BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2533
(684 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 67/76 (88%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE +
Sbjct: 25 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 84
Query: 166 RTGPIVTLEIAKQGAI 181
RT +VTLE+AKQGAI
Sbjct: 85 RTSSVVTLEVAKQGAI 100
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
+GRL AGDQLL VDG+SLVG++QE+AAE + RT +VTLE+AKQGAI
Sbjct: 54 DGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI 100
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 67/76 (88%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE +
Sbjct: 19 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 78
Query: 166 RTGPIVTLEIAKQGAI 181
RT +VTLE+AKQGA+
Sbjct: 79 RTSSVVTLEVAKQGAL 94
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
+GRL AGDQLL VDG+SLVG++QE+AAE + RT +VTLE+AKQGA+
Sbjct: 48 DGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAL 94
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 66/75 (88%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE +
Sbjct: 19 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 78
Query: 166 RTGPIVTLEIAKQGA 180
RT +VTLE+AKQGA
Sbjct: 79 RTSSVVTLEVAKQGA 93
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 40/46 (86%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
+GRL AGDQLL VDG+SLVG++QE+AAE + RT +VTLE+AKQGA
Sbjct: 48 DGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGA 93
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 110 bits (276), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/76 (71%), Positives = 67/76 (88%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE +
Sbjct: 25 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 84
Query: 166 RTGPIVTLEIAKQGAI 181
RT +VTLE+AKQGAI
Sbjct: 85 RTSSVVTLEVAKQGAI 100
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
+GRL AGDQLL VDG+SLVG++QE+AAE + RT +VTLE+AKQGAI
Sbjct: 54 DGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI 100
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
AG ++LGI++K+V +GGAA +GR+Q DQ+++VDG SLVG+TQ AA L T V
Sbjct: 30 AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 89
Query: 174 EIAKQ 178
I ++
Sbjct: 90 VIGRE 94
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++GR+Q DQ+++VDG SLVG+TQ AA L T V I ++
Sbjct: 50 RDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 94
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
AG ++LGI++K+V +GGAA +GR+Q DQ+++VDG SLVG+TQ AA L T V
Sbjct: 35 AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 94
Query: 174 EIAKQ 178
I ++
Sbjct: 95 VIGRE 99
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++GR+Q DQ+++VDG SLVG+TQ AA L T V I ++
Sbjct: 55 RDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 99
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
AG ++LGI++K+V +GGAA +GR+Q DQ+++VDG SLVG+TQ AA L T V
Sbjct: 106 AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 165
Query: 174 EIAKQ 178
I ++
Sbjct: 166 VIGRE 170
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
++GR+Q DQ+++VDG SLVG+TQ AA L T V I ++
Sbjct: 126 RDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 170
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 113 GAGQD----RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
GAG D +LGI++K+V +GGAA +GR+Q D L++VDG SLVG+TQ AA L T
Sbjct: 25 GAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK 84
Query: 169 PIVTLEIAKQ 178
V I ++
Sbjct: 85 GRVRFMIGRE 94
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+++GR+Q D L++VDG SLVG+TQ AA L T V I ++
Sbjct: 49 HRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 94
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 113 GAGQD----RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
GAG D +LGI++K+V +GGAA +GR+Q D L++VDG SLVG+TQ AA L T
Sbjct: 101 GAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK 160
Query: 169 PIVTLEIAKQ 178
V I ++
Sbjct: 161 GRVRFMIGRE 170
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+++GR+Q D L++VDG SLVG+TQ AA L T V I ++
Sbjct: 125 HRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 113 GAGQD----RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
GAG D +LGI++K+V +GGAA +GR+Q D L++VDG SLVG+TQ AA L T
Sbjct: 101 GAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK 160
Query: 169 PIVTLEIAKQ 178
V I ++
Sbjct: 161 GRVRFMIGRE 170
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+++GR+Q D L++VDG SLVG+TQ AA L T V I ++
Sbjct: 125 HRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
GI++KS+ K A + +GR+Q GDQ++ VDG +L G T ++A E L TG V L + ++G
Sbjct: 34 GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
+GR+Q GDQ++ VDG +L G T ++A E L TG V L + ++G
Sbjct: 49 DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
S + G+ L IY+K+V GAA +GRL+ GDQ++ V+GQSL G+T E+A L
Sbjct: 40 FSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILK 99
Query: 166 RTGPIVTLEI 175
RT VTL +
Sbjct: 100 RTKGTVTLMV 109
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+++GRL+ GDQ++ V+GQSL G+T E+A L RT VTL +
Sbjct: 67 SEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
GIY+K+++ GAA+++GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 38 GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 95
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 53 DGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 95
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
GIY+K+++ GAA+++GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 33 GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 90
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 48 DGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 90
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
G+ ++++V GG AD +GRLQ GD +LK+ G ++ G+T E+ A+ L G V + +A+
Sbjct: 39 GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDP 98
Query: 180 AIYHGLATLLSQPS 193
A G ++ S PS
Sbjct: 99 A---GDISVTSGPS 109
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQP 344
+++GRLQ GD +LK+ G ++ G+T E+ A+ L G V + +A+ A G ++ S P
Sbjct: 52 DRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPA---GDISVTSGP 108
Query: 345 S 345
S
Sbjct: 109 S 109
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
LGI++KS++ GGAA +GRL+ DQL+ V+G+SL+G ++A E L R+ ++ E K+
Sbjct: 39 LGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRS---MSTEGNKR 95
Query: 179 GAI 181
G I
Sbjct: 96 GMI 98
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
++GRL+ DQL+ V+G+SL+G ++A E L R+ ++ E K+G I
Sbjct: 54 KDGRLRVNDQLIAVNGESLLGKANQEAMETLRRS---MSTEGNKRGMI 98
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT 167
LGI++KS++ GGAA +GRL+ DQL+ V+G+SL+G ++A E L R+
Sbjct: 36 LGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRS 84
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT 319
++GRL+ DQL+ V+G+SL+G ++A E L R+
Sbjct: 51 KDGRLRVNDQLIAVNGESLLGKANQEAMETLRRS 84
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
G+++ +VKGG ADA+GRL GDQ+L V+G+ + TQE A L + VTLE+ +
Sbjct: 30 GVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGR 87
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+ +GRL GDQ+L V+G+ + TQE A L + VTLE+ +
Sbjct: 43 DADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGR 87
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
GIY+K+V+ GAA+++GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 43 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 100
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 58 DGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 100
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
GIY+K+V+ GAA+++GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 34 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 91
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 49 DGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 91
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
GIY+K+V+ GAA+++GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 34 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 91
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 49 DGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 91
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
IY+ S+V+GGAA +G+LQ GD+LL V+ L +T E+A L T V L++AK +
Sbjct: 35 IYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Query: 181 IY 182
+Y
Sbjct: 95 MY 96
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
+++G+LQ GD+LL V+ L +T E+A L T V L++AK ++Y
Sbjct: 47 HKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY 96
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
GIY+K+++ GAA+++GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 41 GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 98
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+GR+ GD++L V+G SL G T ++A E L TG +V L + K
Sbjct: 56 DGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 98
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
IY+ +++GGAA +G+LQ GD+LL V+ SL +T E+A L T V L++AK +
Sbjct: 35 IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Query: 181 IY 182
+Y
Sbjct: 95 MY 96
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
+++G+LQ GD+LL V+ SL +T E+A L T V L++AK ++Y
Sbjct: 47 HKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY 96
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
IY+ +++GGAA +G+LQ GD+LL V+ +L +T E+A L T V L++AK G+
Sbjct: 34 IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGS 93
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
+++G+LQ GD+LL V+ +L +T E+A L T V L++AK G+
Sbjct: 46 HKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGS 93
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
IY+ ++ GGAA +GRLQ GD+LL V+ SL +T E+A L T +V L++ K
Sbjct: 56 IYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT 115
Query: 181 IY 182
IY
Sbjct: 116 IY 117
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
++GRLQ GD+LL V+ SL +T E+A L T +V L++ K IY
Sbjct: 69 KDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY 117
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT 167
LGI+IKS++ GGAA +GRL+ DQL+ V+G++L+G + +A E L R+
Sbjct: 55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS 103
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT 319
++GRL+ DQL+ V+G++L+G + +A E L R+
Sbjct: 70 KDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS 103
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D GI++ ++ GG AD +G LQ GDQ+L V+G L G + E+AA L G VT+
Sbjct: 22 GGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTI 81
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
+G LQ GDQ+L V+G L G + E+AA L G VT+
Sbjct: 43 SGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTI 81
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
IY+ +++GGAA +G+LQ GD+LL V+ L +T E+A L T V L++AK +
Sbjct: 43 IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAKPTS 102
Query: 181 IY 182
+Y
Sbjct: 103 MY 104
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
+++G+LQ GD+LL V+ L +T E+A L T V L++AK ++Y
Sbjct: 55 HKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY 104
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
IY+ +++GGAA +G+LQ GD+LL V+ L +T E+A L T V L++AK +
Sbjct: 35 IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Query: 181 IY 182
+Y
Sbjct: 95 MY 96
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
+++G+LQ GD+LL V+ L +T E+A L T V L++AK ++Y
Sbjct: 47 HKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY 96
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
IY+ +++GGAA +G+LQ GD+LL V+ L +T E+A L T V L++AK +
Sbjct: 35 IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Query: 181 IY 182
+Y
Sbjct: 95 MY 96
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
+++G+LQ GD+LL V+ L +T E+A L T V L++AK ++Y
Sbjct: 47 HKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY 96
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
+ + +E G G GIYI S++KGGA A+GR++ GD LL+V+ + ++ + A L
Sbjct: 24 VGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
Query: 166 ----RTGPIVTLEIAKQGA 180
+ GPIV L +AK G
Sbjct: 80 DIVHKPGPIV-LTVAKSGG 97
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
+ + +E G G GIYI S++KGGA A+GR++ GD LL+V+ + ++ + A L
Sbjct: 24 VGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
Query: 166 ----RTGPIVTLEIAKQGA 180
+ GPIV L +AK G
Sbjct: 80 DIVHKPGPIV-LTVAKSGG 97
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
+ + +E G G GIYI S++KGGA A+GR++ GD LL+V+ + ++ + A L
Sbjct: 24 VGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
Query: 166 ----RTGPIVTLEIAKQGA 180
+ GPIV L +AK G
Sbjct: 80 DIVHKPGPIV-LTVAKSGG 97
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
+ + +E G G GIYI S++KGGA A+GR++ GD LL+V+ + ++ + A L
Sbjct: 24 VGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
Query: 166 ----RTGPIVTLEIAKQGA 180
+ GPIV L +AK G
Sbjct: 80 DIVHKPGPIV-LTVAKSGG 97
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D GI++ ++ GG AD +G L+ GD++L V+G +L T E+AA L R G VT+
Sbjct: 34 GGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 93
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
+G L+ GD++L V+G +L T E+AA L R G VT+
Sbjct: 55 SGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 93
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D GI++ ++ GG AD +G L+ GD++L V+G +L T E+AA L R G VT+
Sbjct: 31 GGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 90
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
+G L+ GD++L V+G +L T E+AA L R G VT+
Sbjct: 52 SGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 90
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D GI+I ++ GG AD +G L+ GDQ+L V+G L + E+AA L G VT+
Sbjct: 326 GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 385
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
IY+ +++GGAA +GRLQ GD++L V+ L + E A L T +V L++AK
Sbjct: 186 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSN 245
Query: 181 IY 182
Y
Sbjct: 246 AY 247
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 72 ASAYLPNYPGTPP-----NRLDSSMKSHSVRDMLRQEAKLSEMSEEGAG----------- 115
+ A+LPN +PP + L++ + + E E G G
Sbjct: 25 SPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPH 84
Query: 116 -QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
D I+I ++ GGAA +GRL+ D +L V+ + +T A E L G IV L
Sbjct: 85 IGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY 144
Query: 175 IAKQ 178
+ ++
Sbjct: 145 VMRR 148
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
+++GRLQ GD++L V+ L + E A L T +V L++AK Y
Sbjct: 198 HKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAY 247
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
+G L+ GDQ+L V+G L + E+AA L G VT+
Sbjct: 347 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 385
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
IY+ +++GGAA +G+LQ GD+LL V+ +L +T E+A L T V L++AK
Sbjct: 40 IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK 96
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+++G+LQ GD+LL V+ +L +T E+A L T V L++AK
Sbjct: 52 HKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK 96
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
IYI +++GGAA +GRLQ GD+LL V+ +L + E+A L T +V L++AK G+
Sbjct: 35 IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGS 94
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
++GRLQ GD+LL V+ +L + E+A L T +V L++AK G+
Sbjct: 48 KDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGS 94
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
IY+ +++GGAA +G+LQ GD+LL V+ L +T E+A L T V L++AK
Sbjct: 31 IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 87
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+++G+LQ GD+LL V+ L +T E+A L T V L++AK
Sbjct: 43 HKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 87
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D GI+I ++ GG AD +G L+ GDQ+L V+G L + E+AA L G VT+
Sbjct: 33 GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 92
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
+G L+ GDQ+L V+G L + E+AA L G VT+
Sbjct: 54 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 92
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
IY+ +++GGAA +G+LQ GD+LL V+ L +T E+A L T V L++AK
Sbjct: 41 IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 97
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+++G+LQ GD+LL V+ L +T E+A L T V L++AK
Sbjct: 53 HKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 97
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D GI+I ++ GG AD +G L+ GDQ+L V+G L + E+AA L G VT+
Sbjct: 33 GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 92
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
+G L+ GDQ+L V+G L + E+AA L G VT+
Sbjct: 54 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 92
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
+ + +E G G GIYI S++KGGA A+GR++ GD LL+V+ + ++ + A L
Sbjct: 24 VGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
Query: 166 ----RTGPIVTLEIAK 177
+ GPIV L +AK
Sbjct: 80 DIVHKPGPIV-LTVAK 94
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
IY+ +++GGAA +GRLQ GD++L V+ L + E A L T +V L++AK
Sbjct: 35 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 91
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+++GRLQ GD++L V+ L + E A L T +V L++AK
Sbjct: 47 HKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 91
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
IY+ +++GGAA +GRLQ GD++L V+ L + E A L T +V L++AK
Sbjct: 129 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 185
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
D I+I ++ GGAA +GRL+ D +L V+ + +T A E L G IV L +
Sbjct: 30 DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM 89
Query: 177 KQ 178
++
Sbjct: 90 RR 91
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+++GRLQ GD++L V+ L + E A L T +V L++AK
Sbjct: 141 HKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 185
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
IY+ +++GGAA +GRLQ GD++L V+ L + E A L T +V L++AK
Sbjct: 139 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 195
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
D I+I ++ GGAA +GRL+ D +L V+ + +T A E L G IV L +
Sbjct: 40 DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM 99
Query: 177 KQ 178
++
Sbjct: 100 RR 101
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+++GRLQ GD++L V+ L + E A L T +V L++AK
Sbjct: 151 HKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 195
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 5/62 (8%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAA----EYLVRTGPIVTLEI 175
GIYI S++KGGA A+GR++ GD LL+V+ + ++ + A E + +TGPI +L +
Sbjct: 27 GIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPI-SLTV 85
Query: 176 AK 177
AK
Sbjct: 86 AK 87
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
IY+ +++GGAA +GRLQ GD++L V+ L + E A L T +V L++AK
Sbjct: 132 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 188
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
D I+I ++ GGAA +GRL+ D +L V+ + +T A E L G IV L +
Sbjct: 33 DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM 92
Query: 177 KQ 178
++
Sbjct: 93 RR 94
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+++GRLQ GD++L V+ L + E A L T +V L++AK
Sbjct: 144 HKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 188
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL----------VRTGP 169
IYI V+ GG AD +G L+ GDQLL V+G S+ G EKA E L VR+GP
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGP 90
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 10/47 (21%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYL----------VRTGP 321
+++G L+ GDQLL V+G S+ G EKA E L VR+GP
Sbjct: 44 DRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGP 90
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 5/62 (8%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAA----EYLVRTGPIVTLEI 175
GIYI S++KGGA A+GR++ GD LL+V+ + ++ + A E + +TGPI +L +
Sbjct: 30 GIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPI-SLTV 88
Query: 176 AK 177
AK
Sbjct: 89 AK 90
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
GIY+KSV+ G AA NG +Q D+++ VDG ++ G E L G +V L + ++
Sbjct: 47 GIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRR 105
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
NG +Q D+++ VDG ++ G E L G +V L + ++
Sbjct: 61 HNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRR 105
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDG 149
SM VR +++QEA +S +G ++R+ I I + G AAD + L+ GD +L V+G
Sbjct: 1 SMPVRRVR-VVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNG 59
Query: 150 QSLVGITQEKAAEYLVRTGPIVTLEI 175
L T ++A + L R G V LE+
Sbjct: 60 TDLRQATHDQAVQALKRAGKEVLLEV 85
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+Q+ L+ GD +L V+G L T ++A + L R G V LE+
Sbjct: 43 DQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEV 85
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+ GI+I ++ GG AD +G L+ GDQ+L V+G L + E+AA L G VT+
Sbjct: 25 GGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 84
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
+G L+ GDQ+L V+G L + E+AA L G VT+
Sbjct: 46 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 84
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+ GI+I ++ GG AD +G L+ GDQ+L V+G L + E+AA L G VT+
Sbjct: 30 GGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 89
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
+G L+ GDQ+L V+G L + E+AA L G VT+
Sbjct: 51 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 89
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
G+YI++++ G A A+GRL GD++L+V+G SL+G+ +A + + G + +AK
Sbjct: 37 GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAK 94
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
+GRL GD++L+V+G SL+G+ +A + + G + +AK
Sbjct: 52 DGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAK 94
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
+ + +E G G GIYI S+ KGGA A+GR++ GD LL+V+ + + + A L
Sbjct: 18 VGQSNERGDG----GIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 73
Query: 166 ----RTGPIVTLEIAK 177
+ GPIV L +AK
Sbjct: 74 DIVHKPGPIV-LTVAK 88
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
D GI+I ++ GGAA +GRL+ D +L+V+ + ++ KA E L G IV L +
Sbjct: 37 DDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVR 96
Query: 177 KQGAI 181
++ I
Sbjct: 97 RRRPI 101
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
+ + +E G G GIYI S+ KGGA A+GR++ GD LL+V+ + + + A L
Sbjct: 20 VGQSNERGDG----GIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 75
Query: 166 ----RTGPIVTLEIAK 177
+ GPIV L +AK
Sbjct: 76 DIVHKPGPIV-LTVAK 90
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
IY+ +++GGAA +G+LQ GD+LL V+ L +T E+A L T V L+
Sbjct: 30 IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLK 83
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 326
+++G+LQ GD+LL V+ L +T E+A L T V L+
Sbjct: 42 HKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLK 83
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL 164
IY+K+++ GAA +GRL+AGD+L++V+G LVG +QE+ L
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL 103
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL 316
Q+GRL+AGD+L++V+G LVG +QE+ L
Sbjct: 73 QDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL 103
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
+ + +E G G GIYI S+ KGGA A+GR++ GD LL+V+ + + + A L
Sbjct: 20 VGQSNERGDG----GIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 75
Query: 166 ----RTGPIVTLEIAK 177
+ GPIV L +AK
Sbjct: 76 DIVHKPGPIV-LTVAK 90
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
D I+I ++ GGAA +GRL+ D +L+V+ + +T KA E L G IV L +
Sbjct: 29 DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVK 88
Query: 177 KQGA 180
++ A
Sbjct: 89 RRKA 92
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
GI+I V GAA +GRL+ G +LL+V+ QSL+G+T +A + L G +T+
Sbjct: 45 GIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTV 98
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
++GRL+ G +LL+V+ QSL+G+T +A + L G +T+
Sbjct: 59 RDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTV 98
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
GIY+ + + GAA +GRLQ GD++L V+GQ L + + A + G V+L +
Sbjct: 40 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 95
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+GRLQ GD++L V+GQ L + + A + G V+L +
Sbjct: 55 DGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 95
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 102 QEAKLSEMSEEGAG-------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVG 154
+E +L + EG G + G++I ++KGG AD+ G LQ GD++++++G S+
Sbjct: 86 KEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISS 144
Query: 155 ITQEKAAEYLVRTGPIVTLEIAKQGAI 181
T E+ L+RT V++++ G I
Sbjct: 145 CTHEEVIN-LIRTEKTVSIKVRHIGLI 170
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG--PIVTLEIAKQ 178
IY+K+++ GAA +GRL+AGD+L++V+G L G +QE+ L T V+L + +Q
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 100
Query: 179 GAIYH 183
+H
Sbjct: 101 EEAFH 105
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG--PIVTLEIAKQGAIYH 335
Q+GRL+AGD+L++V+G L G +QE+ L T V+L + +Q +H
Sbjct: 54 QDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFH 105
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
GIY+ + + GAA +GRLQ GD++L V+GQ L + + A + G V+L +
Sbjct: 38 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+GRLQ GD++L V+GQ L + + A + G V+L +
Sbjct: 53 DGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 80 PGTPPNRLDSSMKSHSVRDMLRQ-EAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRL 138
PG P +L ++ R +R+ +A +S +G ++++ I I + KG AAD L
Sbjct: 63 PGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEAL 122
Query: 139 QAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
GD +L V+G+ L T ++A + L +TG V LE+
Sbjct: 123 FVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 159
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 275 RFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+ ++ L+ +Q L GD +L V+G+ L T ++A + L +TG V LE+
Sbjct: 109 KIFKGLAA--DQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 159
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
+YI V+ GG +GRL+ GDQL+ ++ +S++G++ E+A + R
Sbjct: 43 VYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITR 88
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 318
++GRL+ GDQL+ ++ +S++G++ E+A + R
Sbjct: 56 KDGRLKPGDQLVSINKESMIGVSFEEAKSIITR 88
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 113 GAGQDRLG---IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
G G+D G + ++ ++K G A GRL+ GD +L ++G+S G+T +A E + GP
Sbjct: 29 GGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGP 88
Query: 170 IVTLEIAK 177
+ L I +
Sbjct: 89 QLHLVIRR 96
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
GRL+ GD +L ++G+S G+T +A E + GP + L I +
Sbjct: 55 GRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRR 96
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
IYI +V GAAD +GRL++GD+L+ VDG ++G + + + + + AKQG
Sbjct: 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQA--------AKQGH 80
Query: 181 I 181
+
Sbjct: 81 V 81
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
+ +GRL++GD+L+ VDG ++G + + + + + AKQG +
Sbjct: 41 DTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQA--------AKQGHV 81
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
GIY+ + + GAA +GRLQ GD++L V+GQ L + + A + G V+L +
Sbjct: 48 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+GRLQ GD++L V+GQ L + + A + G V+L +
Sbjct: 63 DGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
D I+I ++ GGAA +GRL+ D +L+V+ + +T KA E L G IV L +
Sbjct: 39 DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAGSIVRLYVK 98
Query: 177 KQGAI 181
++ +
Sbjct: 99 RRKPV 103
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 109 MSEEGAGQDR---LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
M+ G R L IY+ SV GG +GR++ GD LL VDG L +++ +A L
Sbjct: 40 MTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK 99
Query: 166 RTGPIVTLEI--AKQGAI 181
RT + L+ K+G+I
Sbjct: 100 RTSSSIVLKALEVKEGSI 117
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI--AKQGAI 333
+++GR++ GD LL VDG L +++ +A L RT + L+ K+G+I
Sbjct: 67 SRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKEGSI 117
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL 164
IY+K+++ GAA +GRL+AGD+L++V+G L G +QE+ L
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLL 78
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL 316
Q+GRL+AGD+L++V+G L G +QE+ L
Sbjct: 48 QDGRLKAGDRLIEVNGVDLAGKSQEEVVSLL 78
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
+S M ++ + GIY+KS++ G AA +GR++ D++L+VD ++ G+ Q E L
Sbjct: 31 ISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR 90
Query: 166 RTG 168
G
Sbjct: 91 NAG 93
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-PIV 171
G+ GI+IK V++ A NG L+ GD++++VDG L + E+A E + + G P+V
Sbjct: 55 GEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVV 112
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-PIV 323
+NG L+ GD++++VDG L + E+A E + + G P+V
Sbjct: 74 KNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVV 112
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
RLG +I V KG AD G L+AGD++L+ +G+ L G T E+ ++ + +EI
Sbjct: 53 RLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEI 110
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
D G++I +++GG A +GRL + D++L ++G L T E AA+ + +G V L IA
Sbjct: 27 DEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIA 86
Query: 177 KQG 179
+ G
Sbjct: 87 RPG 89
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
RLG +I V KG AD G L+AGD++L+ +G+ L G T E+ ++ + +EI
Sbjct: 53 RLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEI 110
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 109 MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
++ G + LGIYI V G A+ +G L+ GDQ+L+V+G+S + I ++A L+++
Sbjct: 36 LTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVR-LLKSS 93
Query: 169 PIVTLEIAKQGAIYHGLATL 188
+ L + G + H T+
Sbjct: 94 RHLILTVKDVGRLPHARTTV 113
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATL 340
L+ GDQ+L+V+G+S + I ++A L+++ + L + G + H T+
Sbjct: 64 LKVGDQILEVNGRSFLNILHDEAVR-LLKSSRHLILTVKDVGRLPHARTTV 113
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-PIV 171
G+ GI+IK V++ A NG L+ GD++++VDG L + E+A E + + G P+V
Sbjct: 35 GEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVV 92
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-PIV 323
+NG L+ GD++++VDG L + E+A E + + G P+V
Sbjct: 54 KNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVV 92
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
I I S+ KGG A+ G + GD++L ++ SL G +A L G VTL+I KQ
Sbjct: 32 IIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ 89
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+ G + GD++L ++ SL G +A L G VTL+I KQ
Sbjct: 45 RTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ 89
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 109 MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
+S +G ++++ I I + KG AAD L GD +L V+G+ L T ++A + L +TG
Sbjct: 16 ISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG 75
Query: 169 PIVTLEI 175
V LE+
Sbjct: 76 KEVVLEV 82
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 275 RFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+ ++ L+ +Q L GD +L V+G+ L T ++A + L +TG V LE+
Sbjct: 32 KIFKGLAA--DQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 109 MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
+S +G ++++ I I + KG AAD L GD +L V+G+ L T ++A + L +TG
Sbjct: 16 ISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG 75
Query: 169 PIVTLEI 175
V LE+
Sbjct: 76 KEVVLEV 82
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 275 RFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+ ++ L+ +Q L GD +L V+G+ L T ++A + L +TG V LE+
Sbjct: 32 KIFKGLAA--DQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 113 GAGQDR---LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
GA DR + I SV GG AD G ++ GD+LL VDG L+G T +A L + G
Sbjct: 23 GAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ 82
Query: 170 IVTLEI 175
L I
Sbjct: 83 EAALLI 88
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
++ G ++ GD+LL VDG L+G T +A L + G L I
Sbjct: 46 DREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 109 MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
+S +G ++++ I I + KG AAD L GD +L V+G+ L T ++A + L +TG
Sbjct: 20 ISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG 79
Query: 169 PIVTLEI 175
V LE+
Sbjct: 80 KEVVLEV 86
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 275 RFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
+ ++ L+ +Q L GD +L V+G+ L T ++A + L +TG V LE+
Sbjct: 36 KIFKGLAA--DQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
GI++ + +GGAA G LQ GD++L ++G + + A L P + L + ++
Sbjct: 39 GIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREA 98
Query: 180 A 180
Sbjct: 99 G 99
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGI-------------TQ 157
E G G + I +++ GG A+ +G+L GDQ++ ++G SLVG+ Q
Sbjct: 21 ESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 80
Query: 158 EKAAEYLVRTGPIVTLEIAK 177
+ +VR P+ T+ I +
Sbjct: 81 SRVKLNIVRCPPVTTVLIRR 100
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGI-------------TQEKAAEYLVRTGPIVTLEIAK 329
++G+L GDQ++ ++G SLVG+ Q + +VR P+ T+ I +
Sbjct: 44 KSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRR 100
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 100 LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEK 159
+ + AK S G + ++ +Y+ + + G A NGR++ GDQ+++++G+S +T +
Sbjct: 17 MEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHAR 76
Query: 160 AAEYLVRTG 168
A E L+++G
Sbjct: 77 AIE-LIKSG 84
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 320
+NGR++ GDQ+++++G+S +T +A E L+++G
Sbjct: 51 RNGRMRVGDQIIEINGESTRDMTHARAIE-LIKSG 84
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 114 AGQDRL--GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
G D L I I V + GAA +GRL AGDQ+L+V+G L T ++A L +T V
Sbjct: 23 GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRV 82
Query: 172 TLEIAKQGAIY 182
L + + A Y
Sbjct: 83 RLTLYRDEAPY 93
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
++GRL AGDQ+L+V+G L T ++A L +T V L + + A Y
Sbjct: 45 KDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPY 93
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
D I+I ++ GGAA +GRL+ D +L V+ + +T A E L G IV L +
Sbjct: 30 DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM 89
Query: 177 KQ 178
++
Sbjct: 90 RR 91
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
D I+I ++ GGAA +GRL+ D +L V+ + +T A E L G IV L +
Sbjct: 29 DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM 88
Query: 177 KQ 178
++
Sbjct: 89 RR 90
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
D I+I ++ GGAA +GRL+ D +L V+ + +T A E L G IV L +
Sbjct: 29 DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM 88
Query: 177 KQ 178
++
Sbjct: 89 RR 90
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
D GI+I ++ GGAA +GRL D +L+V+ + + +A E L GP
Sbjct: 32 DDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGP 84
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
+ I V GG AD G ++ GD+LL VDG L+G T +A L + G TL I
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
++ G ++ GD+LL VDG L+G T +A L + G TL I
Sbjct: 149 DREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
I I V + GAA +GRL AGDQ+L+V+G L + E+A L +T V L + +
Sbjct: 44 AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDE 103
Query: 180 AIY 182
A Y
Sbjct: 104 AHY 106
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
++GRL AGDQ+L+V+G L + E+A L +T V L + + A Y
Sbjct: 58 RDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHY 106
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 87 LDSSMKSHSV-RD---MLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGD 142
L+ +K SV RD ML + +M+E G RL +I V KG AD G L+ GD
Sbjct: 33 LNKRLKDGSVPRDSGAMLGLKVVGGKMTESG----RLCAFITKVKKGSLADTVGHLRPGD 88
Query: 143 QLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
++L+ +G+ L G T E+ ++ + P +E+
Sbjct: 89 EVLEWNGRLLQGATFEEVYNIILESKPEPQVEL 121
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSL-VGITQEKAAEYLVRTGPIVTLEIAK 177
LGI+++ + +G A +GRL+ DQ+L ++GQ+L IT ++A L + V L IA+
Sbjct: 49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIAR 108
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGI 155
E G G + I +++ GG A+ +G+L GDQ++ ++G SLVG+
Sbjct: 21 ESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGL 65
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGI 307
++G+L GDQ++ ++G SLVG+
Sbjct: 44 KSGKLNIGDQIMSINGTSLVGL 65
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGI 155
E G G + I +++ GG A+ +G+L GDQ++ ++G SLVG+
Sbjct: 25 ESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGL 69
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGI 307
++G+L GDQ++ ++G SLVG+
Sbjct: 48 KSGKLNIGDQIMSINGTSLVGL 69
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL 164
+ I +++GGAA+ +G +QAGD +L V+ + LV ++ + A E L
Sbjct: 35 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVL 78
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL 164
+ I +++GGAA+ +G +QAGD +L V+ + LV ++ + A E L
Sbjct: 28 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVL 71
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV-RTGPIVTLEIAKQ 178
GIY+ V +GG A+ G LQ GD++++V+G + +T ++A + L R+ +V L + +Q
Sbjct: 65 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 123
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL 164
+ I +++GGAA+ +G +QAGD +L V+ + LV ++ + A E L
Sbjct: 30 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVL 73
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 89 SSMKSHSVRDMLRQEAKLSE---MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLL 145
SS S VR + + AK E S G + +GIY+ V G A+ G L+ GDQ+L
Sbjct: 2 SSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQIL 60
Query: 146 KVDGQSLVGITQEKAAEYL 164
+V+ +SL +T +A + L
Sbjct: 61 RVNDKSLARVTHAEAVKAL 79
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV-RTGPIVTLEIAKQ 178
GIY+ V +GG A+ G LQ GD++++V+G + +T ++A + L R+ +V L + +Q
Sbjct: 54 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 112
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV-RTGPIVTLEIAKQ 178
GIY+ V +GG A+ G LQ GD++++V+G + +T ++A + L R+ +V L + +Q
Sbjct: 54 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 112
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV-RTGPIVTLEIAKQ 178
GIY+ V +GG A+ G LQ GD++++V+G + +T ++A + L R+ +V L + +Q
Sbjct: 44 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 102
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV-RTGPIVTLEIAKQ 178
GIY+ V +GG A+ G LQ GD++++V+G + +T ++A + L R+ +V L + +Q
Sbjct: 46 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 104
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV-RTGPIVTLEIAKQ 178
GIY+ V +GG A+ G LQ GD++++V+G + +T ++A + L R+ +V L + +Q
Sbjct: 55 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 113
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV-RTGPIVTLEIAKQ 178
GIY+ V +GG A+ G LQ GD++++V+G + +T ++A + L R+ +V L + +Q
Sbjct: 54 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 112
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D GI+I ++ GG AD +G L+ GD+++ V+ L + E+AA L G VT+
Sbjct: 23 GGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTI 82
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
R+ I++ + G A A+GR++ GD+LL+++ Q L G + + A+ +++T P
Sbjct: 50 RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASA-IIKTAP 100
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 115 GQDRLG--IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQ 157
G D G I I +V+ G+AD +GRL GD+L+ VDG + G T
Sbjct: 28 GGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAK 177
GI+I +V GG A++ G L D++++V+G + G T ++ + +V I+T++ A
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPAN 126
Query: 178 Q 178
Q
Sbjct: 127 Q 127
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G+D GI+I ++ GG AD +G L+ GD+++ V+ L + E+AA L G VT+
Sbjct: 26 GGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTI 85
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 123 IKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
I ++ G AD +L+ GD++L V+GQS++ + + + G VTL I Q
Sbjct: 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQ 102
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
+L+ GD++L V+GQS++ + + + G VTL I Q
Sbjct: 60 AKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQ 102
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAK 177
GI+I +V GG A++ G L D++++V+G + G T ++ + +V + I+T++ A
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPAN 126
Query: 178 Q 178
Q
Sbjct: 127 Q 127
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 35.8 bits (81), Expect = 0.081, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 127 VKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQGA 180
V+ +A + LQAGD+++KVDGQ L TQ LVR P + LEI +QG+
Sbjct: 10 VQPNSAASKAGLQAGDRIVKVDGQPL---TQWVTFVMLVRDNPGKSLALEIERQGS 62
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQGA 332
LQAGD+++KVDGQ L TQ LVR P + LEI +QG+
Sbjct: 21 LQAGDRIVKVDGQPL---TQWVTFVMLVRDNPGKSLALEIERQGS 62
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 35.8 bits (81), Expect = 0.091, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 127 VKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQGA 180
V+ +A + LQAGD+++KVDGQ L TQ LVR P + LEI +QG+
Sbjct: 9 VQPNSAASKAGLQAGDRIVKVDGQPL---TQWVTFVMLVRDNPGKSLALEIERQGS 61
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQGA 332
LQAGD+++KVDGQ L TQ LVR P + LEI +QG+
Sbjct: 20 LQAGDRIVKVDGQPL---TQWVTFVMLVRDNPGKSLALEIERQGS 61
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGI 155
+ + +++ GG A +G+L GDQ++ ++G SLVG+
Sbjct: 218 VILANMMNGGPAARSGKLSIGDQIMSINGTSLVGL 252
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGI 307
++G+L GDQ++ ++G SLVG+
Sbjct: 231 RSGKLSIGDQIMSINGTSLVGL 252
>pdb|3ID4|A Chain A, Crystal Structure Of Rsep Pdz2 Domain Fused Gkaspv Peptide
Length = 93
Score = 35.4 bits (80), Expect = 0.100, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 127 VKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQGA 180
V+ +A + LQAGD+++KVDGQ L TQ LVR P + LEI +QG+
Sbjct: 9 VQPNSAASKAGLQAGDRIVKVDGQPL---TQWVTFVMLVRDNPGKSLALEIERQGS 61
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQGA 332
LQAGD+++KVDGQ L TQ LVR P + LEI +QG+
Sbjct: 20 LQAGDRIVKVDGQPL---TQWVTFVMLVRDNPGKSLALEIERQGS 61
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAK 177
GI+I +V GG A++ G L D++++V+G + G T ++ + +V + I+T++ A
Sbjct: 41 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPAN 100
Query: 178 Q 178
Q
Sbjct: 101 Q 101
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
GI+I +V GG A++ G L D++++V+G + G T ++ + +V
Sbjct: 39 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMV 84
>pdb|2ZPM|A Chain A, Crystal Structure Analysis Of Pdz Domain B
Length = 91
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 120 GIYIKSV---VKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLE 174
GI I+ V V+ +A + LQAGD+++ VDGQ L TQ LVR P + LE
Sbjct: 1 GIPIEPVLENVQPNSAASXAGLQAGDRIVXVDGQPL---TQWVTFVXLVRDNPGXSLALE 57
Query: 175 IAKQGA 180
I +QG+
Sbjct: 58 IERQGS 63
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQGA 332
LQAGD+++ VDGQ L TQ LVR P + LEI +QG+
Sbjct: 22 LQAGDRIVXVDGQPL---TQWVTFVXLVRDNPGXSLALEIERQGS 63
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIV 171
AG + +GI++ V++ A G L+ GDQ+L+V+ I +E+A +L+ G V
Sbjct: 18 AGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV 76
Query: 172 TLEIAKQGAIY 182
T+ K+ +Y
Sbjct: 77 TILAQKKKDVY 87
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIV 171
AG + +GI++ V++ A G L+ GDQ+L+V+ I +E+A +L+ G V
Sbjct: 26 AGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV 84
Query: 172 TLEIAKQGAIY 182
T+ K+ +Y
Sbjct: 85 TILAQKKKDVY 95
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 100 LRQEAK-LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQE 158
L+++A+ L +S G Q G+YI V A +G + AGD++ V+G+S+ G T+
Sbjct: 11 LQKDAQNLIGISIGGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 70
Query: 159 KAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQP 192
+ A+ + VT+ K A L L + P
Sbjct: 71 EVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGP 104
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 99 MLRQEAKLSEMSEEGAGQ-----DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLV 153
+LRQ L G G D GI+I V + G A A ++ GD+LL+V+G +L
Sbjct: 9 ILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPA-ARAGVRVGDKLLEVNGVALQ 67
Query: 154 GITQEKAAEYLVRTGPIVTLEIAKQ 178
G +A E L G V + + ++
Sbjct: 68 GAEHHEAVEALRGAGTAVQMRVWRE 92
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-PIV 171
G++ GI+IK V++ A L+ GD++L+V G L + +A E + G P+V
Sbjct: 46 GEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVV 103
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIV 171
AG + +GI++ V++ A G L+ GDQ+L+V+ I +E+A +L+ G V
Sbjct: 21 AGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV 79
Query: 172 TLEIAKQGAIY 182
T+ K+ +Y
Sbjct: 80 TILAQKKKDVY 90
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 99 MLRQEAKLSEMSEEGAGQ-----DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLV 153
+LRQ L G G D GI+I V + G A A ++ GD+LL+V+G +L
Sbjct: 21 ILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPA-ARAGVRVGDKLLEVNGVALQ 79
Query: 154 GITQEKAAEYLVRTGPIVTLEIAKQGAIYHG 184
G +A E L G V + + ++ G
Sbjct: 80 GAEHHEAVEALRGAGTAVQMRVWRESGPSSG 110
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIV 171
AG + +GI++ V++ A G L+ GDQ+L+V+ I +E+A +L+ G V
Sbjct: 46 AGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV 104
Query: 172 TLEIAKQGAIY 182
T+ K+ +Y
Sbjct: 105 TILAQKKKDVY 115
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDG 149
SM ++V L + AK S G + + +Y+ + + G A+ +G+++ GD++L+++G
Sbjct: 22 SMDFYTVE--LERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEING 79
Query: 150 QSLVGITQEKAAEYLVRTGPIVTL 173
++ + +A E + G V L
Sbjct: 80 ETTKNMKHSRAIELIKNGGRRVRL 103
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIV 171
AG + +GI++ V++ A G L+ GDQ+L+V+ I +E+A +L+ G V
Sbjct: 19 AGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV 77
Query: 172 TLEIAKQGAIY 182
T+ K+ +Y
Sbjct: 78 TILAQKKKDVY 88
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
GI+I +V GG A + G L D++L+V+G + G + ++ + ++
Sbjct: 66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMI 111
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAE 162
G GI++ +V G A G LQ D++++V+G+ L T ++A E
Sbjct: 37 GSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE 84
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
GI+IK +V A GRL+ GD++L ++G+ + T++ + + + LEI
Sbjct: 38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI 93
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVG 154
+ I +VKGGAA+ +G L GD++L+++G + G
Sbjct: 50 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRG 83
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQE-- 158
R E + E G G I +++ GG A+ +G L GD+L ++G SLVG+
Sbjct: 19 RGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAAC 78
Query: 159 KAAEYLVRTGPIVTLEI 175
+AA ++ VTL I
Sbjct: 79 QAAVRETKSQTSVTLSI 95
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 122 YIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
++ +V+ GGAAD G ++ GD++L+V+G ++ G T ++ + L+R G
Sbjct: 46 HVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVD-LIRAG 90
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGIT 156
I++K V +GG A G L GD+++KV+G+S++G T
Sbjct: 63 IFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKT 97
>pdb|1NTE|A Chain A, Crystal Structure Analysis Of The Second Pdz Domain Of
Syntenin
pdb|1R6J|A Chain A, Ultrahigh Resolution Crystal Structure Of Syntenin Pdz2
Length = 82
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 123 IKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
I S+VK +A NG L + + +++GQ+++G+ + A+ L +G +VT+ I
Sbjct: 27 ITSIVKDSSAARNGLLTEHN-ICEINGQNVIGLKDSQIADILSTSGTVVTITI 78
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 123 IKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
I S+VK +A NG L + + +++GQ+++G+ + A+ L +G +VT+ I
Sbjct: 111 ITSIVKDSSAARNGLLTEHN-ICEINGQNVIGLKDSQIADILSTSGTVVTITI 162
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 123 IKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
I S+VK +A NG L + + +++GQ+++G+ + A+ L +G +VT+ I
Sbjct: 111 ITSIVKDSSAARNGLLTEHN-ICEINGQNVIGLKDSQIADILSTSGTVVTITI 162
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
G +IK V KGG AD G L+ D +++V+G +++ EK + + +G VTL + +
Sbjct: 28 GSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKK 86
Query: 180 A 180
A
Sbjct: 87 A 87
>pdb|2KL1|A Chain A, Solution Structure Of Gtr34c From Geobacillus
Thermodenitrificans. Northeast Structural Genomics
Consortium Target Gtr34c
Length = 94
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSL 152
G+Y+ SV+ A GRL+AGD++ +DGQ +
Sbjct: 6 GVYVMSVLPN--MPAAGRLEAGDRIAAIDGQPI 36
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 122 YIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
++ +V+ GGAAD G ++ GD++L+V+G ++ G T ++ + L+R G
Sbjct: 46 HVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVD-LIRAG 90
>pdb|1OBY|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
A Syndecan-4 Peptide.
pdb|1OBY|B Chain B, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
A Syndecan-4 Peptide.
pdb|1OBX|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
An Interleukin 5 Receptor Alpha Peptide
Length = 79
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 123 IKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
I S+VK +A NG L + + +++GQ+++G+ + A+ L +G +VT+ I
Sbjct: 27 ITSIVKDSSAARNGLLTEHN-ICEINGQNVIGLKDSQIADILSTSGTVVTITI 78
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 32.7 bits (73), Expect = 0.78, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 94 HSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLV 153
HSVR +L S G + LGI++ V +G +A+ G L GD++ +V+G SL
Sbjct: 12 HSVRVEKSPAGRLG-FSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLE 69
Query: 154 GITQEKAAEYLVRT 167
T A + L +
Sbjct: 70 STTMGSAVKVLTSS 83
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 122 YIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
++ +V+ GGAAD G ++ GD++L+V+G ++ G T ++ + L+R G
Sbjct: 46 HVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVD-LIRAG 90
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
G +IK V KGG AD G L+ D +++V+G +++ EK + + +G VTL + +
Sbjct: 28 GSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKK 86
Query: 180 A 180
A
Sbjct: 87 A 87
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
+ I + KG A G L+ GD+LL +D L + E A + L + +V L+I K
Sbjct: 137 LVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRK 193
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEK 159
+G YI ++ GG+A+ G+L G Q+L+ +G L T E+
Sbjct: 49 IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEE 89
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
G +IK V KGG AD G L+ D +++V+G +++ EK + + +G VTL
Sbjct: 32 GSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTL 84
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 86 RLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLL 145
R S +K + LR+ ++ + G + + IKS+V G A +G+++ GD ++
Sbjct: 10 RNPSELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIV 69
Query: 146 KVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 177
V+ ++G T + + + G V LE+ +
Sbjct: 70 SVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 103
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 109 MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
+ EE R G ++ V G A G +QAGD+L+ V G+S+ G+ E+ + G
Sbjct: 20 LREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQG 78
Query: 169 PIVTLEI 175
V+L +
Sbjct: 79 SCVSLTV 85
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
+YI V A +G + AGD++ V+G+S+ G T+ + A+ + VT+ K A
Sbjct: 47 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQA 106
Query: 181 IYHGLATLLSQP 192
L L + P
Sbjct: 107 DPKQLEVLFNGP 118
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
I + + +GGAAD +G + GD+L +V+G + E+ + L ++ +T +I
Sbjct: 29 AIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKI 84
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 34/65 (52%)
Query: 100 LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEK 159
+++E L E G + + +V +GGAA+ +G + GD+++ ++G+ + T +
Sbjct: 24 IKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAE 83
Query: 160 AAEYL 164
A L
Sbjct: 84 AEAAL 88
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 125 SVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
SV G A G L+AGD + ++G+S++G+ E L+++G ++L
Sbjct: 40 SVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISL 87
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
Q L+AGD + ++G+S++G+ E L+++G ++L
Sbjct: 48 QEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISL 87
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
I I V+KGG A+ G+LQ D++ V+G S+ + A + L ++G + I ++
Sbjct: 41 IVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 96
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 95 SVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVG 154
S+ LR+ ++ + G + + IKS+V G A +G+++ GD ++ V+ ++G
Sbjct: 1 SIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLG 60
Query: 155 ITQEKAAEYL--VRTGPIVTLEIAK 177
T + + + G V LE+ +
Sbjct: 61 HTHAQVVKIFQSIPIGASVDLELCR 85
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 116 QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDG 149
+D +GIYI + A +GR++ GD++++++G
Sbjct: 45 EDDIGIYISEIDPNSIAAKDGRIREGDRIIQING 78
>pdb|2KJP|A Chain A, Solution Structure Of Protein Ylbl (Bsu15050) From
Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr713a
Length = 91
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAK 177
GIY SVV+ A G+++ GD+++ DG++ + EK +Y+ + G VTL+I +
Sbjct: 2 GIYASSVVEN--MPAKGKIEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIER 57
Query: 178 Q 178
+
Sbjct: 58 E 58
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 116 QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGI 155
+ R G YI+SV G A +G L+A D+L++V+GQ++ G+
Sbjct: 25 KSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGL 63
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
I I V+KGG A+ G+LQ D++ V+G S+ + A + L ++G + I ++
Sbjct: 41 IVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 96
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 118 RLG--IYIKSVVKGGAADANGRLQAGDQLLKVDG 149
RLG I++K + + G A +G L GD +LK++G
Sbjct: 18 RLGSQIFVKEMTRTGLATKDGNLHEGDIILKING 51
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 118 RLG--IYIKSVVKGGAADANGRLQAGDQLLKVDG 149
RLG I++K + + G A +G L GD +LK++G
Sbjct: 18 RLGSQIFVKEMTRTGLATKDGNLHEGDIILKING 51
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVD 148
SS S ++ + + A L E GA + I ++ +GG+A G+L+ G +L+V+
Sbjct: 2 SSGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVN 61
Query: 149 GQSLVGITQEKAAEYL 164
G +L G +AA +
Sbjct: 62 GLTLRGKEHREAARII 77
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
I I V+KGG A+ G+LQ D++ V+G S+ + A + L ++G + I ++
Sbjct: 44 IVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 99
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 100 LRQEAK-LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQE 158
L+++A+ L +S G Q +YI V A +G + AGD++ V+G+S+ G T+
Sbjct: 8 LQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 67
Query: 159 KAAEYLVRTGPIVTLEIAK 177
+ A+ + VT+ K
Sbjct: 68 EVAKMIQEVKGEVTIHYNK 86
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
I I V+KGG A+ G+LQ D++ V+G S+ + A + L ++G + I ++
Sbjct: 41 IVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 96
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 122 YIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
Y++SV +GG A G L+ GD L++V+GQ++V + + + + G + +++
Sbjct: 48 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 138 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
LQAGD L ++G S G T ++ + + +G ++T+E
Sbjct: 66 LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIE 102
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 326
LQAGD L ++G S G T ++ + + +G ++T+E
Sbjct: 66 LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIE 102
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 123 IKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKA 160
I + KG A++ + +Q GD++L++ G ++ G+T+ +A
Sbjct: 61 INRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEA 98
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
+YI V A +G + AGD++ V+G+S+ G T+ + A+ + VT+ K
Sbjct: 52 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 122 YIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
Y++SV +GG A G L+ GD L++V+GQ++V + + + + G + +++
Sbjct: 68 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 120
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 122 YIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
Y++SV +GG A G L+ GD L++V+GQ++V + + + + G + +++
Sbjct: 48 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 303 SLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQP 344
S + + E+ + LV +GP+ E ++G + HGL L QP
Sbjct: 158 SYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLT--LHQP 197
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEK 159
+LG YI+ V G A+ G L AGD+L++V+G+++ T ++
Sbjct: 26 KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQ 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.126 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,141,626
Number of Sequences: 62578
Number of extensions: 523691
Number of successful extensions: 1425
Number of sequences better than 100.0: 208
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 380
length of query: 684
length of database: 14,973,337
effective HSP length: 105
effective length of query: 579
effective length of database: 8,402,647
effective search space: 4865132613
effective search space used: 4865132613
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)