RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2527
         (83 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.4 bits (70), Expect = 0.023
 Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 7/50 (14%)

Query: 2   DISCFPPQKYLIVGSNNAHTKFRVLKIDRTEPRDLILVDDKVVYTADEIK 51
           D S     +      ++   + R L   +     L+++ +  V  A    
Sbjct: 218 DHSSNIKLRI-----HSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWN 260


>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
           adenosine triphosph archaeal proteins, cation transport
           proteins; 10.00A {Archaeoglobus fulgidus}
          Length = 723

 Score = 25.2 bits (56), Expect = 3.1
 Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 8/17 (47%)

Query: 50  IKQSTAAVLLPNLFWAF 66
           IKQ        N+FWA 
Sbjct: 658 IKQ--------NIFWAL 666


>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
          modeling,de novo modeling,ribos proteins,novel
          ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
          PDB: 3izr_T
          Length = 209

 Score = 24.7 bits (53), Expect = 3.6
 Identities = 3/22 (13%), Positives = 8/22 (36%)

Query: 36 LILVDDKVVYTADEIKQSTAAV 57
           +L   K     D  + +  ++
Sbjct: 13 SVLKCGKGKVWLDPNEVNEISM 34


>3q62_A 3-hydroxydecanoyl-[acyl-carrier-protein] dehydrat; structural
           genomics, center for structural genomics of infec
           diseases, csgid; HET: MES; 1.40A {Yersinia
           pseudotuberculosis} PDB: 1mka_A* 1mkb_A
          Length = 175

 Score = 24.9 bits (54), Expect = 3.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)

Query: 37  ILVDDKVVYTADEIK 51
           +LVD KV+YTA ++K
Sbjct: 151 VLVDGKVIYTATDLK 165


>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
           copper(II) transporter, MEMB protein, hydrolase; 1.59A
           {Archaeoglobus fulgidus} PDB: 3sky_A*
          Length = 280

 Score = 24.7 bits (55), Expect = 4.4
 Identities = 1/17 (5%), Positives = 2/17 (11%), Gaps = 8/17 (47%)

Query: 50  IKQSTAAVLLPNLFWAF 66
                         W+ 
Sbjct: 267 FHG--------LSAWSH 275


>2cf2_C Fatty acid synthase, DH domain; transferase, fatty acid metabolism,
           fatty acid biosynthesis, multienzyme; 4.30A {Sus scrofa}
           SCOP: d.38.1.2
          Length = 342

 Score = 24.5 bits (52), Expect = 4.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)

Query: 37  ILVDDKVVYTADEIK 51
           +LVD +++YTA ++K
Sbjct: 318 VLVDGRLIYTASDLK 332


>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
           hydrolase, ION transp magnesium, Cu+, membrane,
           metal-binding; 3.20A {Legionella pneumophila subsp}
          Length = 736

 Score = 24.4 bits (54), Expect = 4.8
 Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 8/17 (47%)

Query: 50  IKQSTAAVLLPNLFWAF 66
           I+Q        NLF+AF
Sbjct: 678 IRQ--------NLFFAF 686


>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
           adenosine triphosph archaeal proteins, cation transport
           proteins; 10.00A {Archaeoglobus fulgidus}
          Length = 645

 Score = 24.4 bits (54), Expect = 5.3
 Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 8/17 (47%)

Query: 50  IKQSTAAVLLPNLFWAF 66
           IKQ        N+FWA 
Sbjct: 580 IKQ--------NIFWAL 588


>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic
          ribosome,homology modeling,de novo modeling,ribos
          proteins,novel ribosomal proteins; NMR {Saccharomyces
          cerevisiae} PDB: 3izs_t
          Length = 106

 Score = 23.9 bits (51), Expect = 6.1
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 36 LILVDDKVVYTADEIKQSTAAV 57
          LIL D ++  +++++   T A 
Sbjct: 12 LILADSEIEISSEKLLTLTNAA 33


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0856    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,178,142
Number of extensions: 56516
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 9
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.2 bits)