
Q ss_pred ceEEEEEecCCCceeEEEEeecCCCCCeeEecCCcccCHHHHHHHHHHhcCCC
Q psy2527 9 QKYLIVGSNNAHTKFRVLKIDRTEPRDLILVDDKVVYTADEIKQSTAAVLLPN 61 (83)
Q Consensus 9 srfYiVGsn~~et~fRvLKIDRt~p~~L~I~ED~~~YT~~Ei~~LL~~I~egN 61 (83)
.+.|++|++.....|+ .++-.+|.-+.+..|+..++-..+.+.++.|..+.
T Consensus 86 ~~~~~~g~~~~~~~~~--~~~~~~~~~Vv~g~~~~~~~y~~l~~a~~~L~~~~ 136 (257)
T TIGR01458 86 LRPMLLVDDRVLPDFD--GIDTSDPNCVVMGLAPEHFSYQILNQAFRLLLDGA 136 (257)
T ss_pred CCeEEEECccHHHHhc--cCCCCCCCEEEEecccCccCHHHHHHHHHHHHcCC
Confidence 4679999876555565 34444554345555554566677888888887653
No 25
>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=25.14 E-value=37 Score=23.80 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=8.8
Q ss_pred eeeEEeecceee
Q psy2527 67 KIATSVHDKVSL 78 (83)
Q Consensus 67 Gi~g~v~~~~~~ 78 (83)
|| ||+|||.+.
T Consensus 72 GI-GVih~nm~~ 82 (170)
T COG0516 72 GI-GVMHGNMLA 82 (170)
T ss_pred Ce-EEEeccccH
Confidence 55 999999874
No 26
>KOG4013|consensus
Probab=24.65 E-value=37 Score=26.50 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=23.8
Q ss_pred cccCHHHHHHHHHHhcCCCccccceeeEEeecce
Q psy2527 43 VVYTADEIKQSTAAVLLPNLFWAFKIATSVHDKV 76 (83)
Q Consensus 43 ~~YT~~Ei~~LL~~I~egNk~t~fGi~g~v~~~~ 76 (83)
-+|+..||..++.-++--.+ +|.-|||-|..
T Consensus 73 FvYsd~Em~a~~~Dv~llk~---~GAdGfVFGaL 103 (255)
T KOG4013|consen 73 FVYSDDEMAANMEDVELLKK---AGADGFVFGAL 103 (255)
T ss_pred cccchHHHHHHHHHHHHHHH---cCCCceEEeec
Confidence 48999999999988876555 66677777653
No 27
>PRK00234 Maf-like protein; Reviewed
Probab=24.64 E-value=53 Score=23.87 Aligned_cols=27 Identities=15% Similarity=-0.007 Sum_probs=22.6
Q ss_pred ccCHHHHHHHHHHhcCCCccccceeeE
Q psy2527 44 VYTADEIKQSTAAVLLPNLFWAFKIAT 70 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egNk~t~fGi~g 70 (83)
.++..+|...|+.-+--.+.+||||.|
T Consensus 129 ~l~~~~I~~Yl~~ge~~dkAG~y~Iqg 155 (192)
T PRK00234 129 ELDRARIERYLEAEQPLDCAGSFKAEG 155 (192)
T ss_pred CCCHHHHHHHHhcCCcccceeEEeecc
Confidence 467899999998855557999999998
No 28
>PF09935 DUF2167: Protein of unknown function (DUF2167); InterPro: IPR018682 This family of various hypothetical membrane-anchored prokaryotic proteins has no known function.
Probab=24.61 E-value=37 Score=26.17 Aligned_cols=78 Identities=17% Similarity=0.061 Sum_probs=50.7
Q ss_pred CCcccCcceEEEEEec-------CCCceeEEEEeecCCCCCeeEecCCc--ccCHHHHHHHHHHhc--CCC---------
Q psy2527 2 DISCFPPQKYLIVGSN-------NAHTKFRVLKIDRTEPRDLILVDDKV--VYTADEIKQSTAAVL--LPN--------- 61 (83)
Q Consensus 2 ~~~YET~srfYiVGsn-------~~et~fRvLKIDRt~p~~L~I~ED~~--~YT~~Ei~~LL~~I~--egN--------- 61 (83)
+|+|.+.++--.-+-. ..--.|.+.-..|..--.|+++-|+. .-.+.++.+||..++ +|+
T Consensus 115 ~P~YD~~t~~L~Wa~~~~~~~~~~~~vNYn~r~LGR~G~~~l~lV~~~~~l~~~k~~~~~lL~~~~f~~G~rYaDfn~~~ 194 (239)
T PF09935_consen 115 PPHYDAATHRLYWAKELKFGGDPENTVNYNTRVLGREGVLSLNLVADPDQLPAVKPEAQALLSAVEFNEGKRYADFNPST 194 (239)
T ss_pred CCccCccccEEEEEEeeecCCCCCceEEEEEEEeecceEEEEEEecCHHHHHHHHHHHHHHHhhccCCCCCcccccCCCc
Confidence 6788777554333221 22234666666777555677766655 566789999999987 454
Q ss_pred -ccccceeeEEeecceeee
Q psy2527 62 -LFWAFKIATSVHDKVSLK 79 (83)
Q Consensus 62 -k~t~fGi~g~v~~~~~~~ 79 (83)
|..+||+++.|=|++--|
T Consensus 195 DKvAeyGLaaLVaG~~A~K 213 (239)
T PF09935_consen 195 DKVAEYGLAALVAGGVAKK 213 (239)
T ss_pred chhhhhhHHHHHhhhHHHH
Confidence 345589999988875443
No 29
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=24.44 E-value=1.1e+02 Score=18.27 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCCccccceeeEEeecceeee
Q psy2527 48 DEIKQSTAAVLLPNLFWAFKIATSVHDKVSLK 79 (83)
Q Consensus 48 ~Ei~~LL~~I~egNk~t~fGi~g~v~~~~~~~ 79 (83)
.++.+.|..++.-.. .|++||+....
T Consensus 93 ~~~~~~l~~lh~~~~------~~i~H~Dl~~~ 118 (155)
T cd05120 93 EQLAELLAKLHQLPL------LVLCHGDLHPG 118 (155)
T ss_pred HHHHHHHHHHhCCCc------eEEEecCCCcc
Confidence 445555666665433 68999876543
No 30
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=23.91 E-value=98 Score=19.81 Aligned_cols=26 Identities=12% Similarity=-0.082 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCCcc-ccceeeEEe
Q psy2527 47 ADEIKQSTAAVLLPNLF-WAFKIATSV 72 (83)
Q Consensus 47 ~~Ei~~LL~~I~egNk~-t~fGi~g~v 72 (83)
+++.+++++.|..|.+. +.-|+.|-|
T Consensus 28 ~k~~~~m~~~L~~Gd~VvT~gGi~G~V 54 (84)
T TIGR00739 28 RKAHKKLIESLKKGDKVLTIGGIIGTV 54 (84)
T ss_pred HHHHHHHHHhCCCCCEEEECCCeEEEE
Confidence 57788999999999865 555666554
No 31
>COG1531 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.70 E-value=98 Score=20.22 Aligned_cols=24 Identities=8% Similarity=0.236 Sum_probs=20.3
Q ss_pred CcceEEEEEecCCCceeEEEEeec
Q psy2527 7 PPQKYLIVGSNNAHTKFRVLKIDR 30 (83)
Q Consensus 7 T~srfYiVGsn~~et~fRvLKIDR 30 (83)
+--+||++..+..=-..||++|-+
T Consensus 43 ~~~~~~~~~~~~~IP~HRIveIr~ 66 (77)
T COG1531 43 EVGRFYLLYQGTYIPYHRIVEIRK 66 (77)
T ss_pred ecceEEEEecCceeeeEEEEEEEe
Confidence 445699999999999999999973
No 32
>PRK00148 Maf-like protein; Reviewed
Probab=23.09 E-value=66 Score=23.46 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=22.9
Q ss_pred ccCHHHHHHHHHHhcCCCccccceeeE
Q psy2527 44 VYTADEIKQSTAAVLLPNLFWAFKIAT 70 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egNk~t~fGi~g 70 (83)
..+..+|...|+.-+--.+.+||||.|
T Consensus 128 ~l~~~~I~~Yl~~~e~~dkAGay~Iqg 154 (194)
T PRK00148 128 ELSDEEIEAYVATGEPLDCAGAFTLQG 154 (194)
T ss_pred CCCHHHHHHHHhhCCccceeeEEEecc
Confidence 378999999998865557999999999
No 33
>PRK01441 Maf-like protein; Reviewed
Probab=23.05 E-value=68 Score=23.62 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=22.4
Q ss_pred ccCHHHHHHHHHHhcCCCccccceeeE
Q psy2527 44 VYTADEIKQSTAAVLLPNLFWAFKIAT 70 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egNk~t~fGi~g 70 (83)
.+|..||...+..-+--.+.+||||.|
T Consensus 138 ~ls~~~I~~Yv~~~e~~dkAGgy~Iqg 164 (207)
T PRK01441 138 RLSREDIEAYLASGEWRGKAGGYAIQG 164 (207)
T ss_pred CCCHHHHHHHHhcCCCccccccEEecc
Confidence 478999999998854447899999998
No 34
>PRK00032 Maf-like protein; Reviewed
Probab=22.41 E-value=61 Score=23.61 Aligned_cols=27 Identities=19% Similarity=0.038 Sum_probs=22.4
Q ss_pred ccCHHHHHHHHHHhcCCCccccceeeE
Q psy2527 44 VYTADEIKQSTAAVLLPNLFWAFKIAT 70 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egNk~t~fGi~g 70 (83)
.++..+|..-++.-+--.+.+||||.|
T Consensus 128 ~l~~~~I~~Yv~~~ep~dkAG~y~Iqg 154 (190)
T PRK00032 128 TLSDEEIARYWASGEPLDKAGAYGIQG 154 (190)
T ss_pred cCCHHHHHHHHhcCCccceeeeEEecc
Confidence 578899999998855447999999998
No 35
>PRK14367 Maf-like protein; Provisional
Probab=21.25 E-value=62 Score=23.81 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=23.2
Q ss_pred ccCHHHHHHHHHHhcCCCccccceeeEE
Q psy2527 44 VYTADEIKQSTAAVLLPNLFWAFKIATS 71 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egNk~t~fGi~g~ 71 (83)
.++..||..-++.=+--.+.+||||.|+
T Consensus 134 ~ls~~~I~~Yv~~~e~~dkAGay~Iqg~ 161 (202)
T PRK14367 134 PLSSEEISAYVQSGEPMDKAGAYAVQGI 161 (202)
T ss_pred CCCHHHHHHHHhcCCccceeeeEeecCC
Confidence 5789999999988554478999999984
No 36
>PRK10536 hypothetical protein; Provisional
Probab=20.94 E-value=1.4e+02 Score=23.31 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=28.9
Q ss_pred ecCCCCCeeEecCCcccCHHHHHHHHHHhcCCCc
Q psy2527 29 DRTEPRDLILVDDKVVYTADEIKQSTAAVLLPNL 62 (83)
Q Consensus 29 DRt~p~~L~I~ED~~~YT~~Ei~~LL~~I~egNk 62 (83)
.||=++.+.|+|...-.|..+++.+|.++.++.+
T Consensus 172 Grtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk 205 (262)
T PRK10536 172 GRTFENAVVILDEAQNVTAAQMKMFLTRLGENVT 205 (262)
T ss_pred CCcccCCEEEEechhcCCHHHHHHHHhhcCCCCE
Confidence 4565668999999999999999999999987753
No 37
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=20.81 E-value=71 Score=23.10 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=22.3
Q ss_pred ccCHHHHHHHHHHhcCCCccccceeeE
Q psy2527 44 VYTADEIKQSTAAVLLPNLFWAFKIAT 70 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egNk~t~fGi~g 70 (83)
.++..||..-++.=+--.+.+||||.|
T Consensus 128 ~l~~~~I~~Yl~~~e~~dkAGay~Iqg 154 (183)
T TIGR00172 128 ALDPEEIEKYVESGEPLEKAGAFGIEG 154 (183)
T ss_pred CCCHHHHHHHHhcCCCcceeeEEEecc
Confidence 478899999998854447899999998
No 38
>PRK14361 Maf-like protein; Provisional
Probab=20.33 E-value=74 Score=23.12 Aligned_cols=27 Identities=19% Similarity=-0.032 Sum_probs=22.4
Q ss_pred ccCHHHHHHHHHHhcCCCccccceeeE
Q psy2527 44 VYTADEIKQSTAAVLLPNLFWAFKIAT 70 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egNk~t~fGi~g 70 (83)
..+..||..-++.=+--.+.+||||.|
T Consensus 123 ~ls~~~I~~Yv~~~e~~dkAG~y~Iqg 149 (187)
T PRK14361 123 ALTAAEISFYARSGEGLDKAGGYGIQG 149 (187)
T ss_pred CCCHHHHHHHHhCCCCccceeEEEecc
Confidence 578999999998844447999999998
No 39
>PRK00078 Maf-like protein; Reviewed
Probab=20.25 E-value=60 Score=23.59 Aligned_cols=27 Identities=15% Similarity=0.002 Sum_probs=21.9
Q ss_pred ccCHHHHHHHHHHhcCCCccccceeeE
Q psy2527 44 VYTADEIKQSTAAVLLPNLFWAFKIAT 70 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egNk~t~fGi~g 70 (83)
.+|..||..-++.=+=-.+.+||||.|
T Consensus 131 ~ls~~~I~~Yi~~~ep~dkAG~y~Iqg 157 (192)
T PRK00078 131 KLTDRQIRKYINTGEPMDKAGAYGIQG 157 (192)
T ss_pred CCCHHHHHHHHcCCCcccEeeEEEEcC
Confidence 468999999998744336899999999
No 40
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=20.10 E-value=1.3e+02 Score=20.18 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCCcc-cc---ceeeEEeec
Q psy2527 47 ADEIKQSTAAVLLPNLF-WA---FKIATSVHD 74 (83)
Q Consensus 47 ~~Ei~~LL~~I~egNk~-t~---fGi~g~v~~ 74 (83)
++|.+++|+.|..|.+. +. +|....|-+
T Consensus 34 ~K~~~~ml~sL~kGD~VvT~gGi~G~V~~v~d 65 (97)
T COG1862 34 MKEHQELLNSLKKGDEVVTIGGIVGTVTKVGD 65 (97)
T ss_pred HHHHHHHHHhccCCCEEEEcCCeEEEEEEEec
Confidence 57889999999999865 33 444444444
No 41
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.01 E-value=1.8e+02 Score=20.07 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=28.2
Q ss_pred eEecCCcccCHHHHHHHHHHhcCCC--ccccceeeEEeecc
Q psy2527 37 ILVDDKVVYTADEIKQSTAAVLLPN--LFWAFKIATSVHDK 75 (83)
Q Consensus 37 ~I~ED~~~YT~~Ei~~LL~~I~egN--k~t~fGi~g~v~~~ 75 (83)
.+++++..-|.+|+..-+..++.+- |.|+||.+ |+|.
T Consensus 2 ivl~~~~~v~Ps~l~~~~~~~~~~v~iKETCFG~~--i~Ge 40 (104)
T PF09875_consen 2 IVLSSEANVSPSDLAMKLYELSLPVTIKETCFGAM--IEGE 40 (104)
T ss_pred EEeCCCCCcCHHHHHHHHHhcCCCceeeecceeeE--EECC
Confidence 3566666788999999999988774 77999974 5553
No 42
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=20.01 E-value=1.7e+02 Score=21.19 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=27.0
Q ss_pred EEEEeecCCCCCe--------eEecCC-cccCHHHHHHHHHHhcCCCcc
Q psy2527 24 RVLKIDRTEPRDL--------ILVDDK-VVYTADEIKQSTAAVLLPNLF 63 (83)
Q Consensus 24 RvLKIDRt~p~~L--------~I~ED~-~~YT~~Ei~~LL~~I~egNk~ 63 (83)
.++.||-++.+.| ..-+++ ..-+++++.+.|+.+.+..-.
T Consensus 43 ~~~r~~~~~~da~g~~~~~~~~~~~~~~~~~~ee~V~eaL~tV~DPei~ 91 (174)
T TIGR03406 43 NMARIDGKDADALGKEPPPPLDLPENADGEDNEDQVWEQLRTVYDPEIP 91 (174)
T ss_pred eEEEecCcChhhhcCCCCCcCCCCcCccccccHHHHHHHHcCCCCCCCC
Confidence 5677887754444 323432 367789999999999987643
Done!