Query psy2533
Match_columns 684
No_of_seqs 316 out of 1896
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 18:38:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1892|consensus 100.0 1.2E-34 2.7E-39 326.8 27.7 186 7-196 824-1037(1629)
2 KOG3209|consensus 99.9 6.3E-25 1.4E-29 244.6 19.6 203 91-330 754-982 (984)
3 KOG3209|consensus 99.9 4.8E-21 1E-25 213.9 21.0 186 90-333 649-840 (984)
4 KOG3580|consensus 99.8 1.9E-18 4.2E-23 190.3 20.7 231 89-333 7-281 (1027)
5 KOG3580|consensus 99.6 1.2E-14 2.7E-19 160.7 18.0 241 86-337 195-496 (1027)
6 PF00595 PDZ: PDZ domain (Also 99.5 1.8E-13 4E-18 116.8 10.2 81 93-176 1-81 (81)
7 KOG3605|consensus 99.4 1.8E-13 3.9E-18 153.1 8.2 163 91-326 646-810 (829)
8 KOG3551|consensus 99.4 4.3E-12 9.3E-17 135.7 12.1 93 86-181 80-172 (506)
9 KOG3550|consensus 99.3 3.5E-12 7.6E-17 121.9 7.8 87 90-180 90-176 (207)
10 KOG3549|consensus 99.2 5.4E-11 1.2E-15 126.0 9.0 89 87-178 51-139 (505)
11 TIGR02037 degP_htrA_DO peripla 99.2 3.5E-10 7.6E-15 125.0 14.2 161 119-333 257-423 (428)
12 KOG1892|consensus 99.1 9.7E-11 2.1E-15 135.1 7.4 101 217-348 935-1037(1629)
13 PRK10942 serine endoprotease; 99.0 4.1E-09 8.9E-14 118.5 15.1 153 119-333 311-467 (473)
14 PRK10139 serine endoprotease; 99.0 5.3E-09 1.2E-13 117.1 15.3 156 119-333 290-449 (455)
15 cd00992 PDZ_signaling PDZ doma 99.0 5.1E-09 1.1E-13 88.4 10.8 80 92-175 2-81 (82)
16 PRK10779 zinc metallopeptidase 98.9 7.5E-09 1.6E-13 115.5 13.8 151 121-333 128-281 (449)
17 smart00228 PDZ Domain present 98.9 1.1E-08 2.4E-13 86.2 11.2 82 92-178 3-84 (85)
18 KOG3553|consensus 98.9 3.6E-10 7.9E-15 101.6 1.6 92 86-179 11-117 (124)
19 cd00136 PDZ PDZ domain, also c 98.8 1.9E-08 4.1E-13 82.9 8.6 68 102-175 1-69 (70)
20 PF00595 PDZ: PDZ domain (Also 98.8 1.4E-08 3.1E-13 86.6 6.7 55 273-328 25-81 (81)
21 KOG3571|consensus 98.7 3.6E-08 7.9E-13 109.0 9.0 89 91-180 250-341 (626)
22 KOG3550|consensus 98.7 4.6E-08 1E-12 94.0 7.5 61 273-333 115-177 (207)
23 TIGR00054 RIP metalloprotease 98.6 2.4E-07 5.1E-12 102.9 12.9 133 119-333 128-263 (420)
24 PF13180 PDZ_2: PDZ domain; PD 98.6 1.4E-07 3.1E-12 81.0 7.0 73 103-182 2-76 (82)
25 KOG3551|consensus 98.5 4.5E-07 9.8E-12 97.9 10.8 58 272-329 109-168 (506)
26 cd00988 PDZ_CTP_protease PDZ d 98.4 8.6E-07 1.9E-11 75.7 8.4 70 102-178 2-72 (85)
27 KOG3651|consensus 98.4 8.8E-07 1.9E-11 93.2 8.9 84 91-177 5-88 (429)
28 KOG3552|consensus 98.4 2.9E-07 6.4E-12 107.2 5.6 79 89-178 54-132 (1298)
29 smart00228 PDZ Domain present 98.1 1.2E-05 2.7E-10 67.6 8.1 57 273-330 26-84 (85)
30 KOG3549|consensus 98.1 7.2E-06 1.6E-10 87.9 7.1 57 274-330 81-139 (505)
31 cd00990 PDZ_glycyl_aminopeptid 98.0 1.8E-05 4E-10 66.9 8.0 68 104-181 3-70 (80)
32 cd00991 PDZ_archaeal_metallopr 98.0 1.8E-05 4E-10 67.8 7.8 60 119-181 10-71 (79)
33 cd00136 PDZ PDZ domain, also c 98.0 2.2E-05 4.8E-10 64.6 7.6 54 273-327 13-69 (70)
34 KOG3606|consensus 98.0 9.2E-06 2E-10 84.7 6.3 85 91-175 159-250 (358)
35 KOG3571|consensus 98.0 1.4E-05 3.1E-10 88.9 7.2 61 269-329 273-338 (626)
36 KOG0609|consensus 97.9 2.2E-05 4.8E-10 88.3 8.5 85 89-178 121-205 (542)
37 PLN00049 carboxyl-terminal pro 97.9 3.3E-05 7.2E-10 85.2 9.5 80 100-180 83-163 (389)
38 cd00992 PDZ_signaling PDZ doma 97.9 4.5E-05 9.7E-10 64.3 7.7 54 273-327 26-81 (82)
39 cd00989 PDZ_metalloprotease PD 97.9 6.2E-05 1.3E-09 63.2 8.5 59 119-180 12-71 (79)
40 cd00986 PDZ_LON_protease PDZ d 97.9 6.1E-05 1.3E-09 64.1 8.1 58 120-181 9-68 (79)
41 KOG3542|consensus 97.9 2.2E-05 4.7E-10 89.6 6.6 85 90-179 535-620 (1283)
42 KOG4371|consensus 97.9 6.1E-05 1.3E-09 89.4 10.5 171 101-330 1157-1329(1332)
43 TIGR00225 prc C-terminal pepti 97.8 5.5E-05 1.2E-09 81.5 8.6 73 101-180 50-123 (334)
44 COG0793 Prc Periplasmic protea 97.8 4.8E-05 1E-09 84.6 8.1 74 100-179 98-172 (406)
45 cd00987 PDZ_serine_protease PD 97.8 5.7E-05 1.2E-09 64.8 6.5 59 119-180 24-84 (90)
46 PF13180 PDZ_2: PDZ domain; PD 97.7 5.5E-05 1.2E-09 65.0 5.4 59 273-334 14-76 (82)
47 KOG3553|consensus 97.6 9.3E-06 2E-10 73.6 -0.4 58 271-330 57-116 (124)
48 cd00988 PDZ_CTP_protease PDZ d 97.6 0.00021 4.6E-09 61.0 7.8 57 273-330 13-72 (85)
49 PRK11186 carboxy-terminal prot 97.6 0.00011 2.3E-09 86.3 7.8 72 101-178 243-320 (667)
50 KOG3651|consensus 97.5 0.00015 3.3E-09 76.8 6.6 60 270-329 27-88 (429)
51 cd00991 PDZ_archaeal_metallopr 97.4 0.00061 1.3E-08 58.4 8.2 59 271-332 8-70 (79)
52 KOG4407|consensus 97.4 0.00032 7E-09 84.9 7.2 135 89-331 44-202 (1973)
53 KOG3606|consensus 97.2 0.001 2.2E-08 69.9 8.4 58 272-329 193-252 (358)
54 TIGR01713 typeII_sec_gspC gene 97.2 0.0009 1.9E-08 70.4 7.7 73 103-181 178-252 (259)
55 KOG3605|consensus 97.2 0.0003 6.6E-09 80.6 3.9 71 92-173 738-809 (829)
56 cd00986 PDZ_LON_protease PDZ d 97.2 0.0017 3.7E-08 55.2 7.7 58 273-334 8-69 (79)
57 cd00987 PDZ_serine_protease PD 97.1 0.0013 2.9E-08 56.3 6.8 57 273-332 24-84 (90)
58 PRK10898 serine endoprotease; 97.1 0.00097 2.1E-08 72.9 7.1 61 119-182 279-341 (353)
59 cd00990 PDZ_glycyl_aminopeptid 97.1 0.0013 2.9E-08 55.5 6.2 58 272-333 11-70 (80)
60 cd00989 PDZ_metalloprotease PD 97.0 0.0034 7.4E-08 52.6 8.4 56 274-332 13-71 (79)
61 TIGR02038 protease_degS peripl 97.0 0.0011 2.3E-08 72.3 6.4 60 119-181 278-339 (351)
62 PRK10942 serine endoprotease; 97.0 0.0017 3.7E-08 73.7 7.6 59 119-180 408-466 (473)
63 COG0793 Prc Periplasmic protea 96.9 0.0017 3.8E-08 72.3 7.4 58 273-331 112-172 (406)
64 TIGR02037 degP_htrA_DO peripla 96.9 0.0014 3E-08 73.1 6.6 60 119-181 362-423 (428)
65 PRK10139 serine endoprotease; 96.9 0.0018 3.9E-08 73.1 7.5 59 119-180 390-448 (455)
66 TIGR00054 RIP metalloprotease 96.7 0.0036 7.8E-08 69.9 7.2 60 119-181 203-263 (420)
67 KOG3938|consensus 96.7 0.0026 5.7E-08 66.7 5.6 80 91-176 127-208 (334)
68 PLN00049 carboxyl-terminal pro 96.7 0.0051 1.1E-07 68.1 8.2 58 274-332 103-163 (389)
69 TIGR00225 prc C-terminal pepti 96.6 0.005 1.1E-07 66.5 7.4 58 274-332 63-123 (334)
70 PRK11186 carboxy-terminal prot 96.6 0.0045 9.8E-08 73.0 7.3 58 273-330 255-320 (667)
71 PRK10779 zinc metallopeptidase 96.5 0.0052 1.1E-07 69.1 7.3 59 120-181 222-281 (449)
72 KOG3552|consensus 96.5 0.0032 6.8E-08 74.8 5.3 44 287-330 89-132 (1298)
73 KOG0606|consensus 96.3 0.014 3E-07 71.1 9.0 80 95-177 630-715 (1205)
74 PF04495 GRASP55_65: GRASP55/6 96.2 0.016 3.5E-07 55.8 7.5 76 101-179 25-102 (138)
75 COG3975 Predicted protease wit 96.1 0.014 3E-07 66.5 7.6 71 101-186 450-520 (558)
76 KOG0609|consensus 96.1 0.0069 1.5E-07 68.8 5.0 57 274-330 147-205 (542)
77 KOG3542|consensus 95.8 0.0075 1.6E-07 69.7 3.8 60 268-329 557-618 (1283)
78 KOG1738|consensus 95.7 0.019 4.1E-07 66.4 6.7 77 99-180 210-286 (638)
79 TIGR01713 typeII_sec_gspC gene 95.7 0.022 4.7E-07 60.1 6.4 58 273-333 191-252 (259)
80 TIGR02038 protease_degS peripl 95.3 0.034 7.3E-07 60.8 6.5 58 273-333 278-339 (351)
81 TIGR03279 cyano_FeS_chp putati 95.2 0.021 4.6E-07 64.2 4.9 49 123-176 2-50 (433)
82 PRK10898 serine endoprotease; 95.2 0.034 7.5E-07 60.9 6.5 60 272-334 278-341 (353)
83 COG0265 DegQ Trypsin-like seri 95.0 0.047 1E-06 59.1 6.6 62 119-181 270-331 (347)
84 TIGR02860 spore_IV_B stage IV 94.9 0.084 1.8E-06 59.0 8.4 70 101-181 95-173 (402)
85 KOG1421|consensus 94.7 0.13 2.9E-06 60.2 9.2 58 120-181 304-362 (955)
86 PF14685 Tricorn_PDZ: Tricorn 94.1 0.27 5.9E-06 44.1 8.2 59 120-180 13-81 (88)
87 KOG3129|consensus 93.8 0.12 2.6E-06 53.0 5.9 61 120-181 140-202 (231)
88 PRK09681 putative type II secr 93.1 0.16 3.4E-06 54.3 5.7 55 125-182 210-269 (276)
89 KOG3532|consensus 92.9 0.25 5.4E-06 57.9 7.4 73 98-178 382-454 (1051)
90 TIGR02860 spore_IV_B stage IV 92.4 0.26 5.6E-06 55.2 6.6 49 282-333 124-173 (402)
91 PF14685 Tricorn_PDZ: Tricorn 92.2 0.32 6.8E-06 43.6 5.6 42 289-332 39-81 (88)
92 COG3480 SdrC Predicted secrete 92.2 0.25 5.4E-06 53.6 5.7 56 120-179 131-188 (342)
93 KOG4371|consensus 91.3 0.26 5.6E-06 60.0 5.3 86 89-178 1244-1329(1332)
94 KOG3938|consensus 91.2 0.24 5.1E-06 52.6 4.3 61 276-336 152-216 (334)
95 PRK09681 putative type II secr 90.4 0.43 9.3E-06 51.1 5.4 48 285-334 220-269 (276)
96 COG0265 DegQ Trypsin-like seri 88.6 0.89 1.9E-05 49.3 6.4 63 271-334 268-332 (347)
97 TIGR03279 cyano_FeS_chp putati 88.3 0.6 1.3E-05 52.8 4.9 42 282-328 9-50 (433)
98 KOG1320|consensus 88.2 1.1 2.5E-05 51.1 7.0 58 120-180 399-458 (473)
99 KOG0606|consensus 87.4 0.83 1.8E-05 56.4 5.6 46 284-329 670-715 (1205)
100 KOG1421|consensus 85.5 3.2 6.9E-05 49.3 8.7 136 120-322 772-909 (955)
101 COG3480 SdrC Predicted secrete 84.2 1.7 3.6E-05 47.5 5.4 59 273-333 130-190 (342)
102 KOG1320|consensus 83.4 3.5 7.5E-05 47.3 7.8 57 273-331 398-457 (473)
103 KOG4407|consensus 82.5 0.48 1E-05 58.9 0.6 59 120-179 144-202 (1973)
104 KOG1738|consensus 81.4 1.9 4.1E-05 50.6 4.8 58 275-332 227-286 (638)
105 KOG3129|consensus 78.6 5.5 0.00012 41.3 6.5 62 272-334 138-203 (231)
106 COG3031 PulC Type II secretory 78.4 3.1 6.7E-05 43.9 4.8 50 129-181 217-268 (275)
107 KOG3834|consensus 71.5 26 0.00056 39.9 10.0 61 119-180 15-75 (462)
108 COG3975 Predicted protease wit 67.2 8.1 0.00018 44.9 5.1 53 273-334 462-516 (558)
109 KOG3532|consensus 65.2 12 0.00027 44.6 6.1 45 282-329 409-453 (1051)
110 PF12812 PDZ_1: PDZ-like domai 64.7 12 0.00025 32.8 4.6 46 121-169 32-77 (78)
111 KOG1945|consensus 62.5 4.2 9.1E-05 44.9 1.7 80 98-177 106-188 (377)
112 COG3031 PulC Type II secretory 61.7 13 0.00027 39.5 4.9 45 286-332 221-267 (275)
113 KOG0792|consensus 53.8 5.4 0.00012 49.4 0.8 69 101-169 715-799 (1144)
114 PF04495 GRASP55_65: GRASP55/6 48.1 42 0.00091 32.5 5.7 56 273-331 43-102 (138)
115 COG0750 Predicted membrane-ass 47.4 32 0.00068 37.5 5.4 53 122-177 132-188 (375)
116 PF12812 PDZ_1: PDZ-like domai 46.9 25 0.00054 30.8 3.7 45 274-320 32-76 (78)
117 KOG3834|consensus 42.5 84 0.0018 36.0 7.7 87 91-180 78-169 (462)
118 KOG1703|consensus 24.7 31 0.00068 39.6 0.8 73 103-180 9-81 (479)
119 PRK13810 orotate phosphoribosy 24.6 1.3E+02 0.0027 30.6 5.1 37 287-323 116-152 (187)
120 COG0750 Predicted membrane-ass 22.5 1.4E+02 0.003 32.5 5.3 45 282-329 140-188 (375)
121 PRK13810 orotate phosphoribosy 21.5 1.3E+02 0.0027 30.6 4.3 38 135-172 116-153 (187)
No 1
>KOG1892|consensus
Probab=100.00 E-value=1.2e-34 Score=326.76 Aligned_cols=186 Identities=43% Similarity=0.685 Sum_probs=135.9
Q ss_pred HHHHHHHHhhccccHHHHHhhhhccccceeeecCcccCCCcccCCCCccccCCCCCCC---------CCCC-------CC
Q psy2533 7 RDMLRQEAKLSEMSEEEIHRNQEIHRNQQEMHNGYVDKSPTQLHKGYSTQVLNRPPPG---------PERG-------DR 70 (684)
Q Consensus 7 ~~~~~q~~k~~~~~~ee~~r~~EI~i~~Qe~~~g~v~~~~~rl~~G~s~q~l~~~pp~---------P~~~-------~~ 70 (684)
+|+++-.-.+||.++||+.|.-. ..||-...-.+.--.+-+++||+|.++|.-|-. ...+ ..
T Consensus 824 ~dlvd~v~r~AE~~ADeLtr~DG--reV~LEEspeL~LpfLlP~DGyscdvvR~iP~GL~~fL~pLqqrg~Crl~~~p~s 901 (1629)
T KOG1892|consen 824 TDLVDNVVRVAENTADELTRSDG--REVQLEESPELQLPFLLPEDGYSCDVVRNIPNGLQEFLDPLQQRGFCRLIPHPRS 901 (1629)
T ss_pred hHHHHHHHHHHHhhhhHhhhccC--ceeecccCcccccceeecCCCceeeeeccCChhHHHHHHHHHhccceeecCCCCC
Confidence 67888888999999999998754 222222222222223556999999998865421 0000 01
Q ss_pred CC--CCCCCC--CC--------CCCCCCCCCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCcc
Q psy2533 71 PA--SAYLPN--YP--------GTPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRL 138 (684)
Q Consensus 71 ps--s~~~p~--~~--------~sp~~~~~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrL 138 (684)
|. +.|.-. +. -..+...+....+|++.| +.|+|++|+..+|.+...+||||++|++||+|+.+|||
T Consensus 902 pg~wT~ymh~~~~~ss~a~~n~l~q~~~~~pei~~vtL~K--nnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL 979 (1629)
T KOG1892|consen 902 PGTWTIYMHGADYESSLARENELAQPLRKEPEIITVTLKK--NNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRL 979 (1629)
T ss_pred CceeEEEeeccccccchhhhhhccchhhcCCceEEEEEec--cCCceEEEEeeccCCccccceEEEEeccCCcccccccc
Confidence 10 000000 00 001111222344555544 59999999999998888899999999999999999999
Q ss_pred ccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCccccccccccCCCCCcc
Q psy2533 139 QAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVM 196 (684)
Q Consensus 139 qvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~~~~~stl~s~psP~~ 196 (684)
..||+||.|||+++.|++.+.|..++..+|..|+|.|..++.+++...++..+|+|..
T Consensus 980 ~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKqgAiyhGLatlL~qpsP~~ 1037 (1629)
T KOG1892|consen 980 EAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQGAIYHGLATLLGQPSPTT 1037 (1629)
T ss_pred ccCceeeeecCcccccccHHHHHHHHhccCCeEEEehhhhhhHHHHHHHHhcCCCcch
Confidence 9999999999999999999999999999999999999999999999999888888876
No 2
>KOG3209|consensus
Probab=99.93 E-value=6.3e-25 Score=244.57 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=150.7
Q ss_pred ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533 91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170 (684)
Q Consensus 91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~ 170 (684)
.-.|.+.|+.++||||.|......+. --|.+|++|+||++||+|++||+|++|||+++.+++|.+.|.+||.+|-+
T Consensus 754 ~yDV~lhR~ENeGFGFVi~sS~~kp~----sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGls 829 (984)
T KOG3209|consen 754 PYDVVLHRKENEGFGFVIMSSQNKPE----SGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLS 829 (984)
T ss_pred CeeeEEecccCCceeEEEEecccCCC----CCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCce
Confidence 34588899999999999997655442 22999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCccccccc----c----ccCCCCCccc---cCCC-----cc-cc--ccc-----cccccccccccccccCCC
Q psy2533 171 VTLEIAKQGAIYHGLA----T----LLSQPSPVMT---RGQV-----KT-YE--STI-----SVQQRKERSSQNLHDMNN 226 (684)
Q Consensus 171 V~LvV~R~~~~~~~~s----t----l~s~psP~~~---s~~~-----~~-se--s~l-----s~~~~~~~~sv~L~k~s~ 226 (684)
|+|+|.-.......+. . .....+..+. .++. .. .. ... ...+....+.+.+.++..
T Consensus 830 VtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~k 909 (984)
T KOG3209|consen 830 VTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGAK 909 (984)
T ss_pred EEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeecccc
Confidence 9999986543211100 0 0000000000 0000 00 00 000 112233456788999999
Q ss_pred CCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEec
Q psy2533 227 GVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSL 304 (684)
Q Consensus 227 GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl 304 (684)
||||+++. |. ....+.||-.|. |+|.++|++++||+|++|||+++
T Consensus 910 GFGFSiRG----Gr-----------------------------eynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesT 956 (984)
T KOG3209|consen 910 GFGFSIRG----GR-----------------------------EYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGEST 956 (984)
T ss_pred ccceEeec----cc-----------------------------ccccceEEEEeccCCCccccCceeecceEEEecCccc
Confidence 99999982 21 123467888887 99999999999999999999999
Q ss_pred CCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533 305 VGITQEKAAEYLVRTGPIVTLEIAKQ 330 (684)
Q Consensus 305 ~g~Th~eAv~lLk~sg~~VtL~V~R~ 330 (684)
.+|+|..|+++||+.+..|.|++.|.
T Consensus 957 kgmtH~rAIelIk~gg~~vll~Lr~g 982 (984)
T KOG3209|consen 957 KGMTHDRAIELIKQGGRRVLLLLRRG 982 (984)
T ss_pred CCCcHHHHHHHHHhCCeEEEEEeccC
Confidence 99999999999999998888887654
No 3
>KOG3209|consensus
Probab=99.87 E-value=4.8e-21 Score=213.87 Aligned_cols=186 Identities=24% Similarity=0.360 Sum_probs=140.6
Q ss_pred CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--
Q psy2533 90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-- 167 (684)
Q Consensus 90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-- 167 (684)
....|.++| ...||||.|.||.+.+ .+|||..|++.|+|+.+|||+.||.|+.|+|++|.+.+|.+||.+|..+
T Consensus 649 k~ldV~L~r-kesGFGFRiLGG~ep~---qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AAr 724 (984)
T KOG3209|consen 649 KELDVFLRR-KESGFGFRILGGDEPG---QPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAAR 724 (984)
T ss_pred cceeEEEEe-eccccceEEecCCCCC---CeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHh
Confidence 455555654 5679999999997755 5899999999999999999999999999999999999999999999865
Q ss_pred CCEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccccccc-cCCCCCCCCCCCCCC-CCCCcccc
Q psy2533 168 GPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLH-DMNNGVGGSHHPAPG-PGSGMNHH 245 (684)
Q Consensus 168 g~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~-k~s~GlGfSi~~~~g-~G~Gi~ik 245 (684)
.+.|.|+|+|...-.. ...+|.....+.. .+.+.++ +-..||||.+..... ++.|
T Consensus 725 nghV~LtVRRkv~~~~------~~rsp~~s~~~~~-------------~yDV~lhR~ENeGFGFVi~sS~~kp~sg---- 781 (984)
T KOG3209|consen 725 NGHVNLTVRRKVRTGP------ARRSPRNSAAPSG-------------PYDVVLHRKENEGFGFVIMSSQNKPESG---- 781 (984)
T ss_pred cCceEEEEeeeeeecc------ccCCcccccCCCC-------------CeeeEEecccCCceeEEEEecccCCCCC----
Confidence 5679999988643211 1112222111111 1223333 356789988763211 1111
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeE
Q psy2533 246 PVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 323 (684)
Q Consensus 246 pIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~V 323 (684)
|-.|+ ++|++||+|++||+|++|||+++.+++|.+.+.+||.+|-.|
T Consensus 782 -------------------------------iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsV 830 (984)
T KOG3209|consen 782 -------------------------------IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSV 830 (984)
T ss_pred -------------------------------ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceE
Confidence 22333 689999999999999999999999999999999999999999
Q ss_pred EEEEEeCCcc
Q psy2533 324 TLEIAKQGAI 333 (684)
Q Consensus 324 tL~V~R~~~~ 333 (684)
+|.|+.++..
T Consensus 831 tLtIip~ee~ 840 (984)
T KOG3209|consen 831 TLTIIPPEEA 840 (984)
T ss_pred EEEEcChhcc
Confidence 9999976543
No 4
>KOG3580|consensus
Probab=99.80 E-value=1.9e-18 Score=190.30 Aligned_cols=231 Identities=19% Similarity=0.293 Sum_probs=147.6
Q ss_pred CCceEEEEEecCCCcccEEEEeccCCCC---CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH
Q psy2533 89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQ---DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165 (684)
Q Consensus 89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~---~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk 165 (684)
....+|++.|.+..||||.|.||++.+. +...|+|+.|.||||| .|+|+.||+|+.|||+++.+..|.-||+.|+
T Consensus 7 WEQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQqLr 84 (1027)
T KOG3580|consen 7 WEQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQLR 84 (1027)
T ss_pred hhhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHHHH
Confidence 3456899999999999999999999875 4668999999999999 6999999999999999999999999999999
Q ss_pred cCCCEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccc---------------------cccccC
Q psy2533 166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSS---------------------QNLHDM 224 (684)
Q Consensus 166 ~sg~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~s---------------------v~L~k~ 224 (684)
.++....++|.|........ ..++|.... +.......-...++..... ......
T Consensus 85 ksgK~A~ItvkRprkvqvpa----~~asPp~s~-~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~ 159 (1027)
T KOG3580|consen 85 KSGKVAAITVKRPRKVQVPA----LQASPPLSQ-DDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPH 159 (1027)
T ss_pred hhccceeEEecccceeeccc----cCCCCCCCC-ccccccchhccCcccccccccccccccccCCcccccccccccCCcc
Confidence 99999999998876542211 122221110 0000000000000100000 000000
Q ss_pred CC----CCCCCCCCCCCCCC-CcccccccccccCCCCCCCCCCCCCCC-------------CCCCCCCcEEEecc--hhh
Q psy2533 225 NN----GVGGSHHPAPGPGS-GMNHHPVVSRQASTPSLPQASPYPAPA-------------PAPADPERFYQNLS--VYR 284 (684)
Q Consensus 225 s~----GlGfSi~~~~g~G~-Gi~ikpIv~~~~~t~slp~~sl~~gs~-------------~~~~d~GIFV~sI~--GaA 284 (684)
.. .-+++. ..+|+.. +..+ ... ...+|.-..-++.. +-.....|||+.|. |.|
T Consensus 160 ~R~rsrer~ls~-~~~gprs~~r~~---~ss---~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLA 232 (1027)
T KOG3580|consen 160 ERARSRERDLSR-DRRGPRSRSREH---PSS---RSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLA 232 (1027)
T ss_pred cccccccccccc-CCCCCccccccc---ccC---CCCCCCccCCCCcceEEEEeeccchhhcccccchhhhhhhcccchh
Confidence 00 000000 0000000 0000 000 00000000000000 00124568999998 999
Q ss_pred hhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333 (684)
Q Consensus 285 ardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~ 333 (684)
+++|+|+.||.||.|||+..++|++.+|..+|..+..++.|+|.|....
T Consensus 233 ardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~q 281 (1027)
T KOG3580|consen 233 ARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQ 281 (1027)
T ss_pred hccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCc
Confidence 9999999999999999999999999999999999999999999997543
No 5
>KOG3580|consensus
Probab=99.61 E-value=1.2e-14 Score=160.68 Aligned_cols=241 Identities=20% Similarity=0.257 Sum_probs=143.3
Q ss_pred CCCCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH
Q psy2533 86 RLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165 (684)
Q Consensus 86 ~~~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk 165 (684)
......+.+.+..+.++.||+.+.. -|||+.|...|.|+++|.|+.||.||.|||+...+|+..+|..+|.
T Consensus 195 ~~~~p~kv~LvKsR~nEEyGlrLgS---------qIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIE 265 (1027)
T KOG3580|consen 195 GRPGPIKVLLVKSRANEEYGLRLGS---------QIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIE 265 (1027)
T ss_pred CCCCcceEEEEeeccchhhcccccc---------hhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHH
Confidence 3344566666777789999998852 4999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEEecCcccccccc--------------------ccCCCCCccccCCCcccc---cccccccccccc-cccc
Q psy2533 166 RTGPIVTLEIAKQGAIYHGLAT--------------------LLSQPSPVMTRGQVKTYE---STISVQQRKERS-SQNL 221 (684)
Q Consensus 166 ~sg~~V~LvV~R~~~~~~~~st--------------------l~s~psP~~~s~~~~~se---s~ls~~~~~~~~-sv~L 221 (684)
++.+.+.|+|.|+......... ....|++........... ..++..+..... ...+
T Consensus 266 kS~GKL~lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~ 345 (1027)
T KOG3580|consen 266 KSRGKLQLVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRL 345 (1027)
T ss_pred hccCceEEEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhc
Confidence 9999999999997533211100 001111111100000000 011110000000 0000
Q ss_pred ---------ccCCCCCCCCCCC-------------CCCCC--CCcccccc----cccccC--C---CCCCCCCCCCCCCC
Q psy2533 222 ---------HDMNNGVGGSHHP-------------APGPG--SGMNHHPV----VSRQAS--T---PSLPQASPYPAPAP 268 (684)
Q Consensus 222 ---------~k~s~GlGfSi~~-------------~~g~G--~Gi~ikpI----v~~~~~--t---~slp~~sl~~gs~~ 268 (684)
++.......+..+ .+.+. ....+.|- .+.... + --..+.+++... +
T Consensus 346 s~~gat~tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~KGdSvGLRL-A 424 (1027)
T KOG3580|consen 346 SRMGATPTPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKKGDSVGLRL-A 424 (1027)
T ss_pred ccCCCCCCCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeecCCeeeeEe-c
Confidence 0000000000000 00000 00000000 000000 0 000011111112 2
Q ss_pred CCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcccccc
Q psy2533 269 APADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIYHGL 337 (684)
Q Consensus 269 ~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~~~~ 337 (684)
++++.||||..|. ++|++.| |+.|||||.||.++++++..++||..|-. .|..|+|+.++....|+.+
T Consensus 425 GGNDVGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~i 496 (1027)
T KOG3580|consen 425 GGNDVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRDI 496 (1027)
T ss_pred cCCceeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHHH
Confidence 4689999999998 6888887 99999999999999999999999999987 4678999998877666543
No 6
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.48 E-value=1.8e-13 Score=116.77 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=74.2
Q ss_pred EEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEE
Q psy2533 93 SHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172 (684)
Q Consensus 93 ~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~ 172 (684)
+|++.|....+|||.+.++.+.. ..++||..|.++|||+++| |++||+|++|||.++.+++|.+++.+|+.+++.|+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~ 77 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVT 77 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEE
Confidence 46788888999999999987653 4589999999999999999 99999999999999999999999999999999999
Q ss_pred EEEE
Q psy2533 173 LEIA 176 (684)
Q Consensus 173 LvV~ 176 (684)
|+|+
T Consensus 78 L~V~ 81 (81)
T PF00595_consen 78 LTVQ 81 (81)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9884
No 7
>KOG3605|consensus
Probab=99.43 E-value=1.8e-13 Score=153.12 Aligned_cols=163 Identities=21% Similarity=0.310 Sum_probs=123.8
Q ss_pred ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--C
Q psy2533 91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--G 168 (684)
Q Consensus 91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g 168 (684)
-+.|.|.|..++.||+.|+- .+|+..-+.++|.....+|||+++|.|-+||+|++|||.+|.+++...+..+||.. +
T Consensus 646 qKEVvv~K~kGEiLGVViVE-SGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQ 724 (829)
T KOG3605|consen 646 QKEVVLEKHKGEILGVVIVE-SGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 724 (829)
T ss_pred cceeeeecccCceeeEEEEe-cCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccccc
Confidence 47888999999999999885 34554456789999999999999999999999999999999999999999999976 5
Q ss_pred CEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCccccccc
Q psy2533 169 PIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVV 248 (684)
Q Consensus 169 ~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv 248 (684)
..|+|.|.++++....... .| +..--|||++. .-+
T Consensus 725 T~VkltiV~cpPV~~V~I~-----RP----------------------------d~kyQLGFSVQ------------NGi 759 (829)
T KOG3605|consen 725 TAVKLNIVSCPPVTTVLIR-----RP----------------------------DLRYQLGFSVQ------------NGI 759 (829)
T ss_pred ceEEEEEecCCCceEEEee-----cc----------------------------cchhhccceee------------CcE
Confidence 6799999998765322110 00 01112555553 112
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCcEEEecchhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEE
Q psy2533 249 SRQASTPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 326 (684)
Q Consensus 249 ~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~ 326 (684)
+|.. .. |.-|..|++|+|-||++|||++|....|+..|.+|..+-..+.++
T Consensus 760 ICSL----------lR-----------------GGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMK 810 (829)
T KOG3605|consen 760 ICSL----------LR-----------------GGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMK 810 (829)
T ss_pred eehh----------hc-----------------ccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhh
Confidence 2211 11 222556779999999999999999999999999999876655544
No 8
>KOG3551|consensus
Probab=99.35 E-value=4.3e-12 Score=135.71 Aligned_cols=93 Identities=27% Similarity=0.314 Sum_probs=85.3
Q ss_pred CCCCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH
Q psy2533 86 RLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165 (684)
Q Consensus 86 ~~~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk 165 (684)
......+.|.|+|...+||||+|.||+++. .||+|++|.+|-+|++.+-|.+||.||+|||.++.+.+|++||+.||
T Consensus 80 ~~~~~~R~V~V~K~d~gGLGISIKGGreNk---MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLK 156 (506)
T KOG3551|consen 80 NEAEAERRVRVVKQDAGGLGISIKGGRENK---MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALK 156 (506)
T ss_pred hhhcccceeEEEEecCCcceEEeecCcccC---CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHH
Confidence 444567999999999999999999998876 69999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEEecCcc
Q psy2533 166 RTGPIVTLEIAKQGAI 181 (684)
Q Consensus 166 ~sg~~V~LvV~R~~~~ 181 (684)
.+|..|.|.|......
T Consensus 157 raGkeV~levKy~REv 172 (506)
T KOG3551|consen 157 RAGKEVLLEVKYMREV 172 (506)
T ss_pred hhCceeeeeeeeehhc
Confidence 9999999999865443
No 9
>KOG3550|consensus
Probab=99.31 E-value=3.5e-12 Score=121.88 Aligned_cols=87 Identities=30% Similarity=0.387 Sum_probs=77.2
Q ss_pred CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533 90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169 (684)
Q Consensus 90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~ 169 (684)
+.+.|.+- +..+||||.|.||+... .||||++|+|||.|++.|.|+.||++|+|||+++++-.|+.||.+||.+.+
T Consensus 90 hprvvelp-ktdeglgfnvmggkeqn---spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~g 165 (207)
T KOG3550|consen 90 HPRVVELP-KTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVG 165 (207)
T ss_pred CCceeecC-ccccccceeeccCcccC---CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcC
Confidence 44555553 46889999999998754 589999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCc
Q psy2533 170 IVTLEIAKQGA 180 (684)
Q Consensus 170 ~V~LvV~R~~~ 180 (684)
.|.|+|..-+.
T Consensus 166 svklvvrytpk 176 (207)
T KOG3550|consen 166 SVKLVVRYTPK 176 (207)
T ss_pred cEEEEEecChH
Confidence 99999987653
No 10
>KOG3549|consensus
Probab=99.18 E-value=5.4e-11 Score=125.97 Aligned_cols=89 Identities=26% Similarity=0.350 Sum_probs=83.5
Q ss_pred CCCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc
Q psy2533 87 LDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166 (684)
Q Consensus 87 ~~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~ 166 (684)
..+.+++|+|+|.+-+|||++|.||..+. .||+|++|..+-+|+..|.|.+||-||+|||+.++.++|+++|.+|++
T Consensus 51 ~~s~eRtVtirRQ~vGGlGLSIKGGaEHn---~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRN 127 (505)
T KOG3549|consen 51 MESKERTVTIRRQKVGGLGLSIKGGAEHN---LPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRN 127 (505)
T ss_pred ccCCceeEEEEeeecCcceeeeccccccC---ccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHh
Confidence 45789999999999999999999997765 589999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEec
Q psy2533 167 TGPIVTLEIAKQ 178 (684)
Q Consensus 167 sg~~V~LvV~R~ 178 (684)
+|+.|+|+|..-
T Consensus 128 AGdeVtlTV~~l 139 (505)
T KOG3549|consen 128 AGDEVTLTVKHL 139 (505)
T ss_pred cCCEEEEEeHhh
Confidence 999999999643
No 11
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.15 E-value=3.5e-10 Score=125.01 Aligned_cols=161 Identities=25% Similarity=0.299 Sum_probs=103.9
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecCccccccccccCCCCCcc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGAIYHGLATLLSQPSPVM 196 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~~~~~~~stl~s~psP~~ 196 (684)
.|++|..|.++|||+++| |++||+|++|||..+.+. .+...++. ..+..|.|+|.|.........++...+ ..
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~--~~ 331 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASP--EE 331 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCC--Cc
Confidence 589999999999999999 999999999999999864 44555554 357889999999875433222221111 00
Q ss_pred ccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcE
Q psy2533 197 TRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERF 276 (684)
Q Consensus 197 ~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIF 276 (684)
. . . ....-+|+.+. ++.........+ .....|++
T Consensus 332 ~----------~--~-----------~~~~~lGi~~~------------~l~~~~~~~~~l-----------~~~~~Gv~ 365 (428)
T TIGR02037 332 Q----------A--S-----------SSNPFLGLTVA------------NLSPEIRKELRL-----------KGDVKGVV 365 (428)
T ss_pred c----------c--c-----------ccccccceEEe------------cCCHHHHHHcCC-----------CcCcCceE
Confidence 0 0 0 00011222221 110000000000 01125899
Q ss_pred EEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcc
Q psy2533 277 YQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI 333 (684)
Q Consensus 277 V~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~ 333 (684)
|..|. ++|++.| |++||+|++|||+.+.+ ..+...+|+. .+..+.|.|.|.+..
T Consensus 366 V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~~ 423 (428)
T TIGR02037 366 VTKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGAT 423 (428)
T ss_pred EEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 99997 5666665 99999999999999975 4567777775 467899999998754
No 12
>KOG1892|consensus
Probab=99.11 E-value=9.7e-11 Score=135.12 Aligned_cols=101 Identities=51% Similarity=0.774 Sum_probs=88.9
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCC
Q psy2533 217 SSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGD 294 (684)
Q Consensus 217 ~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GD 294 (684)
..+.|+|. +|+|++|..+.|-| ....||||++|. |+|+.+|||..||
T Consensus 935 ~~vtL~Kn-nGmGLSIVAAkGaG------------------------------q~klGIYvKsVV~GgaAd~DGRL~aGD 983 (1629)
T KOG1892|consen 935 ITVTLKKN-NGMGLSIVAAKGAG------------------------------QRKLGIYVKSVVEGGAADHDGRLEAGD 983 (1629)
T ss_pred EEEEEecc-CCceEEEEeeccCC------------------------------ccccceEEEEeccCCccccccccccCc
Confidence 34566666 89999987554321 246799999997 8999999999999
Q ss_pred EEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccccccccccCCCCCcc
Q psy2533 295 QLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVM 348 (684)
Q Consensus 295 qIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~~~~~~~~~psP~~ 348 (684)
+||.|||.+|.|++.+.|+.++..+|..|+|.|.+.+++|+.+++++.+|+|.+
T Consensus 984 QLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKqgAiyhGLatlL~qpsP~~ 1037 (1629)
T KOG1892|consen 984 QLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQGAIYHGLATLLGQPSPTT 1037 (1629)
T ss_pred eeeeecCcccccccHHHHHHHHhccCCeEEEehhhhhhHHHHHHHHhcCCCcch
Confidence 999999999999999999999999999999999999999999999999888877
No 13
>PRK10942 serine endoprotease; Provisional
Probab=99.01 E-value=4.1e-09 Score=118.47 Aligned_cols=153 Identities=18% Similarity=0.256 Sum_probs=101.3
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCccccccccccCCCCCcc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIYHGLATLLSQPSPVM 196 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~~~~~stl~s~psP~~ 196 (684)
.|++|..|.+++||+++| |++||+|++|||..+.+. .+....+.. .+..+.|.|.|.........++... +..
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~--~~~ 385 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQS--SQN 385 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcC--ccc
Confidence 489999999999999999 999999999999999875 555555543 4778999999987432221111000 000
Q ss_pred ccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcE
Q psy2533 197 TRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERF 276 (684)
Q Consensus 197 ~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIF 276 (684)
. .......+|+.. ..+.. .....|++
T Consensus 386 ~-----------------------~~~~~~~lGl~g------------~~l~~-------------------~~~~~gvv 411 (473)
T PRK10942 386 Q-----------------------VDSSNIFNGIEG------------AELSN-------------------KGGDKGVV 411 (473)
T ss_pred c-----------------------ccccccccccee------------eeccc-------------------ccCCCCeE
Confidence 0 000000011110 00000 00113788
Q ss_pred EEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533 277 YQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333 (684)
Q Consensus 277 V~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~ 333 (684)
|..|. ++|++.| |++||+|++|||+.+.++ ++...++...+..+.|.|.|.+..
T Consensus 412 V~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R~g~~ 467 (473)
T PRK10942 412 VDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQRGDSS 467 (473)
T ss_pred EEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECCEE
Confidence 88886 5666655 999999999999999874 577788887778899999998754
No 14
>PRK10139 serine endoprotease; Provisional
Probab=99.00 E-value=5.3e-09 Score=117.06 Aligned_cols=156 Identities=19% Similarity=0.242 Sum_probs=101.7
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCccccccccccCCCCCcc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIYHGLATLLSQPSPVM 196 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~~~~~stl~s~psP~~ 196 (684)
.|++|..|.+++||+++| |++||+|++|||..+.+ ..+....|.. .+..+.|+|.|.........++.. .+..
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~--~~~~ 364 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDT--STSS 364 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECC--CCCc
Confidence 489999999999999999 99999999999999986 4666666654 577899999997743222111100 0000
Q ss_pred ccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcE
Q psy2533 197 TRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERF 276 (684)
Q Consensus 197 ~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIF 276 (684)
. .. .........|+.+. + .. + .....|++
T Consensus 365 ~----------~~----------~~~~~~~~~g~~l~------------~---~~-----~-----------~~~~~Gv~ 393 (455)
T PRK10139 365 S----------AS----------AEMITPALQGATLS------------D---GQ-----L-----------KDGTKGIK 393 (455)
T ss_pred c----------cc----------cccccccccccEec------------c---cc-----c-----------ccCCCceE
Confidence 0 00 00000000011110 0 00 0 01124788
Q ss_pred EEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533 277 YQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333 (684)
Q Consensus 277 V~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~ 333 (684)
|..|. ++|++.| |++||+|++|||+.+.++ ++...+|+..+..+.|.|.|.+..
T Consensus 394 V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~v~l~v~R~g~~ 449 (455)
T PRK10139 394 IDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRGNES 449 (455)
T ss_pred EEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECCEE
Confidence 88887 5666655 999999999999999764 567777777667899999998754
No 15
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.97 E-value=5.1e-09 Score=88.40 Aligned_cols=80 Identities=33% Similarity=0.520 Sum_probs=69.1
Q ss_pred eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533 92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171 (684)
Q Consensus 92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V 171 (684)
+.+.+.+....+|||.+.++... ..+++|..|.+++||+..| |++||+|++|||.++.++++.++..+|+.....+
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v 77 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEV 77 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeE
Confidence 45677777789999999876432 2479999999999999988 9999999999999999999999999999887777
Q ss_pred EEEE
Q psy2533 172 TLEI 175 (684)
Q Consensus 172 ~LvV 175 (684)
.|.|
T Consensus 78 ~l~v 81 (82)
T cd00992 78 TLTV 81 (82)
T ss_pred EEEE
Confidence 7766
No 16
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.94 E-value=7.5e-09 Score=115.51 Aligned_cols=151 Identities=23% Similarity=0.235 Sum_probs=94.8
Q ss_pred EEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCccccccccccCCCCCccccCC
Q psy2533 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQ 200 (684)
Q Consensus 121 IfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~ 200 (684)
-+|..|.++|||+++| |++||+|++|||.++.+...-...-..+..++.+.++|.|.+.......++...+.+..
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~---- 202 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFE---- 202 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccC----
Confidence 4789999999999999 99999999999999988644333323334467899999998754332222211110000
Q ss_pred CccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEec
Q psy2533 201 VKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNL 280 (684)
Q Consensus 201 ~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI 280 (684)
... .....++|+. +. ....+..|..|
T Consensus 203 --------~~~----------~~~~~~lGl~--------------~~----------------------~~~~~~vV~~V 228 (449)
T PRK10779 203 --------PDK----------QDPVSSLGIR--------------PR----------------------GPQIEPVLAEV 228 (449)
T ss_pred --------ccc----------cchhhccccc--------------cc----------------------CCCcCcEEEee
Confidence 000 0000111110 00 00112456666
Q ss_pred c--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCcc
Q psy2533 281 S--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAI 333 (684)
Q Consensus 281 ~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~~ 333 (684)
. ++|++.| |++||+|++|||+.+.+. ++...+++. .+..+.|.|.|.+..
T Consensus 229 ~~~SpA~~AG-L~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~ 281 (449)
T PRK10779 229 QPNSAASKAG-LQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQGSP 281 (449)
T ss_pred CCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEECCEE
Confidence 5 5666654 999999999999999754 456666655 456899999998754
No 17
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.93 E-value=1.1e-08 Score=86.25 Aligned_cols=82 Identities=29% Similarity=0.438 Sum_probs=70.3
Q ss_pred eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533 92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171 (684)
Q Consensus 92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V 171 (684)
..+.+.+.. ..|||.+..+.... .+++|..|.+++||++.| |++||+|++|||..+.++++.+.+.+++..+..+
T Consensus 3 ~~~~~~~~~-~~~G~~~~~~~~~~---~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~ 77 (85)
T smart00228 3 RLVELEKGG-GGLGFSLVGGKDEG---GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKV 77 (85)
T ss_pred EEEEEEECC-CcccEEEECCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence 456666666 89999998653221 479999999999999999 9999999999999999999999999999887789
Q ss_pred EEEEEec
Q psy2533 172 TLEIAKQ 178 (684)
Q Consensus 172 ~LvV~R~ 178 (684)
.|.+.|.
T Consensus 78 ~l~i~r~ 84 (85)
T smart00228 78 TLTVLRG 84 (85)
T ss_pred EEEEEeC
Confidence 9998775
No 18
>KOG3553|consensus
Probab=98.91 E-value=3.6e-10 Score=101.62 Aligned_cols=92 Identities=18% Similarity=0.330 Sum_probs=75.6
Q ss_pred CCCCCceEEEEEecC---CC-----cccEEEEeccCCC-------CCcccEEEEEecCCChhcccCccccCCeeeecCCe
Q psy2533 86 RLDSSMKSHSVRDML---RQ-----EAKLSEMSEEGAG-------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQ 150 (684)
Q Consensus 86 ~~~s~~~~V~v~k~~---~~-----GLGfsI~GG~~~~-------~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~ 150 (684)
..+|-...|++.|.. .. -+||.|-||.+.+ ..+.||||++|.+||||+.+| |+.+|.||+|||.
T Consensus 11 aveclsi~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~ 89 (124)
T KOG3553|consen 11 AVECLSIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGW 89 (124)
T ss_pred ceEEEEEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCc
Confidence 445666677776654 12 3899999997755 246799999999999999999 9999999999999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEEEEecC
Q psy2533 151 SLVGITQEKAAEYLVRTGPIVTLEIAKQG 179 (684)
Q Consensus 151 sl~g~sh~eAV~lLk~sg~~V~LvV~R~~ 179 (684)
++.-++|.+|+..|++. ..++|.|.|..
T Consensus 90 DfTMvTHd~Avk~i~k~-~vl~mLVaR~~ 117 (124)
T KOG3553|consen 90 DFTMVTHDQAVKRITKE-EVLRMLVARQS 117 (124)
T ss_pred eeEEEEhHHHHHHhhHh-HHHHHHHHhhc
Confidence 99999999999999884 55677777654
No 19
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.82 E-value=1.9e-08 Score=82.89 Aligned_cols=68 Identities=34% Similarity=0.418 Sum_probs=60.2
Q ss_pred CcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC-CEEEEEE
Q psy2533 102 QEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-PIVTLEI 175 (684)
Q Consensus 102 ~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg-~~V~LvV 175 (684)
.+|||.+.++.+ .+++|..|.+++||+..| |++||+|++|||.++.++++.++..+|+... ..|.|.|
T Consensus 1 ~~~G~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 1 GGLGFSIRGGTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCccEEEecCCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 368999986543 379999999999999988 9999999999999999999999999999874 7788876
No 20
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.77 E-value=1.4e-08 Score=86.62 Aligned_cols=55 Identities=25% Similarity=0.494 Sum_probs=51.4
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~ 328 (684)
.++||.+|. |+|++.| |++||+|++|||+++.++++.+++.+|+.++..|+|+|.
T Consensus 25 ~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 25 KGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp EEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred CCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 578999997 7889988 999999999999999999999999999999999999884
No 21
>KOG3571|consensus
Probab=98.71 E-value=3.6e-08 Score=108.95 Aligned_cols=89 Identities=24% Similarity=0.368 Sum_probs=73.5
Q ss_pred ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC---
Q psy2533 91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--- 167 (684)
Q Consensus 91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--- 167 (684)
..+|.|--+.-.-|||+|+|- .+..++.||||..|.+||+.+.+|||.+||.||+||.+++++|+..+||..|+.+
T Consensus 250 IITV~LnMe~vnfLGiSivgq-sn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~ 328 (626)
T KOG3571|consen 250 IITVTLNMETVNFLGISIVGQ-SNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR 328 (626)
T ss_pred EEEEEecccccccceeEeecc-cCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence 344444444456699999973 3344677999999999999999999999999999999999999999999999965
Q ss_pred CCEEEEEEEecCc
Q psy2533 168 GPIVTLEIAKQGA 180 (684)
Q Consensus 168 g~~V~LvV~R~~~ 180 (684)
...++|+|...-.
T Consensus 329 ~gPi~ltvAk~~D 341 (626)
T KOG3571|consen 329 PGPIKLTVAKCWD 341 (626)
T ss_pred CCCeEEEEeeccC
Confidence 5569999987643
No 22
>KOG3550|consensus
Probab=98.67 E-value=4.6e-08 Score=94.04 Aligned_cols=61 Identities=30% Similarity=0.379 Sum_probs=55.3
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~ 333 (684)
..|||..|+ |.|++.|+|+.||+||+|||+++++--|+.|+.+||.+-+.|.|+|......
T Consensus 115 spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvvrytpkv 177 (207)
T KOG3550|consen 115 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRYTPKV 177 (207)
T ss_pred CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEecChHH
Confidence 458898887 7999999999999999999999999999999999999999999999765433
No 23
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.64 E-value=2.4e-07 Score=102.87 Aligned_cols=133 Identities=17% Similarity=0.275 Sum_probs=91.7
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCccccccccccCCCCCcccc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~~~~~stl~s~psP~~~s 198 (684)
.+.+|..|.++|||+++| |++||+|++|||..+.+. .+....+....+.+.+.|.|........
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~g~~~~l~------------- 191 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAERENWTFE------------- 191 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEecCceEec-------------
Confidence 467899999999999999 999999999999998765 5555555444477888888864321000
Q ss_pred CCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEE
Q psy2533 199 GQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQ 278 (684)
Q Consensus 199 ~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~ 278 (684)
. . +++ ... ....+..|.
T Consensus 192 -----------v---------~-------l~~--~~~----------------------------------~~~~g~vV~ 208 (420)
T TIGR00054 192 -----------V---------M-------KEL--IPR----------------------------------GPKIEPVLS 208 (420)
T ss_pred -----------c---------c-------ccc--eec----------------------------------CCCcCcEEE
Confidence 0 0 000 000 000134555
Q ss_pred ecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCcc
Q psy2533 279 NLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAI 333 (684)
Q Consensus 279 sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~~ 333 (684)
++. ++|++. +|++||+|++|||+.+.+ .++....++. .+..+.|.|.|.+..
T Consensus 209 ~V~~~SpA~~a-GL~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 209 DVTPNSPAEKA-GLKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNGET 263 (420)
T ss_pred EECCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECCEE
Confidence 665 456655 499999999999999975 4577777766 456799999988754
No 24
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.57 E-value=1.4e-07 Score=80.99 Aligned_cols=73 Identities=26% Similarity=0.434 Sum_probs=57.7
Q ss_pred cccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecCc
Q psy2533 103 EAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGA 180 (684)
Q Consensus 103 GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~~ 180 (684)
+||+.+..-.. ..+++|..|.++|||+++| |++||+|++|||..+.+ ..+....|. ..+..|.|.|.|...
T Consensus 2 ~lGv~~~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l~v~R~g~ 74 (82)
T PF13180_consen 2 GLGVTVQNLSD----TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTLTVLRDGE 74 (82)
T ss_dssp E-SEEEEECSC----SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred EECeEEEEccC----CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 57888875332 2479999999999999999 99999999999999955 466666664 458899999999876
Q ss_pred cc
Q psy2533 181 IY 182 (684)
Q Consensus 181 ~~ 182 (684)
..
T Consensus 75 ~~ 76 (82)
T PF13180_consen 75 EL 76 (82)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 25
>KOG3551|consensus
Probab=98.52 E-value=4.5e-07 Score=97.89 Aligned_cols=58 Identities=29% Similarity=0.389 Sum_probs=51.5
Q ss_pred CCCcEEEecc-h-hhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533 272 DPERFYQNLS-V-YRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329 (684)
Q Consensus 272 d~GIFV~sI~-G-aAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R 329 (684)
...|.|.+|+ | +|++.+.|..||.||+|||.++.+.||+|||++||.+|..|-|.|.-
T Consensus 109 kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levKy 168 (506)
T KOG3551|consen 109 KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVKY 168 (506)
T ss_pred CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeeeee
Confidence 4456666776 4 78999999999999999999999999999999999999999998874
No 26
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.44 E-value=8.6e-07 Score=75.72 Aligned_cols=70 Identities=27% Similarity=0.452 Sum_probs=60.4
Q ss_pred CcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCEEEEEEEec
Q psy2533 102 QEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQ 178 (684)
Q Consensus 102 ~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~V~LvV~R~ 178 (684)
.+||+.+.-. ..+++|..|.+++||++.| |++||+|++|||..+.+.++.++..+++. .+..+.|.|.|.
T Consensus 2 ~~lG~~~~~~------~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYD------DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEc------CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 4788888642 2379999999999999998 99999999999999999988999888875 467899999886
No 27
>KOG3651|consensus
Probab=98.40 E-value=8.8e-07 Score=93.22 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=74.9
Q ss_pred ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533 91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170 (684)
Q Consensus 91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~ 170 (684)
...|.+.|...+-+||+|-||...+ +.+||-.|..+.||+++|+|+.||.|++|||+++.|.+..++.++|.-+-+.
T Consensus 5 ~~~v~ltKD~~nliGISIGGGapyC---PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~e 81 (429)
T KOG3651|consen 5 SETVELTKDEKNLIGISIGGGAPYC---PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNE 81 (429)
T ss_pred cCcEEEeeccccceeEEecCCCCcC---CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccc
Confidence 3468888888889999998876554 5799999999999999999999999999999999999999999999998888
Q ss_pred EEEEEEe
Q psy2533 171 VTLEIAK 177 (684)
Q Consensus 171 V~LvV~R 177 (684)
|.+.+-.
T Consensus 82 V~IhyNK 88 (429)
T KOG3651|consen 82 VKIHYNK 88 (429)
T ss_pred eEEEehh
Confidence 8877643
No 28
>KOG3552|consensus
Probab=98.39 E-value=2.9e-07 Score=107.19 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=67.4
Q ss_pred CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533 89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168 (684)
Q Consensus 89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg 168 (684)
+..+.|.+.+...-|||| +.| .||+|..|.+|||+ .|+|++||+||+|||.++..++.+.++.+++.|.
T Consensus 54 ~~pr~vq~~r~~~lGFgf--vag-------rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace 122 (1298)
T KOG3552|consen 54 WEPRQVQLQRNASLGFGF--VAG-------RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACE 122 (1298)
T ss_pred Ccchhhhhhcccccccee--ecC-------CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHh
Confidence 346667776655555555 444 37999999999999 6999999999999999999999999999999999
Q ss_pred CEEEEEEEec
Q psy2533 169 PIVTLEIAKQ 178 (684)
Q Consensus 169 ~~V~LvV~R~ 178 (684)
..|.|+|++.
T Consensus 123 ~sv~ltV~qP 132 (1298)
T KOG3552|consen 123 SSVNLTVCQP 132 (1298)
T ss_pred hhcceEEecc
Confidence 9999999984
No 29
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.11 E-value=1.2e-05 Score=67.58 Aligned_cols=57 Identities=28% Similarity=0.443 Sum_probs=51.3
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~ 330 (684)
.|+||..|. ++|++.| |++||+|++|||+.+.++++.+...+++..+..+.|.+.|+
T Consensus 26 ~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~ 84 (85)
T smart00228 26 GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG 84 (85)
T ss_pred CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence 578999998 6788877 99999999999999999999999999988888999999875
No 30
>KOG3549|consensus
Probab=98.07 E-value=7.2e-06 Score=87.85 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=51.2
Q ss_pred CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533 274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330 (684)
Q Consensus 274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~ 330 (684)
.+.|..|. -+|+..|.|-+||.||.|||+.++..+|+|++.+|+++|+.|+|+|..-
T Consensus 81 PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~~l 139 (505)
T KOG3549|consen 81 PVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVKHL 139 (505)
T ss_pred cEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeHhh
Confidence 35566666 6889999999999999999999999999999999999999999999653
No 31
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.05 E-value=1.8e-05 Score=66.88 Aligned_cols=68 Identities=24% Similarity=0.251 Sum_probs=51.6
Q ss_pred ccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533 104 AKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 181 (684)
Q Consensus 104 LGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~ 181 (684)
||+.+... ..+++|..|.+++||+..| |++||+|++|||..+.+ ..++...+ ..+..+.|++.|....
T Consensus 3 ~G~~~~~~------~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~~ 70 (80)
T cd00990 3 LGLTLDKE------EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDRL 70 (80)
T ss_pred ccEEEEcc------CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCEE
Confidence 67777421 2369999999999999999 99999999999999876 33333332 2467899999887643
No 32
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.03 E-value=1.8e-05 Score=67.76 Aligned_cols=60 Identities=25% Similarity=0.424 Sum_probs=51.5
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCEEEEEEEecCcc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAI 181 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~V~LvV~R~~~~ 181 (684)
.|++|..|.+++||+..| |++||.|++|||..+.+ ..+...+|... +..+.|.+.|....
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~l~v~r~g~~ 71 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVITVTVLPSTTK 71 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEEEEEEECCEE
Confidence 479999999999999999 99999999999999984 56777788753 67899999987643
No 33
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.01 E-value=2.2e-05 Score=64.60 Aligned_cols=54 Identities=30% Similarity=0.356 Sum_probs=46.6
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC-CeEEEEE
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-PIVTLEI 327 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg-~~VtL~V 327 (684)
.+++|..+. ++|+. ++|++||+|++|||.++.+++++++..+|+... ..|+|.|
T Consensus 13 ~~~~V~~v~~~s~a~~-~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 13 GGVVVLSVEPGSPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCEEEEEeCCCCHHHH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 478888887 56665 569999999999999999999999999999865 6788876
No 34
>KOG3606|consensus
Probab=98.00 E-value=9.2e-06 Score=84.69 Aligned_cols=85 Identities=19% Similarity=0.346 Sum_probs=68.4
Q ss_pred ceEEEEEecC-CCcccEEEEeccCCC------CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHH
Q psy2533 91 MKSHSVRDML-RQEAKLSEMSEEGAG------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEY 163 (684)
Q Consensus 91 ~~~V~v~k~~-~~GLGfsI~GG~~~~------~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~l 163 (684)
-+.|.+.|-+ ...|||-|.-|.... ...+||||+++.|||.|...|.|.+.|.||+|||+.|.+.+.+++..+
T Consensus 159 HRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDM 238 (358)
T KOG3606|consen 159 HRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDM 238 (358)
T ss_pred hhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHH
Confidence 3455565544 568999999874422 135699999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEEE
Q psy2533 164 LVRTGPIVTLEI 175 (684)
Q Consensus 164 Lk~sg~~V~LvV 175 (684)
+-....-+-++|
T Consensus 239 MvANshNLIiTV 250 (358)
T KOG3606|consen 239 MVANSHNLIITV 250 (358)
T ss_pred HhhcccceEEEe
Confidence 876655555555
No 35
>KOG3571|consensus
Probab=97.95 E-value=1.4e-05 Score=88.89 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=54.9
Q ss_pred CCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC---CCeEEEEEEe
Q psy2533 269 APADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT---GPIVTLEIAK 329 (684)
Q Consensus 269 ~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s---g~~VtL~V~R 329 (684)
...|.||||-+|. |+.|.+|||.+||+||.||.+++++|+..+||..|++. ...++|+|+.
T Consensus 273 ~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk 338 (626)
T KOG3571|consen 273 ARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAK 338 (626)
T ss_pred cCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEee
Confidence 3468899999998 89999999999999999999999999999999999985 4458888875
No 36
>KOG0609|consensus
Probab=97.95 E-value=2.2e-05 Score=88.34 Aligned_cols=85 Identities=22% Similarity=0.353 Sum_probs=76.2
Q ss_pred CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533 89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168 (684)
Q Consensus 89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg 168 (684)
.-++.|.+.+..+..||.+|.--.+ ..+||.+|..||.|++.|.|++||.|++|||+++.+....++..+|+.+.
T Consensus 121 ~~vriv~i~k~~~eplG~Tik~~e~-----~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~ 195 (542)
T KOG0609|consen 121 EAVRIVRIVKNTGEPLGATIRVEED-----TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR 195 (542)
T ss_pred ceeEEEEEeecCCCccceEEEeccC-----CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC
Confidence 4578888999999999999984322 25999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEec
Q psy2533 169 PIVTLEIAKQ 178 (684)
Q Consensus 169 ~~V~LvV~R~ 178 (684)
+.++++|.-.
T Consensus 196 G~itfkiiP~ 205 (542)
T KOG0609|consen 196 GSITFKIIPS 205 (542)
T ss_pred CcEEEEEccc
Confidence 9999999654
No 37
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.93 E-value=3.3e-05 Score=85.17 Aligned_cols=80 Identities=25% Similarity=0.372 Sum_probs=63.4
Q ss_pred CCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCEEEEEEEec
Q psy2533 100 LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQ 178 (684)
Q Consensus 100 ~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~V~LvV~R~ 178 (684)
...|+|+.+.-..+......+++|..|.++|||+++| |++||+|++|||.++.+.+..++..+|+. .+..|.|+|.|.
T Consensus 83 ~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~ 161 (389)
T PLN00049 83 AVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG 161 (389)
T ss_pred CceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence 3457888876422211111368999999999999999 99999999999999999988888888875 467899999987
Q ss_pred Cc
Q psy2533 179 GA 180 (684)
Q Consensus 179 ~~ 180 (684)
..
T Consensus 162 g~ 163 (389)
T PLN00049 162 PE 163 (389)
T ss_pred CE
Confidence 54
No 38
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=97.90 E-value=4.5e-05 Score=64.31 Aligned_cols=54 Identities=35% Similarity=0.544 Sum_probs=46.9
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEE
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V 327 (684)
.|++|..|. ++|++ ++|++||+|++|||..+.++++.++..+|+.....++|.|
T Consensus 26 ~~~~V~~v~~~s~a~~-~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 26 GGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred CCeEEEEECCCChHHh-CCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 468888887 56666 6799999999999999999999999999998777777776
No 39
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.89 E-value=6.2e-05 Score=63.24 Aligned_cols=59 Identities=31% Similarity=0.526 Sum_probs=50.2
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CCEEEEEEEecCc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGA 180 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V~LvV~R~~~ 180 (684)
.+++|..|.++++|++.| |++||.|++|||.++.+ ..++..+|... +..+.+.+.|...
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECCE
Confidence 368999999999999999 99999999999999985 56777777665 6678999988653
No 40
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.87 E-value=6.1e-05 Score=64.09 Aligned_cols=58 Identities=33% Similarity=0.626 Sum_probs=48.9
Q ss_pred cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCcc
Q psy2533 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI 181 (684)
Q Consensus 120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~ 181 (684)
|++|..|.+++||+. | |++||.|++|||..+.+ ..+...+|.. .+..+.|.+.|....
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~~ 68 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEKE 68 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 689999999999986 8 99999999999999975 5667777764 467899999887654
No 41
>KOG3542|consensus
Probab=97.86 E-value=2.2e-05 Score=89.65 Aligned_cols=85 Identities=26% Similarity=0.416 Sum_probs=73.6
Q ss_pred CceEEEEEe-cCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533 90 SMKSHSVRD-MLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168 (684)
Q Consensus 90 ~~~~V~v~k-~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg 168 (684)
..+.|++.| .....|-|.+.||...+ -||||..|.||+-|++.| |+.||+||+|||.+.++++...|+.+|+..
T Consensus 535 K~RqviLtk~sre~pl~f~L~GGsEkG---fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn- 609 (1283)
T KOG3542|consen 535 KPRQVILTKASREDPLMFRLVGGSEKG---FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN- 609 (1283)
T ss_pred cceeEEEecccccCCceeEeccCcccc---ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-
Confidence 467788887 45668999999997766 489999999999999999 999999999999999999999999999876
Q ss_pred CEEEEEEEecC
Q psy2533 169 PIVTLEIAKQG 179 (684)
Q Consensus 169 ~~V~LvV~R~~ 179 (684)
..++|+|....
T Consensus 610 thLtltvKtNv 620 (1283)
T KOG3542|consen 610 THLTLTVKTNV 620 (1283)
T ss_pred ceEEEEEecce
Confidence 45777776543
No 42
>KOG4371|consensus
Probab=97.86 E-value=6.1e-05 Score=89.45 Aligned_cols=171 Identities=21% Similarity=0.258 Sum_probs=118.5
Q ss_pred CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533 101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180 (684)
Q Consensus 101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~ 180 (684)
.+.||..|+.-. ..+.|+.....+.-.+-. |++||.|+.|||+-+.+.-|.+|+.+++..++.|.|-|+|.++
T Consensus 1157 ~~~l~~~~a~~~------~~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 1229 (1332)
T KOG4371|consen 1157 EGSLGVQIASLS------GRVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPP 1229 (1332)
T ss_pred CCCCCceeccCc------cceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCc
Confidence 367999987432 246777777776655555 9999999999999999999999999999999999999999887
Q ss_pred cccccccccCCCCCccccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCC
Q psy2533 181 IYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQA 260 (684)
Q Consensus 181 ~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~ 260 (684)
.+....-.... + .. .+. .....+.+-..|+|+++.
T Consensus 1230 ~~~d~~~~s~~-----~-------~~-~~l-----~~~~~~~~p~~~~~~~~~--------------------------- 1264 (1332)
T KOG4371|consen 1230 AYSDQHHASST-----S-------AS-APL-----ISVMLLKKPMATLGLSLA--------------------------- 1264 (1332)
T ss_pred ccccchhhhhh-----c-------cc-chh-----hhheeeeccccccccccc---------------------------
Confidence 64332110000 0 00 000 001122233334444432
Q ss_pred CCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533 261 SPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330 (684)
Q Consensus 261 sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~ 330 (684)
......|+|+..|. .+|.-.|.||+||+++..+|+++.+.+.....+-++---+.|.+.|.|.
T Consensus 1265 -------~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1265 -------KRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTRE 1329 (1332)
T ss_pred -------ccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehhh
Confidence 11234578887776 5677889999999999999999999998887777776666777777654
No 43
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.82 E-value=5.5e-05 Score=81.52 Aligned_cols=73 Identities=26% Similarity=0.468 Sum_probs=61.1
Q ss_pred CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCEEEEEEEecC
Q psy2533 101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQG 179 (684)
Q Consensus 101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~V~LvV~R~~ 179 (684)
-.+||+.+.-. ..+++|..|.++|||+++| |++||+|++|||.++.+.+..++..+|+. .+..+.|+|.|..
T Consensus 50 ~~~lG~~~~~~------~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 50 LEGIGIQVGMD------DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred eEEEEEEEEEE------CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 35788888632 1269999999999999999 99999999999999999887788888765 5778999999875
Q ss_pred c
Q psy2533 180 A 180 (684)
Q Consensus 180 ~ 180 (684)
.
T Consensus 123 ~ 123 (334)
T TIGR00225 123 K 123 (334)
T ss_pred C
Confidence 4
No 44
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.80 E-value=4.8e-05 Score=84.55 Aligned_cols=74 Identities=27% Similarity=0.438 Sum_probs=65.3
Q ss_pred CCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CCEEEEEEEec
Q psy2533 100 LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQ 178 (684)
Q Consensus 100 ~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V~LvV~R~ 178 (684)
.-.|+|+.|.-... .++.|.++.+|+||+++| |++||.|+.|||.++.+++..+|+..|+.. |..|+|+|.|.
T Consensus 98 ~~~GiG~~i~~~~~-----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 98 EFGGIGIELQMEDI-----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred cccceeEEEEEecC-----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 56789999875332 368999999999999999 999999999999999999999999999865 77899999997
Q ss_pred C
Q psy2533 179 G 179 (684)
Q Consensus 179 ~ 179 (684)
.
T Consensus 172 ~ 172 (406)
T COG0793 172 G 172 (406)
T ss_pred C
Confidence 3
No 45
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.78 E-value=5.7e-05 Score=64.76 Aligned_cols=59 Identities=31% Similarity=0.514 Sum_probs=49.5
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCEEEEEEEecCc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGA 180 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~V~LvV~R~~~ 180 (684)
.+++|..|.+++||++.| |++||.|++|||..+.+. .+...++... +..+.|.+.|...
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 379999999999999999 999999999999999765 4556666554 7789999988763
No 46
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=97.71 E-value=5.5e-05 Score=65.01 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=46.3
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY 334 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~ 334 (684)
.|++|.++. ++|++.| |++||+|++|||..+.+. .+...+|.. .+..|+|.|.|.+...
T Consensus 14 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~~ 76 (82)
T PF13180_consen 14 GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLTVLRDGEEL 76 (82)
T ss_dssp SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEEEEETTEEE
T ss_pred CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence 488999987 7888877 999999999999999554 555666643 5778999999987543
No 47
>KOG3553|consensus
Probab=97.65 E-value=9.3e-06 Score=73.63 Aligned_cols=58 Identities=21% Similarity=0.400 Sum_probs=49.9
Q ss_pred CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533 271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330 (684)
Q Consensus 271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~ 330 (684)
.+.||||..+. +||+..| ||.+|.||.|||.++.=+||++|+..|+. ...+.++|.|.
T Consensus 57 tD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVaR~ 116 (124)
T KOG3553|consen 57 TDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVARQ 116 (124)
T ss_pred CCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHHhh
Confidence 57899999997 6777776 99999999999999999999999999987 34567777665
No 48
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.64 E-value=0.00021 Score=60.96 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=48.2
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeC
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQ 330 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~ 330 (684)
.+++|..|. ++|++. +|++||+|++|||..+.+.++.++..+++. .+..+.|.+.|.
T Consensus 13 ~~~~V~~v~~~s~a~~~-gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 13 GGLVITSVLPGSPAAKA-GIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred CeEEEEEecCCCCHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 467888886 577776 599999999999999999988999888875 467899999887
No 49
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.63 E-value=0.00011 Score=86.33 Aligned_cols=72 Identities=22% Similarity=0.307 Sum_probs=58.9
Q ss_pred CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCC-----eecCCCCHHHHHHHHHcC-CCEEEEE
Q psy2533 101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDG-----QSLVGITQEKAAEYLVRT-GPIVTLE 174 (684)
Q Consensus 101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG-----~sl~g~sh~eAV~lLk~s-g~~V~Lv 174 (684)
-.|+|+.+.-.. ..++|..|.|||||++++.|++||+|++||| .++.+++..+++.+|+.. |..|+|+
T Consensus 243 ~~GIGa~l~~~~------~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~Lt 316 (667)
T PRK11186 243 LEGIGAVLQMDD------DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLE 316 (667)
T ss_pred eeEEEEEEEEeC------CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEE
Confidence 457788775321 2589999999999999844999999999994 467789999999999854 7789999
Q ss_pred EEec
Q psy2533 175 IAKQ 178 (684)
Q Consensus 175 V~R~ 178 (684)
|.|.
T Consensus 317 V~r~ 320 (667)
T PRK11186 317 ILPA 320 (667)
T ss_pred EEeC
Confidence 9884
No 50
>KOG3651|consensus
Probab=97.54 E-value=0.00015 Score=76.79 Aligned_cols=60 Identities=23% Similarity=0.367 Sum_probs=55.4
Q ss_pred CCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533 270 PADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329 (684)
Q Consensus 270 ~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R 329 (684)
+..|=+||..|+ .||+++|+|+.||.|++|||+++.|.+-.+++.+|..+-+.|++....
T Consensus 27 pyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~IhyNK 88 (429)
T KOG3651|consen 27 PYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHYNK 88 (429)
T ss_pred CcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEehh
Confidence 456778999998 799999999999999999999999999999999999999999998765
No 51
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.45 E-value=0.00061 Score=58.40 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=46.1
Q ss_pred CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCc
Q psy2533 271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGA 332 (684)
Q Consensus 271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~ 332 (684)
...|++|..+. ++|++. +|++||+|++|||..+.++ .+...+|... +..+.|.+.|.+.
T Consensus 8 ~~~Gv~V~~V~~~spa~~a-GL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g~ 70 (79)
T cd00991 8 AVAGVVIVGVIVGSPAENA-VLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPSTT 70 (79)
T ss_pred cCCcEEEEEECCCChHHhc-CCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECCE
Confidence 44688998887 566554 5999999999999999854 5677777653 6789999998764
No 52
>KOG4407|consensus
Probab=97.36 E-value=0.00032 Score=84.85 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=101.6
Q ss_pred CCceEEEEEecCCCcccEEEEeccCCC----------------------CCcccEEEEEecCCChhcccCccccCCeeee
Q psy2533 89 SSMKSHSVRDMLRQEAKLSEMSEEGAG----------------------QDRLGIYIKSVVKGGAADANGRLQAGDQLLK 146 (684)
Q Consensus 89 s~~~~V~v~k~~~~GLGfsI~GG~~~~----------------------~~~~gIfIs~V~pGGpA~r~GrLqvGDrILa 146 (684)
.+.+.+.++|+++.||||++..=.-.+ .....+|+..+..++|+..+| +.-||.|.-
T Consensus 44 ~~~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~ 122 (1973)
T KOG4407|consen 44 IQPKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAG 122 (1973)
T ss_pred CCCceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceee
Confidence 456677788899999999986421111 112368999999999999999 999999999
Q ss_pred cCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccccccccCCC
Q psy2533 147 VDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNN 226 (684)
Q Consensus 147 VNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~ 226 (684)
|||..+.+.+ .....+++.....+
T Consensus 123 itG~e~~~~T-S~~~~~vk~~eT~~------------------------------------------------------- 146 (1973)
T KOG4407|consen 123 ITGLEPTSPT-SLPPYQVKAMETIF------------------------------------------------------- 146 (1973)
T ss_pred ecccccCCCc-cccHHHHhhhhhhh-------------------------------------------------------
Confidence 9999888766 44444444443222
Q ss_pred CCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEec
Q psy2533 227 GVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSL 304 (684)
Q Consensus 227 GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl 304 (684)
|++|. |+|.-. .|+.||+++.||....
T Consensus 147 --------------------------------------------------~~eV~~n~~~~~a-~LQ~~~~V~~v~~q~~ 175 (1973)
T KOG4407|consen 147 --------------------------------------------------IKEVQANGPAHYA-NLQTGDRVLMVNNQPI 175 (1973)
T ss_pred --------------------------------------------------hhhhccCChhHHH-hhhccceeEEeecCcc
Confidence 22222 223333 4999999999999999
Q ss_pred CCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533 305 VGITQEKAAEYLVRTGPIVTLEIAKQG 331 (684)
Q Consensus 305 ~g~Th~eAv~lLk~sg~~VtL~V~R~~ 331 (684)
.++...+++.+++.....++|.|....
T Consensus 176 A~i~~s~~~S~~~qt~~~~~~~~~P~~ 202 (1973)
T KOG4407|consen 176 AGIAYSTIVSMIKQTPAVLTLHVVPKE 202 (1973)
T ss_pred cchhhhhhhhhhccCCCCCCceecccc
Confidence 999999999999999999999998754
No 53
>KOG3606|consensus
Probab=97.24 E-value=0.001 Score=69.88 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=52.6
Q ss_pred CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533 272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329 (684)
Q Consensus 272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R 329 (684)
-+||||..+. |.|.-.|.|-+.|.+|+|||+.|.|.|.+++..|+.....-+-++|..
T Consensus 193 vpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTVkP 252 (358)
T KOG3606|consen 193 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITVKP 252 (358)
T ss_pred cCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEecc
Confidence 4799999997 899999999999999999999999999999999998877777777754
No 54
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.20 E-value=0.0009 Score=70.41 Aligned_cols=73 Identities=22% Similarity=0.238 Sum_probs=56.7
Q ss_pred cccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCc
Q psy2533 103 EAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGA 180 (684)
Q Consensus 103 GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~ 180 (684)
.+|++..--.+ ...|+.|..+.++++|++.| |+.||+|++|||.++.+. .++..++.. .++.+.|+|.|++.
T Consensus 178 ~lgi~p~~~~g---~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 178 YIRLSPVMKND---KLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred eEeEEEEEeCC---ceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCE
Confidence 45666543211 12489999999999999999 999999999999999874 556666665 35689999999875
Q ss_pred c
Q psy2533 181 I 181 (684)
Q Consensus 181 ~ 181 (684)
.
T Consensus 252 ~ 252 (259)
T TIGR01713 252 R 252 (259)
T ss_pred E
Confidence 4
No 55
>KOG3605|consensus
Probab=97.16 E-value=0.0003 Score=80.56 Aligned_cols=71 Identities=24% Similarity=0.409 Sum_probs=58.8
Q ss_pred eEEEEEecC-CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533 92 KSHSVRDML-RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170 (684)
Q Consensus 92 ~~V~v~k~~-~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~ 170 (684)
.+|.|+|.. ..-|||+|.-| +|.++..||.|+|-| +++|-||++|||.+|.-..|+..|.+|..+-+.
T Consensus 738 ~~V~I~RPd~kyQLGFSVQNG----------iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGE 806 (829)
T KOG3605|consen 738 TTVLIRRPDLRYQLGFSVQNG----------IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGE 806 (829)
T ss_pred eEEEeecccchhhccceeeCc----------EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhhhh
Confidence 344444322 45799999843 788999999999998 999999999999999999999999999988666
Q ss_pred EEE
Q psy2533 171 VTL 173 (684)
Q Consensus 171 V~L 173 (684)
|.+
T Consensus 807 IhM 809 (829)
T KOG3605|consen 807 IHM 809 (829)
T ss_pred hhh
Confidence 655
No 56
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.15 E-value=0.0017 Score=55.16 Aligned_cols=58 Identities=21% Similarity=0.405 Sum_probs=44.2
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY 334 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~ 334 (684)
.|+.|..+. ++|+. | |++||+|++|||..+.+ .++...+|.. .+..+.|.+.|.+..+
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~~~ 69 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEKEL 69 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence 367888877 56664 5 99999999999999875 4566677764 4678999999876543
No 57
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.13 E-value=0.0013 Score=56.30 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=44.6
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCc
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGA 332 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~ 332 (684)
.|++|..|. ++|++.| |++||+|++|||..+.+.. +...++... +..+.|.+.|.+.
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~--~~~~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVA--DLRRALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECCE
Confidence 478888887 6777655 9999999999999998654 455566554 6789999988764
No 58
>PRK10898 serine endoprotease; Provisional
Probab=97.11 E-value=0.00097 Score=72.85 Aligned_cols=61 Identities=18% Similarity=0.416 Sum_probs=50.0
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecCccc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGAIY 182 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~~~~ 182 (684)
.|++|..|.+++||++.| |++||+|++|||.++.+. .+....|. ..+..+.|.|.|.....
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g~~~ 341 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQL 341 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 589999999999999999 999999999999999764 33444443 45778999999987543
No 59
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.08 E-value=0.0013 Score=55.48 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=41.9
Q ss_pred CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533 272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333 (684)
Q Consensus 272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~ 333 (684)
+.++.|..|. ++|++.| |++||+|++|||..+.+ ..+++..+ ..+..+.|.+.|.+..
T Consensus 11 ~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~~ 70 (80)
T cd00990 11 EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDRL 70 (80)
T ss_pred CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCEE
Confidence 3467888887 5666655 99999999999999876 23333322 2567899999887643
No 60
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.04 E-value=0.0034 Score=52.63 Aligned_cols=56 Identities=25% Similarity=0.456 Sum_probs=42.6
Q ss_pred CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeCCc
Q psy2533 274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGA 332 (684)
Q Consensus 274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~~~ 332 (684)
.+.|..|. ++|++.| |++||+|++|||..+.+. .+...+|... +..+.|.+.|.+.
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECCE
Confidence 35677776 5666655 999999999999999854 5676777664 6689999988664
No 61
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.02 E-value=0.0011 Score=72.34 Aligned_cols=60 Identities=30% Similarity=0.512 Sum_probs=50.9
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCcc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI 181 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~ 181 (684)
.|++|..|.+++||++.| |++||+|++|||..+.+ ..+....|.. .+..+.|.|.|....
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g~~ 339 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQGKQ 339 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 489999999999999999 99999999999999976 4555666653 578899999998754
No 62
>PRK10942 serine endoprotease; Provisional
Probab=96.96 E-value=0.0017 Score=73.66 Aligned_cols=59 Identities=20% Similarity=0.356 Sum_probs=53.0
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~ 180 (684)
.+++|..|.++|+|++.| |++||+|++|||.++.+ ..+...+++..+..+.|+|.|...
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~V~R~g~ 466 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALNIQRGDS 466 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 479999999999999999 99999999999999987 577888888877889999999864
No 63
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.0017 Score=72.34 Aligned_cols=58 Identities=26% Similarity=0.418 Sum_probs=51.5
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeCC
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQG 331 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~~ 331 (684)
.+++|.+.. +||++.| |++||+|+.|||.++.+++..+|+..|+.. |..|+|.+.|.+
T Consensus 112 ~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~ 172 (406)
T COG0793 112 GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG 172 (406)
T ss_pred CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence 567777776 7899998 999999999999999999999999999885 568999999974
No 64
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=96.94 E-value=0.0014 Score=73.05 Aligned_cols=60 Identities=35% Similarity=0.495 Sum_probs=52.4
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCcc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI 181 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~ 181 (684)
.|++|..|.+++||++.| |++||+|++|||.++.+ ..+...+|+. .+..+.|.|.|....
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~~ 423 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGAT 423 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 489999999999999999 99999999999999976 5677888875 377899999998653
No 65
>PRK10139 serine endoprotease; Provisional
Probab=96.94 E-value=0.0018 Score=73.11 Aligned_cols=59 Identities=29% Similarity=0.431 Sum_probs=52.2
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~ 180 (684)
.|++|..|.+++||++.| |++||+|++|||.++.+ ..+...+|++....+.|+|.|...
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~ 448 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNE 448 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 479999999999999999 99999999999999966 577888887766789999998864
No 66
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.67 E-value=0.0036 Score=69.92 Aligned_cols=60 Identities=17% Similarity=0.367 Sum_probs=51.6
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CCEEEEEEEecCcc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGAI 181 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V~LvV~R~~~~ 181 (684)
.++.|..|.+++||+++| |++||+|++|||.++.+ ..+....++.. +..+.+.|.|+...
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNGET 263 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECCEE
Confidence 368999999999999999 99999999999999975 57788888764 56799999998754
No 67
>KOG3938|consensus
Probab=96.66 E-value=0.0026 Score=66.69 Aligned_cols=80 Identities=24% Similarity=0.322 Sum_probs=64.4
Q ss_pred ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--C
Q psy2533 91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--G 168 (684)
Q Consensus 91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g 168 (684)
.+.|.|.| ....||++|+- ++ ..--||+.|.+||.-++--.+++||.|-+|||+++.++.|-++..+||.. +
T Consensus 127 ~kEv~v~K-sedalGlTITD---NG--~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg 200 (334)
T KOG3938|consen 127 AKEVEVVK-SEDALGLTITD---NG--AGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG 200 (334)
T ss_pred ceeEEEEe-cccccceEEee---CC--cceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence 45666765 45679999984 22 22479999999999999888999999999999999999999999999986 4
Q ss_pred CEEEEEEE
Q psy2533 169 PIVTLEIA 176 (684)
Q Consensus 169 ~~V~LvV~ 176 (684)
...+|.+.
T Consensus 201 e~ftlrLi 208 (334)
T KOG3938|consen 201 ETFTLRLI 208 (334)
T ss_pred CeeEEEee
Confidence 44455443
No 68
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=96.66 E-value=0.0051 Score=68.11 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=49.1
Q ss_pred CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCc
Q psy2533 274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGA 332 (684)
Q Consensus 274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~ 332 (684)
+++|..+. ++|++.| |++||+|++|||+++.+++..++..+|+. .+..|.|.|.|.+.
T Consensus 103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~ 163 (389)
T PLN00049 103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPE 163 (389)
T ss_pred cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 67787776 6777776 99999999999999999998888888875 56789999998754
No 69
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=96.59 E-value=0.005 Score=66.55 Aligned_cols=58 Identities=26% Similarity=0.494 Sum_probs=48.1
Q ss_pred CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCc
Q psy2533 274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGA 332 (684)
Q Consensus 274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~ 332 (684)
+++|..|. ++|++.| |++||+|++|||..+.+++..++..++.. .+..|.|.|.|.+.
T Consensus 63 ~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 63 EIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred EEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 56777776 6777777 99999999999999999887888887765 56789999998754
No 70
>PRK11186 carboxy-terminal protease; Provisional
Probab=96.56 E-value=0.0045 Score=72.98 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=48.8
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECC-----EecCCCCHHHHHHHHHh-CCCeEEEEEEeC
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDG-----QSLVGITQEKAAEYLVR-TGPIVTLEIAKQ 330 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG-----~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~ 330 (684)
.+++|..|. |||++.++|++||+|++||+ .++.+++..+++.+|+. .|..|+|.|.|.
T Consensus 255 ~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 255 DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 357777876 79999878999999999994 46778999999999987 466899999884
No 71
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=96.52 E-value=0.0052 Score=69.14 Aligned_cols=59 Identities=36% Similarity=0.488 Sum_probs=50.4
Q ss_pred cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCEEEEEEEecCcc
Q psy2533 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAI 181 (684)
Q Consensus 120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~V~LvV~R~~~~ 181 (684)
++.|..|.++|||+++| |++||+|++|||..+.+ ..+....++. .+..+.++|.|++..
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~~ 281 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQ--WQTFVTLVRDNPGKPLALEIERQGSP 281 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCEEEEEEEECCEE
Confidence 47899999999999999 99999999999999964 5667777765 456899999998754
No 72
>KOG3552|consensus
Probab=96.47 E-value=0.0032 Score=74.79 Aligned_cols=44 Identities=27% Similarity=0.506 Sum_probs=42.5
Q ss_pred cCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330 (684)
Q Consensus 287 dGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~ 330 (684)
.|.|++|||||+|||.+|.++..+.|+++++.+.+.|.|+|+++
T Consensus 89 ~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 89 IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence 68899999999999999999999999999999999999999986
No 73
>KOG0606|consensus
Probab=96.26 E-value=0.014 Score=71.11 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=65.2
Q ss_pred EEEecCCCcccEEEEe------ccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533 95 SVRDMLRQEAKLSEMS------EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168 (684)
Q Consensus 95 ~v~k~~~~GLGfsI~G------G~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg 168 (684)
+++.....+|||++.. +.+ .-..-..|..|.+|+||...| |+.||.|+.|||+++.++.|.+++++|-+.+
T Consensus 630 I~i~~~~~~yGft~~airVy~Gd~d--~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~g 706 (1205)
T KOG0606|consen 630 ITIHFSGKKYGFTLRAIRVYMGDKD--VYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSG 706 (1205)
T ss_pred eeeeccccccCceeeeEEEecCCcc--cceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcC
Confidence 4456678899987643 222 112246788999999999999 9999999999999999999999999999999
Q ss_pred CEEEEEEEe
Q psy2533 169 PIVTLEIAK 177 (684)
Q Consensus 169 ~~V~LvV~R 177 (684)
..|.+.+.-
T Consensus 707 n~v~~~ttp 715 (1205)
T KOG0606|consen 707 NKVTLRTTP 715 (1205)
T ss_pred CeeEEEeec
Confidence 998887753
No 74
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.18 E-value=0.016 Score=55.75 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=52.7
Q ss_pred CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCcccc-CCeeeecCCeecCCCCHHHHHHHHHcC-CCEEEEEEEec
Q psy2533 101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQA-GDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQ 178 (684)
Q Consensus 101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqv-GDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V~LvV~R~ 178 (684)
.+.||++|.-..-......++-|.+|.|+|||+.+| |.+ .|-|+.+++..+.+. ++...++... +..+.|.|...
T Consensus 25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~v~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFELVEANENKPLQLYVYNS 101 (138)
T ss_dssp SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHHHHHTTTS-EEEEEEET
T ss_pred CCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHHHHHcCCCcEEEEEEEC
Confidence 466999998765443345678999999999999999 887 699999999888854 4556666654 66799999765
Q ss_pred C
Q psy2533 179 G 179 (684)
Q Consensus 179 ~ 179 (684)
.
T Consensus 102 ~ 102 (138)
T PF04495_consen 102 K 102 (138)
T ss_dssp T
T ss_pred C
Confidence 4
No 75
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.11 E-value=0.014 Score=66.51 Aligned_cols=71 Identities=23% Similarity=0.221 Sum_probs=53.6
Q ss_pred CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533 101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180 (684)
Q Consensus 101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~ 180 (684)
...||+.+..- .....|+.|.+||||.++| |.+||.|++|||.+..-.. -+++..|.+.+.+.+.
T Consensus 450 ~~~LGl~v~~~------~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~~--------~~~~d~i~v~~~~~~~ 514 (558)
T COG3975 450 AYYLGLKVKSE------GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDR--------YKVNDKIQVHVFREGR 514 (558)
T ss_pred CcccceEeccc------CCeeEEEecCCCChhHhcc-CCCccEEEEEcCccccccc--------cccccceEEEEccCCc
Confidence 45789888632 1268999999999999999 9999999999999221111 1457889999988887
Q ss_pred cccccc
Q psy2533 181 IYHGLA 186 (684)
Q Consensus 181 ~~~~~s 186 (684)
+.....
T Consensus 515 L~e~~v 520 (558)
T COG3975 515 LREFLV 520 (558)
T ss_pred eEEeec
Confidence 655433
No 76
>KOG0609|consensus
Probab=96.05 E-value=0.0069 Score=68.83 Aligned_cols=57 Identities=23% Similarity=0.368 Sum_probs=53.3
Q ss_pred CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533 274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330 (684)
Q Consensus 274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~ 330 (684)
.+||..|. |.|++.|.|++||.|++|||+++.+....++..+|+.+.+.++++|...
T Consensus 147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~ 205 (542)
T KOG0609|consen 147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPS 205 (542)
T ss_pred ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEccc
Confidence 58888887 8999999999999999999999999999999999999999999999854
No 77
>KOG3542|consensus
Probab=95.78 E-value=0.0075 Score=69.71 Aligned_cols=60 Identities=28% Similarity=0.396 Sum_probs=49.5
Q ss_pred CCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533 268 PAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329 (684)
Q Consensus 268 ~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R 329 (684)
+...+.||||.+|. +.|++.| |+.||+||+|||+++.+++...|+.+|+..- .++|.|.-
T Consensus 557 GsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnt-hLtltvKt 618 (1283)
T KOG3542|consen 557 GSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNT-HLTLTVKT 618 (1283)
T ss_pred CccccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCc-eEEEEEec
Confidence 34567899999998 4667766 9999999999999999999999999998753 46666644
No 78
>KOG1738|consensus
Probab=95.74 E-value=0.019 Score=66.40 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=67.4
Q ss_pred cCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEec
Q psy2533 99 MLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178 (684)
Q Consensus 99 ~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~ 178 (684)
.++.|||+-|-.-. +..++|+.+.+++||+.++.|..||.|++||+..+.+..+.-.|..|+....-|.++|..+
T Consensus 210 kp~eglg~~I~Ssy-----dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKr 284 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSY-----DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKR 284 (638)
T ss_pred CcccCCceEEeeec-----CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeecc
Confidence 67889999997533 3468999999999999999999999999999999999999999999998877788887765
Q ss_pred Cc
Q psy2533 179 GA 180 (684)
Q Consensus 179 ~~ 180 (684)
..
T Consensus 285 p~ 286 (638)
T KOG1738|consen 285 PV 286 (638)
T ss_pred CC
Confidence 53
No 79
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=95.66 E-value=0.022 Score=60.13 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=43.5
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcc
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI 333 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~ 333 (684)
.|+.|..+. ++|++.| |++||+|++|||.++.+.. ++..++.. .+..++|.|.|.+..
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~--~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDPE--QAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCeEEEEEEECCEE
Confidence 466777765 4565555 9999999999999998753 55566655 456899999998753
No 80
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=95.27 E-value=0.034 Score=60.84 Aligned_cols=58 Identities=21% Similarity=0.364 Sum_probs=45.9
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcc
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI 333 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~ 333 (684)
.|++|..|. ++|++.| |++||+|++|||+.+.++ .+...++.. .++.|.|.|.|.+..
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~g~~ 339 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLRQGKQ 339 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 589999997 6777765 999999999999999764 355555553 577899999997653
No 81
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=95.24 E-value=0.021 Score=64.19 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=40.2
Q ss_pred EEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEE
Q psy2533 123 IKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176 (684)
Q Consensus 123 Is~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~ 176 (684)
|..|.||++|+..| |++||+|++|||..+.+ ..+....+. +..+.|.|.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~D--w~D~~~~l~--~e~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRD--LIDYQFLCA--DEELELEVL 50 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHhc--CCcEEEEEE
Confidence 67899999999999 99999999999999965 455555553 456888886
No 82
>PRK10898 serine endoprotease; Provisional
Probab=95.24 E-value=0.034 Score=60.88 Aligned_cols=60 Identities=12% Similarity=0.259 Sum_probs=45.5
Q ss_pred CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHH--hCCCeEEEEEEeCCccc
Q psy2533 272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGAIY 334 (684)
Q Consensus 272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk--~sg~~VtL~V~R~~~~~ 334 (684)
..|++|..|. ++|++.| |++||+|++|||..+.+.. +....|. ..++.+.|.|.|.+...
T Consensus 278 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~--~l~~~l~~~~~g~~v~l~v~R~g~~~ 341 (353)
T PRK10898 278 LQGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISAL--ETMDQVAEIRPGSVIPVVVMRDDKQL 341 (353)
T ss_pred CCeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 3689999997 6777655 9999999999999997653 3334443 35678999999987543
No 83
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.047 Score=59.13 Aligned_cols=62 Identities=27% Similarity=0.429 Sum_probs=50.2
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 181 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~ 181 (684)
.|++|..|.++|||++.| |+.||.|+++||..+.+..-....-.....+..+.+.+.|....
T Consensus 270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~ 331 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGKE 331 (347)
T ss_pred CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCEE
Confidence 468999999999999999 99999999999999987644433333334578999999998654
No 84
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=94.93 E-value=0.084 Score=59.03 Aligned_cols=70 Identities=23% Similarity=0.442 Sum_probs=53.4
Q ss_pred CCcccEEEEeccCCCCCcccEEEEEec--------CCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CCEE
Q psy2533 101 RQEAKLSEMSEEGAGQDRLGIYIKSVV--------KGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIV 171 (684)
Q Consensus 101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~--------pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V 171 (684)
+..+|+.+.- .||+|.... .++||+.+| |++||.|++|||.++.. ..++..+++.. +..+
T Consensus 95 G~~iGI~l~t--------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V 163 (402)
T TIGR02860 95 GQSIGVKLNT--------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN--MDDLANLINKAGGEKL 163 (402)
T ss_pred CEEEEEEEec--------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeE
Confidence 4557777641 367775543 268999999 99999999999999976 47777888765 5679
Q ss_pred EEEEEecCcc
Q psy2533 172 TLEIAKQGAI 181 (684)
Q Consensus 172 ~LvV~R~~~~ 181 (684)
.|.|.|....
T Consensus 164 ~LtV~R~Ge~ 173 (402)
T TIGR02860 164 TLTIERGGKI 173 (402)
T ss_pred EEEEEECCEE
Confidence 9999987643
No 85
>KOG1421|consensus
Probab=94.66 E-value=0.13 Score=60.17 Aligned_cols=58 Identities=28% Similarity=0.410 Sum_probs=48.3
Q ss_pred cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCEEEEEEEecCcc
Q psy2533 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAI 181 (684)
Q Consensus 120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~V~LvV~R~~~~ 181 (684)
=+.|..|.++|||.+. |++||.+|+||+..+.+ ...+.++|-. .|..+.|+|.|.+..
T Consensus 304 mLvV~~vL~~gpa~k~--Le~GDillavN~t~l~d--f~~l~~iLDegvgk~l~LtI~Rggqe 362 (955)
T KOG1421|consen 304 MLVVETVLPEGPAEKK--LEPGDILLAVNSTCLND--FEALEQILDEGVGKNLELTIQRGGQE 362 (955)
T ss_pred eEEEEEeccCCchhhc--cCCCcEEEEEcceehHH--HHHHHHHHhhccCceEEEEEEeCCEE
Confidence 3789999999999765 99999999999888765 4666677754 588899999999864
No 86
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=94.13 E-value=0.27 Score=44.05 Aligned_cols=59 Identities=22% Similarity=0.410 Sum_probs=37.1
Q ss_pred cEEEEEecCCC--------hhcccC-ccccCCeeeecCCeecCCCCHHHHHHHH-HcCCCEEEEEEEecCc
Q psy2533 120 GIYIKSVVKGG--------AADANG-RLQAGDQLLKVDGQSLVGITQEKAAEYL-VRTGPIVTLEIAKQGA 180 (684)
Q Consensus 120 gIfIs~V~pGG--------pA~r~G-rLqvGDrILaVNG~sl~g~sh~eAV~lL-k~sg~~V~LvV~R~~~ 180 (684)
+..|.+|.+|- |-..-| .+++||.|++|||+++..-. ....+| .+++..|.|+|.+...
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-STT
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCCC
Confidence 68899999984 433443 46799999999999997642 234444 4567899999988753
No 87
>KOG3129|consensus
Probab=93.76 E-value=0.12 Score=53.01 Aligned_cols=61 Identities=26% Similarity=0.366 Sum_probs=44.3
Q ss_pred cEEEEEecCCChhcccCccccCCeeeecCCeecCCCC-HHHHHHHHHc-CCCEEEEEEEecCcc
Q psy2533 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGIT-QEKAAEYLVR-TGPIVTLEIAKQGAI 181 (684)
Q Consensus 120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~s-h~eAV~lLk~-sg~~V~LvV~R~~~~ 181 (684)
-++|..|.|+|||+.+| |++||.|+.+..+.-.+.. ........+. -+..+.+.|.|....
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~ 202 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK 202 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence 58999999999999999 9999999997665544443 2233333333 355688999888654
No 88
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=93.07 E-value=0.16 Score=54.33 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=41.3
Q ss_pred EecCCCh---hcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCEEEEEEEecCccc
Q psy2533 125 SVVKGGA---ADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAIY 182 (684)
Q Consensus 125 ~V~pGGp---A~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~V~LvV~R~~~~~ 182 (684)
+|.||.. -...| |+.||.+++|||.++.+. +++.+++.+. ...++|+|.|++...
T Consensus 210 rl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~~ 269 (276)
T PRK09681 210 AVKPGADRSLFDASG-FKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGARH 269 (276)
T ss_pred EECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEEE
Confidence 3445543 34568 999999999999999875 5566666543 567999999998653
No 89
>KOG3532|consensus
Probab=92.93 E-value=0.25 Score=57.87 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=58.0
Q ss_pred ecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEe
Q psy2533 98 DMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177 (684)
Q Consensus 98 k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R 177 (684)
...+..+|+..-. .+...|-|..|.++++|.++. +++||+|++|||++++. ..++...++.....|...+.|
T Consensus 382 ~~~s~~ig~vf~~-----~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 382 YDVSSPIGLVFDK-----NTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred ccccCceeEEEec-----CCceEEEEEEecCCChhhHhc-CCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEee
Confidence 3445667776543 123578999999999999998 99999999999999965 688999999887777766665
Q ss_pred c
Q psy2533 178 Q 178 (684)
Q Consensus 178 ~ 178 (684)
.
T Consensus 454 ~ 454 (1051)
T KOG3532|consen 454 S 454 (1051)
T ss_pred c
Confidence 3
No 90
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=92.45 E-value=0.26 Score=55.24 Aligned_cols=49 Identities=27% Similarity=0.542 Sum_probs=37.7
Q ss_pred hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeCCcc
Q psy2533 282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGAI 333 (684)
Q Consensus 282 GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~~~~ 333 (684)
++|++ ++|++||+|++|||..+..+ ++..++++.. +..+.|.|.|.+..
T Consensus 124 SPAa~-AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~Ge~ 173 (402)
T TIGR02860 124 SPGEE-AGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERGGKI 173 (402)
T ss_pred CHHHH-cCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEECCEE
Confidence 34554 45999999999999999765 5667777664 56899999987643
No 91
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=92.23 E-value=0.32 Score=43.64 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=27.9
Q ss_pred CCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCc
Q psy2533 289 RLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGA 332 (684)
Q Consensus 289 rLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~ 332 (684)
.+++||.|++|||+.|..-. .-..+|.. ++..|.|.|.+.+.
T Consensus 39 ~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 39 DVREGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp ---TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-STT
T ss_pred CCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCCC
Confidence 57899999999999998653 34556655 67789999998764
No 92
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=92.16 E-value=0.25 Score=53.60 Aligned_cols=56 Identities=29% Similarity=0.684 Sum_probs=48.4
Q ss_pred cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecC
Q psy2533 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQG 179 (684)
Q Consensus 120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~ 179 (684)
|||+..|..+++| .|.|+.||.|++|||.++.. ..+....++ +.|+.|++...|..
T Consensus 131 gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 131 GVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred eEEEEEccCCcch--hceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEecc
Confidence 7999999999999 68899999999999999976 467777776 45999999999754
No 93
>KOG4371|consensus
Probab=91.34 E-value=0.26 Score=60.01 Aligned_cols=86 Identities=23% Similarity=0.346 Sum_probs=72.6
Q ss_pred CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533 89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168 (684)
Q Consensus 89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg 168 (684)
...+.|.+++++..++|+.+....-+ .+|||..+...+.|.-.|+|++||+|+..+|.++.+.+......-++-..
T Consensus 1244 ~~l~~~~~~~~p~~~~~~~~~~~~~s----~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~ 1319 (1332)
T KOG4371|consen 1244 APLISVMLLKKPMATLGLSLAKRTMS----DGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQ 1319 (1332)
T ss_pred chhhhheeeecccccccccccccCcC----CceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhcc
Confidence 34567788899999999999865433 48999999999999999999999999999999999999988887777667
Q ss_pred CEEEEEEEec
Q psy2533 169 PIVTLEIAKQ 178 (684)
Q Consensus 169 ~~V~LvV~R~ 178 (684)
+.|.+++.|.
T Consensus 1320 ~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1320 GPVQITVTRE 1329 (1332)
T ss_pred Cchhheehhh
Confidence 7777777654
No 94
>KOG3938|consensus
Probab=91.22 E-value=0.24 Score=52.55 Aligned_cols=61 Identities=21% Similarity=0.414 Sum_probs=48.4
Q ss_pred EEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCccccc
Q psy2533 276 FYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAIYHG 336 (684)
Q Consensus 276 FV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~~~~~ 336 (684)
||+.|. +.-++--.+++||.|-+|||+++.|.-|-+++.+||.- +...+|.+.-+...+..
T Consensus 152 FIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLiePk~af~~ 216 (334)
T KOG3938|consen 152 FIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIEPKSAFDG 216 (334)
T ss_pred eeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeeccccccCc
Confidence 555554 33455457999999999999999999999999999994 56788888877655544
No 95
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=90.41 E-value=0.43 Score=51.06 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=37.8
Q ss_pred hhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY 334 (684)
Q Consensus 285 ardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~ 334 (684)
....+|++||.+++|||.+|.+.. ++.+++.. ....++|.|.|.+...
T Consensus 220 F~~~GLq~GDva~sING~dL~D~~--qa~~l~~~L~~~tei~ltVeRdGq~~ 269 (276)
T PRK09681 220 FDASGFKEGDIAIALNQQDFTDPR--AMIALMRQLPSMDSIQLTVLRKGARH 269 (276)
T ss_pred HHHcCCCCCCEEEEeCCeeCCCHH--HHHHHHHHhccCCeEEEEEEECCEEE
Confidence 456679999999999999998764 56666655 3567999999998654
No 96
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=0.89 Score=49.31 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=46.5
Q ss_pred CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533 271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334 (684)
Q Consensus 271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~ 334 (684)
...|.+|..+. ++|++.| |+.||.|+++||..+.+..-....-.....+..+.+.+.|.+...
T Consensus 268 ~~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~ 332 (347)
T COG0265 268 VAAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGKER 332 (347)
T ss_pred CCCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCEEE
Confidence 35678999997 6777776 999999999999999876433222222235779999999985443
No 97
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=88.32 E-value=0.6 Score=52.83 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=30.3
Q ss_pred hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2533 282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328 (684)
Q Consensus 282 GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~ 328 (684)
++|++. +|++||+|++|||+.+.++. +....+ .+..+.|.|.
T Consensus 9 SpAe~A-GLe~GD~IlsING~~V~Dw~--D~~~~l--~~e~l~L~V~ 50 (433)
T TIGR03279 9 SIAEEL-GFEPGDALVSINGVAPRDLI--DYQFLC--ADEELELEVL 50 (433)
T ss_pred CHHHHc-CCCCCCEEEEECCEECCCHH--HHHHHh--cCCcEEEEEE
Confidence 455555 59999999999999998653 443444 2456888886
No 98
>KOG1320|consensus
Probab=88.18 E-value=1.1 Score=51.13 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=47.8
Q ss_pred cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC--CEEEEEEEecCc
Q psy2533 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG--PIVTLEIAKQGA 180 (684)
Q Consensus 120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg--~~V~LvV~R~~~ 180 (684)
+++|..|.||+++..-+ +.+||+|+.|||.++.++.| ...++..+- +.|.++..+...
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~--l~~~i~~~~~~~~v~vl~~~~~e 458 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKH--LYELIEECSTEDKVAVLDRRSAE 458 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCEEeechHH--HHHHHHhcCcCceEEEEEecCcc
Confidence 68999999999999888 99999999999999999855 567777664 467776666543
No 99
>KOG0606|consensus
Probab=87.39 E-value=0.83 Score=56.41 Aligned_cols=46 Identities=28% Similarity=0.487 Sum_probs=41.1
Q ss_pred hhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533 284 RNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329 (684)
Q Consensus 284 AardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R 329 (684)
.+...+|++||.|+-|||+.+.++.|.+++++|-+.+..|++.+..
T Consensus 670 PA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~ttp 715 (1205)
T KOG0606|consen 670 PAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRTTP 715 (1205)
T ss_pred CccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEeec
Confidence 3445569999999999999999999999999999999999888765
No 100
>KOG1421|consensus
Probab=85.51 E-value=3.2 Score=49.27 Aligned_cols=136 Identities=18% Similarity=0.135 Sum_probs=80.1
Q ss_pred cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCccccccccccCCCCCccccC
Q psy2533 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRG 199 (684)
Q Consensus 120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~~~~~stl~s~psP~~~s~ 199 (684)
=+.|++|.++-+- - |..||.||+|||..+..++...-+. .+.++|.|++-........ .|...
T Consensus 772 l~~ishv~~~~~k--i--l~~gdiilsvngk~itr~~dl~d~~-------eid~~ilrdg~~~~ikipt--~p~~e---- 834 (955)
T KOG1421|consen 772 LYVISHVRPLLHK--I--LGVGDIILSVNGKMITRLSDLHDFE-------EIDAVILRDGIEMEIKIPT--YPEYE---- 834 (955)
T ss_pred EEEEEeeccCccc--c--cccccEEEEecCeEEeeehhhhhhh-------hhheeeeecCcEEEEEecc--ccccc----
Confidence 4778899887543 2 8899999999999998887655222 5677888876443221100 00000
Q ss_pred CCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEe
Q psy2533 200 QVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQN 279 (684)
Q Consensus 200 ~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~s 279 (684)
. .+.+. -+|..+.+ .+..+...- .....|+||..
T Consensus 835 ---t-~r~vi-----------------~~gailq~--------ph~av~~q~-----------------edlp~gvyvt~ 868 (955)
T KOG1421|consen 835 ---T-SRAVI-----------------WMGAILQP--------PHSAVFEQV-----------------EDLPEGVYVTS 868 (955)
T ss_pred ---c-ceEEE-----------------EEeccccC--------chHHHHHHH-----------------hccCCceEEee
Confidence 0 00000 01211110 011111000 01225889998
Q ss_pred cc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCe
Q psy2533 280 LS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 322 (684)
Q Consensus 280 I~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~ 322 (684)
.. ++|.+ .|+.-.-|.+|||+.+- +.++-+.+|+.-++.
T Consensus 869 rg~gspalq--~l~aa~fitavng~~t~--~lddf~~~~~~ipdn 909 (955)
T KOG1421|consen 869 RGYGSPALQ--MLRAAHFITAVNGHDTN--TLDDFYHMLLEIPDN 909 (955)
T ss_pred cccCChhHh--hcchheeEEEecccccC--cHHHHHHHHhhCCCC
Confidence 87 56766 69999999999998875 456778888886654
No 101
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=84.20 E-value=1.7 Score=47.49 Aligned_cols=59 Identities=20% Similarity=0.440 Sum_probs=44.5
Q ss_pred CCcEEEecchhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcc
Q psy2533 273 PERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI 333 (684)
Q Consensus 273 ~GIFV~sI~GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~ 333 (684)
.|+|+..+.-.-...|.|+.||.|++|||+.+.. .++....+++ .|+.|++.+.|....
T Consensus 130 ~gvyv~~v~~~~~~~gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~~~ 190 (342)
T COG3480 130 AGVYVLSVIDNSPFKGKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHNET 190 (342)
T ss_pred eeEEEEEccCCcchhceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEeccCC
Confidence 4788888862222346799999999999999975 4577777755 689999999985443
No 102
>KOG1320|consensus
Probab=83.45 E-value=3.5 Score=47.35 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=42.9
Q ss_pred CCcEEEecc-hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC--CeEEEEEEeCC
Q psy2533 273 PERFYQNLS-VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG--PIVTLEIAKQG 331 (684)
Q Consensus 273 ~GIFV~sI~-GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg--~~VtL~V~R~~ 331 (684)
.+++|..|. +..+..+.+++||+|+.|||+.+.++. +...+|..+. ++|.++..|..
T Consensus 398 q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~--~l~~~i~~~~~~~~v~vl~~~~~ 457 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLK--HLYELIEECSTEDKVAVLDRRSA 457 (473)
T ss_pred eEEEEEEeccCCCcccccccCCCEEEEECCEEeechH--HHHHHHHhcCcCceEEEEEecCc
Confidence 567777776 555556779999999999999999875 5677777765 36766665543
No 103
>KOG4407|consensus
Probab=82.53 E-value=0.48 Score=58.92 Aligned_cols=59 Identities=31% Similarity=0.506 Sum_probs=54.3
Q ss_pred cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecC
Q psy2533 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179 (684)
Q Consensus 120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~ 179 (684)
.|||..|.+.|||+... |+-||+|+.||..++.++....+|.++++.....+|.|.-..
T Consensus 144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~~ 202 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPKE 202 (1973)
T ss_pred hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCceecccc
Confidence 68999999999999998 999999999999999999999999999999888888776543
No 104
>KOG1738|consensus
Probab=81.39 E-value=1.9 Score=50.55 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=49.0
Q ss_pred cEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533 275 RFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332 (684)
Q Consensus 275 IFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~ 332 (684)
++|.++. ++|+.+..|..||+++.||+..+.|..+.-.|.-|.....-|.++|..+..
T Consensus 227 h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp~ 286 (638)
T KOG1738|consen 227 HVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRPV 286 (638)
T ss_pred eeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccCC
Confidence 3444454 789999999999999999999999999999999999988877777766543
No 105
>KOG3129|consensus
Probab=78.58 E-value=5.5 Score=41.31 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=41.8
Q ss_pred CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCC-HHHHHHHHHh-CCCeEEEEEEeCCccc
Q psy2533 272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGIT-QEKAAEYLVR-TGPIVTLEIAKQGAIY 334 (684)
Q Consensus 272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~T-h~eAv~lLk~-sg~~VtL~V~R~~~~~ 334 (684)
.+-.+|.+|. +||++. +|+.||.|+.+..+.-.++. ........+. .+..|.+.|.|.+...
T Consensus 138 ~~Fa~V~sV~~~SPA~~a-Gl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v 203 (231)
T KOG3129|consen 138 RPFAVVDSVVPGSPADEA-GLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKV 203 (231)
T ss_pred cceEEEeecCCCChhhhh-CcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEE
Confidence 3456777776 566665 59999999998877666654 3333333333 4567899999987643
No 106
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=78.38 E-value=3.1 Score=43.91 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=38.3
Q ss_pred CChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCEEEEEEEecCcc
Q psy2533 129 GGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAI 181 (684)
Q Consensus 129 GGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~V~LvV~R~~~~ 181 (684)
++.-...| |+.||..+++|+.++++ ..++..+|+.. ...+.|+|.|++..
T Consensus 217 ~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~qlTv~R~G~r 268 (275)
T COG3031 217 GSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSLQLTVIRRGKR 268 (275)
T ss_pred cchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhcCcceEEEEEecCcc
Confidence 34455678 99999999999999876 46666666643 56799999998754
No 107
>KOG3834|consensus
Probab=71.54 E-value=26 Score=39.95 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=48.3
Q ss_pred ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180 (684)
Q Consensus 119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~ 180 (684)
.|.-|.+|..+++|+++|..---|-|++|||.-|.. ..+..-.+|+..-..|+|+|.....
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~kt 75 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNSKT 75 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEeccc
Confidence 356778999999999999888899999999999854 3455566677665669999977654
No 108
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=67.22 E-value=8.1 Score=44.86 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=35.5
Q ss_pred CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533 273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~ 334 (684)
.+.-|..|. |+|.+.| |.+||.|++|||.+-.... -.+++.+.+.+.|.+...
T Consensus 462 g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~~--------~~~~d~i~v~~~~~~~L~ 516 (558)
T COG3975 462 GHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDR--------YKVNDKIQVHVFREGRLR 516 (558)
T ss_pred CeeEEEecCCCChhHhcc-CCCccEEEEEcCccccccc--------cccccceEEEEccCCceE
Confidence 344556665 7888877 9999999999998222111 025667888887766443
No 109
>KOG3532|consensus
Probab=65.20 E-value=12 Score=44.57 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=38.9
Q ss_pred hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533 282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329 (684)
Q Consensus 282 GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R 329 (684)
.+|.+.. |++||.|++|||++++ +..++...++.....|+.++.|
T Consensus 409 s~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 409 SLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred ChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence 6788876 9999999999999996 4678999999988888888877
No 110
>PF12812 PDZ_1: PDZ-like domain
Probab=64.73 E-value=12 Score=32.84 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=36.5
Q ss_pred EEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169 (684)
Q Consensus 121 IfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~ 169 (684)
+++.....|+++...| +..|-.|.+|||.++.++ ++.++.+++.++
T Consensus 32 gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ipd 77 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPDL--DDFIKVVKKIPD 77 (78)
T ss_pred EEEEEecCCChhhhCC-CCCCeEEEeECCcCCcCH--HHHHHHHHhCCC
Confidence 4555678888887666 999999999999999875 777888877654
No 111
>KOG1945|consensus
Probab=62.49 E-value=4.2 Score=44.93 Aligned_cols=80 Identities=28% Similarity=0.377 Sum_probs=67.3
Q ss_pred ecCCCcccEEEEe---ccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEE
Q psy2533 98 DMLRQEAKLSEMS---EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174 (684)
Q Consensus 98 k~~~~GLGfsI~G---G~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~Lv 174 (684)
..+..|+|++++| |++.+....++|+.++.+|+.-+++|+..+-|.+..+.+..+..++...++..++.+-..+++.
T Consensus 106 ~~~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S~~~~n~~ 185 (377)
T KOG1945|consen 106 EKGAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGSSSRVNFT 185 (377)
T ss_pred cCCcCCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccchhccCCc
Confidence 4567789998887 3344455679999999999999999999999999999999999999999999998887766666
Q ss_pred EEe
Q psy2533 175 IAK 177 (684)
Q Consensus 175 V~R 177 (684)
..+
T Consensus 186 s~~ 188 (377)
T KOG1945|consen 186 SPT 188 (377)
T ss_pred ccc
Confidence 544
No 112
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=61.65 E-value=13 Score=39.51 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=32.5
Q ss_pred hcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCc
Q psy2533 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGA 332 (684)
Q Consensus 286 rdGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~ 332 (684)
..-+|+.||+.++||+.++++ .+++..+|.. .-..+.|+|.|++.
T Consensus 221 ~~sglq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~qlTv~R~G~ 267 (275)
T COG3031 221 YKSGLQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSLQLTVIRRGK 267 (275)
T ss_pred hhhcCCCcceEEEecCcccCC--HHHHHHHHHhhhcCcceEEEEEecCc
Confidence 344599999999999977754 3445555554 34568999999875
No 113
>KOG0792|consensus
Probab=53.78 E-value=5.4 Score=49.42 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCcccEEEEeccCCC--CCcccEEEEEec-------------CCChhccc-CccccCCeeeecCCeecCCCCHHHHHHHH
Q psy2533 101 RQEAKLSEMSEEGAG--QDRLGIYIKSVV-------------KGGAADAN-GRLQAGDQLLKVDGQSLVGITQEKAAEYL 164 (684)
Q Consensus 101 ~~GLGfsI~GG~~~~--~~~~gIfIs~V~-------------pGGpA~r~-GrLqvGDrILaVNG~sl~g~sh~eAV~lL 164 (684)
.+.+||-+.||.+.. ....++.+++|. |+++|+.+ -++..||.++.|||.++....|...|.+|
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 567999999986643 123578888888 88888655 67899999999999999999999999999
Q ss_pred HcCCC
Q psy2533 165 VRTGP 169 (684)
Q Consensus 165 k~sg~ 169 (684)
++...
T Consensus 795 rs~r~ 799 (1144)
T KOG0792|consen 795 RSPRE 799 (1144)
T ss_pred hhhhh
Confidence 87643
No 114
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=48.06 E-value=42 Score=32.52 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=36.0
Q ss_pred CCcEEEecc--hhhhhcCCCCC-CCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCC
Q psy2533 273 PERFYQNLS--VYRNQNGRLQA-GDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQG 331 (684)
Q Consensus 273 ~GIFV~sI~--GaAardGrLr~-GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~ 331 (684)
.+.=|.+|. +||+++| |++ .|-|+.+++..+.+.. +-..+++. .+..+.|.|....
T Consensus 43 ~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~--~l~~~v~~~~~~~l~L~Vyns~ 102 (138)
T PF04495_consen 43 EGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDED--DLFELVEANENKPLQLYVYNSK 102 (138)
T ss_dssp CEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--STC--HHHHHHHHTTTS-EEEEEEETT
T ss_pred ceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCHH--HHHHHHHHcCCCcEEEEEEECC
Confidence 344555665 7888888 887 6999999998888654 55556655 4567999997643
No 115
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=47.44 E-value=32 Score=37.46 Aligned_cols=53 Identities=26% Similarity=0.513 Sum_probs=39.7
Q ss_pred EEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCE---EEEEEEe
Q psy2533 122 YIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPI---VTLEIAK 177 (684)
Q Consensus 122 fIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~---V~LvV~R 177 (684)
++..+..+++|...| |++||+++++|+..+... .+....+.. .+.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASW--DDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCH--HHHHHHHHhccCCcccceEEEEEe
Confidence 344799999999999 999999999999999775 444444433 2333 6777777
No 116
>PF12812 PDZ_1: PDZ-like domain
Probab=46.94 E-value=25 Score=30.78 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=31.4
Q ss_pred CcEEEecchhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC
Q psy2533 274 ERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 320 (684)
Q Consensus 274 GIFV~sI~GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg 320 (684)
|+|+..-.|.-+..+++..|-.|..|||+.+.++ ++-+++++.-+
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ip 76 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDL--DDFIKVVKKIP 76 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcCCcCH--HHHHHHHHhCC
Confidence 4455443454455666999999999999999775 45566666544
No 117
>KOG3834|consensus
Probab=42.46 E-value=84 Score=36.03 Aligned_cols=87 Identities=13% Similarity=0.010 Sum_probs=56.8
Q ss_pred ceEEEEEecCCCc---ccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeec-CCeecCCCCHHHHHHHHHc
Q psy2533 91 MKSHSVRDMLRQE---AKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKV-DGQSLVGITQEKAAEYLVR 166 (684)
Q Consensus 91 ~~~V~v~k~~~~G---LGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaV-NG~sl~g~sh~eAV~lLk~ 166 (684)
.+.+.|......+ ||++|.-....+.-..-.-|-+|.+.+||+++|....+|-|+-+ +.+- -..++...+|..
T Consensus 78 ~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~---~~~eDl~~lIes 154 (462)
T KOG3834|consen 78 VRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVM---HEEEDLFTLIES 154 (462)
T ss_pred eEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhc---cchHHHHHHHHh
Confidence 4455555555556 89988754332222234567889999999999955599999876 4432 334555566654
Q ss_pred C-CCEEEEEEEecCc
Q psy2533 167 T-GPIVTLEIAKQGA 180 (684)
Q Consensus 167 s-g~~V~LvV~R~~~ 180 (684)
. +..+.|.|...+.
T Consensus 155 he~kpLklyVYN~D~ 169 (462)
T KOG3834|consen 155 HEGKPLKLYVYNHDT 169 (462)
T ss_pred ccCCCcceeEeecCC
Confidence 4 6678998876553
No 118
>KOG1703|consensus
Probab=24.69 E-value=31 Score=39.64 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=62.3
Q ss_pred cccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533 103 EAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180 (684)
Q Consensus 103 GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~ 180 (684)
.+||.+.+| ....++-|..+.+++-++... +..+|.|..++|..-..+.|.++..-.+..+....+.+.|...
T Consensus 9 ~~~~r~~~~----~~~~~l~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 81 (479)
T KOG1703|consen 9 PWGFRLQGG----DFLQPLRILRVTPGGKAADAE-LDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRSET 81 (479)
T ss_pred Cceeeeccc----ccccccceeccCCCCcccccc-ccccccccccccccccccccccccCcccccccccccccccccc
Confidence 677776654 223468999999999999888 9999999999999999999999999999998889999888643
No 119
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=24.61 E-value=1.3e+02 Score=30.55 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=33.6
Q ss_pred cCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeE
Q psy2533 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 323 (684)
Q Consensus 287 dGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~V 323 (684)
.|.+.+||+++=|+++-..|-|..+++++++++|..|
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V 152 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYI 152 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEE
Confidence 4678899999999999999999999999999988754
No 120
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=22.55 E-value=1.4e+02 Score=32.46 Aligned_cols=45 Identities=24% Similarity=0.494 Sum_probs=31.7
Q ss_pred hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCe---EEEEEEe
Q psy2533 282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPI---VTLEIAK 329 (684)
Q Consensus 282 GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~---VtL~V~R 329 (684)
++|+..| |++||+|+++|+..+..+. +....+.. .+.. +.+.+.|
T Consensus 140 s~a~~a~-l~~Gd~iv~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 140 SAAALAG-LRPGDRIVAVDGEKVASWD--DVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred CHHHHcC-CCCCCEEEeECCEEccCHH--HHHHHHHhccCCcccceEEEEEe
Confidence 4566665 9999999999999998764 33333332 3444 7888888
No 121
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=21.51 E-value=1.3e+02 Score=30.59 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=34.1
Q ss_pred cCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEE
Q psy2533 135 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172 (684)
Q Consensus 135 ~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~ 172 (684)
.|.+..||+|+=|+++-.+|-|...++.+++++|..|.
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~ 153 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIK 153 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEE
Confidence 36688999999999999999999999999999987653
Done!