Query psy2532
Match_columns 410
No_of_seqs 184 out of 417
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:37:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f6h_X Myosin-2, type V myosin 100.0 3.1E-42 1E-46 353.3 22.8 191 34-228 200-400 (419)
2 3mmi_A Myosin-4; globular tail 100.0 2.7E-38 9.3E-43 319.4 16.8 154 34-190 184-338 (386)
3 2f6h_X Myosin-2, type V myosin 95.7 0.0061 2.1E-07 62.3 3.8 83 316-407 12-107 (419)
4 2a2f_X Exocyst complex compone 90.0 1.2 4E-05 44.1 9.4 112 16-135 205-320 (325)
5 2fji_1 Exocyst complex compone 80.4 48 0.0016 32.8 15.8 139 37-184 219-366 (399)
6 3zed_D Capsid protein VP3; vir 58.0 79 0.0027 29.6 10.5 141 32-184 24-183 (242)
7 3hr0_A COG4; conserved oligome 52.4 1.5E+02 0.0052 27.9 12.0 121 35-162 124-249 (263)
8 2ast_A S-phase kinase-associat 41.0 27 0.00093 30.2 4.4 40 120-161 98-139 (159)
9 2dkz_A Hypothetical protein LO 35.2 25 0.00085 28.2 2.9 57 99-162 18-75 (84)
10 1fs1_B SKP1, cyclin A/CDK2-ass 34.9 37 0.0013 28.9 4.2 55 102-161 77-134 (141)
11 3fhn_A Protein transport prote 26.8 1.1E+02 0.0039 33.1 7.1 93 38-135 565-658 (706)
No 1
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-42 Score=353.32 Aligned_cols=191 Identities=23% Similarity=0.399 Sum_probs=177.2
Q ss_pred cccCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCcchhhhHHHHhhHHHHHHHHHHcCC
Q psy2532 34 LRGCRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKNRLAHIQMWAERQGL 113 (410)
Q Consensus 34 ~~~s~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~LL~~r~~~cs~s~GvqIr~NLs~LeeW~~~~gL 113 (410)
..++|++|+++|++++++|+.|+|||.+++|+|+|+|||||+++||+||. |+++|+|++|+|||+||+.||+||+++|+
T Consensus 200 ~~~~~~~Il~~L~~~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~-r~~~cs~s~G~qIr~nls~Le~W~~~~~l 278 (419)
T 2f6h_X 200 EEYTMDDILTFFNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIM-KRNFLSWKRGLQLNYNVTRLEEWCKTHGL 278 (419)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHT-CSSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhc-cCcccchhhHHHHHhhHHHHHHHHHHcCC
Confidence 35789999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred chHHHHhhHhHHHHHHhhhCCCCCHHHHHHHHHhhhhcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q psy2532 114 ELAADCHLAKLMQAAHLLQAPKYTGDELAELTSTCFKLNSLQLRALLLKYQPTPDEPRLPHEVIENVVRVAENLADELAR 193 (410)
Q Consensus 114 ~~aa~~~L~~L~QAa~LLq~~K~s~~Dl~~i~~~C~~LN~~QL~~LL~~Y~p~~~E~~Ip~e~i~~Vv~~ae~~~Da~~~ 193 (410)
+.++++ |+|++||++|||++|++.+|++.+++.|++||++||+|||++|+|+++|++||++++++|+...++..|. .
T Consensus 279 ~~a~~~-L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~~Y~~d~~e~~v~~~~i~~v~~~~~~~~~~--~ 355 (419)
T 2f6h_X 279 TDGTEC-LQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQYQVADYESPIPQEILRYVADIVKKEAAL--S 355 (419)
T ss_dssp TTHHHH-THHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHCCCCTTSCCCCHHHHHHHHHHHHHHHHG--G
T ss_pred hhHHHH-HHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHHhCCCccCCCCCCHHHHHHHHHHHhccccc--c
Confidence 999885 9999999999999999999999999999999999999999999999999999999999999988877665 3
Q ss_pred hCCCc----------ccccccccCCCCcccCCCCcccccccCCCh
Q psy2532 194 SDGRD----------VCLEEESELLLPFLLPDDGYSCEVVRGVPQ 228 (410)
Q Consensus 194 ~dG~~----------i~l~Es~dl~~P~lLP~dGy~~dl~~~vp~ 228 (410)
.||++ .-+.|+.++..||.+|++|+.+++.++||+
T Consensus 356 ~~~~~~~~~~~~~~~~ll~~d~~~~~Pf~~p~~~~~~~i~~~iP~ 400 (419)
T 2f6h_X 356 SSGNDSKGHEHSSSIFITPETGPFTDPFSLIKTRKFDQVEAYIPA 400 (419)
T ss_dssp GCC----------CCSCCCCCCCCCCGGGGSCCCCCCCCCCCCCT
T ss_pred cccccccccccccccccccCCcccCCCcCCCCcCcHHHHHhhCCC
Confidence 45652 344568888899999999999999999997
No 2
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-38 Score=319.41 Aligned_cols=154 Identities=22% Similarity=0.348 Sum_probs=144.1
Q ss_pred cccCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCcchhhhHHHHhhHHHHHHHHHHcCC
Q psy2532 34 LRGCRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKNRLAHIQMWAERQGL 113 (410)
Q Consensus 34 ~~~s~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~LL~~r~~~cs~s~GvqIr~NLs~LeeW~~~~gL 113 (410)
..++|++|+++|++++.+|+.|+|||++++|+|+|||||||+++||+||. |+++|+|++|+|||+||++||+||++ |+
T Consensus 184 ~~~s~~~Il~~L~~~~~~L~~~~V~p~li~QlfsQLF~fIna~lFN~LLl-Rr~~cs~s~G~qIr~NLs~LEeW~~~-~l 261 (386)
T 3mmi_A 184 GDEKFAKLFTFLNEFDAVLCKFQVVDSMHTKIFNDTLKYLNVMLFNDLIT-KCPALNWKYGYEVDRNIERLVSWFEP-RI 261 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCBCHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred CccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHc-cCcccCcchHHHHHhhHHHHHHHHHh-cc
Confidence 45679999999999999999999999999999999999999999999999 89999999999999999999999999 99
Q ss_pred chHHHHhhHhHHHHHHhhhCCCCCHHHHHHHHHhhhhcCHHHHHHHHhcCCCCCC-CCCCCHHHHHHHHHhhhhhhhh
Q psy2532 114 ELAADCHLAKLMQAAHLLQAPKYTGDELAELTSTCFKLNSLQLRALLLKYQPTPD-EPRLPHEVIENVVRVAENLADE 190 (410)
Q Consensus 114 ~~aa~~~L~~L~QAa~LLq~~K~s~~Dl~~i~~~C~~LN~~QL~~LL~~Y~p~~~-E~~Ip~e~i~~Vv~~ae~~~Da 190 (410)
+.+++ ||+|++||++|||++|++.+|++.+++.|++||++||++||++|+|+++ |++||++++++|+...++..+.
T Consensus 262 ~~a~~-~L~~L~QA~~LLQ~~K~t~~Di~~i~~~C~~Lsp~QL~kIL~~Y~p~~~~E~~V~~e~i~~v~~~lk~~~~~ 338 (386)
T 3mmi_A 262 EDVRP-NLIQIIQAVKILQLKISNLNEFKLLFDFWYALNPAQIQAILLKYKPANKGEAGVPNEILNYLANVIKRENLS 338 (386)
T ss_dssp SCCGG-GGHHHHHHHHHHHCCCCCHHHHHHHHTTCCSSCHHHHHHHHHTBCCC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHccCCCCHHHHHHHHHhcccCCHHHHHHHHHhCcCCCCCCCCCCHHHHHHHHHHHhccccc
Confidence 99988 7999999999999999999999999999999999999999999999988 9999999999999888777664
No 3
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.0061 Score=62.32 Aligned_cols=83 Identities=23% Similarity=0.256 Sum_probs=60.4
Q ss_pred eeeehhhhHHHHHHHHHhccC--CC------CCceecchhHHHHHHHHhhcccCCCCCCChhhhhHHHHHHHHHHHHHHH
Q psy2532 316 VLEIREETEEAFLHALITDLE--PS------APSFKLAPAYTLYLAARYRASTHYRPELIPTERAHRLTLVLVRVAAMIH 387 (410)
Q Consensus 316 ~~~~~~~~~~~~~~~~i~~~~--~~------~~~fkl~p~y~ly~~~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 387 (410)
.||..++.+|..+..+|...+ .. +-+.||.|+|++|||.|+ ++|.+. .++...++.+++++|+
T Consensus 12 ll~~~~~~~~ei~~~l~~~~~ip~~~~~~~~~~~~~l~PA~il~~cl~~----~~~~~~-----~~~~~~ll~~ii~~I~ 82 (419)
T 2f6h_X 12 LLEDTEILNQEITEGLLKGFEVPDAGVAIQLSKRDVVYPARILIIVLSE----MWRFGL-----TKQSESFLAQVLTTIQ 82 (419)
T ss_dssp HHHCHHHHHHHHHHTTTTTCCCCCCSTTCCCCHHHHSHHHHHHHHHHHH----HHHTTC-----HHHHHHHHHHHHHHHH
T ss_pred HHhhhhhccHHHHHHHHHHccCCCCccccCCCCCCcchHHHHHHHHHHH----HHhhcc-----hHHHHHHHHHHHHHHH
Confidence 355566677777777776555 22 345799999999999993 234432 2367799999999999
Q ss_pred HHHHhh-----hhhhHHHhhhhhhc
Q psy2532 388 NVIEML-----LMSIVFCFRIVTVM 407 (410)
Q Consensus 388 ~~~~~~-----~~~~~~~~~~~~~~ 407 (410)
.+|++. ...++||++=..+.
T Consensus 83 ~~v~~~~~~d~i~~lafWLSN~~~L 107 (419)
T 2f6h_X 83 KVVTQLKGNDLIPSGVFWLANVREL 107 (419)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcchhhhhHHHHHHHHH
Confidence 999873 35699999866554
No 4
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=90.01 E-value=1.2 Score=44.06 Aligned_cols=112 Identities=11% Similarity=0.001 Sum_probs=78.9
Q ss_pred CCcccchhhhhhhhHhhhcccCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCcchhhhH
Q psy2532 16 DDVSTSSVLGVLMSAMALLRGCRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYCSKAWGV 95 (410)
Q Consensus 16 ~~~~~~~~~~~~~sa~~~~~~s~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~LL~~r~~~cs~s~Gv 95 (410)
+-+|..++.. ..-..-+.+++..|..++.. ...+++.+..-++...|.+|+..+.+-|+...-+..+-.-=.
T Consensus 205 ~yDW~~~~~~------~~ps~yi~dli~fL~~~f~s--l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~ 276 (325)
T 2a2f_X 205 AYDWLLVEPP------GIASAFITDMISYLKSTFDS--FAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALT 276 (325)
T ss_dssp CTTCC----C------CSCCHHHHHHHHHHHHHHHT--TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHH
T ss_pred ccCCCCCCCC------CCccHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHH
Confidence 3456666543 11334589999999999994 679999999999999999999999998875323444444456
Q ss_pred HHHhhHHHHHHHHHH---cCCch-HHHHhhHhHHHHHHhhhCCC
Q psy2532 96 RIKNRLAHIQMWAER---QGLEL-AADCHLAKLMQAAHLLQAPK 135 (410)
Q Consensus 96 qIr~NLs~LeeW~~~---~gL~~-aa~~~L~~L~QAa~LLq~~K 135 (410)
++...+..+|+.+.+ .|+.. .....|..++|.++||+...
T Consensus 277 ~~~~Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~Ll~~~~ 320 (325)
T 2a2f_X 277 QINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLILEH 320 (325)
T ss_dssp HHHHHHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 788889999999988 44432 22335999999999998653
No 5
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=80.43 E-value=48 Score=32.82 Aligned_cols=139 Identities=8% Similarity=-0.001 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCc--chhhhHHHHhhHHHHHHHHHHcCCc
Q psy2532 37 CRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYC--SKAWGVRIKNRLAHIQMWAERQGLE 114 (410)
Q Consensus 37 s~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~LL~~r~~~c--s~s~GvqIr~NLs~LeeW~~~~gL~ 114 (410)
.++.++..+...+.-++ .++++.+..-++..+...+-...++.|+. +..+- .-.-|-+|+.....|.+-+.+.+-.
T Consensus 219 ~v~~i~~ti~dy~~d~~-~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~ 296 (399)
T 2fji_1 219 QAQQIADTLDEYLLDIK-PQMNSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDG 296 (399)
T ss_dssp HHHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35788888888887775 46999999999999999999999999986 33322 2456999999999999999887754
Q ss_pred hH-----HHHhhHhHHHHHHhhhCCC-CC-HHHHHHHHHhhhhcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhh
Q psy2532 115 LA-----ADCHLAKLMQAAHLLQAPK-YT-GDELAELTSTCFKLNSLQLRALLLKYQPTPDEPRLPHEVIENVVRVA 184 (410)
Q Consensus 115 ~a-----a~~~L~~L~QAa~LLq~~K-~s-~~Dl~~i~~~C~~LN~~QL~~LL~~Y~p~~~E~~Ip~e~i~~Vv~~a 184 (410)
.. .+..+..|.+.+. |.+++ .. ...+.......+.+++..+.+||.. +- -++.+-++.+....
T Consensus 297 ~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~-R~-----D~~~~~~k~ll~~~ 366 (399)
T 2fji_1 297 NESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKC-RK-----DVSSSERKKIVQQA 366 (399)
T ss_dssp CTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTT-CT-----TCCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHh-cc-----CCCHHHHHHHHHHH
Confidence 32 3446899999999 88766 32 2233344556678999999999963 22 36666555554444
No 6
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=58.00 E-value=79 Score=29.59 Aligned_cols=141 Identities=14% Similarity=0.137 Sum_probs=91.0
Q ss_pred hhcccCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHHHHhc---------C--CCCcchhhhHHHHhh
Q psy2532 32 ALLRGCRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVAN---------N--SIYCSKAWGVRIKNR 100 (410)
Q Consensus 32 ~~~~~s~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~LL~~---------r--~~~cs~s~GvqIr~N 100 (410)
+...+.+.++|++++.+.. .-|+.-++.-.-.--++.=|++++.. + ..-..|.++++|+.|
T Consensus 24 ~~kDp~~~KlL~v~~W~~k--------nGl~D~mynfs~~Dp~g~Km~r~ist~P~~a~kp~GPtq~~AQ~~KAvRIS~d 95 (242)
T 3zed_D 24 EVKDAEVFKLLKLMSWTRK--------NDLTDHMYEWSKEDPDAIKFGRLVSTPPKHQEKPKGPDQHTAQEAKATRISLD 95 (242)
T ss_pred hccCHHHHHHHHHHHHHhc--------cCHHHHHHHHHhhCccHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 4466777888887776655 34555555555555688999999973 1 112467778888888
Q ss_pred HHHH------HHHHHHcCCch-HHHHhhHhHHHHHHhhhCCCCCHHHHHHHHHhhhhc-CHHHHHHHHhcCCCCCCCCCC
Q psy2532 101 LAHI------QMWAERQGLEL-AADCHLAKLMQAAHLLQAPKYTGDELAELTSTCFKL-NSLQLRALLLKYQPTPDEPRL 172 (410)
Q Consensus 101 Ls~L------eeW~~~~gL~~-aa~~~L~~L~QAa~LLq~~K~s~~Dl~~i~~~C~~L-N~~QL~~LL~~Y~p~~~E~~I 172 (410)
.-.- -||+..+|..- ...+ | +-.++..++=-+-....| -+...-.+. ..-++++|+...--.++..+-
T Consensus 96 ~~~~g~dfaTpEWV~~NGyRGPsp~Q-~-KYy~itg~~P~Pge~y~d--yv~~~~~~p~~~~kirRla~svyg~p~Q~pa 171 (242)
T 3zed_D 96 AVKAGADFASPEWIAENNYRGPSPGQ-F-KYYMITGRVPNPGEEYED--YVRKPITRPTDMDKIRRLANSVYGLPHQEPA 171 (242)
T ss_pred HHHhccccCChHHHHhcCCCCCCHHH-h-hHHHhcccCCCCCccHHH--hhccccCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 7542 58999999842 3332 4 345566666555532222 223333445 778999999986556677789
Q ss_pred CHHHHHHHHHhh
Q psy2532 173 PHEVIENVVRVA 184 (410)
Q Consensus 173 p~e~i~~Vv~~a 184 (410)
|.++++.|..+.
T Consensus 172 peef~~ava~v~ 183 (242)
T 3zed_D 172 PDDFYQAVVEVF 183 (242)
T ss_pred CHHHHHHHHHHH
Confidence 999999776644
No 7
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=52.41 E-value=1.5e+02 Score=27.95 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=84.6
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCcchhhhHHHHhhHHHHHHHHHHcCCc
Q psy2532 35 RGCRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKNRLAHIQMWAERQGLE 114 (410)
Q Consensus 35 ~~s~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~LL~~r~~~cs~s~GvqIr~NLs~LeeW~~~~gL~ 114 (410)
.|-+...+..++..+.-.+.. +++..-..+++.+..++...+=..++. .-++.-=|+|+-.-++.|-.++.+.+--
T Consensus 124 d~~~~~F~~~w~~ll~p~k~~-Lt~~~y~~Ll~~~~~~la~~lE~~i~~---~~fn~lGal~LdrDvr~li~~~~~~~~~ 199 (263)
T 3hr0_A 124 DPWVQQFILNLEQQMAEFKAS-LSPVIYDSLTGLMTSLVAVELEKVVLK---STFNRLGGLQFDKELRSLIAYLTTVTTW 199 (263)
T ss_dssp CCSHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred cHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHh---CCcCchhHHHHHHHHHHHHHHHHhccch
Confidence 355677777777777766653 346666667776666766666555554 3366666999999999999999775433
Q ss_pred hHHHHhhHhHHHHHHhhhCCCCCHHHHHHHH-----HhhhhcCHHHHHHHHhc
Q psy2532 115 LAADCHLAKLMQAAHLLQAPKYTGDELAELT-----STCFKLNSLQLRALLLK 162 (410)
Q Consensus 115 ~aa~~~L~~L~QAa~LLq~~K~s~~Dl~~i~-----~~C~~LN~~QL~~LL~~ 162 (410)
..-+ .|.++.|.+-+|.+.+ .+|+.... ..-+.|++..++++|..
T Consensus 200 ~lRe-kF~RL~QI~~lLnle~--~eev~d~~~~~~~~~~W~Ls~~E~r~il~l 249 (263)
T 3hr0_A 200 TIRD-KFARLSQMATILNLER--VTEILDYWGPNSGPLTWRLTPAEVRQVLAL 249 (263)
T ss_dssp THHH-HTHHHHHHHHHHTCSS--GGGGGGTSGGGGTTCCCCSCHHHHHHHHTT
T ss_pred hhhH-HHHHHHHHHHHHcCCC--hHHHHHHhcccCCCccccCCHHHHHHHHHh
Confidence 3445 5999999999999996 34443321 12358999999998874
No 8
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=40.97 E-value=27 Score=30.17 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=25.6
Q ss_pred hhHhHHHHHHhhhCCCCCHHHHH--HHHHhhhhcCHHHHHHHHh
Q psy2532 120 HLAKLMQAAHLLQAPKYTGDELA--ELTSTCFKLNSLQLRALLL 161 (410)
Q Consensus 120 ~L~~L~QAa~LLq~~K~s~~Dl~--~i~~~C~~LN~~QL~~LL~ 161 (410)
.+..|..||+.|+++. +-|+. .+...-..-|+.||++++.
T Consensus 98 ~l~eLl~AAnyL~I~~--Lld~~c~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 98 TLFELILAANYLDIKG--LLDVTCKTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp HHHHHHHHHHHHTCHH--HHHHHHHHHHHHHSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHH--HHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 5788999999999865 22222 1112222458999998765
No 9
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.17 E-value=25 Score=28.23 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHcCCch-HHHHhhHhHHHHHHhhhCCCCCHHHHHHHHHhhhhcCHHHHHHHHhc
Q psy2532 99 NRLAHIQMWAERQGLEL-AADCHLAKLMQAAHLLQAPKYTGDELAELTSTCFKLNSLQLRALLLK 162 (410)
Q Consensus 99 ~NLs~LeeW~~~~gL~~-aa~~~L~~L~QAa~LLq~~K~s~~Dl~~i~~~C~~LN~~QL~~LL~~ 162 (410)
.+++++-+|++-.||++ +++.|-+.=+-=.-|+++.+ + +...=+.||+.|.++|++-
T Consensus 18 lSv~EVs~~Lr~igL~e~vv~~F~~e~IDG~lL~~L~e---e----~L~edf~ls~Lq~kKi~~f 75 (84)
T 2dkz_A 18 LSIEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTE---E----ILSEDFKLSKLQVKKIMQF 75 (84)
T ss_dssp CCHHHHHHHGGGTCCCHHHHHHHHTTTCCHHHHHHCCH---H----HHHHTSCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCcHHHHHHHHHHccchHHHHhCCH---H----HHHhhcCCCHHHHHHHHHH
Confidence 36789999999999985 55654444333344566655 2 2333467899999998864
No 10
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=34.88 E-value=37 Score=28.85 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=28.6
Q ss_pred HHHHHHHHHc-CCchHHHHhhHhHHHHHHhhhCCCCCHHHHH--HHHHhhhhcCHHHHHHHHh
Q psy2532 102 AHIQMWAERQ-GLELAADCHLAKLMQAAHLLQAPKYTGDELA--ELTSTCFKLNSLQLRALLL 161 (410)
Q Consensus 102 s~LeeW~~~~-gL~~aa~~~L~~L~QAa~LLq~~K~s~~Dl~--~i~~~C~~LN~~QL~~LL~ 161 (410)
..+.+|=++. .+.. ..|-.|..||+.|+++. +-|+. .+...-..=|+.||++++.
T Consensus 77 ~~i~~wD~~F~~vd~---~~l~eLi~AAnyL~I~~--Lldl~c~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 77 DDIPVWDQEFLKVDQ---GTLFELILAANYLDIKG--LLDVTCKTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp ----HHHHHHTCSCH---HHHHHHHHHHHHHTCHH--HHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred hhhhHHHHHHHhCCH---HHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 3466675552 3322 24778899999999765 22222 1112222357888887654
No 11
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=26.79 E-value=1.1e+02 Score=33.15 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCcchhhhHHHHhhHHHHHHHHHHcCCchHH
Q psy2532 38 RLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKNRLAHIQMWAERQGLELAA 117 (410)
Q Consensus 38 ~~~vl~vL~~~l~lLr~~~V~p~L~~QlFsQLF~fINa~lFN~LL~~r~~~cs~s~GvqIr~NLs~LeeW~~~~gL~~aa 117 (410)
....+..|...+..|++.-+++.+..+++.++..-|+..+|+.++. + +-.+..-|.|+++=+..|..= -+++...
T Consensus 565 L~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~-~-nkFS~~Ga~Qf~~D~~~L~~v---~~lp~~~ 639 (706)
T 3fhn_A 565 LVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILK-L-NKFNQNGLNQFLHDFKSLSSI---LSLPSHA 639 (706)
T ss_dssp GHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTT-T-SCBCHHHHHHHHHHHHHHHTT---SCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh-c-CccCHHHHHHHHHHHHHHHHH---hcCCCcc
Confidence 5788999999999999999999999999999999999999999998 3 334555688998877775432 2344322
Q ss_pred -HHhhHhHHHHHHhhhCCC
Q psy2532 118 -DCHLAKLMQAAHLLQAPK 135 (410)
Q Consensus 118 -~~~L~~L~QAa~LLq~~K 135 (410)
...|.++.+++.||.++.
T Consensus 640 ~~~~~~~L~E~l~LL~L~~ 658 (706)
T 3fhn_A 640 TNYKCMSLHELVKILKLKY 658 (706)
T ss_dssp CCHHHHHHHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHcCCCC
Confidence 235899999999999987
Done!