RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2527
         (83 letters)



>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter
           succinogenes [TaxId: 833]}
          Length = 243

 Score = 23.9 bits (51), Expect = 2.9
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 16  SNNAHTKFRVLKIDRTEPRDLILVDDKVVYTAD 48
           S  A   F    ++ T       VD + V   +
Sbjct: 91  SPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTE 123


>d1mkaa_ d.38.1.2 (A:) beta-Hydroxydecanol thiol ester dehydrase
           {Escherichia coli [TaxId: 562]}
          Length = 171

 Score = 23.8 bits (51), Expect = 2.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)

Query: 37  ILVDDKVVYTADEIK 51
           +LVD +++YTA ++K
Sbjct: 147 VLVDGRLIYTASDLK 161


>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 143

 Score = 22.1 bits (47), Expect = 9.8
 Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 1   MDISCFPPQKYLIVGSNNAHTKFRVLKIDRT--EPRDLILVDDKVV--YTADEIKQSTAA 56
           ++  CF   K L         K  +   D      RD       V+  Y ADE +   A 
Sbjct: 46  LEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAY 105

Query: 57  VLLPNLF 63
             LP   
Sbjct: 106 GELPEHA 112


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 282,891
Number of extensions: 9868
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 3
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.3 bits)