RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2532
         (410 letters)



>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit,
          C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 119

 Score = 25.9 bits (57), Expect = 4.2
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 30 AMALLRGCRLNVLGVLMSAMALLRGCRLNAALTIQLFSKLFHFLNVWAFNRLVANNSI 87
          A A+LR     + GVL  A ++L    +    T +  S +F  L+   F  LVA+   
Sbjct: 17 AYAILRSIPNKLGGVLALAFSILILALIPLLHTSKQRSMMFRPLSQCLFWALVADLLT 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,475,413
Number of extensions: 67327
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 3
Length of query: 410
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,213,086
Effective search space: 391826778
Effective search space used: 391826778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)