RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2532
(410 letters)
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport,
vacuole binding, secreatory vescIle binding, structural
protein; 2.25A {Saccharomyces cerevisiae}
Length = 419
Score = 141 bits (357), Expect = 3e-38
Identities = 45/211 (21%), Positives = 89/211 (42%), Gaps = 11/211 (5%)
Query: 40 NVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKN 99
++L S ++ + + + + L ++++ FN L+ + + S G+++
Sbjct: 206 DILTFFNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRN-FLSWKRGLQLNY 264
Query: 100 RLAHIQMWAERQGLELAADCHLAKLMQAAHLLQAPKYTGDELAELTSTCFKLNSLQLRAL 159
+ ++ W + GL +C L L+Q A LLQ KYT +++ L C+ L QL+ L
Sbjct: 265 NVTRLEEWCKTHGLTDGTEC-LQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKL 323
Query: 160 LLKYQPTPDEPRLPHEVIENVVRVAENLADELARSDGRDVCLEEESELLLPFLLPDDGYS 219
+ +YQ E +P E++ V + + A S G D E S F+ P+ G
Sbjct: 324 ISQYQVADYESPIPQEILRYVADIVKKEAA--LSSSGNDSKGHEHSS--SIFITPETGPF 379
Query: 220 CEVVRGVPQGLIEFI-----SPLQAAGLCRL 245
+ + + + + L R+
Sbjct: 380 TDPFSLIKTRKFDQVEAYIPAWLSLPSTKRI 410
Score = 35.2 bits (80), Expect = 0.036
Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 17/92 (18%)
Query: 310 DPILPAVLEIREETEEAFLHALITDLE--------PSAPSFKLAPAYTLYLAARYRASTH 361
+ L +LE E + L+ E + + PA L +
Sbjct: 6 NEELYRLLEDTEILNQEITEGLLKGFEVPDAGVAIQLSKRDVVYPARILIIVLSEMWRFG 65
Query: 362 YRPELIPTERAHRLTLVLVRVAAMIHNVIEML 393
+ L +V I V+ L
Sbjct: 66 LTKQ---------SESFLAQVLTTIQKVVTQL 88
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A
{Saccharomyces cerevisiae}
Length = 386
Score = 135 bits (340), Expect = 4e-36
Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 6/168 (3%)
Query: 40 NVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSIYCSKAWGVRIKN 99
+ L A+L ++ ++ ++F+ +LNV FN L+ + +G +
Sbjct: 190 KLFTFLNEFDAVLCKFQVVDSMHTKIFNDTLKYLNVMLFNDLITKCP-ALNWKYGYEVDR 248
Query: 100 RLAHIQMWAERQGLELAADCHLAKLMQAAHLLQAPKYTGDELAELTSTCFKLNSLQLRAL 159
+ + W E + + +L +++QA +LQ +E L + LN Q++A+
Sbjct: 249 NIERLVSWFEPRIED--VRPNLIQIIQAVKILQLKISNLNEFKLLFDFWYALNPAQIQAI 306
Query: 160 LLKYQPT-PDEPRLPHEVIENVVRVAENLADELARSDGRDVCLEEESE 206
LLKY+P E +P+E++ + V + + L+ ++ L + +
Sbjct: 307 LLKYKPANKGEAGVPNEILNYLANVIKR--ENLSLPGKMEIMLSAQFD 352
Score = 47.1 bits (111), Expect = 5e-06
Identities = 7/86 (8%), Positives = 23/86 (26%), Gaps = 11/86 (12%)
Query: 310 DPILPAVLEIREETEEAFLHALITDLEPSAPSFK--LAPAYTLYLAARYRASTHYRPELI 367
+P L +L + + + + L P + + +
Sbjct: 16 NPDLLELLMDLNCYTLEVTEGYLKKVNVTEVNGDNVLGPIHVITTVVSSLVRNGLLIQ-- 73
Query: 368 PTERAHRLTLVLVRVAAMIHNVIEML 393
+ + +V + +++ L
Sbjct: 74 -------SSKFISKVLLTVESIVMSL 92
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 7e-09
Identities = 52/386 (13%), Positives = 109/386 (28%), Gaps = 97/386 (25%)
Query: 16 DDVSTSSVLGVLMSAMALLRGCRL-------NVLGVLMSAMA-------LLRGCRLNAAL 61
+V + +A L C++ V L +A L
Sbjct: 251 LNVQNAKAW----NAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPDE 302
Query: 62 TIQLFSKLFHFLNVWAFNRL----VANNSIYCSKAWGVRIKNRLAHIQMWAERQGLELAA 117
L K +L+ L + N S I++ LA W
Sbjct: 303 VKSLLLK---YLDC-RPQDLPREVLTTNPRRLSII-AESIRDGLATWDNW---------- 347
Query: 118 DCHLAKLMQAAHLLQAPKYTGDELAELTSTCFK-LNSLQLRALLLKYQPTPDEPRLPHEV 176
D+L + + L + R + + P +P +
Sbjct: 348 ----------------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 177 I-----ENVVRVAENLADELARSDGRDVCLEE---ESELLLPFLLPDDGYSCEVVRGVPQ 228
+ + + + ++L + +E+ ES + +P + + E + +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYS----LVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 229 GLIEFISPLQAAGLCRLSAQPTSNGYWTVYMGPHNSQGPVIRSPSAMSN----------- 277
+++ + + L P + Y+ ++G H +
Sbjct: 448 SIVDHYNIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 278 -RSAGYIANREE---PDIQVIKLHKSSTYERYTRGTDP----ILPAVLEIREETEEAFLH 329
R N +Q +K Y+ Y DP ++ A+L+ + EE +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKF-----YKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 330 ALITDLEPSAPSFKLAPAYTLYLAAR 355
+ TDL A + + A +
Sbjct: 562 SKYTDLLRIALMAEDEAIF--EEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 8e-07
Identities = 50/298 (16%), Positives = 85/298 (28%), Gaps = 95/298 (31%)
Query: 144 LTSTCFKLNSLQLRALLLKYQPTPDEPRLPHEVIENVVRVAENLADELARSDGRDVCLEE 203
L T + QL+ K P P + A D E
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPT--------------------EGFAADD------EP 54
Query: 204 ES--ELLLPFLLPDDGYSCEVVRGVPQG---------LIEFISP-LQ-------AAGLCR 244
+ EL+ FL GY +V G L EF + L+ AA L +
Sbjct: 55 TTPAELVGKFL----GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 245 LSAQPTSNGYWTV---YMGPHNSQGPVIR-SPSAM----SNRSAGYIA------NREE-- 288
+ + ++ P + S SA+ +A +A N ++
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 289 PDIQVIKLHKSSTY----ERYTRGTDPILPAVLEIREETEEAFLHALITDLE-------- 336
+++ L++ TY + + L ++ + E+ F L ++
Sbjct: 171 EELR--DLYQ--TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLENPSN 224
Query: 337 -P------SAP-SFKLAPAYTLYLAARYRASTHYRPELIPTERAHRLTLVLVRVAAMI 386
P S P S P + A Y T P E L ++
Sbjct: 225 TPDKDYLLSIPISC---PLIGVIQLAHYVV-TAKLLGFTPGELRSYLKGATGHSQGLV 278
Score = 43.9 bits (103), Expect = 8e-05
Identities = 57/340 (16%), Positives = 102/340 (30%), Gaps = 124/340 (36%)
Query: 120 HLAKLMQAAHLLQAPKYT---G--------DELAELTSTCFKLNSLQLRALLLKYQPTPD 168
+ L +A A G +EL +L T Y
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT---------------YHV--- 182
Query: 169 EPRLPHEVIENVVRVAENLADELARSD---------GRDVC--LEEESELLLPFLLPDDG 217
++ ++++ + EL R+ G ++ LE S PD
Sbjct: 183 -------LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN------TPDKD 229
Query: 218 Y--SCEV------------------VRGVPQGLIEFISPLQAAGLCR---LSAQPTS--- 251
Y S + + G G E S L+ A ++A +
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG--ELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 252 -------NGYWTV----YMGPHNSQG--PVIRSPSAMSNRSAGYIANREE---PDIQVIK 295
+ + ++G P P ++ S + N E P + +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVR-CYEAYPNTSLPPSILEDS---LENNEGVPSPMLSISN 343
Query: 296 LHKSSTYERYTRGTDPILPA--VLEIREETEEAFLHALITDLEPSAPSFKLA-PAYTLY- 351
L + + Y T+ LPA +EI +L+ A + ++ P +LY
Sbjct: 344 LTQEQV-QDYVNKTNSHLPAGKQVEI----------SLVN----GAKNLVVSGPPQSLYG 388
Query: 352 LAARYR---ASTHYRPELIP-TERAHRLTLVLVRVAAMIH 387
L R A + IP +ER + + + VA+ H
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Score = 32.3 bits (73), Expect = 0.35
Identities = 49/336 (14%), Positives = 90/336 (26%), Gaps = 117/336 (34%)
Query: 20 TSSVLGVLMSAM-ALLRGCRLNVLGVLMS---AMA-----LLRGCRLNAALTIQLFSKLF 70
T+ +LG + + L+G + G++ + A + I + LF
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV----SVRKAITV---LF 304
Query: 71 HFLNVW-------AFNRLVANNSIYC-SKAWG-------VRIKN-RLAHIQMWAERQGLE 114
+ A+ SI S + I N +Q + +
Sbjct: 305 -----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 115 LAADCHLAKLMQAAHLLQAPKY---TG--DELAELTSTCFKLNSLQLRALLLKYQPTPDE 169
L A + L+ K +G L L +L LR K D+
Sbjct: 360 LPAGKQVE-----ISLVNGAKNLVVSGPPQSLYGL--------NLTLRKA--KAPSGLDQ 404
Query: 170 PRLPHE----VIENV-------------VRVAENLADELARSDGRDVCLEEESELLLPFL 212
R+P N V ++ + +L +++ ++ +P
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN----VSFNAKDIQIPVY 460
Query: 213 LPDDGYSCEVVRGVPQGLIEFISPLQAAGLCRLSAQPTSNGYWT----------VYMGP- 261
DG +R + + E I + RL W + GP
Sbjct: 461 DTFDG---SDLRVLSGSISERIVDC----IIRLPV------KWETTTQFKATHILDFGPG 507
Query: 262 ----------HNSQGPVIR--SPSAMSNRSA---GY 282
N G +R + G+
Sbjct: 508 GASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 29.2 bits (65), Expect = 2.9
Identities = 47/321 (14%), Positives = 85/321 (26%), Gaps = 121/321 (37%)
Query: 124 LMQAAHLLQAPKYTGDELAEL------TSTC------------------FKLNSLQ-LRA 158
++Q AH + K G EL + F ++ + +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 159 LL---LKYQPTPDEPRLPHEVIENVVRVAENLADE-LARSDGRDVCLEEESELLLPFLLP 214
L ++ LP ++E+ + E + L+ S+ +++ L
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 215 DD--------GYSCEVVRGVPQGLIEFISPLQAAGLCRLSAQPTSNGYWTVYMGPHNSQG 266
G VV G PQ L L+ + A + Q
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR-----KAKAPSGLD------------QS 405
Query: 267 PVIRSPSAMSNRSAGYIANREEPDIQVIKLHKSSTYERYTRGTDPILPAVLEIREETEEA 326
R P S R K R+ LP
Sbjct: 406 ---RIP--FSER-------------------KLKFSNRF-------LP------------ 422
Query: 327 FLHALITDLEPSAP--SFKLAPAYTLYLAARYRASTHYRP-EL-IP---TERAHRLTLVL 379
+ +P S L PA L + + + ++ IP T L
Sbjct: 423 -----VA-----SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL---- 468
Query: 380 VRV--AAMIHNVIEMLLMSIV 398
RV ++ +++ ++ V
Sbjct: 469 -RVLSGSISERIVDCIIRLPV 488
>1v30_A Hypothetical UPF0131 protein PH0828; alpha+beta, structural
genomics, unknown function; HET: NHE; 1.40A {Pyrococcus
horikoshii} SCOP: d.269.1.1
Length = 124
Score = 30.2 bits (68), Expect = 0.44
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 210 PFLLPDDGY-SCEVVRGVPQGLIEFISPLQAAGLCRLSAQPTSNGYWTVYMGPHNSQGPV 268
P+ + G EV V + E I+ ++ RL T G ++ +G
Sbjct: 48 PYAVKGKGKLKVEVYE-VDKETFERINEIEIGTGYRLVEVSTKFGKAFLWEWGSKPRGKR 106
Query: 269 IRS 271
I+S
Sbjct: 107 IKS 109
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.3
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 10/37 (27%)
Query: 324 EEAFLHALITDLEPSAP-SFKLAPAYTLYLAARYRAS 359
E+ L L L+ A S APA LA +A+
Sbjct: 18 EKQALKKLQASLKLYADDS---APA----LA--IKAT 45
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 29.6 bits (67), Expect = 1.5
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 23/95 (24%)
Query: 233 FISPLQAAGLCRLSAQPTSNGYWTVYMGPHNSQGP-----------VIRSPSAMSNRSAG 281
L + S + + +G H P
Sbjct: 44 LHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQ-------- 95
Query: 282 YIANREEPDIQVIKLHKSSTYERYTRGTDPI-LPA 315
Y N E D+ +++L +S + PI LP
Sbjct: 96 YDPNTFENDVALVELLESPVLNAFVM---PICLPE 127
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 29.5 bits (67), Expect = 1.7
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 13/69 (18%)
Query: 254 YWTVYMGPHNSQGPVIRSPSAMSNRSA------GYIANREEPDIQVIKLHKSSTYERYTR 307
+G H+ S R A Y+ DI +++LH+ +
Sbjct: 51 NLIAVLGEHDLSEH---DGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVV 107
Query: 308 GTDPI-LPA 315
P+ LP
Sbjct: 108 ---PLCLPE 113
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 29.5 bits (67), Expect = 1.8
Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 24/84 (28%)
Query: 245 LSA---QPTSNGYWTVYMGPHNSQGP--------VIRSPSAMSNRSAGYIANREEPDIQV 293
L+A + +G H P I+ P + D+ +
Sbjct: 37 LTAAHCLAQRMAQLRLVLGLHTLDSPGLTFHIKAAIQHPRYKPVPALEN-------DLAL 89
Query: 294 IKLHKSSTYERYTRGTDPILPAVL 317
++L + I P L
Sbjct: 90 LQLDGKVKP------SRTIRPLAL 107
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 28.7 bits (65), Expect = 3.4
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 252 NGYWTVYMGPHN----SQGPVIRSPSAMSNRSAGYIANREEPDIQVIKLHKSSTYERYTR 307
G +Y+G HN ++ + R P + DI +I+L++ +
Sbjct: 43 RGNMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIA 102
Query: 308 GTDPI-LPA 315
P+ LP+
Sbjct: 103 ---PLSLPS 108
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 28.9 bits (64), Expect = 4.0
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 255 WTVYMGPHNSQGPV---IRSPS-AMSNRSAGYIANREEPDIQVIKLHKSSTYERYTRGTD 310
V +G + + P+ ++ + I + D+ +IKL Y + R
Sbjct: 512 IKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIR--- 568
Query: 311 PI-LPA 315
PI LP
Sbjct: 569 PICLPC 574
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 28.0 bits (63), Expect = 4.6
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 254 YWTVYMGPHNSQGPVIRSPSAMSNRSAGYIANREEPDIQVIKLHKSSTYERYTRGTDPIL 313
+ V +G H P + DI ++KL + TD ++
Sbjct: 69 SYKVILGAHQEVNL---EPHVQEIEVSRLFLEPTRKDIALLKLSSPAVI------TDKVI 119
Query: 314 PAVL 317
PA L
Sbjct: 120 PACL 123
>2omo_A DUF176; structural genomics, APC6266, PSI-2, protein structure
initi midwest center for structural genomics, MCSG,
oxidoreductas; HET: MSE; 1.83A {Nitrosomonas europaea}
SCOP: d.58.4.11
Length = 124
Score = 27.1 bits (60), Expect = 4.9
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 297 HKSSTYERYTRGTDPILPAVLEIREETEEAFLHALITDLEPS 338
H S Y +G + ++ + EAF A + E S
Sbjct: 10 HSSGRENLYFQGHMYVTIVYASVKTDKTEAFKEATRMNHEQS 51
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 27.9 bits (63), Expect = 5.1
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 17/82 (20%)
Query: 245 LSA----QPTSNGYWTVYMGPHNSQGPVIRSPSAMSNRSA------GYIANREEPDIQVI 294
+ A Q + ++ +G H+S S ++ Y E D+ VI
Sbjct: 39 VCAAHCMQGEAPALVSLVVGEHDSSAA---STVRQTHDVDSIFVNENYDPATLENDVSVI 95
Query: 295 KLHKSSTYERYTRGTDPI-LPA 315
K + T++ PI P
Sbjct: 96 KTAVAITFDINVG---PICAPD 114
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 27.6 bits (62), Expect = 6.0
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 245 LSA----QPTSNGYWTVYMGPHNSQGPVIRSPSAMSNRSAGYIANREEPDIQVIKLHKSS 300
L+A + ++G H+ + + E D+ ++KL + +
Sbjct: 36 LTARQCFPSRDLKDYEAWLGIHD-VHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPA 94
Query: 301 TYERYTRGTDPILPAVL 317
D + L
Sbjct: 95 VL------DDFVSTIDL 105
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 27.5 bits (62), Expect = 7.3
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 254 YWTVYMGPHNSQGPVIRSPSAMSNRSA------GYIANREEPDIQVIKLHKSSTYERYTR 307
WT +G H SP + Y R++ DI ++ L Y Y +
Sbjct: 52 KWTAILGLHMKSNL--TSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQ 109
Query: 308 GTDPI-LPA 315
PI LP
Sbjct: 110 ---PISLPE 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.403
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,246,430
Number of extensions: 375613
Number of successful extensions: 723
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 25
Length of query: 410
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 314
Effective length of database: 4,021,377
Effective search space: 1262712378
Effective search space used: 1262712378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)