RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2532
         (410 letters)



>gnl|CDD|216736 pfam01843, DIL, DIL domain.  The DIL domain has no known function.
          Length = 105

 Score =  115 bits (290), Expect = 2e-31
 Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 1/106 (0%)

Query: 64  QLFSKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKNRLAHIQMWAERQGLELAADCHLAK 123
           QLFS+LF+F+N   FN L+     +CS + G++I+  L+ ++ W    GLE AA  HL  
Sbjct: 1   QLFSQLFYFINAQLFNSLLLRRD-FCSWSRGLQIRYNLSLLEDWCRSAGLEEAAWEHLEP 59

Query: 124 LMQAAHLLQAPKYTGDELAELTSTCFKLNSLQLRALLLKYQPTPDE 169
           L QA +LLQ  K T +++  L   C  LN  Q+  LL  Y+P   E
Sbjct: 60  LRQAVNLLQIKKSTIEDIEILCDLCPALNPAQIHKLLTLYKPDDYE 105


>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
          Length = 1463

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 2/141 (1%)

Query: 41   VLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKNR 100
            +L +L S   LL   +L   +     + L  ++NV  FN L    S    K+    +   
Sbjct: 1261 LLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKS-ATEVNYN 1319

Query: 101  LAHIQMWAERQGLELAADCHLAKLMQAAHLLQAPKYTGDELAELTSTCFKLNSLQLRALL 160
               +  W     +    D  L +L+QA  +LQ  K   ++L EL   C+ LN  +++ L 
Sbjct: 1320 SEELDDWCREFEIS-DVDEELEELIQAVKVLQLLKDDLNKLDELLDACYSLNPAEIQNLK 1378

Query: 161  LKYQPTPDEPRLPHEVIENVV 181
             +Y P   E  LP E+++ + 
Sbjct: 1379 SRYDPADKENNLPKEILKKIE 1399


>gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha
           and beta subunits of the Mo storage protein (MosA and
           MosB) which are related to uridine monophosphate kinase
           (UMPK) enzymes that catalyze the phosphorylation of UMP
           by ATP, yielding UDP, and playing a key role in
           pyrimidine nucleotide biosynthesis. The Mo storage
           protein from the nitrogen-fixing bacterium, Azotobacter
           vinelandii, is characterized as an alpha4-beta4 octamer
           containing a polynuclear molybdenum-oxide cluster which
           is ATP-dependent to bind Mo and pH-dependent to release
           Mo. These and related bacterial sequences in this CD are
           members of the Amino Acid Kinase Superfamily (AAK).
          Length = 262

 Score = 30.4 bits (69), Expect = 1.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 286 REEPDIQVIKLHKSSTYERYTRGTDPILPAVLEIREETEEAFLHALI 332
           R  PD+ V+K+   S  +   RG + +LP V EI     E   H L+
Sbjct: 27  RLLPDLNVVKIGGQSIID---RGAEAVLPLVEEIVALRPE---HKLL 67


>gnl|CDD|218710 pfam05708, DUF830, Orthopoxvirus protein of unknown function
           (DUF830).  This family consists of several Orthopoxvirus
           proteins of unknown function.
          Length = 165

 Score = 28.9 bits (65), Expect = 3.6
 Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 5/41 (12%)

Query: 56  RLNAALTIQLFSKL----FHFLNVW-AFNRLVANNSIYCSK 91
           RL   LT     K        L     F     ++  YCSK
Sbjct: 71  RLKDGLTEAQMQKAADYALRRLGKPYDFGFNWDSDRQYCSK 111


>gnl|CDD|130524 TIGR01457, HAD-SF-IIA-hyp2, HAD-superfamily subfamily IIA
           hydrolase, TIGR01457.  This hypothetical equivalog is a
           member of the Class IIA subfamily of the haloacid
           dehalogenase superfamily of aspartate-nucleophile
           hydrolases. The sequences modelled by this equivalog are
           all gram positive (low-GC) bacteria. Sequences found in
           This model are annotated variously as related to NagD or
           4-nitrophenyl phosphatase, and this hypothetical
           equivalog, of all of those within the Class IIA
           subfamily, is most closely related to the E. coli NagD
           enzyme and the PGP_euk equivalog (TIGR01452). However,
           there is presently no evidence that this hypothetical
           equivalog has the same function of either those [Unknown
           function, Enzymes of unknown specificity].
          Length = 249

 Score = 29.1 bits (65), Expect = 3.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 278 RSAGYIANREEPDIQVIKLHKSSTYERYTRGT 309
           +  G     E PD  V+ L +S TYE++    
Sbjct: 99  KENGLTFGGENPDYVVVGLDRSITYEKFAVAC 130


>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
           Protein Tyrosine Kinases, Janus kinases 2 and 3.
           Protein Tyrosine Kinase (PTK) family; Janus kinase 2
           (Jak2) and Jak3; catalytic (c) domain (repeat 2). The
           PTKc family is part of a larger superfamily that
           includes the catalytic domains of other kinases such as
           protein serine/threonine kinases, RIO kinases, and
           phosphoinositide 3-kinase (PI3K). PTKs catalyze the
           transfer of the gamma-phosphoryl group from ATP to
           tyrosine (tyr) residues in protein substrates. Jak2 and
           Jak3 are members of the Janus kinase (Jak) subfamily of
           proteins, which are cytoplasmic (or nonreceptor) tyr
           kinases containing an N-terminal FERM domain, followed
           by a Src homology 2 (SH2) domain, a pseudokinase domain,
           and a C-terminal catalytic tyr kinase domain. Jaks are
           crucial for cytokine receptor signaling. They are
           activated by autophosphorylation upon cytokine-induced
           receptor aggregation, and subsequently trigger
           downstream signaling events such as the phosphorylation
           of signal transducers and activators of transcription
           (STATs). Jak2 is widely expressed in many tissues while
           Jak3 is expressed only in hematopoietic cells. Jak2 is
           essential for the signaling of hormone-like cytokines
           such as growth hormone, erythropoietin, thrombopoietin,
           and prolactin, as well as some IFNs and cytokines that
           signal through the IL-3 and gp130 receptors. Jak3 binds
           the shared receptor subunit common gamma chain and thus,
           is essential in the signaling of cytokines that use it
           such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
           Disruption of Jak2 in mice results in an embryonic
           lethal phenotype with multiple defects including
           erythropoietic and cardiac abnormalities. It is the only
           Jak gene that results in a lethal phenotype when
           disrupted in mice. A mutation in the pseudokinase domain
           of Jak2, V617F, is present in many myeloproliferative
           diseases, including almost all patients with
           polycythemia vera, and 50% of patients with essential
           thrombocytosis and myelofibrosis. Jak3 is important in
           lymphoid development and myeloid cell differentiation.
           Inactivating mutations in Jak3 have been reported in
           humans with severe combined immunodeficiency (SCID).
          Length = 284

 Score = 29.0 bits (65), Expect = 4.8
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 67  SKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKNRLAHIQMWAERQGLELAADCHLAKLMQ 126
           SK     +VW+F  ++     Y  K+             M  ++QG  +    HL +L++
Sbjct: 186 SKFSVASDVWSFGVVLYELFTYSDKS---CSPPAEFMRMMGNDKQGQMIV--YHLIELLK 240

Query: 127 AAHLLQAPKYTGDELAELTSTCFKLNSLQLR 157
               L AP     E+  +   C+  N    R
Sbjct: 241 NNGRLPAPPGCPAEIYAIMKECW-NNDPSQR 270


>gnl|CDD|190601 pfam03323, GerA, Bacillus/Clostridium GerA spore germination
           protein. 
          Length = 468

 Score = 28.9 bits (66), Expect = 5.1
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 349 TLYLAARYRASTHYRPELIPTERAHRLTLVLVRVAAMIHNVIEMLLMSIVF 399
           +L+L   Y A T + PELIPTE     ++   R       +IE L+M I F
Sbjct: 285 SLFLPPLYVALTTFHPELIPTELL--FSIAASREGVPFPPIIEALIMEITF 333


>gnl|CDD|216247 pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase. 
          Length = 495

 Score = 29.1 bits (66), Expect = 5.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 253 GYWTVYMGPHNSQGPVI 269
           G +TVY  P +S G V+
Sbjct: 218 GGYTVYEPPPSSGGAVL 234


>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed.
          Length = 344

 Score = 28.6 bits (65), Expect = 6.8
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 312 ILPAVLEIRE-ETEEAFLHALITDLE-PSAPSFKLAPAYTLYLAAR 355
            LP  +E  E  T E    A I D+    AP+  +A AY + LAAR
Sbjct: 20  KLPHEVEYVELTTAEEVADA-IRDMVVRGAPAIGIAAAYGMALAAR 64


>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
          Length = 474

 Score = 28.2 bits (63), Expect = 9.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 9/45 (20%)

Query: 16  DDVSTSSVLGVLM------SAMALLRGCRLNVLGVLMSAMALLRG 54
           D VST S +   M        M L+RG    V+G L++ +AL +G
Sbjct: 285 DAVSTGSSI---MPQKKNPDPMELVRGKSARVIGDLVTVLALCKG 326


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,031,539
Number of extensions: 2070378
Number of successful extensions: 1825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1821
Number of HSP's successfully gapped: 18
Length of query: 410
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 311
Effective length of database: 6,546,556
Effective search space: 2035978916
Effective search space used: 2035978916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)