Query psy2532
Match_columns 410
No_of_seqs 184 out of 417
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 18:37:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1892|consensus 100.0 2.1E-64 4.6E-69 537.0 20.6 273 1-304 673-946 (1629)
2 PF01843 DIL: DIL domain; Int 100.0 3E-32 6.6E-37 230.5 6.9 105 64-169 1-105 (105)
3 KOG1892|consensus 99.9 8.6E-28 1.9E-32 258.0 2.4 238 139-407 377-629 (1629)
4 COG5022 Myosin heavy chain [Cy 99.2 4.6E-11 1E-15 135.7 12.4 150 32-183 1252-1401(1463)
5 PF04091 Sec15: Exocyst comple 95.8 0.03 6.5E-07 56.5 7.8 126 35-164 178-311 (311)
6 PF04437 RINT1_TIP1: RINT-1 / 91.3 1.1 2.4E-05 47.7 9.6 100 36-140 355-454 (494)
7 PF07393 Sec10: Exocyst comple 68.3 49 0.0011 37.1 11.5 104 35-147 577-681 (710)
8 PF06046 Sec6: Exocyst complex 62.8 81 0.0018 34.0 11.6 143 36-186 397-546 (566)
9 PF14964 DUF4507: Domain of un 46.5 3.7E+02 0.0081 28.2 14.4 174 43-238 72-257 (362)
10 KOG4112|consensus 25.2 1.6E+02 0.0034 25.4 4.8 39 364-402 19-57 (101)
11 PF00536 SAM_1: SAM domain (St 24.9 54 0.0012 24.5 1.9 42 100-144 4-45 (64)
12 PF10474 DUF2451: Protein of u 24.6 6.6E+02 0.014 24.4 11.5 44 38-81 94-141 (234)
13 KOG0412|consensus 22.4 8.1E+02 0.018 28.2 10.9 72 89-162 690-767 (773)
No 1
>KOG1892|consensus
Probab=100.00 E-value=2.1e-64 Score=536.96 Aligned_cols=273 Identities=57% Similarity=0.954 Sum_probs=255.3
Q ss_pred CCCccCCCCCCCCCCCCcccchhhhhhhhHhhhcccCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHH
Q psy2532 1 MPSFLSDHDDHNGEADDVSTSSVLGVLMSAMALLRGCRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNR 80 (410)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~s~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~ 80 (410)
||+||+++.++.+.. .+||++|+.+|.+||.|+||++|++|+|+|||||||+++||+
T Consensus 673 ~~afLden~~~~~a~-----------------------gdVlh~L~~aM~llRrCrvNAALTIQLfsqLfH~iN~~~FN~ 729 (1629)
T KOG1892|consen 673 MPAFLDENSLQRPAI-----------------------GDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNR 729 (1629)
T ss_pred HHHHhhhccccCccc-----------------------cchHHHhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhh
Confidence 688999888877553 678999999999999999999999999999999999999999
Q ss_pred HHhc-CCCCcchhhhHHHHhhHHHHHHHHHHcCCchHHHHhhHhHHHHHHhhhCCCCCHHHHHHHHHhhhhcCHHHHHHH
Q psy2532 81 LVAN-NSIYCSKAWGVRIKNRLAHIQMWAERQGLELAADCHLAKLMQAAHLLQAPKYTGDELAELTSTCFKLNSLQLRAL 159 (410)
Q Consensus 81 LL~~-r~~~cs~s~GvqIr~NLs~LeeW~~~~gL~~aa~~~L~~L~QAa~LLq~~K~s~~Dl~~i~~~C~~LN~~QL~~L 159 (410)
|+.. ...+|+-.||..|+++|..||.||+++|||.+|+|||.+|+||++||+++|...+|+.++.++|++||++|+.+|
T Consensus 730 lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAdCHL~ri~Qaa~lL~~~K~a~ddi~~l~stCfkLNSLQ~~al 809 (1629)
T KOG1892|consen 730 LVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAADCHLSRIVQAATLLTMDKYAPDDIPNLNSTCFKLNSLQLQAL 809 (1629)
T ss_pred hcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhhccHHHHHHHHHHHhccccChhhHHhhccchhhcchHHHHHH
Confidence 9992 388999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCHHHHHHHHHhhhhhhhhhhhhCCCcccccccccCCCCcccCCCCcccccccCCChhHHHhhhHHhh
Q psy2532 160 LLKYQPTPDEPRLPHEVIENVVRVAENLADELARSDGRDVCLEEESELLLPFLLPDDGYSCEVVRGVPQGLIEFISPLQA 239 (410)
Q Consensus 160 L~~Y~p~~~E~~Ip~e~i~~Vv~~ae~~~Da~~~~dG~~i~l~Es~dl~~P~lLP~dGy~~dl~~~vp~~l~~FL~pL~~ 239 (410)
|.+|.++++|.+||.++++.+++++++.+|+++++||++|+|+|+++|++||+||+|||+||++|+||+||.+||+||||
T Consensus 810 Lq~~~~~~~e~~~p~dlvd~v~r~AE~~ADeLtr~DGreV~LEEspeL~LpfLlP~DGyscdvvR~iP~GL~~fL~pLqq 889 (1629)
T KOG1892|consen 810 LQNYHCAPDEPFIPTDLVDNVVRVAENTADELTRSDGREVQLEESPELQLPFLLPEDGYSCDVVRNIPNGLQEFLDPLQQ 889 (1629)
T ss_pred HhcCCCCCCCCCCchHHHHHHHHHHHhhhhHhhhccCceeecccCcccccceeecCCCceeeeeccCChhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccCCCCCCcceeeecCCCCCCCCcccCCCccCCCCCCCCCCCCCCceeEEEecccCCccc
Q psy2532 240 AGLCRLSAQPTSNGYWTVYMGPHNSQGPVIRSPSAMSNRSAGYIANREEPDIQVIKLHKSSTYER 304 (410)
Q Consensus 240 ~glc~~~~~p~~~g~wtv~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~~~~i~~~k~~~~~~ 304 (410)
+|+||+.++|.+.|.||+||++++. .+.+++.+.+.- +-..+|+|..|+++|+ ||||
T Consensus 890 rg~Crl~~~p~spg~wT~ymh~~~~-----~ss~a~~n~l~q--~~~~~pei~~vtL~Kn-nGmG 946 (1629)
T KOG1892|consen 890 RGFCRLIPHPRSPGTWTIYMHGADY-----ESSLARENELAQ--PLRKEPEIITVTLKKN-NGMG 946 (1629)
T ss_pred ccceeecCCCCCCceeEEEeecccc-----ccchhhhhhccc--hhhcCCceEEEEEecc-CCce
Confidence 9999999999999999999999984 555566554431 1247899999999999 6666
No 2
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.97 E-value=3e-32 Score=230.45 Aligned_cols=105 Identities=46% Similarity=0.681 Sum_probs=93.9
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCcchhhhHHHHhhHHHHHHHHHHcCCchHHHHhhHhHHHHHHhhhCCCCCHHHHHH
Q psy2532 64 QLFSKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKNRLAHIQMWAERQGLELAADCHLAKLMQAAHLLQAPKYTGDELAE 143 (410)
Q Consensus 64 QlFsQLF~fINa~lFN~LL~~r~~~cs~s~GvqIr~NLs~LeeW~~~~gL~~aa~~~L~~L~QAa~LLq~~K~s~~Dl~~ 143 (410)
|+|+|||||||+.+||+||. ++++|+|++|+|||+||+.|++||+++|++.++.+||.+++||++|||++|++.+|++.
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~-~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~~~~~l~~l~Qa~~lL~~~k~~~~d~~~ 79 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLL-RRKYCSWSKGVQIRYNLSELEDWARSHGLEEAAEEHLQPLSQAANLLQLRKSTLQDWDS 79 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-HSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH-HHHCHHHHHHHHHCCC--SSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHC-CCCccccccHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence 89999999999999999999 89999999999999999999999999999999888999999999999999988999999
Q ss_pred HHHhhhhcCHHHHHHHHhcCCCCCCC
Q psy2532 144 LTSTCFKLNSLQLRALLLKYQPTPDE 169 (410)
Q Consensus 144 i~~~C~~LN~~QL~~LL~~Y~p~~~E 169 (410)
+.+.|++||+.||++||++|+|+++|
T Consensus 80 ~~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 80 LRETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HCCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HHHHcccCCHHHHHHHHHhCCCcCCC
Confidence 99999999999999999999999886
No 3
>KOG1892|consensus
Probab=99.93 E-value=8.6e-28 Score=257.96 Aligned_cols=238 Identities=25% Similarity=0.372 Sum_probs=181.9
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhhhhhhhhhCCCcccccccccCCCCcccCCCCc
Q psy2532 139 DELAELTSTCFKLNSLQLRALLLKYQPTPDEPRLPHEVIENVVRVAENLADELARSDGRDVCLEEESELLLPFLLPDDGY 218 (410)
Q Consensus 139 ~Dl~~i~~~C~~LN~~QL~~LL~~Y~p~~~E~~Ip~e~i~~Vv~~ae~~~Da~~~~dG~~i~l~Es~dl~~P~lLP~dGy 218 (410)
.+++++++.-..-|++||.. ..++| .+|...++++|+++++.+.|++++++|++|. ++..|+ +|.
T Consensus 377 ~~vtEVGs~~~~~~~iqLfG--P~Iqp----rHc~it~meGVvTvTP~~~DA~t~VnGh~is--qttiL~-------~G~ 441 (1629)
T KOG1892|consen 377 LSVTEVGSEKLDDNSIQLFG--PGIQP----RHCDITNMEGVVTVTPRSMDAETYVNGHRIS--QTTILQ-------SGM 441 (1629)
T ss_pred cCceeccccccCCcceeeeC--CCCCc----cccchhhccceEEecccccchhhhccceecc--hhhhhc-------cCC
Confidence 34556666655667888877 66665 6999999999999999999999999999876 665555 376
Q ss_pred ccccccCCChhHHHhhhHHhhccCccccCCCC-CCcceeeecCCCCC--CCCcccCCCccCCCCCCC-----CC----CC
Q psy2532 219 SCEVVRGVPQGLIEFISPLQAAGLCRLSAQPT-SNGYWTVYMGPHNS--QGPVIRSPSAMSNRSAGY-----IA----NR 286 (410)
Q Consensus 219 ~~dl~~~vp~~l~~FL~pL~~~glc~~~~~p~-~~g~wtv~~~~~~~--~~~~~~~~s~~~~~~~~~-----~~----~~ 286 (410)
. ++..-++.++|+++-+++.+.+...-|. ..|. +...+|+. +. +..|+|+.+.+.+.. ++ ++
T Consensus 442 ~---v~fGa~hsfkF~dss~d~~~~~~~~~~r~n~~~--~Q~qtf~~~~~~-sr~pTs~~t~~d~~~~~~sa~Ss~~~~d 515 (1629)
T KOG1892|consen 442 K---VQFGASHSFKFVDSSQDHALAKRVKGPRHNPGI--VQEQTFDLDIHS-SRLPTSKSTTRDDSDRVSSASSSAERGD 515 (1629)
T ss_pred E---EEeccceeEEecCCchhhhhhhcccCcccCchh--hhhhccchhhhh-ccCCCCCCCccccccccccccccchhhh
Confidence 6 4555779999999999998888654443 2221 12223332 22 556777776555332 11 23
Q ss_pred CCCceeEEEecccCCcccccCCCcccccceeeehhhhHHHHHHHHHhccCCCCCceecchhHHHHHHHHhhcccCCCCCC
Q psy2532 287 EEPDIQVIKLHKSSTYERYTRGTDPILPAVLEIREETEEAFLHALITDLEPSAPSFKLAPAYTLYLAARYRASTHYRPEL 366 (410)
Q Consensus 287 ~~p~~~~i~~~k~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~i~~~~~~~~~fkl~p~y~ly~~~r~~~~~~~~~~~ 366 (410)
++| .++.+....+.+.......-+||+|||+|..|+.||++||+ .+.+|+|||++|+| ||++|++|||++
T Consensus 516 ~~~---h~~~n~~p~Y~~~~~~~~~~~~~si~~~d~~~~sfL~~vi~-~~a~t~~~~~s~~y------~y~~S~~yrp~~ 585 (1629)
T KOG1892|consen 516 VKP---HIRVNQQPDYRRQESRTQDASGASIEFRDSSEDSFLSAVIN-TNASTVHFKLSPTY------RYVLSNQYRPDI 585 (1629)
T ss_pred hhh---hhhcccCCccccccccCccccccceecccCcHHHHHHHHHh-CcccccccccCccc------chhhhccccccc
Confidence 344 45555555566555555567899999999999999999999 99999999999999 899999999999
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHh---hhhhhHHHhhhhhhc
Q psy2532 367 IPTERAHRLTLVLVRVAAMIHNVIEM---LLMSIVFCFRIVTVM 407 (410)
Q Consensus 367 ~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 407 (410)
+||||+|||++++|||++||++|||| ..--+.||++-..|.
T Consensus 586 ~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEf 629 (1629)
T KOG1892|consen 586 SPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEF 629 (1629)
T ss_pred CccccchhHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHH
Confidence 99999999999999999999999999 334688999866553
No 4
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.23 E-value=4.6e-11 Score=135.69 Aligned_cols=150 Identities=22% Similarity=0.357 Sum_probs=139.9
Q ss_pred hhcccCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCcchhhhHHHHhhHHHHHHHHHHc
Q psy2532 32 ALLRGCRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKNRLAHIQMWAERQ 111 (410)
Q Consensus 32 ~~~~~s~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~LL~~r~~~cs~s~GvqIr~NLs~LeeW~~~~ 111 (410)
.+......+++.+++.+..++..+.+.+.+..-.+.++..++|..+||.|.. +.+-..|+.|-++.+|.+.+.+||+.+
T Consensus 1252 ~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~-~~~~~~~k~~~~~~~n~~~~~~w~~~~ 1330 (1463)
T COG5022 1252 TPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRT-KASSLRWKSATEVNYNSEELDDWCREF 1330 (1463)
T ss_pred CcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhc-ccCccchhhcccccccchhhhHHHHhh
Confidence 3445678899999999999999999999999999999999999999999999 888899999999999999999999999
Q ss_pred CCchHHHHhhHhHHHHHHhhhCCCCCHHHHHHHHHhhhhcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHh
Q psy2532 112 GLELAADCHLAKLMQAAHLLQAPKYTGDELAELTSTCFKLNSLQLRALLLKYQPTPDEPRLPHEVIENVVRV 183 (410)
Q Consensus 112 gL~~aa~~~L~~L~QAa~LLq~~K~s~~Dl~~i~~~C~~LN~~QL~~LL~~Y~p~~~E~~Ip~e~i~~Vv~~ 183 (410)
|...+-. +|.++.|++..+|..++++++++.+.+.|.+||++|+.+|+..|+|.++|.++|.++...++..
T Consensus 1331 ~i~~~~~-~l~~l~q~~k~~~~~~~dl~~~~~~~~~~~~l~~~~~~~L~~~y~~~~~e~~l~ke~~~~~~a~ 1401 (1463)
T COG5022 1331 EISDVDE-ELEELIQAVKVLQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPKEILKKIEAL 1401 (1463)
T ss_pred cccchHH-HHHHHHhhhhhhhhhhCCHHHHHHHHHHHHhcCHHHHHHHHHhhhhhcccCCChHHHHHHHhhh
Confidence 9998877 4999999999999999999999999999999999999999999999999999999988666543
No 5
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=95.78 E-value=0.03 Score=56.47 Aligned_cols=126 Identities=10% Similarity=0.096 Sum_probs=70.5
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCcchhhhHHHHhhHHHHHHHHHHc---
Q psy2532 35 RGCRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKNRLAHIQMWAERQ--- 111 (410)
Q Consensus 35 ~~s~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~LL~~r~~~cs~s~GvqIr~NLs~LeeW~~~~--- 111 (410)
...+.+++..|+.++... ...+++.+..-++-..|.+|...+.+-|+.......+-.--.++...+..+|+++.+.
T Consensus 178 s~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~ 256 (311)
T PF04091_consen 178 SDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPVP 256 (311)
T ss_dssp -HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SSS
T ss_pred CHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 355789999999988654 5678999999999999999999999999875444444444678889999999999988
Q ss_pred --CCchHHHHhhHhHHHHHHhhhCCCCCHHHHH---HHHHhhhhcCHHHHHHHHhcCC
Q psy2532 112 --GLELAADCHLAKLMQAAHLLQAPKYTGDELA---ELTSTCFKLNSLQLRALLLKYQ 164 (410)
Q Consensus 112 --gL~~aa~~~L~~L~QAa~LLq~~K~s~~Dl~---~i~~~C~~LN~~QL~~LL~~Y~ 164 (410)
+-....+ .|..++|.++||..... +++. .-...-..+++..+..||.+|+
T Consensus 257 ~~~~~~L~~-~F~eLrQlvdLl~s~~~--~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 257 GNNIPSLRE-TFAELRQLVDLLLSDDW--EEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp S--SSTTGG-GGHHHHHHHHHHH-----------------------------------
T ss_pred ccccccHHH-HHHHHHHHHHHHhcCCH--HHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 4444445 49999999999997653 2332 1123345678888888887764
No 6
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=91.31 E-value=1.1 Score=47.69 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=74.2
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCcchhhhHHHHhhHHHHHHHHHHcCCch
Q psy2532 36 GCRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKNRLAHIQMWAERQGLEL 115 (410)
Q Consensus 36 ~s~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~LL~~r~~~cs~s~GvqIr~NLs~LeeW~~~~gL~~ 115 (410)
+.....+..|...+..|+.+ +++.....+..++..-|+..+|+.++. +. -.+..-|.|++.=+..|......- ..
T Consensus 355 ~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~-~n-~Fs~~Ga~Ql~~D~~~L~~~~~~~--~~ 429 (494)
T PF04437_consen 355 PELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILM-SN-KFSRAGAAQLQFDMRALFSVFSQY--TP 429 (494)
T ss_dssp GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTT-TS--B-HHHHHHHHHHHHHHHTTS--T--TS
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhh-cC-eeChhHHHHHHHHHHHHHHHHHhh--cc
Confidence 55678899999999999999 999999999999999999999999998 33 455555889888776665544441 12
Q ss_pred HHHHhhHhHHHHHHhhhCCCCCHHH
Q psy2532 116 AADCHLAKLMQAAHLLQAPKYTGDE 140 (410)
Q Consensus 116 aa~~~L~~L~QAa~LLq~~K~s~~D 140 (410)
..+.++.++.+++.||.++..+..+
T Consensus 430 ~p~~~f~~l~E~~~LL~L~~~~~~~ 454 (494)
T PF04437_consen 430 RPEAFFKRLREACKLLNLPYGSAKL 454 (494)
T ss_dssp GG-HHHHHHHHHHHHHGGGG-CGG-
T ss_pred CHHHHHHHHHHHHHHcCCCCcchhh
Confidence 2234799999999999998865443
No 7
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=68.33 E-value=49 Score=37.07 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=79.7
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHHHHhc-CCCCcchhhhHHHHhhHHHHHHHHHHcCC
Q psy2532 35 RGCRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVAN-NSIYCSKAWGVRIKNRLAHIQMWAERQGL 113 (410)
Q Consensus 35 ~~s~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~LL~~-r~~~cs~s~GvqIr~NLs~LeeW~~~~gL 113 (410)
.+.-..++.+|...+.+++.+- ..+.......-|+..+|+.|+.. .+-..+..=|+++..=|....+++.+.+.
T Consensus 577 T~ac~~vv~~L~~~~~~~~~~l-----~~~nl~~f~~elg~~l~~~l~~h~kk~~vs~~Gg~~l~~Dl~~Y~~~~~~~~~ 651 (710)
T PF07393_consen 577 TPACQEVVEFLERHCSLLKGSL-----DGSNLDVFLQELGERLHRLLLKHLKKFTVSSTGGLQLIKDLNEYQDFIRSWGI 651 (710)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc-----cchhHHHHHHHHHHHHHHHHHHHHHhCccCchhHHHHHHHHHHHHHHHHHcCC
Confidence 3445889999999999987753 23445555666777778877763 33334556699999999999999999999
Q ss_pred chHHHHhhHhHHHHHHhhhCCCCCHHHHHHHHHh
Q psy2532 114 ELAADCHLAKLMQAAHLLQAPKYTGDELAELTST 147 (410)
Q Consensus 114 ~~aa~~~L~~L~QAa~LLq~~K~s~~Dl~~i~~~ 147 (410)
+...+ .|..|.+.++|+.++. +++.+++..
T Consensus 652 ~~v~~-~F~~L~~l~nl~~v~~---~~l~~~~~~ 681 (710)
T PF07393_consen 652 PSVDE-KFEALKELGNLFIVDP---ENLKELCRE 681 (710)
T ss_pred chHHH-HHHHHHHHHhheeecH---HHHHHHHhh
Confidence 88766 6999999999999965 677777644
No 8
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=62.83 E-value=81 Score=33.97 Aligned_cols=143 Identities=13% Similarity=0.131 Sum_probs=93.8
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCc-----chhhhHHHHhhHHHHHHHHHH
Q psy2532 36 GCRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYC-----SKAWGVRIKNRLAHIQMWAER 110 (410)
Q Consensus 36 ~s~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~LL~~r~~~c-----s~s~GvqIr~NLs~LeeW~~~ 110 (410)
..+..|+..+...+.-++. ++++.+...++..+...+=..-+..|+. ++--| .-.-+-+|+.....|.+-+.+
T Consensus 397 ~~~~~I~~Ti~dY~~d~~~-~l~~~~~~~l~~~~~~~~v~~Yl~~l~~-kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~ 474 (566)
T PF06046_consen 397 EAVDTICATIEDYLQDFQH-YLRPPYFQELIEELHDRVVKEYLRALMK-KKIKFKNKEERKEAAERIRRDAEQLKSFFSK 474 (566)
T ss_dssp -HHHHHHHHHHHHHHHHCC-CS-HHHHHHHHHHHHHHHHHHHHHGGGG----------CCCCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHH-hhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888877766 6889999999999998888888888888 44434 223499999999999999999
Q ss_pred cCCchHHHHhhHhHHHHHHhhhCCCCC--HHHHHHHHHhhhhcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhh
Q psy2532 111 QGLELAADCHLAKLMQAAHLLQAPKYT--GDELAELTSTCFKLNSLQLRALLLKYQPTPDEPRLPHEVIENVVRVAEN 186 (410)
Q Consensus 111 ~gL~~aa~~~L~~L~QAa~LLq~~K~s--~~Dl~~i~~~C~~LN~~QL~~LL~~Y~p~~~E~~Ip~e~i~~Vv~~ae~ 186 (410)
.+-.......+..|...+.+|.+...+ ..++..+....+.++.-+|.+||..= +-++..-...+......
T Consensus 475 ~~~~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~~ypD~~~~~v~alL~~R------~D~~r~~~~~il~~~~~ 546 (566)
T PF06046_consen 475 LGSKSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQKYPDISEEHVEALLALR------GDLSRSEVKEILEILRE 546 (566)
T ss_dssp HTHHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHCC-TT--SHHHHHHHCT-------TT--HHHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc------cCCCHHHHHHHHHHHHH
Confidence 885444455688888888888333322 23445556667778888888888542 23666666655544443
No 9
>PF14964 DUF4507: Domain of unknown function (DUF4507)
Probab=46.49 E-value=3.7e+02 Score=28.20 Aligned_cols=174 Identities=16% Similarity=0.187 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhH-------HHHHHHHhcCCCCcchhhhHHHHhhHHHHHHHHHHcCCch
Q psy2532 43 GVLMSAMALLRGCRLNAALTIQLFSKLFHFLNV-------WAFNRLVANNSIYCSKAWGVRIKNRLAHIQMWAERQGLEL 115 (410)
Q Consensus 43 ~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa-------~lFN~LL~~r~~~cs~s~GvqIr~NLs~LeeW~~~~gL~~ 115 (410)
+.+....+-++.. .++++...+|.-||---.. .+..+|++ ..-+.....=|+..--|.++.|-+.
T Consensus 72 QLleiL~~yF~~~-~~d~~r~~iF~~LF~~~~~~~~~~R~~lL~kLVS-------~AIa~~~~~VL~~a~~Wmqq~g~~s 143 (362)
T PF14964_consen 72 QLLEILCDYFQEQ-SDDAVRYAIFDSLFGGQGDDADESRMSLLSKLVS-------MAIALPCVPVLNCAATWMQQLGCSS 143 (362)
T ss_pred HHHHHHHHHHccc-CCHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHH-------HHHhcccHHHHHHHHHHHHHcCCCc
Confidence 3333334444444 7888888888888854433 33444443 3333444445667778999977643
Q ss_pred HHHHhhHhHHHHHHhhhCCCCCHHHHHHHHHhhhhcCHHHHHHHHhcCCC---CCCCCCCCHHHHHHHHHhhhhhhhhhh
Q psy2532 116 AADCHLAKLMQAAHLLQAPKYTGDELAELTSTCFKLNSLQLRALLLKYQP---TPDEPRLPHEVIENVVRVAENLADELA 192 (410)
Q Consensus 116 aa~~~L~~L~QAa~LLq~~K~s~~Dl~~i~~~C~~LN~~QL~~LL~~Y~p---~~~E~~Ip~e~i~~Vv~~ae~~~Da~~ 192 (410)
....+|..-+ +-........+.+.+..+...|+.....=|-++-..|.- ..++...|...++-|+.+.-+++.-.
T Consensus 144 ~~s~~La~~i-v~dy~~l~p~~~~~L~~l~~~sP~F~a~fitavt~ly~~~~~~~~~~~PP~~LLevI~~Wi~~nP~lc- 221 (362)
T PF14964_consen 144 SYSLRLAQMI-VEDYCCLSPGSQETLKQLPNVSPRFCANFITAVTSLYDNPQRSSYEKPPPPSLLEVITEWISENPRLC- 221 (362)
T ss_pred HHHHHHHHHH-HHHHhccCCccHHHHHHhhccChHHHHHHHHHHHHHccCcccccccCCCCHHHHHHHHHHHhCCcHHH-
Confidence 3222222211 112233334577889999999998877666677777865 34567888999999998887766632
Q ss_pred hhCCCcccccccccCCCCcccCCCCcccccccCCChhHHHh--hhHHh
Q psy2532 193 RSDGRDVCLEEESELLLPFLLPDDGYSCEVVRGVPQGLIEF--ISPLQ 238 (410)
Q Consensus 193 ~~dG~~i~l~Es~dl~~P~lLP~dGy~~dl~~~vp~~l~~F--L~pL~ 238 (410)
-++-.. |..||.+++..-...+ -.||.++ +.||.
T Consensus 222 ----------~t~~~~-~~~LP~g~i~~~~~tp-l~GLlrWcvlaPL~ 257 (362)
T PF14964_consen 222 ----------LTFLNT-PLALPSGAIPMPPITP-LAGLLRWCVLAPLV 257 (362)
T ss_pred ----------Hhhccc-cccCCCcccCccCCCc-hhhHHHHHHhcccc
Confidence 222222 6788887665322121 2377776 46664
No 10
>KOG4112|consensus
Probab=25.25 E-value=1.6e+02 Score=25.37 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=31.9
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHhh
Q psy2532 364 PELIPTERAHRLTLVLVRVAAMIHNVIEMLLMSIVFCFR 402 (410)
Q Consensus 364 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
|..--+||+.+++.++.-++..+.+-.|+.++-.+|...
T Consensus 19 ~gQkkaEr~~q~ilti~aiVg~i~Gf~~Qqls~tvy~vg 57 (101)
T KOG4112|consen 19 PGQKKAERFQQLILTIGAIVGFIYGFAQQQLSVTVYIVG 57 (101)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444558999999999999999999999987776666543
No 11
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=24.90 E-value=54 Score=24.54 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHcCCchHHHHhhHhHHHHHHhhhCCCCCHHHHHHH
Q psy2532 100 RLAHIQMWAERQGLELAADCHLAKLMQAAHLLQAPKYTGDELAEL 144 (410)
Q Consensus 100 NLs~LeeW~~~~gL~~aa~~~L~~L~QAa~LLq~~K~s~~Dl~~i 144 (410)
+...+.+|+++.|++.-++.|-...+....|+.+.. +|+.++
T Consensus 4 ~~~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~---~dL~~l 45 (64)
T PF00536_consen 4 SVEDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTE---EDLEEL 45 (64)
T ss_dssp SHHHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCH---HHHHHT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCH---HHHHHc
Confidence 457899999999998877764445445555666554 565543
No 12
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=24.55 E-value=6.6e+02 Score=24.43 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHhhhHHHHHHH
Q psy2532 38 RLNVLGVLMSAMALL----RGCRLNAALTIQLFSKLFHFLNVWAFNRL 81 (410)
Q Consensus 38 ~~~vl~vL~~~l~lL----r~~~V~p~L~~QlFsQLF~fINa~lFN~L 81 (410)
++.+++.+..+...| +.-.+++++...++.++.++++..+....
T Consensus 94 Vd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~ 141 (234)
T PF10474_consen 94 VDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGY 141 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777 88999999999999999998876664433
No 13
>KOG0412|consensus
Probab=22.38 E-value=8.1e+02 Score=28.18 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=49.4
Q ss_pred cchhh--hHHHHhhHHHHHHHHHHcCCchHHHHhhHhHHHHHHhhhCCCCCHHHHHHHH----HhhhhcCHHHHHHHHhc
Q psy2532 89 CSKAW--GVRIKNRLAHIQMWAERQGLELAADCHLAKLMQAAHLLQAPKYTGDELAELT----STCFKLNSLQLRALLLK 162 (410)
Q Consensus 89 cs~s~--GvqIr~NLs~LeeW~~~~gL~~aa~~~L~~L~QAa~LLq~~K~s~~Dl~~i~----~~C~~LN~~QL~~LL~~ 162 (410)
|.|.. |+|+..-++.|-....+..=-.+.+ -|.+|.|.+-||...|-+ +.++.-. ..-+.|||..++++|..
T Consensus 690 ~~FNrlG~lqLDre~r~lis~lt~~t~~~lRd-Kf~RLtQIatLLnle~~s-e~le~w~~~~g~~twrLt~~EVr~vl~l 767 (773)
T KOG0412|consen 690 IQFNRLGGLQLDRELRALISYLTGVTQWNLRD-KFARLTQIATLLNLEKDS-EILEYWGPNSGPLTWRLTPAEVRKVLAL 767 (773)
T ss_pred hHHHhhcchHhhHHHHHHHHHhhcccchhHHH-HHHHHHHHHHHHcccccc-hHHHhcCCCCCCceEEeCHHHHHHHHHh
Confidence 66666 8888888888887776432222445 499999999999999843 3333221 12346999999988864
Done!