Query psy2527
Match_columns 83
No_of_seqs 102 out of 157
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 18:29:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2527.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2527hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fura1 b.45.1.1 (A:16-208) Hy 31.6 32 0.0023 22.1 4.4 29 43-78 2-30 (193)
2 d2hq9a1 b.45.1.1 (A:1-148) Hyp 29.8 32 0.0023 20.2 3.8 27 44-77 5-31 (148)
3 d2hjqa1 a.140.3.2 (A:50-103) H 29.7 7.2 0.00052 21.6 0.6 16 40-55 3-18 (54)
4 d1t3ya1 d.109.1.2 (A:2-131) Co 27.9 49 0.0035 19.5 4.5 49 16-74 18-66 (130)
5 d1z05a3 c.55.1.10 (A:81-208) T 23.7 26 0.0019 19.6 2.5 21 11-31 4-24 (128)
6 d1b6ga_ c.69.1.8 (A:) Haloalka 21.9 28 0.002 21.3 2.4 54 21-74 73-126 (310)
7 d1twda_ c.1.30.1 (A:) Copper h 21.3 11 0.00079 26.1 0.3 30 43-75 64-93 (247)
8 d2vlqa1 a.28.2.1 (A:4-84) ImmE 20.1 26 0.0019 20.6 1.9 20 44-63 6-25 (81)
9 d2ja9a1 b.40.4.5 (A:62-151) S1 20.0 42 0.003 19.2 2.9 18 23-40 60-77 (90)
10 d1h2ba2 c.2.1.1 (A:155-326) Al 18.8 32 0.0023 20.6 2.2 18 43-60 154-171 (172)
No 1
>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=31.62 E-value=32 Score=22.11 Aligned_cols=29 Identities=3% Similarity=0.115 Sum_probs=23.2
Q ss_pred cccCHHHHHHHHHHhcCCCccccceeeEEeecceee
Q psy2527 43 VVYTADEIKQSTAAVLLPNLFWAFKIATSVHDKVSL 78 (83)
Q Consensus 43 ~~YT~~Ei~~LL~~I~egNk~t~fGi~g~v~~~~~~ 78 (83)
..|+++||.++|+.-. ++-+|+++++-..
T Consensus 2 ~~~d~eei~~iL~~~~-------~~~la~~~~g~Py 30 (193)
T d2fura1 2 ASYSDEDLVAMLDRNF-------TCTVSFIDGGIPY 30 (193)
T ss_dssp EECCHHHHHHHHHHCS-------EEEEEEEETTEEE
T ss_pred CcCCHHHHHHHHhhCC-------EEEEEEeeCCeEE
Confidence 3689999999999733 8889999887543
No 2
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]}
Probab=29.85 E-value=32 Score=20.15 Aligned_cols=27 Identities=15% Similarity=-0.002 Sum_probs=21.3
Q ss_pred ccCHHHHHHHHHHhcCCCccccceeeEEeeccee
Q psy2527 44 VYTADEIKQSTAAVLLPNLFWAFKIATSVHDKVS 77 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egNk~t~fGi~g~v~~~~~ 77 (83)
..|.+|+.++|+.-. +|.+++++++..
T Consensus 5 ~ls~~E~~~~L~~~~-------~g~Lat~~~g~P 31 (148)
T d2hq9a1 5 TLSALECTKVLTANR-------VGRLACAKDGQP 31 (148)
T ss_dssp ECCHHHHHHHHHHCC-------EEEEEEEETTEE
T ss_pred cCCHHHHHHHHhcCC-------EEEEEEEeCCcE
Confidence 468899999998743 888999887754
No 3
>d2hjqa1 a.140.3.2 (A:50-103) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=29.73 E-value=7.2 Score=21.60 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=12.8
Q ss_pred cCCcccCHHHHHHHHH
Q psy2527 40 DDKVVYTADEIKQSTA 55 (83)
Q Consensus 40 ED~~~YT~~Ei~~LL~ 55 (83)
+||..||+.|+..+-+
T Consensus 3 ddpinyteselk~m~k 18 (54)
T d2hjqa1 3 DDPINYTESELKGMNK 18 (54)
T ss_dssp CCCSCCCHHHHHTCCH
T ss_pred CCcccccHHHHhhccc
Confidence 6899999999876543
No 4
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.87 E-value=49 Score=19.52 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=33.7
Q ss_pred ecCCCceeEEEEeecCCCCCeeEecCCcccCHHHHHHHHHHhcCCCccccceeeEEeec
Q psy2527 16 SNNAHTKFRVLKIDRTEPRDLILVDDKVVYTADEIKQSTAAVLLPNLFWAFKIATSVHD 74 (83)
Q Consensus 16 sn~~et~fRvLKIDRt~p~~L~I~ED~~~YT~~Ei~~LL~~I~egNk~t~fGi~g~v~~ 74 (83)
.|...+.|=++++| .. ..+.+... .++.+|+..|.+. ...||++-+.++
T Consensus 18 ~~~~~~~w~if~~d---~~-~~v~~~~~----~~~~e~~~~l~~~--~~~y~~~r~~~~ 66 (130)
T d1t3ya1 18 DDGSAVIWVTFKYD---GS-TIVPGEQG----AEYQHFIQQCTDD--VRLFAFVRFTTG 66 (130)
T ss_dssp CTTSSCCEEEEEEE---TT-EEEEEEEE----SSHHHHHHHCCTT--CEEEEEEEEEEC
T ss_pred cCCCCcEEEEEEeC---CC-EEEEcCCC----CCHHHHHHhCCCC--ceEEEEEEEEec
Confidence 35567899999997 22 33444333 3577888888754 567999998875
No 5
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}
Probab=23.74 E-value=26 Score=19.59 Aligned_cols=21 Identities=0% Similarity=-0.024 Sum_probs=18.1
Q ss_pred EEEEEecCCCceeEEEEeecC
Q psy2527 11 YLIVGSNNAHTKFRVLKIDRT 31 (83)
Q Consensus 11 fYiVGsn~~et~fRvLKIDRt 31 (83)
||.+|-+-..+..++.=+|..
T Consensus 4 ~~~lgi~ig~~~i~~~l~d~~ 24 (128)
T d1z05a3 4 WQFLSMRLGRGYLTIALHELG 24 (128)
T ss_dssp EEEEEEEEETTEEEEEEEETT
T ss_pred CEEEEEEECCCEEEEEEEcCC
Confidence 677899999999999988887
No 6
>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]}
Probab=21.88 E-value=28 Score=21.31 Aligned_cols=54 Identities=13% Similarity=-0.069 Sum_probs=30.3
Q ss_pred ceeEEEEeecCCCCCeeEecCCcccCHHHHHHHHHHhcCCCccccceeeEEeec
Q psy2527 21 TKFRVLKIDRTEPRDLILVDDKVVYTADEIKQSTAAVLLPNLFWAFKIATSVHD 74 (83)
Q Consensus 21 t~fRvLKIDRt~p~~L~I~ED~~~YT~~Ei~~LL~~I~egNk~t~fGi~g~v~~ 74 (83)
..|||+-+|...-+.=.-..|...|+-..+.+.|..+-+......+-++|..-|
T Consensus 73 ~~~~vi~~Dl~G~G~S~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~lvGhS~G 126 (310)
T d1b6ga_ 73 SGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWG 126 (310)
T ss_dssp TTCEEEEECCTTSTTSCEESCGGGCCHHHHHHHHHHHHHHHTCCSEEEEECTHH
T ss_pred cCceEEEeeecCccccccccccccccccccccchhhhhhhccccccccccceec
Confidence 359999999983332222345667777666665555443322333455665444
No 7
>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}
Probab=21.30 E-value=11 Score=26.07 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=22.3
Q ss_pred cccCHHHHHHHHHHhcCCCccccceeeEEeecc
Q psy2527 43 VVYTADEIKQSTAAVLLPNLFWAFKIATSVHDK 75 (83)
Q Consensus 43 ~~YT~~Ei~~LL~~I~egNk~t~fGi~g~v~~~ 75 (83)
=.||..|+..+++.|..-.+ .|+-|||=|-
T Consensus 64 F~Ys~~E~~~M~~di~~~k~---~G~dGvV~G~ 93 (247)
T d1twda_ 64 FCYSDGEFAAILEDVRTVRE---LGFPGLVTGV 93 (247)
T ss_dssp SCCCHHHHHHHHHHHHHHHH---TTCSEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCeEEEEE
Confidence 38999999999999885544 4566666553
No 8
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=20.06 E-value=26 Score=20.60 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=16.9
Q ss_pred ccCHHHHHHHHHHhcCCCcc
Q psy2527 44 VYTADEIKQSTAAVLLPNLF 63 (83)
Q Consensus 44 ~YT~~Ei~~LL~~I~egNk~ 63 (83)
.||++|..++|+.|-..|..
T Consensus 6 DYTE~EFl~fl~~i~~~~~~ 25 (81)
T d2vlqa1 6 DYTEAEFLQLVTTICNADTS 25 (81)
T ss_dssp GSCHHHHHHHHHHHHHTCSS
T ss_pred ccCHHHHHHHHHHHHhcCCC
Confidence 69999999999999866543
No 9
>d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=19.96 E-value=42 Score=19.15 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=11.3
Q ss_pred eEEEEeecCCCCCeeEec
Q psy2527 23 FRVLKIDRTEPRDLILVD 40 (83)
Q Consensus 23 fRvLKIDRt~p~~L~I~E 40 (83)
-||..+|+...-+|...+
T Consensus 60 arV~~v~~~~~~~Lsc~~ 77 (90)
T d2ja9a1 60 ARVCTAEKELEAEIECFD 77 (90)
T ss_dssp EEEEECCTTSCCEEESSC
T ss_pred EEEEEECCCCCEEEEEec
Confidence 477777776444666554
No 10
>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=18.76 E-value=32 Score=20.57 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=16.2
Q ss_pred cccCHHHHHHHHHHhcCC
Q psy2527 43 VVYTADEIKQSTAAVLLP 60 (83)
Q Consensus 43 ~~YT~~Ei~~LL~~I~eg 60 (83)
..|+++|+.++|+.+.+|
T Consensus 154 ~~~~~~d~~~~l~l~~~G 171 (172)
T d1h2ba2 154 LVGNYVELHELVTLALQG 171 (172)
T ss_dssp CSCCHHHHHHHHHHHHTT
T ss_pred EecCHHHHHHHHHHHHcC
Confidence 579999999999999887
Done!