Query psy2527
Match_columns 83
No_of_seqs 102 out of 157
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:29:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lwt_X Phosphoinositide phosph 73.2 5.5 0.00019 31.9 5.2 57 6-75 10-66 (505)
2 3qc5_X Platelet binding protei 43.0 47 0.0016 26.2 5.5 42 22-63 271-313 (360)
3 3gr0_A Protein PRGH; type III 29.9 79 0.0027 22.5 4.5 35 24-58 79-115 (197)
4 1fr2_A Colicin E9 immunity pro 29.6 37 0.0013 21.3 2.4 18 44-61 9-26 (86)
5 3oos_A Alpha/beta hydrolase fa 24.5 63 0.0021 20.1 2.9 54 22-75 49-102 (278)
6 1gxg_A Colicin E8 immunity pro 24.1 40 0.0014 21.1 1.8 18 44-61 9-26 (85)
7 3u43_A Colicin-E2 immunity pro 23.8 38 0.0013 21.7 1.7 18 44-61 9-26 (94)
8 2cob_A LCOR protein; MLR2, KIA 21.4 44 0.0015 20.5 1.6 18 44-61 13-30 (70)
9 3qit_A CURM TE, polyketide syn 20.0 91 0.0031 19.3 2.9 53 23-75 54-106 (286)
10 3gr1_A Protein PRGH; type III 19.9 1.6E+02 0.0053 21.5 4.5 35 24-58 79-115 (227)
No 1
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol endoplasmic reticulum, hydrolase, membrane, transmembrane; 1.96A {Saccharomyces cerevisiae}
Probab=73.23 E-value=5.5 Score=31.92 Aligned_cols=57 Identities=5% Similarity=0.004 Sum_probs=37.2
Q ss_pred cCcceEEEEEecCCCceeEEEEeecCCCCCeeEecCCcccCHHHHHHHHHHhcCCCccccceeeEEeecc
Q psy2527 6 FPPQKYLIVGSNNAHTKFRVLKIDRTEPRDLILVDDKVVYTADEIKQSTAAVLLPNLFWAFKIATSVHDK 75 (83)
Q Consensus 6 ET~srfYiVGsn~~et~fRvLKIDRt~p~~L~I~ED~~~YT~~Ei~~LL~~I~egNk~t~fGi~g~v~~~ 75 (83)
+|+.+||+--++.+...=-+|-|||.+. ++.+.+.+.. -.++.-...+||+||++=+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~i~r~~~-~~~~~~~~~~------------~~~~~~~~i~GilG~i~l~ 66 (505)
T 3lwt_X 10 QNADGIFFKLAEGKGTNDAVIHLANQDQ-GVRVLGAEEF------------PVQGEVVKIASLMGFIKLK 66 (505)
T ss_dssp EETTEEEEEESSCCSSCCCEEEEETTTC-CEEEECGGGS------------CSSSCCEEESEEEEEEEET
T ss_pred ECCCEEEEEECCCCCCCcceEEEEcCCC-eEEecccccC------------CCcCceeEEEEEEEEEEEC
Confidence 6899999988653211224999999965 4666553211 1234456779999999844
No 2
>3qc5_X Platelet binding protein GSPB; carbohydrate/sugar binding, sugar binding protein; HET: GOL; 1.40A {Streptococcus gordonii} PDB: 3qc6_X 4i8e_X* 3qd1_X*
Probab=42.97 E-value=47 Score=26.19 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=35.2
Q ss_pred eeEE-EEeecCCCCCeeEecCCcccCHHHHHHHHHHhcCCCcc
Q psy2527 22 KFRV-LKIDRTEPRDLILVDDKVVYTADEIKQSTAAVLLPNLF 63 (83)
Q Consensus 22 ~fRv-LKIDRt~p~~L~I~ED~~~YT~~Ei~~LL~~I~egNk~ 63 (83)
.||+ +|++-..|.+-..+.|+.-.|+.|-.++.+.|.+.|..
T Consensus 271 ~fklviKy~P~vP~~KV~V~DPnnLTd~EKekVkeaVKkANpd 313 (360)
T 3qc5_X 271 QFKLIIRFRIKTPENTVFVNNPNQLTEVEKNLVREAVKKSNPD 313 (360)
T ss_dssp EEEEEEECCCCCCSSCEEESCTTSCCHHHHHHHHHHHHHHCTT
T ss_pred cEEEEEecCCCCCCcceEecCcccCCHHHHHHHHHHHHHhCCC
Confidence 4554 45666788888899999999999999999999988865
No 3
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=29.93 E-value=79 Score=22.54 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=27.9
Q ss_pred EEEEeecCCCCCeeE--ecCCcccCHHHHHHHHHHhc
Q psy2527 24 RVLKIDRTEPRDLIL--VDDKVVYTADEIKQSTAAVL 58 (83)
Q Consensus 24 RvLKIDRt~p~~L~I--~ED~~~YT~~Ei~~LL~~I~ 58 (83)
+-+|||.+.|....| ......+|.++...|.+.+.
T Consensus 79 ~~~~i~l~~P~~P~l~ls~~r~~l~~~~~~~L~~~l~ 115 (197)
T 3gr0_A 79 AYYRIHFDEPRKPVFWLSRQRNTMSKKELEVLSQKLR 115 (197)
T ss_dssp CEEEEECSSTTSCEEEEESSSCCCCHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCCEEEEEeccccCCHHHHHHHHHHHH
Confidence 347899998886666 88889999999888876654
No 4
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=29.58 E-value=37 Score=21.34 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=16.5
Q ss_pred ccCHHHHHHHHHHhcCCC
Q psy2527 44 VYTADEIKQSTAAVLLPN 61 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egN 61 (83)
.||+.|..+|++.|-.++
T Consensus 9 DyTe~Efi~lv~~I~~~~ 26 (86)
T 1fr2_A 9 DYTEAEFLQLVTTICNAD 26 (86)
T ss_dssp GSBHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHhCC
Confidence 799999999999998776
No 5
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis}
Probab=24.48 E-value=63 Score=20.10 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=29.1
Q ss_pred eeEEEEeecCCCCCeeEecCCcccCHHHHHHHHHHhcCCCccccceeeEEeecc
Q psy2527 22 KFRVLKIDRTEPRDLILVDDKVVYTADEIKQSTAAVLLPNLFWAFKIATSVHDK 75 (83)
Q Consensus 22 ~fRvLKIDRt~p~~L~I~ED~~~YT~~Ei~~LL~~I~egNk~t~fGi~g~v~~~ 75 (83)
.|+|+-+|...-+.-.-..+...|+-.++.+-+..+-+.-...-+.++|..-|.
T Consensus 49 ~~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lvG~S~Gg 102 (278)
T 3oos_A 49 HYSVYLVNLKGCGNSDSAKNDSEYSMTETIKDLEAIREALYINKWGFAGHSAGG 102 (278)
T ss_dssp TSEEEEECCTTSTTSCCCSSGGGGSHHHHHHHHHHHHHHTTCSCEEEEEETHHH
T ss_pred CceEEEEcCCCCCCCCCCCCcccCcHHHHHHHHHHHHHHhCCCeEEEEeecccH
Confidence 699999999733222222334567765554433332222222347777877664
No 6
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=24.13 E-value=40 Score=21.13 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=16.1
Q ss_pred ccCHHHHHHHHHHhcCCC
Q psy2527 44 VYTADEIKQSTAAVLLPN 61 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egN 61 (83)
.||+.|..+|++.|-+++
T Consensus 9 DyTe~Efi~lv~~I~~~~ 26 (85)
T 1gxg_A 9 DYTETEFKKIIEDIINCE 26 (85)
T ss_dssp TSCHHHHHHHHHHHHHTS
T ss_pred hcCHHHHHHHHHHHHhCC
Confidence 799999999999997665
No 7
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=23.78 E-value=38 Score=21.75 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=15.7
Q ss_pred ccCHHHHHHHHHHhcCCC
Q psy2527 44 VYTADEIKQSTAAVLLPN 61 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egN 61 (83)
.||++|..+||+.|-+.+
T Consensus 9 DyTe~Efi~lv~~I~~~~ 26 (94)
T 3u43_A 9 DYTEAEFLEFVKKICRAE 26 (94)
T ss_dssp GSBHHHHHHHHHHHHHTC
T ss_pred hcCHHHHHHHHHHHHhcC
Confidence 799999999999997654
No 8
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=21.42 E-value=44 Score=20.52 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=16.7
Q ss_pred ccCHHHHHHHHHHhcCCC
Q psy2527 44 VYTADEIKQSTAAVLLPN 61 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egN 61 (83)
.||+.+|.+-+.++.+|+
T Consensus 13 ~Yte~~L~~Ai~aVr~g~ 30 (70)
T 2cob_A 13 QYNSEILEEAISVVMSGK 30 (70)
T ss_dssp CCCHHHHHHHHHHHHTTS
T ss_pred ccCHHHHHHHHHHHHcCC
Confidence 699999999999999886
No 9
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L}
Probab=19.98 E-value=91 Score=19.27 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=28.0
Q ss_pred eEEEEeecCCCCCeeEecCCcccCHHHHHHHHHHhcCCCccccceeeEEeecc
Q psy2527 23 FRVLKIDRTEPRDLILVDDKVVYTADEIKQSTAAVLLPNLFWAFKIATSVHDK 75 (83)
Q Consensus 23 fRvLKIDRt~p~~L~I~ED~~~YT~~Ei~~LL~~I~egNk~t~fGi~g~v~~~ 75 (83)
|+|+-+|...-+.-.-..+...|+-.++.+-+..+-+.-...-+.++|..-|.
T Consensus 54 ~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg 106 (286)
T 3qit_A 54 YRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMGA 106 (286)
T ss_dssp CEEEEECCTTSTTSCCCSSGGGCSHHHHHHHHHHHHHHSCSSCEEEEEETHHH
T ss_pred eEEEEECCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCEEEEEeCHHH
Confidence 89999998732211111223456665544443333222223447888887765
No 10
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=19.85 E-value=1.6e+02 Score=21.48 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=27.1
Q ss_pred EEEEeecCCCCCeeE--ecCCcccCHHHHHHHHHHhc
Q psy2527 24 RVLKIDRTEPRDLIL--VDDKVVYTADEIKQSTAAVL 58 (83)
Q Consensus 24 RvLKIDRt~p~~L~I--~ED~~~YT~~Ei~~LL~~I~ 58 (83)
+-+|||.+.|..-.| ......++++|...|.+.+.
T Consensus 79 ~~~~i~l~~P~~Pvl~l~~~r~~~~~~~~~~L~~~l~ 115 (227)
T 3gr1_A 79 AYYRIHFDEPRKPVFWLSRQRNTMSKKELEVLSQKLR 115 (227)
T ss_dssp CEEEEECSSTTSCEEEEETTTCCCCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCCEEEEEeccccCCHHHHHHHHHHHH
Confidence 347899998875554 88888899999888876654
Done!